Query gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 495
No_of_seqs 175 out of 21465
Neff 7.9
Searched_HMMs 39220
Date Mon May 30 00:03:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780701.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02956 TMAO_torS TMAO reduc 100.0 0 0 549.1 31.7 238 237-480 493-741 (1052)
2 PRK10841 hybrid sensory kinase 100.0 0 0 553.3 29.0 245 227-477 448-693 (947)
3 PRK11107 hybrid sensory histid 100.0 0 0 528.6 42.4 248 224-476 268-520 (920)
4 PRK11466 hybrid sensory histid 100.0 0 0 526.4 39.1 253 227-489 422-677 (912)
5 PRK11091 aerobic respiration c 100.0 0 0 509.0 44.8 241 237-482 271-513 (779)
6 PRK09959 hybrid sensory histid 100.0 0 0 512.9 29.6 248 225-478 688-940 (1197)
7 TIGR02966 phoR_proteo phosphat 100.0 0 0 509.7 23.5 229 242-472 111-339 (339)
8 PRK09303 adaptive-response sen 100.0 0 0 486.1 30.1 242 232-476 132-377 (378)
9 PRK10490 sensor protein KdpD; 100.0 0 0 447.3 46.1 226 243-475 658-883 (895)
10 PRK11006 phoR phosphate regulo 100.0 0 0 443.8 36.2 229 246-480 201-429 (431)
11 PRK09835 sensor kinase CusS; P 100.0 0 0 424.2 37.3 242 227-475 240-481 (482)
12 PRK10549 signal transduction h 100.0 0 0 425.5 36.1 246 227-479 219-464 (467)
13 PRK11100 sensory histidine kin 100.0 0 0 421.1 34.8 239 228-475 236-474 (475)
14 PRK11360 sensory histidine kin 100.0 0 0 417.8 29.1 219 248-480 387-605 (607)
15 PRK10755 sensor protein BasS/P 100.0 1.4E-43 0 392.5 39.3 233 227-474 121-355 (355)
16 PRK10337 sensor protein QseC; 100.0 4.6E-44 0 396.6 35.2 235 227-472 212-446 (446)
17 PRK09470 cpxA two-component se 100.0 1.3E-44 0 401.6 32.0 239 227-476 221-459 (461)
18 COG2205 KdpD Osmosensitive K+ 100.0 5.2E-43 0 387.6 39.3 236 234-476 646-881 (890)
19 PRK10364 sensor protein ZraS; 100.0 5.5E-44 0 396.0 34.0 214 248-475 237-450 (455)
20 TIGR01386 cztS_silS_copS heavy 100.0 2.8E-45 0 406.9 25.2 253 215-473 227-483 (483)
21 PRK10604 sensor protein RstB; 100.0 1E-43 0 393.6 32.8 237 228-478 191-427 (433)
22 PRK13557 histidine kinase; Pro 100.0 4.3E-44 0 396.9 30.0 226 246-480 158-398 (538)
23 PRK10815 sensor protein PhoQ; 100.0 4.3E-41 1.4E-45 371.2 32.8 240 226-479 243-482 (484)
24 PRK09467 envZ osmolarity senso 100.0 1.4E-40 2.8E-45 366.9 33.5 229 226-475 208-436 (437)
25 PRK13837 two-component VirA-li 100.0 2.9E-40 7E-45 364.1 33.0 223 248-484 452-688 (831)
26 COG5002 VicK Signal transducti 100.0 1.2E-42 0 384.6 20.3 232 244-478 220-452 (459)
27 PRK11073 glnL nitrogen regulat 100.0 7.3E-38 1.9E-42 343.5 26.8 209 248-474 129-347 (348)
28 COG4251 Bacteriophytochrome (l 100.0 3.5E-34 9E-39 311.9 25.3 251 221-480 496-747 (750)
29 COG4191 Signal transduction hi 100.0 3.2E-31 8.2E-36 286.6 36.7 239 227-475 360-602 (603)
30 PRK11086 sensory histidine kin 100.0 2.6E-31 6.6E-36 287.3 26.6 195 248-476 337-536 (541)
31 COG0642 BaeS Signal transducti 100.0 7.8E-28 2E-32 257.5 30.3 219 248-478 114-333 (336)
32 COG3852 NtrB Signal transducti 100.0 8.3E-29 2.1E-33 265.9 23.7 213 248-476 131-356 (363)
33 TIGR02916 PEP_his_kin putative 100.0 1.8E-28 4.7E-33 262.9 24.0 199 256-473 493-696 (696)
34 COG5000 NtrY Signal transducti 100.0 2.7E-23 6.9E-28 218.6 34.1 205 256-474 493-708 (712)
35 COG4192 Signal transduction hi 99.9 1.2E-21 3.1E-26 204.4 32.8 215 250-475 452-667 (673)
36 smart00387 HATPase_c Histidine 99.9 3.4E-23 8.7E-28 217.7 14.7 111 363-475 1-111 (111)
37 pfam02518 HATPase_c Histidine 99.9 1.2E-22 2.9E-27 213.2 14.8 110 363-474 1-110 (111)
38 PRK10618 phosphotransfer inter 99.9 8.1E-20 2.1E-24 188.8 26.9 235 232-476 433-670 (881)
39 COG3290 CitA Signal transducti 99.9 3.1E-19 8E-24 183.8 24.5 193 253-477 337-534 (537)
40 cd00075 HATPase_c Histidine ki 99.9 6E-21 1.5E-25 198.5 13.2 102 368-472 1-103 (103)
41 TIGR02938 nifL_nitrog nitrogen 99.9 5.3E-19 1.4E-23 181.8 21.1 217 248-474 276-496 (496)
42 KOG0519 consensus 99.8 5.5E-22 1.4E-26 207.4 2.9 235 236-477 206-491 (786)
43 PRK13560 hypothetical protein; 99.8 1.2E-16 3.2E-21 161.5 25.0 206 238-476 594-805 (807)
44 PRK10935 nitrate/nitrite senso 99.8 4.9E-15 1.2E-19 147.8 29.1 193 254-477 366-565 (568)
45 PRK11644 sensory histidine kin 99.8 1.9E-11 4.9E-16 117.0 44.8 216 222-474 280-496 (497)
46 COG4585 Signal transduction hi 99.7 6.9E-11 1.8E-15 112.2 40.4 153 299-474 212-365 (365)
47 PRK10600 nitrate/nitrite senso 99.7 8.9E-13 2.3E-17 128.4 29.9 202 248-481 361-563 (569)
48 COG3850 NarQ Signal transducti 99.6 4.7E-10 1.2E-14 105.1 36.6 193 254-477 374-571 (574)
49 PRK10547 chemotaxis protein Ch 99.6 1.1E-12 2.9E-17 127.5 20.4 166 298-475 315-516 (662)
50 COG2972 Predicted signal trans 99.6 4.5E-10 1.2E-14 105.2 32.3 181 256-476 266-454 (456)
51 COG3851 UhpB Signal transducti 99.6 1.5E-08 3.9E-13 92.1 39.0 183 256-474 310-494 (497)
52 COG0643 CheA Chemotaxis protei 99.5 1.4E-11 3.7E-16 118.1 19.9 170 294-475 366-574 (716)
53 COG3920 Signal transduction hi 99.4 2.4E-09 6.1E-14 99.0 23.5 194 249-477 19-218 (221)
54 PRK03660 anti-sigma F factor; 99.2 2.2E-10 5.7E-15 107.8 11.0 100 365-475 37-139 (146)
55 COG3275 LytS Putative regulato 99.2 3.2E-06 8.3E-11 72.2 40.0 133 323-478 414-555 (557)
56 pfam00512 HisKA His Kinase A ( 99.2 9.4E-11 2.4E-15 111.1 7.9 66 248-317 1-66 (66)
57 PRK13559 hypothetical protein; 99.0 1.5E-07 3.9E-12 83.5 19.1 185 249-475 172-362 (363)
58 COG4564 Signal transduction hi 99.0 8.5E-06 2.2E-10 68.6 25.9 184 260-477 262-450 (459)
59 smart00388 HisKA His Kinase A 98.9 4.9E-09 1.2E-13 96.4 8.3 65 249-317 2-66 (66)
60 KOG0787 consensus 98.9 7.8E-07 2E-11 77.5 19.2 214 258-474 146-380 (414)
61 cd00082 HisKA Histidine Kinase 98.8 1.3E-08 3.4E-13 92.7 6.9 64 247-313 2-65 (65)
62 COG1389 DNA topoisomerase VI, 98.5 1.5E-06 3.8E-11 75.1 9.8 113 362-474 31-150 (538)
63 PRK04184 DNA topoisomerase VI 98.3 9E-06 2.3E-10 68.4 10.3 107 363-473 31-148 (533)
64 PRK04069 serine-protein kinase 98.3 2.1E-05 5.5E-10 65.2 11.5 98 367-473 42-142 (158)
65 KOG0519 consensus 98.0 8.1E-06 2.1E-10 68.8 5.2 225 232-459 369-619 (786)
66 TIGR01052 top6b DNA topoisomer 98.0 2E-05 5.1E-10 65.4 7.2 107 362-468 22-143 (662)
67 COG2172 RsbW Anti-sigma regula 97.8 0.00047 1.2E-08 53.7 11.1 92 363-465 36-131 (146)
68 PRK00095 mutL DNA mismatch rep 97.6 0.00021 5.4E-09 56.6 6.7 27 324-350 479-505 (612)
69 TIGR00585 mutl DNA mismatch re 97.5 0.00032 8.2E-09 55.1 6.5 55 367-425 22-76 (367)
70 TIGR01925 spIIAB anti-sigma F 97.4 0.00076 1.9E-08 51.9 6.7 95 366-471 38-135 (137)
71 COG0323 MutL DNA mismatch repa 97.0 0.0018 4.6E-08 48.6 5.4 21 363-383 313-333 (638)
72 pfam10090 DUF2328 Uncharacteri 96.6 0.096 2.5E-06 33.8 18.0 170 265-461 2-173 (181)
73 COG5381 Uncharacterized protei 95.8 0.031 8E-07 38.0 6.0 92 370-466 66-168 (184)
74 PRK05218 heat shock protein 90 95.2 0.048 1.2E-06 36.4 5.3 50 371-426 500-549 (612)
75 COG0326 HtpG Molecular chapero 94.6 0.087 2.2E-06 34.2 5.2 36 388-427 521-556 (623)
76 COG5385 Uncharacterized protei 94.2 0.54 1.4E-05 27.4 19.9 194 252-473 18-213 (214)
77 TIGR01924 rsbW_low_gc anti-sig 94.2 0.065 1.7E-06 35.3 3.9 110 362-478 38-151 (161)
78 PRK05644 gyrB DNA gyrase subun 94.2 0.013 3.4E-07 41.2 0.4 13 364-376 553-565 (725)
79 PTZ00272 heat shock protein 83 94.0 0.14 3.6E-06 32.4 5.3 14 443-456 655-668 (701)
80 KOG1979 consensus 94.0 0.08 2.1E-06 34.5 4.1 18 365-382 502-519 (694)
81 PRK05559 DNA topoisomerase IV 93.5 0.017 4.2E-07 40.4 -0.2 79 363-450 498-584 (633)
82 PTZ00130 heat shock protein 90 93.1 0.26 6.6E-06 30.2 5.4 28 388-418 133-160 (824)
83 KOG1978 consensus 92.8 0.14 3.5E-06 32.6 3.6 21 448-468 558-578 (672)
84 smart00433 TOP2c Topoisomerase 92.1 0.026 6.7E-07 38.7 -0.7 30 363-392 464-493 (594)
85 TIGR01058 parE_Gpos DNA topois 92.0 0.29 7.3E-06 29.8 4.5 95 355-456 28-139 (655)
86 PTZ00109 DNA gyrase subunit b; 92.0 0.029 7.3E-07 38.4 -0.6 12 257-268 627-638 (941)
87 TIGR01059 gyrB DNA gyrase, B s 89.6 0.39 9.8E-06 28.7 3.3 28 252-279 609-636 (818)
88 PRK13374 purine nucleoside pho 88.9 1 2.7E-05 25.0 5.1 68 360-430 18-92 (233)
89 KOG1977 consensus 88.4 1.2 3E-05 24.5 5.1 16 301-316 471-486 (1142)
90 COG0187 GyrB Type IIA topoisom 87.7 0.059 1.5E-06 35.7 -1.9 26 364-392 502-530 (635)
91 PRK05819 deoD purine nucleosid 86.6 2.2 5.6E-05 22.2 5.6 68 360-430 17-91 (235)
92 TIGR01055 parE_Gneg DNA topois 86.2 1.1 2.7E-05 24.9 3.9 92 363-456 29-133 (647)
93 COG0813 DeoD Purine-nucleoside 83.3 1.3 3.3E-05 24.2 3.2 52 361-415 19-70 (236)
94 KOG0020 consensus 81.0 3.5 9E-05 20.4 4.7 17 251-267 354-370 (785)
95 KOG0019 consensus 80.5 3.5 8.9E-05 20.5 4.6 21 388-409 535-555 (656)
96 KOG0355 consensus 78.2 3 7.7E-05 21.0 3.7 86 363-455 709-812 (842)
97 TIGR01622 SF-CC1 splicing fact 78.0 3.3 8.4E-05 20.7 3.8 48 412-459 247-304 (531)
98 COG2820 Udp Uridine phosphoryl 75.8 5.4 0.00014 18.8 6.2 67 360-430 21-93 (248)
99 PRK08383 putative monovalent c 75.0 5.7 0.00014 18.7 4.6 50 374-426 110-160 (167)
100 pfam01899 MNHE Na+/H+ ion anti 74.4 5.8 0.00015 18.6 5.0 50 373-426 50-99 (106)
101 PRK11178 uridine phosphorylase 69.1 7.4 0.00019 17.7 5.7 67 360-430 21-93 (251)
102 COG5001 Predicted signal trans 69.1 7.4 0.00019 17.7 13.8 107 34-141 20-134 (663)
103 PRK13858 type IV secretion sys 64.9 8.8 0.00022 17.0 6.3 44 257-310 52-95 (148)
104 KOG0859 consensus 63.8 6.7 0.00017 18.0 2.8 57 368-425 29-88 (217)
105 PRK03124 S-adenosylmethionine 63.5 9.3 0.00024 16.8 6.5 82 347-429 5-104 (127)
106 KOG1478 consensus 62.6 4.3 0.00011 19.7 1.6 10 307-316 205-214 (341)
107 PRK08965 putative monovalent c 61.1 10 0.00026 16.5 4.3 49 373-426 106-154 (161)
108 TIGR01815 TrpE-clade3 anthrani 61.1 5.6 0.00014 18.7 2.0 71 403-483 570-646 (726)
109 pfam11171 DUF2958 Protein of u 60.3 10 0.00027 16.4 4.8 45 382-426 32-83 (112)
110 TIGR02153 gatD_arch glutamyl-t 56.1 4.5 0.00012 19.5 0.8 71 381-461 268-345 (413)
111 pfam07328 VirD1 T-DNA border e 55.8 12 0.00031 15.9 6.3 44 257-310 52-95 (147)
112 PRK12651 putative monovalent c 54.6 13 0.00032 15.7 4.2 49 373-426 103-151 (157)
113 COG4014 Uncharacterized protei 54.4 12 0.00031 15.8 2.7 39 376-414 11-50 (97)
114 COG3967 DltE Short-chain dehyd 51.0 9.9 0.00025 16.6 1.8 13 264-276 79-91 (245)
115 PRK06279 putative monovalent c 49.1 15 0.00038 15.1 2.9 63 353-425 33-96 (101)
116 KOG3618 consensus 49.0 15 0.00038 15.0 22.4 77 254-351 310-386 (1318)
117 TIGR01083 nth endonuclease III 46.0 8.7 0.00022 17.1 0.9 16 362-377 151-166 (192)
118 TIGR00942 2a6301s05 multicompo 45.3 17 0.00043 14.6 2.8 65 355-424 78-143 (149)
119 pfam02878 PGM_PMM_I Phosphoglu 45.2 17 0.00043 14.6 3.6 54 375-428 81-135 (138)
120 cd03089 PMM_PGM The phosphoman 43.4 18 0.00046 14.4 4.3 16 379-394 399-414 (443)
121 PRK12859 3-ketoacyl-(acyl-carr 41.3 18 0.00045 14.5 1.9 28 363-391 224-251 (257)
122 PRK08382 putative monovalent c 40.6 20 0.0005 14.1 7.8 69 352-424 123-195 (201)
123 COG2865 Predicted transcriptio 39.5 20 0.00052 13.9 5.4 126 327-474 237-380 (467)
124 KOG0145 consensus 39.5 20 0.00052 13.9 3.3 32 398-429 276-307 (360)
125 PRK01706 S-adenosylmethionine 39.4 20 0.00052 13.9 6.0 78 347-425 7-103 (123)
126 KOG4013 consensus 39.3 20 0.00052 13.9 2.2 27 438-466 163-189 (255)
127 pfam09818 ABC_ATPase Predicted 39.2 20 0.00052 13.9 5.2 95 298-415 148-244 (447)
128 TIGR01605 PYST-D Plasmodium yo 39.1 16 0.00041 14.8 1.4 14 436-449 10-23 (55)
129 pfam09315 DUF1973 Domain of un 39.0 21 0.00052 13.9 2.6 12 400-411 155-166 (178)
130 PRK05717 oxidoreductase; Valid 38.9 17 0.00043 14.6 1.5 30 361-391 214-243 (255)
131 TIGR01661 ELAV_HUD_SF ELAV/HuD 38.6 16 0.00041 14.8 1.4 21 405-425 358-378 (436)
132 PRK07831 short chain dehydroge 38.4 17 0.00043 14.6 1.4 29 362-391 228-256 (261)
133 PRK08159 enoyl-(acyl carrier p 37.8 21 0.00054 13.7 1.9 22 367-393 168-189 (272)
134 TIGR03330 SAM_DCase_Bsu S-aden 37.2 22 0.00055 13.7 6.6 80 347-427 4-101 (112)
135 TIGR02494 PFLE_PFLC glycyl-rad 37.1 18 0.00047 14.3 1.4 59 307-371 184-245 (305)
136 PRK12937 short chain dehydroge 37.0 19 0.00048 14.2 1.5 11 381-393 170-180 (245)
137 TIGR01137 cysta_beta cystathio 36.8 22 0.00056 13.6 2.5 13 327-339 380-392 (527)
138 PRK11564 stationary phase indu 36.6 22 0.00056 13.6 5.1 18 401-418 340-357 (426)
139 PRK07062 short chain dehydroge 36.6 22 0.00057 13.6 2.8 21 363-383 230-250 (265)
140 PRK09618 flgD flagellar basal 35.9 23 0.00058 13.5 2.9 48 374-422 92-143 (146)
141 PRK08219 short chain dehydroge 35.8 23 0.00058 13.5 2.3 13 407-419 190-202 (226)
142 TIGR00107 deoD purine nucleosi 35.6 23 0.00058 13.5 1.9 50 362-414 16-65 (234)
143 PRK09009 C factor cell-cell si 35.5 20 0.00051 14.0 1.4 28 362-390 200-227 (235)
144 TIGR02984 Sig-70_plancto1 RNA 35.4 23 0.00059 13.5 3.5 17 366-382 66-82 (190)
145 PRK07041 short chain dehydroge 34.7 22 0.00055 13.7 1.5 26 362-390 207-232 (240)
146 pfam00106 adh_short short chai 34.7 22 0.00055 13.7 1.5 12 363-374 62-73 (167)
147 PRK12748 3-ketoacyl-(acyl-carr 34.5 24 0.00061 13.3 1.9 13 379-393 182-194 (257)
148 PRK06935 2-deoxy-D-gluconate 3 34.4 22 0.00055 13.7 1.5 21 363-383 224-244 (258)
149 PRK07097 gluconate 5-dehydroge 34.1 22 0.00057 13.6 1.5 30 362-392 225-254 (265)
150 TIGR01615 A_thal_3542 uncharac 34.0 24 0.00061 13.3 1.9 32 354-386 86-118 (144)
151 TIGR00868 hCaCC calcium-activa 34.0 24 0.00062 13.3 2.9 73 401-489 459-543 (874)
152 PRK06841 short chain dehydroge 33.8 23 0.00058 13.5 1.5 29 362-391 220-248 (255)
153 pfam06816 NOD NOTCH protein. N 33.7 24 0.00062 13.2 2.6 16 249-264 24-39 (56)
154 PRK12384 sorbitol-6-phosphate 33.4 24 0.0006 13.4 1.5 29 362-391 224-252 (259)
155 PRK06300 enoyl-(acyl carrier p 33.3 25 0.00063 13.2 1.6 24 363-387 254-277 (298)
156 PRK06947 glucose-1-dehydrogena 33.1 23 0.00059 13.4 1.4 27 363-390 221-247 (252)
157 PRK10263 DNA translocase FtsK; 33.1 25 0.00063 13.2 14.0 10 72-81 67-76 (1355)
158 TIGR01179 galE UDP-glucose 4-e 32.8 25 0.00064 13.1 3.3 74 285-372 232-314 (341)
159 PRK07577 short chain dehydroge 32.5 25 0.00063 13.2 1.5 30 361-391 199-228 (234)
160 KOG3822 consensus 32.4 17 0.00044 14.5 0.7 29 443-473 410-438 (516)
161 PRK07576 short chain dehydroge 32.4 23 0.00058 13.5 1.3 35 361-396 216-250 (260)
162 PRK08340 glucose-1-dehydrogena 32.3 25 0.00064 13.1 1.5 29 362-391 221-249 (259)
163 cd01213 tensin Tensin Phosphot 32.3 16 0.00041 14.8 0.5 51 365-429 24-74 (138)
164 PRK07069 short chain dehydroge 32.2 25 0.00064 13.1 1.5 31 361-392 215-245 (251)
165 PRK06940 short chain dehydroge 32.0 26 0.00066 13.0 3.0 34 361-395 233-266 (277)
166 PRK05884 short chain dehydroge 32.0 24 0.00062 13.3 1.4 20 444-463 150-171 (223)
167 PRK07774 short chain dehydroge 31.9 26 0.00065 13.0 1.5 21 363-383 215-235 (250)
168 PRK08213 gluconate 5-dehydroge 31.8 26 0.00066 13.0 1.5 21 363-383 225-245 (259)
169 PRK08936 glucose-1-dehydrogena 31.8 26 0.00066 13.0 2.7 29 362-391 218-246 (261)
170 PRK08085 gluconate 5-dehydroge 31.7 26 0.00066 13.0 1.5 30 361-391 217-246 (254)
171 TIGR02749 prenyl_cyano solanes 31.6 26 0.00067 13.0 1.6 24 290-313 198-224 (325)
172 pfam05127 DUF699 Putative ATPa 31.3 26 0.00067 13.0 1.7 42 403-444 78-120 (160)
173 PRK07856 short chain dehydroge 31.3 26 0.00067 13.0 1.5 29 362-391 208-236 (254)
174 PRK10538 3-hydroxy acid dehydr 31.2 26 0.00067 12.9 2.7 11 381-393 164-174 (248)
175 MTH00204 ND4 NADH dehydrogenas 31.1 24 0.00061 13.3 1.2 20 367-386 466-485 (486)
176 PRK08177 short chain dehydroge 31.1 27 0.00068 12.9 2.4 13 379-393 162-174 (225)
177 PRK06550 fabG 3-ketoacyl-(acyl 31.1 25 0.00064 13.1 1.3 29 362-391 202-230 (237)
178 PRK09135 pteridine reductase; 30.9 27 0.00068 12.9 1.5 36 379-421 171-206 (249)
179 pfam09190 DALR_2 DALR domain. 30.8 27 0.00068 12.9 2.9 15 251-265 1-15 (62)
180 PRK05557 fabG 3-ketoacyl-(acyl 30.7 27 0.00069 12.9 1.5 20 364-383 215-234 (248)
181 PRK06057 short chain dehydroge 30.7 27 0.00069 12.9 1.5 30 362-392 215-244 (255)
182 PRK07523 gluconate 5-dehydroge 30.6 25 0.00065 13.1 1.3 29 362-391 215-243 (251)
183 PRK12935 acetoacetyl-CoA reduc 30.6 27 0.00069 12.9 1.4 17 363-379 215-231 (247)
184 PRK12481 2-deoxy-D-gluconate 3 30.6 27 0.00069 12.9 1.5 30 362-392 216-245 (251)
185 PRK12428 3-alpha-hydroxysteroi 30.5 26 0.00067 13.0 1.4 31 361-392 217-247 (261)
186 PRK12936 3-ketoacyl-(acyl-carr 30.4 27 0.00069 12.8 1.5 29 362-391 210-238 (245)
187 PRK06114 short chain dehydroge 30.4 26 0.00067 13.0 1.3 21 363-383 228-248 (262)
188 PRK12828 short chain dehydroge 30.4 27 0.00068 12.9 1.4 28 363-391 205-232 (239)
189 pfam11212 DUF2999 Protein of u 30.3 27 0.00069 12.8 4.5 54 261-321 27-81 (82)
190 PRK08589 short chain dehydroge 30.3 26 0.00066 13.0 1.3 29 362-391 220-248 (272)
191 PRK09186 flagellin modificatio 30.1 27 0.0007 12.8 1.5 18 365-382 224-241 (255)
192 TIGR02035 D_Ser_am_lyase D-ser 30.1 19 0.00048 14.2 0.6 32 313-353 347-378 (431)
193 PRK08945 short chain dehydroge 30.1 27 0.0007 12.8 1.4 13 379-393 181-193 (245)
194 pfam11505 DUF3216 Protein of u 30.0 28 0.0007 12.8 4.2 38 265-302 43-80 (96)
195 PRK06227 consensus 29.9 28 0.0007 12.8 1.5 29 362-391 216-244 (256)
196 PRK05565 fabG 3-ketoacyl-(acyl 29.9 28 0.0007 12.8 1.5 28 363-391 214-241 (247)
197 PRK12742 oxidoreductase; Provi 29.7 28 0.00071 12.8 1.4 21 363-383 204-224 (237)
198 PRK07063 short chain dehydroge 29.7 28 0.00071 12.7 1.5 30 361-391 220-249 (259)
199 PRK07707 consensus 29.7 28 0.00071 12.7 1.5 29 362-391 205-233 (239)
200 TIGR02502 type_III_YscX type I 29.6 28 0.00071 12.7 3.6 70 306-377 55-124 (126)
201 PRK07074 short chain dehydroge 29.5 28 0.00071 12.8 1.3 34 362-396 208-241 (256)
202 PRK08339 short chain dehydroge 29.4 27 0.00068 12.9 1.2 30 361-391 225-254 (263)
203 PRK06398 aldose dehydrogenase; 29.1 28 0.00072 12.7 1.5 30 361-391 212-241 (256)
204 pfam03281 Mab-21 Mab-21 protei 28.9 29 0.00073 12.6 4.0 22 364-385 124-145 (360)
205 PRK08277 D-mannonate oxidoredu 28.8 29 0.00073 12.6 2.9 21 363-383 240-261 (278)
206 PRK06171 sorbitol-6-phosphate 28.8 29 0.00073 12.6 1.5 29 362-391 231-259 (266)
207 PRK12744 short chain dehydroge 28.8 29 0.00073 12.6 1.5 15 364-378 225-239 (257)
208 cd01090 Creatinase Creatine am 28.7 26 0.00067 13.0 1.1 58 409-471 130-195 (228)
209 PRK12939 short chain dehydroge 28.7 29 0.00074 12.6 1.4 30 361-391 214-243 (250)
210 PRK06138 short chain dehydroge 28.5 29 0.00074 12.6 1.3 31 361-392 216-246 (252)
211 PRK08267 short chain dehydroge 28.3 29 0.00074 12.6 1.4 12 380-393 165-176 (258)
212 PRK07067 sorbitol dehydrogenas 28.1 29 0.00075 12.5 1.5 21 363-383 222-242 (256)
213 PRK09242 tropinone reductase; 27.8 30 0.00076 12.5 2.9 29 362-391 221-249 (258)
214 PRK12829 short chain dehydroge 27.7 30 0.00076 12.5 1.4 22 362-383 229-250 (264)
215 PRK06124 gluconate 5-dehydroge 27.7 30 0.00076 12.5 1.5 29 362-391 223-251 (259)
216 pfam07492 Trehalase_Ca-bi Neut 27.7 30 0.00076 12.5 1.8 17 396-412 9-25 (30)
217 PRK12827 short chain dehydroge 27.5 30 0.00077 12.5 1.4 30 361-391 217-246 (251)
218 PRK08278 short chain dehydroge 27.5 30 0.00077 12.5 2.9 21 363-383 217-237 (273)
219 PRK08226 short chain dehydroge 27.5 30 0.00077 12.5 1.3 29 362-391 221-249 (263)
220 PRK07478 short chain dehydroge 27.4 30 0.00077 12.4 1.5 27 362-389 217-243 (254)
221 PRK06924 short chain dehydroge 27.3 30 0.00077 12.4 2.8 27 363-391 221-247 (251)
222 pfam02675 AdoMet_dc S-adenosyl 26.9 31 0.00078 12.4 6.5 70 357-427 9-96 (107)
223 PRK12893 allantoate amidohydro 26.9 31 0.00078 12.4 4.9 50 328-382 296-345 (408)
224 PRK12823 benD 1,6-dihydroxycyc 26.9 31 0.00078 12.4 2.8 19 364-382 228-246 (260)
225 PRK07533 enoyl-(acyl carrier p 26.8 31 0.00079 12.4 1.4 19 364-382 220-238 (254)
226 PRK08265 short chain dehydroge 26.7 31 0.00079 12.4 1.5 35 361-396 211-245 (261)
227 PRK12824 acetoacetyl-CoA reduc 26.7 31 0.00079 12.3 3.0 30 361-391 209-238 (245)
228 KOG0147 consensus 26.5 31 0.00079 12.3 1.3 49 416-473 447-498 (549)
229 PRK06463 fabG 3-ketoacyl-(acyl 26.4 31 0.0008 12.3 1.5 24 363-387 215-238 (254)
230 PRK12938 acetyacetyl-CoA reduc 26.4 31 0.0008 12.3 1.4 29 362-391 211-239 (246)
231 TIGR01818 ntrC nitrogen regula 26.3 31 0.0008 12.3 3.7 133 238-387 308-449 (471)
232 PRK12745 3-ketoacyl-(acyl-carr 26.3 31 0.0008 12.3 1.4 31 361-392 221-251 (259)
233 PRK07370 enoyl-(acyl carrier p 26.1 32 0.00081 12.3 1.6 23 369-393 166-189 (259)
234 COG1863 MnhE Multisubunit Na+/ 26.0 32 0.00081 12.3 3.1 51 371-426 101-151 (158)
235 pfam09474 Type_III_YscX Type I 25.8 32 0.00081 12.2 2.1 65 307-377 55-119 (121)
236 pfam05848 CtsR Firmicute trans 25.8 32 0.00081 12.2 3.3 94 327-429 2-109 (151)
237 PRK12826 3-ketoacyl-(acyl-carr 25.7 32 0.00082 12.2 2.8 28 362-390 217-244 (253)
238 PRK07231 fabG 3-ketoacyl-(acyl 25.7 32 0.00082 12.2 2.6 28 362-390 216-243 (250)
239 PRK07102 short chain dehydroge 25.7 32 0.00082 12.2 2.4 11 381-393 165-175 (243)
240 TIGR02457 TreS_Cterm trehalose 25.7 32 0.00082 12.2 5.3 27 285-311 348-374 (568)
241 TIGR00519 asnASE_I L-asparagin 25.5 29 0.00073 12.7 0.8 49 403-456 222-276 (347)
242 PRK06701 short chain dehydroge 25.4 32 0.00083 12.2 1.3 30 361-391 252-281 (289)
243 PRK06500 short chain dehydroge 25.4 32 0.00083 12.2 2.9 21 363-383 215-235 (249)
244 PRK06125 short chain dehydroge 25.4 32 0.00083 12.2 1.5 30 362-392 221-250 (259)
245 PRK06077 fabG 3-ketoacyl-(acyl 25.3 33 0.00083 12.2 1.4 15 363-377 213-227 (249)
246 PRK05653 fabG 3-ketoacyl-(acyl 24.9 33 0.00084 12.1 1.5 29 362-391 212-240 (246)
247 PRK05867 short chain dehydroge 24.8 33 0.00085 12.1 2.7 29 362-391 218-246 (253)
248 PRK06505 enoyl-(acyl carrier p 24.7 33 0.00085 12.1 1.7 22 367-393 165-186 (271)
249 TIGR03206 benzo_BadH 2-hydroxy 24.7 33 0.00085 12.1 1.5 29 362-391 216-244 (250)
250 pfam07165 DUF1397 Protein of u 24.7 33 0.00085 12.1 3.5 20 363-382 98-117 (216)
251 PRK06079 enoyl-(acyl carrier p 24.6 33 0.00085 12.1 1.6 12 380-393 173-184 (252)
252 PRK07775 short chain dehydroge 24.6 33 0.00085 12.1 1.1 15 411-425 199-213 (275)
253 PRK09730 hypothetical protein; 24.6 33 0.00085 12.1 1.2 26 363-389 216-241 (247)
254 PRK07814 short chain dehydroge 24.5 34 0.00086 12.1 1.5 32 361-393 218-249 (263)
255 pfam08066 PMC2NT PMC2NT (NUC01 24.5 34 0.00086 12.0 6.3 28 289-316 25-52 (91)
256 PRK08993 2-deoxy-D-gluconate 3 24.4 34 0.00086 12.0 1.5 29 362-391 218-246 (253)
257 PRK07792 fabG 3-ketoacyl-(acyl 24.0 34 0.00087 12.0 1.5 61 364-429 221-288 (303)
258 PRK07479 consensus 23.9 34 0.00088 12.0 2.8 28 362-390 218-245 (252)
259 PRK12720 secretion system appa 23.8 35 0.00088 11.9 4.6 96 367-466 556-659 (681)
260 PRK06181 short chain dehydroge 23.7 35 0.00088 11.9 1.1 17 408-424 206-223 (263)
261 TIGR02110 PQQ_syn_pqqF coenzym 23.6 18 0.00045 14.5 -0.6 56 331-387 494-556 (737)
262 PRK06346 consensus 23.6 35 0.00089 11.9 1.5 28 363-391 218-245 (251)
263 PRK08594 enoyl-(acyl carrier p 23.6 35 0.00089 11.9 1.5 29 362-391 220-248 (256)
264 PRK05716 methionine aminopepti 23.5 14 0.00037 15.2 -1.0 10 462-471 193-202 (252)
265 TIGR01120 rpiB ribose 5-phosph 23.4 26 0.00065 13.1 0.2 37 344-382 22-59 (143)
266 PRK09290 allantoate amidohydro 23.3 35 0.0009 11.9 4.5 49 328-381 295-343 (412)
267 PRK06997 enoyl-(acyl carrier p 23.3 35 0.0009 11.9 1.4 20 364-383 221-240 (260)
268 PRK08643 acetoin reductase; Va 23.3 35 0.0009 11.9 1.5 30 361-391 220-249 (256)
269 PRK07060 short chain dehydroge 23.2 35 0.0009 11.9 1.5 29 362-391 210-238 (245)
270 PRK07890 short chain dehydroge 23.2 35 0.0009 11.9 1.4 20 363-382 224-243 (258)
271 PRK06182 short chain dehydroge 23.2 35 0.0009 11.9 2.5 14 326-339 221-234 (273)
272 TIGR03575 selen_PSTK_euk L-ser 23.1 36 0.00091 11.8 6.5 16 238-253 283-298 (340)
273 PRK11728 hypothetical protein; 23.0 36 0.00091 11.8 2.1 13 362-374 145-157 (400)
274 pfam00766 ETF_alpha Electron t 22.8 36 0.00092 11.8 2.0 26 436-462 13-42 (86)
275 PRK06720 hypothetical protein; 22.7 36 0.00092 11.8 1.5 11 411-421 111-121 (169)
276 pfam10638 Sfi1_C Spindle body 22.5 19 0.00049 14.1 -0.5 94 254-377 3-96 (108)
277 TIGR01645 half-pint poly-U bin 22.4 36 0.00093 11.7 2.5 37 403-439 244-286 (791)
278 TIGR02307 RNA_lig_RNL2 RNA lig 22.4 36 0.00093 11.7 2.6 18 362-379 394-411 (421)
279 PRK02770 S-adenosylmethionine 22.3 37 0.00093 11.7 6.6 81 345-426 16-114 (139)
280 PRK06172 short chain dehydroge 22.2 37 0.00094 11.7 1.5 29 362-391 218-246 (253)
281 pfam06553 BNIP3 BNIP3. This fa 22.2 9.6 0.00024 16.7 -2.1 15 436-450 177-191 (197)
282 PRK07889 enoyl-(acyl carrier p 22.2 37 0.00094 11.7 1.3 28 363-391 220-247 (256)
283 pfam00207 A2M Alpha-2-macroglo 22.0 37 0.00094 11.7 1.3 45 380-425 7-57 (92)
284 PRK08220 2,3-dihydroxybenzoate 22.0 37 0.00094 11.7 1.5 30 362-392 217-246 (253)
285 TIGR00689 rpiB_lacA_lacB sugar 22.0 37 0.00095 11.7 1.0 16 365-380 42-57 (146)
286 PRK06198 short chain dehydroge 21.9 37 0.00095 11.7 1.5 30 361-391 221-250 (268)
287 PRK07791 short chain dehydroge 21.6 38 0.00096 11.6 1.5 29 362-391 224-252 (285)
288 pfam07568 HisKA_2 Histidine ki 21.6 38 0.00096 11.6 7.5 72 256-340 2-73 (76)
289 PRK07806 short chain dehydroge 21.6 38 0.00096 11.6 1.4 15 374-388 115-129 (248)
290 PRK05875 short chain dehydroge 21.5 38 0.00096 11.6 2.6 30 361-391 219-248 (277)
291 PRK06523 short chain dehydroge 21.5 38 0.00097 11.6 1.3 29 362-391 224-252 (260)
292 PRK12825 fabG 3-ketoacyl-(acyl 21.4 38 0.00097 11.6 1.5 29 362-391 215-243 (250)
293 PRK12743 acetoin dehydrogenase 21.3 38 0.00097 11.6 1.4 29 362-391 211-239 (253)
294 PRK06101 short chain dehydroge 21.3 38 0.00097 11.6 2.4 22 367-393 147-168 (241)
295 PRK12457 2-dehydro-3-deoxyphos 21.3 38 0.00097 11.6 3.5 16 407-422 248-263 (281)
296 KOG1458 consensus 21.3 38 0.00097 11.6 6.2 34 359-395 74-108 (343)
297 PRK08642 fabG 3-ketoacyl-(acyl 21.2 38 0.00098 11.6 1.0 35 379-419 175-209 (254)
298 PRK12747 short chain dehydroge 20.9 39 0.00099 11.5 1.6 29 362-391 218-246 (252)
299 PRK12890 allantoate amidohydro 20.9 39 0.00099 11.5 4.5 49 328-381 296-344 (412)
300 PRK10857 DNA-binding transcrip 20.8 39 0.00099 11.5 1.1 34 307-340 53-88 (164)
301 PRK08063 enoyl-(acyl carrier p 20.5 39 0.001 11.5 1.3 29 362-391 214-242 (250)
302 cd01569 PBEF_like pre-B-cell c 20.5 39 0.001 11.4 2.0 65 316-385 284-355 (407)
303 PRK08251 short chain dehydroge 20.5 39 0.001 11.4 1.3 12 380-393 170-181 (248)
304 PRK08628 short chain dehydroge 20.4 40 0.001 11.4 2.8 30 361-391 217-246 (258)
305 PRK06949 short chain dehydroge 20.4 40 0.001 11.4 1.3 21 363-383 226-246 (258)
306 PRK05198 2-dehydro-3-deoxyphos 20.3 40 0.001 11.4 3.5 20 405-424 238-257 (264)
307 PRK12820 bifunctional aspartyl 20.2 38 0.00096 11.6 0.6 46 409-461 519-568 (706)
308 pfam05610 DUF779 Protein of un 20.1 40 0.001 11.4 2.6 22 453-474 64-85 (95)
309 PRK00476 aspS aspartyl-tRNA sy 20.1 35 0.00088 11.9 0.4 44 410-460 504-551 (587)
310 COG1105 FruK Fructose-1-phosph 20.0 40 0.001 11.4 5.1 24 403-426 102-125 (310)
No 1
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=549.07 Aligned_cols=238 Identities=37% Similarity=0.578 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988999997764201389999999998503368789378999999999999999999999999987422
Q gi|254780701|r 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 (495)
Q Consensus 237 ~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrlea 316 (495)
.||..||+||++||.|||+||||+|||||+|+|-+++|.+..+ ..+|++|++.|.+||+.|+.++||+|||||||+
T Consensus 493 kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L----~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEa 568 (1052)
T TIGR02956 493 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL----TSQQQQYLQVINRSGESLLDILNDILDYSKIEA 568 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999974887688741351132011368999975058998----888999999998622789999846754677610
Q ss_pred H--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 0--0156531011999999999999999973112210003676101-047989999887776556886067988799999
Q gi|254780701|r 317 G--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 317 g--~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~-v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
| .+.+++++||+..++.++...+...|+.||++|..+++.+.|. ..||+.||||||.|||+||||||++ |.|++++
T Consensus 569 GGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~-Gsv~l~~ 647 (1052)
T TIGR02956 569 GGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDR-GSVVLRV 647 (1052)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCC-CEEEEEE
T ss_conf 874653455677888899999999998774037256742765427887536613447676544132004345-2699998
Q ss_pred EEECCC--E---EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEEEECCCC
Q ss_conf 997698--5---9999987899789878544226523157776789998880589999999961985---9999798995
Q gi|254780701|r 394 GWTSGR--G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ---FLIRSKLREG 465 (495)
Q Consensus 394 ~~~~~~--~---~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~---i~v~S~~G~G 465 (495)
+..++. + +.|+|.|||+|||+++++.||+||.|++.. .+..+||||||||||+||++|||+ |+|+|++|+|
T Consensus 648 ~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 648 SLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred EECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 855888986634788886247799879998543310121013-7313776506899999999708887650166645875
Q ss_pred EEEEEEECHHHCCCC
Q ss_conf 298898472470746
Q gi|254780701|r 466 VEVIAILPNTRVLNF 480 (495)
Q Consensus 466 t~f~v~LP~~~~~~~ 480 (495)
|||+|+||..+-.++
T Consensus 727 ScF~F~lpl~~~~~~ 741 (1052)
T TIGR02956 727 SCFWFTLPLARGKPA 741 (1052)
T ss_pred CEEEEECCCCCCCHH
T ss_conf 022124231337500
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=0 Score=553.29 Aligned_cols=245 Identities=27% Similarity=0.413 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
...+....+.+++++||+||++||+|||+||||||||||+|+|++|+|.++.+ +++++++++.|..|++.|+.+||
T Consensus 448 ar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEIRTPLnGIlG~lELL~~t~L----~~~Qr~~l~tI~~Ss~~LL~lIN 523 (947)
T PRK10841 448 ARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVDRLVTAMNNSSSLLLKIIS 523 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999999899875856436128999999999807999----98999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610-10479899998877765568860679
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
|+||+||+|+|+++++.++|++.+++++++..+.+.|.+|++.+.+.++|+.| .+.|||.||+|||.||++||||||++
T Consensus 524 DILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A~~K~L~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~ 603 (947)
T PRK10841 524 DILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVKKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDT 603 (947)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCC
T ss_conf 99999988049847985256899999999999999999739879999799999658606889999999988777466799
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798995
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~G 465 (495)
|.|.|+++. .++.+.|+|+|||+||+++++++||+||+|+|.+.+|+++||||||+|||+|+++|||+|+++|++|+|
T Consensus 604 -G~I~L~V~~-~~~~L~fsV~DTGIGIsee~~~~LFepF~QaD~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~G 681 (947)
T PRK10841 604 -GCIILHVRV-DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMG 681 (947)
T ss_pred -CEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf -589999998-499999999982899899999988471115787543457998741999999999759958999169980
Q ss_pred EEEEEEECHHHC
Q ss_conf 298898472470
Q gi|254780701|r 466 VEVIAILPNTRV 477 (495)
Q Consensus 466 t~f~v~LP~~~~ 477 (495)
|+|+|+||....
