Query         gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 495
No_of_seqs    175 out of 21465
Neff          7.9 
Searched_HMMs 23785
Date          Tue May 31 19:51:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780701.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2c2a_A Sensor histidine kinase 100.0       0       0  449.2  28.0  236  241-478    12-251 (258)
  2 3d36_A Sporulation kinase B; G 100.0 6.7E-43       0  384.8  19.7  213  249-476    14-226 (244)
  3 3a0r_A Sensor protein; four he 100.0   4E-42       0  378.2  19.2  217  246-476   129-346 (349)
  4 3jz3_A Sensor protein QSEC; he 100.0 6.9E-43       0  384.7   9.5  213  251-474     4-216 (222)
  5 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.4E-32   6E-37  296.3  22.3  225  246-474   118-372 (388)
  6 2e0a_A Pyruvate dehydrogenase  100.0 9.2E-32 3.9E-36  289.3  24.9  243  246-489    93-366 (394)
  7 2btz_A Pyruvate dehydrogenase  100.0 6.2E-31 2.6E-35  282.2  21.4  224  250-474    97-349 (394)
  8 2q8g_A [pyruvate dehydrogenase 100.0   7E-30 2.9E-34  273.2  25.1  242  245-487   102-377 (407)
  9 1y8o_A [pyruvate dehydrogenase 100.0 1.2E-29 5.1E-34  271.2  21.0  229  245-474   114-373 (419)
 10 1ysr_A Sensor-type histidine k 100.0 9.2E-30 3.9E-34  272.2  14.3  147  321-475     3-149 (150)
 11 3a0y_A Sensor protein; ATP-LID 100.0 3.5E-29 1.5E-33  267.3  16.7  147  321-475     1-148 (152)
 12 1id0_A PHOQ histidine kinase;  100.0 4.6E-29 1.9E-33  266.2  16.2  145  324-476     2-146 (152)
 13 1bxd_A ENVZ(290-450), protein  100.0 3.6E-29 1.5E-33  267.1  14.4  149  317-475     2-150 (161)
 14 1r62_A Nitrogen regulation pro  99.9 1.9E-27 7.9E-32  252.4  11.1  150  319-476     1-160 (160)
 15 1b3q_A Protein (chemotaxis pro  99.9 9.2E-26 3.9E-30  237.9  16.4  204  248-476     9-249 (379)
 16 3ehh_A Sensor kinase (YOCF pro  99.8 3.7E-17 1.5E-21  164.2  20.7  188  249-475    28-216 (218)
 17 1ixm_A SPO0B, protein (sporula  99.7 1.5E-18 6.2E-23  176.1   2.9  154  245-427    17-172 (192)
 18 2zbk_B Type 2 DNA topoisomeras  99.7 2.2E-15 9.1E-20  149.0  13.9  112  364-475    28-146 (530)
 19 1mu5_A Type II DNA topoisomera  99.6 4.7E-15   2E-19  146.1  12.6  109  364-472    29-145 (471)
 20 1i58_A Chemotaxis protein CHEA  99.5   6E-15 2.5E-19  145.2   5.9   72  403-475   118-189 (189)
 21 1th8_A Anti-sigma F factor; SP  99.5 8.9E-13 3.7E-17  126.6  12.1   96  366-472    38-136 (145)
 22 3ehg_A Sensor kinase (YOCF pro  99.4 7.9E-12 3.3E-16  118.5  13.8  124  326-475     2-126 (128)
 23 1joy_A Protein (ENVZ_ecoli); h  98.8 4.4E-09 1.8E-13   94.9   4.7   59  246-313     9-67  (67)
 24 3ke6_A Protein RV1364C/MT1410;  98.7   5E-08 2.1E-12   85.9   8.3   95  365-481   295-392 (399)
 25 2q2e_B Type 2 DNA topoisomeras  98.3   2E-05 8.4E-10   63.6  12.4  113  363-475    33-152 (621)
 26 3n0r_A Response regulator; sig  98.0 5.8E-08 2.4E-12   85.3  -6.0  112  340-473    13-129 (286)
 27 3h4l_A DNA mismatch repair pro  97.7 0.00038 1.6E-08   52.6   9.6   87  367-462    25-117 (367)
 28 3na3_A DNA mismatch repair pro  97.5 0.00081 3.4E-08   49.8   9.4   97  367-472    28-131 (348)
 29 1h7s_A PMS1 protein homolog 2;  97.4   0.001 4.3E-08   48.9   9.4   87  367-462    34-126 (365)
 30 1b63_A MUTL; DNA mismatch repa  97.2 0.00054 2.3E-08   51.3   5.7   55  367-425    24-78  (333)
 31 1zxm_A TOPO IIA ATPase, DNA to  96.8  0.0028 1.2E-07   45.2   6.3   84  366-452    51-149 (400)
 32 1kij_A DNA gyrase subunit B; t  96.5  0.0054 2.3E-07   42.7   6.4   86  363-452    28-127 (390)
 33 1pvg_A DNA topoisomerase II; G  96.5  0.0033 1.4E-07   44.6   5.0   83  367-452    64-161 (418)
 34 1ei1_A DNA gyrase B, GYRB; ATP  96.5  0.0044 1.8E-07   43.5   5.7   83  366-452    33-129 (391)
 35 2cg9_A ATP-dependent molecular  96.5  0.0063 2.7E-07   42.1   6.3   82  388-472    63-177 (677)
 36 3cwv_A DNA gyrase, B subunit,   96.4   0.011 4.7E-07   40.0   7.3  100  362-471    25-126 (369)
 37 3ied_A Heat shock protein; HSP  96.2  0.0085 3.6E-07   41.0   5.6   59  388-449   120-189 (272)
 38 3g7e_A DNA gyrase subunit B; i  96.1  0.0068 2.8E-07   41.9   4.9  108  365-476    19-161 (203)
 39 1y4s_A Chaperone protein HTPG;  96.1   0.012 4.9E-07   39.9   6.1   63  386-449    60-134 (559)
 40 2no2_A HIP-I, huntingtin-inter  95.7    0.04 1.7E-06   35.3   7.3   39  220-258    69-107 (107)
 41 2ioq_A Chaperone protein HTPG;  95.6    0.02 8.2E-07   37.9   5.4   86  360-449    23-134 (624)
 42 3peh_A Endoplasmin homolog; st  95.3   0.028 1.2E-06   36.6   5.5   63  387-450    80-153 (281)
 43 2o1u_A Endoplasmin; GRP94, HSP  95.1   0.028 1.2E-06   36.6   5.0  108  360-473    41-201 (666)
 44 1s16_A Topoisomerase IV subuni  94.9   0.028 1.2E-06   36.6   4.5   88  361-452    25-126 (390)
 45 1qy5_A Endoplasmin; GRP94, NEC  94.9   0.039 1.6E-06   35.3   5.3   36  388-424    63-98  (269)
 46 1uyl_A HSP 86, heat shock prot  94.6   0.059 2.5E-06   33.8   5.7   56  387-446    76-142 (236)
 47 2ior_A Chaperone protein HTPG;  94.6   0.052 2.2E-06   34.3   5.3   58  388-448    84-153 (235)
 48 3fv5_A DNA topoisomerase 4 sub  94.6   0.015 6.2E-07   38.9   2.4  104  361-473    11-128 (201)
 49 2wer_A ATP-dependent molecular  94.5   0.029 1.2E-06   36.5   3.8   83  361-447    23-129 (220)
 50 2gqp_A Endoplasmin; GRP94, HSP  94.5   0.049 2.1E-06   34.5   4.9   34  388-422    67-100 (236)
 51 1yc1_A HSP 86, heat shock prot  93.4   0.087 3.7E-06   32.4   4.5   61  387-450   104-174 (264)
 52 3g75_A DNA gyrase subunit B; a  93.3   0.072   3E-06   33.1   4.0   90  363-472    16-107 (184)
 53 1wa9_A Period circadian protei  85.9    0.17 7.1E-06   29.9   0.8   27  242-268   289-315 (368)
 54 1vhw_A Purine nucleoside phosp  68.1     2.3 9.5E-05   20.2   2.1   55  360-417    20-74  (253)
 55 2b94_A Purine nucleoside phosp  66.6       5 0.00021   17.3   4.5   53  360-416    43-95  (267)
 56 1z34_A Purine nucleoside phosp  62.9     3.5 0.00015   18.6   2.3   54  360-416    17-70  (235)
 57 1wma_A Carbonyl reductase [NAD  58.4     6.7 0.00028   16.2   3.3   18  443-460   206-224 (276)
 58 3bje_A Nucleoside phosphorylas  57.5     3.7 0.00015   18.4   1.6   74  346-422    29-112 (349)
 59 3ddo_A Urdpase, upase, uridine  56.8     3.5 0.00015   18.6   1.4   54  360-417    23-76  (253)
 60 1q1g_A Uridine phosphorylase p  53.4     7.7 0.00032   15.7   2.7   53  361-417    23-75  (276)
 61 1odk_A Purine nucleoside phosp  48.3     7.7 0.00032   15.7   2.1   53  361-416    19-71  (235)
 62 3ijr_A Oxidoreductase, short c  47.4     8.2 0.00035   15.4   2.1   29  362-391   255-283 (291)
 63 2uzp_A Protein kinase C gamma   46.9     9.7 0.00041   14.8   2.6   48  381-429     2-49  (144)
 64 2ac7_A Purine nucleoside phosp  46.3     8.5 0.00036   15.3   2.0   53  360-415    17-69  (235)
 65 1vr7_A Adometdc, samdc, S-aden  42.8      11 0.00046   14.3   5.8   82  346-428    16-115 (142)
 66 3o38_A Short chain dehydrogena  39.3      12 0.00052   13.9   2.0   29  362-391   233-261 (266)
 67 2vz8_A Fatty acid synthase; tr  38.8      11 0.00047   14.3   1.7   14  407-420  2407-2420(2512)
 68 3e9n_A Putative short-chain de  35.1      14 0.00059   13.4   2.1   18  361-378   199-216 (245)
 69 1e7w_A Pteridine reductase; di  35.1      13 0.00054   13.8   1.5   21  363-383   255-275 (291)
 70 3op4_A 3-oxoacyl-[acyl-carrier  34.7      13 0.00055   13.7   1.5   27  363-390   214-240 (248)
 71 1zmo_A Halohydrin dehalogenase  33.5      15 0.00062   13.2   2.1   20  364-383   212-231 (244)
 72 1nff_A Putative oxidoreductase  33.5      14 0.00058   13.5   1.5   29  362-391   206-234 (260)
 73 2dkn_A 3-alpha-hydroxysteroid   33.3      14 0.00059   13.4   1.5   30  361-391   213-242 (255)
 74 3lf2_A Short chain oxidoreduct  33.1      14 0.00061   13.3   1.5   29  362-391   229-257 (265)
 75 2bgk_A Rhizome secoisolaricire  33.0      14  0.0006   13.4   1.5   21  363-383   231-251 (278)
 76 2b4q_A Rhamnolipids biosynthes  32.6      15 0.00061   13.3   1.5   28  363-391   243-270 (276)
 77 1edo_A Beta-keto acyl carrier   32.6      15 0.00063   13.2   1.5   21  363-383   210-231 (244)
 78 2o23_A HADH2 protein; HSD17B10  32.6      15 0.00062   13.3   1.5   16  363-378   230-245 (265)
 79 1ulu_A Enoyl-acyl carrier prot  32.4      15 0.00065   13.1   2.4   21  363-383   221-241 (261)
 80 3euf_A Uridine phosphorylase 1  32.3      11 0.00046   14.4   0.8   92  360-469    75-185 (328)
 81 1h5q_A NADP-dependent mannitol  32.2      15 0.00063   13.2   1.5   17  367-383   235-251 (265)
 82 1w6u_A 2,4-dienoyl-COA reducta  32.2      15 0.00063   13.2   1.5   29  362-391   238-266 (302)
 83 1x1t_A D(-)-3-hydroxybutyrate   32.1      15 0.00065   13.1   1.5   28  363-391   226-253 (260)
 84 3ezl_A Acetoacetyl-COA reducta  32.1      15 0.00064   13.2   1.5   29  362-391   221-249 (256)
 85 1yde_A Retinal dehydrogenase/r  32.0      15 0.00065   13.1   1.5   28  362-391   218-245 (270)
 86 2gdz_A NAD+-dependent 15-hydro  32.0      15 0.00064   13.2   1.5   40  362-410   221-260 (267)
 87 3d7l_A LIN1944 protein; APC893  32.0      16 0.00066   13.0   2.1   12  362-373    76-87  (202)
 88 3gvc_A Oxidoreductase, probabl  32.0      16 0.00066   13.0   2.0   29  362-391   240-268 (277)
 89 2zat_A Dehydrogenase/reductase  31.9      16 0.00065   13.1   1.5   28  363-391   225-252 (260)
 90 1mxh_A Pteridine reductase 2;   31.9      16 0.00066   13.0   1.5   21  363-383   240-260 (276)
 91 3is3_A 17BETA-hydroxysteroid d  31.8      15 0.00064   13.1   1.5   27  363-390   238-264 (270)
 92 3e03_A Short chain dehydrogena  31.8      15 0.00065   13.1   1.5   22  362-383   214-235 (274)
 93 1zk4_A R-specific alcohol dehy  31.6      16 0.00065   13.1   1.5   21  363-383   217-237 (251)
 94 1cyd_A Carbonyl reductase; sho  31.6      16 0.00065   13.0   1.5   28  363-391   210-237 (244)
 95 3a28_C L-2.3-butanediol dehydr  31.5      16 0.00067   13.0   1.6   29  362-391   223-251 (258)
 96 1d7o_A Enoyl-[acyl-carrier pro  31.3      16 0.00067   13.0   3.8   28  363-391   254-281 (297)
 97 1k2w_A Sorbitol dehydrogenase;  31.3      16 0.00067   12.9   1.5   29  362-391   221-249 (256)
 98 1uls_A Putative 3-oxoacyl-acyl  31.2      16 0.00067   13.0   1.5   27  363-390   207-233 (245)
 99 1yxm_A Pecra, peroxisomal tran  31.1      16 0.00067   13.0   1.5   29  362-391   233-261 (303)
100 3edm_A Short chain dehydrogena  31.1      16 0.00067   12.9   1.5   21  363-383   217-237 (259)
101 2yv4_A Hypothetical protein PH  31.1     7.9 0.00033   15.6  -0.1   90  361-457     9-103 (105)
102 1ooe_A Dihydropteridine reduct  31.0      16 0.00068   12.9   1.5   16  363-378   196-211 (236)
103 3lyl_A 3-oxoacyl-(acyl-carrier  31.0      16 0.00068   12.9   1.5   26  363-389   213-238 (247)
104 2pnf_A 3-oxoacyl-[acyl-carrier  30.8      16 0.00068   12.9   1.5   21  363-383   216-236 (248)
105 2uvd_A 3-oxoacyl-(acyl-carrier  30.7      16 0.00068   12.9   1.5   21  363-383   213-233 (246)
106 2nwq_A Probable short-chain de  30.7      16 0.00069   12.9   2.1   11  381-393   188-198 (272)
107 1sby_A Alcohol dehydrogenase;   30.7      16 0.00069   12.9   1.5   12  380-393   167-178 (254)
108 1gee_A Glucose 1-dehydrogenase  30.6      16 0.00069   12.9   1.5   29  362-391   218-246 (261)
109 2wsb_A Galactitol dehydrogenas  30.5      16 0.00069   12.9   1.5   29  362-391   219-247 (254)
110 1ja9_A 4HNR, 1,3,6,8-tetrahydr  30.3      17 0.00069   12.8   1.5   28  363-391   242-269 (274)
111 2qhx_A Pteridine reductase 1;   30.3      17 0.00069   12.8   1.5   12  380-393   250-261 (328)
112 3cxt_A Dehydrogenase with diff  30.1      17  0.0007   12.8   1.5   29  362-391   249-277 (291)
113 2pd6_A Estradiol 17-beta-dehyd  30.0      17  0.0007   12.8   1.5   29  362-391   223-251 (264)
114 3d3w_A L-xylulose reductase; u  29.8      17 0.00071   12.8   1.5   29  362-391   209-237 (244)
115 2bd0_A Sepiapterin reductase;   29.7      17 0.00071   12.7   1.6   14  364-377   209-222 (244)
116 1g0o_A Trihydroxynaphthalene r  29.7      17 0.00071   12.7   1.5   29  362-391   249-277 (283)
117 1o5i_A 3-oxoacyl-(acyl carrier  29.5      17 0.00072   12.7   1.5   29  362-391   212-240 (249)
118 2a4k_A 3-oxoacyl-[acyl carrier  29.3      17 0.00072   12.7   1.5   53  362-424   207-259 (263)
119 2z1n_A Dehydrogenase; reductas  29.1      17 0.00072   12.7   1.5   21  363-383   227-247 (260)
120 2ae2_A Protein (tropinone redu  29.1      17 0.00072   12.7   1.5   29  362-391   222-250 (260)
121 3guy_A Short-chain dehydrogena  28.8      17 0.00073   12.6   2.3   11  462-472   210-220 (230)
122 1xkq_A Short-chain reductase f  28.8      17 0.00073   12.6   1.5   27  363-390   230-257 (280)
123 2c07_A 3-oxoacyl-(acyl-carrier  28.6      18 0.00074   12.6   2.0   20  364-383   253-272 (285)
124 3i4f_A 3-oxoacyl-[acyl-carrier  28.6      18 0.00074   12.6   1.5   29  362-391   219-247 (264)
125 3f9i_A 3-oxoacyl-[acyl-carrier  28.5      18 0.00074   12.6   1.5   29  362-391   214-242 (249)
126 1iy8_A Levodione reductase; ox  28.5      18 0.00074   12.6   1.5   29  362-391   231-259 (267)
127 1oaa_A Sepiapterin reductase;   28.4      18 0.00074   12.6   2.6   14  364-377   232-245 (259)
128 2x9g_A PTR1, pteridine reducta  28.3      18 0.00074   12.6   1.7   21  363-383   252-272 (288)
129 1ae1_A Tropinone reductase-I;   28.3      18 0.00075   12.6   1.5   29  362-391   235-263 (273)
130 1geg_A Acetoin reductase; SDR   28.2      18 0.00075   12.6   1.5   29  362-391   221-249 (256)
131 2ph3_A 3-oxoacyl-[acyl carrier  28.1      15 0.00065   13.1   0.9   29  362-391   210-238 (245)
132 2rhc_B Actinorhodin polyketide  28.1      18 0.00075   12.5   1.5   29  362-391   242-270 (277)
133 2ag5_A DHRS6, dehydrogenase/re  28.1      18 0.00075   12.5   1.5   29  362-391   211-239 (246)
134 1zem_A Xylitol dehydrogenase;   27.9      18 0.00076   12.5   1.5   28  363-391   232-259 (262)
135 2ekp_A 2-deoxy-D-gluconate 3-d  27.9      18 0.00076   12.5   1.5   29  362-391   204-232 (239)
136 1hxh_A 3BETA/17BETA-hydroxyste  27.8      18 0.00076   12.5   1.5   29  362-391   216-244 (253)
137 1fjh_A 3alpha-hydroxysteroid d  27.7      18 0.00076   12.5   3.1   30  361-391   215-244 (257)
138 3imf_A Short chain dehydrogena  27.6      18 0.00076   12.5   1.5   28  362-390   218-245 (257)
139 3osu_A 3-oxoacyl-[acyl-carrier  27.6      18 0.00076   12.5   1.5   21  363-383   213-233 (246)
140 3ftp_A 3-oxoacyl-[acyl-carrier  27.4      18 0.00077   12.5   1.5   29  362-391   235-263 (270)
141 2nm0_A Probable 3-oxacyl-(acyl  27.4      18 0.00077   12.4   1.5   21  363-383   218-238 (253)
142 1uzm_A 3-oxoacyl-[acyl-carrier  27.3      18 0.00077   12.4   1.5   29  362-391   211-239 (247)
143 1wex_A Hypothetical protein (r  27.3      18 0.00077   12.4   1.5   28  402-429    17-44  (104)
144 3lmm_A Uncharacterized protein  27.2      18 0.00077   12.4   6.8  131  327-474   263-407 (583)
145 1xg5_A ARPG836; short chain de  27.1      18 0.00078   12.4   1.5   21  363-383   248-268 (279)
146 3dii_A Short-chain dehydrogena  26.8      19 0.00079   12.4   3.1   17  362-378   199-215 (247)
147 1je0_A MTAP;, 5'-methylthioade  26.7      19 0.00079   12.3   2.1   53  361-417    19-71  (236)
148 2cq1_A PTB-like protein L; RRM  25.9      19 0.00081   12.2   1.7   68  402-474    17-89  (101)
149 1fmc_A 7 alpha-hydroxysteroid   25.9      18 0.00075   12.6   0.9   26  363-389   219-244 (255)
150 3gaf_A 7-alpha-hydroxysteroid   25.9      19 0.00081   12.2   1.7   29  362-391   219-247 (256)
151 1dhr_A Dihydropteridine reduct  25.7      18 0.00076   12.5   0.9   28  363-391   200-227 (241)
152 3grp_A 3-oxoacyl-(acyl carrier  25.7      19 0.00082   12.2   1.5   29  362-391   231-259 (266)
153 1gz6_A Estradiol 17 beta-dehyd  25.5      20 0.00082   12.2   1.5   20  334-353   173-192 (319)
154 2o2s_A Enoyl-acyl carrier redu  25.4      20 0.00083   12.2   3.2   27  363-390   261-287 (315)
155 2ew8_A (S)-1-phenylethanol deh  25.0      20 0.00084   12.1   1.5   21  363-383   215-235 (249)
156 1x4d_A Matrin 3; structural ge  24.9      20 0.00084   12.1   1.6   40  401-440    16-56  (102)
157 2cfc_A 2-(R)-hydroxypropyl-COM  24.7      20 0.00085   12.1   1.5   29  362-391   215-243 (250)
158 2d1y_A Hypothetical protein TT  24.5      20 0.00086   12.0   1.5   29  362-391   213-241 (256)
159 3gk3_A Acetoacetyl-COA reducta  24.3      20 0.00084   12.1   0.9   27  362-389   234-260 (269)
160 2q2v_A Beta-D-hydroxybutyrate   24.2      21 0.00087   12.0   1.5   30  361-391   219-248 (255)
161 1xhl_A Short-chain dehydrogena  24.2      21 0.00087   12.0   1.5   29  362-391   247-276 (297)
162 3oec_A Carveol dehydrogenase (  24.0      21 0.00087   12.0   1.5   28  363-391   282-309 (317)
163 3gr6_A Enoyl-[acyl-carrier-pro  23.9      21 0.00088   12.0   2.3   21  363-383   225-245 (260)
164 2hq1_A Glucose/ribitol dehydro  23.7      21 0.00088   11.9   1.5   29  362-391   213-241 (247)
165 3n74_A 3-ketoacyl-(acyl-carrie  23.6      21 0.00089   11.9   1.5   21  363-383   223-243 (261)
166 2ayx_A Sensor kinase protein R  23.6    0.18 7.4E-06   29.7  -9.7   65  403-473    29-94  (254)
167 3lt0_A Enoyl-ACP reductase; tr  23.5      21 0.00089   11.9   2.1   28  363-391   291-318 (329)
168 2dtx_A Glucose 1-dehydrogenase  23.5      21 0.00089   11.9   3.1   29  362-391   214-242 (264)
169 1spx_A Short-chain reductase f  23.5      21 0.00089   11.9   1.5   29  362-391   229-258 (278)
170 3grk_A Enoyl-(acyl-carrier-pro  23.3      21  0.0009   11.9   2.3   29  362-391   243-271 (293)
171 1hdc_A 3-alpha, 20 beta-hydrox  23.2      21  0.0009   11.9   1.5   27  364-391   212-238 (254)
172 2fwm_X 2,3-dihydro-2,3-dihydro  23.0      22 0.00091   11.8   3.1   29  362-391   214-242 (250)
173 3i1j_A Oxidoreductase, short c  23.0      22 0.00091   11.8   3.1   10  363-372   114-123 (247)
174 2cq2_A Hypothetical protein LO  22.9      15 0.00064   13.1   0.1   66  403-471    28-99  (114)
175 3k31_A Enoyl-(acyl-carrier-pro  22.9      22 0.00091   11.8   1.7   29  362-391   242-270 (296)
176 3f1l_A Uncharacterized oxidore  22.8      22 0.00092   11.8   1.5   26  363-389   215-240 (252)
177 2zpa_A Uncharacterized protein  22.5      22 0.00093   11.8   1.9  104  361-472   359-498 (671)
178 1x5p_A Negative elongation fac  22.1      19 0.00078   12.4   0.4   65  402-474    17-85  (97)
179 2hjm_A Hypothetical protein PF  21.9      23 0.00095   11.7   4.9   36  265-300    50-85  (103)
180 3ksu_A 3-oxoacyl-acyl carrier   21.8      18 0.00076   12.5   0.3   20  442-461   169-189 (262)
181 1uay_A Type II 3-hydroxyacyl-C  21.8      23 0.00095   11.6   3.0   26  362-390   207-232 (242)
182 3ojf_A Enoyl-[acyl-carrier-pro  21.7      23 0.00096   11.6   1.2   21  363-383   221-241 (257)
183 3nrc_A Enoyl-[acyl-carrier-pro  21.6      23 0.00096   11.6   2.0   28  363-391   240-267 (280)
184 2ad9_A Polypyrimidine tract-bi  21.5      23 0.00096   11.6   1.0   38  402-439    33-70  (119)
185 1zmt_A Haloalcohol dehalogenas  21.5      23 0.00096   11.6   2.1   44  362-414   211-254 (254)
186 3icc_A Putative 3-oxoacyl-(acy  21.3      23 0.00097   11.6   1.5   49  328-376    72-124 (255)
187 1vl8_A Gluconate 5-dehydrogena  21.0      23 0.00098   11.5   1.5   27  364-391   234-260 (267)
188 2ptg_A Enoyl-acyl carrier redu  21.0      23 0.00098   11.5   2.1  107  327-461   119-237 (319)
189 2wbr_A GW182, gawky, LD47780P;  20.6      19 0.00079   12.4   0.2   68  402-475     9-80  (89)
190 1x4f_A Matrin 3; structural ge  20.5      20 0.00084   12.1   0.3   39  402-440    27-66  (112)

