HHsearch alignment for GI: 254780701 and conserved domain: PRK11107

>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=100.00  E-value=0  Score=528.60  Aligned_cols=248  Identities=35%  Similarity=0.562  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999998899999776420138999999999850336878937899999999999999999
Q gi|254780701|r  224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN  303 (495)
Q Consensus       224 l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~  303 (495)
T Consensus       268 ~leq~e~qn~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~  343 (920)
T PRK11107        268 TLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLA  343 (920)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHH
T ss_conf             99999887899999999999999999999996648654219999999999856999----99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999874220015653101199999999999999997311221000367610-10479899998877765568860
Q gi|254780701|r  304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF  382 (495)
Q Consensus       304 Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~  382 (495)
T Consensus       344 lIndiLD~SkiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKf  423 (920)
T PRK11107        344 IINDILDFSKLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKF  423 (920)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHC
T ss_conf             99999999998459836740167899999999999999999739879999789997306538999999999999999971


Q ss_pred             CCCCCEEEEEEEEEC--CC--EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             679887999999976--98--59999987899789878544226523157776789998880589999999961985999
Q gi|254780701|r  383 TAIGGRVHVTVGWTS--GR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI  458 (495)
Q Consensus       383 T~~gG~V~v~~~~~~--~~--~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v  458 (495)
T Consensus       424 T~~-G~I~v~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v  502 (920)
T PRK11107        424 TES-GNIDILVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF  502 (920)
T ss_pred             CCC-CCEEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             889-9379999999647984899999999705869999997854201567654456798774299999999980991799


Q ss_pred             EEECCCCEEEEEEECHHH
Q ss_conf             979899529889847247
Q gi|254780701|r  459 RSKLREGVEVIAILPNTR  476 (495)
Q Consensus       459 ~S~~G~Gt~f~v~LP~~~  476 (495)
T Consensus       503 ~S~~g~GS~F~Ftlpl~~  520 (920)
T PRK11107        503 HSQPNRGSTFWFHLPLDL  520 (920)
T ss_pred             EECCCCCEEEEEEEECCC
T ss_conf             954899748999998047