T Consensus 682 StFtf~LPL~~~ 693 (947)
T PRK10841 682 SQFTVRIPLYGA 693 (947)
T ss_pred EEEEEEEECCCC
T ss_conf 799999756433
No 3
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=0 Score=528.60 Aligned_cols=248 Identities=35% Similarity=0.562 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998899999776420138999999999850336878937899999999999999999
Q gi|254780701|r 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 (495)
Q Consensus 224 l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~ 303 (495)
..+++|..+.+++.||++||++|++||+|+||||||||||||+|+||+++|.++.+ ++.+++|++.|.+++++|+.
T Consensus 268 ~leq~e~qn~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~ 343 (920)
T PRK11107 268 TLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLA 343 (920)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887899999999999999999999996648654219999999999856999----99999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999874220015653101199999999999999997311221000367610-10479899998877765568860
Q gi|254780701|r 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 304 Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~ 382 (495)
+|||+||+||+|+|+++++..|||+.+++++++..+.+.|+.|++.+.++++++.| .+.+|+.||+|||.||++|||||
T Consensus 344 lIndiLD~SkiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKf 423 (920)
T PRK11107 344 IINDILDFSKLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKF 423 (920)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998459836740167899999999999999999739879999789997306538999999999999999971
Q ss_pred CCCCCEEEEEEEEEC--CC--EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 679887999999976--98--59999987899789878544226523157776789998880589999999961985999
Q gi|254780701|r 383 TAIGGRVHVTVGWTS--GR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 (495)
Q Consensus 383 T~~gG~V~v~~~~~~--~~--~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v 458 (495)
|+. |.|.|+++... ++ .+.|+|+|||+|||++++++||++|+|+|.+.+|+++||||||+|||+|+++|||+|++
T Consensus 424 T~~-G~I~v~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v 502 (920)
T PRK11107 424 TES-GNIDILVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502 (920)
T ss_pred CCC-CCEEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 889-9379999999647984899999999705869999997854201567654456798774299999999980991799
Q ss_pred EEECCCCEEEEEEECHHH
Q ss_conf 979899529889847247
Q gi|254780701|r 459 RSKLREGVEVIAILPNTR 476 (495)
Q Consensus 459 ~S~~G~Gt~f~v~LP~~~ 476 (495)
+|++|+||+|+|++|...
T Consensus 503 ~S~~g~GS~F~Ftlpl~~ 520 (920)
T PRK11107 503 HSQPNRGSTFWFHLPLDL 520 (920)
T ss_pred EECCCCCEEEEEEEECCC
T ss_conf 954899748999998047
No 4
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=0 Score=526.41 Aligned_cols=253 Identities=30% Similarity=0.458 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|++..+....+||++||++|++||+|||+||||||||||+|+||+++|.++.+ ++.+++|++.|.+|+++|..+||
T Consensus 422 eL~~~~~~~~~Ar~~AE~AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~~~~l----~~~qr~~l~~I~~s~~~LL~lIn 497 (912)
T PRK11466 422 ELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA----LNAQRDDLRAITDSGESLLTILN 497 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899999999999999999999987139767759999999999847999----98999999999999999999999
Q ss_pred HHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999874220--015653101199999999999999997311221000367610-104798999988777655688606
Q gi|254780701|r 307 EILDLSRIEAG--RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 307 ~lLdlsrleag--~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T 383 (495)
|+||+||+|+| +++++.+||++.++++++...+.+.|+.|++.+.++++++.| ++++|+.+|+|||.||++||||||
T Consensus 498 DILD~SkiEaG~~~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT 577 (912)
T PRK11466 498 DILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFT 577 (912)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998189981388611568999999999999999983797899972799986086358899999999999870618
Q ss_pred CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 79887999999976985999998789978987854422652315777678999888058999999996198599997989
Q gi|254780701|r 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 (495)
Q Consensus 384 ~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G 463 (495)
++ |.|.++++. +++...|+|+|||+|||++++++||+||+|.+ ++.+||||||+|||+|+++|||+|+|+|+||
T Consensus 578 ~~-G~V~l~~~~-~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~----~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G 651 (912)
T PRK11466 578 DE-GSIVLRSRT-DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPE 651 (912)
T ss_pred CC-CEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99-679999998-69789999850899999999998844761588----9989926689999999998799799971699
Q ss_pred CCEEEEEEECHHHCCCCCCCCCCCCC
Q ss_conf 95298898472470746998764434
Q gi|254780701|r 464 EGVEVIAILPNTRVLNFIPEDNHEST 489 (495)
Q Consensus 464 ~Gt~f~v~LP~~~~~~~~p~~~~~~~ 489 (495)
+||+|+|+||.....+..|+..+++.
T Consensus 652 ~GS~F~~~LPl~~~~~~~~~~~~~~~ 677 (912)
T PRK11466 652 VGSCFCLRLPLRHATAPVPKTVNQAV 677 (912)
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 87289999977788878764334665
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=0 Score=508.97 Aligned_cols=241 Identities=27% Similarity=0.455 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988999997764201389999999998503368789378999999999999999999999999987422
Q gi|254780701|r 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 (495)
Q Consensus 237 ~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrlea 316 (495)
++.+.+|+||++||+|+|+||||||||||+|+|++++|.++.+ ++++++|++.|..|+++|..+|||+||+||+|+
T Consensus 271 ~aeeaLE~AsraKS~FLAnMSHEIRTPLNgIlG~seLL~~t~L----~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEa 346 (779)
T PRK11091 271 RYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTEL----TAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDR 346 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999987268756539999999999807999----999999999999999999999999999999966
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 0015653101199999999999999997311221000367610-104798999988777655688606798879999999
Q gi|254780701|r 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 (495)
Q Consensus 317 g~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~ 395 (495)
|+++++.+|||+.++++++...+.+.|++||+.+.++.+++.| .+.+|+.||+|||.||++||||||++ |.|.+++..
T Consensus 347 Gkl~l~~~~fdl~~ll~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~-G~V~l~v~~ 425 (779)
T PRK11091 347 RKLQLDNQPVDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GQVTVRVRY 425 (779)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEE
T ss_conf 9967887767599999999999999999749889999789998628638999999999999999773899-977999998
Q ss_pred ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 76985999998789978987854422652315777678-99988805899999999619859999798995298898472
Q gi|254780701|r 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 396 ~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~-~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
.++..+.|+|+|||+|||++++++||++|+|++.+.++ ..+||||||+|||+|+++|||+|+++|++|+||+|+++||.
T Consensus 426 ~~~~~l~f~V~DTGiGI~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl 505 (779)
T PRK11091 426 EDGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHA 505 (779)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 27988999999579999999999870575606678777677887607999999999849979999559987179999976
Q ss_pred HHCCCCCC
Q ss_conf 47074699
Q gi|254780701|r 475 TRVLNFIP 482 (495)
Q Consensus 475 ~~~~~~~p 482 (495)
..+....+
T Consensus 506 ~~~~~~~~ 513 (779)
T PRK11091 506 PAVAEEVE 513 (779)
T ss_pred CCCCCCCC
T ss_conf 65566776
No 6
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=0 Score=512.90 Aligned_cols=248 Identities=31% Similarity=0.438 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999988999997764201389999999998503368789378999999999999999999
Q gi|254780701|r 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 (495)
Q Consensus 225 ~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~L 304 (495)
+.+.++...++.+||++||+||++||+|||+||||||||||+|+|++|+|..+.+ ++++..++++.+..|+++|+.|
T Consensus 688 ITerk~~e~~L~~Ak~~Ae~An~AKS~FLA~MSHEIRTPLn~IiG~~eLL~~~~l---~~~q~~~~l~~~~~Sa~~LL~L 764 (1197)
T PRK09959 688 ITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGL---SKEQRVEAISLAYATGQSLLGL 764 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1289999999999999999998888888874735316568999999999846899---9899999999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCC-CCHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999874220015653101199999999999999997311221000367-610104798999988777655688606
Q gi|254780701|r 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 305 i~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~-~~~~v~~D~~~L~qvl~NLi~NAiK~T 383 (495)
|||+||+||+|+|++++++++||+.+++++++..|.+.|++|++.+.++... ....+.+|+.||+|||.||++||||||
T Consensus 765 InDILD~SKIEaG~l~l~~~~~~l~~li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT 844 (1197)
T PRK09959 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFT 844 (1197)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88889998985388621452017999999999999999996796899955898751352678899999999987537468
Q ss_pred CCCCEEEEEEEEE--CCC--EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 7988799999997--698--599999878997898785442265231577767899988805899999999619859999
Q gi|254780701|r 384 AIGGRVHVTVGWT--SGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 (495)
Q Consensus 384 ~~gG~V~v~~~~~--~~~--~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~ 459 (495)
++ |.|.|++... +++ .+.|+|+|||+|||++++++||+||+|.+. ++.++||||||+|||+|+++|||+|+++
T Consensus 845 ~~-G~V~i~~~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~pF~Q~s~--~r~~~GTGLGLaI~k~LvelMgG~I~v~ 921 (1197)
T PRK09959 845 TE-GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLE 921 (1197)
T ss_pred CC-CEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 79-78999999865179806999999977878898899753678624778--8788984835999999999879928999
Q ss_pred EECCCCEEEEEEECHHHCC
Q ss_conf 7989952988984724707
Q gi|254780701|r 460 SKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 460 S~~G~Gt~f~v~LP~~~~~ 478 (495)
|++|+||+|+|+||.....
T Consensus 922 S~~G~GS~F~~~lpl~~~~ 940 (1197)
T PRK09959 922 SHPGIGTTFTITIPVEISQ 940 (1197)
T ss_pred ECCCCCEEEEEEEECCCCC
T ss_conf 3599944999999756455
No 7
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=100.00 E-value=0 Score=509.74 Aligned_cols=229 Identities=26% Similarity=0.398 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998899999776420138999999999850336878937899999999999999999999999998742200156
Q gi|254780701|r 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 (495)
Q Consensus 242 ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l 321 (495)
.++..+++++|+||||||||||||+|.||+|+|.+... ..+++..+.+++.|.++++||..||+|||.|||+|++..+.
T Consensus 111 l~rLe~mRrDFVANVSHELRTPLTVl~GyLEtl~~~~~-~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~ 189 (339)
T TIGR02966 111 LRRLEQMRRDFVANVSHELRTPLTVLRGYLETLEDGPV-DEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPP 189 (339)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998653431144521114540355689997552367-78808899999999999999999999998887641578884
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 53101199999999999999997311221000367610104798999988777655688606798879999999769859
Q gi|254780701|r 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 (495)
Q Consensus 322 ~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~ 401 (495)
..++||+..+++.+.+..+.+++.|+.++.+++++..+.|.||+..|++++.|||+|||||||+||.|+|+...++ +++
T Consensus 190 ~~~~V~~~~ll~~l~~~A~~ls~~~~h~I~~~~pd~~~~~~G~e~~L~SAf~NLv~NAikYTp~gg~I~v~W~~~~-~ga 268 (339)
T TIGR02966 190 EDEPVDVPALLDHLRDEAEALSQGKQHQITFEIPDAGLDLLGNEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDE-GGA 268 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CEE
T ss_conf 5565687999999999999997118838999823888530144777999999998875300899887999999857-803
Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99998789978987854422652315777678999888058999999996198599997989952988984
Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 (495)
Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~L 472 (495)
.|+|.|||+|||||+++||+|+|||+|.+++|.+|||||||||||++.+.|+++|.|+|++|+||+|++.|
T Consensus 269 ~fsV~DtG~GI~~eHipRLTERFYRVD~~RSR~tGGTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F 339 (339)
T TIGR02966 269 EFSVTDTGIGIAPEHIPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 339 (339)
T ss_pred EEEEEECCCCCCHHHCCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC
T ss_conf 99998779898731377542001230533415788984336899998741487899998853760688759
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=0 Score=486.13 Aligned_cols=242 Identities=30% Similarity=0.430 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998899999776420138999999999850336878937899999----9999999999999999
Q gi|254780701|r 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI----GDIHRSGQHLLNLINE 307 (495)
Q Consensus 232 ~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l----~~i~~s~~~L~~Li~~ 307 (495)
...+.+++++++++.++|++|+|+||||||||||+|.||+|+|.....++. ++...+++ +.+.+..++|.+||||
T Consensus 132 ~~~Lrqe~E~L~e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~L~~LI~D 210 (378)
T PRK09303 132 LFVLRQENETLLEQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPS-EELSPALIEQLQDQARRQLEEIERLITD 210 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999899999999999999997367615319999999999864257974-1667999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998742200156531011999999999999999973112210003676101047989999887776556886067988
Q gi|254780701|r 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 308 lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
+||+||+++|.++++++++|+.+++++++..+.+.+..|++++..+++++.|.|++|+.+|+||+.||++||+||||+||
T Consensus 211 LLd~sr~e~g~l~l~~~~~dL~~lv~evi~~~~~~a~~k~i~l~~dip~dlp~V~aD~~rL~QVl~NLL~NAiKyT~~gG 290 (378)
T PRK09303 211 LLEVGRTRWEALQFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNLLDNAIKYTPEGG 290 (378)
T ss_pred HHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998875388631468876999999999998989983897899976899972876899999999999999998589998
Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 79999999769859999987899789878544226523157776789998880589999999961985999979899529
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~ 467 (495)
.|.|++....++.+.|+|+|||||||++++++||++|||++.+ +..+|+||||+|||+|+++|||+|+|+|+||+||+
T Consensus 291 ~I~I~~~~~~~~~V~isV~DtG~GIp~e~~~rIFe~F~R~~~s--~~~~GtGLGLaIvk~IVe~HgG~I~V~S~~g~GS~ 368 (378)
T PRK09303 291 TITLTMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD--EGTEGYGIGLSVCRRIVEVHYGQIWVDSEPGQGSC 368 (378)
T ss_pred EEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHCCCCEECCCC--CCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEE
T ss_conf 6999999813998999999807888989998756363445689--99883127999999999987997999943998359
Q ss_pred EEEEECHHH
Q ss_conf 889847247
Q gi|254780701|r 468 VIAILPNTR 476 (495)
Q Consensus 468 f~v~LP~~~ 476 (495)
|+|+||..|
T Consensus 369 Ft~tLPv~r 377 (378)
T PRK09303 369 FHFTLPVYR 377 (378)
T ss_pred EEEEEECCC
T ss_conf 999982478
No 9
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=0 Score=447.29 Aligned_cols=226 Identities=28% Similarity=0.513 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999988999997764201389999999998503368789378999999999999999999999999987422001565
Q gi|254780701|r 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 (495)
Q Consensus 243 e~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~ 322 (495)
.+.++.|+.||+++||||||||++|.|++++|..+.. ..++...+++..|.+++.+|.+||+||||+||+|+|.++++
T Consensus 658 aE~ErLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~--~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l~l~ 735 (895)
T PRK10490 658 SEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLA--SEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLK 735 (895)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7777899999986034357869999999999854777--88288999999999999999999999999987636997664
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 31011999999999999999973112210003676101047989999887776556886067988799999997698599
Q gi|254780701|r 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 (495)
Q Consensus 323 ~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~ 402 (495)
.+++++.+++..++..+.+....+.+.+ +++++.|.+++|+.+++|||.||++||+||||+||.|.|+++. .++.+.
T Consensus 736 ~~~~~l~evv~~al~~~~~~~~~~~i~v--~~~~~~~~v~~D~~lleQVL~NLl~NAiKytp~~~~I~v~a~~-~~~~v~ 812 (895)
T PRK10490 736 KEWLTLEEVVGSALQMLEPGLSQHPINL--SLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHV-EGENLQ 812 (895)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEE--EECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-ECCEEE
T ss_conf 6420699999999999986612696799--9569870698789999999999999999858999709999999-799999
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 9998789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
|+|+|+|||||++++++||++|||++.+ +..+|+||||+|||.|+++|||+|+++|.+|+||+|+|+||..
T Consensus 813 i~V~D~G~GIp~~~~~~IFe~F~R~~~~--~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LPl~ 883 (895)
T PRK10490 813 LDVWDNGPGIPPGQEQLIFDKFARGNKE--SAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQE 883 (895)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 9999808987979999755687128999--9999744789999999998799899995699806999983299
No 10
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=0 Score=443.82 Aligned_cols=229 Identities=29% Similarity=0.426 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988999997764201389999999998503368789378999999999999999999999999987422001565310
Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 (495)
Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~ 325 (495)
.++|++|+||+|||||||||+|.||+|+|.+... +++..+++++.|.++++||..||||+|++||+|++......++
T Consensus 201 E~~R~dFvAnvSHELRTPLT~I~G~~ElL~~~~~---~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~ 277 (431)
T PRK11006 201 EGARRNFFANVSHELRTPLTVLQGYLEMMEEQPL---EGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEK 277 (431)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999986208661779999999999857999---8099999999999999999999999999976425875213653
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEE
Q ss_conf 11999999999999999973112210003676101047989999887776556886067988799999997698599999
Q gi|254780701|r 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 (495)
Q Consensus 326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V 405 (495)
+|+..+++.+........+ ++..+..+++++ ..+.+|+.+|+||+.||++||+||||+||.|.|++... ++.+.|+|
T Consensus 278 vd~~~ll~~l~~~~~~l~~-~~~~i~~~~~~~-~~v~~D~~~L~qvl~NLi~NAikytp~g~~I~I~~~~~-~~~~~i~V 354 (431)
T PRK11006 278 VDVPMMLRVLEREAQTLSQ-KKHTITFEVDDS-LKVLGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV-PHGAEFSV 354 (431)
T ss_pred CCHHHHHHHHHHHHHHHHH-HCCCCCCCCCCC-CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEEEEE
T ss_conf 1399999999999999986-256665568998-27997899999999999998997479997799999994-99899999
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCC
Q ss_conf 878997898785442265231577767899988805899999999619859999798995298898472470746
Q gi|254780701|r 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 (495)
Q Consensus 406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~ 480 (495)
+|+|+|||++++++||++|||+++++++..+||||||+|||+|+++|||+|+++|++|+||+|+++||..++...
T Consensus 355 ~D~G~GI~~e~~~riFerFyR~d~~rs~~~gGtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~~~v~~~ 429 (431)
T PRK11006 355 EDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPERLIAKN 429 (431)
T ss_pred EECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCHHHCCC
T ss_conf 983878598999986268882888887999955489999999999859989999559985599998486563667
No 11
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=0 Score=424.23 Aligned_cols=242 Identities=21% Similarity=0.322 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|+.......+.+.++.|+....+++|.|++||||||||++|.|++|++.... ..++++++++..+.++.+||.+||+
T Consensus 240 El~~La~~fN~M~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~---~~~~~~~~~l~~~~~e~~rl~~lv~ 316 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS---RSQKELEDVLYSNLEELTRMAKMVS 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999999999999999988987189999999999985389---9869999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655688606798
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
++|++||+|.+...++.+++|+.+++.++++.+++.++.+++++.+.. ++..+.+|+.+|+|++.|||+||+||||+|
T Consensus 317 ~lL~lar~e~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NAikys~~g 394 (482)
T PRK09835 317 DMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNALRYTPEG 394 (482)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987743588766673456999999999999999986892899827--870899879999999999999999848999
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999976985999998789978987854422652315777678999888058999999996198599997989952
Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
|.|.|++.. .++.+.|+|+|+|+|||+|++++||+||||+|.++++..+|+||||+|||+|+++|||+|.++|+ ++||
T Consensus 395 ~~i~i~~~~-~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt 472 (482)
T PRK09835 395 EAIVVRCQT-VDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGT 472 (482)
T ss_pred CEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCE
T ss_conf 869999998-29989999996587889899987667975189888899994648999999999982998999963-9918
Q ss_pred EEEEEECHH
Q ss_conf 988984724
Q gi|254780701|r 467 EVIAILPNT 475 (495)
Q Consensus 467 ~f~v~LP~~ 475 (495)
+|+++||+.
T Consensus 473 ~f~i~lPr~ 481 (482)
T PRK09835 473 RFVISLPRL 481 (482)
T ss_pred EEEEEEECC
T ss_conf 999993078
No 12
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=0 Score=425.45 Aligned_cols=246 Identities=23% Similarity=0.380 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|+.+.....+++.++.|+..+.|.+|+|++||||||||++|.|++|.|.+... +...+++..+.++.++|.+||+
T Consensus 219 Eig~La~~fN~Ma~~Le~~~~~rr~f~a~iSHELRTPLt~i~g~le~l~d~~~-----~~~~e~l~~i~~e~~rl~~Lv~ 293 (467)
T PRK10549 219 ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-----KFTPESVASLQAEVGTLTKLVD 293 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999998888751589999999999871655-----4579999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655688606798
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
|++++|+.|.|.+.++.+++|+.+++++++..+.+.+..+++.+..++++. ..+++|+.+|+|++.||++||+|||++|
T Consensus 294 dLl~ls~~~~~~~~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~~-~~v~~D~~~L~qvl~NLl~NAikyt~~~ 372 (467)
T PRK10549 294 DLHQLSLSDEGALAYQKTPVDLVPLLEVAGGAFRERFASRGLTLQFSLPDS-ATVFGDPDRLMQLFNNLLENSLRYTDSG 372 (467)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999998754567544673333899999999999999984595899975988-4699779999999999999999848999
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999976985999998789978987854422652315777678999888058999999996198599997989952
Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
|.|.|++.. .++.+.|+|+|+|||||+|++++||+||||++.++++..+|+||||+|||+|+++|||+|+++|.+|+||
T Consensus 373 g~I~I~~~~-~~~~v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~ 451 (467)
T PRK10549 373 GSLHISAEQ-HDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGV 451 (467)
T ss_pred CEEEEEEEE-ECCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 879999999-7999999999818887989999866898738888889999612899999999998399899996799857
Q ss_pred EEEEEECHHHCCC
Q ss_conf 9889847247074
Q gi|254780701|r 467 EVIAILPNTRVLN 479 (495)
Q Consensus 467 ~f~v~LP~~~~~~ 479 (495)
+|+++||..+-.+
T Consensus 452 ~f~i~LPl~~~~~ 464 (467)
T PRK10549 452 SITVELPLERDLQ 464 (467)
T ss_pred EEEEEEECCCCCC
T ss_conf 9999952799988
No 13
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=100.00 E-value=0 Score=421.12 Aligned_cols=239 Identities=26% Similarity=0.439 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999988999997764201389999999998503368789378999999999999999999999
Q gi|254780701|r 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 (495)
Q Consensus 228 l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~ 307 (495)
+.+.....++++++.|.. ....+|++++||||||||++|.|++|+|+++. ++++.+++++.|.++++||.+||++
T Consensus 236 i~~La~a~n~M~~~Le~~-~~~e~fva~vSHELRTPLt~I~g~~ElL~~~~----~~e~~~~~l~~I~~e~~RL~~LV~~ 310 (475)
T PRK11100 236 LRDLAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDP----PPEDRQRFTGNILAQSARLQQLIDR 310 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999979-99999998540865117999999999973899----9899999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998742200156531011999999999999999973112210003676101047989999887776556886067988
Q gi|254780701|r 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 308 lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
+|++||+|++....+.+++|+.+++++++..+.+.+.++++.+..+.+ ...+.+|+.+|+|++.||++||+||||+||
T Consensus 311 LL~larle~~~~~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~--~~~v~~D~~~L~qvl~NLl~NAikys~~~g 388 (475)
T PRK11100 311 LLELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD--DAAVLGDPFLLRQALGNLLDNAIDFTPEGG 388 (475)
T ss_pred HHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCEEEEEECC--CCEEEECHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999987515887675548759999999999999999868929999578--766970899999999999999997389997
Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 79999999769859999987899789878544226523157776789998880589999999961985999979899529
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~ 467 (495)
.|.|+++. .++.+.|+|+|+|+|||++++++||+|||+.+.+.+ ..+|+||||+|||+|+++|||+|+++|.+|+||+
T Consensus 389 ~I~I~~~~-~~~~~~i~V~D~G~GIp~e~l~~IFerFys~~r~~~-~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~ 466 (475)
T PRK11100 389 TITLSAER-DGEQVALSVEDSGPGIPDYALPRIFERFYSLPRPAN-GRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVL 466 (475)
T ss_pred EEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
T ss_conf 79999999-699999999984888788999886167803777999-9886307999999999985998999966998079
Q ss_pred EEEEECHH
Q ss_conf 88984724
Q gi|254780701|r 468 VIAILPNT 475 (495)
Q Consensus 468 f~v~LP~~ 475 (495)
|+++||..
T Consensus 467 f~i~LP~~ 474 (475)
T PRK11100 467 ATLTLPRH 474 (475)
T ss_pred EEEECCCC
T ss_conf 99993899
No 14
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00 E-value=0 Score=417.80 Aligned_cols=219 Identities=29% Similarity=0.458 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
+..+|+|++||||||||++|.||+|+|.++. +++..+++++.|.++++||.++|+++|++||.+.+ +.++++
T Consensus 387 alGe~~A~vaHElRnPLt~I~g~~elL~~~~----~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~----~~~~v~ 458 (607)
T PRK11360 387 ALGELMAGVAHEIRNPLTAIRGYVQILRQQT----SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHS----QWQQVS 458 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEEC
T ss_conf 9999999989987154999999999986689----98799999999999999999999999985277888----884786
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEE
Q ss_conf 99999999999999997311221000367610104798999988777655688606798879999999769859999987
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~D 407 (495)
+.++++++...+.+.+..+++.+..+++++.|.+++|+.+|+||+.||++||+||+++||.|.|++....++.+.|+|+|
T Consensus 459 l~~l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V~D 538 (607)
T PRK11360 459 LNALVEEVLVLVQTAGVQARVDFITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIED 538 (607)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEE
T ss_conf 99999999999999888679689998189887699888999999999999962862899679999999369879999998
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCC
Q ss_conf 8997898785442265231577767899988805899999999619859999798995298898472470746
Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 (495)
Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~ 480 (495)
+|+|||+|++++||+|||+ ++.+||||||+|||+|++.|||+|+++|++|+||+|+++||.....+.
T Consensus 539 ~G~GI~~e~~~~IFepF~t------tk~~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~~~~~~ 605 (607)
T PRK11360 539 NGCGIDLELLKKIFDPFFT------TKASGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPINPQGNQ 605 (607)
T ss_pred CCCCCCHHHHHHHCCCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 6768698999645589754------899981337999999999889989999669998699999806898889
No 15
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=100.00 E-value=1.4e-43 Score=392.48 Aligned_cols=233 Identities=21% Similarity=0.336 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|+.......+++.++.+++...+.+|+|++||||||||++|.|++|++.++.. ++ .+.+.+..++|..+++
T Consensus 121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-----~~----~~~~~~~i~rl~~li~ 191 (355)
T PRK10755 121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH-----ID----VAPLIARLDQMMHSVS 191 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----CC----HHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999997577740389999999999737575-----31----9999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998742200156531011-9999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAIS-LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~-L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
++|+++|.+.+....+.++++ +.+++..+...+.+.+..++..+.+..++....+++|+.+|+|++.||++||+||||+
T Consensus 192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~ 271 (355)
T PRK10755 192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE 271 (355)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999858886434544213259999999999999999975995999658877189968999999999999989974899
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798-99
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-RE 464 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~-G~ 464 (495)
||.|.|++. . ++...|+|+|+|||||++++++||+||||+++ +.+|+||||+|||+|+++|||+|+++|+| |.
T Consensus 272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg 345 (355)
T PRK10755 272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS 345 (355)
T ss_pred CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 976999999-7-79889999987999897999885588613899----99987589999999999919989999879898
Q ss_pred CEEEEEEECH
Q ss_conf 5298898472
Q gi|254780701|r 465 GVEVIAILPN 474 (495)
Q Consensus 465 Gt~f~v~LP~ 474 (495)
||+|+|+||.
T Consensus 346 Gt~~~v~LPk 355 (355)
T PRK10755 346 GTRAWVWLKK 355 (355)
T ss_pred EEEEEEEECC
T ss_conf 7899999479
No 16
>PRK10337 sensor protein QseC; Provisional
Probab=100.00 E-value=4.6e-44 Score=396.65 Aligned_cols=235 Identities=23% Similarity=0.331 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|+.......++..++.|++-..+.+|.+++||||||||++|.+++|++.... .+++.+++.+..|.++.++|.+|++
T Consensus 212 El~~L~~a~N~ml~rl~~~~~~~r~F~adaAHELRTPLt~i~~~~e~~~~~~---~~~~~~~~~l~~i~~~~~rl~~lv~ 288 (446)
T PRK10337 212 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSD---DDPQARKKALLQLHSGIDRATRLVD 288 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999788875168999999999984279---9989999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655688606798
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
+||.++|+|++....+.+++|+.+++++++..+.+.|..+++.+..+.++..+.+.+|+.+|+|++.|||+||+||||+|
T Consensus 289 ~LL~Lar~d~~~~~~~~~~v~l~~l~~~~v~~~~~~a~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NAikytp~g 368 (446)
T PRK10337 289 QLLTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNAVRYSPQG 368 (446)
T ss_pred HHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998775446565678175299999999999999999759779996288770671689999999999999999748999
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999976985999998789978987854422652315777678999888058999999996198599997989952
Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
|.|.|++.. . .++|+|+|||||+|++++|||||||.++ +..+|+||||+|||+|+++|||+|+++|.|+.|+
T Consensus 369 ~~I~v~~~~--~---~l~V~D~G~GIp~e~~~~iFeRFyR~~~---~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~ 440 (446)
T PRK10337 369 SVVDVTLNA--R---NFTVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGF 440 (446)
T ss_pred CEEEEEEEC--C---EEEEEECCCCCCHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEE
T ss_conf 769999980--7---7999976999999999874279706999---9999826749999999998199899997898927
Q ss_pred EEEEEE
Q ss_conf 988984
Q gi|254780701|r 467 EVIAIL 472 (495)
Q Consensus 467 ~f~v~L 472 (495)
+|+|++
T Consensus 441 ~~~vt~ 446 (446)
T PRK10337 441 EAKVSW 446 (446)
T ss_pred EEEEEC
T ss_conf 999969
No 17
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=401.59 Aligned_cols=239 Identities=22% Similarity=0.333 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
|+.+.....+.+.++.|+....+.+|++++||||||||+.|.++++++..... +. +.++.|..++++|.+||+
T Consensus 221 Ei~~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~~----~~---~~l~~i~~e~~rl~~li~ 293 (461)
T PRK09470 221 EFRAAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQG----ES---KELERIETEAQRLDSMIN 293 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----CH---HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999986455532789999999998640447----85---999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655688606798
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
++|++||.|.+. .+..+++++.++++++++.+...++++++.+.+...++...+++|+.+|+|++.||++||+|||+.
T Consensus 294 ~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~- 371 (461)
T PRK09470 294 DLLVLSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT- 371 (461)
T ss_pred HHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999997620546-555651539999999999999999975976999727875489978999999999999999974899-
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999976985999998789978987854422652315777678999888058999999996198599997989952
Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
.|.|++.. .++.+.|+|+|+|||||++++++||+||||++.++++..+|+||||+|||+|+++|||+|+++|.++.||
T Consensus 372 -~i~v~~~~-~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~ 449 (461)
T PRK09470 372 -KIEVGFSV-DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGL 449 (461)
T ss_pred -CEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf -58999999-9999999999779998999998762797228988889999713889999999998299899997799856
Q ss_pred EEEEEECHHH
Q ss_conf 9889847247
Q gi|254780701|r 467 EVIAILPNTR 476 (495)
Q Consensus 467 ~f~v~LP~~~ 476 (495)
+|+++||...
T Consensus 450 ~~~i~LPl~~ 459 (461)
T PRK09470 450 RLTIWLPLYK 459 (461)
T ss_pred EEEEEEECCC
T ss_conf 9999965889
No 18
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-43 Score=387.62 Aligned_cols=236 Identities=31% Similarity=0.518 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988999997764201389999999998503368789378999999999999999999999999987
Q gi|254780701|r 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 (495)
Q Consensus 234 ~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr 313 (495)
..++++-++| ..+.+|-||+++||||||||++|.|.++.|.... ...+++...+.+..|.+++++|.++|++|||++|
T Consensus 646 ~~~~a~l~~e-~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~-~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTR 723 (890)
T COG2205 646 EAEQARLAAE-RERLRSALLASISHDLRTPLTAIMGAAETLLLDG-EALSPEDRAELLSSIREESERLTRLVTNLLDMTR 723 (890)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999-9999999998741024672898861488864234-0159376999999999999999999998776777
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 42200156531011999999999999999973112210003676101047989999887776556886067988799999
Q gi|254780701|r 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 314 leag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
+++|.++++.++..+.+++.+.......... +..+.++++++++.+++|+.+++|||.||+.||+||+|++.+|.|.+
T Consensus 724 i~sG~~~l~~~~~~veEvVg~Al~r~~k~~~--~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~ 801 (890)
T COG2205 724 LQSGGVNLKLDWVLVEEVVGEALQRLRKRFT--GHKIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINA 801 (890)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7137864144520399999999998663047--83589955888716764788999999999987874289997699999
Q ss_pred EEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 99769859999987899789878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 394 ~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
.. +.+.+.|+|+|.|||||++++++||++||++++... ..|+||||+|||.|++.|||+|++++.+++|++|+++||
T Consensus 802 ~~-~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP 878 (890)
T COG2205 802 GV-ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLP 878 (890)
T ss_pred EE-ECCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 98-245699999718999885678876465414888778--887662299999999974886898776999358999940
Q ss_pred HHH
Q ss_conf 247
Q gi|254780701|r 474 NTR 476 (495)
Q Consensus 474 ~~~ 476 (495)
...
T Consensus 879 ~~~ 881 (890)
T COG2205 879 VEE 881 (890)
T ss_pred CCC
T ss_conf 688
No 19
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=5.5e-44 Score=395.96 Aligned_cols=214 Identities=26% Similarity=0.448 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
+-.++.|.+||||||||++|.||+++|.++.. .+++.+++++.|.++++||.++|+++|+++|.+ .++.+++|
T Consensus 237 aLG~LAAgVAHEIRNPLtsI~G~AqlL~~~~~---~~~e~~e~~~iI~~E~~RL~~iI~~LL~faRp~----~~~~~~vd 309 (455)
T PRK10364 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAP---AGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVD 309 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCEEC
T ss_conf 99999999899885649999999999867699---985799999999999999999999999872899----89884884
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEE
Q ss_conf 99999999999999997311221000367610104798999988777655688606798879999999769859999987
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~D 407 (495)
+.++++++...+.+.+..+++.+..+.+++.|.+++|+.+|+||+.||+.||++++++||.|.|++.. .++.+.|+|+|
T Consensus 310 L~~li~~~l~l~~~~a~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A~~~gg~I~I~~~~-~~~~V~I~V~D 388 (455)
T PRK10364 310 LNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASE-SGAGVKISVTD 388 (455)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEEEE
T ss_conf 99999999999986886489099997388887598889999999999999999975899779999998-59989999997
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 89978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
||+|||+|++++||+||| +++.+||||||+|||+|++.|||+|+++|++|+||+|+++||..
T Consensus 389 nG~GIp~E~l~rIFePFf------TTK~~GTGLGLaIv~~IVe~HgG~I~v~S~~G~GT~FtI~LPl~ 450 (455)
T PRK10364 389 SGKGIAADQLEAIFTPYF------TTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVN 450 (455)
T ss_pred CCCCCCHHHHHHHCCCCC------CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 699979789878658976------48989702889999999998899799995599987999998278
No 20
>TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00 E-value=2.8e-45 Score=406.91 Aligned_cols=253 Identities=27% Similarity=0.404 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99998889999999999999999999999999998899999776420138999999999850336878937899999999
Q gi|254780701|r 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 (495)
Q Consensus 215 l~~~~e~~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i 294 (495)
|..|.+...+-.|++........+..|.|++-+-.++|=|+++||||||||..+|-+|+.... +-+.++|++.++.-
T Consensus 227 L~~RL~~~~~P~EL~~l~~~FNaML~RLEd~f~rLs~FSaDlAHElRTPltNL~~~tQVaLS~---~R~~~eY~e~l~sn 303 (483)
T TIGR01386 227 LSQRLDESRLPAELRELAQSFNAMLDRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSR---PRSGEEYREVLESN 303 (483)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHEEECC---CCCHHHHHHHHHHH
T ss_conf 677898124786689999999999888999999997317145666401254456650020056---88988999999861
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCC--CCCEECCCCCCHHCCCCHHHHHHH
Q ss_conf 999999999999999998742200156531011999999-99999999997311--221000367610104798999988
Q gi|254780701|r 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR-ECIIMLQLRAQEKN--IEIFQKIDPSLSSVWADEKGMRQV 371 (495)
Q Consensus 295 ~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~-~~~~~~~~~A~~~~--~~l~~~~~~~~~~v~~D~~~L~qv 371 (495)
.++-+||.+||+|+|=|+|.|.|++.++.+.+||.+-++ .+.+.|++.|+.+| +.+.++..| ..+.||+.+++++
T Consensus 304 lEEl~RL~rMv~DMLFLAraD~~~~~~~~~~ldL~ae~~l~~~~~fE~lAee~~Piv~l~v~G~P--~~~~gD~~lfrRA 381 (483)
T TIGR01386 304 LEELERLSRMVEDMLFLARADNGRLALEREELDLAAELALKVAEYFEPLAEERGPIVSLRVEGEP--AEVRGDALLFRRA 381 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC--CEEECCHHHHHHH
T ss_conf 89999999999899989985234567778751278888788887742027678866899983242--0560247888999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHH
Q ss_conf 77765568860679887999999976985999998789978987854422652315777678-99988805899999999
Q gi|254780701|r 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMA 450 (495)
Q Consensus 372 l~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~-~~~GtGLGLaIvk~lve 450 (495)
+.|||+|||||||+||.|.|++++ ..+.+.|.|+|+|+|||||++++|||+|||+|.+++. ...||||||||||.|++
T Consensus 382 ~sNLLsNA~rhtp~g~~I~v~~~~-~~d~~~~~v~N~G~~Ip~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~ 460 (483)
T TIGR01386 382 LSNLLSNALRHTPAGSTIDVRVER-RADEVRVSVENTGDGIPPEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIME 460 (483)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999998608998858999961-4775689983587999852356555300267633327664567604899999998
Q ss_pred HCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 61985999979899529889847
Q gi|254780701|r 451 NHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 451 ~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
.|||++.++|.+++=|+|++.||
T Consensus 461 ~HGG~~~aeS~~~~~t~F~l~fp 483 (483)
T TIGR01386 461 AHGGRAEAESEADGKTRFKLRFP 483 (483)
T ss_pred HCCCEEEEEECCCCEEEEEEECC
T ss_conf 23986899864892489876339
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=1e-43 Score=393.61 Aligned_cols=237 Identities=23% Similarity=0.275 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999988999997764201389999999998503368789378999999999999999999999
Q gi|254780701|r 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 (495)
Q Consensus 228 l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~ 307 (495)
+.......+++-++.++....+.+|++++||||||||+.|.+.++++.+. ..++ + +.+.+..++|..|+++
T Consensus 191 i~~La~~FN~Ma~~l~~~~~~~r~f~a~vSHELRTPLt~i~~~lell~~~-----~~~e-~---~~l~~~i~~l~~lv~~ 261 (433)
T PRK10604 191 FERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL-----SAAE-S---QALNRDIGQLEALIEE 261 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCC-----CHHH-H---HHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998740244316899999999970499-----8578-9---9999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998742200156531011999999999999999973112210003676101047989999887776556886067988
Q gi|254780701|r 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 308 lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
+|++||+|.+..+++.+++|+.+++.+++..+++.+..+++.+... .....+.+|+.+++|++.||++||+||+ +|
T Consensus 262 lL~larl~~~~~~l~~~~~dl~~~i~~~~~~~~~~~~~~~i~l~~~--~~~~~~~~D~~~l~~~l~NLl~NA~kys--~~ 337 (433)
T PRK10604 262 LLTYARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLKTP--HQGDYGALDMRLMERVLDNLLNNALRYS--HS 337 (433)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC--CCCCEEEECHHHHHHHHHHHHHHHHHCC--CC
T ss_conf 9999763689787877023699999999999997655996799717--9886698789999999999999998718--99
Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 79999999769859999987899789878544226523157776789998880589999999961985999979899529
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~ 467 (495)
.|.|++.. .++.+.|+|+|+|||||+|++++||+||||+|+++++..+|+||||+|||+|++.|||+|+++|.+|+||+
T Consensus 338 ~v~v~~~~-~~~~~~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~ 416 (433)
T PRK10604 338 TVETSLLL-DGDQATLIVEDDGPGIAPEERERIFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGAR 416 (433)
T ss_pred CEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
T ss_conf 78999999-99999999997787889899998657945288888999996138899999999981998999966998479
Q ss_pred EEEEECHHHCC
Q ss_conf 88984724707
Q gi|254780701|r 468 VIAILPNTRVL 478 (495)
Q Consensus 468 f~v~LP~~~~~ 478 (495)
|+++||...-.
