HHsearch alignment for GI: 254780701 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=100.00 E-value=4.3e-44 Score=396.89 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9998899999776420138999999999850336878-937899999999999999999999999998742200156531
Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL-NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 (495)
Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~-~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~ 324 (495)
T Consensus 158 lealg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~----~l~~~ 233 (538)
T PRK13557 158 MEALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQ----KLDGR 233 (538)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCE
T ss_conf 99999999887887626999999999999864016888999999999999999999999999999975827----68771
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE--------
Q ss_conf 011999999999999999973112210003676101047989999887776556886067988799999997--------
Q gi|254780701|r 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396 (495)
Q Consensus 325 ~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~-------- 396 (495)
T Consensus 234 ~~~l~~lv~~~~~l~~-~~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~~~~ 312 (538)
T PRK13557 234 VVNLNGLVSGMGEMAE-RTLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEHDLA 312 (538)
T ss_pred EECHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCC
T ss_conf 7729999999999999-985299199998079887087558999999999898799865789759999987641542100
Q ss_pred ------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf ------69859999987899789878544226523157776789998880589999999961985999979899529889
Q gi|254780701|r 397 ------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 (495)
Q Consensus 397 ------~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v 470 (495)
T Consensus 313 ~~~~~~~g~~v~i~V~DtG~GI~~e~~~rIFepFftt----k~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v 388 (538)
T PRK13557 313 MYHQLPPGRYVSIAVTDTGSGMPPEILARVMEPFFTT----KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL 388 (538)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEE----CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf 1245788878999999868988989999772501042----245787772499999999987995999932898779999
Q ss_pred EECHHHCCCC
Q ss_conf 8472470746
Q gi|254780701|r 471 ILPNTRVLNF 480 (495)
Q Consensus 471 ~LP~~~~~~~ 480 (495)
T Consensus 389 ~lP~~~~~~~ 398 (538)
T PRK13557 389 YFPASEQAEN 398 (538)
T ss_pred EEECCCCCCC
T ss_conf 9867876667