HHsearch alignment for GI: 254780701 and conserved domain: TIGR01925

>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.36  E-value=0.00076  Score=51.86  Aligned_cols=95  Identities=16%  Similarity=0.278  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             999988777655688606---79887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r  366 KGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL  442 (495)
Q Consensus       366 ~~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL  442 (495)
T Consensus        38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~-~d~~~~~~v~D~G~GI~~--lE~A~~PLyTskPe----LERSGMGF  110 (137)
T TIGR01925        38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATI-EDDEVSITVRDEGIGIEN--LEEAREPLYTSKPE----LERSGMGF  110 (137)
T ss_pred             HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEE-ECCEEEEEEEECCCCHHH--HHHHCCCCCCCCCC----CCCCCCCE
T ss_conf             555433322321205314563799778999996-054899998646757233--78532664579987----22067860


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99999999619859999798995298898
Q gi|254780701|r  443 PIAQSIMANHGGQFLIRSKLREGVEVIAI  471 (495)
Q Consensus       443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~  471 (495)
T Consensus       111 TvME~F----MD~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       111 TVMESF----MDDVEVDSEKEKGTKIILK  135 (137)
T ss_pred             EEECCC----CCCEEEEECCCCCCEEEEE
T ss_conf             121112----4512686238998468875