No 1  
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00  E-value=0  Score=449.17  Aligned_cols=236  Identities=31%  Similarity=0.508  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999889999977642013899999999985033687893789999999999999999999999999874220015
Q gi|254780701|r  241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE  320 (495)
Q Consensus       241 ~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~  320 (495)
                      +.++.+++|++|++++||||||||++|.||+++|.+.. ...+++++++|++.|.+++++|..||+++||+||+|+|.++
T Consensus        12 rl~~~~~~k~~f~a~isHELrtPL~~I~~~~~~l~~~~-~~~~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~e~~~~~   90 (258)
T 2c2a_A           12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSL-GELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ   90 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTG-GGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999999979998589999999999997145-56999999999999999999999999999999844279987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEE
Q ss_conf             653101199999999999999997311221000367610-1047989999887776556886067988---799999997
Q gi|254780701|r  321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT  396 (495)
Q Consensus       321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~  396 (495)
                      ++.+++|+.+++++++..+.+.+..+++.+.++.+++.| .+++|+.+|+||+.||++||+|||++||   .|.+.+.. 
T Consensus        91 l~~~~~~l~~l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~-  169 (258)
T 2c2a_A           91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE-  169 (258)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE-
T ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-
T ss_conf             4215876999999999999999997697899970899866999879999999999999999855358982489999960-


Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf             69859999987899789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r  397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      .++.+.|+|+|+|+|||++++++||+||||++++.++..+|+||||+|||+|+++|||+|+++|++|+||+|+++||..+
T Consensus       170 ~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~~~~~~G~GLGL~i~k~iv~~hgG~I~v~S~~g~Gt~f~i~lP~~~  249 (258)
T 2c2a_A          170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR  249 (258)
T ss_dssp             ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf             59989999998289889899998745988288888899994048999999999983998999955999269999961897


Q ss_pred             CC
Q ss_conf             07
Q gi|254780701|r  477 VL  478 (495)
Q Consensus       477 ~~  478 (495)
                      ..
T Consensus       250 ~~  251 (258)
T 2c2a_A          250 AG  251 (258)
T ss_dssp             --
T ss_pred             CC
T ss_conf             57


No 2  
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00  E-value=6.7e-43  Score=384.79  Aligned_cols=213  Identities=23%  Similarity=0.383  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r  249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL  328 (495)
Q Consensus       249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L  328 (495)
                      -.+|.|++||||||||++|.||+++|.++..   .++..+++++.|.++.++|..+++++|+++|.+.+    +.+++++
T Consensus        14 lg~l~a~isHElrtPLt~I~~~~~ll~~~~~---~~~~~~~~~~~i~~~~~rl~~li~~ll~~~~~~~~----~~~~~~l   86 (244)
T 3d36_A           14 VTHLAASISHEIRNPLTAARGFIQLIEEQPL---AADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV   86 (244)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHGGGCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCEEECH
T ss_conf             9999999999986799999999999977899---86999999999999999999999999987276878----9716649


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC
Q ss_conf             99999999999999973112210003676101047989999887776556886067988799999997698599999878
Q gi|254780701|r  329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN  408 (495)
Q Consensus       329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt  408 (495)
                      ..+++++++.+.+.+..+++.+....++  ..+++|+.+|+||+.||++||+||+|+||.|.|.+.. +++.+.|+|+|+
T Consensus        87 ~~~i~~~~~~~~~~~~~~~i~~~~~~~~--~~v~~d~~~l~qvl~NLl~NAik~~~~~~~i~i~~~~-~~~~v~i~V~D~  163 (244)
T 3d36_A           87 KLEIERVIDILRPLANMSCVDIQATLAP--FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSI-DNGRVLIRIADT  163 (244)
T ss_dssp             HHHHHHHHHHHHHHHTTTTEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEE-ETTEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-ECCEEEEEEEEC
T ss_conf             9999999999999975168599950798--4699779999999999999999867689768999996-088899999986


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf             99789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r  409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      |+|||++++++||+|||+..     ..+|+||||+|||+|++.|||+|+++|++|+||+|+++||.+.
T Consensus       164 G~GI~~e~~~~iFepF~~tk-----~~~GtGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~lP~~~  226 (244)
T 3d36_A          164 GVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS  226 (244)
T ss_dssp             SSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred             CCCCCHHHHHHHCCCCCCCC-----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf             88989899998669986589-----9996476899999999988997999966999669999987899


No 3  
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00  E-value=4e-42  Score=378.19  Aligned_cols=217  Identities=28%  Similarity=0.428  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99988999997764201389999999998503368789378999999999999999999999999987422001565310
Q gi|254780701|r  246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA  325 (495)
Q Consensus       246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~  325 (495)
                      ..++++|++++||||||||++|.|++++|.....   +++..+++++.|.++++||..+|+++|+++|.   +..++.++
T Consensus       129 ~~~l~~~~~~iaHelrnPL~~I~~~~~~l~~~~~---~~~~~~~~l~~i~~~~~rl~~li~~ll~~~~~---~~~~~~~~  202 (349)
T 3a0r_A          129 LSILGEMTARVAHEIRNPITIIGGFIMRMKKHLD---DPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTE  202 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS---CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCC
T ss_conf             9999999997655502426799999999971479---97999999999999999999999889987344---33356676


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEE
Q ss_conf             11999999999999999973112210003676101047989999887776556886067988799999997698599999
Q gi|254780701|r  326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI  405 (495)
Q Consensus       326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V  405 (495)
                      +|+.+++++++..+.+.+..+++++..+.++..+.+++|+.+|+||+.||++||+||+++||.|+|+++. .++.++|+|
T Consensus       203 ~~l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~g~I~v~~~~-~~~~v~i~V  281 (349)
T 3a0r_A          203 FNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYTKVRVSV  281 (349)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEE-ETTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEE
T ss_conf             5799999999999999998669189997278870899857899999999999999976799669999995-354899999


Q ss_pred             EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf             878997898785442265231577767899988805899999999-61985999979899529889847247
Q gi|254780701|r  406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve-~hgG~i~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      +|+|+|||++++++||+|||+.      +.+|+||||+|||+|++ .|||.|+++|. |+||+|+++||.++
T Consensus       282 ~D~G~Gi~~~~~~~iFepF~tt------k~~GtGLGL~i~k~iv~~~hgG~i~~~s~-~~Gt~F~i~lP~~~  346 (349)
T 3a0r_A          282 WNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPKTP  346 (349)
T ss_dssp             EEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC-SSEEEEEEEEESCT
T ss_pred             EECCCCCCHHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECCCC
T ss_conf             9789998989998726996318------98973557999999999848998999977-99779999935998


No 4  
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00  E-value=6.9e-43  Score=384.73  Aligned_cols=213  Identities=25%  Similarity=0.373  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             99999776420138999999999850336878937899999999999999999999999998742200156531011999
Q gi|254780701|r  251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID  330 (495)
Q Consensus       251 ~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~  330 (495)
                      +|++++||||||||++|.|++|++.....   +++..++++..|.+++++|..+|+++|++||+|.+...++.+++++.+
T Consensus         4 ~F~a~iSHELrTPLt~I~~~~ell~~~~~---~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~~~~~~~~~~~~~~l~~   80 (222)
T 3jz3_A            4 RFTSDAAHELRSPLTALKVQTEVAQLSDD---DPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLED   80 (222)
T ss_dssp             ---------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHH
T ss_conf             99999999982899999999999854799---989999999999999999999999999998763055646544442899


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf             99999999999997311221000367610104798999988777655688606798879999999769859999987899
Q gi|254780701|r  331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP  410 (495)
Q Consensus       331 li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~  410 (495)
                      ++++++..+.+.+..+++.+.+..+++.+.+.+|+.+|+||+.|||+||+||||+||.|.|++.  .+ .  +.|+|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAikys~~~~~I~i~~~--~~-~--~~v~D~G~  155 (222)
T 3jz3_A           81 LLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--AD-N--FIVRDNGP  155 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--SS-E--EEEECSCC
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--EE-E--EEECCCCC
T ss_conf             9999999999999974957999707766468326999999999999999986899967999997--42-4--99835899


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf             7898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r  411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       411 GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~  474 (495)
                      |||++++++||+||||.++   +..+|+||||+|||+|+++|||+|+++|.+|+||+|+++|+-
T Consensus       156 GI~~e~~~~iFe~F~r~~~---~~~~G~GLGL~Ivk~iv~~hgG~I~v~s~~~~Gt~f~i~F~E  216 (222)
T 3jz3_A          156 GVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE  216 (222)
T ss_dssp             -----------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC
T ss_pred             CCCHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf             9899999986179741899---999952678999999999839989999779898799999773


No 5  
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00  E-value=1.4e-32  Score=296.26  Aligned_cols=225  Identities=16%  Similarity=0.159  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99988999997764201389999999998503368789378999999999999999999999999987422001565310
Q gi|254780701|r  246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA  325 (495)
Q Consensus       246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~  325 (495)
                      +...+++++.+.||.+||++.|.+..+-+++..   ..++..+++++.+..+..++..+++++|++++.+.+...+....
T Consensus       118 ~~~f~~~l~~il~~~~~~l~~la~gl~e~~~~~---~~~~~~~~~Ld~~~~s~~~~~~li~~~L~l~~~~~~~vg~i~~~  194 (388)
T 1gkz_A          118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI---EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTR  194 (388)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999998701649999999999998517---86699999999999978789999999998502478865532788


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCC-CCCEECCCCC-CHHCCCCHHHHHHHHHHHHHHHHHCCCCCC--------EEEEEEEE
Q ss_conf             1199999999999999997311-2210003676-101047989999887776556886067988--------79999999
Q gi|254780701|r  326 ISLIDIVRECIIMLQLRAQEKN-IEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG--------RVHVTVGW  395 (495)
Q Consensus       326 v~L~~li~~~~~~~~~~A~~~~-~~l~~~~~~~-~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG--------~V~v~~~~  395 (495)
                      +++.++++++...+...+..+. ....+.+... ...+.+||..|+||+.||+.||+|||++++        .|.|.+. 
T Consensus       195 ~~l~~vi~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~dp~~L~~il~NLL~NAikat~e~~~~~~~~~p~I~v~i~-  273 (388)
T 1gkz_A          195 LSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA-  273 (388)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-
T ss_conf             9999999999999999999853887403434788736147889999999999999999977167555777884799997-


Q ss_pred             ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC--------------------CCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             76985999998789978987854422652315777678--------------------9998880589999999961985
Q gi|254780701|r  396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------------------AEQGVGLGLPIAQSIMANHGGQ  455 (495)
Q Consensus       396 ~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~--------------------~~~GtGLGLaIvk~lve~hgG~  455 (495)
                      ..++.+.|.|+|+|+|||+|++++||++||+......+                    ...|+||||+|||.+++.|||+
T Consensus       274 ~~~~~v~I~I~D~G~GIp~e~l~~IF~~fyTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~isr~~ae~~GG~  353 (388)
T 1gkz_A          274 NNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGS  353 (388)
T ss_dssp             ECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCE
T ss_pred             ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCE
T ss_conf             15886999998699987999998762755246765555543333212111135566789888704499999999986997


Q ss_pred             EEEEEECCCCEEEEEEECH
Q ss_conf             9999798995298898472
Q gi|254780701|r  456 FLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       456 i~v~S~~G~Gt~f~v~LP~  474 (495)
                      |+++|.+|.||+|+++||.
T Consensus       354 I~v~S~~G~GT~~~l~L~~  372 (388)
T 1gkz_A          354 LQLQSLQGIGTDVYLRLRH  372 (388)
T ss_dssp             EEEEEETTTEEEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEEECC
T ss_conf             8999547964699999789


No 6  
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00  E-value=9.2e-32  Score=289.32  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf             9998899999776420138999----999999850336878937899999999999999999999999998742200---
Q gi|254780701|r  246 NLAKSRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR---  318 (495)
Q Consensus       246 ~~~Ks~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~---  318 (495)
                      .....+|...++|++++|.+.|    .|+.|+...........+...++++.+..+...+..|+++.+.+.+-....   
T Consensus        93 ~~~~~~F~~~l~~~~~~h~~~i~~la~G~~El~~~~~~~~~~~~~l~~~Ld~~~~~ri~~r~Li~q~l~l~~~~~~~~~~  172 (394)
T 2e0a_A           93 QKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPS  172 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             89999999999999965526999999999999864034634289999999999984677999999899973354457855


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCC-----EECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC------
Q ss_conf             -1565310119999999999999999731---1221-----000367610104798999988777655688606------
Q gi|254780701|r  319 -YELSESAISLIDIVRECIIMLQLRAQEK---NIEI-----FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT------  383 (495)
Q Consensus       319 -~~l~~~~v~L~~li~~~~~~~~~~A~~~---~~~l-----~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T------  383 (495)
                       ...-...+++.++++++.+.....+...   ...+     ....++..+.+.+||.+|+|||.||+.||+|||      
T Consensus       173 ~ig~I~~~~~~~~vi~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~L~~il~NLl~NAikat~e~~~~  252 (394)
T 2e0a_A          173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN  252 (394)
T ss_dssp             SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             33641566989999999999999999986367876236676200699986899889999999999999999999863877


Q ss_pred             -CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             -7988799999997698599999878997898785442265231577------767899988805899999999619859
Q gi|254780701|r  384 -AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI------AIKSAEQGVGLGLPIAQSIMANHGGQF  456 (495)
Q Consensus       384 -~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~------~~~~~~~GtGLGLaIvk~lve~hgG~i  456 (495)
                       +.++.|.|.+.. .++.+.|.|+|+|+|||++++++||++||+...      +.++..+|+||||+|||.+++.|||+|
T Consensus       253 ~~~~~~I~v~v~~-~~~~v~I~VsD~G~GI~~e~l~~IF~~fytt~~~~~~~~s~~~~~~GtGlGL~isr~i~~~hgG~I  331 (394)
T 2e0a_A          253 QPSLTPIEVIVVL-GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDL  331 (394)
T ss_dssp             SSSCCCEEEEEEE-CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             8988728999962-799799999966999898999876165520787565665556898961376999999999879979


Q ss_pred             EEEEECCCCEEEEEEECHHH--CCCCCCCCCCCCC
Q ss_conf             99979899529889847247--0746998764434
Q gi|254780701|r  457 LIRSKLREGVEVIAILPNTR--VLNFIPEDNHEST  489 (495)
Q Consensus       457 ~v~S~~G~Gt~f~v~LP~~~--~~~~~p~~~~~~~  489 (495)
                      +++|.+|.||+|+++||+-.  -..-.|..|..+.
T Consensus       332 ~v~S~~G~GT~f~l~Lp~l~~~~~e~~p~~~~~~~  366 (394)
T 2e0a_A          332 NLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAF  366 (394)
T ss_dssp             EEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHH
T ss_pred             EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCH
T ss_conf             99942798459999984889877777887786411


No 7  
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00  E-value=6.2e-31  Score=282.21  Aligned_cols=224  Identities=16%  Similarity=0.214  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             899999776420138999----9999998503368789378999999999999999999999999987422001565---
Q gi|254780701|r  250 SRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS---  322 (495)
Q Consensus       250 s~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~---  322 (495)
                      .+|...++|.++++.+.|    .|+.|+...........+..++++..+..+...+..++++.+.+.+.+......+   
T Consensus        97 ~~f~~~l~~i~~~h~~~i~~la~G~~El~~~~~~~~~~~e~l~~~Ld~~l~~ri~~r~li~~~l~l~~~~~~~~~~~~vg  176 (394)
T 2btz_A           97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIG  176 (394)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCBT
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999715319999999999998763025456899999999999977889999999998763013666656025


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHC-----CCCCEE--CCCC-CCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCE----
Q ss_conf             --310119999999999999999731-----122100--0367-61010479899998877765568860679887----
Q gi|254780701|r  323 --ESAISLIDIVRECIIMLQLRAQEK-----NIEIFQ--KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR----  388 (495)
Q Consensus       323 --~~~v~L~~li~~~~~~~~~~A~~~-----~~~l~~--~~~~-~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~----  388 (495)
                        ...+++.++++++.+.....+..+     .+.+..  .... ....+.+||.+|+|||.||++||+|||++++.    
T Consensus       177 ~I~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~i~i~~~~~~~~~~~~~~~~dp~~L~qIl~NLl~NAikat~e~~~~~~~  256 (394)
T 2btz_A          177 SIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLI  256 (394)
T ss_dssp             TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTCSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             12578999999999999999999997455887368875137899885798679999999999999999987620356888


Q ss_pred             ---EEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf             ---999999976985999998789978987854422652315777678999-----888058999999996198599997
Q gi|254780701|r  389 ---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-----GVGLGLPIAQSIMANHGGQFLIRS  460 (495)
Q Consensus       389 ---V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~-----GtGLGLaIvk~lve~hgG~i~v~S  460 (495)
                         |.|.+.. .++.+.|+|+|+|+|||++++++||++||+.+.+.++..+     |+||||+|||.+++.|||+|+++|
T Consensus       257 ~~~I~V~i~~-~~~~v~I~V~D~G~GI~~e~l~~IF~~fytt~~~~~~~~~~~~~~G~GLGL~isk~~~~~hgG~I~v~S  335 (394)
T 2btz_A          257 LPPIKVMVAL-GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFS  335 (394)
T ss_dssp             CCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             8707999985-797899999889999898999987387621678777777888889815019999999998699899996


Q ss_pred             ECCCCEEEEEEECH
Q ss_conf             98995298898472
Q gi|254780701|r  461 KLREGVEVIAILPN  474 (495)
Q Consensus       461 ~~G~Gt~f~v~LP~  474 (495)
                      .+|.||+|+|+||+
T Consensus       336 ~~G~GT~f~i~Lp~  349 (394)
T 2btz_A          336 MEGFGTDAVIYLKA  349 (394)
T ss_dssp             ETTTEEEEEEEEES
T ss_pred             ECCCCEEEEEEEEC
T ss_conf             08961699999708


No 8  
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.98  E-value=7e-30  Score=273.22  Aligned_cols=242  Identities=14%  Similarity=0.148  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99998899999776420138999----99999985033687893789999999999999999999999999874220015
Q gi|254780701|r  245 ENLAKSRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE  320 (495)
Q Consensus       245 a~~~Ks~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~  320 (495)
                      .+....+|...++|++++|.+.|    .|+.|+-......+...+..+.+++.+..+...+..++++.+.+++.+....+
T Consensus       102 ~~~~~~~F~~~l~~il~~h~~~i~~la~G~~El~~~~~~~~~~~e~i~~fLd~~~~~ri~~r~li~~~l~L~~~~~~~~~  181 (407)
T 2q8g_A          102 DAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSP  181 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             49999999999999986505089999999999988503465669999999999998427689998778876302246884


Q ss_pred             CC-------CCCCCHHHHHHHHHHHHHHHHHHCCCC---CEE----C-CCCCCHHCCCCHHHHHHHHHHHHHHHHHCC--
Q ss_conf             65-------310119999999999999999731122---100----0-367610104798999988777655688606--
Q gi|254780701|r  321 LS-------ESAISLIDIVRECIIMLQLRAQEKNIE---IFQ----K-IDPSLSSVWADEKGMRQVILNLLSNAVKFT--  383 (495)
Q Consensus       321 l~-------~~~v~L~~li~~~~~~~~~~A~~~~~~---l~~----~-~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T--  383 (495)
                      ..       ...+++.++++++.+.....+..+...   +.+    . .+.....+.+||..|+||+.||+.||+|||  
T Consensus       182 ~~~~~iG~I~~~~~~~~vi~~a~~~a~~~~~~~~~~~p~v~i~~~~~~~~~~~~~~~~~p~~L~~il~nLLkNA~ratve  261 (407)
T 2q8g_A          182 SHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATME  261 (407)
T ss_dssp             ---CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10221152145588999999999999999999753040333222013689987389953999999999999999999883


Q ss_pred             -----CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC------CCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             -----7988799999997698599999878997898785442265231------57776789998880589999999961
Q gi|254780701|r  384 -----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ------GSIAIKSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       384 -----~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r------~~~~~~~~~~GtGLGLaIvk~lve~h  452 (495)
                           +..+.|.|.+.. .++.+.|.|+|+|+|||++++++||++||+      .+.+..+...|+||||+|||.+++.|
T Consensus       262 ~~~~~~~~p~I~V~i~~-~~~~v~I~IsD~G~GI~~e~l~~IF~~fytT~~~~~~d~~~~~~~~G~GlGL~isr~~ae~~  340 (407)
T 2q8g_A          262 HHANRGVYPPIQVHVTL-GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYF  340 (407)
T ss_dssp             HSTTTCCCCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             37668998738999984-78479999998998979899987715543277866655556689897115499999999987