T Consensus 417 f~i~LP~~~~~ 427 (433)
T PRK10604 417 FSFSWPVWHNI 427 (433)
T ss_pred EEEEECCCCCC
T ss_conf 99997799999
No 22
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=4.3e-44 Score=396.89 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9998899999776420138999999999850336878-937899999999999999999999999998742200156531
Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL-NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 (495)
Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~-~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~ 324 (495)
..++++|+++||||||||||+|.||+++|......+. +.+..+++++.|.++++++..|++++|++||.+ +++.+
T Consensus 158 lealg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~----~l~~~ 233 (538)
T PRK13557 158 MEALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQ----KLDGR 233 (538)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCE
T ss_conf 99999999887887626999999999999864016888999999999999999999999999999975827----68771
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE--------
Q ss_conf 011999999999999999973112210003676101047989999887776556886067988799999997--------
Q gi|254780701|r 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396 (495)
Q Consensus 325 ~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~-------- 396 (495)
++++.++++++...+. .+..+++.+..++.++.|.+.+|+.+|+|||.||++||+||+++||.|.|+++..
T Consensus 234 ~~~l~~lv~~~~~l~~-~~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~~~~ 312 (538)
T PRK13557 234 VVNLNGLVSGMGEMAE-RTLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEHDLA 312 (538)
T ss_pred EECHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCC
T ss_conf 7729999999999999-985299199998079887087558999999999898799865789759999987641542100
Q ss_pred ------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf ------69859999987899789878544226523157776789998880589999999961985999979899529889
Q gi|254780701|r 397 ------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 (495)
Q Consensus 397 ------~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v 470 (495)
++..+.|+|+|||+|||+|.+++||+||++. +...+||||||+|||+|+++|||+|+++|++|+||+|+|
T Consensus 313 ~~~~~~~g~~v~i~V~DtG~GI~~e~~~rIFepFftt----k~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v 388 (538)
T PRK13557 313 MYHQLPPGRYVSIAVTDTGSGMPPEILARVMEPFFTT----KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL 388 (538)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEE----CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf 1245788878999999868988989999772501042----245787772499999999987995999932898779999
Q ss_pred EECHHHCCCC
Q ss_conf 8472470746
Q gi|254780701|r 471 ILPNTRVLNF 480 (495)
Q Consensus 471 ~LP~~~~~~~ 480 (495)
+||.......
T Consensus 389 ~lP~~~~~~~ 398 (538)
T PRK13557 389 YFPASEQAEN 398 (538)
T ss_pred EEECCCCCCC
T ss_conf 9867876667
No 23
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=4.3e-41 Score=371.17 Aligned_cols=240 Identities=19% Similarity=0.224 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999889999977642013899999999985033687893789999999999999999999
Q gi|254780701|r 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 (495)
Q Consensus 226 ~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li 305 (495)
.|+.......++...+.++......+|+|++||||||||++|.|++|.++.+.. +.+ +....+.++.+||.+++
T Consensus 243 ~Ei~~La~~fN~ml~rl~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~~---~~~---~~~~~~le~i~Rl~~li 316 (484)
T PRK10815 243 RELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEKM---SVS---DAEPVMLEQISRISQQI 316 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCC---CHH---HHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999854436434569999999999746998---878---99999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999987422001565310119999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 306 ~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
+++|++++++++...+..+.+++.+++++++..+.+.++.|++.+.++++|+. .+.+|+..|.|++.||++||+|||++
T Consensus 317 ~~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~ 395 (484)
T PRK10815 317 GYYLHRASMRGEGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLE 395 (484)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999987038986302555669999999999999999964977999648760-79557899999999999999972888
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798995
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~G 465 (495)
+ |.|+++. .++.+.|.|+|+|||||++++++||++|||+|.++ +|+||||||||+|++.|||+|+++|.|++|
T Consensus 396 ~--v~I~~~~-~~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~r----~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG 468 (484)
T PRK10815 396 F--VEISARQ-TDEHLHIVVEDDGPGIPESKRELIFDRGQRVDTLR----PGQGVGLAVAREITEQYEGKIVASESPLGG 468 (484)
T ss_pred C--EEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 6--7999999-69999999997399999899986246887799999----985767999999999889989999569992
Q ss_pred EEEEEEECHHHCCC
Q ss_conf 29889847247074
Q gi|254780701|r 466 VEVIAILPNTRVLN 479 (495)
Q Consensus 466 t~f~v~LP~~~~~~ 479 (495)
++|+|+||.....+
T Consensus 469 ~~f~I~F~~~~~~p 482 (484)
T PRK10815 469 ARMEVIFGRQHSTP 482 (484)
T ss_pred EEEEEEECCCCCCC
T ss_conf 48999973877899
No 24
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=366.90 Aligned_cols=229 Identities=24% Similarity=0.394 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999889999977642013899999999985033687893789999999999999999999
Q gi|254780701|r 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 (495)
Q Consensus 226 ~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li 305 (495)
.|+.+.....+++.++.++....|++|+|++||||||||+.|.+++|+|..+ ++ ...+.|.+..++|.+++
T Consensus 208 ~Ev~~l~~aFN~M~~~l~~~~~~r~~~la~vSHeLRTPLT~irl~~e~l~~~------~~---~~~~~i~~~i~~m~~li 278 (437)
T PRK09467 208 SEVRSVTRAFNQMSAGIKQLEDDRALLMAGVSHDLRTPLTRIRLATEMMSEE------DG---YLAESINKDIEECNAII 278 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC------HH---HHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999753444327899999998746753------18---99999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999987422001565310119999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 306 ~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
+++||++|.+. +...+++|+.+++++++.... .++..+..+.++.++.+.+|+.+|+|++.||++||+||+
T Consensus 279 ~~~L~~~r~~~---~~~~~~~dl~~l~~~~~~~~~----~~~~~i~~~~~~~~~~v~~d~~~l~r~l~NLi~NA~ky~-- 349 (437)
T PRK09467 279 EQFIDYLRTDQ---EMPMEMADLNALLGEVIAAES----GYEREIETALYPGPIEVPMNPIAIKRALANLVVNAARYG-- 349 (437)
T ss_pred HHHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHH----CCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCC--
T ss_conf 99999986215---566751159999999999875----549838996288764898579999999999999887607--
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798995
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~G 465 (495)
+|.|.|++.. +++.+.|+|.|+|||||+|++++||+||||+|.+++ .+|+||||+|||+|++.|||+|+++|.||.|
T Consensus 350 ~~~i~V~~~~-~~~~~~i~V~D~GpGI~~e~l~~if~pF~R~d~sR~--~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gG 426 (437)
T PRK09467 350 NGWIKVSSGT-EGNRAWFQVEDNGPGIPEEQIKHLFQPFTRGDSARG--SSGTGLGLAIVKRIVDQHQGKVELGNREEGG 426 (437)
T ss_pred CCEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC--CCCEEHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9839999998-689999999975999998999876168521888999--9977288999999999869989999779994
Q ss_pred EEEEEEECHH
Q ss_conf 2988984724
Q gi|254780701|r 466 VEVIAILPNT 475 (495)
Q Consensus 466 t~f~v~LP~~ 475 (495)
++|+++||..
T Consensus 427 l~~~i~lPl~ 436 (437)
T PRK09467 427 LSARAWLPLP 436 (437)
T ss_pred EEEEEEECCC
T ss_conf 5999997157
No 25
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.9e-40 Score=364.09 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
+-.++.+.++||+++||++|.||+|++..... .++..+++++.|.++++|...|++++|+|||-+ +.+++++|
T Consensus 452 AiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~---~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~----~~~~~~vd 524 (831)
T PRK13837 452 AVGTLASGIAHNFNNILGAILGYAEMALNKLR---RHSRARRHIDEIISSGDRARLIIDQILTFGRKG----ERRTKPFS 524 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCEEC
T ss_conf 99999989999870089999999999862069---984778999999999999999999999985899----99771774
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-----------
Q ss_conf 999999999999999973112210003676101047989999887776556886067988799999997-----------
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----------- 396 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~----------- 396 (495)
+.++++++...+... -.+++.+.++.+++++.|.+|+.+|+||+.||+.||...+++||.|+|++...
T Consensus 525 l~~lv~e~~~llr~~-l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~~ 603 (831)
T PRK13837 525 LSELVTEIAPLLRVS-LPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAHG 603 (831)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCCC
T ss_conf 999999999999987-5898699997189885388879999999999999999976799869999855533632321157
Q ss_pred ---CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf ---69859999987899789878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 397 ---~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
+++.+.++|+|||+|||+|.+++|||||| +++.+||||||++|+.|++.|||.|.|+|+||+||+|+|.||
T Consensus 604 ~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFF------TTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP 677 (831)
T PRK13837 604 TAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFF------TTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLP 677 (831)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEE
T ss_conf 78998989999986799989899966048986------788998874699999999986986999726999718999831
Q ss_pred HHHCCCCCCCC
Q ss_conf 24707469987
Q gi|254780701|r 474 NTRVLNFIPED 484 (495)
Q Consensus 474 ~~~~~~~~p~~ 484 (495)
+....+..|+.
T Consensus 678 ~~~~~~~~~~~ 688 (831)
T PRK13837 678 PSSKVPVAPDA 688 (831)
T ss_pred CCCCCCCCCCC
T ss_conf 79887778776
No 26
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-42 Score=384.63 Aligned_cols=232 Identities=28% Similarity=0.444 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999889999977642013899999999985033687893789999999999999999999999999874220015653
Q gi|254780701|r 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 (495)
Q Consensus 244 ~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~ 323 (495)
...+++.+|.||+||||||||+++.+|+|.|.++... +.+....++..-.++++||.+||||||.+||++..+..++.
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~--d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~ 297 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWE--DKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNK 297 (459)
T ss_pred HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8899999998861403147367899999997468744--71232689987478899999999999877257632566657
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC-CEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 10119999999999999999731122-10003676101047989999887776556886067988799999997698599
Q gi|254780701|r 324 SAISLIDIVRECIIMLQLRAQEKNIE-IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 (495)
Q Consensus 324 ~~v~L~~li~~~~~~~~~~A~~~~~~-l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~ 402 (495)
+-+++...+..+...++....++... +.-+++....++..|+..+.||+.|+++||+||+|.||+|++++.. .+..+.
T Consensus 298 e~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~-~~~~v~ 376 (459)
T COG5002 298 EWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ-RETWVE 376 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-ECCEEE
T ss_conf 8887488999999999998756778899960888864899670689999999987775248999739999963-075899
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf 9998789978987854422652315777678999888058999999996198599997989952988984724707
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~ 478 (495)
|+|+|+|.|||.+++++||++|||+|.+++|..+||||||+|+|.|++.|||.||++|+.|+||+|+++||.+...
T Consensus 377 iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~~ 452 (459)
T COG5002 377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA 452 (459)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 9974688899840689999988522366540378776129999999997098577760458861799995466766
No 27
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00 E-value=7.3e-38 Score=343.50 Aligned_cols=209 Identities=26% Similarity=0.432 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
++.+|++++||||||||++|.|++|+|.... .++...++++.|.+++++|.+++|++|+++|... ..+.+
T Consensus 129 ~~~e~~~~iaHelrnPL~~I~g~~~ll~~~~----~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~ 198 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL----PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITES 198 (348)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCC
T ss_conf 9999998401874785799999999997417----9989999999999999999999999864412688------77547
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEECCC-------
Q ss_conf 9999999999999999731122100036761010479899998877765568860-67988799999997698-------
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGR------- 399 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~-T~~gG~V~v~~~~~~~~------- 399 (495)
+..+++.+...+... ..+++.+..+.+|..|.+++|+.+|+||+.||++||+|| ++.||.|.++++...+.
T Consensus 199 l~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~ 277 (348)
T PRK11073 199 IHKVAERVVQLVSLE-LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERY 277 (348)
T ss_pred HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 999999999999985-6578099996078887264468788999999999999983669977999996433322145323
Q ss_pred --EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf --599999878997898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 400 --~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
...|+|+|+|+|||++.+++||+||+.+ +.+||||||+|||+|++.|||+|+++|+||+ |+|+|+||.
T Consensus 278 ~~~~~i~V~D~G~GI~~e~~~~iF~pf~tt------k~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 278 RLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf 304899999908878989999737783679------9898177899999999986998999982891-999999963
No 28
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-34 Score=311.90 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999998899999776420138999999999850336878937899999999999999
Q gi|254780701|r 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 (495)
Q Consensus 221 ~~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~ 300 (495)
+.+++.-+-+...++.+.++..|+.|.....|...+|||||.||+.|.+|+++|..+..+ ..++++++++..+.+.+..
T Consensus 496 R~aiv~ivl~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~-~~d~~~~~~i~~~~~~~~~ 574 (750)
T COG4251 496 RKAIVGIVLRHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSD-ALDEEAKEFITFISRLTSL 574 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 999999999879999989988765158999999986104667999999999766634366-6575889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999874220015653101199999999999999997311221000367610104798999988777655688
Q gi|254780701|r 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 (495)
Q Consensus 301 L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi 380 (495)
|.+||+|++.+|+++.-..+ .+++|+..+++++...+.......+..+.+ .+ +|.+++|+.+++|++.||++|||
T Consensus 575 ~~~lidd~l~~s~l~~~~~~--l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp~v~~d~~~l~qv~~NLi~Nai 649 (750)
T COG4251 575 MQQLIDDLLTYSKLGLTEAP--LQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LPVVAADATQLGQVFQNLIANAI 649 (750)
T ss_pred HHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCEEEE--CC-CCEEECCHHHHHHHHHHHHHHHE
T ss_conf 99999977423120554577--777526789999997345311256524786--25-64464088899999999876552
Q ss_pred HCCCCC-CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 606798-8799999997698599999878997898785442265231577767899988805899999999619859999
Q gi|254780701|r 381 KFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 (495)
Q Consensus 381 K~T~~g-G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~ 459 (495)
||..++ ..|.|+..+.++ ...++|+|+|+||.++..++||..|.|+.. ...+.|||+||+|||+|+|.|+|+|+++
T Consensus 650 k~~~~e~~~i~I~~~r~ed-~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vE 726 (750)
T COG4251 650 KFGGPENPDIEISAERQED-EWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVE 726 (750)
T ss_pred ECCCCCCCCEEEEEECCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf 1078889815885332587-307985478777698999888998870375--6551477733899999999848458886
Q ss_pred EECCCCEEEEEEECHHHCCCC
Q ss_conf 798995298898472470746
Q gi|254780701|r 460 SKLREGVEVIAILPNTRVLNF 480 (495)
Q Consensus 460 S~~G~Gt~f~v~LP~~~~~~~ 480 (495)
|+||+|+||.++||..++.+.
T Consensus 727 s~~gEgsTF~f~lp~~~~e~~ 747 (750)
T COG4251 727 STPGEGSTFYFTLPVGGEEPG 747 (750)
T ss_pred ECCCCCEEEEEEEECCCCCCC
T ss_conf 047874168998405886766
No 29
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-31 Score=286.55 Aligned_cols=239 Identities=24% Similarity=0.371 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999--988999997764201389999999998503368789378999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENL--AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~--~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~L 304 (495)
+.+++...+..++...-++++ ...+.-|.+||||.+||++|..|++.-.. .+.....++..+.+..|..=++||-.+
T Consensus 360 er~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~-lLergr~e~a~~Nl~~I~~LteRma~I 438 (603)
T COG4191 360 EREQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARL-LLERGRTEEARENLERISALTERMAAI 438 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887899999878999987778998888888788743708999867778999-987588677776799999999999889
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998742200156531011999999999999999973112210003676101047989999887776556886067
Q gi|254780701|r 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 (495)
Q Consensus 305 i~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~ 384 (495)
.+.|-.|+|--.+ ..+++.+.+.+++....+.+.-++.+..+..+.++.+++|++|+.||+|||.|||+||+..+.
T Consensus 439 t~~Lk~FArk~~~----a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~ 514 (603)
T COG4191 439 TAHLKSFARKSRD----AAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMA 514 (603)
T ss_pred HHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999998336766----667765799999999998876413676265048987755641322099999999998999845
Q ss_pred --CCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf --988799999997698599999878997898785442265231577767899988805899999999619859999798
Q gi|254780701|r 385 --IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 (495)
Q Consensus 385 --~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~ 462 (495)
+.+.|.|++. .+++.+.|+|+|+|||||||.++++|+||+- ++...+|.||||+||+.|++.+||+|++.|.+
T Consensus 515 ~~~~~~i~i~~~-~~~~~v~l~VrDnGpGi~~e~~~~lFePF~T----tK~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~ 589 (603)
T COG4191 515 GQEDRRLSIRAQ-REGGQVVLTVRDNGPGIAPEALPHLFEPFFT----TKPVGKGLGLGLAISQNIARDLGGSLEVANHP 589 (603)
T ss_pred CCCCCEEEEEEE-ECCCEEEEEECCCCCCCCHHHHHHHCCCCCC----CCCCCCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 887871699987-1598699998269999897899861377503----67666775602898998999818807940278
Q ss_pred CCCEEEEEEECHH
Q ss_conf 9952988984724
Q gi|254780701|r 463 REGVEVIAILPNT 475 (495)
Q Consensus 463 G~Gt~f~v~LP~~ 475 (495)
+.|++|++.||++
T Consensus 590 ~~Ga~F~i~L~~a 602 (603)
T COG4191 590 EGGASFTIELRRA 602 (603)
T ss_pred CCCEEEEEEEECC
T ss_conf 8844899996157
No 30
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=100.00 E-value=2.6e-31 Score=287.33 Aligned_cols=195 Identities=24% Similarity=0.372 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
..++++.+.|||++|||++|.|++|+-. .++..+|+. +........++.+++.-+ .|
T Consensus 337 ~~~e~Lra~sHE~~n~L~~I~Gll~l~~--------~d~~~~~i~---~~~~~~~~~~~~l~~~i~----------~p-- 393 (541)
T PRK11086 337 NYADALRAQSHEFMNKLHVILGLLHLKS--------YDQLEDYIL---KTANNYQEEIGSLLGKIK----------SP-- 393 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHH---HHHHHHHHHHHHHHHHCC----------CH--
T ss_conf 9999987611666405799988886430--------899999999---999999999999998611----------68--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHH---HHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEE
Q ss_conf 999999999999999973112210003676101047989---999887776556886067--988799999997698599
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK---GMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQY 402 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~---~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~ 402 (495)
++......-...|+++++.+.++.+...|.. .|+. .|.||+.||++||+|+++ ++|.|.|.+.. .++.+.
T Consensus 394 ---~la~~Llgk~~~a~E~gi~L~i~~~~~l~~~-~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~-~~~~l~ 468 (541)
T PRK11086 394 ---VIAGFLLGKISRARELGITLIISEDSQLPDS-DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY-RHGWLH 468 (541)
T ss_pred ---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEE
T ss_conf ---8899999889999966985997067767788-86466657999999999999997316899679999998-899899
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf 99987899789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
|+|+|||+|||++++++||++||. ++.+|+||||+|||++++.|||+|+++|++|+||+|+++||...
T Consensus 469 i~V~D~G~GI~~e~~~~IFerg~S------tK~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~ 536 (541)
T PRK11086 469 IEVSDDGPGIAPEEIEAIFDKGYS------TKGSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDG 536 (541)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCC------CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 999977988597799887179874------18999110399999999985998999966999379999960687
No 31
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.97 E-value=7.8e-28 Score=257.51 Aligned_cols=219 Identities=37% Similarity=0.584 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200-15653101
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR-YELSESAI 326 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~-~~l~~~~v 326 (495)
.+..|++.++||+|||++++.++.+.+.... .+...+++..+....+++..+++++++++|.+.+. .....+++
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGL-----LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELV 188 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9999999998885897999999999974146-----52599999999999999999999999999764457442234645
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 19999999999999999731122100036761010479899998877765568860679887999999976985999998
Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
++..+++++...+......+.+.+....+ ....+.+|+.+++|++.||++||+||++ ++.|.|.+... ++.+.++|+
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~-~~~i~i~V~ 265 (336)
T COG0642 189 DLAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQD-DEQVTISVE 265 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEC-CCEEEEEEE
T ss_conf 59999999999999876634848998237-6607860788999999999998998668-98599999963-877999998
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf 789978987854422652315777678999888058999999996198599997989952988984724707
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~ 478 (495)
|+|+|||++.++++|++|++.....+ |+||||+|||++++.|||++.++|.||.||+|+++||.....
T Consensus 266 D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~~~ 333 (336)
T COG0642 266 DTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAA 333 (336)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 07899798899988188634799989----886329999999998799899950799977999998477655
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=8.3e-29 Score=265.88 Aligned_cols=213 Identities=24% Similarity=0.416 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
+-+....+.+||+|+||.+|.|-+|+|.... .++..++|.+.|.++++|+..|+|.+.-++- .-..+..|++
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l----pd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~N 202 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERAL----PDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVN 202 (363)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCH
T ss_conf 9999998778872285310144999997458----9867789999999999999999999875087----8985535431
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEE----E-CC
Q ss_conf 999999999999999973112210003676101047989999887776556886067----98879999999----7-69
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA----IGGRVHVTVGW----T-SG 398 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~----~gG~V~v~~~~----~-~~ 398 (495)
++.+++.+........ .+++++.-+.+|.+|.+++|+.+|.|++.||+.||...-. .+|+|.++.+- + .+
T Consensus 203 IH~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g 281 (363)
T COG3852 203 IHEVLERVRALVEAEF-ADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAG 281 (363)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCC
T ss_conf 9999999999985436-775588502799885323698999999999999999971677877856999722425887167
Q ss_pred C----EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 8----599999878997898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 399 ~----~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
. ...++|.|+|||||++-++++|.||. +.+++||||||+|+++|+..|||.|+.+|+||+ |+|++.+|.
T Consensus 282 ~r~rl~l~leViDNGPGVP~~L~~~lF~P~V------s~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~ 354 (363)
T COG3852 282 TRYRLALPLEVIDNGPGVPPDLQDHLFYPMV------SGREGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPI 354 (363)
T ss_pred CEEEEEEEEEEECCCCCCCHHHHHHCCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEEC
T ss_conf 4246631169861899998678643002302------068898661489999989852978987426894-589998633
Q ss_pred HH
Q ss_conf 47
Q gi|254780701|r 475 TR 476 (495)
Q Consensus 475 ~~ 476 (495)
.+
T Consensus 355 ~~ 356 (363)
T COG3852 355 RK 356 (363)
T ss_pred CC
T ss_conf 54
No 33
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.97 E-value=1.8e-28 Score=262.93 Aligned_cols=199 Identities=21% Similarity=0.340 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHH
Q ss_conf 7764201389999999998503368789378999999999999999999999999987422001-565310119999999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY-ELSESAISLIDIVRE 334 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~-~l~~~~v~L~~li~~ 334 (495)
+=|||++=.+-.... +.+-.-+.++++-|+|++++|+.+.+||.+|+..| ..+.. +-+.+.||+.+++++
T Consensus 493 vVHDLKNLvaQLSL~---l~NA~~Hk~NPeFq~DmL~Tv~~~v~RM~~ll~qL------r~~~~p~~~~~~~~l~~L~~~ 563 (696)
T TIGR02916 493 VVHDLKNLVAQLSLL---LRNAERHKDNPEFQDDMLETVESAVNRMKKLLAQL------REKGLPEEEKKTVDLVDLLRR 563 (696)
T ss_pred EEEHHHHHHHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHEEHHHHHHHH
T ss_conf 110258999999999---99887417896689999998999999999999997------306897405641038999999
Q ss_pred HHHHHHHHHHHCCCCCEECC-CCC-CHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCC
Q ss_conf 99999999973112210003-676-1010479899998877765568860679887999999976985999998789978
Q gi|254780701|r 335 CIIMLQLRAQEKNIEIFQKI-DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 (495)
Q Consensus 335 ~~~~~~~~A~~~~~~l~~~~-~~~-~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI 412 (495)
+.+.-. ..+-+.++++ +.+ ...+.+|+.+|++|+.||+.||+..||+.|.|.|++++..++..+|+|.|||+||
T Consensus 564 ~~~~k~----~q~p~~e~~~~~~~~rl~~~a~~erl~rV~gHL~QNAlEAT~~~G~V~~~~~~~~~~~a~i~i~D~G~GM 639 (696)
T TIGR02916 564 VIASKR----AQQPRPEVSIEDTDFRLSVRADRERLERVLGHLVQNALEATPEEGRVKIRVERECGGAAVIEIEDSGCGM 639 (696)
T ss_pred HHHHHH----HCCCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 999986----3189448997175417888752888999999999988860499962899987418882279998657899
Q ss_pred CHHH-HHHHCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 9878-5442265231577767899-98880589999999961985999979899529889847
Q gi|254780701|r 413 AEGE-IPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 413 ~~e~-~~~iF~~F~r~~~~~~~~~-~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
+++- ++|+|+||. +++. .|.|+|.+=||+.+|.|||+|+|+|+||+||+|||.||
T Consensus 640 ~~~FiR~rLF~PF~------tTK~~aGMGIG~YE~~~yv~e~GG~i~V~S~pG~Gt~ftl~LP 696 (696)
T TIGR02916 640 SEAFIRERLFKPFD------TTKGNAGMGIGVYECRQYVEELGGRIEVESTPGKGTIFTLVLP 696 (696)
T ss_pred CHHHHHHHCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECC
T ss_conf 85899840789975------4456678720189999999983890588863588548887449
No 34
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-23 Score=218.61 Aligned_cols=205 Identities=21% Similarity=0.325 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 7764201389999999998503368789---3789999999999999999999999999874220015653101199999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLN---NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~---~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li 332 (495)
++||+++|||-|...+|-|+... ++.- .+...++..+|.++...+.+|||+.-+++|.- ++..++.||++++
T Consensus 493 IAHEIKNPLTPIQLSAERl~rk~-gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~dL~~ll 567 (712)
T COG5000 493 IAHEIKNPLTPIQLSAERLLRKL-GKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKSDLRALL 567 (712)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHH
T ss_conf 98872499862200289999883-741234899999999999999999999999999871489----9877742299999
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC-------CCCCEEEEEEEEECCCEEEEEE
Q ss_conf 999999999997311221000367610104798999988777655688606-------7988799999997698599999
Q gi|254780701|r 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-------AIGGRVHVTVGWTSGRGQYISI 405 (495)
Q Consensus 333 ~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T-------~~gG~V~v~~~~~~~~~~~i~V 405 (495)
.++...++. ....+.+..+...++....+|+.+|+|++.||+.||...- .+++.|+++.. ..+|..++.|
T Consensus 568 ~e~~~L~e~--~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~-~~~g~i~v~V 644 (712)
T COG5000 568 KEVSFLYEI--GNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD-DADGRIVVDV 644 (712)
T ss_pred HHHHHHHHC--CCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE-CCCCEEEEEE
T ss_conf 999999962--6877699753189862532489999999999987199875310134677643899984-4798499998
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEECH
Q ss_conf 878997898785442265231577767899988805899999999619859999798-995298898472
Q gi|254780701|r 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-REGVEVIAILPN 474 (495)
Q Consensus 406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~-G~Gt~f~v~LP~ 474 (495)
.|+|.|.|.|.+.++||||. +.+++||||||+|||+|+|-|||.|++...| -.|.+..+.||.
T Consensus 645 ~DNGkG~p~e~r~r~~EPYv------Ttr~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 645 IDNGKGFPRENRHRALEPYV------TTREKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ECCCCCCCHHHHHHHCCCCE------ECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 10898799678643236714------21656666239999999996388277247899997679998365
No 35
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-21 Score=204.37 Aligned_cols=215 Identities=24% Similarity=0.337 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 89999977642013899999999985033687893789999999999999999999999999874220015653101199
Q gi|254780701|r 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 (495)
Q Consensus 250 s~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~ 329 (495)
.+-+.++|||+.+|||++..|.=.-+.. ....+.+....++.+|..=.+||..+|+.+-.|+|-.++.- ...||+|.
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A-~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~--~lqpV~L~ 528 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLA-LEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDE--SLQPVRLN 528 (673)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHH
T ss_conf 7788888988557568899999987888-85174588998999887799999999999999975257778--76411099
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEEEECCCEEEEEEEEC
Q ss_conf 999999999999997311221000367610104798999988777655688606798-8799999997698599999878
Q gi|254780701|r 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 330 ~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g-G~V~v~~~~~~~~~~~i~V~Dt 408 (495)
+.++.....++...+.+...+.... +.++|.||..+++||+.||+-||+..+.+. ..|.+.+.-++++..++.|.|+
T Consensus 529 ~~v~~AweLl~~khk~rQ~~Li~pt--D~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~Dn 606 (673)
T COG4192 529 SVVEQAWELLQTKHKRRQIKLINPT--DDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDN 606 (673)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC--CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECC
T ss_conf 9999999999854200024423776--53000001564999999999988866415786279986427642158998448
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 9978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
|+|-|-+-.+++|.||. ++++-|.||||+||..|+|.|.|++.+.|..-+|.++.+.|-..
T Consensus 607 GqGwp~~l~dkLl~PFt------tsK~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 607 GQGWPHELVDKLLTPFT------TSKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred CCCCCHHHHHHHCCCCC------CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEC
T ss_conf 99984567788607766------43100555325678999998427444865513574899998413
No 36
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.91 E-value=3.4e-23 Score=217.73 Aligned_cols=111 Identities=34% Similarity=0.579 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 79899998877765568860679887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL 442 (495)
+|+.+|+|++.||++||+||+++++.|.|++.. .++.+.|+|+|+|+|||+++++++|+|||+.++. .+..+|+||||
T Consensus 1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL 78 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLER-DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR-SRKIGGTGLGL 78 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHCCCCCEECCCC-CCCCCCCCHHH
T ss_conf 988999999999999999967799789999998-3999999999889973989996426994777999-98879766489
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 999999996198599997989952988984724
Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
+|||+++++|||+++++|++|+||+|+++||..
T Consensus 79 ~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~ 111 (111)
T smart00387 79 SIVKKLVELHGGEISVESEPGGGTTFTITLPLE 111 (111)
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 999999998799899996599818999999819
No 37
>pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Probab=99.90 E-value=1.2e-22 Score=213.20 Aligned_cols=110 Identities=34% Similarity=0.569 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 79899998877765568860679887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL 442 (495)
+|+.+|.||+.||++||+||++++|.|.|++.. .++.+.|+|+|+|+|||+++++++|+||||.+.. .+..+|+||||
T Consensus 1 ~d~~~l~~i~~nll~NAik~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL 78 (111)
T pfam02518 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLER-DGGRLRITVEDNGIGIPPEDLPKIFEPFFRTDKD-SRKVGGTGLGL 78 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CCCCCCCCHHH
T ss_conf 988999999999999999977999759999999-5999999999899995989998874991777999-97779776479
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 99999999619859999798995298898472
Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
+|||++++.|||+++++|++++||+|+++||.
T Consensus 79 ~i~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~ 110 (111)
T pfam02518 79 SIVRKLVELHGGTITVESEPGGGTTFTFTLPL 110 (111)
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEEEEEEEE
T ss_conf 99999999879989999659983899999970
No 38
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.89 E-value=8.1e-20 Score=188.79 Aligned_cols=235 Identities=18% Similarity=0.296 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999889999977642013899999999985033687893789999999999999999999999999
Q gi|254780701|r 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 (495)
Q Consensus 232 ~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdl 311 (495)
++.+++|++.-|.--++|..|+.|+++||++|+..|.-.++-|.+.. + .+.+..+...++++.++|+++--+
T Consensus 433 nKkLq~AqreYeKN~qaRk~~l~Ni~~el~~Pl~~l~~~~~~l~~~~-----~---~~~l~~L~~qs~~i~~lidnI~Ll 504 (881)
T PRK10618 433 NKKLQQAQREYEKNQQARRAFLQNIGDELKEPVQSLAELAAQLNAPE-----S---QQLLKQLAEQADVLVRLIDNIQLA 504 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999866999999999999998778999999999862524-----4---679999999999999999889999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 874220015653101199999999999999997311221000367610-1047989999887776556886067988799
Q gi|254780701|r 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 312 srleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.++|++.-++..++|.+.+++++++.+.-|...+||+++-.....++- ...||+..|++++.=|+.=||--|.= |+|+
T Consensus 505 n~LEsq~W~~~~~~Fsl~~Lid~~l~e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~~-GKIt 583 (881)
T PRK10618 505 NMLENDEWKSEQTLFSLQDLIDEVVPEVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQY-GKIT 583 (881)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CEEE
T ss_conf 888605676567710499999999998768987427033323479889970478999999999999888111445-2599
Q ss_pred EEEEEECC--CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 99999769--8599999878997898785442265231577767899988805899999999619859999798995298
Q gi|254780701|r 391 VTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 391 v~~~~~~~--~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f 468 (495)
+.+..+++ +...|+|.|||.|+..+++..+=-||---... .+-..|+||-..+|++|+.+|||+++++|++|-||.+
T Consensus 584 l~v~~~~~~~~~l~i~i~DTG~Gls~~El~Nl~~PFl~~t~~-Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y 662 (881)
T PRK10618 584 LEVDQDESSEERLTFRILDTGEGVSIHEIDNLHFPFLNQTQG-DRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRY 662 (881)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCHHH-HHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCE
T ss_conf 998258777863899995478887888885537977683122-1113788729999999999848967884156776647
Q ss_pred EEEECHHH
Q ss_conf 89847247
Q gi|254780701|r 469 IAILPNTR 476 (495)
Q Consensus 469 ~v~LP~~~ 476 (495)
+++||...
T Consensus 663 ~i~lp~~~ 670 (881)
T PRK10618 663 SVHLKMLP 670 (881)
T ss_pred EEEECCCC
T ss_conf 99842676
No 39
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.87 E-value=3.1e-19 Score=183.75 Aligned_cols=193 Identities=19% Similarity=0.325 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 99977642013899999999985033687893789999999999999999999999999874220015653101199999
Q gi|254780701|r 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 (495)
Q Consensus 253 lA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li 332 (495)
|-..|||.++-|++|.|..++=. -++..+|+.. ..+.-..+++.+..--+ .+++
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~--------yd~a~~~I~~---~~~~qq~~~~~l~~~i~---------------~~~l 390 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGE--------YDDALDYIQQ---ESEEQQELIDSLSEKIK---------------DPVL 390 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHH---HHHHHHHHHHHHHHHCC---------------CHHH
T ss_conf 98852888888999987885053--------7899999999---87640456899998512---------------0888
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCHH--CCCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCCEEEEEEEE
Q ss_conf 9999999999973112210003676101--047989999887776556886067---98879999999769859999987
Q gi|254780701|r 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGRGQYISIKD 407 (495)
Q Consensus 333 ~~~~~~~~~~A~~~~~~l~~~~~~~~~~--v~~D~~~L~qvl~NLi~NAiK~T~---~gG~V~v~~~~~~~~~~~i~V~D 407 (495)
....---...|+++|+++.++....+|. -.-|+.-+--++.||+.||...+. ++..|.+..+ +.++...|+|.|
T Consensus 391 Ag~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~-~~~~~lvieV~D 469 (537)
T COG3290 391 AGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS-DRGDELVIEVAD 469 (537)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCCEEEEEEEC
T ss_conf 9998868999997296599757986788987667678999999988778888515578967999998-369879999957
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 8997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
|||||||+.+++||+.=|- +...+|.|.||++||++|+.+||.|+++|+++.||+|++.+|....
T Consensus 470 ~G~GI~~~~~~~iFe~G~S-----tk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~ 534 (537)
T COG3290 470 TGPGIPPEVRDKIFEKGVS-----TKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKE 534 (537)
T ss_pred CCCCCCHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9999896887778734841-----4677887612889999998749669995078981499998888766
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.86 E-value=6e-21 Score=198.51 Aligned_cols=102 Identities=38% Similarity=0.664 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998877765568860679-8879999999769859999987899789878544226523157776789998880589999
Q gi|254780701|r 368 MRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 (495)
Q Consensus 368 L~qvl~NLi~NAiK~T~~-gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk 446 (495)
|+|++.||++||+||+++ .+.|.|++.. +++.+.|+|+|+|+|||+++++++|+||+|... ++..+|+||||+|||
T Consensus 1 l~~vl~nLl~NAik~~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GlGL~i~~ 77 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVER-DGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR--SRKGGGTGLGLSIVK 77 (103)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHH
T ss_conf 96999999999998678999489999998-399999999977994088999760697501788--877898650599999
Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99996198599997989952988984
Q gi|254780701|r 447 SIMANHGGQFLIRSKLREGVEVIAIL 472 (495)
Q Consensus 447 ~lve~hgG~i~v~S~~G~Gt~f~v~L 472 (495)
+++++|||+|+++|++|+||+|+++|
T Consensus 78 ~i~~~~~G~i~i~s~~~~Gt~~~i~l 103 (103)
T cd00075 78 KLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred HHHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 99998899899996599919999989
No 41
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.85 E-value=5.3e-19 Score=181.80 Aligned_cols=217 Identities=23% Similarity=0.320 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
.| +=|.++=|-|.-|||-|..-..+|....-+...++...+.++....++..-. =.|++.=.-+..=...||+
T Consensus 276 ~r-Etl~AAIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~------e~L~~~IP~s~~e~~~pVN 348 (496)
T TIGR02938 276 LR-ETLSAAIHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREAL------EALEKVIPQSDAEAVVPVN 348 (496)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH------HHHCCCCCCCCCCCCCCCC
T ss_conf 76-6688888885287107889999863205832379799999999988639999------9750578877244546642
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCCEEEE
Q ss_conf 999999999999999973112210003676101047989999887776556886067988----7999999976985999
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG----RVHVTVGWTSGRGQYI 403 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG----~V~v~~~~~~~~~~~i 403 (495)
|+++++|+.....++--+.|+-+...=.+.+|++.|-|.++|-++..||+|||.-+...| +..|.. +..++.+.+
T Consensus 349 lN~~lrdvi~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t-~~~~~li~~ 427 (496)
T TIGR02938 349 LNQVLRDVITLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILT-AVEDDLIRV 427 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHCCCEEEE
T ss_conf 7789999998610557557541516561016222078525789999999999998530784102310102-230856899
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 99878997898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
+|.|+|||||++-.-++|||||-.-.+. ...|.|.||+.+++||..|+|=|.++..+-+|+...+.||.
T Consensus 428 ~i~DsGPGIP~dlr~kvFEPFFttK~~~--Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~~ 496 (496)
T TIGR02938 428 EIEDSGPGIPADLRLKVFEPFFTTKASS--GRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFEV 496 (496)
T ss_pred EEEECCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
T ss_conf 9973587987244225236732268887--78423346268899975049879736888777357776239
No 42
>KOG0519 consensus
Probab=99.84 E-value=5.5e-22 Score=207.38 Aligned_cols=235 Identities=29% Similarity=0.336 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999889--99997764201389999999998503368789378999999999999999999999999987
Q gi|254780701|r 236 DETRKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 (495)
Q Consensus 236 ~~a~~~ae~a~~~Ks~--FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr 313 (495)
.+....+|++.-.+++ |++++|||+|||++. |....+. ++..+..++.+.+....++..+..++|+++|.++
T Consensus 206 ~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~ 279 (786)
T KOG0519 206 QKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLS----DTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSK 279 (786)
T ss_pred HHHHCCCCCHHCCCCCHHCCCCCCCEEECCCCC--CCCCEEE----CCCCCHHHHHHHCCCHHHHHCHHHHHHHHHHHCC
T ss_conf 566512530002742011134456324434445--6641220----3442156898743001220000137777640113
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4220015653101199999999999999997311221000367610-104798999988777655688606798879999
Q gi|254780701|r 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 314 leag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
++.|.+++...+|++..++..+...+.+.+..++..+....+.+.| .+.+|+.+++||+.|+++||||||.. |.|..+
T Consensus 280 v~~g~~~l~~~rf~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~-~~i~~~ 358 (786)
T KOG0519 280 VESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHA-GHLEES 358 (786)
T ss_pred CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC-CCEEEE
T ss_conf 5323554032234526666777877666551367346520787776420356101100033320144354446-622466
Q ss_pred EEEECCC-----------------------------------------------EEEEEEEECCCCCCHHHHHH-HCCCC
Q ss_conf 9997698-----------------------------------------------59999987899789878544-22652
Q gi|254780701|r 393 VGWTSGR-----------------------------------------------GQYISIKDNGPGIAEGEIPT-VLTSF 424 (495)
Q Consensus 393 ~~~~~~~-----------------------------------------------~~~i~V~DtG~GI~~e~~~~-iF~~F 424 (495)
+...+.. ...+.+.|+|.||+.+-... +|..|
T Consensus 359 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 438 (786)
T KOG0519 359 VIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSL 438 (786)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHHHHHHH
T ss_conf 65121100467899754577653515566788874133124220421223576652022366640685023304655545
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 31577767899988805899999999619859999798995298898472470
Q gi|254780701|r 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 425 ~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
-|++.+.++..+|+|+|+.|++.+++.|+|.+.+.+.++.|++|++.++...-
T Consensus 439 ~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~ 491 (786)
T KOG0519 439 IQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTN 491 (786)
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 14661003456876453322232889988674321100347522233123568
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.81 E-value=1.2e-16 Score=161.48 Aligned_cols=206 Identities=18% Similarity=0.224 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999889999977642013899999999985033687893789999999999999999999999999874220
Q gi|254780701|r 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 (495)
Q Consensus 238 a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag 317 (495)
+.++.+.+..+|.-+|--+.|..+++|+.|.+.+.+-.... .+++.++.+....+-...|. +|.+.|--|
T Consensus 594 aee~l~asL~EKE~LLkEIHHRVKNNLQiIsSLL~LQar~~----~d~ear~aL~esq~RI~SmA-lVHe~Ly~S----- 663 (807)
T PRK13560 594 AEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL----HDEEAKCAFAESQDRICAMA-LAHEKLYQS----- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH-HHHHHHHCC-----
T ss_conf 99999999998899999877675203999999999887655----99999999999999999999-999998569-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEECCCCCCHHCCCCH-HHHHHHHHHHHHHHHHCCCC---CCEEEE
Q ss_conf 01565310119999999999999999731--1221000367610104798-99998877765568860679---887999
Q gi|254780701|r 318 RYELSESAISLIDIVRECIIMLQLRAQEK--NIEIFQKIDPSLSSVWADE-KGMRQVILNLLSNAVKFTAI---GGRVHV 391 (495)
Q Consensus 318 ~~~l~~~~v~L~~li~~~~~~~~~~A~~~--~~~l~~~~~~~~~~v~~D~-~~L~qvl~NLi~NAiK~T~~---gG~V~v 391 (495)
-+...+++.+.+++++..+....... .+.+.++.+ ...+-.|. .-|..|+.+||+||+||.-+ .|.|.|
T Consensus 664 ---~dl~~Id~~~yi~~L~~~L~~s~~~~~~~I~l~vd~d--~~~L~~d~AiPLgLIlnELVtNAlKHAF~~~~~G~I~I 738 (807)
T PRK13560 664 ---EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDAD--DGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKV 738 (807)
T ss_pred ---CCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--CCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf ---9976572999999999999997378986389999736--70565888767999999999998986089999827999
Q ss_pred EEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99997698599999878997898785442265231577767899988805899999999619859999798995298898
Q gi|254780701|r 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 (495)
Q Consensus 392 ~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~ 471 (495)
+++...++.+.++|+|+|+|+|++ |+ ...+.+|||.||+.|+++.+|+|+++|. .||+|+++
T Consensus 739 sl~~~~~~~v~L~V~DnG~GlP~~-----fd-----------~~~s~sLGL~LV~~Lv~QL~G~l~i~s~--~Gt~f~I~ 800 (807)
T PRK13560 739 EIREQGDGMVNLCVADDGIGLPAG-----FD-----------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIR 800 (807)
T ss_pred EEEECCCCEEEEEEEECCCCCCCC-----CC-----------CCCCCCCHHHHHHHHHHHCCCEEEEECC--CCEEEEEE
T ss_conf 999867998999998798158999-----89-----------7889997699999999974989999859--98699999
Q ss_pred ECHHH
Q ss_conf 47247
Q gi|254780701|r 472 LPNTR 476 (495)
Q Consensus 472 LP~~~ 476 (495)
||.++
T Consensus 801 FPl~p 805 (807)
T PRK13560 801 FPMSP 805 (807)
T ss_pred EECCC
T ss_conf 71899
No 44
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.79 E-value=4.9e-15 Score=147.82 Aligned_cols=193 Identities=20% Similarity=0.255 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9977642013899999999----985033687893789999999999999999999999999874220015653101199
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSE----VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~e----lL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~ 329 (495)
+.++|||-.+|.-.+.|.. +|........+.++..+.+..+.+.......-+.++|.--|+ .....+|.
