HHsearch alignment for GI: 254780701 and conserved domain: PRK11091

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional.
Probab=100.00  E-value=0  Score=508.97  Aligned_cols=241  Identities=27%  Similarity=0.455  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999988999997764201389999999998503368789378999999999999999999999999987422
Q gi|254780701|r  237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA  316 (495)
Q Consensus       237 ~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrlea  316 (495)
T Consensus       271 ~aeeaLE~AsraKS~FLAnMSHEIRTPLNgIlG~seLL~~t~L----~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEa  346 (779)
T PRK11091        271 RYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTEL----TAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDR  346 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999987268756539999999999807999----999999999999999999999999999999966


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             0015653101199999999999999997311221000367610-104798999988777655688606798879999999
Q gi|254780701|r  317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW  395 (495)
Q Consensus       317 g~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~  395 (495)
T Consensus       347 Gkl~l~~~~fdl~~ll~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~-G~V~l~v~~  425 (779)
T PRK11091        347 RKLQLDNQPVDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRY  425 (779)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEE
T ss_conf             9967887767599999999999999999749889999789998628638999999999999999773899-977999998


Q ss_pred             ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf             76985999998789978987854422652315777678-99988805899999999619859999798995298898472
Q gi|254780701|r  396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       396 ~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~-~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~  474 (495)
T Consensus       426 ~~~~~l~f~V~DTGiGI~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl  505 (779)
T PRK11091        426 EDGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHA  505 (779)
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEC
T ss_conf             27988999999579999999999870575606678777677887607999999999849979999559987179999976


Q ss_pred             HHCCCCCC
Q ss_conf             47074699
Q gi|254780701|r  475 TRVLNFIP  482 (495)
Q Consensus       475 ~~~~~~~p  482 (495)
T Consensus       506 ~~~~~~~~  513 (779)
T PRK11091        506 PAVAEEVE  513 (779)
T ss_pred             CCCCCCCC
T ss_conf             65566776