Q ss_pred             CCEEEEEEECCCCEEEEEEECHH--HCCCCCCCCCCC
Q ss_conf             98599997989952988984724--707469987644
Q gi|254780701|r  453 GGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNHE  487 (495)
Q Consensus       453 gG~i~v~S~~G~Gt~f~v~LP~~--~~~~~~p~~~~~  487 (495)
                      ||+|+++|.+|.||+|+++||+-  ....-.|..+..
T Consensus       341 gG~I~v~S~~G~GTd~~l~Lp~l~~~~~e~~p~~~~~  377 (407)
T 2q8g_A          341 QGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKA  377 (407)
T ss_dssp             TCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHH
T ss_pred             CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             9979999647962599999708998766668877865


No 9  
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97  E-value=1.2e-29  Score=271.15  Aligned_cols=229  Identities=16%  Similarity=0.168  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999988999997764201389999----9999985033687893789999999999999999999999999874220015
Q gi|254780701|r  245 ENLAKSRFLASMSHELRTPLNAIL----GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE  320 (495)
Q Consensus       245 a~~~Ks~FlA~~SHELRTPL~aI~----g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~  320 (495)
                      .+..+++|...++|+++++.+.|.    |..|+...........+..+.+++.+..+-..+..++++.+.+++.+.....
T Consensus       114 ~~~~~~~F~~~l~~il~~h~~~i~~la~G~~El~~~~~~~~~~~~~l~~~Ld~~~~sri~~r~Li~~~l~l~~~~~~~~~  193 (419)
T 1y8o_A          114 DPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVH  193 (419)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSS
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             58999999999999996740499999999999876521353208999999999997356589988666543203247545


Q ss_pred             CC-----CCCCCHHHHHHHHHHHHHHHHHHCCC-----CCE---ECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             65-----31011999999999999999973112-----210---003676101047989999887776556886067988
Q gi|254780701|r  321 LS-----ESAISLIDIVRECIIMLQLRAQEKNI-----EIF---QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG  387 (495)
Q Consensus       321 l~-----~~~v~L~~li~~~~~~~~~~A~~~~~-----~l~---~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG  387 (495)
                      .+     ...+++.++++++.+.....+..+-.     .+.   ...++....+.+||..|+|||.||+.||+|||++++
T Consensus       194 ~~~vg~I~~~~~~~~iv~~a~~~a~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~dp~~L~qIL~NLL~NAikat~e~~  273 (419)
T 1y8o_A          194 PKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELY  273 (419)
T ss_dssp             TTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45234325558899999999999999999861668640245421147998758996799999999999998999888652


Q ss_pred             --------EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             --------7999999976985999998789978987854422652315------77767899988805899999999619
Q gi|254780701|r  388 --------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------SIAIKSAEQGVGLGLPIAQSIMANHG  453 (495)
Q Consensus       388 --------~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~------~~~~~~~~~GtGLGLaIvk~lve~hg  453 (495)
                              .|.|.+.. .++.+.|.|+|+|+|||++++++||++||+.      +.+.++..+|+||||+|||.+++.||
T Consensus       274 ~~~~~~~P~I~V~i~~-~~~~v~I~IsD~G~GI~~e~~~~IF~~fytt~~~~~~~~~~~~~~~G~GlGL~isk~~ae~~g  352 (419)
T 1y8o_A          274 EDRKEGYPAVKTLVTL-GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ  352 (419)
T ss_dssp             TTCSSCCCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTT
T ss_pred             CCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             3467888707999985-696899999879999898999877075762688776555566898964141999999999869


Q ss_pred             CEEEEEEECCCCEEEEEEECH
Q ss_conf             859999798995298898472
Q gi|254780701|r  454 GQFLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       454 G~i~v~S~~G~Gt~f~v~LP~  474 (495)
                      |+|+++|.+|.||.|+++||+
T Consensus       353 G~i~v~S~~G~GT~~~l~L~~  373 (419)
T 1y8o_A          353 GDLKLYSMEGVGTDAVIYLKA  373 (419)
T ss_dssp             CEEEEEEETTTEEEEEEEEES
T ss_pred             CEEEEEEECCCCEEEEEEEEC
T ss_conf             989999647963699999728


No 10 
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.97  E-value=9.2e-30  Score=272.19  Aligned_cols=147  Identities=25%  Similarity=0.379  Sum_probs=130.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
Q ss_conf             65310119999999999999999731122100036761010479899998877765568860679887999999976985
Q gi|254780701|r  321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG  400 (495)
Q Consensus       321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~  400 (495)
                      .+.+|||+.+++++++..+...+..+++++.  .++ .+.+.+|+.+|+|++.||++||+||++. +.|.|++.. .++.
T Consensus         3 ~d~~pvdl~~li~~~~~~~~~~~~~~~i~~~--~~~-~~~v~~d~~~l~~vl~NLl~NAiky~~~-~~I~i~~~~-~~~~   77 (150)
T 1ysr_A            3 DDHVPVDITDLLDRAAHDAARIYPDLDVSLV--PSP-TCIIVGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVS-SRAG   77 (150)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHSTTCEEEEC--SCC-CCEEEECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEE-ETTE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--CCC-CCEEEECHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE-ECCE
T ss_conf             8881508999999999999987379868997--699-9689989999999999999999974899-789999998-0999


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             999998789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      +.|+|+|+|+|||++++++||+||||++++   +.+|+||||+|||+++++|||+|+++|.+|+||+|+++||+.
T Consensus        78 v~i~V~D~G~GI~~~~~~~iF~~F~r~~~~---~~~G~GLGL~i~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~~  149 (150)
T 1ysr_A           78 VEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP  149 (150)
T ss_dssp             EEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             999999848797989999855763417999---989607799999999998599899996699816999999849


No 11 
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.97  E-value=3.5e-29  Score=267.25  Aligned_cols=147  Identities=27%  Similarity=0.454  Sum_probs=135.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
Q ss_conf             65310119999999999999999731122100036761010479899998877765568860679887999999976985
Q gi|254780701|r  321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG  400 (495)
Q Consensus       321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~  400 (495)
                      ++.++||+.++++++...+.+.++++++.+..+.+++.+.+++|+.+|+||+.||++||+|||++||.|.|++.. .++.
T Consensus         1 Le~~~~dl~~~i~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~~~~~~~~I~i~~~~-~~~~   79 (152)
T 3a0y_A            1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYTK   79 (152)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE-CSSE
T ss_pred             CCCEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCE
T ss_conf             948897599999999999999998789899998089887999879999999999999999981499779999996-5988


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             99999878997898785442265231577767899988805899999999-6198599997989952988984724
Q gi|254780701|r  401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve-~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      +.|+|+|+|+|||++++++||+|||+.      +.+|+||||+|||+|++ +|||.+.++|. +.||+|+++||.+
T Consensus        80 v~i~V~D~G~Gi~~e~~~~iFe~F~t~------k~~GtGLGL~i~k~iv~~~hgg~i~~~~~-~~Gt~f~i~lP~~  148 (152)
T 3a0y_A           80 VRVSVWNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPKT  148 (152)
T ss_dssp             EEEEEEEESCCCCGGGTTGGGSTTCCC------C--CCCCSHHHHHHHHHTTTSCEEEEEEE-TTEEEEEEEEESC
T ss_pred             EEEEEECCCCCCCHHHHHHCCCCCEEC------CCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECCC
T ss_conf             999997089998999998716995188------98950679999999999958999999966-9947999995299


No 12 
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.96  E-value=4.6e-29  Score=266.21  Aligned_cols=145  Identities=21%  Similarity=0.316  Sum_probs=131.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEE
Q ss_conf             10119999999999999999731122100036761010479899998877765568860679887999999976985999
Q gi|254780701|r  324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI  403 (495)
Q Consensus       324 ~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i  403 (495)
                      |.+++.+++++++..+.+.+.+|++++.++.+++ ..+++|+.+|+||+.||++||+|||+++  |.|++.. .++.+.|
T Consensus         2 E~~~l~~ll~~~~~~~~~~~~~k~i~~~~~~~~~-~~~~~d~~~l~~vl~NLl~NAiky~~~~--i~I~~~~-~~~~~~i   77 (152)
T 1id0_A            2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE-ISFVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQ-TDEHLYI   77 (152)
T ss_dssp             CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT-CEEESCHHHHHHHHHHHHHHHHHHCSSE--EEEEEEE-CSSCEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHHCCCC--EEEEEEE-ECCEEEE
T ss_conf             7653999999999999999997897899974999-7799889999999999999999977998--8999999-7999999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf             9987899789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r  404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      +|+|+|+|||++++++||+||||++++    .+|+||||+|||+|+++|||+|+++|.+|+||+|+++||.+.
T Consensus        78 ~V~D~G~Gi~~~~~~~iF~~F~r~~~~----~~G~GLGL~i~k~iv~~h~G~I~~~s~~~~G~~f~i~lP~~~  146 (152)
T 1id0_A           78 VVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH  146 (152)
T ss_dssp             EEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred             EEEECCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             999889998989999872897048999----897147999999999985998999975998579999987999


No 13 
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.96  E-value=3.6e-29  Score=267.11  Aligned_cols=149  Identities=28%  Similarity=0.451  Sum_probs=129.4

Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             00156531011999999999999999973112210003676101047989999887776556886067988799999997
Q gi|254780701|r  317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT  396 (495)
Q Consensus       317 g~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~  396 (495)
                      |+ +++.+++||.+++++++..+.+.  .+  .+.+...++.+.+++|+.+|+|++.|||+||+||+  +|.|.|++.. 
T Consensus         2 Gq-~l~~e~~dL~~l~~~~i~~~~~~--~~--~i~~~~~~~~~~v~~d~~~l~~vl~NLi~NAik~~--~~~I~i~~~~-   73 (161)
T 1bxd_A            2 GQ-EMPMEMADLNAVLGEVIAAESGY--ER--EIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGT-   73 (161)
T ss_dssp             CC-CCCSEEECHHHHHHHHHHHHCSS--SC--CEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEE-
T ss_pred             CC-CCCCCEECHHHHHHHHHHHHHCC--CC--CEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-
T ss_conf             98-89873086999999999974131--28--57999669985899889999999999999999747--9859999999-


Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             6985999998789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      +++.+.|+|+|+|+|||++++++||+||||+++++  ..+|+||||+|||+|+++|||+|+++|.+|+||+|+++||..
T Consensus        74 ~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~--~~~G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lPl~  150 (161)
T 1bxd_A           74 EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR--TISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVP  150 (161)
T ss_dssp             ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC--CCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCC
T ss_pred             ECCEEEEEEEECCCCCCHHHHHHHHCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE
T ss_conf             66989999998675559999988658835887888--688866079999999998799899997399918999999843


No 14 
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=99.95  E-value=1.9e-27  Score=252.37  Aligned_cols=150  Identities=25%  Similarity=0.383  Sum_probs=128.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE---
Q ss_conf             15653101199999999999999997311221000367610104798999988777655688606798879999999---
Q gi|254780701|r  319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---  395 (495)
Q Consensus       319 ~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~---  395 (495)
                      ++...+++++.+++++++..++... .+++++..+.+++.|.+.+|+.+|+||+.||++||+||++.++.+......   
T Consensus         1 ~P~~k~~~nl~evi~~~~~l~~~~~-~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~   79 (160)
T 1r62_A            1 LPGTRVTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF   79 (160)
T ss_dssp             ----CEEECHHHHHHHHHHHHTTTC-CTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred             CCCCCEEECHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf             9998678889999999999999875-599899998399997799889999999999999999850368961688641023


Q ss_pred             -------ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf             -------7698599999878997898785442265231577767899988805899999999619859999798995298
Q gi|254780701|r  396 -------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV  468 (495)
Q Consensus       396 -------~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f  468 (495)
                             ..+..+.|+|+|+|+|||+++++++|+|||+.      +.+|+||||+|||+|++.|||+|+++|++| ||+|
T Consensus        80 ~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~t~------k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F  152 (160)
T 1r62_A           80 QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEF  152 (160)
T ss_dssp             EEEETTEEEEEEEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEE
T ss_pred             EEEEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEC------CCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEE
T ss_conf             034302356846899978788977989999727872204------889986619999999998699899999489-7899


Q ss_pred             EEEECHHH
Q ss_conf             89847247
Q gi|254780701|r  469 IAILPNTR  476 (495)
Q Consensus       469 ~v~LP~~~  476 (495)
                      +++||..+
T Consensus       153 ~i~lPl~~  160 (160)
T 1r62_A          153 SVYLPIRK  160 (160)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEECC
T ss_conf             99998219


No 15 
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=99.94  E-value=9.2e-26  Score=237.90  Aligned_cols=204  Identities=20%  Similarity=0.233  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r  248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS  327 (495)
Q Consensus       248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~  327 (495)
                      +|-++|.|++|||.++.+.+.   +.+.+     ..       .+.+.++.++|.+++++++|..+-        .+.++
T Consensus         9 ~~ld~l~n~~gEL~~~~~~l~---~~~~~-----~~-------~~~l~~~~~~l~~l~~~L~~~~~~--------~r~~~   65 (379)
T 1b3q_A            9 EKLDNLMDLMGELVIARSRIL---ETLKK-----YN-------IKELDESLSHLSRITLDLQNVVMK--------IRMVP   65 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HTTSS-----CC-------CHHHHHHHHHHHHHHHHHHHHHHH--------HHEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHH-----HH-------HHHHHHHHHHHHHHHHHHHHHHHH--------HCCCC
T ss_conf             999999999987999898889---99887-----67-------999999999999999999998757--------25011


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CHHCCCCHHHHHHHHHHHHHHHHHCCCCC------------CEEEEEEE
Q ss_conf             999999999999999973112210003676-10104798999988777655688606798------------87999999
Q gi|254780701|r  328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIG------------GRVHVTVG  394 (495)
Q Consensus       328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~-~~~v~~D~~~L~qvl~NLi~NAiK~T~~g------------G~V~v~~~  394 (495)
                      +.++++.+.......++.++..+.+....+ .....+|..+|+|++.||+.||+||++++            |.+.+.+.
T Consensus        66 l~~~~~~~~~~v~~~a~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~  145 (379)
T 1b3q_A           66 ISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR  145 (379)
T ss_dssp             THHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEE
T ss_conf             99999999999999999719969999758873256002999999999998777764347862898864035553037999


Q ss_pred             EECCCEEEEEEEECCCCCCHHH------------------------HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9769859999987899789878------------------------5442265231577767899988805899999999
Q gi|254780701|r  395 WTSGRGQYISIKDNGPGIAEGE------------------------IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA  450 (495)
Q Consensus       395 ~~~~~~~~i~V~DtG~GI~~e~------------------------~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve  450 (495)
                      . .++.+.++++|+|+||+++.                        .+.+|+||+... +..+..+|+||||+|||++++
T Consensus       146 ~-~~~~i~i~~~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~s~~-~~~~~~~G~GLGL~ivk~ive  223 (379)
T 1b3q_A          146 H-EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTK-EKVSEVSGRGVGMDVVKNVVE  223 (379)
T ss_dssp             E-ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHH
T ss_pred             E-CCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCHHHHHHHHH
T ss_conf             7-49879999940687766434412589840222323455467899776532464434-320137999614999999999


Q ss_pred             HCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf             61985999979899529889847247
Q gi|254780701|r  451 NHGGQFLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       451 ~hgG~i~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      +|||+|+++|+||+||+|+++||...
T Consensus       224 ~hgG~I~V~S~~G~GTtF~i~lP~~~  249 (379)
T 1b3q_A          224 SLNGSMGIESEKDKGTKVTIRLPLTL  249 (379)
T ss_dssp             HTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred             HHCCEEEEEEECCCCEEEEEEEEEEH
T ss_conf             83887999961898889999996413


No 16 
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.80  E-value=3.7e-17  Score=164.16  Aligned_cols=188  Identities=16%  Similarity=0.188  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r  249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL  328 (495)
Q Consensus       249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L  328 (495)
                      ++++...+-|.+.++|++|..+.+.+....  ....+...+.+..+....+.+...+..+   ...        ..+...
T Consensus        28 R~ria~~lHd~v~~~Lt~i~~~~~~~~~~~--~~~~~~~~~~l~~i~~~~r~~~~~~~~~---~~~--------~~~~~~   94 (218)
T 3ehh_A           28 RQRMARDLVDTLGQKLSLMGLKSDLARKLI--YKDPEQAARELKSVQQTARTSLNEVRKI---VSS--------MKGIRL   94 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHHHHHHH---HTT--------TCCCCH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------HCCCCH
T ss_conf             999999845335459999999999999753--0587999999999999999999999987---753--------023205


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEE
Q ss_conf             999999999999999731122100036761010-4798999988777655688606798879999999769859999987
Q gi|254780701|r  329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD  407 (495)
Q Consensus       329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~D  407 (495)
                      ...........    ........+........+ ..+...+.+|+.|++.||+||.+. ..|.+.+.. .++.+.+.|.|
T Consensus        95 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~ell~Na~kh~~~-~~v~i~~~~-~~~~~~i~v~D  168 (218)
T 3ehh_A           95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQ-LWKEVVITVSD  168 (218)
T ss_dssp             HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEE-ETTEEEEEEEE
T ss_pred             HHHHHHHHHHH----HHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECC-CCCEEEEECCC
T ss_conf             77899999999----8638848998357764457047999999999999711211455-058987414-32034322147


Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             89978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      +|+|||++.                  .+|+||||++++++++.|||+++++|.  .||+|+++||..
T Consensus       169 ng~g~~~~~------------------~~~~GlGL~~v~~~i~~~gG~i~~~s~--~Gt~~~i~lP~~  216 (218)
T 3ehh_A          169 DGTFKGEEN------------------SFSKGHGLLGMRERLEFANGSLHIDTE--NGTKLTMAIPNN  216 (218)
T ss_dssp             SSCCCC--------------------------CHHHHHHHHHHHTTCEEEEECS--SSEEEEEEEEC-
T ss_pred             CCCCCCCCC------------------CCCCCCHHHHHHHHHHHCCCEEEEECC--CCEEEEEEECCC
T ss_conf             987667778------------------999982199999999988988999869--987999997199


No 17 
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=99.71  E-value=1.5e-18  Score=176.14  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99998899999776420138999999999850336878937899999999999999999999999998742200156531
Q gi|254780701|r  245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES  324 (495)
Q Consensus       245 a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~  324 (495)
                      .+.++.+|++.+|||+||||++|.||++++..        +...+++..+.....+...++       +.+         
T Consensus        17 ~~~~l~~~l~~~~HdlrnpLt~I~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~-------~~~---------   72 (192)
T 1ixm_A           17 LTNELIHLLGHSRHDWMNKLQLIKGNLSLQKY--------DRVFEMIEEMVIDAKHESKLS-------NLK---------   72 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHHHHHH-------TTT---------
T ss_pred             HHHHHHHHHHHCCHHHCCHHHHHHCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------HHH---------
T ss_conf             99999999985663324757787541024210--------011110112333223567776-------323---------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEECC-CCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEEEECCCEEE
Q ss_conf             011999999999999999973112210003-67610104798999988777655688606798-8799999997698599
Q gi|254780701|r  325 AISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY  402 (495)
Q Consensus       325 ~v~L~~li~~~~~~~~~~A~~~~~~l~~~~-~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g-G~V~v~~~~~~~~~~~  402 (495)
                      ...    +.................+.+.. .+..+.+.+|+.++.|++.||+.||+||++++ +.|+|.+.. .++.+.
T Consensus        73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~nli~NAi~~~~~~~~~I~i~~~~-~~~~~~  147 (192)
T 1ixm_A           73 TPH----LAFDFLTFNWKTHYMTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDH-PDRQLI  147 (192)
T ss_dssp             CHH----HHHHHHHGGGSCCSSEEEEEEESSCCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCC-SSSSCE
T ss_pred             HHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEE
T ss_conf             567----787777789998863334321247763001211399999999999999887427898669999996-799999


Q ss_pred             EEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf             9998789978987854422652315
Q gi|254780701|r  403 ISIKDNGPGIAEGEIPTVLTSFGQG  427 (495)
Q Consensus       403 i~V~DtG~GI~~e~~~~iF~~F~r~  427 (495)
                      |+|.|+|+|||++++++||++|||+
T Consensus       148 i~i~D~G~gi~~~~l~~i~~~~~~~  172 (192)
T 1ixm_A          148 LYLDFHGAFADPSAFDDIRQNGYED  172 (192)
T ss_dssp             EEEEEESCBSCGGGCC---------
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999768856889999987611376


No 18 
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.66  E-value=2.2e-15  Score=148.97  Aligned_cols=112  Identities=18%  Similarity=0.254  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCC-CC
Q ss_conf             989999887776556886067988---799999997--698599999878997898785442265231577767899-98
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QG  437 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~--~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~-~G  437 (495)
                      +..-|.|++.+||+||++++..++   .|.|.+...  +.+...|+|+|||+||++++++.+|++|.|.+.+.++.. +|
T Consensus        28 ~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~l~~~f~~f~~s~~~~~~~~~G~  107 (530)
T 2zbk_B           28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM  107 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             46569999999999999888725898835999998348995789999962898999999998642034776453244786


Q ss_pred             CCCHHHHHHHHHHHCCC-EEEEEEECCCCEEEEEEECHH
Q ss_conf             88058999999996198-599997989952988984724
Q gi|254780701|r  438 VGLGLPIAQSIMANHGG-QFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       438 tGLGLaIvk~lve~hgG-~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      +||||+||+.++..|.| .++|.|++|.|++|+++.|-.
T Consensus       108 ~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~  146 (530)
T 2zbk_B          108 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI  146 (530)
T ss_dssp             SSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCC
T ss_conf             544589999999980597599999458996489983344


No 19 
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.63  E-value=4.7e-15  Score=146.11  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECC--CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             989999887776556886067988---79999999769--8599999878997898785442265231577767899988
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV  438 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~--~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~Gt  438 (495)
                      +...|.|++.|||+||++|++.+|   .|.|.+...++  +...|.|+|||+|||+++++++|++|++++...++...|.
T Consensus        29 ~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i~~iF~r~~~~sk~~~~~~~G~  108 (471)
T 1mu5_A           29 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM  108 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             02169999999999999978855998716999997368886899999962899999999998650262567665036896


Q ss_pred             -CCHHHHHHHHHHHCCCE-EEEEEECCCCEEE-EEEE
Q ss_conf             -80589999999961985-9999798995298-8984
Q gi|254780701|r  439 -GLGLPIAQSIMANHGGQ-FLIRSKLREGVEV-IAIL  472 (495)
Q Consensus       439 -GLGLaIvk~lve~hgG~-i~v~S~~G~Gt~f-~v~L  472 (495)
                       ||||+++..++++|+|+ +.|.|+.+.|++. .+.+
T Consensus       109 ~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l  145 (471)
T 1mu5_A          109 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKL  145 (471)
T ss_dssp             CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE
T ss_conf             2134899999999737946999994489973799873


No 20 
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.54  E-value=6e-15  Score=145.18  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=65.5