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl-------~l~~~~L~ 438 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRL-------TIQEANLG 438 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHH
T ss_conf 89999844126657899999999999874225653889999999999999999999999998322-------67756879
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHH---HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 9999999999999973112210003676101047989---9998877765568860679887999999976985999998
Q gi|254780701|r 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK---GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 330 ~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~---~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
+-++..++.|.. +.++.+.+++.. |...-|+. .+-||+.+.++|++||+.. +.|.|++...+++.+.++|+
T Consensus 439 ~AL~~~~~~~~~---q~~~~i~l~~~l--~~~~l~~~~~i~llrIvqEALtN~~KHA~A-~~V~V~~~~~~~~~v~l~V~ 512 (568)
T PRK10935 439 SALEEMLDQLRN---QTSAKITLDCRL--PSQALDAQQQVHLLQIIREATLNAIKHANA-SEIAVSCVTNPDGEVTVSIR 512 (568)
T ss_pred HHHHHHHHHHHH---HCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCEEEEEEE
T ss_conf 999999999975---119469997068--877788889999999999999999980899-87999999748987999997
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 78997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
|+|+||++.. .++.+.||.|.|+-++.+||++.++|.||+||+++++||....
T Consensus 513 DnG~Gf~~~~------------------~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~~ 565 (568)
T PRK10935 513 DDGVGIGELK------------------EPEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQE 565 (568)
T ss_pred ECCCCCCCCC------------------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 7994789878------------------8899857599999999669989999779996699998589888
No 45
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.77 E-value=1.9e-11 Score=116.97 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999988999997764201389999999998503368789378999999999999999
Q gi|254780701|r 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 (495)
Q Consensus 222 ~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L 301 (495)
.++..|+.+.+...++-- .+||. +|.+.---.=-|+=+=|++|+-.+..+++.. .+++..++..+.|.+.+.++
T Consensus 280 ~~L~~eL~~nr~LsrqLI-~aQE~--ERr~IARELHDEiGQ~LTAIr~~a~~i~r~~---~~~~~~~~~a~~I~~l~~~i 353 (497)
T PRK11644 280 QSLQKELARNRHLAERLL-ETEES--VRRDVARELHDEIGQTITAIRTQASIVKRLA---ADNASVKQSGQLIEQLSLGV 353 (497)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999-97699--9999999700034059999999999986326---99766899999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999874220015653101199999999999999997311221000367610104-798999988777655688
Q gi|254780701|r 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380 (495)
Q Consensus 302 ~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~-~D~~~L~qvl~NLi~NAi 380 (495)
.+-+.+++.-=| +...+...|.+-+++.++.+... ..|+....+.+.+...+- .-+.-+-||+.--+.|++
T Consensus 354 ~~~vR~ll~~LR------P~~LDdLGL~~AL~~Lv~e~~~~--~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~ 425 (497)
T PRK11644 354 YDAVRRLLGRLR------PRQLDDLTLEQAIRSLMRELELE--DRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIV 425 (497)
T ss_pred HHHHHHHHHHCC------CCCHHHCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998609------03111248999999999987652--5795599982687667982468899999999999999
Q ss_pred HCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 60679887999999976985999998789978987854422652315777678999888058999999996198599997
Q gi|254780701|r 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 (495)
Q Consensus 381 K~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S 460 (495)
||..+ .+|.|++.. .++.+.++|+|+|+|+++++ . ..|+||.=-|+=+++.||++.++|
T Consensus 426 KHA~A-~~V~I~L~~-~~~~l~L~I~DDG~Gf~~~~-----------------~--~~G~GL~GMrERV~aLGG~l~I~S 484 (497)
T PRK11644 426 KHADA-SAVTIQGWQ-QDERLMLVIEDNGSGLPPGS-----------------G--QQGFGLRGMQERVSALGGTLTISC 484 (497)
T ss_pred HCCCC-CEEEEEEEE-CCCEEEEEEEECCCCCCCCC-----------------C--CCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf 73788-769999997-69989999988998989898-----------------9--999892679999997499799982
Q ss_pred ECCCCEEEEEEECH
Q ss_conf 98995298898472
Q gi|254780701|r 461 KLREGVEVIAILPN 474 (495)
Q Consensus 461 ~~G~Gt~f~v~LP~ 474 (495)
++ ||+.+|++|.
T Consensus 485 ~~--GT~I~V~LP~ 496 (497)
T PRK11644 485 TH--GTRLSVTLPQ 496 (497)
T ss_pred CC--CCEEEEECCC
T ss_conf 89--9779995899
No 46
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.71 E-value=6.9e-11 Score=112.25 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHH
Q ss_conf 999999999999987422001565310119999999999999999731122100036761010-4798999988777655
Q gi|254780701|r 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377 (495)
Q Consensus 299 ~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~ 377 (495)
+.+.+++.+-++-.|-=- ..+.+.+.+-..+...+..........-+.+......+..+.+ ..-+.-+-+++.--++
T Consensus 212 ~~i~~~~~e~l~evR~~v--~~Lrp~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEalt 289 (365)
T COG4585 212 KEIEKLLREALQEVRALV--RDLRPVELEGLGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALT 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999--971973221211799999999998775083788615764467996899999999999998
Q ss_pred HHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 68860679887999999976985999998789978987854422652315777678999888058999999996198599
Q gi|254780701|r 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 (495)
Q Consensus 378 NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~ 457 (495)
||+||+.+ ..|.|+... .++.+.++|+|+|.|.+++... .|+||.=-|+=++..||+++
T Consensus 290 N~~rHa~A-~~v~V~l~~-~~~~l~l~V~DnG~Gf~~~~~~-------------------~~~GL~~mreRv~~lgG~l~ 348 (365)
T COG4585 290 NAIRHAQA-TEVRVTLER-TDDELRLEVIDNGVGFDPDKEG-------------------GGFGLLGMRERVEALGGTLT 348 (365)
T ss_pred HHHHCCCC-CEEEEEEEE-CCCEEEEEEEECCCCCCCCCCC-------------------CCCCHHHHHHHHHHCCCEEE
T ss_conf 99875784-569999998-2988999999899788976457-------------------77667669999998699899
Q ss_pred EEEECCCCEEEEEEECH
Q ss_conf 99798995298898472
Q gi|254780701|r 458 IRSKLREGVEVIAILPN 474 (495)
Q Consensus 458 v~S~~G~Gt~f~v~LP~ 474 (495)
++|+||+||++++++|.
T Consensus 349 i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 349 IDSAPGQGTTVTITLPL 365 (365)
T ss_pred EEECCCCCEEEEEEEEC
T ss_conf 98559997799999509
No 47
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.70 E-value=8.9e-13 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
+|++..--.-.+|-+.|+.++-.+++++... +..+++.++.+..|.+....-..-+-++|.--|. ....-+
T Consensus 361 ER~~IARELHDslaQ~Ls~Lkiq~~~l~~~~--~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~-------~l~~~~ 431 (569)
T PRK10600 361 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQIRNELNASWAQLRELLTTFRL-------QLTEPG 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCC
T ss_conf 9999999988887222789999999999730--5798889999999999999999999999998355-------777566
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 9999999999999999731122100036761010479-899998877765568860679887999999976985999998
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
+.+-++..++.|.. +-|+.+.++....+..+-.+ ...+-||+..-++|++||... ..|.|++.. .++.+.++|+
T Consensus 432 l~~aL~~~i~~~~~---~~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~A-~~v~V~l~~-~~~~~~l~I~ 506 (569)
T PRK10600 432 LRPALEASCEEFSA---RFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQA-SEVVVTVAQ-NDNQVKLSVQ 506 (569)
T ss_pred HHHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEE-CCCEEEEEEE
T ss_conf 79999999999997---609779999558866798789999999999999999970899-879999997-6998999998
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCCC
Q ss_conf 789978987854422652315777678999888058999999996198599997989952988984724707469
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~~ 481 (495)
|+|+|+|++ ..++.+.||.|-|.=++..||++.++|.||+||+++++||+..-....
T Consensus 507 DdG~Gf~~~------------------~~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P~~~~~~~ 563 (569)
T PRK10600 507 DNGCGVPEN------------------AERSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIPEKTFTDV 563 (569)
T ss_pred ECCCCCCCC------------------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 899898988------------------888999781599999997699899986699958999997589887413
No 48
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.62 E-value=4.7e-10 Score=105.06 Aligned_cols=193 Identities=22% Similarity=0.321 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9977642013899999999----985033687893789999999999999999999999999874220015653101199
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSE----VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~e----lL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~ 329 (495)
+.++-||---+.-.+.|.. +|+.. ..+...++.++.+..|+.....--+-+.+||.--|+ ..+.-+|.
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~-~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~ 445 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTA-IPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELP 445 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHH
T ss_conf 9999987789999999999999999842-786566879999999999999999999999998787-------60567638
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC
Q ss_conf 99999999999999731122100036761010479-89999887776556886067988799999997698599999878
Q gi|254780701|r 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 330 ~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt 408 (495)
+-+++.++.|. .+-|+++++++.-.+..+-++ ...+-||+.-=++||+||+. +.+|.|.+.. .+|...+.|+|+
T Consensus 446 ~AL~~~~~~f~---~qtg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~-~~g~~~~~VeDn 520 (574)
T COG3850 446 PALEQMLAEFS---NQTGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQ-NDGQVTLTVEDN 520 (574)
T ss_pred HHHHHHHHHHH---HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEE-CCCEEEEEEEEC
T ss_conf 99999999997---346973887256898899878999999999999998998526-6758999986-596489999428
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
|+|||+.+ ..+| --||.|-+.=++..||.+.+++.+|+||.+.++||.+..
T Consensus 521 G~Gi~~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~~~~ 571 (574)
T COG3850 521 GVGIDEAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPEEN 571 (574)
T ss_pred CCCCCCCC-----------------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 83779756-----------------7788-723699999999725757776459998179999564134
No 49
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.59 E-value=1.1e-12 Score=127.49 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHH---HHHH
Q ss_conf 9999999999999987422001565310119999999999999999731122100036761010479899998---8777
Q gi|254780701|r 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ---VILN 374 (495)
Q Consensus 298 ~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~q---vl~N 374 (495)
...+.+++++| +.+-+.++. +.+..+.+..-+..+-.|.+.|..+.+.+..+ .+..|..-|.+ -|..
T Consensus 315 ~~~l~r~~~dL------q~~vm~~RM--vP~~~lf~r~~R~VRdlar~~gK~V~L~i~G~--dtelDr~Ile~L~dPL~H 384 (662)
T PRK10547 315 MGQLQRNARDL------QESVMSIRM--MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS--STELDKSLIERIIDPLTH 384 (662)
T ss_pred HHHHHHHHHHH------HHHHHHHCC--EEHHHHHHHHHHHHHHHHHHHCCEEEEEEECC--CEEEHHHHHHHHHHHHHH
T ss_conf 99999999999------999998625--21899888878999999998698259999668--677719999988879999
Q ss_pred HHHHHHHCC------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------------------HHHC
Q ss_conf 655688606------------7988799999997698599999878997898785---------------------4422
Q gi|254780701|r 375 LLSNAVKFT------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI---------------------PTVL 421 (495)
Q Consensus 375 Li~NAiK~T------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~---------------------~~iF 421 (495)
||.|||-|- |+-|.|.+++.. .++.++|+|+|+|.||..+.. .-||
T Consensus 385 LlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~~-~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~LIF 463 (662)
T PRK10547 385 LVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH-QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGMLIF 463 (662)
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 987424304899889987599972799999998-5999999998189998999999999984999853389999999971
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 422 ~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
.|=+-....- +.-.|=|.||-+||.-++.+||+|.|+|++|+||+|+++||..
T Consensus 464 ~PGFSTa~~V-t~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPlT 516 (662)
T PRK10547 464 APGFSTAEQV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLT 516 (662)
T ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCH
T ss_conf 7998623223-5688866468999999998299899996089807999978878
No 50
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.57 E-value=4.5e-10 Score=105.22 Aligned_cols=181 Identities=23% Similarity=0.249 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 77642013899999999985033687893789999999999999999999999999874220015653101199999999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~ 335 (495)
..|.|.+-|++|..+++.- +.+...+ .+.. +..++. .++++.+ ..+++.+-+.-+
T Consensus 266 ~pHfL~NtL~~I~~~~~~~--------~~~~~~~---~v~~----l~~llR--~~l~~~~--------~~~~l~~E~~~~ 320 (456)
T COG2972 266 NPHFLYNTLETIRMLAEED--------DPEEAAK---VVKA----LSKLLR--YSLSNLD--------NIVTLEIELLLI 320 (456)
T ss_pred CCHHHHHHHHHHHHHHHHC--------CHHHHHH---HHHH----HHHHHH--HHHHCCC--------CCCCHHHHHHHH
T ss_conf 6168999999999998735--------7999999---9999----999999--7500655--------534199999999
Q ss_pred HHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 99999999731122100036761010-4798999988777655688606----798879999999769859999987899
Q gi|254780701|r 336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTSGRGQYISIKDNGP 410 (495)
Q Consensus 336 ~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T----~~gG~V~v~~~~~~~~~~~i~V~DtG~ 410 (495)
..-+..+-.+-+..+.+..+-+.... .-||. -++.+|+.||++|. .+||.|.+.+.. .++...++|+|+|+
T Consensus 321 ~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~-~~~~i~i~i~Dng~ 396 (456)
T COG2972 321 EKYLEIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKK-QDDVIQISISDNGP 396 (456)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEECCCCC
T ss_conf 99999998199879999720375332023278---898887999999862046999579999940-58799999776999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEECHHH
Q ss_conf 789878544226523157776789998-880589999999961985--999979899529889847247
Q gi|254780701|r 411 GIAEGEIPTVLTSFGQGSIAIKSAEQG-VGLGLPIAQSIMANHGGQ--FLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 411 GI~~e~~~~iF~~F~r~~~~~~~~~~G-tGLGLaIvk~lve~hgG~--i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
||.++..+.+.+.= ++ +|+||.=+++....|-|+ +.++|++|+||+..++.|...
T Consensus 397 g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 397 GIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred CCCHHHHHHHHHCC-----------CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC
T ss_conf 95878886676415-----------77777358879999987189762179996489589999986301
No 51
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-08 Score=92.09 Aligned_cols=183 Identities=19% Similarity=0.320 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHH
Q ss_conf 776420138999999999850336878937899999999999999999999999998742200156-5310119999999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL-SESAISLIDIVRE 334 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l-~~~~v~L~~li~~ 334 (495)
.--|+-+-.|+|.--+.+.+.-. +++..++..+.|+.=+.+..+-+..+| +++.+ ......+...++.
T Consensus 310 LHDeIGQnITAIr~Qa~ivkR~~----~~~q~kqaas~Ie~LslrI~~svrqLL-------~rLRP~~LDdL~l~qai~~ 378 (497)
T COG3851 310 LHDEIGQNITAIRTQAGIVKRAA----DNAQVKQAASLIEQLSLRIYDSVRQLL-------GRLRPRQLDDLTLEQAIRS 378 (497)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCCCCCCHHHHHHH
T ss_conf 89986460789999999998657----977788788999999989999999998-------7159732222578999999
Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCC
Q ss_conf 999999999731122100036761010-4798999988777655688606798879999999769859999987899789
Q gi|254780701|r 335 CIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 (495)
Q Consensus 335 ~~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~ 413 (495)
++++++. +++|+.-..+..++.... ..-+.-|-+++..++.|-+||.++ ..|++... .++....++|+|+|.|+|
T Consensus 379 l~~Em~~--~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A-S~V~i~l~-~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 379 LLREMEL--EERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA-SAVTIQLW-QQDERLMLEIEDDGSGLP 454 (497)
T ss_pred HHHHHHH--HHCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCC-CEEEEEEE-ECCCEEEEEEECCCCCCC
T ss_conf 9998525--4456279870566766788543772899999999999750022-62799995-178189999825886789
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 8785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 414 ~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
++. +=+|.||-=-++=|.+.||++.++|+ .||.+.|.||.
T Consensus 455 ~~~-------------------~v~G~Gl~GmrERVsaLGG~l~lssq--~GTrviVnLPq 494 (497)
T COG3851 455 PGS-------------------GVQGFGLTGMRERVSALGGTLTLSSQ--HGTRVIVNLPQ 494 (497)
T ss_pred CCC-------------------CCCCCCCCHHHHHHHHHCCCEEEEEC--CCCEEEEECCH
T ss_conf 999-------------------85675720089999974782588743--68589994603
No 52
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-11 Score=118.09 Aligned_cols=170 Identities=16% Similarity=0.257 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHH--
Q ss_conf 999999999999999999874220015653101199999999999999997311221000367610104798999988--
Q gi|254780701|r 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV-- 371 (495)
Q Consensus 294 i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qv-- 371 (495)
.......|.++..+|- .+.|..+..| +..++...-+..+-.+..-|.++...+... ...-|..-|+++
T Consensus 366 l~~~~~~l~~~~~~LQ------d~vm~~RMvP--~~~vf~RfpR~VRdla~~lgK~V~L~ieG~--~telDksIlE~l~d 435 (716)
T COG0643 366 LDEALRQLSRLTTDLQ------DEVMKIRMVP--FEQVFSRFPRMVRDLARKLGKQVELVIEGE--DTELDKSILERLGD 435 (716)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHCEE--HHHHHHHCCHHHHHHHHHHCCEEEEEEECC--CEEEHHHHHHHHCC
T ss_conf 9999999999999999------9999970003--999874440999999998699169999648--71342989988646
Q ss_pred -HHHHHHHHHHCC------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------------------
Q ss_conf -777655688606------------7988799999997698599999878997898785---------------------
Q gi|254780701|r 372 -ILNLLSNAVKFT------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------------------- 417 (495)
Q Consensus 372 -l~NLi~NAiK~T------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------------------- 417 (495)
|..||.||+-|- |+-|.|.+++.. +++.+.|+|+|+|.||..+.+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~-~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH-EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred CHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCHH
T ss_conf 6998885001105898899987598986369999983-798699999568998799999999998299886775207999
Q ss_pred ---HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf ---4422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 418 ---PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 418 ---~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
.-||.|=|-....- +.-.|-|.||=+||+-++.+||+|.++|++|+||+|++.||..
T Consensus 515 Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 515 EILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred HHHHHHHCCCCCCCHHH-HCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf 99988736998734111-0165776578999999997399899996278976999966879
No 53
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.37 E-value=2.4e-09 Score=99.05 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495)
|.-++.-+.|-.++=|+.|...+.+..... .++ ..+.+. ++ .+.+..+|.+..--++-....++.
T Consensus 19 ~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~----~~~-~~e~~~---~~-------~~Ri~sla~~He~L~~s~~~~~~~ 83 (221)
T COG3920 19 KELLLREIHHRVKNNLQIISSLLRLQARKF----EDE-VLEALR---ES-------QNRIQSLALIHELLYKSGDDTWDF 83 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCH-HHHHHH---HH-------HHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 999999999998879999999999777523----667-899999---99-------889999999999980688651759
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCC---CCEEEEEEEEECCC-EEEE
Q ss_conf 999999999999999731122100036761010479-899998877765568860679---88799999997698-5999
Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSGR-GQYI 403 (495)
Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~---gG~V~v~~~~~~~~-~~~i 403 (495)
...++.+...+.+....+++.+.....|+ ..+-.| ..-|--|+.-|++||+||--. +|.|.|.+...+++ ...+
T Consensus 84 ~~y~~~L~~~l~~~~~~~~~~~~~~~~~~-~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l 162 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPN-VFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLL 162 (221)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCC-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 99999999998876278875278822886-22673678899999999999889861788899779999998479971799
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 9987899789878544226523157776789998880589999999-9619859999798995298898472470
Q gi|254780701|r 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lv-e~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
.|+|+|.|+|.+.- . ...|+|+.+++.++ ++.||.+...+.. ||+|++++|....
T Consensus 163 ~v~deg~G~~~~~~----------------~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~~ 218 (221)
T COG3920 163 TVWDEGGGPPVEAP----------------L-SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSEA 218 (221)
T ss_pred EEEECCCCCCCCCC----------------C-CCCCCHHHHHHHHHHHHCCCEEEEECCC--CEEEEEEEECCCC
T ss_conf 99878989888888----------------7-8998379999999999679727997499--7799999886443
No 54
>PRK03660 anti-sigma F factor; Provisional
Probab=99.21 E-value=2.2e-10 Score=107.85 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 8999988777655688606---7988799999997698599999878997898785442265231577767899988805
Q gi|254780701|r 365 EKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 (495)
Q Consensus 365 ~~~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG 441 (495)
-..+.-++...+.|||+|. .++|.|.|.+.. .++.+.|+|+|+|+||+ +.+..|+||+..+. ..+++|||
T Consensus 37 ~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~-~~~~l~I~V~D~G~Gid--~~~~~~~P~~t~~~----~~~~~GlG 109 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEI-EDEELEITVRDEGKGIE--DVEEARQPLFTTKP----ELERSGMG 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-ECCEEEEEEEECCCCCC--CHHHCCCCCCCCCC----CCCCCCHH
T ss_conf 9999999999999999860367999279999998-09999999997378947--37664388776687----66756405
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 8999999996198599997989952988984724
Q gi|254780701|r 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 442 LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
|+|+|+|+ .+++++|.||+||+++++-...
T Consensus 110 l~li~~Lm----DeVei~s~~g~GTtV~m~k~l~ 139 (146)
T PRK03660 110 FTFMESFM----DEVEVESEPGKGTTIRMKKKLK 139 (146)
T ss_pred HHHHHHHC----CEEEEEECCCCCEEEEEEEEEC
T ss_conf 89999838----8699995599978999999975
No 55
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.18 E-value=3.2e-06 Score=72.19 Aligned_cols=133 Identities=24% Similarity=0.279 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEE--CCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEE
Q ss_conf 310119999999999999999731122100--0367610104798999988777655688606----7988799999997
Q gi|254780701|r 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQ--KIDPSLSSVWADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWT 396 (495)
Q Consensus 323 ~~~v~L~~li~~~~~~~~~~A~~~~~~l~~--~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T----~~gG~V~v~~~~~ 396 (495)
.+-++|.+-++.+..-..-.-.+-+-.+.+ ++++..-.+ .=|..+ +.-|+.|||||- .++|.|.|++..
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~-~iP~fi---lQPLVENAIKHG~~~~~~~g~V~I~V~~- 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV-QIPSFI---LQPLVENAIKHGISQLKDTGRVTISVEK- 488 (557)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-CCCHHH---HHHHHHHHHHHCCCCHHCCCCEEEEEEE-
T ss_conf 15865599999999999899864488447999468777533-686166---7788888887536444208817999998-
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEC
Q ss_conf 6985999998789978987854422652315777678999888058999999996198---5999979899529889847
Q gi|254780701|r 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG---QFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG---~i~v~S~~G~Gt~f~v~LP 473 (495)
.|..++++|+|+|.||+|+ ...|+|+||+.+++=.+.+=| -+.++|.+-.||++++.+|
T Consensus 489 ~d~~l~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp 550 (557)
T COG3275 489 EDADLRIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLP 550 (557)
T ss_pred ECCEEEEEEECCCCCCCCC------------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 0883899994188776997------------------7889871788999999986482103137861677868999944
Q ss_pred HHHCC
Q ss_conf 24707
Q gi|254780701|r 474 NTRVL 478 (495)
Q Consensus 474 ~~~~~ 478 (495)
-.+..
T Consensus 551 ~~~~~ 555 (557)
T COG3275 551 LQRTA 555 (557)
T ss_pred CCCCC
T ss_conf 76556
No 56
>pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases.
Probab=99.18 E-value=9.4e-11 Score=111.09 Aligned_cols=66 Identities=58% Similarity=0.832 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9889999977642013899999999985033687893789999999999999999999999999874220
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag 317 (495)
.|++|++++||||||||++|.|+++++.... .+++++++++.|.+++++|..+|+++||++|+|+|
T Consensus 1 ~k~~f~~~isHelrtPL~~i~~~~~~l~~~~----~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~e~g 66 (66)
T pfam00512 1 AKSEFLANLSHELRTPLTAIRGYLELLLDTE----LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9889999872987184888874889988723----27999999997689999999999999999865489
No 57
>PRK13559 hypothetical protein; Provisional
Probab=99.04 E-value=1.5e-07 Score=83.51 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495)
+...+.-+.|-.++=|+.|.+.+.+-... .+. .++...+.+-...|...=+.++. .-..+.+++
T Consensus 172 ~~~LlrEl~HRVKN~LavV~Si~rlq~R~----~~~---~~~~~~l~~RI~ALa~aH~~Ll~---------~~~~~~v~l 235 (363)
T PRK13559 172 ERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDA---SLYAAAIQERVQALARAHETLLD---------ERGWETVEV 235 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCH---HHHHHHHHHHHHHHHHHHHHHHC---------CCCCCCEEH
T ss_conf 99999998887661999999999965347----984---99999999999999999999865---------777662329
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHC---CCCCCEEEEEEEE-ECCCEEEE
Q ss_conf 999999999999999731122100036761010479-899998877765568860---6798879999999-76985999
Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKF---TAIGGRVHVTVGW-TSGRGQYI 403 (495)
Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~---T~~gG~V~v~~~~-~~~~~~~i 403 (495)
.++++.++..+.+ .+..+.++.++ ..+-.+ ...|--++.-|+.||+|| +.++|.|.|+.+. .+++...+
T Consensus 236 ~~ll~~~l~~~~~----~~~ri~~~gp~--v~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~~~~~~l~l 309 (363)
T PRK13559 236 EELIRAQVAPYAP----RGTRVAFEGPG--IRLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPSREGGGLVL 309 (363)
T ss_pred HHHHHHHHHHCCC----CCCEEEEECCC--EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 9999999985078----88669998897--56868887789999999987088735667899779999998178987999
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 9987899789878544226523157776789998880589999999-96198599997989952988984724
Q gi|254780701|r 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lv-e~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
.+.|+|.|.++. ..+.|+|.-|+++++ ..+||+++++=. ..|+.+++++|..
T Consensus 310 ~W~E~Ggp~v~~-------------------p~~~GFGs~LI~~~v~~qL~G~v~~~~~-~~Gl~~~i~~Plr 362 (363)
T PRK13559 310 DWQEQGGPTPPK-------------------LQKRGFGTVIISAMVESQLKGQIEKDWA-DDGLLARIEIPVR 362 (363)
T ss_pred EEECCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCEEEEEEEEECC
T ss_conf 997789999989-------------------9999856999999989875987999987-9908999999668
No 58
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.97 E-value=8.5e-06 Score=68.60 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHH
Q ss_conf 2013899999999985033687893789999999999999999999999999874220015653101---1999999999
Q gi|254780701|r 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI---SLIDIVRECI 336 (495)
Q Consensus 260 LRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v---~L~~li~~~~ 336 (495)
+-+-|-+..-..|+.......|..- ...-|..+.++|+.-|+++--+|. .+++... -|..-++..+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~ 330 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALL 330 (459)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH
T ss_conf 7777799999999996267799888-----750156678999989999998502------35745554430799999999
Q ss_pred HHHHHHHHHCCCCCEECCCCCCHHCCCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH
Q ss_conf 9999999731122100036761010479--89999887776556886067988799999997698599999878997898
Q gi|254780701|r 337 IMLQLRAQEKNIEIFQKIDPSLSSVWAD--EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 (495)
Q Consensus 337 ~~~~~~A~~~~~~l~~~~~~~~~~v~~D--~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~ 414 (495)
+.|. .+.|+.++...+.- |.-.-+ ...|-+|...=++|-=||+.. .+|.|.... .++.+.+.|+|+|+|.+.
T Consensus 331 ~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~A-trv~ill~~-~~d~vql~vrDnG~GF~~ 404 (459)
T COG4564 331 EDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGA-TRVTILLQQ-MGDMVQLMVRDNGVGFSV 404 (459)
T ss_pred HHHH---HCCCEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECC-CCCCEEEEEECCCCCCCC
T ss_conf 9864---36683799970578-64478278889999999998778860687-179998615-776069998238998561
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 415 e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
+.... +-+|+||-=-|+=++..||+++++|.|- ||..++.||....
T Consensus 405 ~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~~ 450 (459)
T COG4564 405 KEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDAS 450 (459)
T ss_pred HHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECCHHH
T ss_conf 65316----------------7556451009999997486589975698-7279998140466
No 59
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.94 E-value=4.9e-09 Score=96.38 Aligned_cols=65 Identities=57% Similarity=0.853 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999977642013899999999985033687893789999999999999999999999999874220
Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag 317 (495)
+++|++++||||||||++|.+++++++... .+++.+++++.+.++.+++..+|+++|+++|++.|
T Consensus 2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~----~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~ 66 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTE----LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 889999976987081888999988653027----99999999998899999999999999999873699
No 60
>KOG0787 consensus
Probab=98.93 E-value=7.8e-07 Score=77.49 Aligned_cols=214 Identities=19% Similarity=0.253 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHC-CCCCCCCCCHHHHHH
Q ss_conf 64201389999999998503368789378999999999999999999999999987---42200-156531011999999
Q gi|254780701|r 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR---IEAGR-YELSESAISLIDIVR 333 (495)
Q Consensus 258 HELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr---leag~-~~l~~~~v~L~~li~ 333 (495)
|+.--|. -+.|..|.-.... .|..+...+..++..-.+=-.+.-|+|.-+.+-- -+.++ +..-...+++..++.
T Consensus 146 H~dvv~~-lA~Gl~E~~~~~~-dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~ 223 (414)
T KOG0787 146 HNDVVPT-LAQGLIEYREKDG-DPVTEKNIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIK 223 (414)
T ss_pred CCHHHHH-HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 2105899-9988999998528-8406778999999999988999999865552002799987664433179999999999
Q ss_pred HHHHHHHHHHHHCCCCC-EECCCCCCH-HCC-CCHHHHHHHHHHHHHHHHHCC----CCCCE----EEEEEEEECCCEEE
Q ss_conf 99999999997311221-000367610-104-798999988777655688606----79887----99999997698599
Q gi|254780701|r 334 ECIIMLQLRAQEKNIEI-FQKIDPSLS-SVW-ADEKGMRQVILNLLSNAVKFT----AIGGR----VHVTVGWTSGRGQY 402 (495)
Q Consensus 334 ~~~~~~~~~A~~~~~~l-~~~~~~~~~-~v~-~D~~~L~qvl~NLi~NAiK~T----~~gG~----V~v~~~~~~~~~~~ 402 (495)
+..+..+-.+..+=+.- ++.+.+... ... .=|.-|.-++--|.-||.+.| ...+. |.|.+-. .+....
T Consensus 224 ~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~-gdeDl~ 302 (414)
T KOG0787 224 DASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK-GDEDLL 302 (414)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CCCCEE
T ss_conf 9999999999986337970675376667676045618999999999999999999744488889985999863-886358
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 999878997898785442265231577------767899988805899999999619859999798995298898472
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSI------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~------~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
|.|+|.|-|||.++.+++|.=-|-... .....-.|.|-||+|+|.-++.-||++.+.|-.|-||...+.|-+
T Consensus 303 ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787 303 IKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEECC
T ss_conf 997137899680578999866125688987788776766655568737999999948870578520354426899526
No 61
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.81 E-value=1.3e-08 Score=92.66 Aligned_cols=64 Identities=52% Similarity=0.789 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988999997764201389999999998503368789378999999999999999999999999987
Q gi|254780701|r 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 (495)
Q Consensus 247 ~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr 313 (495)
..|.+|++++||||||||++|.|+++++..... .++..+++++.|.++++++..+++++|+++|
T Consensus 2 ~~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~---~~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~ 65 (65)
T cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELL---DDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 359999998729870488888601489885668---8699999999999999999999999998609
No 62
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.5e-06 Score=75.12 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCC-C
Q ss_conf 47989999887776556886067988---7999999976985999998789978987854422652315777-67899-9
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAE-Q 436 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~-~~~~~-~ 436 (495)
.+-.+-|-|++.-|+.|++..|++.| .|.|.+++.+.+...+.|.|+|||||+++.+.+|-++.=++.- ..+.+ +
T Consensus 31 ~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRG 110 (538)
T COG1389 31 DGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRG 110 (538)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 97306899999999853165687608887659999854775589999348999985675789988860232323443255
Q ss_pred CCCCHHHHHHHHHHHCCCE-EEEEEECCC-CEEEEEEECH
Q ss_conf 8880589999999961985-999979899-5298898472
Q gi|254780701|r 437 GVGLGLPIAQSIMANHGGQ-FLIRSKLRE-GVEVIAILPN 474 (495)
Q Consensus 437 GtGLGLaIvk~lve~hgG~-i~v~S~~G~-Gt~f~v~LP~ 474 (495)
=-|||.+=|--..+++-|+ +.|.|..+. ++...+.|-.
T Consensus 111 qqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~i 150 (538)
T COG1389 111 QQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKI 150 (538)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEE
T ss_conf 3242478999998751798669995378886248999995
No 63
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.32 E-value=9e-06 Score=68.39 Aligned_cols=107 Identities=19% Similarity=0.276 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCC------CCCCCCCCCC
Q ss_conf 7989999887776556886067988---799999997698599999878997898785442265------2315777678
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS------FGQGSIAIKS 433 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~------F~r~~~~~~~ 433 (495)
.-.+-|-+.+.-++.|++..+++.| .|.|.++..+++.-.+.|+|||||||+++.+.+|-+ |.+.-. +|
T Consensus 31 ~~~ral~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~~ip~vFGk~L~GSKf~~~rQ--sR 108 (533)
T PRK04184 31 SPARALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPEQIPKVFGKLLYGSKFHRLRQ--SR 108 (533)
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHH--CC
T ss_conf 8531799999999733176688608898659999983785699999448899886788899988850253240211--47
Q ss_pred CCCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCEE-EEEEEC
Q ss_conf 999888058999999996198-5999979899529-889847
Q gi|254780701|r 434 AEQGVGLGLPIAQSIMANHGG-QFLIRSKLREGVE-VIAILP 473 (495)
Q Consensus 434 ~~~GtGLGLaIvk~lve~hgG-~i~v~S~~G~Gt~-f~v~LP 473 (495)
.. -|||-+-|--..++--| .+.|.|..+.+.. +.+.|-
T Consensus 109 Gq--qGiGis~avlysQlTTGkP~~V~S~~~~~~~a~~~~l~ 148 (533)
T PRK04184 109 GQ--QGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYEFELK 148 (533)
T ss_pred CC--CCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEE
T ss_conf 75--35247888777631268865999647998526999999
No 64
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.29 E-value=2.1e-05 Score=65.16 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99988777655688606---798879999999769859999987899789878544226523157776789998880589
Q gi|254780701|r 367 GMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLa 443 (495)
.++-++.--+.|||+|. +++|.|.|.+... ++.+.|.|+|+|+|++++..+.-..|+...+.-. ..+..|+||.
T Consensus 42 di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~-~~~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~l~--~~~~gGlGl~ 118 (158)
T PRK04069 42 DLKIAVSEACTNAVQHAYKEEEVGEINIRFEIY-EDRLEIVVADNGDSFDYETTKSKIGPYDPSEPID--DLREGGLGLF 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCHH--HCCCCCCHHH
T ss_conf 899999999999999751569994799999995-9999999999174879567432458888888611--1367874099
Q ss_pred HHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 999999961985999979899529889847
Q gi|254780701|r 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 444 Ivk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
+.|++++ +++++| +.||+.+++-=
T Consensus 119 lI~~lmD----eV~~~~--~~Gt~v~m~K~ 142 (158)
T PRK04069 119 LIETLMD----DVTVYK--DSGVTVSMTKY 142 (158)
T ss_pred HHHHHCC----EEEEEE--CCCEEEEEEEE
T ss_conf 9997525----589990--89829999999
No 65
>KOG0519 consensus
Probab=98.04 E-value=8.1e-06 Score=68.76 Aligned_cols=225 Identities=20% Similarity=0.205 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999889999977642013899999999985033687893789999999999999999999999999
Q gi|254780701|r 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 (495)
Q Consensus 232 ~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdl 311 (495)
+..+..+++.+..+...+..++..++|..|+|.+.+.+....+.++..- .+...-.++...++...+..+++.-.|.
T Consensus 369 ~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~---~~~~~~~i~~~~~~~~~~~~~~q~~~~~ 445 (786)
T KOG0519 369 NDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVL---SPDSGLEIQTVMRSSNVFTSLIQADPDI 445 (786)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEE---CCCCCEEEEECCCCHHHHHHHHCCCHHC
T ss_conf 7899754577653515566788874133124220421223576652022---3666406850233046555451466100
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC-HHCCCCHHHHHHHHHHHHHHHHH--CCCCCCE
Q ss_conf 87422001565310119999999999999999731122100036761-01047989999887776556886--0679887
Q gi|254780701|r 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK--FTAIGGR 388 (495)
Q Consensus 312 srleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~-~~v~~D~~~L~qvl~NLi~NAiK--~T~~gG~ 388 (495)
++...|.-.-......|..++.............+...+.+....+. ..+.+|+.++.|++.+..+|+.+ +|..|..
T Consensus 446 ~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 525 (786)
T KOG0519 446 TRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGRE 525 (786)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
T ss_conf 34568764533222328899886743211003475222331235688731011034454455543012223200335762
Q ss_pred --EEEEEEEECC--------------------C-EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf --9999999769--------------------8-5999998789978987854422652315777678999888058999
Q gi|254780701|r 389 --VHVTVGWTSG--------------------R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 (495)
Q Consensus 389 --V~v~~~~~~~--------------------~-~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIv 445 (495)
+.+....... . ...+.++|+..|+...++...|..|-+......+...+.++.++.|
T Consensus 526 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (786)
T KOG0519 526 QIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALC 605 (786)
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 06999801266541114431056664366610024422331030346777720456554003454200245554201236
Q ss_pred HHHHHHCCCEEEEE
Q ss_conf 99999619859999
Q gi|254780701|r 446 QSIMANHGGQFLIR 459 (495)
Q Consensus 446 k~lve~hgG~i~v~ 459 (495)
+...+.+.|.+++.
