HHsearch alignment for GI: 254780701 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=549.07 Aligned_cols=238 Identities=37% Similarity=0.578 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988999997764201389999999998503368789378999999999999999999999999987422
Q gi|254780701|r 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 (495)
Q Consensus 237 ~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrlea 316 (495)
T Consensus 493 kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L----~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEa 568 (1052)
T TIGR02956 493 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL----TSQQQQYLQVINRSGESLLDILNDILDYSKIEA 568 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999974887688741351132011368999975058998----888999999998622789999846754677610
Q ss_pred H--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 0--0156531011999999999999999973112210003676101-047989999887776556886067988799999
Q gi|254780701|r 317 G--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 317 g--~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~-v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
T Consensus 569 GGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~-Gsv~l~~ 647 (1052)
T TIGR02956 569 GGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDR-GSVVLRV 647 (1052)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCC-CEEEEEE
T ss_conf 874653455677888899999999998774037256742765427887536613447676544132004345-2699998
Q ss_pred EEECCC--E---EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEEEECCCC
Q ss_conf 997698--5---9999987899789878544226523157776789998880589999999961985---9999798995
Q gi|254780701|r 394 GWTSGR--G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ---FLIRSKLREG 465 (495)
Q Consensus 394 ~~~~~~--~---~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~---i~v~S~~G~G 465 (495)
T Consensus 648 ~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 648 SLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred EECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 855888986634788886247799879998543310121013-7313776506899999999708887650166645875
Q ss_pred EEEEEEECHHHCCCC
Q ss_conf 298898472470746
Q gi|254780701|r 466 VEVIAILPNTRVLNF 480 (495)
Q Consensus 466 t~f~v~LP~~~~~~~ 480 (495)
T Consensus 727 ScF~F~lpl~~~~~~ 741 (1052)
T TIGR02956 727 SCFWFTLPLARGKPA 741 (1052)
T ss_pred CEEEEECCCCCCCHH
T ss_conf 022124231337500