Q ss_pred             EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             9998789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      ..+.|.|+|++.+..+.+|++|++.... ++..+|+||||+|||+++++|||+|+++|++|+||+|+++||.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~g~GLGL~ivk~ive~hgG~I~v~S~~g~GTtf~i~lPl~  189 (189)
T 1i58_A          118 IDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT  189 (189)
T ss_dssp             SCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred             CCCCCCCCCCHHHHHHCCCEECCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             1224455630243343031102212442-35689883749999999998799899996189977999999577


No 21 
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.46  E-value=8.9e-13  Score=126.58  Aligned_cols=96  Identities=19%  Similarity=0.327  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             999988777655688606---79887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r  366 KGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL  442 (495)
Q Consensus       366 ~~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL  442 (495)
                      .-+++++.|+++|||||.   .++|.|.|++.. .++.+.|+|+|+|+|||+  .+.+|+||+...    ...+|+||||
T Consensus        38 ~di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~-~~~~l~i~V~D~G~Gi~~--~~~~~~~~~~~~----~~~~~~GlGL  110 (145)
T 1th8_A           38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVII-EDGVVHLTVRDEGVGIPD--IEEARQPLFTTK----PELERSGMGF  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE-ETTEEEEEEEECSSCCSC--HHHHTCCC-----------CCCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-ECCEEEEEEEECCCCCCC--HHHCCCCCCCCC----CCCCCCCHHH
T ss_conf             999999999999998843489999089999999-378999999964789585--775378775446----7999573689


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             999999996198599997989952988984
Q gi|254780701|r  443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL  472 (495)
Q Consensus       443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~L  472 (495)
                      +|+|+++    ++++++|++|+||+|+++-
T Consensus       111 ~ii~~l~----d~i~i~s~~~~Gt~v~l~K  136 (145)
T 1th8_A          111 TIMENFM----DEVIVESEVNKGTTVYLKK  136 (145)
T ss_dssp             HHHHHHS----SEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHC----CEEEEEECCCCCEEEEEEE
T ss_conf             9999969----9999998399969999998


No 22 
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.41  E-value=7.9e-12  Score=118.46  Aligned_cols=124  Identities=18%  Similarity=0.221  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf             1199999999999999997311221000367610104-798999988777655688606798879999999769859999
Q gi|254780701|r  326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS  404 (495)
Q Consensus       326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~-~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~  404 (495)
                      +.|.+.+..+.+.+    +..++.+.++.+..+..+. ..+..|.+++.++++||+||+.. +.|.|++..+ ++.+.++
T Consensus         2 i~L~eel~~~~~~l----~~~~i~~~~~~~~~~~~l~~~~~~~l~~ii~E~ltNa~kHa~a-~~v~v~l~~~-~~~~~l~   75 (128)
T 3ehg_A            2 IRLKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQL-WKEVVIT   75 (128)
T ss_dssp             CCHHHHHHHHHHHH----HHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEE-TTEEEEE
T ss_pred             CCHHHHHHHHHHHH----HHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEE-CCEEEEE
T ss_conf             81799999999999----9879889998079845489789999999999999999984799-6799999987-9999999


Q ss_pred             EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             98789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       405 V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      |+|+|+|++++                  ...+.|+||...++.++.+||++.++|.  .||++++++|..
T Consensus        76 V~DnG~g~~~~------------------~~~~~G~GL~~~~~Rv~~~gG~l~i~s~--~Gt~v~i~iPl~  126 (128)
T 3ehg_A           76 VSDDGTFKGEE------------------NSFSKGHGLLGMRERLEFANGSLHIDTE--NGTKLTMAIPNN  126 (128)
T ss_dssp             EEESSCCCSCS------------------SCCCTTSHHHHHHHHHHHTTCEEEEECS--SSEEEEEEEEC-
T ss_pred             EEECCCCCCCC------------------CCCCCCCCHHHHHHHHHHCCCEEEEECC--CCEEEEEEEECC
T ss_conf             99799454345------------------5789986699999999987999999879--998999999799


No 23 
>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1
Probab=98.78  E-value=4.4e-09  Score=94.93  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99988999997764201389999999998503368789378999999999999999999999999987
Q gi|254780701|r  246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR  313 (495)
Q Consensus       246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr  313 (495)
                      ...|.+|++++||||||||++|.|+++.+.+.         ..++.+.|.++.++|..||+++|++||
T Consensus         9 ~~~r~~f~a~iSHeLRTPLt~i~~~~e~l~~~---------~~~~~~~i~~~~~~m~~lv~~lL~~aR   67 (67)
T 1joy_A            9 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ---------DGYLAESINKDIEECNAIIEQFIDYLR   67 (67)
T ss_dssp             SSSHHHHHTTTHHHHHHHHHHHHHHHHHHHHH---------HTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999875276256898999999871346---------899999999999999999999998559


No 24 
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.71  E-value=5e-08  Score=85.85  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             8999988777655688606798---8799999997698599999878997898785442265231577767899988805
Q gi|254780701|r  365 EKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG  441 (495)
Q Consensus       365 ~~~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG  441 (495)
                      ...+..++..++.||++|...+   +.+.+......++.+.|+|+|+|+|+|+.+                 .....|+|
T Consensus       295 ~~~~~l~v~E~~~Nav~Hg~~~~~~~~~~~~~~~~~~~~l~i~v~D~G~g~~~~~-----------------~~~~~GrG  357 (399)
T 3ke6_A          295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-----------------GARGRGRG  357 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCC-----------------CCCCCCCH
T ss_conf             9899999999999899836788899719999999439999999998989989899-----------------99999657


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCCC
Q ss_conf             8999999996198599997989952988984724707469
Q gi|254780701|r  442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI  481 (495)
Q Consensus       442 LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~~  481 (495)
                      |+|++++++    ++++++.+| ||++++++|.++.....
T Consensus       358 l~lv~~l~d----~~~~~~~~~-G~~v~l~~~l~~pa~~~  392 (399)
T 3ke6_A          358 LAMAEALVS----EARIMHGAG-GTTATLTHRLSRPARFV  392 (399)
T ss_dssp             HHHHHTTSS----EEEEEEETT-EEEEEEEEECEEECEEC
T ss_pred             HHHHHHHHH----CEEEEECCC-CEEEEEEEECCCCCCCC
T ss_conf             999999985----777899999-49999999899877666


No 25 
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.29  E-value=2e-05  Score=63.57  Aligned_cols=113  Identities=23%  Similarity=0.249  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-CCCCC-
Q ss_conf             7989999887776556886067988---799999997698599999878997898785442265231577767-89998-
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQG-  437 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~-~~~~G-  437 (495)
                      .+..-|.+++.-||+||+.-...-|   .|.|.+...+++...|+|+|+|+|||.++++.+|.....++.-.. ...+| 
T Consensus        33 ~~~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~d~~~~~l~~l~~sgK~~~~~~s~G~  112 (621)
T 2q2e_B           33 SAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQ  112 (621)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHEECCCCCCCCCCCCCCC
T ss_conf             86217899899999718868976399982599999689964699999848999989999986084667787665117997


Q ss_pred             CCCHHHHHHHHHHHCC-CEEEEEEEC-CCCEEEEEEECHH
Q ss_conf             8805899999999619-859999798-9952988984724
Q gi|254780701|r  438 VGLGLPIAQSIMANHG-GQFLIRSKL-REGVEVIAILPNT  475 (495)
Q Consensus       438 tGLGLaIvk~lve~hg-G~i~v~S~~-G~Gt~f~v~LP~~  475 (495)
                      .|+|.+-|-.+...|- ..++|.|.. +.+..+...+...
T Consensus       113 ~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~  152 (621)
T 2q2e_B          113 QGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMIN  152 (621)
T ss_dssp             SSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCC
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCC
T ss_conf             6656768888768642863899996179872599984156


No 26 
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=97.96  E-value=5.8e-08  Score=85.30  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             HHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH
Q ss_conf             99997311221000367610104798999988777655688606798879999999769859999987899789878544
Q gi|254780701|r  340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT  419 (495)
Q Consensus       340 ~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~  419 (495)
                      ...|+.|++++.++++|++|       +|||++.||++||.|.... ..+.+..- ..+        +++.+........
T Consensus        13 g~~~r~k~L~L~~~iaP~LP-------rLRQil~nLvGNA~~Gd~~-v~~~Le~l-~~~--------~~~~~~~~~~r~~   75 (286)
T 3n0r_A           13 GLVPRGSEMHLLARLAPHLP-------YIRRYARALTGDQATGDHY-VRVALEAL-AAG--------ELVLDANLSPRVA   75 (286)
T ss_dssp             -------CCCHHHHHGGGHH-------HHHHHHHHHHSCHHHHHHH-HHHHHHHH-HTT--------SSCCCSSSCHHHH
T ss_pred             CCCCCCCCCEEHHHHCCCCC-------HHHHHHHHHHCCCCHHHHH-HHHHHHHH-HCC--------CCCCCCCCCCHHH
T ss_conf             86768889763444156885-------8999999984682304799-99999999-549--------5326888883078


Q ss_pred             HCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf             22652315777-----6789998880589999999961985999979899529889847
Q gi|254780701|r  420 VLTSFGQGSIA-----IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP  473 (495)
Q Consensus       420 iF~~F~r~~~~-----~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP  473 (495)
                      +|++|.|...+     .....+|+|+|+.|++++.+.+++.     +.+.+..+...++
T Consensus        76 Lf~~f~~i~~s~~~~~~~~~~~g~gl~~~i~~~l~~l~~~~-----r~~~~~~~~~~~~  129 (286)
T 3n0r_A           76 LYRVFHAIWLSSGAQLEVGHDQGLHAGDDAAQRLMRIAPRS-----RQAFLLTALEGFT  129 (286)
T ss_dssp             HHHHHHHHHSCTTC----CCCCCCCTTSHHHHHHHHHSCHH-----HHHHHHHHTTCCC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-----CCCCCCCCEECCC
T ss_conf             89988754101465455677652047899999861035445-----4210123221257


No 27 
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.66  E-value=0.00038  Score=52.64  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-----CC-CCCCCCCC
Q ss_conf             9998877765568860679887999999976985999998789978987854422652315777-----67-89998880
Q gi|254780701|r  367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA-----IK-SAEQGVGL  440 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~-----~~-~~~~GtGL  440 (495)
                      ++.+|+.-||.|||..- . ..|.|.+.  ++|.-.|+|.|+|.||++++++.+++++.----.     .+ ...|--|-
T Consensus        25 ~p~svvkELveNsiDA~-A-t~I~v~i~--~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TSK~~~~~dl~~~~t~GfRGe  100 (367)
T 3h4l_A           25 DLTTAVKELVDNSIDAN-A-NQIEIIFK--DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGE  100 (367)
T ss_dssp             SHHHHHHHHHHHHHHTT-C-SEEEEEEE--TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTH
T ss_pred             CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             88999999997776489-5-98999998--79846999998999889789987654205875553223311246664407


Q ss_pred             HHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             5899999999619859999798
Q gi|254780701|r  441 GLPIAQSIMANHGGQFLIRSKL  462 (495)
Q Consensus       441 GLaIvk~lve~hgG~i~v~S~~  462 (495)
                      +|+-...+     +++++.|..
T Consensus       101 AL~sI~~v-----s~l~I~S~~  117 (367)
T 3h4l_A          101 ALSSLCGI-----AKLSVITTT  117 (367)
T ss_dssp             HHHHHHHS-----SEEEEEEES
T ss_pred             HHHHHHHH-----CCEEEEEEE
T ss_conf             89988752-----564799850


No 28 
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.50  E-value=0.00081  Score=49.77  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--C---CCCCCCCC-CC
Q ss_conf             999887776556886067988799999997698599999878997898785442265231577--7---67899988-80
Q gi|254780701|r  367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI--A---IKSAEQGV-GL  440 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~--~---~~~~~~Gt-GL  440 (495)
                      .+.+++.-||.|||..- . ..|.|.+.  .+|...|+|.|+|.||++++++.++++++-.--  .   .+-..-|. |-
T Consensus        28 ~~~s~vkELieNsiDA~-A-t~I~i~i~--~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tSK~~~~~dl~~~~t~GfRGe  103 (348)
T 3na3_A           28 RPANAIKEMIENCLDAK-S-TSIQVIVK--EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGE  103 (348)
T ss_dssp             SHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTC
T ss_pred             CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCHH
T ss_conf             88999999986554489-9-88999999--89878999998998889899999975245767787554221026663289


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECC-CCEEEEEEE
Q ss_conf             58999999996198599997989-952988984
Q gi|254780701|r  441 GLPIAQSIMANHGGQFLIRSKLR-EGVEVIAIL  472 (495)
Q Consensus       441 GLaIvk~lve~hgG~i~v~S~~G-~Gt~f~v~L  472 (495)
                      +|+=.-.+     +++++.|+.. ......+.+
T Consensus       104 AL~sI~~~-----s~~~I~Sr~~~~~~~~~~~~  131 (348)
T 3na3_A          104 ALASISHV-----AHVTITTKTADGKCAYRASY  131 (348)
T ss_dssp             HHHHHHHS-----SEEEEEEECTTCSSEEEEEE
T ss_pred             HHHHHHHH-----CCEEEEEECCCCCCCCEEEE
T ss_conf             99999851-----77499961256764617998


No 29 
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.45  E-value=0.001  Score=48.88  Aligned_cols=87  Identities=14%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC-----CCCCC-CCCCCC
Q ss_conf             999887776556886067988799999997698599999878997898785442265231577-----76789-998880
Q gi|254780701|r  367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI-----AIKSA-EQGVGL  440 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~-----~~~~~-~~GtGL  440 (495)
                      .+.+++.-||.||+..- + ..|.|.+.  .+|.-.|+|+|+|.||++++++.++.+++...-     -.+.. .|--|-
T Consensus        34 ~~~svvkELieNSiDA~-A-t~I~I~v~--~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~d~~~~~t~GfRGe  109 (365)
T 1h7s_A           34 SLSTAVKELVENSLDAG-A-TNIDLKLK--DYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGE  109 (365)
T ss_dssp             CHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSS
T ss_pred             CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             88899999997787289-8-88999998--79843899998998759899864542023677662336533455774227


Q ss_pred             HHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             5899999999619859999798
Q gi|254780701|r  441 GLPIAQSIMANHGGQFLIRSKL  462 (495)
Q Consensus       441 GLaIvk~lve~hgG~i~v~S~~  462 (495)
                      +|+=...+     +++.+.|+.
T Consensus       110 aL~si~~~-----s~~~i~S~~  126 (365)
T 1h7s_A          110 ALSSLCAL-----SDVTISTCH  126 (365)
T ss_dssp             HHHHHHHH-----SEEEEEEEC
T ss_pred             HHHHHHHH-----CCEEEEEEC
T ss_conf             88888862-----451588843


No 30 
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.21  E-value=0.00054  Score=51.28  Aligned_cols=55  Identities=25%  Similarity=0.454  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCC
Q ss_conf             99988777655688606798879999999769859999987899789878544226523
Q gi|254780701|r  367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG  425 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~  425 (495)
                      .+.+++.-||.|||..- + ..|.|.+.  .+|.-.|+|+|+|.||++++++.++++++
T Consensus        24 ~~~~~vkELveNSiDA~-A-t~I~I~v~--~~g~~~I~V~DnG~GI~~~dl~~~~~r~~   78 (333)
T 1b63_A           24 RPASVVKELVENSLDAG-A-TRIDIDIE--RGGAKLIRIRDNGCGIKKDELALALARHA   78 (333)
T ss_dssp             SHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHCCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             78999999986302789-8-98999998--79765999998996768768888766410


No 31 
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.79  E-value=0.0028  Score=45.17  Aligned_cols=84  Identities=20%  Similarity=0.234  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHHCCCCCCCCC----C
Q ss_conf             999988777655688606798---87999999976985999998789978987--------85442265231577----7
Q gi|254780701|r  366 KGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEG--------EIPTVLTSFGQGSI----A  430 (495)
Q Consensus       366 ~~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e--------~~~~iF~~F~r~~~----~  430 (495)
                      .-|.+++.-+|.||+.---.|   ..|.|.+.  .++. .|+|.|+|.|||-+        -.+.||....-+++    +
T Consensus        51 ~GL~~l~~EildNavDe~~~g~~~~~I~V~i~--~d~~-sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~  127 (400)
T 1zxm_A           51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PENN-LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDE  127 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTTT-EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGG
T ss_pred             CEEEEEEEEEEECHHHHHHHCCCCCEEEEEEE--CCCC-EEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             70058998999965548865579847999997--7999-89999899653200215667321024677841315668986


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6789998880589999999961
Q gi|254780701|r  431 IKSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       431 ~~~~~~GtGLGLaIvk~lve~h  452 (495)
                      ++...+-+|+|.+.|-.+-+..
T Consensus       128 yk~sgGlhGVG~svvNalS~~~  149 (400)
T 1zxm_A          128 KKVTGGRNGYGAKLCNIFSTKF  149 (400)
T ss_dssp             CCCCSCCSSCHHHHHHHTEEEE
T ss_pred             CEEECCCCCCCHHHHHHCCHHH
T ss_conf             2363464452525551103411


No 32 
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=96.55  E-value=0.0054  Score=42.69  Aligned_cols=86  Identities=19%  Similarity=0.321  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC--
Q ss_conf             798999988777655688606798--8799999997698599999878997898785--------4422652315777--
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSIA--  430 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~~--  430 (495)
                      .|..-|.+++.-+|.||+...-+|  ..|.|.+.  +++  .|+|+|+|+|||-+..        +-||.-..-+++-  
T Consensus        28 t~~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~--~dg--~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~  103 (390)
T 1kij_A           28 TGVEGYHHLFKEILDNAVDEALAGYATEILVRLN--EDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ  103 (390)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG
T ss_pred             CCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEEC--CCC--EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf             9987221788766685666743699966999996--998--599998887266478667797101999989845676578


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             --6789998880589999999961
Q gi|254780701|r  431 --IKSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       431 --~~~~~~GtGLGLaIvk~lve~h  452 (495)
                        .+...+..|+|.++|--+-+..
T Consensus       104 ~~~k~sgG~nGvGa~l~NalS~~f  127 (390)
T 1kij_A          104 GAYKVSGGLHGVGASVVNALSEWT  127 (390)
T ss_dssp             SSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred             CCCCCCCCCCCCCCHHHHHCCHHE
T ss_conf             875302675764427652325203


No 33 
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.50  E-value=0.0033  Score=44.60  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCC----CC
Q ss_conf             99988777655688606798---879999999769859999987899789878--------5442265231577----76
Q gi|254780701|r  367 GMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSI----AI  431 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~----~~  431 (495)
                      -|.+++.-+|.||+.-.-+|   ..|.|.+. .+++  .|+|.|+|.|||-+.        .+-||....-+++    ++
T Consensus        64 Gl~~l~~EildNavDe~~~g~~~~~I~V~i~-~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~y  140 (418)
T 1pvg_A           64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK  140 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred             EEEEEEEEEEECHHHHHHCCCCCCEEEEEEE-CCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf             0024656899980247651688877999996-7998--899996990146104366786411578877403554457753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHC
Q ss_conf             789998880589999999961
Q gi|254780701|r  432 KSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       432 ~~~~~GtGLGLaIvk~lve~h  452 (495)
                      +...+.+|+|.++|-.+-+..
T Consensus       141 k~SGGlhGvGasvvNalS~~f  161 (418)
T 1pvg_A          141 KVTGGRNGYGAKLCNIFSTEF  161 (418)
T ss_dssp             CCCSCCSSCHHHHHHHTEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHH
T ss_conf             040787552640227663565


No 34 
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.50  E-value=0.0044  Score=43.49  Aligned_cols=83  Identities=19%  Similarity=0.378  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCCCC----
Q ss_conf             9999887776556886067--98879999999769859999987899789878--------544226523157776----
Q gi|254780701|r  366 KGMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSIAI----  431 (495)
Q Consensus       366 ~~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~~~----  431 (495)
                      .-|.+++.-+|+||+...-  ....|.|.+.  .++.  |+|+|+|+|||-+.        .+-||....-+++-.    
T Consensus        33 ~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~--~dgs--isV~ddGrGIPv~~h~~~~~~~~Elif~~L~tg~nfd~~~~  108 (391)
T 1ei1_A           33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADNS--VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSY  108 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--TTSC--EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSC
T ss_pred             CCCEEEEEEEEECHHHHHCCCCCCEEEEEEC--CCCE--EEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf             7220688888884323521499867999992--7982--99997998676777666685100899999713677799874


Q ss_pred             CCCCCCCCCHHHHHHHHHHHC
Q ss_conf             789998880589999999961
Q gi|254780701|r  432 KSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       432 ~~~~~GtGLGLaIvk~lve~h  452 (495)
                      +...+-.|+|.+++.-+-+..
T Consensus       109 ~~sgG~nGvGakl~NalS~~f  129 (391)
T 1ei1_A          109 KVSGGLHGVGVSVVNALSQKL  129 (391)
T ss_dssp             SSCSCCSSCHHHHHHHTEEEE
T ss_pred             EEECCCCCCCEEEEEEEECCE
T ss_conf             331688765427999961555


No 35 
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.46  E-value=0.0063  Score=42.13  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=45.0

Q ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHC--------CCCCCC--CCCCCCCCCCCCCHHHHHHHHHHH------
Q ss_conf             7999999976985999998789978987854422--------652315--777678999888058999999996------
Q gi|254780701|r  388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL--------TSFGQG--SIAIKSAEQGVGLGLPIAQSIMAN------  451 (495)
Q Consensus       388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF--------~~F~r~--~~~~~~~~~GtGLGLaIvk~lve~------  451 (495)
                      .|.|..  +.+.. .+.|.|||+|+.++++..-+        ..|.+.  +.....--|-.|+|+.=|=-+++.      
T Consensus        63 ~I~i~~--d~~~~-tl~i~D~GiGMt~~e~~~~lgtIa~Sgt~~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~  139 (677)
T 2cg9_A           63 FIRITP--KPEQK-VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISK  139 (677)
T ss_dssp             CEEEEE--EGGGT-EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEE
T ss_pred             EEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEE
T ss_conf             699997--58889-899995188889999999877771142599999854578601230476101467886163799970


Q ss_pred             ------------CCCEEEEE-----EECCCCEEEEEEE
Q ss_conf             ------------19859999-----7989952988984
Q gi|254780701|r  452 ------------HGGQFLIR-----SKLREGVEVIAIL  472 (495)
Q Consensus       452 ------------hgG~i~v~-----S~~G~Gt~f~v~L  472 (495)
                                  -+|...+.     ...|.||+.++.|
T Consensus       140 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~GT~I~L~l  177 (677)
T 2cg9_A          140 SNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL  177 (677)
T ss_dssp             CTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEE
T ss_pred             CCCCCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf             68888727999638970798403455677724899993


No 36 
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=96.40  E-value=0.011  Score=39.98  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             4798999988777655688606798--87999999976985999998789978987854422652315777678999888
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG  439 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtG  439 (495)
                      -.|+.-|.+++.-+|+||+.=--.|  ..|.|...  .++.  |+|+|+|+|||.+....++.---=.++.. +..+|.+
T Consensus        25 st~~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~--~Dg~--IsV~dnGrGIPv~~~~~l~~g~~f~~~~~-~~~gG~~   99 (369)
T 3cwv_A           25 DVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--GDGS--IALFCTSRTVTAENLVRVATGAGFLGRPP-GDGWGWD   99 (369)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTSC--EEEEEEESSCCHHHHHHHHTTTTGGGSSC-CCSTTTT
T ss_pred             CCCCCCCEEEEEEEEECCHHHHHCCCCCEEEEEEC--CCCC--EEEEECCCCCEEEEEEEEEECCCCCCCCC-CCCCCCC
T ss_conf             89998655899888653220764488877999999--9996--99992899952207788741023368777-6653466