T Consensus 606 ~~~~~~~~~~~~~~ 619 (786)
T KOG0519 606 PENSQLMEGNIGLV 619 (786)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 56777753143355
No 66
>TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=98.04 E-value=2e-05 Score=65.41 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=75.5
Q ss_pred CCCH-HHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECC-------CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 4798-9999887776556886067988---79999999769-------85999998789978987854422652315777
Q gi|254780701|r 362 WADE-KGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 (495)
Q Consensus 362 ~~D~-~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~-------~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~ 430 (495)
++.+ +-|.+|+.-||.|++..+++-| .|.|+.++-++ ++=.|.|.|||||||.+.++++|-...=++.-
T Consensus 22 y~gkiRsL~~~ihElVtNSLDAcEEAGILP~I~v~I~~~g~seGrGGr~HY~v~VEDNGPGIP~~~IPkVFGKmLaGSK~ 101 (662)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKSEGRGGRDHYKVVVEDNGPGIPEEYIPKVFGKMLAGSKF 101 (662)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCEE
T ss_conf 73606889999999971424676643799840589898527778999962079984078899700013132021114400
Q ss_pred -CCCCCCC-CCCHHHHHHHHHHHCCC-EEEEEEECCC-CEEE
Q ss_conf -6789998-88058999999996198-5999979899-5298
Q gi|254780701|r 431 -IKSAEQG-VGLGLPIAQSIMANHGG-QFLIRSKLRE-GVEV 468 (495)
Q Consensus 431 -~~~~~~G-tGLGLaIvk~lve~hgG-~i~v~S~~G~-Gt~f 468 (495)
..+.+.| =|||-+=|==..++=-| .+.|=|.-+. |..-
T Consensus 102 h~~iQSRGqQGiG~sgavL~~Q~TTGKP~~VIs~T~~nGe~~ 143 (662)
T TIGR01052 102 HRIIQSRGQQGIGISGAVLYAQITTGKPVKVISSTGENGEIY 143 (662)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEE
T ss_conf 033206785156799999987614798458880568675615
No 67
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.83 E-value=0.00047 Score=53.67 Aligned_cols=92 Identities=26% Similarity=0.310 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 79899998877765568860679----88799999997698599999878997898785442265231577767899988
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAI----GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~----gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~Gt 438 (495)
-|-.+++-++.-++.||+||..+ .|.|.|.+.. .++...+.|+|+|+||++- +..+++.+ .. ......-
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~-~~~~~~i~i~D~G~~~~~~--~~~~~~~~---~~-~~~~~~~ 108 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL-DDGKLEIRIWDQGPGIEDL--EESLGPGD---TT-AEGLQEG 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCCH--HHHCCCCC---CC-CCCCCCC
T ss_conf 8999999999999989999763038998659999997-0993999999579898788--88538888---88-8753247
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 805899999999619859999798995
Q gi|254780701|r 439 GLGLPIAQSIMANHGGQFLIRSKLREG 465 (495)
Q Consensus 439 GLGLaIvk~lve~hgG~i~v~S~~G~G 465 (495)
|+||.|.+++++ ++.++++++.+
T Consensus 109 G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 109 GLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred CCCHHHHHHHHE----EEEEEEECCCC
T ss_conf 313788862110----79999606985
No 68
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.62 E-value=0.00021 Score=56.60 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 101199999999999999997311221
Q gi|254780701|r 324 SAISLIDIVRECIIMLQLRAQEKNIEI 350 (495)
Q Consensus 324 ~~v~L~~li~~~~~~~~~~A~~~~~~l 350 (495)
..++|...-.++.......-++-|..+
T Consensus 479 ~~ieLs~~e~~~l~~~~~~l~~lGf~i 505 (612)
T PRK00095 479 LVLELSEDEADRLEEHKELLARLGLEL 505 (612)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 043169999999999999999679599
No 69
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.52 E-value=0.00032 Score=55.08 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 99988777655688606798879999999769859999987899789878544226523
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~ 425 (495)
+.-.|+.=||.|++-.- + ..|.|.+. .+|...|+|+|+|.||++||.+.+.++|+
T Consensus 22 ~p~~vVKELvENSLDAG-A-t~I~v~~~--~gG~~~I~V~DNG~Gi~~~d~~~~~~~ha 76 (367)
T TIGR00585 22 RPASVVKELVENSLDAG-A-TKIEVEIE--EGGLKLIEVSDNGSGIDKEDLELACERHA 76 (367)
T ss_pred HHHHHHHHHHHHHHCCC-C-CEEEEEEE--ECCEEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 27999999887312148-8-58999996--26535899997785677777998612357
No 70
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.36 E-value=0.00076 Score=51.86 Aligned_cols=95 Identities=16% Similarity=0.278 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 999988777655688606---79887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r 366 KGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 (495)
Q Consensus 366 ~~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL 442 (495)
.-++.++..=+.|||=|- ..+|.|.|.+.. .+..+.++|.|.|+||.. ++.--+|.|-.... =+=+|.|-
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~-~d~~~~~~v~D~G~GI~~--lE~A~~PLyTskPe----LERSGMGF 110 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATI-EDDEVSITVRDEGIGIEN--LEEAREPLYTSKPE----LERSGMGF 110 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEE-ECCEEEEEEEECCCCHHH--HHHHCCCCCCCCCC----CCCCCCCE
T ss_conf 555433322321205314563799778999996-054899998646757233--78532664579987----22067860
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999999619859999798995298898
Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 (495)
Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~ 471 (495)
.|--.. =-.+.|+|++++||+..++
T Consensus 111 TvME~F----MD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 111 TVMESF----MDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred EEECCC----CCCEEEEECCCCCCEEEEE
T ss_conf 121112----4512686238998468875
No 71
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0018 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
.|+..+.+.+.+-|.|+++-.
T Consensus 313 ~~~~~i~~~I~~~I~~~L~~~ 333 (638)
T COG0323 313 SDERLVHDLIYEAIKEALAQQ 333 (638)
T ss_pred CCHHHHHHHHHHHHHHHHHHC
T ss_conf 598999999999999999744
No 72
>pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function.
Probab=96.59 E-value=0.096 Score=33.85 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985033687893789999999999999999999999999874220015653101199999999999999997
Q gi|254780701|r 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 (495)
Q Consensus 265 ~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~ 344 (495)
-+|...+|+|.++.. +.-++.++-|.+|+.... .-|.|-|+-=|... .-+.++..++-.-+...+ +
T Consensus 2 GAI~NGLELL~~~~~-----~~~~~~m~LI~~Sa~~A~----aRl~F~RlAfGaag-~~~~i~~~e~~~~~~~~~----~ 67 (181)
T pfam10090 2 GAIVNGLELLDDEGD-----PEMGPEMALIRESARNAS----ARLRFFRLAFGAAG-AGQQIDLAEAKSVLEGYL----A 67 (181)
T ss_pred CCHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHH----HHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHH----H
T ss_conf 312555888707898-----641689999999999999----99999999808468-888569999999999998----3
Q ss_pred HCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCC--CHHHHHHHCC
Q ss_conf 31122100036761010479899998877765568860679887999999976985999998789978--9878544226
Q gi|254780701|r 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI--AEGEIPTVLT 422 (495)
Q Consensus 345 ~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI--~~e~~~~iF~ 422 (495)
.+.+++....++. .+ |+..-|++.|++-=+.-..|.||.|.|.+. .+++ ..+.|+=+|+.+ +++-...+=.
T Consensus 68 ~~r~~l~W~~~~~--~~---~k~~vklllnl~l~~~~AlprGG~i~V~~~-~~~~-~~~~v~a~g~r~~~~~~~~~~L~g 140 (181)
T pfam10090 68 GGRITLDWQLERD--LL---PKPEVKLLLNLLLIAEDALPRGGEIDVGEG-SDGA-GGWRVTAEGERLRIDPDLWAALAG 140 (181)
T ss_pred CCCEEEEECCCCC--CC---CHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-CCCC-CEEEEEEEECCCCCCHHHHHHHCC
T ss_conf 8853898358745--48---879999999999999975477877899984-1789-759999970467899789998569
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 523157776789998880589999999961985999979
Q gi|254780701|r 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 (495)
Q Consensus 423 ~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~ 461 (495)
.- ....-...-.=-+....+++..|+++.++..
T Consensus 141 ~~------~~~~l~~~~VQ~~~l~~la~~~G~~l~~~~~ 173 (181)
T pfam10090 141 GA------PEEELDARNVQFYLLPLLAREAGGTLSYEIT 173 (181)
T ss_pred CC------CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99------8778998764999999999986991178864
No 73
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.031 Score=38.04 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC----------CCCCCCC-CCCCCCC
Q ss_conf 8877765568860679887999999976985999998789978987854422652----------3157776-7899988
Q gi|254780701|r 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF----------GQGSIAI-KSAEQGV 438 (495)
Q Consensus 370 qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F----------~r~~~~~-~~~~~Gt 438 (495)
-+...||.||+||... |.|.|.++.. +....+.|++--++=...+-+++...- .|.+... .....|+
T Consensus 66 Yl~NELiENAVKfra~-geIvieasl~-s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRiEanA~~~d~~gS 143 (184)
T COG5381 66 YLANELIENAVKFRAT-GEIVIEASLY-SHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERIEANALESDCEGS 143 (184)
T ss_pred HHHHHHHHHHHCCCCC-CCEEEEEEEC-CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9899999866601579-8589999831-4068887303578851888999999986079299999999860358887656
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 8058999999996198599997989952
Q gi|254780701|r 439 GLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 439 GLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
||||-- ++--.|.++.-.=.|+.|+
T Consensus 144 glGLLT---lmsDYgA~faWiF~~~~~s 168 (184)
T COG5381 144 GLGLLT---LMSDYGAQFAWIFVPVSGS 168 (184)
T ss_pred CCCCEE---HHHHHCCEEEEEEECCCCC
T ss_conf 641000---1234233268998356777
No 74
>PRK05218 heat shock protein 90; Provisional
Probab=95.18 E-value=0.048 Score=36.41 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 87776556886067988799999997698599999878997898785442265231
Q gi|254780701|r 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 371 vl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
-|...+..+++= ..-.|.++-+.. +.-+ +-|.+.+ |+.. +++++.....|
T Consensus 500 ~L~~~~k~~L~~--~V~~V~vs~rl~-dsPa-~lv~~e~-~~s~-~Me~im~~~~~ 549 (612)
T PRK05218 500 PLLERFKEALGD--KVKDVRLSHRLT-DSPA-CLVADEG-DMSR-QMERLLKAAGQ 549 (612)
T ss_pred HHHHHHHHHHCC--CCCEEEEECCCC-CCCE-EEEECCC-CHHH-HHHHHHHHCCC
T ss_conf 999999998388--544899624788-9986-9994776-5579-99999985276
No 75
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.087 Score=34.23 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=14.2
Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf 7999999976985999998789978987854422652315
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~ 427 (495)
.|+++-+.. +.-.++..... ++ ..+++++++.-.|-
T Consensus 521 ~Vr~s~rl~-dspa~l~~~~~--~~-~~~m~r~l~~~~~~ 556 (623)
T COG0326 521 DVRLSHRLT-DSPACLTTDGA--DL-STQMERLLKAQGQE 556 (623)
T ss_pred EEEEECCCC-CCCCEEECCCC--CH-HHHHHHHHHHCCCC
T ss_conf 157303467-89634554766--63-59999999855266
No 76
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=0.54 Score=27.42 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 99997764201389999999998503368789378999999999999999999999999987422001565310119999
Q gi|254780701|r 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 (495)
Q Consensus 252 FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~l 331 (495)
+.+-+-||+=.|..+|..-.|+|.+.. .+ .+..+-|..|++... +.|.++|+-=|.-.-.-+.+|-.+.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~---ad----dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea 86 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGG---AD----DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA 86 (214)
T ss_pred HHHHHHHHCCCCHHHHHCHHHHHCCCC---CC----HHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 999887540481777603256642689---64----789999999765178----8877889872555543335660669
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCC
Q ss_conf 99999999999973112210003676101047989999887776556886067988799999997698599999878997
Q gi|254780701|r 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 (495)
Q Consensus 332 i~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~G 411 (495)
= .+...|. +..| -++..+.++. .+--+. -..+.||.-=|--.-|.||.+.++++- .+...+|++.-.|+=
T Consensus 87 e-k~A~~~~--a~ek-pe~~W~g~r~--~~~Kn~---vkllLNl~lia~~aiPrGG~~~vtle~-~e~d~rfsi~akG~m 156 (214)
T COG5385 87 E-KAAQDFF--ANEK-PELTWNGPRA--ILPKNR---VKLLLNLFLIAYGAIPRGGSLVVTLEN-PETDARFSIIAKGRM 156 (214)
T ss_pred H-HHHHHHH--HCCC-CCCCCCCCHH--HCCCCH---HHHHHHHHHHHCCCCCCCCEEEEEEEC-CCCCCEEEEEECCCC
T ss_conf 9-9999998--6238-7123558742--247505---899999999970557889826899536-776743899832753
Q ss_pred --CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf --89878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 412 --IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 412 --I~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
.||+.++-+ .++.. ...-.++-.-=+-.--|++.-|++|.+++. ++--+|+-+.|
T Consensus 157 ~Rvppk~lel~-----~G~~~-eE~vdahsVQpyYt~lLa~eAgm~I~v~~~-~e~iv~~A~v~ 213 (214)
T COG5385 157 MRVPPKFLELH-----SGEPP-EEAVDAHSVQPYYTLLLAEEAGMTISVHAT-AERIVFTAWVV 213 (214)
T ss_pred CCCCHHHHHHH-----CCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CCEEEEEEECC
T ss_conf 44798998650-----59984-224787530399999999970986899963-64379997514
No 77
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=94.19 E-value=0.065 Score=35.29 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC---CC-CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 47989999887776556886067---98-879999999769859999987899789878544226523157776789998
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTA---IG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~---~g-G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~G 437 (495)
|-|=.=|+-.+.-=+.|||||-- ++ |.|.|+-..-+| ...|-|+|+|--..=|....=.-||-..++-..=++|
T Consensus 38 Yd~IED~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyED-klev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~eG- 115 (161)
T TIGR01924 38 YDDIEDLKIAVSEACTNAVKHAYKEEENVGEISIEFEIYED-KLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLREG- 115 (161)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEE-EEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCC-
T ss_conf 65752067766555303311223089836789988878875-7899982078641110025325897957875432017-
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf 88058999999996198599997989952988984724707
Q gi|254780701|r 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 438 tGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~ 478 (495)
||||.+.-.|++ ++++....|.--..|=.|-..+|-
T Consensus 116 -GLGLFLietLMD----~V~~~~~sGV~v~MTKYl~~~~V~ 151 (161)
T TIGR01924 116 -GLGLFLIETLMD----EVKVYEDSGVTVAMTKYLNKEQVD 151 (161)
T ss_pred -CCHHHHHHCCCC----EEEEEECCCEEEEEEEECCCCEEC
T ss_conf -713664510376----169983286089886422642301
No 78
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.17 E-value=0.013 Score=41.19 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9899998877765
Q gi|254780701|r 364 DEKGMRQVILNLL 376 (495)
Q Consensus 364 D~~~L~qvl~NLi 376 (495)
|..-+..++.++-
T Consensus 553 ~d~e~~~~l~~~~ 565 (725)
T PRK05644 553 DDRELDEYLIELA 565 (725)
T ss_pred CHHHHHHHHHHHC
T ss_conf 9999999999732
No 79
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.01 E-value=0.14 Score=32.40 Aligned_cols=14 Identities=14% Similarity=-0.142 Sum_probs=6.5
Q ss_pred HHHHHHHHHCCCEE
Q ss_conf 99999999619859
Q gi|254780701|r 443 PIAQSIMANHGGQF 456 (495)
Q Consensus 443 aIvk~lve~hgG~i 456 (495)
..+++|-++|.-.+
T Consensus 655 ~fa~Rin~Ll~~~L 668 (701)
T PTZ00272 655 GYAERINRMIKLGL 668 (701)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999427
No 80
>KOG1979 consensus
Probab=93.99 E-value=0.08 Score=34.52 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899998877765568860
Q gi|254780701|r 365 EKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 365 ~~~L~qvl~NLi~NAiK~ 382 (495)
...+-|++.+=-+|=-|+
T Consensus 502 ~ElfYQi~i~dF~Nfg~~ 519 (694)
T KOG1979 502 KELFYQILITDFGNFGKI 519 (694)
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999876055526
No 81
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=93.51 E-value=0.017 Score=40.41 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCC-----CCHHHHHHHCCCCCCCCCCCC---CC
Q ss_conf 7989999887776556886067988799999997698599999878997-----898785442265231577767---89
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG-----IAEGEIPTVLTSFGQGSIAIK---SA 434 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~G-----I~~e~~~~iF~~F~r~~~~~~---~~ 434 (495)
.|...++-.|+|+...=.+--=+.|.|.+... .- +.|. .|-+ .++++.+.+.+.+.+.....+ .+
T Consensus 498 ~DGsHI~~Llltff~~~~p~Li~~G~vy~~~t----Pl--~kv~-~gk~~~~y~~~e~e~~~~~~~~~~~~~~~k~~i~r 570 (633)
T PRK05559 498 VDGAHIATLLLTFFYRHFPPLVEAGHVYIALP----PL--YRVD-VGKGKTFYALDEEEKEELLKKLGKGGKKGKVEIQR 570 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC----CE--EEEE-ECCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 97688999999999987699886595899739----88--9999-38943698588999999999864115778703687
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 9988805899999999
Q gi|254780701|r 435 EQGVGLGLPIAQSIMA 450 (495)
Q Consensus 435 ~~GtGLGLaIvk~lve 450 (495)
++ |||=+-..++-|
T Consensus 571 yK--GLGem~~~ql~e 584 (633)
T PRK05559 571 FK--GLGEMNPDQLWE 584 (633)
T ss_pred EE--ECCCCCHHHHHH
T ss_conf 64--067799899998
No 82
>PTZ00130 heat shock protein 90; Provisional
Probab=93.05 E-value=0.26 Score=30.16 Aligned_cols=28 Identities=18% Similarity=0.507 Sum_probs=15.6
Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHH
Q ss_conf 7999999976985999998789978987854
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~ 418 (495)
.|.|.+- .+. -.++|+|||+|+..+++-
T Consensus 133 ~I~I~~D--ke~-ktLtI~DtGIGMTk~eLi 160 (824)
T PTZ00130 133 EIRISAN--KEK-NILSITDTGIGMTKEDLI 160 (824)
T ss_pred EEEEEEC--CCC-CEEEEEECCCCCCHHHHH
T ss_conf 6998975--889-989998448888899999
No 83
>KOG1978 consensus
Probab=92.75 E-value=0.14 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=8.7
Q ss_pred HHHHCCCEEEEEEECCCCEEE
Q ss_conf 999619859999798995298
Q gi|254780701|r 448 IMANHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 448 lve~hgG~i~v~S~~G~Gt~f 468 (495)
+.+.-|=.+.+.-..+-|+.|
T Consensus 558 ~f~knGF~~~~~~n~~~~~~~ 578 (672)
T KOG1978 558 LFEKNGFKVKIDENAPDGKRV 578 (672)
T ss_pred HHHHCCCEEEECCCCCCCCEE
T ss_conf 998669568515888633001
No 84
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=92.10 E-value=0.026 Score=38.66 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 798999988777655688606798879999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.|...++-.|+|+..-=..--=+.|.|.+.
T Consensus 464 vDG~HI~~LLltff~r~~p~Li~~G~vy~a 493 (594)
T smart00433 464 VDGSHIKGLLLTFFYRYMPPLIEAGFVYIA 493 (594)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 875789999999999876998867969998
No 85
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IPR005740 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=92.02 E-value=0.29 Score=29.78 Aligned_cols=95 Identities=26% Similarity=0.440 Sum_probs=66.3
Q ss_pred CCCCHHC-CCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHC--
Q ss_conf 6761010-4798999988777655688606--7988799999997698599999878997898785--------4422--
Q gi|254780701|r 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFT--AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVL-- 421 (495)
Q Consensus 355 ~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T--~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF-- 421 (495)
.|++ .+ -.|..=|..++.-+|+|+|.=- ..+..|.|... .++ .|+|.|+|.|||-+-. +.||
T Consensus 28 RPGM-YIGSTds~GLHHl~wEIvdNsvDEvl~g~a~~I~V~l~--~dn--si~V~D~GRG~P~~~h~~~~isT~e~vlT~ 102 (655)
T TIGR01058 28 RPGM-YIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KDN--SISVQDDGRGIPTGIHKQGKISTVETVLTV 102 (655)
T ss_pred CCCC-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCC--EEEEEECCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf 8984-12256878505567878844688898226974799982--787--078875785376012216898851004544
Q ss_pred ----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf ----65231577767899988805899999999619859
Q gi|254780701|r 422 ----TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 (495)
Q Consensus 422 ----~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i 456 (495)
-+|-|. +++...|=+|.|=|+|-.|-+-+--+|
T Consensus 103 LHAGGKFd~~--~YKtaGGLHGVGaSVVNALS~wL~v~v 139 (655)
T TIGR01058 103 LHAGGKFDQG--GYKTAGGLHGVGASVVNALSSWLEVEV 139 (655)
T ss_pred EECCCCCCCC--CEEECCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 3077303786--501057322303677640226338999
No 86
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=92.00 E-value=0.029 Score=38.37 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 764201389999
Q gi|254780701|r 257 SHELRTPLNAIL 268 (495)
Q Consensus 257 SHELRTPL~aI~ 268 (495)
+-|+++=.++|.
T Consensus 627 N~EI~~LItAlG 638 (941)
T PTZ00109 627 NSELKSLITAIG 638 (941)
T ss_pred CHHHHHHHHHHC
T ss_conf 499999999858
No 87
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=89.58 E-value=0.39 Score=28.69 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999776420138999999999850336
Q gi|254780701|r 252 FLASMSHELRTPLNAILGFSEVIELETM 279 (495)
Q Consensus 252 FlA~~SHELRTPL~aI~g~~elL~~~~~ 279 (495)
|+..++-+.-.+...+.-|-+++....+
T Consensus 609 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (818)
T TIGR01059 609 LINRLERKAIRFSEELLIYQDLLEKELL 636 (818)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCHHHH
T ss_conf 7999987404355788875553022220
No 88
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=88.86 E-value=1 Score=24.98 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=46.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH-----HHHH--HCCCCCCCCCC
Q ss_conf 10479899998877765568860679887999999976985999998789978987-----8544--22652315777
Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG-----EIPT--VLTSFGQGSIA 430 (495)
Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e-----~~~~--iF~~F~r~~~~ 430 (495)
.+.|||.|.++|-.|++.|+.+.+..=+-...+-.. +|. .|+|.-||+|.|.- ++-. =.+.|-|++..
T Consensus 18 l~~GDP~Ra~~iA~~~l~~~~~v~~~R~~~~yTG~y--~G~-~VtV~stGmG~ps~~I~~~EL~~~~g~k~iIRiGT~ 92 (233)
T PRK13374 18 LMPGDPLRAKYIAETYLEDVVQVTNVRNMLGFTGTY--KGK-KISVMGHGMGIPSMVIYSHELIATFGVKNIIRVGSC 92 (233)
T ss_pred EECCCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEE--CCE-EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 946898999999987600859952014348899999--999-989985478843012129999987088279995044
No 89
>KOG1977 consensus
Probab=88.38 E-value=1.2 Score=24.54 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999987422
Q gi|254780701|r 301 LLNLINEILDLSRIEA 316 (495)
Q Consensus 301 L~~Li~~lLdlsrlea 316 (495)
...+-.|+|.=+|+.+
T Consensus 471 ~~~~~~d~lkd~~i~n 486 (1142)
T KOG1977 471 VNGMAADILKDNRIQN 486 (1142)
T ss_pred CCCCHHHHHCCHHHHC
T ss_conf 5530465650802221
No 90
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=87.68 E-value=0.059 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCC---CCCEEEEE
Q ss_conf 989999887776556886067---98879999
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTA---IGGRVHVT 392 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~---~gG~V~v~ 392 (495)
|..-++-.|+++.- +|.| +.|.|.+.
T Consensus 502 DGaHIrtLLlTfFy---r~m~~LIe~G~vyiA 530 (635)
T COG0187 502 DGAHIRTLLLTFFY---RYMPPLIENGHVYIA 530 (635)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHCCCEEEE
T ss_conf 72889999999999---974999976948997
No 91
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=86.58 E-value=2.2 Score=22.20 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=45.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH-----HHHHH--CCCCCCCCCC
Q ss_conf 10479899998877765568860679887999999976985999998789978987-----85442--2652315777
Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG-----EIPTV--LTSFGQGSIA 430 (495)
Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e-----~~~~i--F~~F~r~~~~ 430 (495)
-+.|||.|-++|-.++++|+-+.+..=|-...+-.. +| ..|+|.=||+|.|.- |+-+. -+.|-|.+.+
T Consensus 17 l~~GDP~Ra~~ia~~~l~~~~~v~~~R~~~tyTG~y--~G-~~itV~stGmG~ps~~I~~~EL~~~~g~~~iIRiGT~ 91 (235)
T PRK05819 17 LMPGDPLRAKYIAETFLEDVVCVNEVRGMLGFTGTY--KG-KRVSVMGHGMGIPSISIYANELITDYGVKKLIRVGSC 91 (235)
T ss_pred EECCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEE--CC-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 937897999999998721768842105469999999--99-9999994378871099999999986599789993776
No 92
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=86.19 E-value=1.1 Score=24.89 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHH---------CCCCCCCCC---C
Q ss_conf 7989999887776556886067988799999997698599999878997898785442---------265231577---7
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV---------LTSFGQGSI---A 430 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~i---------F~~F~r~~~---~ 430 (495)
.|..+........|+||+.=.-+|=.-.|.+....|. -|+|.|+|.|||=+..|.- .....-|+. .
T Consensus 29 tD~~~~~HL~~EV~DN~~DEA~AGfA~~i~v~lH~D~--Si~v~D~GRG~PvD~HP~~P~~sa~EvILt~LHaG~KFSN~ 106 (647)
T TIGR01055 29 TDTTRPNHLVQEVIDNSVDEALAGFASKIEVILHQDQ--SIEVIDNGRGMPVDIHPKEPGVSAVEVILTKLHAGGKFSNK 106 (647)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 6565301345554433355554065307889982896--17998888303442788888886235564300578521144
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHCCCEE
Q ss_conf 6789998-8805899999999619859
Q gi|254780701|r 431 IKSAEQG-VGLGLPIAQSIMANHGGQF 456 (495)
Q Consensus 431 ~~~~~~G-tGLGLaIvk~lve~hgG~i 456 (495)
.-.-.|| +|.|.++|..|-+...-.+
T Consensus 107 ~Y~~sGGLHGVGISVVNALS~~~~i~V 133 (647)
T TIGR01055 107 NYEFSGGLHGVGISVVNALSKRVKIKV 133 (647)
T ss_pred CCCCCCCEECCHHHHEEECCCEEEEEE
T ss_conf 401368600214320220132367899
No 93
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=83.27 E-value=1.3 Score=24.18 Aligned_cols=52 Identities=25% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH
Q ss_conf 0479899998877765568860679887999999976985999998789978987
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e 415 (495)
+-+||.|-+-+--|++.|++++++--|.---+- +-.| ..++|.-+|.|||.-
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vnevR~mlgfTG--tYKG-k~iSimg~GmGipS~ 70 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNEVRGMLGFTG--TYKG-KKISVMGHGMGIPSI 70 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EECC-CEEEEEEECCCCCCH
T ss_conf 689973378999998742302232100010341--3438-478998734887508
No 94
>KOG0020 consensus
Probab=81.02 E-value=3.5 Score=20.44 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999776420138999
Q gi|254780701|r 251 RFLASMSHELRTPLNAI 267 (495)
Q Consensus 251 ~FlA~~SHELRTPL~aI 267 (495)
.|.-+.|.|---||+-|
T Consensus 354 ~FYkSlsKds~dPma~~ 370 (785)
T KOG0020 354 KFYKSLSKDSTDPMAYI 370 (785)
T ss_pred HHHHHHHCCCCCCCCEE
T ss_conf 99986402666864002
No 95
>KOG0019 consensus
Probab=80.55 E-value=3.5 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=10.1
Q ss_pred EEEEEEEEECCCEEEEEEEECC
Q ss_conf 7999999976985999998789
Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNG 409 (495)
Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG 409 (495)
.|.|+-++.... ++|.+.+-|
T Consensus 535 kV~vs~RlvssP-c~I~t~~~g 555 (656)
T KOG0019 535 KVTVNNRLVSHP-AMITTLEYG 555 (656)
T ss_pred EEEECCCCCCCC-EEEEECCCC
T ss_conf 999537546885-289850001
No 96
>KOG0355 consensus
Probab=78.18 E-value=3 Score=21.02 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHH-------HCCCCC-CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 798999988777655688-------606798-879999999769859999987899789878544226523157776789
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAV-------KFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAi-------K~T~~g-G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~ 434 (495)
-.+.-|.+-+.||-.|-+ ||.... ..++.-.-...++.+..---|.|--|+|+..+-+--.- -+ .
T Consensus 709 hge~sl~~ti~~l~q~~~gkdaa~~ryi~t~l~~~tr~~f~~~dd~ll~~~~~~~~~vep~y~pi~p~vl---vn----g 781 (842)
T KOG0355 709 HGEQSLMSTIVNLAQDFVGKDAASARYIFTKLSPLTRLLFPPADDLLLKYLNEDGQRVEPEYCPIIPMVL---VN----G 781 (842)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEE---EE----C
T ss_conf 3427699999988875058840236789885273654027888326766522578671752244146888---50----5
Q ss_pred CCCCCCHH----------HHHHHHHHHCCCE
Q ss_conf 99888058----------9999999961985
Q gi|254780701|r 435 EQGVGLGL----------PIAQSIMANHGGQ 455 (495)
Q Consensus 435 ~~GtGLGL----------aIvk~lve~hgG~ 455 (495)
..|.|=|- -|++.+=.++.|+
T Consensus 782 aegiGtGws~~i~n~n~~~iv~~~r~~~~~~ 812 (842)
T KOG0355 782 AEGIGTGWSTFIPNYNPREIVKNIRRLINGE 812 (842)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6545567656688889899999998863699
No 97
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=77.95 E-value=3.3 Score=20.68 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred CCHHHHHHHCCCCCCCCC------CCCCCCCCCCC----HHHHHHHHHHHCCCEEEEE
Q ss_conf 898785442265231577------76789998880----5899999999619859999
Q gi|254780701|r 412 IAEGEIPTVLTSFGQGSI------AIKSAEQGVGL----GLPIAQSIMANHGGQFLIR 459 (495)
Q Consensus 412 I~~e~~~~iF~~F~r~~~------~~~~~~~GtGL----GLaIvk~lve~hgG~i~v~ 459 (495)
|.+.++..||+||..++. +.+-+.+|-|- -+.-+|.=.+.|+|+++|-
T Consensus 247 itE~~L~~iFepFG~ie~vqL~~D~~tG~SkGyGFiqF~~~~~A~~Al~~lNGk~e~A 304 (531)
T TIGR01622 247 ITEQELRQIFEPFGEIELVQLQKDPETGRSKGYGFIQFRDAEEAKEALEKLNGKFELA 304 (531)
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEC
T ss_conf 3578874242104861245553278988132540055111677899999848805525
No 98
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=75.80 E-value=5.4 Score=18.84 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=47.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH-----HHHHHHC-CCCCCCCCC
Q ss_conf 1047989999887776556886067988799999997698599999878997898-----7854422-652315777
Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE-----GEIPTVL-TSFGQGSIA 430 (495)
Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~-----e~~~~iF-~~F~r~~~~ 430 (495)
.+.|||.|..++-. |++|+.+-... -.-.+-.+.- ++. -|.|.-||+|-|. |++.++- +-|-|++.+
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~-Ref~~~~g~~-~g~-~v~v~StGIGgPSaaIAvEEL~~lGa~tfiRVGT~ 93 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASN-REFRTYTGTY-NGK-PVTVCSTGIGGPSAAIAVEELARLGAKTFIRVGTT 93 (248)
T ss_pred EECCCHHHHHHHHH-HHCCCHHHHHC-CCEEEEEEEE-CCE-EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 81498789999999-85260111313-3158887687-581-88998348897109999999996588179996056
No 99
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=74.96 E-value=5.7 Score=18.67 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCC
Q ss_conf 7655688606798879999999769859999987899789-8785442265231
Q gi|254780701|r 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA-EGEIPTVLTSFGQ 426 (495)
Q Consensus 374 NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~-~e~~~~iF~~F~r 426 (495)
-+++|.|-.|| |.+++.+. .+++..++..-|-..|.. +|..+.|.++|.+
T Consensus 110 t~lansITLTP--GTltvdv~-~d~~~lyVH~idv~~~~~~~e~~~~I~~~FEk 160 (167)
T PRK08383 110 TILSNSITLTP--GTLTIEAC-PEEKALYVHWINIPEGLEWPESSEPVSGPFEK 160 (167)
T ss_pred HHHHHHHCCCC--CEEEEEEC-CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99986331689--77999974-99987999998789877704568898677999
No 100
>pfam01899 MNHE Na+/H+ ion antiporter subunit. Subunit of a Na+/H+ Prokaryotic antiporter complex.
Probab=74.40 E-value=5.8 Score=18.57 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 776556886067988799999997698599999878997898785442265231
Q gi|254780701|r 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 373 ~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
.-++.|.|-.|| |.+++.+.. +.+..++.+-|-- .-+++..+.|-++|.+
T Consensus 50 ~~llansITLTP--GTltvdv~~-d~~~L~VH~ld~~-~~~~~~~~~i~~~~E~ 99 (106)
T pfam01899 50 LTILANSITLTP--GTLTIDLDP-EERKLYVHWIDVE-TNSPRSSEDIVGPFEK 99 (106)
T ss_pred HHHHHHHHHCCC--CEEEEEEEC-CCCEEEEEEEECC-CCCHHHHHHHHHHHHH
T ss_conf 999998771699--779999818-9998999996679-9517899885188899
No 101
>PRK11178 uridine phosphorylase; Provisional
Probab=69.12 E-value=7.4 Score=17.67 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=42.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH-----HHHHC-CCCCCCCCC
Q ss_conf 104798999988777655688606798879999999769859999987899789878-----54422-652315777
Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE-----IPTVL-TSFGQGSIA 430 (495)
Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~-----~~~iF-~~F~r~~~~ 430 (495)
.+.|||.|...|-. .+.|+......-+-... .+.- +| ..|+|.-||+|.|.-. +..+. +-|-|++.+
T Consensus 21 il~GDP~Rv~~iA~-~ld~~~~~~~~Re~~~~-tG~y-~G-~~VsV~StGmG~ps~~I~~~EL~~lg~~~iIRiGTs 93 (251)
T PRK11178 21 IVPGDPERVEKIAE-LMDNPVFLASHREFTSW-RAEL-DG-KPVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTT 93 (251)
T ss_pred EECCCHHHHHHHHH-HCCCCEEEEECCCEEEE-EEEE-CC-EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 96799899999999-61896365311555999-9999-99-999999447898619999999997196699994565
No 102
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]
Probab=69.06 E-value=7.4 Score=17.66 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHCCCCCCHHHHHHH
Q ss_conf 8899999999986556999999999999999962116999999999---99999999999876--415678503677999
Q gi|254780701|r 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT---LAVYAANLSLGKKV--MNSDIKIGEVYVWRI 108 (495)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~w~~~~---l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 108 (495)
.-|+++.+.+...++.+.+ ..+++...+....+......+|.... +.+.++.+....++ .+..+.++...+..+
T Consensus 20 nPeLlkAQyRAf~rQ~PmM-YfillsstwAlA~th~~vaP~WLtvG~PallTv~CaiRv~~Ww~~rridp~PE~Al~aL~ 98 (663)
T COG5001 20 NPELLKAQYRAFARQVPMM-YFILLSSTWALAATHLRVAPLWLTVGLPALLTVVCAIRVVGWWKIRRIDPDPERALRALA 98 (663)
T ss_pred CHHHHHHHHHHHHHHCCEE-EEHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHH
T ss_conf 9799999999998637621-103454389998877652418873471999999887511010120677988789999987
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999999---999999999831033312799999
Q gi|254780701|r 109 WLLVGQIAI---GLCWTLLTLVEPGTWTPEYLTIYK 141 (495)
Q Consensus 109 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 141 (495)
+........ -..|....+..-..++..+..+++
T Consensus 99 rTnrla~~iA~~Ft~WSlaL~pyGDAYtrshiAFYM 134 (663)
T COG5001 99 RTNRLAGFIAALFTGWSLALYPYGDAYTRSHIAFYM 134 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 232688999999987686540363077777899999
No 103
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=64.91 E-value=8.8 Score=17.04 Aligned_cols=44 Identities=30% Similarity=0.372 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764201389999999998503368789378999999999999999999999999
Q gi|254780701|r 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 (495)
Q Consensus 257 SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLd 310 (495)
|--||--..-|.||.|. +.+.++.++.|..+...+..=||+++.
T Consensus 52 smAiRvAvRRIgGFlEi----------DA~Tr~~me~i~~sIg~ls~ni~~l~~ 95 (148)
T PRK13858 52 SMAIRVAVRRIGGFLEI----------DAKTREKMEAILQSIGTLSSNINALLS 95 (148)
T ss_pred HHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999997005541----------298999999999999999889999999
No 104
>KOG0859 consensus
Probab=63.85 E-value=6.7 Score=18.04 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH-HCCCCCCEEEEEEEEECCCEEE--EEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 9988777655688-6067988799999997698599--99987899789878544226523
Q gi|254780701|r 368 MRQVILNLLSNAV-KFTAIGGRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 368 L~qvl~NLi~NAi-K~T~~gG~V~v~~~~~~~~~~~--i~V~DtG~GI~~e~~~~iF~~F~ 425 (495)
-+|+|.+|=+|.= |||-..+.-....-. ++|..+ +.+.+.|.-||=..+++|-++|.
T Consensus 29 a~qiL~klp~~~n~k~tYs~d~y~Fh~l~-~dg~tylcvadds~gR~ipfaFLe~Ik~~F~ 88 (217)
T KOG0859 29 AAQILQKLPSSSNSKFTYSCDGYTFHYLV-EDGLTYLCVADDSAGRQIPFAFLERIKEDFK 88 (217)
T ss_pred HHHHHHHCCCCCCCCEEEECCCEEEEEEE-ECCEEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999868998887357734986999998-6885999997062034153799999999999
No 105
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=63.49 E-value=9.3 Score=16.85 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH---------HCCCCC---------CEEEEEEEEECCCEEEEEEEEC
Q ss_conf 1221000367610104798999988777655688---------606798---------8799999997698599999878
Q gi|254780701|r 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV---------KFTAIG---------GRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 347 ~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi---------K~T~~g---------G~V~v~~~~~~~~~~~i~V~Dt 408 (495)
|..+.++.-...+....|+..+++++...+..+= ||.|.| +.|.++. |-+.+.+.|.|===
T Consensus 5 G~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~gatil~~~~h~F~P~GvT~v~lLaESHisiHT-wPE~g~aavDiftC 83 (127)
T PRK03124 5 GRHVIAELYGCDFDKLNDMEFIEDIMVDAALKAGAEVREVAFHKFAPQGVSGVVVISESHLTIHT-WPEHGYAAVDVFTC 83 (127)
T ss_pred CEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEE-CCCCCEEEEEEEEC
T ss_conf 10999999887836687999999999999998499798788386599968999994021689996-67688599999945
Q ss_pred CCCCCHHHHHHHCCCCCCCCC
Q ss_conf 997898785442265231577
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSI 429 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~ 429 (495)
|....|+..-.....+.+.++
T Consensus 84 g~~~~P~~a~~~L~~~lk~~~ 104 (127)
T PRK03124 84 GDRVDPWDAANYIAEGLNAKT 104 (127)
T ss_pred CCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999999999999859892
No 106
>KOG1478 consensus
Probab=62.59 E-value=4.3 Score=19.71 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999987422
Q gi|254780701|r 307 EILDLSRIEA 316 (495)
Q Consensus 307 ~lLdlsrlea 316 (495)
|+|.++-.+.
T Consensus 205 DlLh~A~~~~ 214 (341)
T KOG1478 205 DLLHVALNRN 214 (341)
T ss_pred HHHHHHHHCC
T ss_conf 9999998614
No 107
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=61.14 E-value=10 Score=16.53 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 776556886067988799999997698599999878997898785442265231
Q gi|254780701|r 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 373 ~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
..++.|.|--|| |++.+.+. ++++..++.+-|.+ =|++..+.+-++|+|
T Consensus 106 ~~~lAn~ITLTP--GTl~vdvd-~d~~~l~VH~Ld~~--d~e~~~~~i~~~~Er 154 (161)
T PRK08965 106 LTALANIITLTP--GTVVVEIS-RDRRTLLVHVLDLD--DPEALIREIKQRYER 154 (161)
T ss_pred HHHHHHHHHCCC--CCEEEEEE-CCCCEEEEEEEECC--CHHHHHHHHHHHHHH
T ss_conf 999999874367--86799986-68998999972489--999999998899999
No 108
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=61.07 E-value=5.6 Score=18.69 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=53.5
Q ss_pred EEEEECCCCCCHHH--HHHHCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCEEEEEEEC--CCCEEEEEEECHHH
Q ss_conf 99987899789878--54422652315777678999--88805899999999619859999798--99529889847247
Q gi|254780701|r 403 ISIKDNGPGIAEGE--IPTVLTSFGQGSIAIKSAEQ--GVGLGLPIAQSIMANHGGQFLIRSKL--REGVEVIAILPNTR 476 (495)
Q Consensus 403 i~V~DtG~GI~~e~--~~~iF~~F~r~~~~~~~~~~--GtGLGLaIvk~lve~hgG~i~v~S~~--G~Gt~f~v~LP~~~ 476 (495)
+-|===|||=|.|. +++|-..-. +.-+ |.=||| +.|+|+.||++.+=..| |+-|.+.|+=|-+-
T Consensus 570 LVVLSPGPGrP~dFdv~~Ti~aa~a-------r~lP~FGVCLGL---Qg~vEafGG~L~vL~~P~HGK~srirVl~p~s~ 639 (726)
T TIGR01815 570 LVVLSPGPGRPKDFDVKETIKAALA-------RDLPVFGVCLGL---QGLVEAFGGELDVLAIPVHGKASRIRVLEPDSV 639 (726)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHH-------CCCCEEEEHHHH---HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEE
T ss_conf 8986873123875447889999997-------289857741346---899987467213578887886336888368757
Q ss_pred CCCCCCC
Q ss_conf 0746998
Q gi|254780701|r 477 VLNFIPE 483 (495)
Q Consensus 477 ~~~~~p~ 483 (495)
+=..+|+
T Consensus 640 ~F~gLpe 646 (726)
T TIGR01815 640 LFAGLPE 646 (726)
T ss_pred EECCCCC
T ss_conf 8727897
No 109
>pfam11171 DUF2958 Protein of unknown function (DUF2958). Some members are annotated as lipoproteins however this cannot be confirmed. This family of proteins has no known function.
Probab=60.26 E-value=10 Score=16.42 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEEEEEC-CCEEEEEEEECCCCCCH------HHHHHHCCCCCC
Q ss_conf 0679887999999976-98599999878997898------785442265231
Q gi|254780701|r 382 FTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAE------GEIPTVLTSFGQ 426 (495)
Q Consensus 382 ~T~~gG~V~v~~~~~~-~~~~~i~V~DtG~GI~~------e~~~~iF~~F~r 426 (495)
|||.|...++-.+.++ ++...+-.+|-|.|.|+ .+++.|--||..
