HHsearch alignment for GI: 254780701 and conserved domain: PRK11091
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional.
Probab=100.00 E-value=0 Score=508.97 Aligned_cols=241 Identities=27% Similarity=0.455 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988999997764201389999999998503368789378999999999999999999999999987422
Q gi|254780701|r 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 (495)
Q Consensus 237 ~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrlea 316 (495)
T Consensus 271 ~aeeaLE~AsraKS~FLAnMSHEIRTPLNgIlG~seLL~~t~L----~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEa 346 (779)
T PRK11091 271 RYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTEL----TAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDR 346 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999987268756539999999999807999----999999999999999999999999999999966
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 0015653101199999999999999997311221000367610-104798999988777655688606798879999999
Q gi|254780701|r 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 (495)
Q Consensus 317 g~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~ 395 (495)
T Consensus 347 Gkl~l~~~~fdl~~ll~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~-G~V~l~v~~ 425 (779)
T PRK11091 347 RKLQLDNQPVDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRY 425 (779)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEE
T ss_conf 9967887767599999999999999999749889999789998628638999999999999999773899-977999998
Q ss_pred ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 76985999998789978987854422652315777678-99988805899999999619859999798995298898472
Q gi|254780701|r 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 396 ~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~-~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
T Consensus 426 ~~~~~l~f~V~DTGiGI~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl 505 (779)
T PRK11091 426 EDGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHA 505 (779)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 27988999999579999999999870575606678777677887607999999999849979999559987179999976
Q ss_pred HHCCCCCC
Q ss_conf 47074699
Q gi|254780701|r 475 TRVLNFIP 482 (495)
Q Consensus 475 ~~~~~~~p 482 (495)
T Consensus 506 ~~~~~~~~ 513 (779)
T PRK11091 506 PAVAEEVE 513 (779)
T ss_pred CCCCCCCC
T ss_conf 65566776