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             05899999999619859999798995298898
Q gi|254780701|r  440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI  471 (495)
Q Consensus       440 LGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~  471 (495)
                      -|++.|    -..--.+.|+..- .|..+...
T Consensus       100 Gg~svv----NalS~~~~Vev~r-~~~~~~~~  126 (369)
T 3cwv_A          100 SMLVVS----LALSSRYQVDIWA-DGRQWRVM  126 (369)
T ss_dssp             SSHHHH----HHTEEEEEEEEEE-TTEEEEEE
T ss_pred             CEEEEE----EEEEEEEEEEEEE-CCEEEEEE
T ss_conf             539999----9982089999997-99799998


No 37 
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7}
Probab=96.16  E-value=0.0085  Score=41.00  Aligned_cols=59  Identities=19%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC-----------CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             7999999976985999998789978987854422652315-----------7776789998880589999999
Q gi|254780701|r  388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----------SIAIKSAEQGVGLGLPIAQSIM  449 (495)
Q Consensus       388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~-----------~~~~~~~~~GtGLGLaIvk~lv  449 (495)
                      .|.|..  +.+.. .|.|+|||+||..+++..-+.--.+.           ......--+..|+|+.=|=-++
T Consensus       120 ~I~I~~--Dk~~~-tltI~DnGIGMt~~el~~~LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGVGFySaFmVA  189 (272)
T 3ied_A          120 IIKIKP--DKEKK-TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVS  189 (272)
T ss_dssp             CEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTE
T ss_pred             EEEEEE--CCCCC-EEEEEECCEEECHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEEEC
T ss_conf             499887--58789-89999433234289998773555646539999864214443220123575417888760


No 38 
>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A*
Probab=96.13  E-value=0.0068  Score=41.87  Aligned_cols=108  Identities=19%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCCC----
Q ss_conf             8999988777655688606798--879999999769859999987899789878--------54422652315777----
Q gi|254780701|r  365 EKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSIA----  430 (495)
Q Consensus       365 ~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~~----  430 (495)
                      ..-|.+++.-+|.||+..--.|  ..|.+.+  ..++  .|+|+|+|+|||-+.        .+-||....-+++=    
T Consensus        19 ~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i--~~dg--~isV~ddG~GIPv~~h~~~~~~~~elif~~l~tg~nyd~~~   94 (203)
T 3g7e_A           19 GTGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS   94 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS--CEEEEECSSCCCCSCCTTTCCCHHHHHHHSTTCCSEECTTC
T ss_pred             CCCCEEEEEEEEEEHHHHHCCCCCCEEEEEE--CCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf             8727489998888344563159997689999--6799--79999899774564457669822068998984047788886


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC------CCEE---------------EEEEECCCCEEEEEEECHHH
Q ss_conf             6789998880589999999961------9859---------------99979899529889847247
Q gi|254780701|r  431 IKSAEQGVGLGLPIAQSIMANH------GGQF---------------LIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       431 ~~~~~~GtGLGLaIvk~lve~h------gG~i---------------~v~S~~G~Gt~f~v~LP~~~  476 (495)
                      .+...+..|+|+.++--+.+..      +|..               .+.+....||++++.-..++
T Consensus        95 ~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~~~~gT~V~F~PD~~~  161 (203)
T 3g7e_A           95 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLET  161 (203)
T ss_dssp             CEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECSCCEEEEEEEECTTT
T ss_pred             CEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCCCCCCEEEEEEECCCC
T ss_conf             1311675786728989862189999998999999998499298882352576899889999979310


No 39 
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.12  E-value=0.012  Score=39.88  Aligned_cols=63  Identities=21%  Similarity=0.341  Sum_probs=36.2

Q ss_pred             CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC------------CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             887999999976985999998789978987854422652315------------7776789998880589999999
Q gi|254780701|r  386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------------SIAIKSAEQGVGLGLPIAQSIM  449 (495)
Q Consensus       386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~------------~~~~~~~~~GtGLGLaIvk~lv  449 (495)
                      ++...|.+..+.+.. .|.|+|||+|+..+++..-+--..+.            ..+...--|-.|+|..=|=-++
T Consensus        60 ~~~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~lgtIa~Sgt~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa  134 (559)
T 1y4s_A           60 DGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA  134 (559)
T ss_dssp             CCCCCEEEEEETTTT-EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred             CCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             988279999738899-899996288899999998511325351899999845312554454553210012455446


No 40 
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=95.67  E-value=0.04  Score=35.30  Aligned_cols=39  Identities=15%  Similarity=0.151  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999999999999999998899999776
Q gi|254780701|r  220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH  258 (495)
Q Consensus       220 e~~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SH  258 (495)
                      +......+++..+..+.+..+..+.++..|++|+|+|||
T Consensus        69 eL~~~~~eL~~~~q~l~~~~~~L~~~~~ek~~fla~~sH  107 (107)
T 2no2_A           69 ELQVLQGSLETSAQSEANWAAEFAELEKERDSLVSGAAH  107 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999999999999999989999999966749


No 41 
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=95.56  E-value=0.02  Score=37.92  Aligned_cols=86  Identities=23%  Similarity=0.361  Sum_probs=43.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCC--------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH----HC
Q ss_conf             104798999988777655688606--------------798879999999769859999987899789878544----22
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFT--------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT----VL  421 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T--------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~----iF  421 (495)
                      .+|.|+.   --|+-|||||....              +.++...|++..+.+.. .+.|+|||+|+.++++..    |-
T Consensus        23 sLYs~~~---vflRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-tl~i~DnGiGMt~~el~~~LgtIa   98 (624)
T 2ioq_A           23 SLYSNKE---IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIA   98 (624)
T ss_dssp             HHSSCTT---HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHHHC
T ss_pred             CCCCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             3688831---669999872999999999987159131078888469999759889-899995388889999998766760


Q ss_pred             ----CCCCC---CCCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             ----65231---57776-789998880589999999
Q gi|254780701|r  422 ----TSFGQ---GSIAI-KSAEQGVGLGLPIAQSIM  449 (495)
Q Consensus       422 ----~~F~r---~~~~~-~~~~~GtGLGLaIvk~lv  449 (495)
                          ..|-+   .+... ..--|=.|+|+.=|=-++
T Consensus        99 ~Sgt~~f~~~~~~~~~~~~~~IGqFGvGfyS~FmVa  134 (624)
T 2ioq_A           99 KSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA  134 (624)
T ss_dssp             C---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC
T ss_conf             241799999866410244343542321200013337


No 42 
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.31  E-value=0.028  Score=36.56  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC--------CC---CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             879999999769859999987899789878544226--------52---31577767899988805899999999
Q gi|254780701|r  387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT--------SF---GQGSIAIKSAEQGVGLGLPIAQSIMA  450 (495)
Q Consensus       387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~--------~F---~r~~~~~~~~~~GtGLGLaIvk~lve  450 (495)
                      +.+.|++..+.+.. .+.|.|||+|+..+++..-+-        .|   .+-......--+=.|+|..=|--+++
T Consensus        80 ~~~~I~i~~D~~~~-~l~I~DnGIGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAd  153 (281)
T 3peh_A           80 KKLEIRISANKEKN-ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVAD  153 (281)
T ss_dssp             CCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEE
T ss_pred             CCEEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECC
T ss_conf             76269988739999-899997981567899997753313434388887644125523344320312267764067


No 43 
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=95.12  E-value=0.028  Score=36.60  Aligned_cols=108  Identities=18%  Similarity=0.279  Sum_probs=56.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHH------CC--------CCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             1047989999887776556886------06--------798--8799999997698599999878997898785442265
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVK------FT--------AIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS  423 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK------~T--------~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~  423 (495)
                      .+|.|+.-   -|+-|||||..      |.        +.+  ..|.|.+  +.+.. .+.|+|||+|+.++++..-.--
T Consensus        41 sLYS~~eV---FlRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~--d~~~~-tl~i~DnGIGMt~~El~~~Lgt  114 (666)
T 2o1u_A           41 SLYKNKEI---FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DKEKN-LLHVTDTGVGMTREELVKNLGT  114 (666)
T ss_dssp             TTSSSCTT---HHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHTTC
T ss_pred             HCCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHH
T ss_conf             04698327---599898749999999999863582002788884699986--59899-8999953888899999987232


Q ss_pred             CCCCCC---------------CCCCCCCCCCCHHHHHHHHHH------------------HCCCEEEEEEE----CCCCE
Q ss_conf             231577---------------767899988805899999999------------------61985999979----89952
Q gi|254780701|r  424 FGQGSI---------------AIKSAEQGVGLGLPIAQSIMA------------------NHGGQFLIRSK----LREGV  466 (495)
Q Consensus       424 F~r~~~---------------~~~~~~~GtGLGLaIvk~lve------------------~hgG~i~v~S~----~G~Gt  466 (495)
                      =-+-+.               +...--|-.|+|+.=|==.++                  --+|...++..    ++.||
T Consensus       115 Ia~Sgt~~fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~W~s~g~~~~~~~~~~~~~~~~GT  194 (666)
T 2o1u_A          115 IAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGT  194 (666)
T ss_dssp             -------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEECTTCCSSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCE
T ss_conf             30132899999987421012310333405774511342786799999854887750589358983574566556668973


Q ss_pred             EEEEEEC
Q ss_conf             9889847
Q gi|254780701|r  467 EVIAILP  473 (495)
Q Consensus       467 ~f~v~LP  473 (495)
                      +.++.|-
T Consensus       195 ~I~L~lk  201 (666)
T 2o1u_A          195 TITLVLK  201 (666)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
T ss_conf             8999705


No 44 
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=94.93  E-value=0.028  Score=36.64  Aligned_cols=88  Identities=15%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC
Q ss_conf             04798999988777655688606--7988799999997698599999878997898785--------4422652315777
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFT--AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSIA  430 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T--~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~~  430 (495)
                      .|.+..-|.+++.-+|+||+.--  .....|.|...  .++.  |+|.|+|+|||-+..        +-||.-+.-+++=
T Consensus        25 mYiGs~gl~~~~~EildNavDe~~~~~~~~I~V~i~--~dg~--isV~dnGrGIPv~~h~~~~~~~~elif~~L~tg~nf  100 (390)
T 1s16_A           25 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH--ADQS--LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF  100 (390)
T ss_dssp             GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTSC--EEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS
T ss_pred             CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEEC--CCCE--EEEEECCCCEEECCCCCCCCCCEEEEEEEEECCCCC
T ss_conf             678999852078699874650674299967999991--8986--999988995000456566877138889876036767


Q ss_pred             ----CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             ----6789998880589999999961
Q gi|254780701|r  431 ----IKSAEQGVGLGLPIAQSIMANH  452 (495)
Q Consensus       431 ----~~~~~~GtGLGLaIvk~lve~h  452 (495)
                          .+...+-.|+|.+++--+-+..
T Consensus       101 d~~~~k~sgG~nGvGakl~NalS~~f  126 (390)
T 1s16_A          101 SNKNYQFSGGLHGVGISVVNALSKRV  126 (390)
T ss_dssp             SSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred             CCCCCCEECCCCCCCEEEEEECCCEE
T ss_conf             88774230675762458989624107


No 45 
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=94.91  E-value=0.039  Score=35.35  Aligned_cols=36  Identities=17%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf             7999999976985999998789978987854422652
Q gi|254780701|r  388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF  424 (495)
Q Consensus       388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F  424 (495)
                      .+.|....+.+.. .+.|.|||+||.++++..-+-.+
T Consensus        63 ~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~LgtI   98 (269)
T 1qy5_A           63 ELTVKIKCDKEKN-LLHVTDTGVGMTREELVKNLGTI   98 (269)
T ss_dssp             CCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCC-EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             8358841268874-89998276333599999887766


No 46 
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=94.65  E-value=0.059  Score=33.78  Aligned_cols=56  Identities=21%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC----CC-------CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             879999999769859999987899789878544226----52-------3157776789998880589999
Q gi|254780701|r  387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT----SF-------GQGSIAIKSAEQGVGLGLPIAQ  446 (495)
Q Consensus       387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~----~F-------~r~~~~~~~~~~GtGLGLaIvk  446 (495)
                      ..|.|..  +.+.. .+.|+|||+|+.++++..-+-    ..       .+.. ....--+-.|+|..=|=
T Consensus        76 ~~I~i~~--d~~~~-tl~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-~d~~~IGqFGVGFyS~F  142 (236)
T 1uyl_A           76 LHINLIP--NKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAY  142 (236)
T ss_dssp             CCEEEEE--ETTTT-EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGG
T ss_pred             CEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC-CCCCHHHHCCCCEEEEC
T ss_conf             3799998--69887-89999689775789999872234303619999875501-56122211152135402


No 47 
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=94.62  E-value=0.052  Score=34.27  Aligned_cols=58  Identities=22%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC------------CCCCCCCCCCHHHHHHHH
Q ss_conf             7999999976985999998789978987854422652315777------------678999888058999999
Q gi|254780701|r  388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA------------IKSAEQGVGLGLPIAQSI  448 (495)
Q Consensus       388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~------------~~~~~~GtGLGLaIvk~l  448 (495)
                      .|.|.  .+.+.. .+.|.|||+||.++++..-|-...+.+..            .....+..|+|..=|--+
T Consensus        84 ~I~i~--~d~~~~-~l~I~DnGiGMt~~el~~~l~tia~S~~~~f~~~~~~~~~~~~~~IGqFGIGf~S~FmV  153 (235)
T 2ior_A           84 RVRVS--FDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV  153 (235)
T ss_dssp             CEEEE--EETTTT-EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT
T ss_pred             EEEEE--ECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             36888--648998-89999777332478866665022023238898753311334411002345002555330


No 48 
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=94.56  E-value=0.015  Score=38.94  Aligned_cols=104  Identities=14%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCC-
Q ss_conf             047989999887776556886067--988799999997698599999878997898785--------442265231577-
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSI-  429 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~-  429 (495)
                      .|.+..-|.+++.-+|+||+.---  .+..|.|.+  ..++.  |+|.|+|.|||-+..        +.||....-+++ 
T Consensus        11 MYiGs~gl~hl~~EildNaiDe~~~g~~~~i~v~~--~~d~s--itV~d~GrGIPv~~h~~~~~~~~e~i~t~l~ag~~f   86 (201)
T 3fv5_A           11 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL--HADQS--LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF   86 (201)
T ss_dssp             GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTSC--EEEEECSSCCCCSBCTTCSSBHHHHHHHCC------
T ss_pred             CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEE--ECCCC--EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCC
T ss_conf             26899887707868888135487548983799999--18980--999997896468586778971459999997035767


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf             ---76789998880589999999961985999979899529889847
Q gi|254780701|r  430 ---AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP  473 (495)
Q Consensus       430 ---~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP  473 (495)
                         ..+...+..|+|.+.+--+-+..    .++.. -.|-.+..++-
T Consensus        87 d~~~~k~sgG~~GvG~~~vNalS~~~----~v~v~-r~g~~~~q~f~  128 (201)
T 3fv5_A           87 SNKNYQFSGGLHGVGISVVNALSKRV----EVNVR-RDGQVYNIAFE  128 (201)
T ss_dssp             ---------------CHHHHHTEEEE----EEEEE-ETTEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCE----EEEEE-CCCEEEEEEEE
T ss_conf             88764113775760523447651616----99994-18989999983


No 49 
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A
Probab=94.50  E-value=0.029  Score=36.46  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCC--------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf             04798999988777655688606--------------7988799999997698599999878997898785442265231
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFT--------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ  426 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T--------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r  426 (495)
                      +|+|+.   --|+-||+||+...              ..++...|++..+.+.. .+.|.|+|+|+.++++..-|....+
T Consensus        23 LYs~~~---iflRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~L~ti~~   98 (220)
T 2wer_A           23 VYSNKE---IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-VLEIRDSGIGMTKAELINNLGTIAK   98 (220)
T ss_dssp             CCSSTT---HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGT-EEEEEECSCCCCHHHHHHHTTTSCC
T ss_pred             CCCCCC---EEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCC-EEEEECCCCEECHHHHHHHHHHHHC
T ss_conf             689975---018788867999999999986459501125788458998538887-7999618731138998765443403


Q ss_pred             CCC----------CCCCCCCCCCCHHHHHHH
Q ss_conf             577----------767899988805899999
Q gi|254780701|r  427 GSI----------AIKSAEQGVGLGLPIAQS  447 (495)
Q Consensus       427 ~~~----------~~~~~~~GtGLGLaIvk~  447 (495)
                      ...          .....-+=.|+|+.=|=-
T Consensus        99 S~t~~~~~~~~~~~~~~~IGqFGIGfyS~Fm  129 (220)
T 2wer_A           99 SGTKAFMEALSAGADVSMIGQFGVGFYSLFL  129 (220)
T ss_dssp             TTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG
T ss_pred             CCCHHHHHHCCCCCCCCCCCCCCEEEEEEEE
T ss_conf             3437777530136541303531004778886


No 50 
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A*
Probab=94.47  E-value=0.049  Score=34.49  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             79999999769859999987899789878544226
Q gi|254780701|r  388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT  422 (495)
Q Consensus       388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~  422 (495)
                      .+.|.+..+.+.. .+.|.|+|+|+.++++..-+-
T Consensus        67 ~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~lg  100 (236)
T 2gqp_A           67 ELTVKIKCDKEKN-LLHVTDTGVGMTREELVKNLG  100 (236)
T ss_dssp             CCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHH
T ss_conf             7169997658888-899984552215999988767


No 51 
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=93.38  E-value=0.087  Score=32.35  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH----HCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             879999999769859999987899789878544----22652315------77767899988805899999999
Q gi|254780701|r  387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT----VLTSFGQG------SIAIKSAEQGVGLGLPIAQSIMA  450 (495)
Q Consensus       387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~----iF~~F~r~------~~~~~~~~~GtGLGLaIvk~lve  450 (495)
                      -.|.|..  +.+.. .+.|+|||+|+..+++..    |...+++.      ++......+=.|+|..=|=-+++
T Consensus       104 ~~I~i~~--d~~~~-tl~I~DnGiGMt~~el~~~lgtIa~Sg~~~f~~~~~~~~d~~~IGqFGVGFyS~FMVAd  174 (264)
T 1yc1_A          104 LHINLIP--NKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAE  174 (264)
T ss_dssp             CCEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEE
T ss_pred             CEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCEECCCCCCEEEECCCCC
T ss_conf             3699987--68888-89999689877799999761650014638889875402564400001522122023477


No 52 
>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A*
Probab=93.33  E-value=0.072  Score=33.07  Aligned_cols=90  Identities=13%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHHHHHH-CCC-CCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7989999887776556886-067-98879999999769859999987899789878544226523157776789998880
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVK-FTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL  440 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK-~T~-~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL  440 (495)
                      .|..-|.+++.-+|+||+. +.. .+..|.|.+  ..++.  |+|+|+|.|||-+..+.               ++-.++
T Consensus        16 t~~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~--~~d~s--i~V~D~GRGIPvd~h~~---------------~~~~~~   76 (184)
T 3g75_A           16 TSERGLHHLVWEIVDNSIDEALAGYANQIEVVI--EKDNW--IKVTDNGRGIPVDIQEK---------------MGRPAV   76 (184)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTSCCEEEEEE--CGGGC--EEEEECSSCCCCCBCTT---------------TSCBHH
T ss_pred             CCCCCCEEEEEEEEEHHHHHHHCCCCCEEEEEE--CCCCC--EEEEEECCCCCCCCCCC---------------CCCCHH
T ss_conf             998522233101113566587559775459999--68996--99999357751110245---------------797513


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             58999999996198599997989952988984
Q gi|254780701|r  441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL  472 (495)
Q Consensus       441 GLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~L  472 (495)
                      -+-.....+-+.==.+.+++.- .|-.++.++
T Consensus        77 e~i~t~svvNALS~~l~v~v~r-dgk~~~q~f  107 (184)
T 3g75_A           77 EVILTSSVVNALSQDLEVYVHR-NETIYHQAY  107 (184)
T ss_dssp             HHHHTTCHHHHTEEEEEEEEEE-TTEEEEEEE
T ss_pred             HEEEEEEEEEECCCEEEEEEEE-CCEEEEEEE
T ss_conf             1887689947168849999998-999999996


No 53 
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=85.95  E-value=0.17  Score=29.88  Aligned_cols=27  Identities=7%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999988999997764201389999
Q gi|254780701|r  242 AEEENLAKSRFLASMSHELRTPLNAIL  268 (495)
Q Consensus       242 ae~a~~~Ks~FlA~~SHELRTPL~aI~  268 (495)
                      .+.++..|..|++.+||||+||.+.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  315 (368)
T 1wa9_A          289 QSRNTRIKEDIVKRLAETVSRPSDTVK  315 (368)
T ss_dssp             TTHHHHHHHHHHHHHHSCCCCCCTTSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999986555201789999


No 54 
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 1pk9_A* 1pk7_A* 1k9s_A* 1pke_A* 1ecp_A 1a69_A 1oty_A* 1ou4_A* 1ovg_A* 1otx_A* 1ov6_A* 1oum_A*
Probab=68.06  E-value=2.3  Score=20.24  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=40.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH
Q ss_conf             1047989999887776556886067988799999997698599999878997898785
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI  417 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~  417 (495)
                      .+.|||.|.+++-.+++.|..+++...+-...+-..  ++. .|.|.-+|+|.|....
T Consensus        20 il~Gdp~R~~~ia~~~l~~~~~~~~~r~~~~~tG~y--~g~-~v~v~~~GiG~~~aai   74 (253)
T 1vhw_A           20 LMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTY--KGR-RISVMGHGMGIPSCSI   74 (253)
T ss_dssp             EECSCHHHHHHHHHHHSEEEEEEECGGGCCEEEEEE--TTE-EEEEECCCSSHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEEE--CCE-EEEEEECCCCHHHHHH
T ss_conf             968997999999998620858987636927999999--999-9999987948889999


No 55 
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=66.57  E-value=5  Score=17.28  Aligned_cols=53  Identities=17%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH
Q ss_conf             104798999988777655688606798879999999769859999987899789878
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE  416 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~  416 (495)
                      .+.|||.|.++|- .+++|........+-...+-..  +|. .|.|.-+|+|.|...
T Consensus        43 i~~GDP~R~~~ia-~~ld~~~~~~~~R~~~~~tG~y--~G~-~V~v~s~GiG~psa~   95 (267)
T 2b94_A           43 LVVGDPGRVDKVK-MLCDSYVDLAYNREYKSVECTY--KGQ-KFLCVSHGVGSAGCA   95 (267)
T ss_dssp             EECSSHHHHHHHH-HTSSEEEECC---CEEEEEEEE--TTE-EEEEEEECTTCSCSH
T ss_pred             EECCCHHHHHHHH-HHCCCCEEEECCCCEEEEEEEE--CCE-EEEEEECCCCHHHHH
T ss_conf             9689979999999-9708854552128879999999--689-999995576688899