T Consensus 32 F~P~~~atWllteldp~dgd~~fGL~DlG~G~pElG~vsL~EL~~i~gp~gl 83 (112)
T pfam11171 32 FTPDGAATWLLTELDPADGDTLFGLCDLGLGCPELGYVSLSELASIRGPLGL 83 (112)
T ss_pred ECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHCCCCC
T ss_conf 6788671457774067888749988617999841456799998752164799
No 110
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=56.12 E-value=4.5 Score=19.52 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=43.5
Q ss_pred HCCCCCC-EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH------HHHHHHHHHHCC
Q ss_conf 6067988-799999997698599999878997898785442265231577767899988805------899999999619
Q gi|254780701|r 381 KFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG------LPIAQSIMANHG 453 (495)
Q Consensus 381 K~T~~gG-~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG------LaIvk~lve~hg 453 (495)
.|...|- .+.++.+. ++ .+...=-=|||.+|.++-.-+.=||+ =--+||||| +...|+.++ .|
T Consensus 268 dYr~r~~~~le~~~~~-Ee---kVaLvKfyPG~~p~il~~~~d~GykG-----iViEGTGLGHvs~~~ip~i~ra~d-~G 337 (413)
T TIGR02153 268 DYRRRGEKELELDDKF-EE---KVALVKFYPGLDPEILEFLVDKGYKG-----IVIEGTGLGHVSEDWIPSIKRATD-DG 337 (413)
T ss_pred EEEECCCCCCCCCCCC-CC---EEEEEEECCCCCHHHHHHHHCCCCEE-----EEEECCCCCCCHHHHHHHHHHHHH-CC
T ss_conf 1131377653206887-71---37999843898888999985187159-----998337875552358999999875-89
Q ss_pred CEEEEEEE
Q ss_conf 85999979
Q gi|254780701|r 454 GQFLIRSK 461 (495)
Q Consensus 454 G~i~v~S~ 461 (495)
--+-+.||
T Consensus 338 v~V~MTSQ 345 (413)
T TIGR02153 338 VPVVMTSQ 345 (413)
T ss_pred CEEEEEEE
T ss_conf 68999611
No 111
>pfam07328 VirD1 T-DNA border endonuclease VirD1. This family consists of several T-DNA border endonuclease VirD1 proteins which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialized bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process.
Probab=55.80 E-value=12 Score=15.85 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764201389999999998503368789378999999999999999999999999
Q gi|254780701|r 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 (495)
Q Consensus 257 SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLd 310 (495)
|--||--..-|.||.|. +.+.++.++.|..+...+..=|++++.
T Consensus 52 smAiRiAvRRIgGFlEi----------DA~Tr~~me~i~~sIg~ls~ni~~l~~ 95 (147)
T pfam07328 52 SMAIRVAVRRIGGFLEI----------DAETREKMEAILQSIGILSSNIAALLS 95 (147)
T ss_pred HHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999997005541----------299999999999999999899999999
No 112
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=54.64 E-value=13 Score=15.71 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 776556886067988799999997698599999878997898785442265231
Q gi|254780701|r 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 373 ~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
.-++.|.|--|| |++++.++. +.+..++.+-|..- +++-.+.+=++|+|
T Consensus 103 ~~~lAnsITLTP--GTltvdv~~-d~~~l~VH~Ld~~d--~e~~~~~i~~~~Er 151 (157)
T PRK12651 103 ITLLANLITLTP--GTLTLDVSD-DRKTLYIHAIDVKD--KEEEIREIKDSFEK 151 (157)
T ss_pred HHHHHHHHHCCC--CEEEEEEEC-CCCEEEEEEEECCC--HHHHHHHHHHHHHH
T ss_conf 999999993599--738999837-88989999712899--99999999999999
No 113
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.37 E-value=12 Score=15.84 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHCCCCCCEEEEE-EEEECCCEEEEEEEECCCCCCH
Q ss_conf 55688606798879999-9997698599999878997898
Q gi|254780701|r 376 LSNAVKFTAIGGRVHVT-VGWTSGRGQYISIKDNGPGIAE 414 (495)
Q Consensus 376 i~NAiK~T~~gG~V~v~-~~~~~~~~~~i~V~DtG~GI~~ 414 (495)
++||+||+..|..=.|. +..+++|..++...+|+-=--+
T Consensus 11 VG~avrYvnTgTvgrV~dIkkdEdG~~WV~LdstdLwYre 50 (97)
T COG4014 11 VGDAVRYVNTGTVGRVVDIKKDEDGDIWVVLDSTDLWYRE 50 (97)
T ss_pred HCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCEECC
T ss_conf 3335899306954657887760579669998068725211
No 114
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=51.01 E-value=9.9 Score=16.61 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8999999999850
Q gi|254780701|r 264 LNAILGFSEVIEL 276 (495)
Q Consensus 264 L~aI~g~~elL~~ 276 (495)
||.+...+-.+++
T Consensus 79 lNvliNNAGIqr~ 91 (245)
T COG3967 79 LNVLINNAGIQRN 91 (245)
T ss_pred HHEEEECCCCCCH
T ss_conf 1134303000320
No 115
>PRK06279 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=49.11 E-value=15 Score=15.05 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=30.6
Q ss_pred CCCCCCHHCCCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 0367610104798-999988777655688606798879999999769859999987899789878544226523
Q gi|254780701|r 353 KIDPSLSSVWADE-KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 353 ~~~~~~~~v~~D~-~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~ 425 (495)
++.|....+..|- .-+. .-++.|.|-.|| |.+++.+.. ++.. +.|..=-+.-++|-.+ ||+|-
T Consensus 33 ~i~P~iv~v~~~~~t~~~---~~~lANsITLTP--GTvtvDv~~-d~~~--L~VHal~~~~~edvi~--fE~y~ 96 (101)
T PRK06279 33 KIDPEVIEIETDINSPVG---QVLLASSITLTP--GTLTIDLDS-ENKI--LKVASISPRSKDDIIP--FEPYI 96 (101)
T ss_pred CCCCEEEEEECCCCCHHH---HHHHHHEEECCC--CEEEEEECC-CCCE--EEEEECCCCCHHHCCC--CHHHH
T ss_conf 999608998556687287---998966011489--669998758-8887--9999878666544045--05999
No 116
>KOG3618 consensus
Probab=48.97 E-value=15 Score=15.04 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99776420138999999999850336878937899999999999999999999999998742200156531011999999
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~ 333 (495)
+.-||-.|.|+..|.- +... +.|. -..+.+...-|+.|+.-+.|+.+. ...-.|..++.
T Consensus 310 ~~~s~~~r~~~s~~vk--~~~~---FRPF-----------~M~~menVSILFADIvGFTkMSsn-----KsA~~LV~lLN 368 (1318)
T KOG3618 310 ATSSPKNRKKKSSIVK--APIA---FRPF-----------KMQQMENVSILFADIVGFTKMSSN-----KSAHALVGLLN 368 (1318)
T ss_pred CCCCCCCCCCHHHCCC--CCCC---CCCH-----------HHHHHHHHHHHHHHHHCHHHCCCC-----CCHHHHHHHHH
T ss_conf 8887434642233133--2020---3860-----------342221235444554221002466-----56999999999
Q ss_pred HHHHHHHHHHHHCCCCCE
Q ss_conf 999999999973112210
Q gi|254780701|r 334 ECIIMLQLRAQEKNIEIF 351 (495)
Q Consensus 334 ~~~~~~~~~A~~~~~~l~ 351 (495)
|+...|..+.+..|..-.
T Consensus 369 DLFgRFD~LC~l~gcEKI 386 (1318)
T KOG3618 369 DLFGRFDRLCELTGCEKI 386 (1318)
T ss_pred HHHHHHHHHHHHCCCCHH
T ss_conf 999889888775086110
No 117
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=45.98 E-value=8.7 Score=17.06 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 4798999988777655
Q gi|254780701|r 362 WADEKGMRQVILNLLS 377 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~ 377 (495)
.-||...++-|..|+-
T Consensus 151 ~~dp~~vE~~L~~l~P 166 (192)
T TIGR01083 151 GKDPDKVEEELLKLIP 166 (192)
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 7898999999987448
No 118
>TIGR00942 2a6301s05 multicomponent Na+:H+ antiporter; InterPro: IPR004847 This family represents mnhE, one of the seven ORFs of the mnh operon of Staphylococcus aureus. The seven open reading frames (ORFs) are necessary for Na^+/H^+ antiporter function as demonstrated by functional complementation in Escherichia coli and detection of Na^+/H^+ antiport activity in membrane vesicles prepared from E. coli cells expressing the mnh operon components . In Rhizobium meliloti the phaE gene is part of a novel gene cluster required for the adaptation to alkaline pH in the presence of K^+ and is therefore a predicted K^+/H^+ antiporter that regulates internal pH, and which is required for the adaptation to the altered environment inside the plant . .
Probab=45.29 E-value=17 Score=14.61 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE-EEEEECCCCCCHHHHHHHCCCC
Q ss_conf 676101047989999887776556886067988799999997698599-9998789978987854422652
Q gi|254780701|r 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSF 424 (495)
Q Consensus 355 ~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~-i~V~DtG~GI~~e~~~~iF~~F 424 (495)
.|+...+..| +=...=.-|++|-|--|| |.|.+.+..+ ....+ ..|.|.-.--..|...+=|++|
T Consensus 78 npGf~~~~~d--Lk~e~~~~lLan~iTlTP--GT~~L~~d~d-r~~i~~~~~d~s~~e~~~e~I~~~~ek~ 143 (149)
T TIGR00942 78 NPGFVVVKTD--LKDEVALVLLANVITLTP--GTVVLEVDDD-RKIIYFHAVDISSKELESESITKSYEKI 143 (149)
T ss_pred CCCEEEEEEE--CCHHHHHHHHHHHHHCCC--CEEEEEECCC-CEEEEEEEECCCCCCHHHHHCCCCHHHH
T ss_conf 7855899862--212689998886530378--7489700387-0489999850266210023202206766
No 119
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=45.21 E-value=17 Score=14.60 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC-CCCCCHHHHHHHCCCCCCCC
Q ss_conf 6556886067988799999997698599999878-99789878544226523157
Q gi|254780701|r 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN-GPGIAEGEIPTVLTSFGQGS 428 (495)
Q Consensus 375 Li~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt-G~GI~~e~~~~iF~~F~r~~ 428 (495)
.++.+++.....+-|-|+++..+.+..-|.+-|. |.-|++++...|-+.|.+.+
T Consensus 81 ~~~~~v~~~~~~~Gi~ITASHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 135 (138)
T pfam02878 81 ALSFATRKLNADGGIMITASHNPPDYNGIKFYDSDGGPISPEVEEKIEAIIEKED 135 (138)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999616974999982789975356999889988998899999999997643
No 120
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=43.39 E-value=18 Score=14.39 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=7.0
Q ss_pred HHHCCCCCCEEEEEEE
Q ss_conf 8860679887999999
Q gi|254780701|r 379 AVKFTAIGGRVHVTVG 394 (495)
Q Consensus 379 AiK~T~~gG~V~v~~~ 394 (495)
.+|+.-++|.|.|+-.
T Consensus 399 Gik~~~~dgwvliRpS 414 (443)
T cd03089 399 GVRVDFEDGWGLVRAS 414 (443)
T ss_pred CEEEECCCEEEEEEEC
T ss_conf 3799749989999842
No 121
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.28 E-value=18 Score=14.47 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus 224 g~pediA~~v~FL~S~~a~~i-TGq~i~V 251 (257)
T PRK12859 224 GEPKDAARLIKFLVSEEAEWI-TGQVIHS 251 (257)
T ss_pred CCHHHHHHHHHHHHCCHHCCE-ECCEEEE
T ss_conf 599999999999958552586-1875896
No 122
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=40.57 E-value=20 Score=14.06 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=35.0
Q ss_pred ECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCCEE---EEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 003676101047989999887776556886067988799999997-69859---99998789978987854422652
Q gi|254780701|r 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ---YISIKDNGPGIAEGEIPTVLTSF 424 (495)
Q Consensus 352 ~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~-~~~~~---~i~V~DtG~GI~~e~~~~iF~~F 424 (495)
.++.|+...+.+|-. .-.-.-++.|.|--|| |.++|.+..+ ++... +|.|.+.-+-=+.|+...-||+|
T Consensus 123 ~~I~PGIV~v~t~l~--sd~~~t~LANSITLTP--GTLTvDv~~~~~~~~lyVHwIdv~t~d~e~a~e~I~~~FEk~ 195 (201)
T PRK08382 123 MDINPGIVKIKTDLH--SDTGITILANSITLTP--GTLTLDVVKKLDGTYLYVHWIDVETLNVEKAGEKIKGDIEEW 195 (201)
T ss_pred CCCCCCEEEEEECCC--CHHHHHHHHHHEECCC--CEEEEEEECCCCCCEEEEEEEECCCCCHHHCCCHHCCHHHHH
T ss_conf 688897799860556--7488999860002578--639997212678747999999746688133235004139999
No 123
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=39.52 E-value=20 Score=13.94 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH---HCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 199999999999999997311221000367610104798999988777655688---60679887999999976985999
Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV---KFTAIGGRVHVTVGWTSGRGQYI 403 (495)
Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi---K~T~~gG~V~v~~~~~~~~~~~i 403 (495)
.+...++.+...+.-.. .....+.. .....++--| ..++.-++.||+ .||..|+.|.|.+- +| +|
T Consensus 237 ~l~~~v~~~i~fikrn~---~~~~~v~~-l~r~~v~dyP---~~alREai~NAv~HRDYs~~~~~v~I~iy--dD---Ri 304 (467)
T COG2865 237 NLPEQVERAISFIKRNL---NVPYVVEG-LRRVEVWDYP---LEALREAIINAVIHRDYSIRGRNVHIEIY--DD---RI 304 (467)
T ss_pred CHHHHHHHHHHHHHHHC---CCCEEECC-EEEEECCCCC---HHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CC---EE
T ss_conf 77999999999999845---87356503-3576624488---89999999888885223457873389997--78---68
Q ss_pred EEEECC---CCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 998789---9789878544------------2265231577767899988805899999999619859999798995298
Q gi|254780701|r 404 SIKDNG---PGIAEGEIPT------------VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 404 ~V~DtG---~GI~~e~~~~------------iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f 468 (495)
+|..-| +||.+++..+ +|..+.-.+ --|=|..=.+.+++.||..- .+=.. ....|
T Consensus 305 eI~NPGgl~~gi~~~~l~~~~s~~RNp~LA~~l~~~~liE--------~~GSGi~rm~~~~~~~gl~~-p~f~~-~~~~~ 374 (467)
T COG2865 305 EITNPGGLPPGITPEDLLKGRSKSRNPVLAKVLRDMGLIE--------ERGSGIRRMFDLMEENGLPK-PEFEE-DNDYV 374 (467)
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHCCCCC-CEEEC-CCCEE
T ss_conf 9978998999988667056787656789999999843498--------73750899999999729999-62454-68759
Q ss_pred EEEECH
Q ss_conf 898472
Q gi|254780701|r 469 IAILPN 474 (495)
Q Consensus 469 ~v~LP~ 474 (495)
+++++.
T Consensus 375 ~~~~~~ 380 (467)
T COG2865 375 TVILHG 380 (467)
T ss_pred EEEEEC
T ss_conf 999804
No 124
>KOG0145 consensus
Probab=39.51 E-value=20 Score=13.94 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 98599999878997898785442265231577
Q gi|254780701|r 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 (495)
Q Consensus 398 ~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~ 429 (495)
++..+|=|-+-+|--++.-+=.+|.||.-+.+
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~n 307 (360)
T KOG0145 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTN 307 (360)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 87107999824887207689987375554256
No 125
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=39.42 E-value=20 Score=13.93 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=47.5
Q ss_pred CCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCCEEEEEEEEC
Q ss_conf 122100036761010479899998877765568---------8606798---------8799999997698599999878
Q gi|254780701|r 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA---------VKFTAIG---------GRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 347 ~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NA---------iK~T~~g---------G~V~v~~~~~~~~~~~i~V~Dt 408 (495)
|..+.++.-...+....|...+++++.+.+..+ -||.|.| +.|.|+. |-+.+.+.|.|===
T Consensus 7 G~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~tvl~~~~h~F~p~GvT~v~lLaESHiSiHT-wPE~g~aaiDiFTC 85 (123)
T PRK01706 7 GKHIIVDLWGVDFSLLDDMYFLEHHLVHAADLSGAHVLNVSTKEFDPHGVTVLVLLSESHLSIHT-YPEKNFAAIDCYTC 85 (123)
T ss_pred CEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEE-CCCCCEEEEEEECC
T ss_conf 42999999887834676999999999999998699899777387799988999997502689997-56588799999857
Q ss_pred CCCCCHHHH-HHHCCCCC
Q ss_conf 997898785-44226523
Q gi|254780701|r 409 GPGIAEGEI-PTVLTSFG 425 (495)
Q Consensus 409 G~GI~~e~~-~~iF~~F~ 425 (495)
|..+.|+.. +.|-+.|.
T Consensus 86 G~~~~p~~a~~~L~~~l~ 103 (123)
T PRK01706 86 GTTVEPQIAIDYIVSILK 103 (123)
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 998999999999999749
No 126
>KOG4013 consensus
Probab=39.32 E-value=20 Score=13.92 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 88058999999996198599997989952
Q gi|254780701|r 438 VGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 438 tGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
.==|+.|.++++|+|.|+|.|- ||-|-
T Consensus 163 AldGv~~i~~lie~hkg~i~Vm--pG~Gi 189 (255)
T KOG4013 163 ALDGVYIIRELIELHKGKIDVM--PGCGI 189 (255)
T ss_pred CCCCHHHHHHHHHHHCCCEEEE--CCCCC
T ss_conf 2234499999999852977882--48876
No 127
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=39.21 E-value=20 Score=13.91 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCC--CCHHCCCCHHHHHHHHHHH
Q ss_conf 99999999999999874220015653101199999999999999997311221000367--6101047989999887776
Q gi|254780701|r 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNL 375 (495)
Q Consensus 298 ~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~--~~~~v~~D~~~L~qvl~NL 375 (495)
.+.|-++|++.|.+..++...+ ..-++.+.++-....+-+...+..-+.+ -+|.-.|+..+ =
T Consensus 148 ~~~LP~~v~~~l~~~~~~~~~l---------~~~v~~~eDQ~~lR~~L~~~gLVAFVadGsiLPR~sG~sd~-------P 211 (447)
T pfam09818 148 LEALPKIVRKALLYKNLDREAL---------ERHVELVEDQEALREQLEELGLVAFVADGSILPRESGVSDR-------P 211 (447)
T ss_pred HHHHHHHHHHHHCCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC-------C
T ss_conf 9987999999834455899999---------99999998599999999878948997489757612378767-------6
Q ss_pred HHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH
Q ss_conf 5568860679887999999976985999998789978987
Q gi|254780701|r 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 (495)
Q Consensus 376 i~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e 415 (495)
+.|||.|..+. +..|++.. +++.. | +|.|||+.
T Consensus 212 l~~aVpF~SP~-sL~v~~~l-P~~g~-v----~GMGIp~G 244 (447)
T pfam09818 212 LKGAVPFESPE-SLEVEIEL-PNGGT-V----SGMGIPKG 244 (447)
T ss_pred CCCCCCCCCCC-CEEEEEEC-CCCCE-E----EECCCCCC
T ss_conf 78886767985-03899988-99985-5----64564776
No 128
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492 The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. .
Probab=39.07 E-value=16 Score=14.80 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=8.2
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 98880589999999
Q gi|254780701|r 436 QGVGLGLPIAQSIM 449 (495)
Q Consensus 436 ~GtGLGLaIvk~lv 449 (495)
+=.||||||.=.|+
T Consensus 10 PIFGLGlSi~LhLI 23 (55)
T TIGR01605 10 PIFGLGLSITLHLI 23 (55)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 83300488999999
No 129
>pfam09315 DUF1973 Domain of unknown function (DUF1973). Members of his family of functionally uncharacterized domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=39.00 E-value=21 Score=13.88 Aligned_cols=12 Identities=33% Similarity=0.590 Sum_probs=7.1
Q ss_pred EEEEEEEECCCC
Q ss_conf 599999878997
Q gi|254780701|r 400 GQYISIKDNGPG 411 (495)
Q Consensus 400 ~~~i~V~DtG~G 411 (495)
...++..|+|.|
T Consensus 155 ~~~l~L~DnGaG 166 (178)
T pfam09315 155 TVTLELLDNGAG 166 (178)
T ss_pred EEEEEEECCCCC
T ss_conf 899999638858
No 130
>PRK05717 oxidoreductase; Validated
Probab=38.93 E-value=17 Score=14.58 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.+..=|.|++-+|. .|..|.|
T Consensus 214 R~g~~edia~~v~fL~S~~ss~i-TGq~i~V 243 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRNAGFV-TGQEFVV 243 (255)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98199999999999967721481-5983897
No 131
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor; InterPro: IPR006548 These sequences represent the ELAV/HuD subfamily of splicing factors found in metazoa. HuD stands for the human paraneoplastic encephalomyelitis antigen D of which there are 4 variants in human . ELAV stands for the Drosophila Embryonic lethal abnormalvisual protein . ELAV-like splicing factors are also known in human as HuB (ELAV-like protein 2), HuC (ELAV-like protein 3, Paraneoplastic cerebellar degeneration-associated antigen) and HuR (ELAV-like protein 1). These genes are most closely related to the sex-lethal subfamily of splicing factors found in Dipteran insects (IPR006546 from INTERPRO). ; GO: 0003723 RNA binding.
Probab=38.63 E-value=16 Score=14.79 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=7.9
Q ss_pred EEECCCCCCHHHHHHHCCCCC
Q ss_conf 987899789878544226523
Q gi|254780701|r 405 IKDNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 405 V~DtG~GI~~e~~~~iF~~F~ 425 (495)
|=.=-|-=++.-+=.+|.||.
T Consensus 358 vYNLspdtde~~LWQLFgpFG 378 (436)
T TIGR01661 358 VYNLSPDTDEAVLWQLFGPFG 378 (436)
T ss_pred EECCCCCCHHHHHHHHCCCCC
T ss_conf 861898615679987427676
No 132
>PRK07831 short chain dehydrogenase; Provisional
Probab=38.44 E-value=17 Score=14.61 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|++-.|. .|..|.|
T Consensus 228 ~g~pediA~~v~fLaSd~s~~i-TGq~i~V 256 (261)
T PRK07831 228 AAEPWEVAAVIAFLASDYSSYL-TGEVVSV 256 (261)
T ss_pred CCCHHHHHHHHHHHHCHHHCCC-CCEEEEE
T ss_conf 7599999999999958154697-5738898
No 133
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.77 E-value=21 Score=13.74 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 999887776556886067988799999
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
-|.+...+| |..+-+. | |+|-+
T Consensus 168 Al~~ltr~l---A~elg~~-g-IRVNa 189 (272)
T PRK08159 168 ALEASVRYL---AVDLGPK-N-IRVNA 189 (272)
T ss_pred HHHHHHHHH---HHHHCCC-C-EEEEE
T ss_conf 999999999---9975789-9-89999
No 134
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=37.18 E-value=22 Score=13.67 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=48.9
Q ss_pred CCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCCEEEEEEEEC
Q ss_conf 122100036761010479899998877765568---------8606798---------8799999997698599999878
Q gi|254780701|r 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA---------VKFTAIG---------GRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 347 ~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NA---------iK~T~~g---------G~V~v~~~~~~~~~~~i~V~Dt 408 (495)
|..+.++.-...+.+..|...+++++.+.+..+ -||.|.| +.|.++. |-+.+.+.+.|===
T Consensus 4 G~Hli~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~~il~~~~~~f~p~GvT~v~ll~ESHisiHT-wPE~g~aaiDiftC 82 (112)
T TIGR03330 4 GRHLIVDLYGCDPEKLDDVEFIEEILLEAAKVAGATLVASHFHKFSPGGVSGVVLLAESHISIHT-WPEYGYAAVDVFTC 82 (112)
T ss_pred EEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEE-CCCCCEEEEEEEEC
T ss_conf 88999999777957877999999999999998699799888697499979999993243699998-67888499999863
Q ss_pred CCCCCHHHHHHHCCCCCCC
Q ss_conf 9978987854422652315
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQG 427 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~ 427 (495)
|....|+..-.....+.+.
T Consensus 83 g~~~~p~~a~~~l~~~f~~ 101 (112)
T TIGR03330 83 GDHSDPEKAFEYLVEALKP 101 (112)
T ss_pred CCCCCHHHHHHHHHHHHCC
T ss_conf 8999999999999997299
No 135
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=37.12 E-value=18 Score=14.32 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEECCCCCCHHCCCCHHHHHHH
Q ss_conf 9999987422001565310119999999999999999731---1221000367610104798999988
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK---NIEIFQKIDPSLSSVWADEKGMRQV 371 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~---~~~l~~~~~~~~~~v~~D~~~L~qv 371 (495)
=|.|+--+|..+.+ +..-++-..+++.+.... ... |..+.+++ |=.|-+-.|+.-++-+
T Consensus 184 fL~DiK~~D~~~H~-~~tG~~N~~IL~NL~~L~----~~~~~GG~~v~iR~-PvIpG~Nds~~~i~a~ 245 (305)
T TIGR02494 184 FLYDIKHLDDERHK-EVTGVDNELILENLEALL----AAGKDGGKNVVIRI-PVIPGFNDSEENIEAI 245 (305)
T ss_pred HHHHHHHCCCHHHH-HHCCCCHHHHHHHHHHHH----HHCCCCCCEEEEEE-ECCCCCCCCHHHHHHH
T ss_conf 98726411801205-533898378999999999----71788995589987-2048989898999999
No 136
>PRK12937 short chain dehydrogenase; Provisional
Probab=37.01 E-value=19 Score=14.23 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=4.8
Q ss_pred HCCCCCCEEEEEE
Q ss_conf 6067988799999
Q gi|254780701|r 381 KFTAIGGRVHVTV 393 (495)
Q Consensus 381 K~T~~gG~V~v~~ 393 (495)
.+.+. | |+|-+
T Consensus 170 el~~~-g-IrVN~ 180 (245)
T PRK12937 170 ELRGR-G-ITVNA 180 (245)
T ss_pred HHHHH-C-EEEEE
T ss_conf 96051-9-29999
No 137
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=36.84 E-value=22 Score=13.63 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=4.7
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 1999999999999
Q gi|254780701|r 327 SLIDIVRECIIML 339 (495)
Q Consensus 327 ~L~~li~~~~~~~ 339 (495)
.-..-+.+++..+
T Consensus 380 ~~t~tv~~ai~iL 392 (527)
T TIGR01137 380 HPTETVGDAIEIL 392 (527)
T ss_pred CCCCHHHHHHHHH
T ss_conf 6764089999999
No 138
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=36.59 E-value=22 Score=13.60 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=12.6
Q ss_pred EEEEEEECCCCCCHHHHH
Q ss_conf 999998789978987854
Q gi|254780701|r 401 QYISIKDNGPGIAEGEIP 418 (495)
Q Consensus 401 ~~i~V~DtG~GI~~e~~~ 418 (495)
..+-|+++|+|+..--..
T Consensus 340 ~~livc~~g~~~~~~l~~ 357 (426)
T PRK11564 340 QILLLTGDNPELEAQIEQ 357 (426)
T ss_pred EEEEEECCCHHHHHHHHH
T ss_conf 189995897479999999
No 139
>PRK07062 short chain dehydrogenase; Provisional
Probab=36.55 E-value=22 Score=13.59 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
+.|.-+-.++.=|.|..-.|.
T Consensus 230 g~peevA~~v~fLaS~~s~~i 250 (265)
T PRK07062 230 GRPDEAARALFFLASPLSSYT 250 (265)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 689999999999968732573
No 140
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=35.95 E-value=23 Score=13.52 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCCC----EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf 76556886067988----79999999769859999987899789878544226
Q gi|254780701|r 374 NLLSNAVKFTAIGG----RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 (495)
Q Consensus 374 NLi~NAiK~T~~gG----~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~ 422 (495)
|||+.-|.|+...| -+..++....++.+.+ .-|+|..|++++.-.|-+
T Consensus 92 slIGk~V~~~~~dg~~~sG~V~sv~~~~~g~v~~-~ldnG~~i~~~~V~~V~~ 143 (146)
T PRK09618 92 EWIGKEVEWEHGDGEIVKGTVTSVKTGINGQVMV-ELDDGKWYVASNVTSVGL 143 (146)
T ss_pred HHCCCEEEEECCCCCEEEEEEEEEEECCCCEEEE-EECCCCEECHHHCEEECC
T ss_conf 5559878997389988877899999865984999-976994985798747334
No 141
>PRK08219 short chain dehydrogenase; Provisional
Probab=35.81 E-value=23 Score=13.50 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.8
Q ss_pred ECCCCCCHHHHHH
Q ss_conf 7899789878544
Q gi|254780701|r 407 DNGPGIAEGEIPT 419 (495)
Q Consensus 407 DtG~GI~~e~~~~ 419 (495)
|.|.=+.|||...
T Consensus 190 ~~~r~~~PedVA~ 202 (226)
T PRK08219 190 DPARFLRPETVAA 202 (226)
T ss_pred CCCCCCCHHHHHH
T ss_conf 8767969999999
No 142
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=35.56 E-value=23 Score=13.47 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH
Q ss_conf 47989999887776556886067988799999997698599999878997898
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~ 414 (495)
.|||.|-.=|--..+.||-.+|+-=|----+=.. .| ..|+|-=+|-|||-
T Consensus 16 PGDPLRakyIAe~FL~~~~~vneVRgMlgFTG~Y--KG-k~IsvmGhGMGIPS 65 (234)
T TIGR00107 16 PGDPLRAKYIAETFLEDAKEVNEVRGMLGFTGTY--KG-KKISVMGHGMGIPS 65 (234)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CC-CEEEEEECCCCCCC
T ss_conf 6284125688887620766763025432301110--46-35888640565553
No 143
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=35.48 E-value=20 Score=13.98 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 47989999887776556886067988799
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.+.|.-+-+.+.-|++++-.|. .|..+.
T Consensus 200 ~~~PeeiA~~i~~L~s~~s~~~-tG~~i~ 227 (235)
T PRK09009 200 LFTPEYVAQCLLGIIANATPAQ-SGSFLA 227 (235)
T ss_pred CCCHHHHHHHHHHHHCCCCCCC-CCCEEE
T ss_conf 8299999999999971697236-988897
No 144
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1; InterPro: IPR014326 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This group of sigma factors are members of the sigma-70 family (IPR014284 from INTERPRO) and are apparently found only in the Planctomycetaceae family including the genus s Gemmata and Pirellula, in which seven sequences are found.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=35.41 E-value=23 Score=13.46 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99998877765568860
Q gi|254780701|r 366 KGMRQVILNLLSNAVKF 382 (495)
Q Consensus 366 ~~L~qvl~NLi~NAiK~ 382 (495)
.+||+||.|=|.++++.
T Consensus 66 ~WLR~IL~~~l~~~~~~ 82 (190)
T TIGR02984 66 GWLRQILANVLADALRR 82 (190)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998
No 145
>PRK07041 short chain dehydrogenase; Provisional
Probab=34.74 E-value=22 Score=13.67 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 47989999887776556886067988799
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.+.|.-+-+++.=|.+| +|. .|..+.
T Consensus 207 ~g~pedia~~v~fL~s~--~~i-tG~~i~ 232 (240)
T PRK07041 207 VGQPEDVANAIVFLAAN--GFA-TGSTVL 232 (240)
T ss_pred CCCHHHHHHHHHHHHHC--CCC-CCCEEE
T ss_conf 84999999999999847--887-898278
No 146
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=34.70 E-value=22 Score=13.67 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 798999988777
Q gi|254780701|r 363 ADEKGMRQVILN 374 (495)
Q Consensus 363 ~D~~~L~qvl~N 374 (495)
.|+..+++++..
T Consensus 62 ~~~~~v~~~~~~ 73 (167)
T pfam00106 62 ADRDALAALLAA 73 (167)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999999
No 147
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.46 E-value=24 Score=13.34 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=5.7
Q ss_pred HHHCCCCCCEEEEEE
Q ss_conf 886067988799999
Q gi|254780701|r 379 AVKFTAIGGRVHVTV 393 (495)
Q Consensus 379 AiK~T~~gG~V~v~~ 393 (495)
|..+.|. | |+|-+
T Consensus 182 A~ela~~-g-IrVN~ 194 (257)
T PRK12748 182 APVLAEK-G-ITVNA 194 (257)
T ss_pred HHHHHHH-C-EEEEE
T ss_conf 9997230-9-49999
No 148
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.39 E-value=22 Score=13.69 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-.++.=|.|.+-.|.
T Consensus 224 g~peeiA~~v~FLaSd~s~~i 244 (258)
T PRK06935 224 GEPDDLMGAAVFLASRASDYV 244 (258)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999838432691
No 149
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=34.10 E-value=22 Score=13.58 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4798999988777655688606798879999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.++|.-+-.++.-|.|-+-.|. .|..+.|.
T Consensus 225 ~g~p~dia~~v~FL~Sd~s~~i-TGq~i~VD 254 (265)
T PRK07097 225 WGTPEDLAGPAVFLASDASNFV-NGHILYVD 254 (265)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 7889999999999948442483-58759979
No 150
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C-terminus. This region is strongly conserved (greater than 30 equence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence. .
Probab=33.99 E-value=24 Score=13.29 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCCCCHHCC-CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 367610104-798999988777655688606798
Q gi|254780701|r 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 354 ~~~~~~~v~-~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
+-..+|.|+ |-+.+|+|++ .|+..|+|.+=..
T Consensus 86 ~l~~LP~VfVGk~~rL~~~v-~l~c~a~k~SLk~ 118 (144)
T TIGR01615 86 LLESLPEVFVGKEERLKQLV-RLVCDAAKKSLKK 118 (144)
T ss_pred HHHHCCEEEECCHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 99839947730416788999-9999999987874
No 151
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=33.96 E-value=24 Score=13.28 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH------------HCCCEEEEEEECCCCEEE
Q ss_conf 99999878997898785442265231577767899988805899999999------------619859999798995298
Q gi|254780701|r 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA------------NHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve------------~hgG~i~v~S~~G~Gt~f 468 (495)
..+.+.| +.+.-.|-+.|.++++.-+ +|+++=++ =|+|++-|+|+.|.=|-|
T Consensus 459 ~~fYa~D------~~~~NgLidAFg~lsS~~~----------~~sQ~~lQLESkgL~l~~~~W~NgTV~vDSTvG~DTfF 522 (874)
T TIGR00868 459 LRFYASD------EADNNGLIDAFGALSSGNG----------SVSQQSLQLESKGLTLQENAWMNGTVVVDSTVGKDTFF 522 (874)
T ss_pred CEEEEEC------HHHCCCHHHHHHHHCCCCH----------HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE
T ss_conf 1133413------3331414546642214761----------25555555543210002688105757861102786048
Q ss_pred EEEECHHHCCCCCCCCCCCCC
Q ss_conf 898472470746998764434
Q gi|254780701|r 469 IAILPNTRVLNFIPEDNHEST 489 (495)
Q Consensus 469 ~v~LP~~~~~~~~p~~~~~~~ 489 (495)
.||+-+.-..|..--.++-+.
T Consensus 523 liTw~rk~~~P~i~l~dP~G~ 543 (874)
T TIGR00868 523 LITWERKVLKPEILLQDPSGK 543 (874)
T ss_pred EEEEECCCCCCEEEEECCCCC
T ss_conf 886300146970486568884
No 152
>PRK06841 short chain dehydrogenase; Provisional
Probab=33.83 E-value=23 Score=13.51 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.++.=|.|.+-.|. .|..+.|
T Consensus 220 ~g~pediA~~v~fLaSd~ss~i-TG~~i~V 248 (255)
T PRK06841 220 FAYPEEIAAAALFLASDAAAMI-TGENLVI 248 (255)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7789999999999968732385-5870895
No 153
>pfam06816 NOD NOTCH protein. NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals. NOD and NODP represent a region present in many NOTCH proteins and NOTCH homologs in multiple species such as NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. Role of NOD domain remains to be elucidated.
Probab=33.68 E-value=24 Score=13.25 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8899999776420138
Q gi|254780701|r 249 KSRFLASMSHELRTPL 264 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL 264 (495)
...||-.+||.|||-+
T Consensus 24 ~~~FLr~ls~~Lrt~v 39 (56)
T pfam06816 24 SVQFLRELSHLLRTNV 39 (56)
T ss_pred HHHHHHHHHHHHHHEE
T ss_conf 9899999998763069
No 154
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=33.35 E-value=24 Score=13.37 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.-|+|+.-.|. .|..|.|
T Consensus 224 ~g~p~diA~~v~fL~S~~a~~i-TG~~i~v 252 (259)
T PRK12384 224 GCDYQDVLNMLLFYASPKASYC-TGQSINV 252 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 9699999999999958563380-3872898
No 155
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.34 E-value=25 Score=13.21 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7989999887776556886067988
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
++|.-+-.+..=|.|.+-+|. .|.
T Consensus 254 g~peeiA~~v~FLaSd~as~I-TG~ 277 (298)
T PRK06300 254 MEAEQVGAVAAFLVSPLASAI-TGE 277 (298)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCC
T ss_conf 899999999999808400695-788
No 156
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=33.10 E-value=23 Score=13.42 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 7989999887776556886067988799
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
++|.-+-.+..=|+|++-.|. .|..|.
T Consensus 221 g~p~dIa~~v~fL~Sd~s~~i-TGq~i~ 247 (252)
T PRK06947 221 GEADEVAEAIVWLLSDAASYV-TGALLD 247 (252)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf 199999999999968711486-585378
No 157
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.09 E-value=25 Score=13.18 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780701|r 72 FPMWSLITLA 81 (495)
Q Consensus 72 ~~~w~~~~l~ 81 (495)
.++|..-+++
T Consensus 67 ~GAWlADTLF 76 (1355)
T PRK10263 67 PGAWLADTLF 76 (1355)
T ss_pred HHHHHHHHHH
T ss_conf 5189998999
No 158
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=32.77 E-value=25 Score=13.14 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCC----
Q ss_conf 7899999999999999999999999998742200--15653---10119999999999999999731122100036----
Q gi|254780701|r 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR--YELSE---SAISLIDIVRECIIMLQLRAQEKNIEIFQKID---- 355 (495)
Q Consensus 285 ~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~--~~l~~---~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~---- 355 (495)
.=.|+|++...=+--|+.. |-.+++|. --+|. +-+++.++|+.+- +--|..+.++..
T Consensus 232 TcvRDYIHV~DLA~AH~~A-------l~~L~~g~~s~~~NlG~G~G~SV~EVi~a~~-------~vsG~~~~~~~~~RR~ 297 (341)
T TIGR01179 232 TCVRDYIHVMDLAEAHLAA-------LEYLENGGESHVYNLGYGQGFSVLEVIEAFK-------KVSGKDIPVELAPRRP 297 (341)
T ss_pred CEEEEEEECCCHHHHHHHH-------HHHHHCCCCEEEEECCCCCCCCHHHHHHHHH-------HHCCCEEEEEECCCCC
T ss_conf 7653002002077789999-------9998607963698624675410999999986-------6109813788768779
Q ss_pred CCCHHCCCCHHHHHHHH
Q ss_conf 76101047989999887
Q gi|254780701|r 356 PSLSSVWADEKGMRQVI 372 (495)
Q Consensus 356 ~~~~~v~~D~~~L~qvl 372 (495)
.|+|.++||+.+.+|.|
T Consensus 298 GDpa~l~Ada~ki~~~L 314 (341)
T TIGR01179 298 GDPASLVADASKIRREL 314 (341)
T ss_pred CCCCEEECCHHHHHHHC
T ss_conf 88454873869999753
No 159
>PRK07577 short chain dehydrogenase; Provisional
Probab=32.53 E-value=25 Score=13.17 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-+++.-|+|+.-.|. .|..|.|
T Consensus 199 R~g~p~eia~~v~fL~s~~s~~i-tGq~i~V 228 (234)
T PRK07577 199 RLGTPEEVAAAIAFLLSDDAGFI-TGQVLGV 228 (234)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98889999999999958521581-2824784
No 160
>KOG3822 consensus
Probab=32.38 E-value=17 Score=14.50 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 9999999961985999979899529889847
Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
-|--+++.-|||.+.+.|.|| |.+.|+.-
T Consensus 410 MIPGKlVKGMGGAMDLVss~~--trVvvtMe 438 (516)
T KOG3822 410 MIPGKLVKGMGGAMDLVSSPK--TRVVVTME 438 (516)
T ss_pred CCCCHHHCCCCCCCHHHHCCC--CEEEEEEE
T ss_conf 036123226664102331788--54999986
No 161
>PRK07576 short chain dehydrogenase; Provisional
Probab=32.37 E-value=23 Score=13.48 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 047989999887776556886067988799999997
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~ 396 (495)
-.+.|.-+-.++.=|.|.+-+|. .|..|.|.-++.
T Consensus 216 R~g~pedia~~v~FL~Sd~s~~i-TG~~i~VDGG~s 250 (260)
T PRK07576 216 RNGTGQDIANAALFLASDMASYI-TGVVLPVDGGWS 250 (260)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEECCCCC
T ss_conf 98699999999999958742482-586188793911
No 162
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.33 E-value=25 Score=13.14 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|+|..-+|. .|..|.|
T Consensus 221 ~g~pediA~~v~fL~Sd~a~~i-TG~~i~V 249 (259)
T PRK08340 221 TGRWEELGSLIAFLLSENAEYM-LGSTIVF 249 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8599999999999958642682-1823899
No 163
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.32 E-value=16 Score=14.80 Aligned_cols=51 Identities=6% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 89999887776556886067988799999997698599999878997898785442265231577
Q gi|254780701|r 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 (495)
Q Consensus 365 ~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~ 429 (495)
+..+++.+.-++++.-. |.-. .+.|.|+++|+-+.+.++..-|.++|...+
T Consensus 24 ~~AV~kAv~~~~~~~~~--P~~t------------~VhfKVS~QGITLTDn~Rk~FFRRHYp~~~ 74 (138)
T cd01213 24 NEAIKKAIAQCSGQAPD--PQAT------------EVHFKVSSQGITLTDNTRKKFFRRHYKVDS 74 (138)
T ss_pred HHHHHHHHHHHHCCCCC--CCCE------------EEEEEECCCCEEEEECCHHHHHHHCCCCCE
T ss_conf 78999999999708999--8766------------899997577557884330133331166330
No 164
>PRK07069 short chain dehydrogenase; Validated
Probab=32.19 E-value=25 Score=13.12 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 04798999988777655688606798879999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
-.++|.-+-.++.-|.|.+-+|. .|..|.|.