No 56 
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=62.86  E-value=3.5  Score=18.61  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH
Q ss_conf             104798999988777655688606798879999999769859999987899789878
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE  416 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~  416 (495)
                      .+.|||.|.+++-..++.|+.++....|-...+-.+  +|. .|.|.-+|+|-|...
T Consensus        17 i~~Gdp~Ra~~ia~~~~~~~~~~~~~r~~~~ytG~~--~g~-~V~v~~~GiG~~~aa   70 (235)
T 1z34_A           17 LMCGDPLRAKLIAETYLENPKLVNNVRGIQGYTGTY--KGK-PISVMGHGMGLPSIC   70 (235)
T ss_dssp             EEESCHHHHHHHHHHHCEEEEEEECGGGCCEEEEEE--TTE-EEEEEECCSSHHHHH
T ss_pred             EECCCHHHHHHHHHHHCCCCEEEEEECCEEEEEEEE--CCE-EEEEEECCCCHHHHH
T ss_conf             967997999999998703868953207848999999--999-999998897889999


No 57 
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=58.39  E-value=6.7  Score=16.18  Aligned_cols=18  Identities=17%  Similarity=0.337  Sum_probs=6.6

Q ss_pred             HHHHHHHHHCCC-EEEEEE
Q ss_conf             999999996198-599997
Q gi|254780701|r  443 PIAQSIMANHGG-QFLIRS  460 (495)
Q Consensus       443 aIvk~lve~hgG-~i~v~S  460 (495)
                      .+.+++.+...+ .|.+-+
T Consensus       206 ~la~~l~~~~~~~~I~vn~  224 (276)
T 1wma_A          206 IHARKLSEQRKGDKILLNA  224 (276)
T ss_dssp             HHHHHHHHHCTTSCCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEE
T ss_conf             9999998874788869999


No 58 
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural genomics, medical structural genomics of pathogenic protozoa consortium; HET: R1P; 1.44A {Trypanosoma brucei}
Probab=57.54  E-value=3.7  Score=18.43  Aligned_cols=74  Identities=9%  Similarity=0.050  Sum_probs=46.5

Q ss_pred             CCCCCEECCCCC----CHHCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCEEEEEEEECCCCCCHH-----
Q ss_conf             112210003676----1010479899998877765568860679-887999999976985999998789978987-----
Q gi|254780701|r  346 KNIEIFQKIDPS----LSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEG-----  415 (495)
Q Consensus       346 ~~~~l~~~~~~~----~~~v~~D~~~L~qvl~NLi~NAiK~T~~-gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e-----  415 (495)
                      .|....+.+.++    ...+.|||.|-+.|-.+|..+.+++... -|-...+-..  +| ..|+|.-||+|.|--     
T Consensus        29 ~g~~yHl~~~~~~ia~~vl~~GDP~Ra~~ia~~~~~~~~~~~~~~R~~~~~TG~y--~G-~~Vsv~stGmG~ps~~I~~~  105 (349)
T 3bje_A           29 DGTTLHLKCKSDELADRIIFVGDPGRVDVISGYFDKDSIRASRDHREIRFATGTY--KG-TPVTVISTGMGVDNIEIVLN  105 (349)
T ss_dssp             TSCCSSSCCCGGGCCSEEEEESSTTHHHHHHTTSCTTCCCEEEEETTEEEEEEEE--TT-EEEEEEECCSSHHHHHHHHH
T ss_pred             CCCEEECCCCHHHCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHHHHH
T ss_conf             9976702798231689189569989999999866507648854136679999999--99-99999963787625999999


Q ss_pred             HHHHHCC
Q ss_conf             8544226
Q gi|254780701|r  416 EIPTVLT  422 (495)
Q Consensus       416 ~~~~iF~  422 (495)
                      ++-.+|+
T Consensus       106 EL~~l~~  112 (349)
T 3bje_A          106 EIHALKE  112 (349)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
T ss_conf             9999744


No 59 
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ...
Probab=56.81  E-value=3.5  Score=18.64  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=38.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH
Q ss_conf             1047989999887776556886067988799999997698599999878997898785
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI  417 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~  417 (495)
                      .+.|||.|.+++-. ++.|+.+.....|-...+-..  +|. .|.|.-+|+|.|....
T Consensus        23 i~~Gdp~Ra~~ia~-~l~~~~~~~~~r~~~~ytG~~--~G~-~V~v~~~GiG~~~aai   76 (253)
T 3ddo_A           23 IVPGDPERVEKIAA-LMDKPVKLASHREFTSWRAEL--DGK-AVIVCSTGIGGPSTSI   76 (253)
T ss_dssp             EEESCGGGHHHHHT-TSEEEEEEEEETTEEEEEEEE--TTE-EEEEECCCSSHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHCCCEEECCCCCEEEEEEEE--CCE-EEEEEECCCCHHHHHH
T ss_conf             96899899999999-707873650238848999999--999-9999967867548999


No 60 
>1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A*
Probab=53.43  E-value=7.7  Score=15.67  Aligned_cols=53  Identities=15%  Similarity=0.097  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH
Q ss_conf             047989999887776556886067988799999997698599999878997898785
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI  417 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~  417 (495)
                      +.|||.|-+.+- .++.|..+.+...+--..+-..  +| ..|.|.-+|+|.|...+
T Consensus        23 ~~GDP~Ra~~ia-~~le~~~~v~~~R~~~~~tG~y--kG-~~V~v~~~GmG~psaai   75 (276)
T 1q1g_A           23 VVGDPGRVDKIK-VVCDSYVDLAYNREYKSVECHY--KG-QKFLCVSHGVGSAGCAV   75 (276)
T ss_dssp             EESCHHHHHHHH-TTSSEEEEEEEETTEEEEEEEE--TT-EEEEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHH-HHHCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHH
T ss_conf             469979999999-9818864652038769999999--89-99999835645888999


No 61 
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A
Probab=48.34  E-value=7.7  Score=15.67  Aligned_cols=53  Identities=17%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH
Q ss_conf             04798999988777655688606798879999999769859999987899789878
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE  416 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~  416 (495)
                      +.|||.|.+++-.+++.|..+++...+--..+ +.- +|. .|.|.=+|+|-|...
T Consensus        19 l~Gdp~R~~~ia~~~~~~~~~~~~~r~~~~y~-G~~-~g~-~v~~~~~GiG~~~aa   71 (235)
T 1odk_A           19 LPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYT-GLY-KGV-PVSVQTTGMGTPSAA   71 (235)
T ss_dssp             ECSCHHHHHHHHHHHCEEEEEEECGGGCCEEE-EEE-TTE-EEEEECCCSSHHHHH
T ss_pred             ECCCHHHHHHHHHHHCCCCEEEEECCCEEEEE-EEE-CCE-EEEEEECCCCHHHHH
T ss_conf             78997999999987532869996107858999-999-999-999996897888999


No 62 
>3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=47.36  E-value=8.2  Score=15.43  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|++-+|. .|..|.|
T Consensus       255 ~g~pedvA~~v~fL~S~~s~~i-TGq~i~V  283 (291)
T 3ijr_A          255 PGQPYELAPAYVYLASSDSSYV-TGQMIHV  283 (291)
T ss_dssp             CBCGGGTHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8799999999999956311697-6877997


No 63 
>2uzp_A Protein kinase C gamma type; transferase, polymorphism, metal-binding, zinc, calcium, zinc-finger, ATP-binding, spinocerebellar ataxia; HET: PLP; 2.0A {Homo sapiens} PDB: 1dsy_A* 3gpe_A*
Probab=46.90  E-value=9.7  Score=14.80  Aligned_cols=48  Identities=6%  Similarity=0.103  Sum_probs=33.1

Q ss_pred             HCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             6067988799999997698599999878997898785442265231577
Q gi|254780701|r  381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI  429 (495)
Q Consensus       381 K~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~  429 (495)
                      ++|...|.|.++++....+.+.|.|. .+.++++.+....-+||.++.-
T Consensus         2 ~~~~~~G~i~l~~~~~~~~~L~V~v~-~A~~L~~~d~~g~~Dpyv~v~l   49 (144)
T 2uzp_A            2 MHTERRGRLQLEIRAPTADEIHVTVG-EARNLIPMDPNGLSDPYVKLKL   49 (144)
T ss_dssp             CCCCSSCEEEEEEEEEETTEEEEEEE-EEESCCCCSTTSCCCEEEEEEE
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEEEE-ECCCCCCCCCCCCCCCEEEEEE
T ss_conf             86653556999999078998999999-6879988678999791799998


No 64 
>2ac7_A Purine nucleoside phosphorylase; alpha/beta fold, adenosine, sulfate ION, transferase; HET: ADN; 1.70A {Bacillus cereus} SCOP: c.56.2.1 PDB: 1xe3_A
Probab=46.30  E-value=8.5  Score=15.29  Aligned_cols=53  Identities=13%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH
Q ss_conf             10479899998877765568860679887999999976985999998789978987
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG  415 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e  415 (495)
                      .+.|||.|.+++-.+++.|.-++....+-...+-.+  +|. .|.+.-+|+|.|..
T Consensus        17 il~Gdp~r~~~ia~~~~~~~~~~~~~r~~~~ytG~~--~g~-~v~i~~~GiG~~~A   69 (235)
T 2ac7_A           17 LLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTY--KGK-RVSVQGTGMGVPSI   69 (235)
T ss_dssp             EECSSHHHHHHHHHHHCEEEEEEECGGGCCEEEEEE--TTE-EEEEECCCSSHHHH
T ss_pred             EECCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEEE--CCE-EEEEEECCCCHHHH
T ss_conf             968997999999998564858976317806899999--999-99999768478689


No 65 
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=42.84  E-value=11  Score=14.33  Aligned_cols=82  Identities=10%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             CCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH---------HCCCCC---------CEEEEEEEEECCCEEEEEEEE
Q ss_conf             11221000367610104798999988777655688---------606798---------879999999769859999987
Q gi|254780701|r  346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV---------KFTAIG---------GRVHVTVGWTSGRGQYISIKD  407 (495)
Q Consensus       346 ~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi---------K~T~~g---------G~V~v~~~~~~~~~~~i~V~D  407 (495)
                      -|..+.++.-...+.+..|+..+++++..++..+-         +|.|.|         +.|.++. |.+.+.+.|.|-=
T Consensus        16 ~G~Hli~Dlygc~~~~L~d~~~l~~~l~~a~~~~g~tvl~~~~~~f~p~GvT~~~lLaESHisiHT-wPE~~~a~iDifs   94 (142)
T 1vr7_A           16 LGRHLVAEFYECDREVLDNVQLIEQEMKQAAYESGATIVTSTFHRFLPYGVSGVVVISESHLTIHT-WPEYGYAAIDLFT   94 (142)
T ss_dssp             EEEEEEEEEESCCHHHHTCHHHHHHHHHHHHHHHTCCEEEEEEEECSSSCEEEEEEETTEEEEEEE-EGGGTEEEEEEEE
T ss_pred             CCEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEECCCCEEEEEE-ECCCCCEEEEEEC
T ss_conf             584999999867957868999999999999998699899777697089989999992463899999-2588838999981


Q ss_pred             CCCCCCHHHHHHHCCCCCCCC
Q ss_conf             899789878544226523157
Q gi|254780701|r  408 NGPGIAEGEIPTVLTSFGQGS  428 (495)
Q Consensus       408 tG~GI~~e~~~~iF~~F~r~~  428 (495)
                      =|.+..++..-.....+++.+
T Consensus        95 C~~~~~p~~~~~~l~~~F~~~  115 (142)
T 1vr7_A           95 CGEDVDPWKAFEHLKKALKAK  115 (142)
T ss_dssp             ESTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHHHHHHHCCC
T ss_conf             799899999999999972998


No 66 
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=39.34  E-value=12  Score=13.92  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=18.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|++-+|. .|..|.|
T Consensus       233 ~~~pediA~~v~fL~S~~s~~i-tG~~i~V  261 (266)
T 3o38_A          233 AAEPWEVAATIAFLASDYSSYM-TGEVVSV  261 (266)
T ss_dssp             CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8499999999999957043797-6856886


No 67 
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=38.81  E-value=11  Score=14.26  Aligned_cols=14  Identities=7%  Similarity=0.237  Sum_probs=5.1

Q ss_pred             ECCCCCCHHHHHHH
Q ss_conf             78997898785442
Q gi|254780701|r  407 DNGPGIAEGEIPTV  420 (495)
Q Consensus       407 DtG~GI~~e~~~~i  420 (495)
                      ..+++++++.....
T Consensus      2407 ~~~~~~~~~~~~~~ 2420 (2512)
T 2vz8_A         2407 QSHAGLDRHALSFA 2420 (2512)
T ss_dssp             --------------
T ss_pred             HCCCCCCHHHHHHH
T ss_conf             21434588899999


No 68 
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}
Probab=35.12  E-value=14  Score=13.42  Aligned_cols=18  Identities=11%  Similarity=0.320  Sum_probs=11.1

Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             047989999887776556
Q gi|254780701|r  361 VWADEKGMRQVILNLLSN  378 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~N  378 (495)
                      ..++|.-+-.++..|+++
T Consensus       199 ~~~~pedVA~av~fL~s~  216 (245)
T 3e9n_A          199 IYIEPKEIANAIRFVIDA  216 (245)
T ss_dssp             GGSCHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHCC
T ss_conf             881999999999999579


No 69 
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 1p33_A*
Probab=35.10  E-value=13  Score=13.77  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=8.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-..+.=|+|+.-.|.
T Consensus       255 g~pedvA~~v~fL~S~~s~~i  275 (291)
T 1e7w_A          255 SSAAEVSDVVIFLCSSKAKYI  275 (291)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             799999999999958501695


No 70 
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=34.67  E-value=13  Score=13.67  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=14.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             7989999887776556886067988799
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      ++|.-+-.++.-|+|..-.|. .|..|.
T Consensus       214 ~~pedvA~~v~fL~S~~s~~i-tG~~i~  240 (248)
T 3op4_A          214 GDPREIASAVAFLASPEAAYI-TGETLH  240 (248)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf             599999999999958222597-688699


No 71 
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=33.54  E-value=15  Score=13.23  Aligned_cols=20  Identities=20%  Similarity=0.059  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHHHHHHHCC
Q ss_conf             98999988777655688606
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T  383 (495)
                      +|.-+-.++.=|.|..-.|.
T Consensus       212 ~peevA~~v~fL~S~~a~~i  231 (244)
T 1zmo_A          212 RPDEMGALITFLASRRAAPI  231 (244)
T ss_dssp             CHHHHHHHHHHHHTTTTGGG
T ss_pred             CHHHHHHHHHHHHCCHHCCC
T ss_conf             99999999999958412596


No 72 
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=33.53  E-value=14  Score=13.49  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       206 ~~~pediA~~v~fL~S~~s~~i-tG~~i~V  234 (260)
T 1nff_A          206 AAEPVEVSNLVVYLASDESSYS-TGAEFVV  234 (260)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8799999999999967233597-6887998


No 73 
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=33.26  E-value=14  Score=13.43  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             0479899998877765568860679887999
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      -.++|.-+-+++.=|+|+.-.|. .|..|.|
T Consensus       213 R~g~pedvA~~v~fL~S~~s~~i-tG~~i~V  242 (255)
T 2dkn_A          213 RGSEPREVAEAIAFLLGPQASFI-HGSVLFV  242 (255)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             98399999999999958233795-6827898


No 74 
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=33.13  E-value=14  Score=13.33  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|.+-.|. .|..|.|
T Consensus       229 ~g~p~dvA~~v~fL~S~~a~~i-tG~~i~v  257 (265)
T 3lf2_A          229 LGKPIEAARAILFLASPLSAYT-TGSHIDV  257 (265)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8099999999999958153695-6834788


No 75 
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=32.97  E-value=14  Score=13.37  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=10.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|.|+.-+|.
T Consensus       231 ~~pediA~~v~fL~Sd~s~~i  251 (278)
T 2bgk_A          231 LRAEDVADAVAYLAGDESKYV  251 (278)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             199999999999967143596


No 76 
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=32.63  E-value=15  Score=13.29  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=14.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.=|+|+.-.|. .|..|.|
T Consensus       243 g~pedvA~~v~fL~S~~s~~i-TG~~i~V  270 (276)
T 2b4q_A          243 GRPEEMAALAISLAGTAGAYM-TGNVIPI  270 (276)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             099999999999967322697-6874867


No 77 
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=32.60  E-value=15  Score=13.21  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHHHH-HHHHHHCC
Q ss_conf             7989999887776-55688606
Q gi|254780701|r  363 ADEKGMRQVILNL-LSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NL-i~NAiK~T  383 (495)
                      ++|.-+-.++.=| .|.+-+|.
T Consensus       210 ~~pediA~~v~fLa~S~~s~~i  231 (244)
T 1edo_A          210 GQPENVAGLVEFLALSPAASYI  231 (244)
T ss_dssp             BCHHHHHHHHHHHHHCSGGGGC
T ss_pred             CCHHHHHHHHHHHHCCCHHCCC
T ss_conf             0999999999999779300795


No 78 
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=32.55  E-value=15  Score=13.27  Aligned_cols=16  Identities=13%  Similarity=0.345  Sum_probs=6.1

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             7989999887776556
Q gi|254780701|r  363 ADEKGMRQVILNLLSN  378 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~N  378 (495)
                      ++|.-+-+++.-|.+|
T Consensus       230 g~peevA~~v~fL~s~  245 (265)
T 2o23_A          230 GDPAEYAHLVQAIIEN  245 (265)
T ss_dssp             BCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHC
T ss_conf             2999999999999864


No 79 
>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A*
Probab=32.45  E-value=15  Score=13.10  Aligned_cols=21  Identities=19%  Similarity=0.055  Sum_probs=9.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.-|.|+.-.|-
T Consensus       221 ~~peeva~~v~fL~S~~s~~i  241 (261)
T 1ulu_A          221 ITQEEVGNLGLFLLSPLASGI  241 (261)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             599999999999838322790


No 80 
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3ku4_A 3kuk_A* 3kvr_A 3kvy_A
Probab=32.33  E-value=11  Score=14.38  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=49.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHH-HHCCCCCCEEEEEEEEECC----CEEEEEEEECCCCCCH-----HHHHHHC-------C
Q ss_conf             10479899998877765568-8606798879999999769----8599999878997898-----7854422-------6
Q gi|254780701|r  360 SVWADEKGMRQVILNLLSNA-VKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAE-----GEIPTVL-------T  422 (495)
Q Consensus       360 ~v~~D~~~L~qvl~NLi~NA-iK~T~~gG~V~v~~~~~~~----~~~~i~V~DtG~GI~~-----e~~~~iF-------~  422 (495)
                      ++-|||.|.+++-.++..|+ ++..  +..+.--++..+-    ....|+|.-||+|+|-     +|+-.++       .
T Consensus        75 ~~~GdP~R~~~iA~~~~~~~~l~~~--~re~~~~~g~~~ry~~YKg~pVsv~S~GMG~PS~~I~l~EL~kL~~~a~~g~~  152 (328)
T 3euf_A           75 CVGGSPSRMKAFIRCVGAELGLDCP--GRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLHELIKLLYYARCSNV  152 (328)
T ss_dssp             EEESCHHHHHHHHHHHHHHHTCCCT--TCCCCCTTTTCCSCCEEEETTEEEEECCSSHHHHHHHHHHHHHHHHHTTCBSC
T ss_pred             EECCCHHHHHHHHHHHHHHCCCCCC--CCCHHHHCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9079989999999999865267778--85331110454101057473799994688710389999999986513036862


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC--CCCEEEE
Q ss_conf             5231577767899988805899999999619859999798--9952988
Q gi|254780701|r  423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL--REGVEVI  469 (495)
Q Consensus       423 ~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~--G~Gt~f~  469 (495)
                      .|-|++.+      | |+++         --|++-+.+.-  ..|+...
T Consensus       153 tiIRIGTc------G-gl~i---------~vGdvVIa~~Av~~~~~~~~  185 (328)
T 3euf_A          153 TIIRIGTS------G-GIGL---------EPGTVVITEQAVDTCFKAEF  185 (328)
T ss_dssp             EEEEEEEE------E-ESSS---------CTTCEEEEEEEECTTSCSEE
T ss_pred             EEEEEECC------C-CCCC---------CCCCEEEECEEECCCCCCEE
T ss_conf             79998556------8-7789---------99989997402616787314


No 81 
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=32.24  E-value=15  Score=13.20  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99988777655688606
Q gi|254780701|r  367 GMRQVILNLLSNAVKFT  383 (495)
Q Consensus       367 ~L~qvl~NLi~NAiK~T  383 (495)
                      -+-.++.=|.|+.-.|.
T Consensus       235 dvA~~v~fL~S~~s~~i  251 (265)
T 1h5q_A          235 EMTGQAILLLSDHATYM  251 (265)
T ss_dssp             GGHHHHHHHHSGGGTTC
T ss_pred             HHHHHHHHHHCCHHCCC
T ss_conf             99999999956500797


No 82 
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=32.19  E-value=15  Score=13.19  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus       238 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V  266 (302)
T 1w6u_A          238 LGTVEELANLAAFLCSDYASWI-NGAVIKF  266 (302)
T ss_dssp             CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999957122697-7845898


No 83 
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta-hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A*
Probab=32.15  E-value=15  Score=13.10  Aligned_cols=28  Identities=21%  Similarity=0.191  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.-|.|..-+|. .|..|.|
T Consensus       226 ~~p~diA~~v~fL~S~~a~~i-tG~~i~v  253 (260)
T 1x1t_A          226 VTPEQLGGTAVFLASDAAAQI-TGTTVSV  253 (260)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             499999999999947132696-6887887


No 84 
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B}
Probab=32.06  E-value=15  Score=13.16  Aligned_cols=29  Identities=14%  Similarity=0.264  Sum_probs=17.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus       221 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V  249 (256)
T 3ezl_A          221 LGSPDEIGSIVAWLASEESGFS-TGADFSL  249 (256)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8599999999999948301697-7853887


No 85 
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=32.02  E-value=15  Score=13.08  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=15.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|.| .|. .|..|.|
T Consensus       218 ~g~peeiA~~v~fL~S~a-~~i-TGq~i~v  245 (270)
T 1yde_A          218 MGQPAEVGAAAVFLASEA-NFC-TGIELLV  245 (270)
T ss_dssp             CBCHHHHHHHHHHHHHHC-TTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCC-CCC-CCCEEEE
T ss_conf             849999999999993705-897-5864898


No 86 
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=32.02  E-value=15  Score=13.15  Aligned_cols=40  Identities=20%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf             4798999988777655688606798879999999769859999987899
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP  410 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~  410 (495)
                      .++|.-+-.++.=|+||  +|. .|..+.|    +.+..  +.-.|.|.
T Consensus       221 ~~~peevA~~v~fL~s~--~~i-tG~~i~V----dGG~~--~~~~~~~~  260 (267)
T 2gdz_A          221 ILDPPLIANGLITLIED--DAL-NGAIMKI----TTSKG--IHFQDYGS  260 (267)
T ss_dssp             CBCHHHHHHHHHHHHHC--TTC-SSCEEEE----ETTTE--EEECCCCS
T ss_pred             CCCHHHHHHHHHHHHCC--CCC-CCCEEEE----CCCCE--EECCCCCC
T ss_conf             83999999999999767--889-9888998----99972--15168997


No 87 
>3d7l_A LIN1944 protein; APC89317, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=32.00  E-value=16  Score=13.04  Aligned_cols=12  Identities=8%  Similarity=-0.227  Sum_probs=5.2

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             479899998877
Q gi|254780701|r  362 WADEKGMRQVIL  373 (495)
Q Consensus       362 ~~D~~~L~qvl~  373 (495)
                      ..|+..+++++.
T Consensus        76 ~~~~e~~~~~~~   87 (202)
T 3d7l_A           76 ELTPEKNAVTIS   87 (202)
T ss_dssp             GCCHHHHHHHHH
T ss_pred             HCCHHHHHHHHH
T ss_conf             599999999999


No 88 
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=31.99  E-value=16  Score=13.04  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-.|. .|..|.|
T Consensus       240 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V  268 (277)
T 3gvc_A          240 MAAPEEMAGIVVFLLSDDASMI-TGTTQIA  268 (277)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             7599999999999957422696-6877998


No 89 
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=31.95  E-value=16  Score=13.06  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus       225 g~pedvA~~v~fL~S~~s~~i-TG~~i~V  252 (260)
T 2zat_A          225 GNPEDCAGIVSFLCSEDASYI-TGETVVV  252 (260)
T ss_dssp             BCGGGGHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             899999999999958222696-6857887


No 90 
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=31.86  E-value=16  Score=13.04  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=10.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-+.+.-|+|+.-.|.
T Consensus       240 g~p~dvA~~v~fL~S~~s~~i  260 (276)
T 1mxh_A          240 ASAAQIADAIAFLVSKDAGYI  260 (276)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             999999999999948411693


No 91 
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3itd_A
Probab=31.82  E-value=15  Score=13.11  Aligned_cols=27  Identities=15%  Similarity=0.121  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             7989999887776556886067988799
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      ++|.-+-.++.=|.|+.-.|. .|..|.
T Consensus       238 g~peevA~~v~fL~S~~s~~i-tG~~i~  264 (270)
T 3is3_A          238 GWPQDVANVVGFLVSKEGEWV-NGKVLT  264 (270)
T ss_dssp             BCHHHHHHHHHHHTSGGGTTC-CSCEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf             799999999999958343594-686487


No 92 
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=31.77  E-value=15  Score=13.09  Aligned_cols=22  Identities=9%  Similarity=-0.059  Sum_probs=13.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             4798999988777655688606
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      +++|.-+..+..=|+|..-.|.
T Consensus       214 ~~~p~dia~~v~fL~S~~a~~i  235 (274)
T 3e03_A          214 CRRPEIMADAAHAVLTREAAGF  235 (274)
T ss_dssp             SBCTHHHHHHHHHHHTSCCTTC
T ss_pred             CCCHHHHHHHHHHHHCHHHCCC
T ss_conf             6999999999999959165398


No 93 
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=31.59  E-value=16  Score=13.05  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=11.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|+|+.-+|.
T Consensus       217 g~pediA~~v~fL~S~~s~~i  237 (251)
T 1zk4_A          217 GEPNDIAYICVYLASNESKFA  237 (251)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             299999999999957332596


No 94 
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=31.57  E-value=16  Score=13.05  Aligned_cols=28  Identities=36%  Similarity=0.404  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.=|+|+.-.|. .|..|.|
T Consensus       210 ~~p~diA~~v~fL~S~~s~~i-tG~~i~V  237 (244)
T 1cyd_A          210 AEVEDVVNSILFLLSDRSAST-SGGGILV  237 (244)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSSEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             099999999999957422696-7834895


No 95 
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=31.51  E-value=16  Score=12.98  Aligned_cols=29  Identities=14%  Similarity=0.121  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|..-+|. .|..|.|
T Consensus       223 ~~~peevA~~v~fL~S~~s~~i-tG~~i~v  251 (258)
T 3a28_C          223 PSVPEDVAGLVSFLASENSNYV-TGQVMLV  251 (258)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8799999999999957322596-6876997


No 96 
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Probab=31.34  E-value=16  Score=12.96  Aligned_cols=28  Identities=14%  Similarity=0.105  Sum_probs=16.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.-|.|+.-.|. .|..|.|
T Consensus       254 ~~peevA~~v~fL~S~~s~~i-TG~~i~v  281 (297)
T 1d7o_A          254 LTADEVGNAAAFLVSPLASAI-TGATIYV  281 (297)
T ss_dssp             BCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             899999999999958411696-7864777


No 97 
>1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2
Probab=31.28  E-value=16  Score=12.95  Aligned_cols=29  Identities=7%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|.+-.|. .|..|.|
T Consensus       221 ~g~pedva~~v~fL~S~~s~~i-TG~~i~v  249 (256)
T 1k2w_A          221 MGRAEDLTGMAIFLATPEADYI-VAQTYNV  249 (256)
T ss_dssp             CBCHHHHHHHHHHTTSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999957143596-6852887


No 98 
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=31.22  E-value=16  Score=12.97  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             7989999887776556886067988799
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      ++|.-+-.++.-|+|..-.|. .|..|.
T Consensus       207 ~~pedia~~v~fL~S~~s~~i-TG~~i~  233 (245)
T 1uls_A          207 GKPLEVAYAALFLLSDESSFI-TGQVLF  233 (245)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf             499999999999956122697-687599


No 99 
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=31.15  E-value=16  Score=12.95  Aligned_cols=29  Identities=31%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-.|. .|..|.|
T Consensus       233 ~g~pediA~~v~fL~Sd~s~~i-TGq~i~V  261 (303)
T 1yxm_A          233 IGVPEEVSSVVCFLLSPAASFI-TGQSVDV  261 (303)
T ss_dssp             CBCTHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8399999999999957312696-7857886


No 100
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=31.09  E-value=16  Score=12.94  Aligned_cols=21  Identities=10%  Similarity=0.237  Sum_probs=9.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|.|+.-.|.
T Consensus       217 g~pediA~~v~fL~S~~s~~i  237 (259)
T 3edm_A          217 GSSEDVAGLVAFLASDDAAYV  237 (259)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             599999999999958401597


No 101
>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=31.07  E-value=7.9  Score=15.58  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-----CCC
Q ss_conf             047989999887776556886067988799999997698599999878997898785442265231577767-----899
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-----SAE  435 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~-----~~~  435 (495)
                      +.+|+.....-+..++...   ...|-.|-|-+...-.....+   --|. =+++--..+|..+.+.|...-     ...
T Consensus         9 v~g~~~~~~~~i~~~~~~~---~~~~~~vgvl~~~~~~~~~~~---~lg~-~~~~~A~~Ly~~LR~~D~~~vd~I~~e~~   81 (105)
T 2yv4_A            9 VEGPREKVKGKITELVKEL---KERGKKVGVIGSESYNADEFF---FLGS-SVEEVAKNLFKALRYMDKAGVDVVIAEGV   81 (105)
T ss_dssp             EEECHHHHHHHHHHHHHHH---HHTTCCEEEEESSCTTCSEEE---ECCS-SHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHHH---HHCCCEEEEEECCCCCCCEEE---ECCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9798699999999999998---852985999934765775489---7798-99999999999999982579998999818


Q ss_pred             CCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             9888058999999996198599
Q gi|254780701|r  436 QGVGLGLPIAQSIMANHGGQFL  457 (495)
Q Consensus       436 ~GtGLGLaIvk~lve~hgG~i~  457 (495)
                      +.+|+|++|--+|-.+-||+|-
T Consensus        82 ~~~g~g~AImnRL~KAA~~~ii  103 (105)
T 2yv4_A           82 EERGLGLAVMNRLRKASGYKIV  103 (105)
T ss_dssp             SGGGHHHHHHHHC---CCCEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCCCC
T ss_conf             9978189999999986568975


No 102
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=31.01  E-value=16  Score=12.92  Aligned_cols=16  Identities=6%  Similarity=0.044  Sum_probs=7.1

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             7989999887776556
Q gi|254780701|r  363 ADEKGMRQVILNLLSN  378 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~N  378 (495)
                      .+|..+...+..++++
T Consensus       196 ~~pe~va~~v~~~l~~  211 (236)
T 1ooe_A          196 TPLSFISEHLLKWTTE  211 (236)
T ss_dssp             BCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             9999999999999659


No 103
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp}
Probab=30.98  E-value=16  Score=12.91  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=14.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             798999988777655688606798879
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRV  389 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V  389 (495)
                      ++|.-+-.++.=|+|++-+|. .|..|
T Consensus       213 ~~pedvA~~v~fL~S~~a~~i-tG~~i  238 (247)
T 3lyl_A          213 GEPKDIAAAVAFLASEEAKYI-TGQTL  238 (247)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEE
T ss_conf             799999999999948022697-68748


No 104
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A*
Probab=30.82  E-value=16  Score=12.89  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|.|+.-.|.
T Consensus       216 ~~pediA~~v~fL~S~~s~~i  236 (248)
T 2pnf_A          216 GSPEEVANVVLFLCSELASYI  236 (248)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             199999999999958511597


No 105
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=30.73  E-value=16  Score=12.88  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=11.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|.|+.-+|.
T Consensus       213 ~~pedvA~~v~fL~S~~a~~i  233 (246)
T 2uvd_A          213 GEAQDIANAVTFFASDQSKYI  233 (246)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             799999999999948222697


No 106
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=30.69  E-value=16  Score=12.88  Aligned_cols=11  Identities=36%  Similarity=0.507  Sum_probs=4.4

Q ss_pred             HCCCCCCEEEEEE
Q ss_conf             6067988799999
Q gi|254780701|r  381 KFTAIGGRVHVTV  393 (495)
Q Consensus       381 K~T~~gG~V~v~~  393 (495)
                      .+-+. | |+|.+
T Consensus       188 El~~~-g-IrVn~  198 (272)
T 2nwq_A          188 DLQGT-G-VRVTN  198 (272)
T ss_dssp             TCTTS-C-CEEEE
T ss_pred             HHCCC-C-EEEEE
T ss_conf             85746-8-39989


No 107
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 1mg5_A*
Probab=30.67  E-value=16  Score=12.87  Aligned_cols=12  Identities=17%  Similarity=-0.011  Sum_probs=4.8

Q ss_pred             HHCCCCCCEEEEEE
Q ss_conf             86067988799999
Q gi|254780701|r  380 VKFTAIGGRVHVTV  393 (495)
Q Consensus       380 iK~T~~gG~V~v~~  393 (495)
                      ..+.+. | |+|.+
T Consensus       167 ~e~~~~-g-IrVn~  178 (254)
T 1sby_A          167 KLAPIT-G-VTAYS  178 (254)
T ss_dssp             HHHHHH-S-EEEEE
T ss_pred             HHCCCC-C-EEEEE
T ss_conf             765555-9-69999


No 108
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A*
Probab=30.57  E-value=16  Score=12.86  Aligned_cols=29  Identities=14%  Similarity=0.176  Sum_probs=21.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|.+-.|. .|..|.|
T Consensus       218 ~g~peeiA~~v~fL~S~~a~~i-tG~~i~v  246 (261)
T 1gee_A          218 IGEPEEIAAVAAWLASSEASYV-TGITLFA  246 (261)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8799999999999957412696-6876997


No 109
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=30.54  E-value=16  Score=12.86  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|++-.|. .|..|.|
T Consensus       219 ~g~p~dvA~~v~fL~S~~a~~i-tG~~i~v  247 (254)
T 2wsb_A          219 CGEPSEIAAAALFLASPAASYV-TGAILAV  247 (254)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8199999999999967133596-6865887


No 110
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=30.33  E-value=17  Score=12.83  Aligned_cols=28  Identities=7%  Similarity=0.166  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.-|.|+.-.|. .|..|.|
T Consensus       242 g~peevA~~v~fL~S~~s~~i-TG~~i~V  269 (274)
T 1ja9_A          242 GYPADIGRAVSALCQEESEWI-NGQVIKL  269 (274)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             899999999999957222596-6863896


No 111
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=30.30  E-value=17  Score=12.83  Aligned_cols=12  Identities=8%  Similarity=0.335  Sum_probs=5.0

Q ss_pred             HHCCCCCCEEEEEE
Q ss_conf             86067988799999
Q gi|254780701|r  380 VKFTAIGGRVHVTV  393 (495)
Q Consensus       380 iK~T~~gG~V~v~~  393 (495)
                      ..+.+. | |+|.+
T Consensus       250 ~ela~~-g-IRVN~  261 (328)
T 2qhx_A          250 LELAPL-Q-IRVNG  261 (328)
T ss_dssp             HHHGGG-T-EEEEE
T ss_pred             HHHCCC-C-EEEEE
T ss_conf             996757-7-48999


No 112
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A*
Probab=30.15  E-value=17  Score=12.81  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|++-.|. .|..|.|
T Consensus       249 ~g~pediA~~v~fL~S~~s~~i-TG~~i~V  277 (291)
T 3cxt_A          249 WGEAEDLMGPAVFLASDASNFV-NGHILYV  277 (291)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8099999999999957232697-6877997


No 113
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, lipid metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=30.00  E-value=17  Score=12.79  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       223 ~~~pedvA~~v~fL~S~~s~~i-tG~~i~v  251 (264)
T 2pd6_A          223 LGDPEDVADVVAFLASEDSGYI-TGTSVEV  251 (264)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8399999999999958422597-5867998


No 114
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=29.83  E-value=17  Score=12.77  Aligned_cols=29  Identities=31%  Similarity=0.415  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|+.-.|. .|..|.|
T Consensus       209 ~~~peevA~~v~fL~S~~a~~i-tG~~i~v  237 (244)
T 3d3w_A          209 FAEVEHVVNAILFLLSDRSGMT-TGSTLPV  237 (244)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999957322697-6887887


No 115
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum tls} SCOP: c.2.1.2
Probab=29.69  E-value=17  Score=12.75  Aligned_cols=14  Identities=0%  Similarity=0.002  Sum_probs=5.0

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             98999988777655
Q gi|254780701|r  364 DEKGMRQVILNLLS  377 (495)
Q Consensus       364 D~~~L~qvl~NLi~  377 (495)
                      .|.-+-..+..|++
T Consensus       209 ~PediA~~v~~l~s  222 (244)
T 2bd0_A          209 MPEDIAAPVVQAYL  222 (244)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             99999999999967


No 116
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=29.67  E-value=17  Score=12.75  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|+.-.|. .|..|.|
T Consensus       249 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V  277 (283)
T 1g0o_A          249 VGLPIDIARVVCFLASNDGGWV-TGKVIGI  277 (283)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8199999999999968432482-6872868


No 117
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=29.47  E-value=17  Score=12.72  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|.+-+|. .|..|.|
T Consensus       212 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V  240 (249)
T 1o5i_A          212 MAKPEEIASVVAFLCSEKASYL-TGQTIVV  240 (249)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999958122697-5856888


No 118
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=29.35  E-value=17  Score=12.70  Aligned_cols=53  Identities=25%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf             479899998877765568860679887999999976985999998789978987854422652
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF  424 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F  424 (495)
                      .++|.-+-.++.=|+|++-.|. .|..|.|     ++|.-   +. .-||.|+...+.=++.+
T Consensus       207 ~g~p~eiA~~v~fL~S~~a~~i-tG~~i~v-----DGG~s---~~-~~~~~~~~~~~~~~~~~  259 (263)
T 2a4k_A          207 AGRPEEVAQAALFLLSEESAYI-TGQALYV-----DGGRS---IV-GPPGLPPGFGPKGGERH  259 (263)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE-----STTTT---TC------------------
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE-----CCCCC---CC-CCCCCCCCCCCCCCCCC
T ss_conf             8499999999999957322696-6866996-----96906---48-89999998899977765


No 119
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix K1}
Probab=29.12  E-value=17  Score=12.67  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=8.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|.|+.-.|.
T Consensus       227 g~pedvA~~v~fL~S~~s~~i  247 (260)
T 2z1n_A          227 GKPEELASVVAFLASEKASFI  247 (260)
T ss_dssp             CCHHHHHHHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             299999999999958432596


No 120
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=29.09  E-value=17  Score=12.67  Aligned_cols=29  Identities=17%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|..-+|. .|..|.|
T Consensus       222 ~~~pedia~~v~fL~S~~s~~i-TG~~i~V  250 (260)
T 2ae2_A          222 MGEPKELAAMVAFLCFPAASYV-TGQIIYV  250 (260)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999968322696-6847996


No 121
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810}
Probab=28.83  E-value=17  Score=12.64  Aligned_cols=11  Identities=9%  Similarity=0.060  Sum_probs=3.9

Q ss_pred             CCCCEEEEEEE
Q ss_conf             89952988984
Q gi|254780701|r  462 LREGVEVIAIL  472 (495)
Q Consensus       462 ~G~Gt~f~v~L  472 (495)
                      ++.+-..-+++
T Consensus       210 ~~~~~v~g~~i  220 (230)
T 3guy_A          210 IGNGYVSDITV  220 (230)
T ss_dssp             ETTEEEEEEEE
T ss_pred             CCCCCCCCEEE
T ss_conf             65596878699


No 122
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=28.75  E-value=17  Score=12.63  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHH-HHHHCCCCCCEEE
Q ss_conf             798999988777655-6886067988799
Q gi|254780701|r  363 ADEKGMRQVILNLLS-NAVKFTAIGGRVH  390 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~-NAiK~T~~gG~V~  390 (495)
                      ++|.-+-+++.=|.| +|-+|. .|..|.
T Consensus       230 g~p~dvA~~v~fL~S~~as~~i-tG~~i~  257 (280)
T 1xkq_A          230 GKPEHIANIILFLADRNLSFYI-LGQSIV  257 (280)
T ss_dssp             BCHHHHHHHHHHHHCHHHHTTC-CSCEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHCCC-CCCEEE
T ss_conf             1999999999999196251781-282578


No 123
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=28.64  E-value=18  Score=12.61  Aligned_cols=20  Identities=10%  Similarity=0.107  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCC
Q ss_conf             98999988777655688606
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T  383 (495)
                      +|.-+-.++.=|+|++-.|.
T Consensus       253 ~pediA~~v~fL~S~~a~~i  272 (285)
T 2c07_A          253 TPEEVANLACFLSSDKSGYI  272 (285)
T ss_dssp             CHHHHHHHHHHHHSGGGTTC
T ss_pred             CHHHHHHHHHHHHCCHHCCC
T ss_conf             99999999999948022697


No 124
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovarkurstaki str}
Probab=28.56  E-value=18  Score=12.60  Aligned_cols=29  Identities=14%  Similarity=0.168  Sum_probs=20.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus       219 ~g~pediA~~v~fL~S~~s~~i-tG~~i~V  247 (264)
T 3i4f_A          219 SGTGEDIARTISFLCEDDSDMI-TGTIIEV  247 (264)
T ss_dssp             CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCC-CCCEEEE
T ss_conf             8499999999999958610597-6878996


No 125
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii}
Probab=28.53  E-value=18  Score=12.60  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       214 ~~~pedvA~~v~fL~s~~s~~i-tG~~i~v  242 (249)
T 3f9i_A          214 YGIPEDVAYAVAFLASNNASYI-TGQTLHV  242 (249)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             9799999999999948312697-6866997


No 126
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=28.51  E-value=18  Score=12.60  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=19.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus       231 ~g~p~dvA~~v~fL~S~~s~~i-tG~~i~v  259 (267)
T 1iy8_A          231 YGEAPEIAAVVAFLLSDDASYV-NATVVPI  259 (267)
T ss_dssp             CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEC
T ss_conf             8099999999999957422496-7844775


No 127
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=28.44  E-value=18  Score=12.59  Aligned_cols=14  Identities=36%  Similarity=0.332  Sum_probs=5.2

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             98999988777655
Q gi|254780701|r  364 DEKGMRQVILNLLS  377 (495)
Q Consensus       364 D~~~L~qvl~NLi~  377 (495)
                      +|...-+.+..|++
T Consensus       232 ~p~~vA~~i~~l~~  245 (259)
T 1oaa_A          232 DCGTSAQKLLGLLQ  245 (259)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999842


No 128
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* 3jq7_A* 3jq8_A* ...
Probab=28.34  E-value=18  Score=12.57  Aligned_cols=21  Identities=14%  Similarity=0.389  Sum_probs=9.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|+|+.-.|.
T Consensus       252 ~~peevA~~v~fL~S~~s~~i  272 (288)
T 2x9g_A          252 ASAEQIADAVIFLVSGSAQYI  272 (288)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             699999999999958600594


No 129
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=28.26  E-value=18  Score=12.56  Aligned_cols=29  Identities=14%  Similarity=0.131  Sum_probs=15.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      +++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       235 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V  263 (273)
T 1ae1_A          235 AGKPQEVSALIAFLCFPAASYI-TGQIIWA  263 (273)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999957322697-6837984


No 130
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=28.19  E-value=18  Score=12.55  Aligned_cols=29  Identities=10%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .+.|.-+-.++.=|.|+.-.|. .|..|.|
T Consensus       221 ~g~peeiA~~v~fL~S~~a~~i-tG~~i~v  249 (256)
T 1geg_A          221 LSEPEDVAACVSYLASPDSDYM-TGQSLLI  249 (256)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8199999999999968432596-6876994


No 131
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southeast collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=28.12  E-value=15  Score=13.10  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus       210 ~~~pediA~~v~fL~S~~s~~i-tG~~i~v  238 (245)
T 2ph3_A          210 FGRPEEVAEAVAFLVSEKAGYI-TGQTLCV  238 (245)
T ss_dssp             CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8699999999999948301797-6887888


No 132
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=28.10  E-value=18  Score=12.54  Aligned_cols=29  Identities=7%  Similarity=0.204  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|.+-+|. .|..|.|
T Consensus       242 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V  270 (277)
T 2rhc_B          242 YVQPSEVAEMVAYLIGPGAAAV-TAQALNV  270 (277)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8099999999999957411587-6855888


No 133
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural genomics consortium, SGC; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=28.08  E-value=18  Score=12.54  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=16.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       211 ~~~p~diA~~v~fL~S~~a~~i-tG~~i~v  239 (246)
T 2ag5_A          211 FATAEEIAMLCVYLASDESAYV-TGNPVII  239 (246)
T ss_dssp             CEEHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCHHHCCC-CCCEEEE
T ss_conf             8199999999999947043797-6854888


No 134
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=27.90  E-value=18  Score=12.51  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       232 g~p~eva~~v~fL~S~~a~~i-tG~~i~v  259 (262)
T 1zem_A          232 GDINEIPGVVAFLLGDDSSFM-TGVNLPI  259 (262)
T ss_dssp             BCGGGSHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             199999999999957422596-6856882


No 135
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A
Probab=27.87  E-value=18  Score=12.51  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-+++.=|.|+.-.|. .|..|.|
T Consensus       204 ~g~p~evA~~v~fL~S~~a~~i-tG~~i~v  232 (239)
T 2ekp_A          204 WARPEEIARVAAVLCGDEAEYL-TGQAVAV  232 (239)
T ss_dssp             CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8499999999999957422697-6878898


No 136
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=27.79  E-value=18  Score=12.50  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-+++.=|.|+.-+|. .|..|.|
T Consensus       216 ~~~pedvA~~v~fL~S~~s~~i-tG~~i~v  244 (253)
T 1hxh_A          216 AYMPERIAQLVLFLASDESSVM-SGSELHA  244 (253)
T ss_dssp             EECHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8799999999999957243696-6837899