T Consensus 215 R~g~pedia~~v~fL~Sd~s~~i-TG~~i~VD 245 (251)
T PRK07069 215 RLGEPDDVAHAVLYLASDESRFV-TGAELVID 245 (251)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 98589999999999958542482-58617738
No 165
>PRK06940 short chain dehydrogenase; Provisional
Probab=32.03 E-value=26 Score=13.04 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 04798999988777655688606798879999999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~ 395 (495)
-.++|.-+-.++.=|.|++-.|. .|..|.|.=++
T Consensus 233 R~g~peeia~~v~FL~Sd~as~i-TG~~i~VDGG~ 266 (277)
T PRK06940 233 RIGTPDDIAAAAEFLMGPEGSFI-TGADLLVDGGV 266 (277)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEECCCC
T ss_conf 98789999999999958443694-48438958571
No 166
>PRK05884 short chain dehydrogenase; Provisional
Probab=32.01 E-value=24 Score=13.28 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=8.8
Q ss_pred HHHHHHHHCCCE-EEEEEE-CC
Q ss_conf 999999961985-999979-89
Q gi|254780701|r 444 IAQSIMANHGGQ-FLIRSK-LR 463 (495)
Q Consensus 444 Ivk~lve~hgG~-i~v~S~-~G 463 (495)
.+|.++...+.+ |+|-+. ||
T Consensus 150 ~t~~lA~e~~~~gIrVN~IaPG 171 (223)
T PRK05884 150 WTAGQAEVFGTRGITINAVACG 171 (223)
T ss_pred HHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999967659799798079
No 167
>PRK07774 short chain dehydrogenase; Provisional
Probab=31.94 E-value=26 Score=13.05 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-.++.=|.|..-.|.
T Consensus 215 g~pedia~~v~fL~S~~s~~i 235 (250)
T PRK07774 215 GTPEDLVGMCLFLLSDAASWI 235 (250)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 599999999999948242686
No 168
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=31.84 E-value=26 Score=13.04 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-.+..=|.|++-.|.
T Consensus 225 g~peeia~~v~fLaSd~as~i 245 (259)
T PRK08213 225 GDDEDLKGAALLLASDASKHI 245 (259)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 199999999999968253585
No 169
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=31.76 E-value=26 Score=13.01 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+..++.=|.|+.-.|. .|..+.|
T Consensus 218 ~g~p~dIa~~v~FL~S~~asyi-TG~~i~V 246 (261)
T PRK08936 218 IGKPEEIAAVAAWLASSEASYV-TGITLFA 246 (261)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8399999999999827432683-3873887
No 170
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=31.67 E-value=26 Score=13.04 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.+..=|.|.+-.|. .|..+.|
T Consensus 217 R~g~pedia~~~~fLaS~~ss~i-TG~~i~V 246 (254)
T PRK08085 217 RWGDPQELIGAAVFLSSKASDFV-NGHLLFV 246 (254)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98899999999999957522486-5874998
No 171
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120 This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase..
Probab=31.60 E-value=26 Score=12.99 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_conf 9999999999999---99999999987
Q gi|254780701|r 290 YIGDIHRSGQHLL---NLINEILDLSR 313 (495)
Q Consensus 290 ~l~~i~~s~~~L~---~Li~~lLdlsr 313 (495)
..+.+-.-|+||- ++|||+||++-
T Consensus 198 v~n~LY~yGkhLGLAFQvvDDiLDFTg 224 (325)
T TIGR02749 198 VANDLYEYGKHLGLAFQVVDDILDFTG 224 (325)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 999987765661633544554515778
No 172
>pfam05127 DUF699 Putative ATPase (DUF699). This putative domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often associated with pfam00583. This domain is found in isolation in the uncharacterized protein HI1254 from Haemophilus influenzae.
Probab=31.35 E-value=26 Score=12.96 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHH
Q ss_conf 999878997898785442265231577767-899988805899
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPI 444 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~-~~~~GtGLGLaI 444 (495)
+-|.|---+||...+.++.+.|.|.=-+.| ..++|||=|+++
T Consensus 78 llvVDEAAaIP~p~L~~ll~~~~rvvfaTTihGYEGtGRgF~l 120 (160)
T pfam05127 78 LLVVDEAAAIPLPLLKQLLEGFPRVVFATTVHGYEGTGRGFSL 120 (160)
T ss_pred EEEEEHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH
T ss_conf 8997324218889999998508869999633651145812456
No 173
>PRK07856 short chain dehydrogenase; Provisional
Probab=31.31 E-value=26 Score=12.96 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.++.=|.|..-.|. .|..|.|
T Consensus 208 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V 236 (254)
T PRK07856 208 LATPADIGWACLFLASDAASYV-SGANLEV 236 (254)
T ss_pred CCCHHHHHHHHHHHHCCHHCCE-ECCEEEE
T ss_conf 7699999999999958721681-0855788
No 174
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=31.20 E-value=26 Score=12.94 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=4.7
Q ss_pred HCCCCCCEEEEEE
Q ss_conf 6067988799999
Q gi|254780701|r 381 KFTAIGGRVHVTV 393 (495)
Q Consensus 381 K~T~~gG~V~v~~ 393 (495)
.+.+. | |+|.+
T Consensus 164 El~~~-g-IrVn~ 174 (248)
T PRK10538 164 DLHGT-A-VRVTD 174 (248)
T ss_pred HHCCC-C-EEEEE
T ss_conf 84786-8-59999
No 175
>MTH00204 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=31.15 E-value=24 Score=13.31 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99988777655688606798
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~g 386 (495)
..-+.+.|+++|+++|+|.|
T Consensus 466 i~P~~il~~i~~sv~~~~~~ 485 (486)
T MTH00204 466 IVPFPIIDLVKNSLVFSPGG 485 (486)
T ss_pred HCCHHHHHHHHHHEECCCCC
T ss_conf 73198998887742418899
No 176
>PRK08177 short chain dehydrogenase; Provisional
Probab=31.08 E-value=27 Score=12.93 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=5.2
Q ss_pred HHHCCCCCCEEEEEE
Q ss_conf 886067988799999
Q gi|254780701|r 379 AVKFTAIGGRVHVTV 393 (495)
Q Consensus 379 AiK~T~~gG~V~v~~ 393 (495)
|..+.+. | |+|.+
T Consensus 162 a~El~~~-g-I~Vn~ 174 (225)
T PRK08177 162 VAELGEP-D-LTVLS 174 (225)
T ss_pred HHHHCCC-C-EEEEE
T ss_conf 9984657-8-29999
No 177
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.07 E-value=25 Score=13.14 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.+..=|.|.+-.|. .|..|.|
T Consensus 202 ~g~p~eiA~~v~FLaSd~as~i-TG~~i~V 230 (237)
T PRK06550 202 WAEPEEVAELTLFLASGKADYM-QGTIVPI 230 (237)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7889999999999958553381-4862896
No 178
>PRK09135 pteridine reductase; Provisional
Probab=30.92 E-value=27 Score=12.91 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHC
Q ss_conf 8860679887999999976985999998789978987854422
Q gi|254780701|r 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 (495)
Q Consensus 379 AiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF 421 (495)
|..+.| + |+|-+= ..|. |.-.+....++++..+++.
T Consensus 171 A~ela~--~-IrVNaV--aPG~--i~t~~~~~~~~~~~~~~~~ 206 (249)
T PRK09135 171 ALELAP--E-VRVNAV--APGA--ILWPENDQGLDAEARQAIL 206 (249)
T ss_pred HHHHCC--C-CEEEEE--ECCC--CCCCCCCCCCCHHHHHHHH
T ss_conf 999779--9-889999--3077--3677633449999999998
No 179
>pfam09190 DALR_2 DALR domain. This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=30.82 E-value=27 Score=12.89 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999997764201389
Q gi|254780701|r 251 RFLASMSHELRTPLN 265 (495)
Q Consensus 251 ~FlA~~SHELRTPL~ 265 (495)
+|...|..|+.||..
T Consensus 1 ~F~~AMdDDfNTp~A 15 (62)
T pfam09190 1 RFIEAMDDDFNTPEA 15 (62)
T ss_pred CHHHHHHHHCCCHHH
T ss_conf 957776514475999
No 180
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.67 E-value=27 Score=12.87 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 98999988777655688606
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~T 383 (495)
+|.-+..++.=|+|+.-.|.
T Consensus 215 ~p~dva~~v~fL~S~~s~~i 234 (248)
T PRK05557 215 QPEEIASAVAFLASDEAAYI 234 (248)
T ss_pred CHHHHHHHHHHHHCCHHCCC
T ss_conf 99999999999968722283
No 181
>PRK06057 short chain dehydrogenase; Provisional
Probab=30.65 E-value=27 Score=12.87 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4798999988777655688606798879999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.++|.-+-.+..=|.|.+-.|. .|..+.|.
T Consensus 215 ~g~peeiA~~v~fLaSd~ss~i-TG~~i~VD 244 (255)
T PRK06057 215 FAEPEEIAAAVAFLASDDASFI-TASTFLVD 244 (255)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 7889999999999967642482-68738869
No 182
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=30.63 E-value=25 Score=13.10 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.+..=|.|.+-.|. .|..+.|
T Consensus 215 ~g~peeia~~v~fLaSd~s~~i-TG~~i~V 243 (251)
T PRK07523 215 WGKVEELVGACIFLASDASSFV-NGHVLYV 243 (251)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7899999999999948742482-6874880
No 183
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=30.62 E-value=27 Score=12.88 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 79899998877765568
Q gi|254780701|r 363 ADEKGMRQVILNLLSNA 379 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NA 379 (495)
++|.-+-..+.=|.|++
T Consensus 215 g~pediA~~v~fLasd~ 231 (247)
T PRK12935 215 GQADEIAKGVVYLCRDG 231 (247)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 59999999999995797
No 184
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.56 E-value=27 Score=12.86 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4798999988777655688606798879999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.++|.-+-.+..-|.|.+-.|. .|..|.|.
T Consensus 216 ~g~pedia~~v~fL~S~~a~~i-TG~~i~VD 245 (251)
T PRK12481 216 WGTPDDLAGPAIFLSSSASDYV-TGYTLAVD 245 (251)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 8689999999999938253590-48558978
No 185
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=30.53 E-value=26 Score=12.98 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 04798999988777655688606798879999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
-.+.|.-+-.++.=|.|++-.|. .|..|.|.
T Consensus 217 R~g~peeiA~~v~fLaSd~as~i-TG~~i~VD 247 (261)
T PRK12428 217 RPATADEQAAVLVFLCSDAARWI-NGVNLPVD 247 (261)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEECC
T ss_conf 98099999999999949632573-68428829
No 186
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=30.43 E-value=27 Score=12.84 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
+++|.-+-.+..-|.|+.-.|. .|..|.|
T Consensus 210 ~g~p~dia~~v~fL~S~~a~~i-TGq~i~V 238 (245)
T PRK12936 210 MGTGAEVASAVAYLASDEAAYV-TGQTLHV 238 (245)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8299999999999968343484-6871797
No 187
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.40 E-value=26 Score=12.97 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-....=|.|.+-.|.
T Consensus 228 g~peeiA~~v~FLaSd~as~i 248 (262)
T PRK06114 228 ADVDEMVGPAVFLLSDAASFV 248 (262)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 689999999999957632475
No 188
>PRK12828 short chain dehydrogenase; Provisional
Probab=30.37 E-value=27 Score=12.88 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
+.|.-+-....-|.|.+-+|. .|..|.|
T Consensus 205 ~~p~diA~~v~fL~Sd~s~~i-TG~~i~V 232 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDEAQAI-TGASIPV 232 (239)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 999999999999958442285-5874897
No 189
>pfam11212 DUF2999 Protein of unknown function (DUF2999). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.35 E-value=27 Score=12.83 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCC
Q ss_conf 013899999999985033687893789999999999999999999999-9998742200156
Q gi|254780701|r 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI-LDLSRIEAGRYEL 321 (495)
Q Consensus 261 RTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~l-Ldlsrleag~~~l 321 (495)
.+|+.++....++ | ...++.+.....+...-.-...-++++ ||+||.|+.+-++
T Consensus 27 eNP~~AM~~i~qL------G-ip~eKLQ~lm~~VM~nP~LIkeAv~elgLdfskve~Akakl 81 (82)
T pfam11212 27 ENPLMAMATIQQL------G-IPPEKLQQLMMLVMQNPALIKEAVEELGLDFSKVEAAKAKL 81 (82)
T ss_pred HCHHHHHHHHHHC------C-CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 2979999999980------8-99999999999997192889999999678789999998753
No 190
>PRK08589 short chain dehydrogenase; Validated
Probab=30.25 E-value=26 Score=13.02 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.+..=|.|.+-.|. .|..+.|
T Consensus 220 ~g~peeiA~~v~FLaSd~asyi-TG~~i~V 248 (272)
T PRK08589 220 LGKPEEVAKLVVFLASDDSSFI-TGETIRI 248 (272)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7789999999999818521783-6854898
No 191
>PRK09186 flagellin modification protein A; Provisional
Probab=30.14 E-value=27 Score=12.81 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899998877765568860
Q gi|254780701|r 365 EKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 365 ~~~L~qvl~NLi~NAiK~ 382 (495)
|.-+-.++.=|+|+.-+|
T Consensus 224 p~dia~~v~fL~Sd~s~~ 241 (255)
T PRK09186 224 PEDICGSLVFLLSDQSKY 241 (255)
T ss_pred HHHHHHHHHHHHCCHHCC
T ss_conf 999999999995705368
No 192
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase; InterPro: IPR011780 This family consists of D-serine ammonia-lyases, pyridoxal-phosphate enzymes that convert D-serine to pyruvate and NH3. These enzyme are also called D-serine dehydratase and D-serine deaminase and was previously designated 4.2.1.14 from EC. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.; GO: 0008721 D-serine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0046416 D-amino acid metabolic process.
Probab=30.12 E-value=19 Score=14.21 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=16.0
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 74220015653101199999999999999997311221000
Q gi|254780701|r 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 (495)
Q Consensus 313 rleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~ 353 (495)
|+=.|-++++- +++-+.+..+++..++.++=.
T Consensus 347 ~lL~G~yTv~D---------~~LY~~L~~L~~~e~~rlEPS 378 (431)
T TIGR02035 347 PLLSGIYTVDD---------DTLYDLLRLLAESEGKRLEPS 378 (431)
T ss_pred HHHCCEEEEEH---------HHHHHHHHHHHHHCCCEECHH
T ss_conf 88587053106---------899999999986378502656
No 193
>PRK08945 short chain dehydrogenase; Provisional
Probab=30.08 E-value=27 Score=12.82 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=4.8
Q ss_pred HHHCCCCCCEEEEEE
Q ss_conf 886067988799999
Q gi|254780701|r 379 AVKFTAIGGRVHVTV 393 (495)
Q Consensus 379 AiK~T~~gG~V~v~~ 393 (495)
|..+.+. | |+|.+
T Consensus 181 a~El~~~-g-IrVN~ 193 (245)
T PRK08945 181 ADEYQGT-N-LRVNC 193 (245)
T ss_pred HHHHCCC-C-EEEEE
T ss_conf 9985756-8-49999
No 194
>pfam11505 DUF3216 Protein of unknown function (DUF3216). This family of archaeal proteins with unknown function appears to be restricted ton Thermococcaceae.
Probab=29.99 E-value=28 Score=12.79 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985033687893789999999999999999
Q gi|254780701|r 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 (495)
Q Consensus 265 ~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~ 302 (495)
.+|.||+|-+....-...+++...+.++.|...-..+.
T Consensus 43 vsIlGFlEGiLttLk~Ky~de~i~~Lle~v~~~R~ele 80 (96)
T pfam11505 43 AGIYGFLEGILTTLKLKHEDEEIEELLNEIKKAREEEE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999986463879999999999999999
No 195
>PRK06227 consensus
Probab=29.91 E-value=28 Score=12.78 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|.+-.|. .|..+.|
T Consensus 216 ~g~peeiA~~v~FL~Sd~as~i-TG~~i~V 244 (256)
T PRK06227 216 VGKPEDVANLCLFLASDEASFI-TGVNFIV 244 (256)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8599999999999967632492-5863896
No 196
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.91 E-value=28 Score=12.78 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
++|.-+..++.=|+|..-.|. .|..|.|
T Consensus 214 ~~p~dva~~v~fL~s~~s~~i-tG~~i~V 241 (247)
T PRK05565 214 GEPEEIAKVVLFLASDDASYI-TGQIITV 241 (247)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 399999999999968622185-6864874
No 197
>PRK12742 oxidoreductase; Provisional
Probab=29.71 E-value=28 Score=12.75 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
+.|.-+-.++.-|.|..-.|.
T Consensus 204 g~p~eia~~v~fL~S~~a~~i 224 (237)
T PRK12742 204 GRPEEVAGMVAWLAGPEASFV 224 (237)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999958653575
No 198
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.68 E-value=28 Score=12.75 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.+..=|.|.+-.|. .|..+.|
T Consensus 220 R~g~peeiA~~v~FLaSd~as~i-TG~~i~V 249 (259)
T PRK07063 220 RIGRPEEVAMTAVFLASDEAPFI-NATCITI 249 (259)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 97789999999999958652582-4871898
No 199
>PRK07707 consensus
Probab=29.67 E-value=28 Score=12.75 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|++-.|. .|..+.|
T Consensus 205 ~g~pediA~~v~FL~S~~a~~i-TG~~l~V 233 (239)
T PRK07707 205 LGLPEEVAKTVSFLLSPGASYI-TGQIISV 233 (239)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8589999999999958722475-1863885
No 200
>TIGR02502 type_III_YscX type III secretion protein, YscX family; InterPro: IPR012672 Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believed to be part of the secretion machinery ..
Probab=29.64 E-value=28 Score=12.74 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999874220015653101199999999999999997311221000367610104798999988777655
Q gi|254780701|r 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 (495)
Q Consensus 306 ~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~ 377 (495)
..|+||++.+-+=..+- +|-|.+.-+++....++..++ .+.+..+........-.-+-.||-|+..||+.
T Consensus 55 q~Ll~fA~P~~~Fh~Ll-Rp~dyRq~l~~tlarl~~ll~-~s~~~~Lq~Aa~lL~~~~~D~rlLqmaLnLLh 124 (126)
T TIGR02502 55 QALLAFAKPQLEFHGLL-RPEDYRQALDNTLARLRQLLQ-ESRSAELQAAAELLKSTQEDERLLQMALNLLH 124 (126)
T ss_pred HHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 99998538874442002-702688999878999999971-89988889999986335704799999998530
No 201
>PRK07074 short chain dehydrogenase; Provisional
Probab=29.55 E-value=28 Score=12.77 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 47989999887776556886067988799999997
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~ 396 (495)
.++|.-+-.++.=|.|-.-.|. .|..+.|.-+++
T Consensus 208 ~g~pedIA~~v~FLaS~~as~i-TG~~i~VDGG~t 241 (256)
T PRK07074 208 FATPDDVANAVLFLASPAARAI-TGVCLPVDGGLT 241 (256)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEECCCHH
T ss_conf 8699999999999958053593-587388588700
No 202
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.35 E-value=27 Score=12.91 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.++.=|.|..-.|. .|..|.|
T Consensus 225 R~g~pediA~~v~fL~Sd~a~~i-tG~~i~V 254 (263)
T PRK08339 225 RLGEPEEIGYLVAFLASDLGSYI-NGAMIPV 254 (263)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98599999999999829442681-4862898
No 203
>PRK06398 aldose dehydrogenase; Validated
Probab=29.13 E-value=28 Score=12.68 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.++.=|.|..-.|. .|..|.|
T Consensus 212 R~g~peeiA~~v~FLaSd~as~i-TG~~i~V 241 (256)
T PRK06398 212 RIGRPEEVASVVAFLASDESSFI-TGTCLYV 241 (256)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 97789999999999948453383-3861778
No 204
>pfam03281 Mab-21 Mab-21 protein.
Probab=28.89 E-value=29 Score=12.64 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899998877765568860679
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
-+..+++++.+||.|||+...-
T Consensus 124 sa~Kils~Fr~LV~~ai~~c~~ 145 (360)
T pfam03281 124 SARKIRSRFQTLVAQACDKCQY 145 (360)
T ss_pred EHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0899999999999998523321
No 205
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=28.84 E-value=29 Score=12.64 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHH-HHHHCC
Q ss_conf 798999988777655-688606
Q gi|254780701|r 363 ADEKGMRQVILNLLS-NAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~-NAiK~T 383 (495)
++|.-+-.++.=|.| .|-.|.
T Consensus 240 g~pedia~~v~fLaS~~as~yi 261 (278)
T PRK08277 240 GKPEELLGTLLWLADEDASSFV 261 (278)
T ss_pred CCHHHHHHHHHHHHCCCHHCCC
T ss_conf 4999999999999098052773
No 206
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=28.83 E-value=29 Score=12.64 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|.+-.|. .|..|.|
T Consensus 231 ~g~peeiA~~v~fLaSd~as~i-TG~~i~V 259 (266)
T PRK06171 231 SGKLSEVADLVCYLLSERASYI-TGVTTNI 259 (266)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7499999999999958552580-5862898
No 207
>PRK12744 short chain dehydrogenase; Provisional
Probab=28.80 E-value=29 Score=12.63 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 989999887776556
Q gi|254780701|r 364 DEKGMRQVILNLLSN 378 (495)
Q Consensus 364 D~~~L~qvl~NLi~N 378 (495)
+|.-+-.++.=|.|+
T Consensus 225 ~pedia~~v~fLaSd 239 (257)
T PRK12744 225 DIEDIVPFIRFLVTD 239 (257)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999999475
No 208
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=28.71 E-value=26 Score=12.96 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEEE------ECCCCEEEEEE
Q ss_conf 9978987854422652315777--678999888058999999996198599997------98995298898
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMANHGGQFLIRS------KLREGVEVIAI 471 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~--~~~~~~GtGLGLaIvk~lve~hgG~i~v~S------~~G~Gt~f~v~ 471 (495)
-||++-.+....+..+.+-..- ..+..-|+|+||.. .-.|....++. ..-.|-+|++.
T Consensus 130 kPG~~~~dv~~~~~~~~~~~g~~~~~~~g~GhgiG~~~-----h~~g~~~~~~~~~~~~~vL~pGMV~tvE 195 (228)
T cd01090 130 KPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLS-----HYYGREAGLELREDIDTVLEPGMVVSME 195 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEECCCCCCEECCCCEEEEC
T ss_conf 69984999999999999974986204655777068647-----7887777753138999784799989999
No 209
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.66 E-value=29 Score=12.62 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+..++.-|.|++-.|. .|..+.|
T Consensus 214 R~g~pedia~~v~fL~S~~s~~i-tG~~i~V 243 (250)
T PRK12939 214 RLQVPDDVAGAVLFLLSDAARFV-TGQLLPV 243 (250)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98099999999999948164690-5882897
No 210
>PRK06138 short chain dehydrogenase; Provisional
Probab=28.52 E-value=29 Score=12.60 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 04798999988777655688606798879999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
-.++|.-+-.++.=|.|.+-.|. .|..+.|.
T Consensus 216 R~g~pedIA~~v~FL~Sd~as~i-TG~~i~VD 246 (252)
T PRK06138 216 RFGTAEEVAQAALFLASDESSFA-TGTTLVVD 246 (252)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEECC
T ss_conf 97889999999999967632593-68748818
No 211
>PRK08267 short chain dehydrogenase; Provisional
Probab=28.32 E-value=29 Score=12.57 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=4.5
Q ss_pred HHCCCCCCEEEEEE
Q ss_conf 86067988799999
Q gi|254780701|r 380 VKFTAIGGRVHVTV 393 (495)
Q Consensus 380 iK~T~~gG~V~v~~ 393 (495)
..+.+. | |+|.+
T Consensus 165 ~El~~~-g-IrVn~ 176 (258)
T PRK08267 165 LEWRRH-G-IRVAD 176 (258)
T ss_pred HHHCCC-C-CEEEE
T ss_conf 984301-9-18999
No 212
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=28.10 E-value=29 Score=12.54 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-.+..=|.|..-.|.
T Consensus 222 g~pedvA~~v~fLaSd~a~~i 242 (256)
T PRK07067 222 GVPDDLTGAALFLASADADYI 242 (256)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 689999999999958643280
No 213
>PRK09242 tropinone reductase; Provisional
Probab=27.80 E-value=30 Score=12.50 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.++.-|.|.+-.|. .|..|.|
T Consensus 221 ~g~pediA~~v~fLaSd~s~~i-TGq~i~V 249 (258)
T PRK09242 221 IGEPEEVAAAVAFLCLPAASYI-TGECIAV 249 (258)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8799999999999958532475-4853898
No 214
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.74 E-value=30 Score=12.49 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 4798999988777655688606
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T 383 (495)
.++|.-+-.++.=|.|.+-.|.
T Consensus 229 ~g~peeiA~~v~FLaSd~ss~i 250 (264)
T PRK12829 229 MVEPEDIAATALFLASPAARYI 250 (264)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 7889999999999958164580
No 215
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=27.74 E-value=30 Score=12.49 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+..++.=|.|++-.|. .|..|.|
T Consensus 223 ~g~pedia~~v~fL~Sd~ssyi-TG~~i~V 251 (259)
T PRK06124 223 WGRPEEIAGAAVFLASPAASYV-NGHVLAV 251 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8599999999999958443586-3853886
No 216
>pfam07492 Trehalase_Ca-bi Neutral trehalase Ca2+ binding domain. Neutral trehalases mobilize trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in neutral trehalase from Schizosaccharomyces pombe have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi.
Probab=27.70 E-value=30 Score=12.49 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=11.8
Q ss_pred ECCCEEEEEEEECCCCC
Q ss_conf 76985999998789978
Q gi|254780701|r 396 TSGRGQYISIKDNGPGI 412 (495)
Q Consensus 396 ~~~~~~~i~V~DtG~GI 412 (495)
+.++...|.|.|+||-.
T Consensus 9 DTD~n~QITIeD~GPKv 25 (30)
T pfam07492 9 DTDGNKQITIEDTGPKV 25 (30)
T ss_pred CCCCCEEEEEECCCCEE
T ss_conf 56887078886389837
No 217
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.55 E-value=30 Score=12.47 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.+..=|.|++-.|. .|..+.|
T Consensus 217 R~g~pediA~~v~fLaSd~s~~i-TG~~i~V 246 (251)
T PRK12827 217 RLGEPDEVAALVAFLVSDAASYV-TGQVIPV 246 (251)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 97789999999999958332496-5864875
No 218
>PRK08278 short chain dehydrogenase; Provisional
Probab=27.53 E-value=30 Score=12.47 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
+-|.-+-....=|.|.+-.|.
T Consensus 217 g~PediA~av~FL~Sd~as~i 237 (273)
T PRK08278 217 RTPEIMADAAHAILTRPAREF 237 (273)
T ss_pred CCHHHHHHHHHHHHCCHHHCC
T ss_conf 788999999999938753285
No 219
>PRK08226 short chain dehydrogenase; Provisional
Probab=27.46 E-value=30 Score=12.46 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.+..=|.|..-.|. .|..|.|
T Consensus 221 ~g~peeiA~~v~FLaSd~a~yi-TG~~i~V 249 (263)
T PRK08226 221 LADPLEVGELAAFLASDESSYL-TGTQNVI 249 (263)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7789999999999958363480-4882885
No 220
>PRK07478 short chain dehydrogenase; Provisional
Probab=27.40 E-value=30 Score=12.45 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 4798999988777655688606798879
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495)
.+.|.-+-.+..-|.|.+-.|. .|..+
T Consensus 217 ~g~peeiA~~v~FLaSd~ss~i-TG~~i 243 (254)
T PRK07478 217 MAQPEEIAQAALFLASDAASFV-TGTAL 243 (254)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEE
T ss_conf 8399999999999958432384-49758
No 221
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.29 E-value=30 Score=12.43 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
++|.-+-+++.-|+++. .|. .|..|.|
T Consensus 221 ~~PeevA~~v~fL~s~~-~fi-tG~vi~v 247 (251)
T PRK06924 221 LSPEYVAGALRNLLETE-DFP-NGEVYDI 247 (251)
T ss_pred CCHHHHHHHHHHHHCCC-CCC-CCCEEEE
T ss_conf 79999999999997789-999-9877751
No 222
>pfam02675 AdoMet_dc S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity.
Probab=26.95 E-value=31 Score=12.39 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=44.7
Q ss_pred CCHHCCCCHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCCEEEEEEEECCCCCCHHHHH
Q ss_conf 61010479899998877765568---------8606798---------87999999976985999998789978987854
Q gi|254780701|r 357 SLSSVWADEKGMRQVILNLLSNA---------VKFTAIG---------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 (495)
Q Consensus 357 ~~~~v~~D~~~L~qvl~NLi~NA---------iK~T~~g---------G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~ 418 (495)
..+.+..|+..+++++.+.+.-+ -||.|.| +.|.++. |-+.+.+.+.|-==|.+..|+..-
T Consensus 9 c~~~~L~d~~~i~~~l~~a~~~~~~tvl~~~~~~f~p~Gvt~v~ll~ESHisiHT-wPE~g~aaiDiftCg~~~~p~~a~ 87 (107)
T pfam02675 9 CDADLLNDAERLERILREAAKAAGATLLGIAFHKFEPQGVSGVALLAESHISIHT-WPEYGYAAVDVFTCGEHADPWKAL 87 (107)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEE-CCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 8846787999999999999998799899999897599988999992266389998-268893899997178989999999
Q ss_pred HHCCCCCCC
Q ss_conf 422652315
Q gi|254780701|r 419 TVLTSFGQG 427 (495)
Q Consensus 419 ~iF~~F~r~ 427 (495)
.....+++.
T Consensus 88 ~~l~~~f~~ 96 (107)
T pfam02675 88 EYLKEALKP 96 (107)
T ss_pred HHHHHHHCC
T ss_conf 999997299
No 223
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=26.91 E-value=31 Score=12.38 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999731122100036761010479899998877765568860
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~ 382 (495)
+..+.+.+...++..++++|+++.++.....+.+..|+. +.+++.+|.+-
T Consensus 296 l~~~~~~i~~~~~~ia~~~g~~~~~~~~~~~~pv~~d~~-----l~~~~~~aa~~ 345 (408)
T PRK12893 296 LDAMEAEIRAACAEIAAARGVEITVETVWDFPPVPFDPA-----LVALVRQAAEA 345 (408)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHH-----HHHHHHHHHHH
T ss_conf 999999999999999987197499999983798678999-----99999999997
No 224
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=26.86 E-value=31 Score=12.38 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 9899998877765568860
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~ 382 (495)
+|.-+-.+..=|+|+.-.|
T Consensus 228 ~peevA~~v~fL~S~~s~~ 246 (260)
T PRK12823 228 TIDEQVAAILFLASDEASY 246 (260)
T ss_pred CHHHHHHHHHHHHCCHHCC
T ss_conf 9999999999995854248
No 225
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.79 E-value=31 Score=12.37 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 9899998877765568860
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~ 382 (495)
+|.-+-.++.=|.|.+-+|
T Consensus 220 ~pedvA~~v~fL~Sd~a~~ 238 (254)
T PRK07533 220 DIDDVGAVAAFLASDAARA 238 (254)
T ss_pred CHHHHHHHHHHHHCCHHCC
T ss_conf 9999999999995883248
No 226
>PRK08265 short chain dehydrogenase; Provisional
Probab=26.69 E-value=31 Score=12.35 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 047989999887776556886067988799999997
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~ 396 (495)
-.++|.-+..++.-|.|+.-.|. .|..|.|.-+++
T Consensus 211 R~g~p~dIa~~v~fL~Sd~a~~i-TGq~i~VDGG~s 245 (261)
T PRK08265 211 RVGDPEEVAQVVAFLCSDAASFV-TGADYAVDGGYS 245 (261)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEECCCCC
T ss_conf 97589999999999967742383-597087281901
No 227
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=26.66 E-value=31 Score=12.35 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.+.|.-+-.++.=|.|.+-.|. .|..|.|
T Consensus 209 R~g~peevA~~v~FL~Sd~a~~i-TG~~i~V 238 (245)
T PRK12824 209 RLGTPEEIAAAVAFLVSEAAGFI-TGETISI 238 (245)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98789999999999958632584-1853797
No 228
>KOG0147 consensus
Probab=26.55 E-value=31 Score=12.33 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 85442265231577767899988805899999999---61985999979899529889847
Q gi|254780701|r 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA---NHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 416 ~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve---~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
.+...|+|=. +.--++-..|...++| .|||-+.|-=.++.--++.|.+|
T Consensus 447 lL~nMFdpst---------ete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~ 498 (549)
T KOG0147 447 LLSNMFDPST---------ETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCP 498 (549)
T ss_pred HHHHCCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECC
T ss_conf 8764279643---------567661167899999999732884589974677735999667
No 229
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.39 E-value=31 Score=12.31 Aligned_cols=24 Identities=17% Similarity=0.428 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7989999887776556886067988
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
++|.-+-.++.=|.|+.-.|. .|.
T Consensus 215 g~pediA~~v~fLaSd~a~~i-TG~ 238 (254)
T PRK06463 215 GKPEDIANIVLFLASDDARYI-TGQ 238 (254)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCC
T ss_conf 199999999999958442491-586
No 230
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=26.37 E-value=31 Score=12.31 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|+.-.|. .|..|.|
T Consensus 211 ~g~p~diA~~v~fL~S~~a~yi-TG~~i~V 239 (246)
T PRK12938 211 LGSPEEIGSIVAWLASEESGFS-TGADFSL 239 (246)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8499999999999948143596-4872887
No 231
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=26.34 E-value=31 Score=12.30 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9999999999988999997764201389999999-99850336878937899999999999999999999-999998742
Q gi|254780701|r 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFS-EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN-EILDLSRIE 315 (495)
Q Consensus 238 a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~-elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~-~lLdlsrle 315 (495)
-++|-|--...-..||+..+.||--|.-.+.--+ +.|++-.. | -+.++ +++-+++|..|-. +..+.+-++
T Consensus 308 LrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~L~~~~W-P---GNVR~----LEN~cR~l~~la~~~~v~~~d~~ 379 (471)
T TIGR01818 308 LRERREDIPRLARHFLALAAKELDVEPKLLSPEALEALKRYDW-P---GNVRE----LENVCRRLTVLASGDEVLVSDLP 379 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-C---CCHHH----HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 2122668999999999998874286511348899999972588-9---85245----77899999873467646777757
Q ss_pred HHC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 200-------156531011999999999999999973112210003676101047989999887776556886067988
Q gi|254780701|r 316 AGR-------YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 316 ag~-------~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
+.- .......+ -.+-.+..+..+...+-.++ ..+.|.-.--..-+..+=.-||+-|+++| .|-
T Consensus 380 ~eLA~~~~~~~~~~~~~~-~~~~w~~~l~~~~~~~~~~~-------~~G~P~~~L~~~~~~~~er~Ll~~AL~~T-~G~ 449 (471)
T TIGR01818 380 AELALSERKASAPDSDAV-QQDDWEEALEAWAKQALSSG-------KDGVPEQGLLDEALPELERTLLEAALQHT-RGR 449 (471)
T ss_pred HHHCCCCCCHHCCHHCCC-CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 655677631010001022-03469999999999986214-------56788166899999987399999999734-550
No 232
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.32 E-value=31 Score=12.30 Aligned_cols=31 Identities=13% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 04798999988777655688606798879999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
-+++|.-+-.++.-|.|+.-.|. .|..|.|.
T Consensus 221 R~g~p~dia~~v~fL~S~~a~yi-TGq~i~VD 251 (259)
T PRK12745 221 RWGEPEDVAATVAALAEGKLIYT-TGQAIAID 251 (259)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCC-CCCEEEEC
T ss_conf 97799999999999967800487-58838889
No 233
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=26.13 E-value=32 Score=12.28 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=9.2
Q ss_pred HHHHHHHHHH-HHHCCCCCCEEEEEE
Q ss_conf 9887776556-886067988799999
Q gi|254780701|r 369 RQVILNLLSN-AVKFTAIGGRVHVTV 393 (495)
Q Consensus 369 ~qvl~NLi~N-AiK~T~~gG~V~v~~ 393 (495)
+-.+.+|..+ |..+-+. | |+|-+
T Consensus 166 Kaal~~ltr~lA~ela~~-g-IrVN~ 189 (259)
T PRK07370 166 KAALEASVRYLAAELGPE-N-IRVNA 189 (259)
T ss_pred HHHHHHHHHHHHHHHCCC-C-EEEEE
T ss_conf 999999999999983718-8-79999
No 234
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=25.98 E-value=32 Score=12.26 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 87776556886067988799999997698599999878997898785442265231
Q gi|254780701|r 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 371 vl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
.-.-+++|-|--|| |.+++.... +++..+|.+.|-=- +++..+.|-++|.+
T Consensus 101 ~~~t~La~~ITLTP--GT~slD~~~-d~~~l~VH~id~~~--~~~~~~~I~~~~E~ 151 (158)
T COG1863 101 LAITLLANSITLTP--GTLTLDVSD-DRKYLYVHAIDVED--KEAARESIKNRFEK 151 (158)
T ss_pred HHHHHHHHHEECCC--CEEEEEECC-CCCEEEEEECCCCC--HHHHHHHHHHHHHH
T ss_conf 89999987104679--728997548-88679999768998--68999998788999
No 235
>pfam09474 Type_III_YscX Type III secretion system YscX (type_III_YscX). Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believed to be part of the secretion machinery.
Probab=25.84 E-value=32 Score=12.24 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~ 377 (495)
-++|++|..-|-.++ .+|.|.+.-++++...+ +++-+-.+........-+-+-.++-|+-.||+.
T Consensus 55 ~Ll~fa~P~~~f~~L-lRP~dfrq~~~~Lr~ll-----q~~~s~~l~~A~~lL~~~~~DerllqMaLnLLh 119 (121)
T pfam09474 55 ALLDFARPQLTFHGL-LRPGDFRQALDTLRLLL-----QESGSPELQAAAELLESMQEDERLLQMALNLLH 119 (121)
T ss_pred HHHHHCCCCCCHHHH-CCHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999873866545753-38188999999999999-----738989999999999987377999999999984
No 236
>pfam05848 CtsR Firmicute transcriptional repressor of class III stress genes (CtsR). This family consists of several Firmicute transcriptional repressor of class III stress genes (CtsR) proteins. CtsR of L. monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon.
Probab=25.84 E-value=32 Score=12.24 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEE---
Q ss_conf 19999999999999999731122100036761010479899998877765568860679887999999976985999---
Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--- 403 (495)
Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i--- 403 (495)
++.++++.-...+-. +..+-.+.+.-.+-.-...|=|.++-=|+. -+||++.|- .|.-++-++|..+|
T Consensus 2 nlSD~IE~yiK~ll~--~s~~~~ieI~R~eLA~~F~CvPSQINYVl~------TRFT~e~GY-~VESkRGGGGyIRI~kv 72 (151)
T pfam05848 2 NISDIIEEYLKQLLA--QSEDEVIEIKRSELADQFNCVPSQINYVIN------TRFTIERGY-IVESKRGGGGYIRIVKV 72 (151)
T ss_pred CHHHHHHHHHHHHHH--HCCCCEEEEEHHHHHHHCCCCHHHCEEEEE------EEECCCCCE-EEEEECCCCCEEEEEEE
T ss_conf 657899999999997--387883997589989871977135126765------334266754-99863278866999995
Q ss_pred EEEEC-----------CCCCCHHHHHHHCCCCCCCCC
Q ss_conf 99878-----------997898785442265231577
Q gi|254780701|r 404 SIKDN-----------GPGIAEGEIPTVLTSFGQGSI 429 (495)
Q Consensus 404 ~V~Dt-----------G~GI~~e~~~~iF~~F~r~~~ 429 (495)
...|. |..|...+-..+.+..+.-+-
T Consensus 73 ~~~~~~~~~~~l~~~ig~~is~~~a~~ii~~L~e~~~ 109 (151)
T pfam05848 73 EFSDDHDLLDQLIQLIGDSISQQNAEDIIQRLLEEEV 109 (151)
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 2587189999999986463689999999999998699
No 237
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=25.73 E-value=32 Score=12.22 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 47989999887776556886067988799
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.++|.-+-.++.-|.|+.-.|. .|..|.
T Consensus 217 ~~~p~eiA~~v~fL~S~~s~~i-tG~~i~ 244 (253)
T PRK12826 217 LGEPEDIAAAVLFLASDAARYI-TGQTLP 244 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf 8599999999999968632295-687388
No 238
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.68 E-value=32 Score=12.21 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 47989999887776556886067988799
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.++|.-+-.++.=|.|..-.|. .|..|.
T Consensus 216 ~~~p~dia~~v~fL~S~~s~~i-tG~~i~ 243 (250)
T PRK07231 216 LGTPEDIANAAAFLASDEASFI-TGVALE 243 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf 8199999999999968533294-687188
No 239
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.66 E-value=32 Score=12.21 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.6
Q ss_pred HCCCCCCEEEEEE
Q ss_conf 6067988799999
Q gi|254780701|r 381 KFTAIGGRVHVTV 393 (495)
Q Consensus 381 K~T~~gG~V~v~~ 393 (495)
.+.+. | |+|.+
T Consensus 165 El~~~-g-I~V~~ 175 (243)
T PRK07102 165 RLFKS-G-VHVLT 175 (243)
T ss_pred HHHCC-C-EEEEE
T ss_conf 85020-9-19999
No 240
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811 Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose..
Probab=25.65 E-value=32 Score=12.21 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999999999999999999999999
Q gi|254780701|r 285 ETYKEYIGDIHRSGQHLLNLINEILDL 311 (495)
Q Consensus 285 ~~~~~~l~~i~~s~~~L~~Li~~lLdl 311 (495)
..++..++.+....+|+..++++=.|-
T Consensus 348 ~~~~~~~~~~~~q~~r~~~~La~~~~~ 374 (568)
T TIGR02457 348 ADARSWVQDMKAQLERALELLAESRDG 374 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 889999999999999999999987605
No 241
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=25.50 E-value=29 Score=12.66 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH-----H-HHHHHHHHHCCCEE
Q ss_conf 999878997898785442265231577767899988805-----8-99999999619859
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG-----L-PIAQSIMANHGGQF 456 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG-----L-aIvk~lve~hgG~i 456 (495)
|.+.--=|||.+|-..-..+.=||+ =--+|+||| . +|-.+|-|++.--|
T Consensus 222 V~lik~yPGl~~di~~~~~~~~YkG-----iViegtG~G~~P~~~R~~l~~~~ea~d~Gv 276 (347)
T TIGR00519 222 VALIKLYPGLSPDIIRAYLSKGYKG-----IVIEGTGLGHVPQELRDILSKLQEAIDSGV 276 (347)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCEE-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCE
T ss_conf 4899866898889999862699348-----998204678883568899998776322871
No 242
>PRK06701 short chain dehydrogenase; Provisional
Probab=25.43 E-value=32 Score=12.18 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.++.=|.|++-+|. .|..|.|
T Consensus 252 R~g~peDIA~~v~fLaSd~ss~i-TGq~i~V 281 (289)
T PRK06701 252 RPGQPEELAPAYVYLASPDSSYI-TGQMLHV 281 (289)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98099999999999957411485-4868996
No 243
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.43 E-value=32 Score=12.18 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+-....=|.|.+-.|+
T Consensus 215 g~peeia~~v~fL~S~~as~i 235 (249)
T PRK06500 215 GTPEEIAKAVVFLASDESAFI 235 (249)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 599999999999958742281
No 244
>PRK06125 short chain dehydrogenase; Provisional
Probab=25.41 E-value=32 Score=12.18 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4798999988777655688606798879999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.++|.-+-.++.=|.|..-.|. .|..|.|.
T Consensus 221 ~g~peeiA~~v~fLaSd~ss~i-tG~~i~vD 250 (259)
T PRK06125 221 PATPREVADLVAFLASPRSGYT-SGTVVTVD 250 (259)
T ss_pred CCCHHHHHHHHHHHHCHHHCCC-CCCEEEEC
T ss_conf 7889999999999958053685-38527868
No 245
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.34 E-value=33 Score=12.17 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 798999988777655
Q gi|254780701|r 363 ADEKGMRQVILNLLS 377 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~ 377 (495)
+.|.-+-++..=|.|
T Consensus 213 ~~peeia~~v~fLas 227 (249)
T PRK06077 213 LDPEDVAELVWALVK 227 (249)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 399999999999964
No 246
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.86 E-value=33 Score=12.10 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus 212 ~~~p~dia~~v~fL~S~~s~~i-tG~~i~v 240 (246)
T PRK05653 212 LGTPEEVANAVAFLASDAASYI-TGQVIPV 240 (246)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8399999999999968711283-5874887
No 247
>PRK05867 short chain dehydrogenase; Provisional
Probab=24.77 E-value=33 Score=12.09 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|++-.|. .|..+.|
T Consensus 218 ~g~pediA~~v~fLaSd~s~~i-TG~~i~V 246 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSYM-TGSDIVI 246 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8299999999999938721485-4871885
No 248
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.75 E-value=33 Score=12.08 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 999887776556886067988799999
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
-+.+...+| |..|-+. | |+|-+
T Consensus 165 al~~ltr~l---A~e~a~~-g-IRVN~ 186 (271)
T PRK06505 165 ALEASVRYL---AADYGPQ-G-IRVNA 186 (271)
T ss_pred HHHHHHHHH---HHHHHHC-C-EEEEE
T ss_conf 799999999---9997023-9-89999
No 249
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=24.74 E-value=33 Score=12.08 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.-|.|.+-+|. .|..|.|
T Consensus 216 ~g~pediA~~v~fL~Sd~s~~i-tG~~i~V 244 (250)
T TIGR03206 216 LGQPDDLPGAILFFSSDDASFI-TGQVLSV 244 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8399999999999958343384-5883886
No 250
>pfam07165 DUF1397 Protein of unknown function (DUF1397). This family consists of several insect specific proteins. A sequence from Manduca sexta is annotated as being a haemolymph glycoprotein precursor. The function of this family is unknown.
Probab=24.70 E-value=33 Score=12.08 Aligned_cols=20 Identities=20% Similarity=0.695 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHHHHHC
Q ss_conf 79899998877765568860
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~ 382 (495)
.++.....++.|++.+++.|
T Consensus 98 ~ee~~~~~~~~~i~~~ll~f 117 (216)
T pfam07165 98 EEEREIKDVVVNIIPELLNF 117 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999888
No 251
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.62 E-value=33 Score=12.07 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=4.9
Q ss_pred HHCCCCCCEEEEEE
Q ss_conf 86067988799999
Q gi|254780701|r 380 VKFTAIGGRVHVTV 393 (495)
Q Consensus 380 iK~T~~gG~V~v~~ 393 (495)
..+-|. | |+|-+
T Consensus 173 ~ela~~-g-IRVN~ 184 (252)
T PRK06079 173 RDLGKK-G-IRVNA 184 (252)
T ss_pred HHHHCC-C-EEEEE
T ss_conf 998438-9-89999
No 252
>PRK07775 short chain dehydrogenase; Provisional
Probab=24.59 E-value=33 Score=12.06 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=5.5
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 789878544226523
Q gi|254780701|r 411 GIAEGEIPTVLTSFG 425 (495)
Q Consensus 411 GI~~e~~~~iF~~F~ 425 (495)
.++++......+.+.
T Consensus 199 ~~~~~~~~~~~~~~~ 213 (275)
T PRK07775 199 SLPAEQIGPALEDWA 213 (275)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 878666405778888
No 253
>PRK09730 hypothetical protein; Provisional
Probab=24.59 E-value=33 Score=12.06 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 798999988777655688606798879
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495)
++|.-+-+.+.=|.|+.-+|. .|..|
T Consensus 216 g~pedia~~v~fL~Sd~a~~i-TGq~i 241 (247)
T PRK09730 216 GQAEEVAQAIVWLLSDKASYV-TGSFI 241 (247)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEE
T ss_conf 499999999999968722483-48347
No 254
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.52 E-value=34 Score=12.05 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 047989999887776556886067988799999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
-.++|.-+..++.=|.|.+-.|. .|..|.|.=
T Consensus 218 R~g~pedia~~v~FL~Sd~s~~i-TG~~i~VDG 249 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPAGSYL-TGKTLEVDG 249 (263)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEECC
T ss_conf 98099999999999948432594-488288687
No 255
>pfam08066 PMC2NT PMC2NT (NUC016) domain. This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components.
Probab=24.47 E-value=34 Score=12.04 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999987422
Q gi|254780701|r 289 EYIGDIHRSGQHLLNLINEILDLSRIEA 316 (495)
Q Consensus 289 ~~l~~i~~s~~~L~~Li~~lLdlsrlea 316 (495)
++-+.+.++++||..++|++|...-...
T Consensus 25 ~~~~~ld~~s~rLl~l~n~ll~~~~~~~ 52 (91)
T pfam08066 25 EFSQSLDEQSQRLLSLINDLLQSAGSKS 52 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999999999999999999998447667
No 256
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=24.41 E-value=34 Score=12.04 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|++-.|. .|..|.|
T Consensus 218 ~g~peeiA~~v~fL~S~~a~~i-TG~~i~V 246 (253)
T PRK08993 218 WGLPSDLMGPVVFLASSASDYI-NGYTIAV 246 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8199999999999958432282-5853898
No 257
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.98 E-value=34 Score=11.97 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHHCC------CCCCEEEEEEEEECCCEEEEE-EEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 98999988777655688606------798879999999769859999-9878997898785442265231577
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFT------AIGGRVHVTVGWTSGRGQYIS-IKDNGPGIAEGEIPTVLTSFGQGSI 429 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~T------~~gG~V~v~~~~~~~~~~~i~-V~DtG~GI~~e~~~~iF~~F~r~~~ 429 (495)
.|.-+-.++.=|.|-+-+|- -.||.|.+--.| .... +...|-+-.++++...+.+++....
T Consensus 221 ~PeeVA~~v~fLaSd~as~ITGq~l~VdGG~v~~~~~~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 288 (303)
T PRK07792 221 SPEHVVTLVQFLASPAAAGVNGQLFIVYGPQVTLVAAP-----TAERRFSADGDAWDPAELSATLRDYFADRD 288 (303)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCC-----EECCEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999739100698798799869999973387-----444405368997799999999999984269
No 258
>PRK07479 consensus
Probab=23.90 E-value=34 Score=11.96 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 47989999887776556886067988799
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
.++|.-+-+++.-|+|..-.|. .|..|.
T Consensus 218 ~g~pedia~~v~fL~S~~s~~i-TGq~i~ 245 (252)
T PRK07479 218 FSTPQDVANAALYLASDEASFI-TGVCLE 245 (252)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf 8099999999999968443294-688188
No 259
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=23.78 E-value=35 Score=11.94 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC--CEEEEEEEECCC----CCCHHHHHHHCCCCCCCCCCCCCCC--CCC
Q ss_conf 99988777655688606798879999999769--859999987899----7898785442265231577767899--988
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGP----GIAEGEIPTVLTSFGQGSIAIKSAE--QGV 438 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~--~~~~i~V~DtG~----GI~~e~~~~iF~~F~r~~~~~~~~~--~Gt 438 (495)
..||-|...|.+ ||.+.+|.+.+-. .+++ +...=++++++. .++|+..+++.+...+.-....+.. -.-
T Consensus 556 ~VR~aL~r~I~~--~~~~~~~~L~Vit-L~p~lE~~l~~si~~~~~g~~l~L~p~~~~~l~~~v~~~~~~~~~~VLlvs~ 632 (681)
T PRK12720 556 YVRIALRRHILR--RLNPEGKWIPVLR-IGEGIENLVRESIRQTAMGTYSALSSRHKTQILQLIEQALAESQKLVLVTSV 632 (681)
T ss_pred HHHHHHHHHHHH--HHCCCCCEEEEEE-ECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 999999999999--8558997369999-6889999999997513688766889899999999999999705986999186
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 8058999999996198599997989952
Q gi|254780701|r 439 GLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 439 GLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
.+= .-.|++++.+..++.|=|--.-..
T Consensus 633 ~iR-r~lr~lle~~~p~l~VLSy~EI~~ 659 (681)
T PRK12720 633 DVR-RFLRKITERTLFDVPVLSWQELGE 659 (681)
T ss_pred HHH-HHHHHHHHHHCCCCEEECHHHCCC
T ss_conf 567-999999997689986971321599
No 260
>PRK06181 short chain dehydrogenase; Provisional
Probab=23.75 E-value=35 Score=11.94 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=6.8
Q ss_pred CCCCCCHHHHHH-HCCCC
Q ss_conf 899789878544-22652
Q gi|254780701|r 408 NGPGIAEGEIPT-VLTSF 424 (495)
Q Consensus 408 tG~GI~~e~~~~-iF~~F 424 (495)
.|.+++||+..+ |.+..
T Consensus 206 ~~~~~~pe~vA~~i~~ai 223 (263)
T PRK06181 206 EGKIMSAEECAEMMLPAI 223 (263)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 567899999999999999
No 261
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis protein PqqF; InterPro: IPR011844 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of metallopeptidases belong to MEROPS peptidase family M16, subfamily M16A (clan ME). In the subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (IPR011725 from INTERPRO), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases .; GO: 0008234 cysteine-type peptidase activity, 0008270 zinc ion binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=23.63 E-value=18 Score=14.47 Aligned_cols=56 Identities=11% Similarity=-0.077 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCHH-------CCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999973112210003676101-------047989999887776556886067988
Q gi|254780701|r 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-------VWADEKGMRQVILNLLSNAVKFTAIGG 387 (495)
Q Consensus 331 li~~~~~~~~~~A~~~~~~l~~~~~~~~~~-------v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495)
-..+-...+...+...|+++..+...+. | --.++..+.+-+.-+-.|+=.+..+++
T Consensus 494 ~l~~~LrPL~~~aR~AGv~~~~~~~g~~-W~L~L~gp~~~~~A~~~~~l~~l~~a~P~~~~~~~ 556 (737)
T TIGR02110 494 ALRRQLRPLLADARHAGVELEFEALGED-WQLKLNGPRSPMRAVVSLALALLALAAPSLAQEAA 556 (737)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHCCCH
T ss_conf 9986314689998504833111211642-12220487977727899999997268872021520
No 262
>PRK06346 consensus
Probab=23.63 E-value=35 Score=11.92 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
++|.-+-.+..-|.|.+-.|. .|..|.|
T Consensus 218 g~pediA~~v~fL~Sd~s~~i-TG~~i~V 245 (251)
T PRK06346 218 GQAEEIAQVALFLASDDASFV-NGTVITA 245 (251)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEC
T ss_conf 689999999999957153593-6862880
No 263
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.55 E-value=35 Score=11.91 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-..+.=|.|++-+|. .|..|.|
T Consensus 220 ~g~pediA~~v~fL~Sd~s~~i-TGq~i~V 248 (256)
T PRK08594 220 TTTQEEVGDTAAFLFSDLSRGV-TGENIHV 248 (256)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 9699999999999958452485-5872897
No 264
>PRK05716 methionine aminopeptidase; Validated
Probab=23.46 E-value=14 Score=15.21 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=6.0
Q ss_pred CCCCEEEEEE
Q ss_conf 8995298898
Q gi|254780701|r 462 LREGVEVIAI 471 (495)
Q Consensus 462 ~G~Gt~f~v~ 471 (495)
...|-+|++.
T Consensus 193 Le~GMV~tiE 202 (252)
T PRK05716 193 LKEGMVFTIE 202 (252)
T ss_pred CCCCCEEEEE
T ss_conf 5698289981
No 265
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785 Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=23.38 E-value=26 Score=13.06 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHC
Q ss_conf 731122100036761010479-899998877765568860
Q gi|254780701|r 344 QEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 344 ~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~ 382 (495)
..++..+.- ....|.-..| |..=.||.....+|+..+
T Consensus 22 ~~~g~kvid--~GT~~~ertdYP~YAk~V~~av~~g~~~~ 59 (143)
T TIGR01120 22 EDKGFKVID--VGTLASERTDYPDYAKEVVRAVLEGKAER 59 (143)
T ss_pred CCCCEEEEE--ECCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 139857987--53788676366068999999974487667
No 266
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=23.34 E-value=35 Score=11.88 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999973112210003676101047989999887776556886
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK 381 (495)
+..+.+.+.+.+...++++|+++.++..-..+.+..|+... +++..+.+
T Consensus 295 l~~~~~~i~~~~~~ia~~~g~~~e~~~~~~~~pv~~d~~l~-----~~~~~aa~ 343 (412)
T PRK09290 295 LDAMVAELRAAAEAIAARRGVGIEIELISDFAPVPFDPALV-----AALERAAE 343 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHH-----HHHHHHHH
T ss_conf 99999999999999999729769999998359856799999-----99999999
No 267
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.32 E-value=35 Score=11.88 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 98999988777655688606
Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 364 D~~~L~qvl~NLi~NAiK~T 383 (495)
.|.-+-.+..=|+|+.-+|.
T Consensus 221 ~peeiA~~v~FL~Sd~as~i 240 (260)
T PRK06997 221 TIEQVGNVAAFLLSDLASGV 240 (260)
T ss_pred CHHHHHHHHHHHHCCHHCCC
T ss_conf 99999999999958353370
No 268
>PRK08643 acetoin reductase; Validated
Probab=23.29 E-value=35 Score=11.87 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-+...-|.|+.-+|. .|..|.|
T Consensus 220 R~g~pedia~~v~fL~S~~s~~i-TG~~i~V 249 (256)
T PRK08643 220 RLSEPEDVANVVSFLAGPDSDYI-TGQTIIV 249 (256)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98689999999999959353693-5875996
No 269
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.24 E-value=35 Score=11.87 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
+++|.-+-.+..=|.|..-.|. .|..|.|
T Consensus 210 ~g~peeiA~~v~fL~S~~ss~i-TG~~i~V 238 (245)
T PRK07060 210 FAEVDDVAAPILFLLSDAASMV-SGVSLPV 238 (245)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 7889999999999958642581-4842886
No 270
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.20 E-value=35 Score=11.86 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHHHHHHC
Q ss_conf 79899998877765568860
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~ 382 (495)
++|.-+-.++.=|.|..-.|
T Consensus 224 g~p~diA~~v~fL~Sd~a~~ 243 (258)
T PRK07890 224 PTDDEVASAVLFLASDLASA 243 (258)
T ss_pred CCHHHHHHHHHHHHCCHHCC
T ss_conf 79999999999995853239
No 271
>PRK06182 short chain dehydrogenase; Validated
Probab=23.17 E-value=35 Score=11.86 Aligned_cols=14 Identities=7% Similarity=-0.201 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 11999999999999
Q gi|254780701|r 326 ISLIDIVRECIIML 339 (495)
Q Consensus 326 v~L~~li~~~~~~~ 339 (495)
.+...+.+.+....
T Consensus 221 ~~p~~vA~~i~~a~ 234 (273)
T PRK06182 221 SPPQVIADAISKAV 234 (273)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999998
No 272
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=23.06 E-value=36 Score=11.84 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999988999
Q gi|254780701|r 238 TRKRAEEENLAKSRFL 253 (495)
Q Consensus 238 a~~~ae~a~~~Ks~Fl 253 (495)
.+..+|+.|..|.+||
T Consensus 283 mk~~a~eL~~~K~~fL 298 (340)
T TIGR03575 283 LKLLAEELNKLKADFL 298 (340)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 273
>PRK11728 hypothetical protein; Provisional
Probab=22.98 E-value=36 Score=11.83 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4798999988777
Q gi|254780701|r 362 WADEKGMRQVILN 374 (495)
Q Consensus 362 ~~D~~~L~qvl~N 374 (495)
..|+..+.+-+..
T Consensus 145 ivD~~~l~~al~~ 157 (400)
T PRK11728 145 IVDYRAVAEAMAE 157 (400)
T ss_pred EECHHHHHHHHHH
T ss_conf 7789999999999
No 274
>pfam00766 ETF_alpha Electron transfer flavoprotein FAD-binding domain. This domain found at the C-terminus of electron transfer flavoprotein alpha chain and binds to FAD. The fold consists of a five-stranded parallel beta sheet as the core of the domain, flanked by alternating helices. A small part of this domain is donated by the beta chain.
Probab=22.79 E-value=36 Score=11.80 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=17.8
Q ss_pred CCCCCH----HHHHHHHHHHCCCEEEEEEEC
Q ss_conf 988805----899999999619859999798
Q gi|254780701|r 436 QGVGLG----LPIAQSIMANHGGQFLIRSKL 462 (495)
Q Consensus 436 ~GtGLG----LaIvk~lve~hgG~i~v~S~~ 462 (495)
.|-|+| +.++++|++.+|+.+.. |+|
T Consensus 13 ~GrG~~~~e~~~~~~~LA~~lga~vg~-SRp 42 (86)
T pfam00766 13 GGRGLGSKENFKLLEELADVLGAEVGA-SRP 42 (86)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE-CHH
T ss_conf 588769988889999999986992141-368
No 275
>PRK06720 hypothetical protein; Provisional
Probab=22.71 E-value=36 Score=11.79 Aligned_cols=11 Identities=18% Similarity=0.127 Sum_probs=4.9
Q ss_pred CCCHHHHHHHC
Q ss_conf 78987854422
Q gi|254780701|r 411 GIAEGEIPTVL 421 (495)
Q Consensus 411 GI~~e~~~~iF 421 (495)
..++|+..+++
T Consensus 111 ~~~~e~~~~v~ 121 (169)
T PRK06720 111 SRQQENDSNVL 121 (169)
T ss_pred CCCHHHHHHHH
T ss_conf 17989999999
No 276
>pfam10638 Sfi1_C Spindle body associated protein C-terminus. This C-terminal domain of spindle-body-associated protein Sfi1 has an important role to play in the bridge-splitting during bi-polar spindle assembly, and this separation event possibly requires interaction with integral components of the nuclear envelope, such as the Mps2-Bbp1 complex. Centrally to this domain is a region carrying centrin-binding repeats with repeating units containing tryptophan, family Sfi1_central, pfam08457.
Probab=22.47 E-value=19 Score=14.11 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99776420138999999999850336878937899999999999999999999999998742200156531011999999
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~ 333 (495)
++.||||.||+-. --+... ..- ..|..+. .+|..+=| .++|.- ..-+-|+--..+++
T Consensus 3 ~~~~~el~TP~k~-~~~~~~---TIP---GSErvK~---------~rmea~k~---~YsrAr----raIPSPIKsS~vLd 59 (108)
T pfam10638 3 ASLSHELDTPMKS-PHFAAS---TIP---GSERVKK---------YRMEAIKN---RYSRAR----RAIPSPIKSSSVLD 59 (108)
T ss_pred CCCHHHHCCCCCC-CCCCCC---CCC---CHHHHHH---------HHHHHHHH---HHHHHH----HHCCCCCCHHHHHH
T ss_conf 5520121475558-976664---376---2578999---------89999999---999988----50698520245676
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997311221000367610104798999988777655
Q gi|254780701|r 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 (495)
Q Consensus 334 ~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~ 377 (495)
.++..--.. +-...+.-.+..|.- ...|+++-.||-+
T Consensus 60 St~K~rl~~----~~~~~~~~~~t~~~p---~~~l~~~nK~las 96 (108)
T pfam10638 60 STVKRRLSV----SNPYYLNDENTTGMP---AEYLEEQNKNLAS 96 (108)
T ss_pred HHHHHHHCC----CCCCCCCCCCCCCCH---HHHHHHHHHHHHH
T ss_conf 899998511----253434689899744---5639999777642
No 277
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family; InterPro: IPR006532 The proteins contain three RNA recognition motifs and have been characterised as poly-pyrimidine tract binding proteins associated with RNA splicing factors , , . In the case of PUF60, in complex with p54, and in the presence of U2AF, it facilitates association of U2 snRNP with pre-mRNA . .
Probab=22.44 E-value=36 Score=11.75 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCC------CCCCCCCCCCC
Q ss_conf 99987899789878544226523157------77678999888
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGS------IAIKSAEQGVG 439 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~------~~~~~~~~GtG 439 (495)
|.|.==-|=.+++|+..|||.|..+- .++.+.++|.|
T Consensus 244 iyVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGfG 286 (791)
T TIGR01645 244 IYVASVHPDLSEEDIKSVFEAFGEIVKCKLARAPTGRKHKGFG 286 (791)
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 7988516888712121143214864023404677888854310
No 278
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family; InterPro: IPR012647 Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defence of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins. .
Probab=22.39 E-value=36 Score=11.74 Aligned_cols=18 Identities=11% Similarity=0.208 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 479899998877765568
Q gi|254780701|r 362 WADEKGMRQVILNLLSNA 379 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NA 379 (495)
..++..|.+-|.|....=
T Consensus 394 ~~~~~~l~r~l~~~~~~~ 411 (421)
T TIGR02307 394 VDDRKVLKRSLVFIAEEL 411 (421)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 357347889999999997
No 279
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=22.35 E-value=37 Score=11.73 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=50.0
Q ss_pred HCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHH---------HHCCCCC---------CEEEEEEEEECCCEEEEEEE
Q ss_conf 31122100036761010479899998877765568---------8606798---------87999999976985999998
Q gi|254780701|r 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA---------VKFTAIG---------GRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 345 ~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NA---------iK~T~~g---------G~V~v~~~~~~~~~~~i~V~ 406 (495)
--|..+.++.-.....+..|...+++++...+..+ -||.|.| +.|.|+. |-+.+.+.+.|=
T Consensus 16 ~~G~Hli~Dlygc~~~~L~d~~~l~~~l~~a~~~~g~til~~~~hkF~P~GvT~v~lLaESHiSiHT-WPE~gyaavDif 94 (139)
T PRK02770 16 MVGKHCILELYDCDAEKLNDEAFLRTTLTEAAKRAGATLLNLITHRFEPQGVTALALLAESHISIHT-WPESGYAAVDVF 94 (139)
T ss_pred HCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEECCCEEEEEE-CCCCCEEEEEEE
T ss_conf 2267999999877924477999999999999998799798889998079968999993042789996-676884999998
Q ss_pred ECCCCCCHHHHHHHCCCCCC
Q ss_conf 78997898785442265231
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r 426 (495)
==|.+..|+..-.......+
T Consensus 95 tCG~~~~P~~a~~~L~~~l~ 114 (139)
T PRK02770 95 TCGDHTMPEKACQYLIEELM 114 (139)
T ss_pred ECCCCCCHHHHHHHHHHHHC
T ss_conf 05999999999999999859
No 280
>PRK06172 short chain dehydrogenase; Provisional
Probab=22.24 E-value=37 Score=11.72 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.+.|.-+-.++.=|.|.+-.|. .|..+.|
T Consensus 218 ~g~pediA~~v~FLaSd~a~~i-TG~~i~V 246 (253)
T PRK06172 218 IGKVEEIANAVLYLCSDGASFT-TGHSLMV 246 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8599999999999938532682-5982873
No 281
>pfam06553 BNIP3 BNIP3. This family consists of several mammalian specific BCL2/adenovirus E1B 19-kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerization, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterized by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation.
Probab=22.21 E-value=9.6 Score=16.73 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 988805899999999
Q gi|254780701|r 436 QGVGLGLPIAQSIMA 450 (495)
Q Consensus 436 ~GtGLGLaIvk~lve 450 (495)
=|.|||.+|.|+++.
T Consensus 177 L~~GlGiyIgkRl~t 191 (197)
T pfam06553 177 LGLGLGIYIGKRLTL 191 (197)
T ss_pred HHHCCEEEEECCCCC
T ss_conf 872322477332125
No 282
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.18 E-value=37 Score=11.71 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79899998877765568860679887999
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
++|.-+-.+..=|+|++-+|. .|..|.|
T Consensus 220 ~~pediA~~v~fL~Sd~s~~i-TG~~l~V 247 (256)
T PRK07889 220 KDPTPVAKTVVALLSDWFPAT-TGEIIHV 247 (256)
T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 899999999999967822371-6885887
No 283
>pfam00207 A2M Alpha-2-macroglobulin family. This family includes the C-terminal region of the alpha-2-macroglobulin family.
Probab=22.04 E-value=37 Score=11.69 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHCCCCCCEEEEEEEEECCCE--E---EEEEE-ECCCCCCHHHHHHHCCCCC
Q ss_conf 860679887999999976985--9---99998-7899789878544226523
Q gi|254780701|r 380 VKFTAIGGRVHVTVGWTSGRG--Q---YISIK-DNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 380 iK~T~~gG~V~v~~~~~~~~~--~---~i~V~-DtG~GI~~e~~~~iF~~F~ 425 (495)
+.-|+++|...++... +|.. . .+.+. |.|.|+.+...=..|+||+
T Consensus 7 ~~~td~~G~~~~~~~l-PD~iT~w~i~a~a~s~~~~~G~~~~~~i~v~kp~~ 57 (92)
T pfam00207 7 VLVTDASGKATLSFTL-PDSITTWRITAFALSPDTGLGVAEPPEVTVFKPFF 57 (92)
T ss_pred EECCCCCCEEEEEEEC-CCCCCEEEEEEEEECCCCCCEEECCEEEEEECCEE
T ss_conf 3625999769999899-99864999999999689871252126999977689
No 284
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=22.01 E-value=37 Score=11.68 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4798999988777655688606798879999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~ 392 (495)
.++|.-+-.++.-|+|+.-+|. .|..|.|.
T Consensus 217 ~~~p~diA~~v~fL~S~~s~~i-tGq~i~vD 246 (253)
T PRK08220 217 IARPQEIANAVLFLASDLASHI-TMQDIVVD 246 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 8199999999999958543392-48328899
No 285
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=21.99 E-value=37 Score=11.68 Aligned_cols=16 Identities=6% Similarity=0.055 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999988777655688
Q gi|254780701|r 365 EKGMRQVILNLLSNAV 380 (495)
Q Consensus 365 ~~~L~qvl~NLi~NAi 380 (495)
|..=.+|....++|+.
T Consensus 42 PdYA~~Va~~v~~~~~ 57 (146)
T TIGR00689 42 PDYAKLVAQKVVEGEA 57 (146)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 4789999999862888
No 286
>PRK06198 short chain dehydrogenase; Provisional
Probab=21.91 E-value=37 Score=11.67 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.++.=|.|..-.|. .|..|.|
T Consensus 221 R~g~peeiA~~v~FL~S~~s~~i-TG~~i~V 250 (268)
T PRK06198 221 RLVDPDEVARAVAFLLSDESGLM-TGSVIDF 250 (268)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 97699999999999967432286-5837894
No 287
>PRK07791 short chain dehydrogenase; Provisional
Probab=21.60 E-value=38 Score=11.62 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.+..=|.|.+-.|. .|..+.|
T Consensus 224 ~~~PedIA~~v~FLaSd~asyI-TGq~l~V 252 (285)
T PRK07791 224 AMAPENVSPLVVWLGSAESRDV-TGKVFEV 252 (285)
T ss_pred CCCHHHHHHHHHHHCCCCCCCC-CCCEEEE
T ss_conf 8899999999999817400787-7875997
No 288
>pfam07568 HisKA_2 Histidine kinase. This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536. It is usually found adjacent to a C-terminal ATPase domain (pfam02518). This domain is found in a wide range of Bacteria and also several Archaea.
Probab=21.57 E-value=38 Score=11.62 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 77642013899999999985033687893789999999999999999999999999874220015653101199999999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~ 335 (495)
+.|-.++-|+.|.++..+-.... .+++.++.+..+..-...|..+=+.|- + .-+...+|+.+.++++
T Consensus 2 v~HRVKNnLq~i~sll~lq~~~~----~~~~~~~~l~~~~~RI~a~a~vH~~Ly---~------~~~~~~v~~~~yl~~L 68 (76)
T pfam07568 2 IHHRVKNNLQVISSLLRLQARRA----KDEEVKEALRESQNRVLSMALIHEELY---K------SEDLDTVDFSEYLEKL 68 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHH---C------CCCCCEECHHHHHHHH
T ss_conf 03889857999999999873425----999999999999999999999999997---6------9997846399999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780701|r 336 IIMLQ 340 (495)
Q Consensus 336 ~~~~~ 340 (495)
+..+.
T Consensus 69 ~~~l~ 73 (76)
T pfam07568 69 TENLF 73 (76)
T ss_pred HHHHH
T ss_conf 99999
No 289
>PRK07806 short chain dehydrogenase; Provisional
Probab=21.56 E-value=38 Score=11.61 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=5.6
Q ss_pred HHHHHHHHCCCCCCE
Q ss_conf 765568860679887
Q gi|254780701|r 374 NLLSNAVKFTAIGGR 388 (495)
Q Consensus 374 NLi~NAiK~T~~gG~ 388 (495)
|+...++.+.++||+
T Consensus 115 ~~~~~~~p~m~~gg~ 129 (248)
T PRK07806 115 RLLTLALPLMPAGSR 129 (248)
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999977504978
No 290
>PRK05875 short chain dehydrogenase; Provisional
Probab=21.52 E-value=38 Score=11.61 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.+.|.-+-.+..=|+|.+-.|. .|..|.|
T Consensus 219 R~g~pediA~~v~FL~Sd~s~~i-TGq~i~V 248 (277)
T PRK05875 219 RVGEVEDIANLAMFLLSDAASWI-TGQVINV 248 (277)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 98689999999999958831686-5881799
No 291
>PRK06523 short chain dehydrogenase; Provisional
Probab=21.48 E-value=38 Score=11.60 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.+..=|.|-+-+|. .|..|.|
T Consensus 224 ~g~peeiA~~v~FL~Sd~s~~i-TG~~i~V 252 (260)
T PRK06523 224 PAEPEEVAELIAFLASDRAASI-TGTEYVI 252 (260)
T ss_pred CCCHHHHHHHHHHHHCCHHCCE-ECCEEEE
T ss_conf 7599999999999948442686-0855788
No 292
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.43 E-value=38 Score=11.59 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus 215 ~~~pedva~~v~fL~s~~s~~i-tG~~i~v 243 (250)
T PRK12825 215 LGTPEEIADAVAFLASDAAGYI-TGQVIAV 243 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8399999999999968622282-4886898
No 293
>PRK12743 acetoin dehydrogenase; Provisional
Probab=21.34 E-value=38 Score=11.58 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+..++.=|.|.+-.|. .|..|.|
T Consensus 211 ~g~pedia~~v~fL~Sd~s~yi-TG~~i~V 239 (253)
T PRK12743 211 PGHTHEIASLVAWLCSEGASYT-TGQSLIV 239 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8499999999999938522582-5864897
No 294
>PRK06101 short chain dehydrogenase; Provisional
Probab=21.30 E-value=38 Score=11.57 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 999887776556886067988799999
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
-+......| |..+-+. | |+|.+
T Consensus 147 al~~~~~sL---a~el~~~-g-I~V~~ 168 (241)
T PRK06101 147 AVSYFARTL---ALDLKKK-G-IKVVT 168 (241)
T ss_pred HHHHHHHHH---HHHHCCC-C-CEEEE
T ss_conf 999999999---9985254-9-58999
No 295
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.29 E-value=38 Score=11.57 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=5.8
Q ss_pred ECCCCCCHHHHHHHCC
Q ss_conf 7899789878544226
Q gi|254780701|r 407 DNGPGIAEGEIPTVLT 422 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~ 422 (495)
|----|+.++.+.+.+
T Consensus 248 Dg~q~l~l~~~~~ll~ 263 (281)
T PRK12457 248 DGPSALPLDQLEPFLA 263 (281)
T ss_pred CHHCCCCHHHHHHHHH
T ss_conf 6020579999999999
No 296
>KOG1458 consensus
Probab=21.28 E-value=38 Score=11.57 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=22.8
Q ss_pred HHCCCCHHHHHHHHHH-HHHHHHHCCCCCCEEEEEEEE
Q ss_conf 0104798999988777-655688606798879999999
Q gi|254780701|r 359 SSVWADEKGMRQVILN-LLSNAVKFTAIGGRVHVTVGW 395 (495)
Q Consensus 359 ~~v~~D~~~L~qvl~N-Li~NAiK~T~~gG~V~v~~~~ 395 (495)
.-+.+|+..=--||.| |+-||+|++ |...+-++.
T Consensus 74 vN~~GdeqKkLDvlsn~l~in~L~sS---~~~~vlvSE 108 (343)
T KOG1458 74 VNSTGDEQKKLDVLSNDLFINALRSS---GRTKVLVSE 108 (343)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHC---CCEEEEEEC
T ss_conf 14676300113555489999999854---936999724
No 297
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.18 E-value=38 Score=11.56 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 88606798879999999769859999987899789878544
Q gi|254780701|r 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 (495)
Q Consensus 379 AiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~ 419 (495)
|..+.+. | |+|-+= ..|. +.-.+.....+++..+.
T Consensus 175 A~ela~~-g-IrVN~I--~PG~--i~t~~~~~~~~~~~~~~ 209 (254)
T PRK08642 175 AADLGPY-G-ITVNMV--SGGL--LRTTDASAATPEEVFDL 209 (254)
T ss_pred HHHHCCC-C-EEEEEE--CCCC--CCCCCCCCCCCHHHHHH
T ss_conf 9997133-9-699887--4555--46766555698999999
No 298
>PRK12747 short chain dehydrogenase; Provisional
Probab=20.95 E-value=39 Score=11.52 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.-|.|..-+|. .|..|.|
T Consensus 218 ~g~p~dvA~~v~fL~S~~a~~i-TG~~i~V 246 (252)
T PRK12747 218 LGEVEDIADTAAFLASPDSRWV-TGQLIDV 246 (252)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8599999999999958443382-2883748
No 299
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=20.91 E-value=39 Score=11.51 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999973112210003676101047989999887776556886
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK 381 (495)
+..+.+.+...++..+++.|+++.++.....+.+..|+.... ++.++.+
T Consensus 296 l~~~~~~i~~~~~~ia~~~gv~~~~~~~~~~~pv~~d~~l~~-----~~~~aa~ 344 (412)
T PRK12890 296 LEAAEAALLAELEAIAARRGVRIDLERTSRSRPVPCDPALVD-----AVEAAAA 344 (412)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHH-----HHHHHHH
T ss_conf 999999999999999997498499999884787577999999-----9999999
No 300
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=20.85 E-value=39 Score=11.50 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 99999874220015653--10119999999999999
Q gi|254780701|r 307 EILDLSRIEAGRYELSE--SAISLIDIVRECIIMLQ 340 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~--~~v~L~~li~~~~~~~~ 340 (495)
.++.-.|=-.|-+.|.. +.+.+.++++.+-..+.
T Consensus 53 GlV~S~RG~~GGY~Lar~p~~Itl~dIi~aiEG~i~ 88 (164)
T PRK10857 53 GLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVD 88 (164)
T ss_pred CCCEECCCCCCCCCCCCCHHHCCHHHHHHHHCCCCC
T ss_conf 850632688888033699898999999999658876
No 301
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.55 E-value=39 Score=11.46 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 479899998877765568860679887999
Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
.++|.-+-.++.=|.|.+-.|. .|..|.|
T Consensus 214 ~g~pedia~~v~fL~S~~s~~i-TG~~i~V 242 (250)
T PRK08063 214 MVEPEDLVNAVLFLCSPKADMI-RGQTIIV 242 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 8699999999999937453482-2870885
No 302
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=20.50 E-value=39 Score=11.45 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHH----HHHHHCCCCCEECCCCCCHHCCCC---HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2001565310119999999999999----999731122100036761010479---899998877765568860679
Q gi|254780701|r 316 AGRYELSESAISLIDIVRECIIMLQ----LRAQEKNIEIFQKIDPSLSSVWAD---EKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 316 ag~~~l~~~~v~L~~li~~~~~~~~----~~A~~~~~~l~~~~~~~~~~v~~D---~~~L~qvl~NLi~NAiK~T~~ 385 (495)
.|++-+++-.=|..+++-.+.+.+. ..-.+||-.+ +++..-.++|| ..++++||.+|..| +|+..
T Consensus 284 ~g~lViRPDSGDp~~ii~~~l~~L~~~FG~t~N~KGYKv---L~~~vriIqGDgI~~~~i~~Il~~l~~~--G~sa~ 355 (407)
T cd01569 284 GGTLVIRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKV---LNPHVRIIQGDGITLERIEEILERLKAK--GFASE 355 (407)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHCCEECCCCEEE---CCCCEEEEECCCCCHHHHHHHHHHHHHC--CCCHH
T ss_conf 982999479998378899899999998487215775161---4774237854886999999999999977--98314
No 303
>PRK08251 short chain dehydrogenase; Provisional
Probab=20.49 E-value=39 Score=11.45 Aligned_cols=12 Identities=8% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHCCCCCCEEEEEE
Q ss_conf 86067988799999
Q gi|254780701|r 380 VKFTAIGGRVHVTV 393 (495)
Q Consensus 380 iK~T~~gG~V~v~~ 393 (495)
..+.+. | |.|.+
T Consensus 170 ~El~~~-g-I~V~~ 181 (248)
T PRK08251 170 AEYAKT-P-IKVST 181 (248)
T ss_pred HHHCCC-C-EEEEE
T ss_conf 984666-9-29999
No 304
>PRK08628 short chain dehydrogenase; Provisional
Probab=20.43 E-value=40 Score=11.44 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0479899998877765568860679887999
Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495)
Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495)
-.++|.-+-.++.=|.|.+-.|. .|..|.|
T Consensus 217 R~g~p~eiA~~v~FL~Sd~s~~i-TG~~i~V 246 (258)
T PRK08628 217 RMTTAEEIADTAVFLLSERASHT-TGQWLFV 246 (258)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 88299999999999958343493-3887997
No 305
>PRK06949 short chain dehydrogenase; Provisional
Probab=20.41 E-value=40 Score=11.43 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 798999988777655688606
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495)
++|.-+--++.-|.|.+-+|.
T Consensus 226 g~pedia~~v~fL~S~~s~~i 246 (258)
T PRK06949 226 GKPEDLDGLLLLLAADESQFI 246 (258)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 299999999999838731673
No 306
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.34 E-value=40 Score=11.42 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=8.6
Q ss_pred EEECCCCCCHHHHHHHCCCC
Q ss_conf 98789978987854422652
Q gi|254780701|r 405 IKDNGPGIAEGEIPTVLTSF 424 (495)
Q Consensus 405 V~DtG~GI~~e~~~~iF~~F 424 (495)
.+|----|++++.+.+.+..
T Consensus 238 lsD~~q~l~~~~l~~ll~~l 257 (264)
T PRK05198 238 LSDGPNALPLDKLEPLLEQL 257 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 88600157999999999999
No 307
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=20.23 E-value=38 Score=11.63 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHH----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 997898785442----26523157776789998880589999999961985999979
Q gi|254780701|r 409 GPGIAEGEIPTV----LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 (495)
Q Consensus 409 G~GI~~e~~~~i----F~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~ 461 (495)
=.|+++++.+.- .+.|.-| .-.++|.|||| -+|+-++-|.=.++-.
T Consensus 519 ~lGl~~ee~~~kFgf~LeAf~YG----aPPHGGialGl---DRLvMlLtg~~sIRDV 568 (706)
T PRK12820 519 ALGLSEEDIEDKFGFFLRAFDFA----APPHGGIALGL---DRVVSMILQTPSIREV 568 (706)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCC----CCCCCCEEEHH---HHHHHHHCCCCCHHHE
T ss_conf 75999789888999999998669----99867031039---9999997699826505
No 308
>pfam05610 DUF779 Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.
Probab=20.06 E-value=40 Score=11.38 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=18.2
Q ss_pred CCEEEEEEECCCCEEEEEEECH
Q ss_conf 9859999798995298898472
Q gi|254780701|r 453 GGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 453 gG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
+-.+.++-.||+|..|++.-|-
T Consensus 64 hT~l~iDvv~GrG~~FSLE~p~ 85 (95)
T pfam05610 64 HTQLIIDVVPGRGGMFSLEGPE 85 (95)
T ss_pred CCEEEEEEECCCCCEEEECCCC
T ss_conf 3679999862678757714888
No 309
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=20.05 E-value=35 Score=11.93 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 978987854422----652315777678999888058999999996198599997
Q gi|254780701|r 410 PGIAEGEIPTVL----TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 (495)
Q Consensus 410 ~GI~~e~~~~iF----~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S 460 (495)
.||++++...-| +.|.-| .-.++|.|||+ -+|+-.+-|.=.++-
T Consensus 504 ~gl~~~~~~~~F~~yl~al~yG----~PPhgG~GlGi---DRLvmlltg~~nIRD 551 (587)
T PRK00476 504 LGISEEEAEEKFGFLLDALKYG----APPHGGIAFGL---DRLVMLLAGADSIRD 551 (587)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC----CCCCCEEEECH---HHHHHHHCCCCCHHE
T ss_conf 5999899988888999997679----99976376149---999999759995530
No 310
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.00 E-value=40 Score=11.37 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 999878997898785442265231
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQ 426 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r 426 (495)
-++-+.||=|++++++.+-+.|.+
T Consensus 102 Tein~~Gp~is~~~~~~~l~~~~~ 125 (310)
T COG1105 102 TEINFPGPEISEAELEQFLEQLKA 125 (310)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 870488998899999999999997
Done!