No 137
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=27.69  E-value=18  Score=12.49  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             0479899998877765568860679887999
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      -.++|.-+-.++.-|.|..-.|. .|..|.|
T Consensus       215 R~g~p~evA~~v~fL~S~~s~~i-tG~~i~V  244 (257)
T 1fjh_A          215 RRAEPSEMASVIAFLMSPAASYV-HGAQIVI  244 (257)
T ss_dssp             SCCCTHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             98099999999999958322795-7846897


No 138
>3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=27.60  E-value=18  Score=12.47  Aligned_cols=28  Identities=11%  Similarity=0.158  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             47989999887776556886067988799
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      .++|.-+-+++.=|+|..-.|. .|..|.
T Consensus       218 ~g~pedia~~v~fL~S~~a~~i-tG~~i~  245 (257)
T 3imf_A          218 LGTPEEIAGLAYYLCSDEAAYI-NGTCMT  245 (257)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf             8599999999999968322597-686588


No 139
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp}
Probab=27.58  E-value=18  Score=12.47  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=10.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.+..=|+|+.-+|.
T Consensus       213 ~~pedvA~~v~fL~S~~a~~i  233 (246)
T 3osu_A          213 GQDTDIANTVAFLASDKAKYI  233 (246)
T ss_dssp             BCHHHHHHHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             799999999999958311597


No 140
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=27.44  E-value=18  Score=12.45  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=21.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|+|++-.|. .|..|.|
T Consensus       235 ~~~pedvA~~v~fL~Sd~a~~i-tG~~i~v  263 (270)
T 3ftp_A          235 LGSPEDIAHAVAFLASPQAGYI-TGTTLHV  263 (270)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             9899999999999948111697-6875994


No 141
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase; oxidoreductase; 1.99A {Streptomyces coelicolor A3}
Probab=27.37  E-value=18  Score=12.44  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      +.|.-+-.++.=|+|++-.|.
T Consensus       218 g~pedvA~~v~fL~Sd~s~~i  238 (253)
T 2nm0_A          218 ARPEEIAATVRFLASDDASYI  238 (253)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             099999999999958311487


No 142
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=27.34  E-value=18  Score=12.44  Aligned_cols=29  Identities=17%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|+.-+|. .|..|.|
T Consensus       211 ~~~p~eiA~~v~fL~S~~a~~i-tG~~i~v  239 (247)
T 1uzm_A          211 VGTPAEVAGVVSFLASEDASYI-SGAVIPV  239 (247)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8399999999999958322597-6864887


No 143
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.26  E-value=18  Score=12.43  Aligned_cols=28  Identities=14%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             9999878997898785442265231577
Q gi|254780701|r  402 YISIKDNGPGIAEGEIPTVLTSFGQGSI  429 (495)
Q Consensus       402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~  429 (495)
                      +|-|.+=.+++.++++..+|.+|..+..
T Consensus        17 ~l~v~nLp~~~te~dL~~lF~~fG~I~~   44 (104)
T 1wex_A           17 VVHVRGLCESVVEADLVEALEKFGTICY   44 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             8999699999999999999998699737


No 144
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=27.23  E-value=18  Score=12.42  Aligned_cols=131  Identities=14%  Similarity=0.103  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf             1999999999999999973112210003676-1010-4798999988777655688606798879999999769859999
Q gi|254780701|r  327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS  404 (495)
Q Consensus       327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~-~~~v-~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~  404 (495)
                      ++-..++.+...+...-  +. ....  ... ...+ .-++..+|-++.|-+-.. .|+.. |.|.|.+.. -++  .|+
T Consensus       263 ~l~~~~~~~~~~i~~~~--~~-~~~~--~g~~r~e~~~yP~~AiREal~NAl~HR-DY~~~-~~i~i~I~~-~~d--rle  332 (583)
T 3lmm_A          263 SCLEQLDYLEQALNVVN--KN-NTVV--EGFVHKPVPEIPRLAVREAMLNAMIHR-DWNRS-EPIDVRWIE-LDS--TLI  332 (583)
T ss_dssp             CHHHHHHHHHHHHHHHS--CC-EEEE--ETTEEEEECSSCHHHHHHHHHHHHHHS-CSSSS-SCEEEEEET-TTT--EEE
T ss_pred             CHHHHHHHHHHHHHHHC--CC-CEEC--CCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCC-CCCEEEEEE-ECC--EEE
T ss_conf             79999999999999856--56-3322--686265358895899999999999842-11015-991389999-789--899


Q ss_pred             EEECC---CCCCHHHHH--------HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE-EEEEECCCCEEEEEEE
Q ss_conf             98789---978987854--------42265231577767899988805899999999619859-9997989952988984
Q gi|254780701|r  405 IKDNG---PGIAEGEIP--------TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF-LIRSKLREGVEVIAIL  472 (495)
Q Consensus       405 V~DtG---~GI~~e~~~--------~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i-~v~S~~G~Gt~f~v~L  472 (495)
                      |..-|   +||.++.+.        .|-+-|++.+-     .+..|-|..-..+..+..|..- ..++..+  ..+.++|
T Consensus       333 i~nPG~l~~git~e~l~~~~~~RNp~La~~~~~l~~-----iE~~G~Gi~ri~~~~~~~g~~~P~~~~~~~--~~v~v~l  405 (583)
T 3lmm_A          333 VRSPGGFPAAITSENVLSNRAARYPALADLYRALGL-----VDKQGVGVDRMYQAMIALGHRPPTIEEIAG--PFVETTL  405 (583)
T ss_dssp             EEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHTTC-----SCSSHHHHHHHHHHHHHTTCCCCEEEEETT--TEEEEEE
T ss_pred             EECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCC-----HHCCCCHHHHHHHHHHHCCCCCCCEEECCC--CEEEEEE
T ss_conf             967987878758887258988877899999997180-----431395599999999975999991795589--8799998


Q ss_pred             CH
Q ss_conf             72
Q gi|254780701|r  473 PN  474 (495)
Q Consensus       473 P~  474 (495)
                      |.
T Consensus       406 ~~  407 (583)
T 3lmm_A          406 VG  407 (583)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             17


No 145
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=27.13  E-value=18  Score=12.41  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=9.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.-|+|+.-.|.
T Consensus       248 ~~pedvA~~v~fL~S~~a~~i  268 (279)
T 1xg5_A          248 LKPEDVAEAVIYVLSTPAHIQ  268 (279)
T ss_dssp             BCHHHHHHHHHHHHHSCTTEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCE
T ss_conf             299999999999968745481


No 146
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=26.83  E-value=19  Score=12.37  Aligned_cols=17  Identities=18%  Similarity=0.251  Sum_probs=9.1

Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             47989999887776556
Q gi|254780701|r  362 WADEKGMRQVILNLLSN  378 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~N  378 (495)
                      .++|.-+-+++.-|+|+
T Consensus       199 ~g~pedvA~~v~fL~s~  215 (247)
T 3dii_A          199 VGTPKDISNMVLFLCQQ  215 (247)
T ss_dssp             CBCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHC
T ss_conf             83999999999999808


No 147
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=26.65  E-value=19  Score=12.35  Aligned_cols=53  Identities=25%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH
Q ss_conf             047989999887776556886067988799999997698599999878997898785
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI  417 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~  417 (495)
                      +.|||.|-+++- +++.|.-..+...+-.......  +| ..|.|.-+|+|.|....
T Consensus        19 ~~Gdp~Ra~~ia-~~ld~~~~~~~~r~~~~ytG~~--~g-~~i~v~~~GiG~~~aa~   71 (236)
T 1je0_A           19 VVGDPGRARLLS-TLLQNPKLTNENRGFLVYTGKY--NG-ETVSIATHGIGGPSIAI   71 (236)
T ss_dssp             EESCHHHHHHHG-GGSEEEEEEECGGGCCEEEEEE--TT-EEEEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHH-HHCCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHH
T ss_conf             579979999999-9738877964148817999999--98-88999967848899999


No 148
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.92  E-value=19  Score=12.25  Aligned_cols=68  Identities=10%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCE-EEEEEECCCCEEEEEEECH
Q ss_conf             999987899789878544226523157776789998880----589999999961985-9999798995298898472
Q gi|254780701|r  402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL----GLPIAQSIMANHGGQ-FLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL----GLaIvk~lve~hgG~-i~v~S~~G~Gt~f~v~LP~  474 (495)
                      .+-|..=..++.++++..+|++|..+....-....|.++    -..-+++.++.+.|. +.+     .|-...|.+-.
T Consensus        17 ~l~v~nLp~~~te~~L~~~f~~~G~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~-----~g~~i~v~~s~   89 (101)
T 2cq1_A           17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHL-----RNQPIYIQYSN   89 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEE-----TTEECEEEECS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCEE-----CCEEEEEEECC
T ss_conf             99994999999999999998754975256875269889999899999999999975998859-----99688999789


No 149
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=25.88  E-value=18  Score=12.55  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             798999988777655688606798879
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRV  389 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V  389 (495)
                      ++|.-+-.++.=|.|..-.|. .|..|
T Consensus       219 g~pedvA~~v~fL~S~~s~~i-TG~~i  244 (255)
T 1fmc_A          219 GQPQDIANAALFLCSPAASWV-SGQIL  244 (255)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTC-CSCEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEE
T ss_conf             399999999999958422597-68779


No 150
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=25.88  E-value=19  Score=12.24  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|..-+|. .|..|.|
T Consensus       219 ~~~pediA~~v~fL~S~~a~~i-TG~~i~V  247 (256)
T 3gaf_A          219 LGEAQDIANAALFLCSPAAAWI-SGQVLTV  247 (256)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999958322697-6876998


No 151
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=25.69  E-value=18  Score=12.50  Aligned_cols=28  Identities=7%  Similarity=0.109  Sum_probs=15.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .+|..+...+..|++..-+|. .|+.|.|
T Consensus       200 ~~pe~va~~i~~l~s~~~~~v-tG~~i~v  227 (241)
T 1dhr_A          200 TPLEFLVETFHDWITGNKRPN-SGSLIQV  227 (241)
T ss_dssp             EEHHHHHHHHHHHHTTTTCCC-TTCEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCC-CCCEEEE
T ss_conf             999999999999958886678-7776999


No 152
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A
Probab=25.67  E-value=19  Score=12.21  Aligned_cols=29  Identities=14%  Similarity=0.242  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|..-+|. .|..|.|
T Consensus       231 ~~~pediA~~v~fL~Sd~s~~i-TG~~i~V  259 (266)
T 3grp_A          231 MGIGEEIAFATVYLASDEAAYL-TGQTLHI  259 (266)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             9699999999999957122597-6865997


No 153
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=25.51  E-value=20  Score=12.19  Aligned_cols=20  Identities=15%  Similarity=0.087  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEC
Q ss_conf             99999999997311221000
Q gi|254780701|r  334 ECIIMLQLRAQEKNIEIFQK  353 (495)
Q Consensus       334 ~~~~~~~~~A~~~~~~l~~~  353 (495)
                      ...+.+...-..+|+++..-
T Consensus       173 ~lt~~LA~E~~~~gIrVN~I  192 (319)
T 1gz6_A          173 GLANTLVIEGRKNNIHCNTI  192 (319)
T ss_dssp             HHHHHHHHHTGGGTEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEE
T ss_conf             72999999967369799998


No 154
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii RH} PDB: 2o50_A 3nj8_A*
Probab=25.39  E-value=20  Score=12.17  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=14.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             7989999887776556886067988799
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      ++|.-+-.++.=|+|+.-.|. .|..|.
T Consensus       261 g~pedvA~~v~fL~Sd~s~~i-TG~~i~  287 (315)
T 2o2s_A          261 LHSDDVGGAALFLLSPLARAV-SGVTLY  287 (315)
T ss_dssp             CCHHHHHHHHHHHTSGGGTTC-CSCEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEE
T ss_conf             799999999999957143795-685788


No 155
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=24.97  E-value=20  Score=12.11  Aligned_cols=21  Identities=14%  Similarity=0.074  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      +.|.-+-+.+.=|.|..-+|.
T Consensus       215 g~pedvA~~v~fL~S~~s~~i  235 (249)
T 2ew8_A          215 QVPLDLTGAAAFLASDDASFI  235 (249)
T ss_dssp             CCTHHHHHHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             899999999999958232697


No 156
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.90  E-value=20  Score=12.11  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=26.7

Q ss_pred             EEEEEEECCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999878997-89878544226523157776789998880
Q gi|254780701|r  401 QYISIKDNGPG-IAEGEIPTVLTSFGQGSIAIKSAEQGVGL  440 (495)
Q Consensus       401 ~~i~V~DtG~G-I~~e~~~~iF~~F~r~~~~~~~~~~GtGL  440 (495)
                      .+|-|.+=-.+ ..++++..+|++|..+.+-.--...|.++
T Consensus        16 r~l~V~nl~~~~~t~~eL~~lF~~fG~I~~v~~~~~k~~af   56 (102)
T 1x4d_A           16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAF   56 (102)
T ss_dssp             CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEE
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCEEEE
T ss_conf             78999899987678999999986657668999834650899


No 157
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=24.65  E-value=20  Score=12.07  Aligned_cols=29  Identities=7%  Similarity=0.189  Sum_probs=17.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|+.-+|. .|..|.|
T Consensus       215 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V  243 (250)
T 2cfc_A          215 IGTAAQVADAVMFLAGEDATYV-NGAALVM  243 (250)
T ss_dssp             CBCHHHHHHHHHHHHSTTCTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             9499999999999958043695-6834666


No 158
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=24.47  E-value=20  Score=12.04  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-+++.=|+|..-+|. .|..|.|
T Consensus       213 ~~~p~diA~~v~fL~S~~s~~i-tG~~i~V  241 (256)
T 2d1y_A          213 LGKPEEVAEAVLFLASEKASFI-TGAILPV  241 (256)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8399999999999968422496-6877883


No 159
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=24.30  E-value=20  Score=12.14  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=14.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             4798999988777655688606798879
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRV  389 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V  389 (495)
                      .++|.-+-.++.-|+|+.-+|. .|..|
T Consensus       234 ~g~pedvA~~v~fL~S~~a~~i-TG~~i  260 (269)
T 3gk3_A          234 LGRPDEVAALIAFLCSDDAGFV-TGADL  260 (269)
T ss_dssp             CBCHHHHHHHHHHHTSTTCTTC-CSCEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEE
T ss_conf             9899999999999948122697-68648


No 160
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=24.23  E-value=21  Score=12.01  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             0479899998877765568860679887999
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      -.++|.-+-.++.-|.|++-+|. .|..|.|
T Consensus       219 R~~~peevA~~v~fL~S~~a~~i-TG~~i~v  248 (255)
T 2q2v_A          219 AFVTPEHLGELVLFLCSEAGSQV-RGAAWNV  248 (255)
T ss_dssp             CCBCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             98399999999999948132697-6866998


No 161
>1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=24.21  E-value=21  Score=12.01  Aligned_cols=29  Identities=17%  Similarity=0.328  Sum_probs=17.0

Q ss_pred             CCCHHHHHHHHHHHHH-HHHHCCCCCCEEEE
Q ss_conf             4798999988777655-68860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLS-NAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~-NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-+++.-|.| ++-.|. .|..|.|
T Consensus       247 ~g~pediA~~v~fL~S~d~s~~i-TGq~i~V  276 (297)
T 1xhl_A          247 CGKPEEIANIIVFLADRNLSSYI-IGQSIVA  276 (297)
T ss_dssp             CBCHHHHHHHHHHHHCHHHHTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCHHCCC-CCCEEEE
T ss_conf             80999999999998099520684-0876886


No 162
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=23.97  E-value=21  Score=11.97  Aligned_cols=28  Identities=14%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.-|.|++-+|. .|..|.|
T Consensus       282 ~~pedvA~~v~fL~Sd~a~~i-TG~~i~V  309 (317)
T 3oec_A          282 VEPEDVSNAVAWLASDEARYI-HGAAIPV  309 (317)
T ss_dssp             BCHHHHHHHHHHHTSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCHHHCCC-CCCEEEE
T ss_conf             899999999999957043696-6876888


No 163
>3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A
Probab=23.88  E-value=21  Score=11.96  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-..+.=|+|+.-+|.
T Consensus       225 ~~peeiA~~v~fL~s~~s~~i  245 (260)
T 3gr6_A          225 VDQVEVGKTAAYLLSDLSSGV  245 (260)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             799999999999958322794


No 164
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=23.68  E-value=21  Score=11.93  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|+.-.|. .|..|.|
T Consensus       213 ~~~pedvA~~v~fL~S~~a~~i-tG~~i~v  241 (247)
T 2hq1_A          213 FGTPEEVANVVGFLASDDSNYI-TGQVINI  241 (247)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8699999999999958311697-6886996


No 165
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=23.62  E-value=21  Score=11.92  Aligned_cols=21  Identities=10%  Similarity=0.052  Sum_probs=8.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|+|.+-.|.
T Consensus       223 ~~pedvA~~v~fL~S~~s~~i  243 (261)
T 3n74_A          223 LKPDDLAEAAAFLCSPQASMI  243 (261)
T ss_dssp             CCHHHHHHHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             199999999999958412697


No 166
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=23.61  E-value=0.18  Score=29.75  Aligned_cols=65  Identities=14%  Similarity=0.025  Sum_probs=35.4

Q ss_pred             EEEEECCCCCCH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf             999878997898-78544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r  403 ISIKDNGPGIAE-GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP  473 (495)
Q Consensus       403 i~V~DtG~GI~~-e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP  473 (495)
                      ..++|+|.||+. +.....|+.|...+.......+|.|++..     ...|.| +.+++.+|.+..+++.++
T Consensus        29 ~~L~~~G~~v~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~   94 (254)
T 2ayx_A           29 TSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTF-----CRRHIG-IPLEKAPGEWVHSVAAPH   94 (254)
T ss_dssp             HHHTTTTEEEEECSSCCCCTTCEEEEESSCSCCCCSSEEEEE-----CSSCCC-SCCTTSTTEEEECSSCCS
T ss_pred             HHHHHCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHH-----HHHHCC-CCHHHCCCCEECCEEEHH
T ss_conf             999977998983444677889779855876655461069999-----988468-512212464020221143


No 167
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* 1nhw_A* 1nhg_A* 1nnu_A* ...
Probab=23.53  E-value=21  Score=11.91  Aligned_cols=28  Identities=21%  Similarity=0.153  Sum_probs=16.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus       291 ~~pedvA~~v~fL~Sd~s~~i-TG~~i~V  318 (329)
T 3lt0_A          291 LLSTDIGSVASFLLSRESRAI-TGQTIYV  318 (329)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             699999999999848053791-6875898


No 168
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=23.48  E-value=21  Score=11.90  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|..-+|. .|..|.|
T Consensus       214 ~~~pediA~~v~fL~S~~a~~i-tGq~i~v  242 (264)
T 2dtx_A          214 IGKPQEVASAVAFLASREASFI-TGTCLYV  242 (264)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999958432591-6863798


No 169
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.47  E-value=21  Score=11.90  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=17.8

Q ss_pred             CCCHHHHHHHHHHHHHH-HHHCCCCCCEEEE
Q ss_conf             47989999887776556-8860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSN-AVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~N-AiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.-|.|+ +-.|. .|..|.|
T Consensus       229 ~g~pedvA~~v~fL~S~~~a~~i-tG~~i~V  258 (278)
T 1spx_A          229 MGQPQDIAEVIAFLADRKTSSYI-IGHQLVV  258 (278)
T ss_dssp             CBCHHHHHHHHHHHHCHHHHTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCE-ECCEEEE
T ss_conf             86999999999999198401882-3817886


No 170
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis}
Probab=23.33  E-value=21  Score=11.88  Aligned_cols=29  Identities=21%  Similarity=0.140  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|+|++-+|. .|..|.|
T Consensus       243 ~g~peevA~~v~fL~Sd~a~~i-TG~~i~V  271 (293)
T 3grk_A          243 TVTIDEVGDVGLYFLSDLSRSV-TGEVHHA  271 (293)
T ss_dssp             CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8299999999999957243590-6765887


No 171
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=23.16  E-value=21  Score=11.85  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             9899998877765568860679887999
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      +|.-+-.++.-|+|+.-+|. .|..|.|
T Consensus       212 ~PedvA~~v~fL~S~~a~~i-tG~~i~V  238 (254)
T 1hdc_A          212 EPGEIAGAVVKLLSDTSSYV-TGAELAV  238 (254)
T ss_dssp             CHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             99999999999957222697-7876887


No 172
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short- chain oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=23.04  E-value=22  Score=11.84  Aligned_cols=29  Identities=21%  Similarity=0.137  Sum_probs=19.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-+++.=|.|++-+|. .|..|.|
T Consensus       214 ~g~pedvA~~v~fL~S~~a~~i-tG~~i~V  242 (250)
T 2fwm_X          214 IARPQEIANTILFLASDLASHI-TLQDIVV  242 (250)
T ss_dssp             --CHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCEEEEE
T ss_conf             8399999999999968323596-1557888


No 173
>3i1j_A Oxidoreductase, short chain dehydrogenase/reductase family; dimer, mixed alpha-beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV}
Probab=22.99  E-value=22  Score=11.83  Aligned_cols=10  Identities=20%  Similarity=0.355  Sum_probs=3.7

Q ss_pred             CCHHHHHHHH
Q ss_conf             7989999887
Q gi|254780701|r  363 ADEKGMRQVI  372 (495)
Q Consensus       363 ~D~~~L~qvl  372 (495)
                      .|+...++++
T Consensus       114 ~~~~~~~~~~  123 (247)
T 3i1j_A          114 LPDEDFMQVM  123 (247)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
T ss_conf             9999999999


No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.91  E-value=15  Score=13.14  Aligned_cols=66  Identities=11%  Similarity=0.202  Sum_probs=37.0

Q ss_pred             EEEEE--CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99987--8997898785442265231577767899988805----899999999619859999798995298898
Q gi|254780701|r  403 ISIKD--NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG----LPIAQSIMANHGGQFLIRSKLREGVEVIAI  471 (495)
Q Consensus       403 i~V~D--tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG----LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~  471 (495)
                      +-|..  =..+|.++++..+|++|..+..-.--..+|.+.=    -.-+++-++.|+|..-.   ++.|-...+.
T Consensus        28 l~V~nggL~~~~te~~L~~~F~~~G~i~~v~~~~~k~~aFV~f~~~~~A~~A~~~lng~~i~---~~~~~~~~l~   99 (114)
T 2cq2_A           28 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV---DDLGQKITLY   99 (114)
T ss_dssp             EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEE---CTTSCEEECE
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCC---CCCCCEEEEE
T ss_conf             99993898999889999999985299279999568988999988999999999983898957---8899567899


No 175
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A*
Probab=22.88  E-value=22  Score=11.81  Aligned_cols=29  Identities=31%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             479899998877765568860679887999
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus       242 ~g~pedvA~~v~fL~Sd~s~~i-TG~~i~V  270 (296)
T 3k31_A          242 NTTLDDVGGAALYLLSDLGRGT-TGETVHV  270 (296)
T ss_dssp             CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             8699999999999957043692-5885788


No 176
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=22.78  E-value=22  Score=11.80  Aligned_cols=26  Identities=12%  Similarity=0.143  Sum_probs=11.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             798999988777655688606798879
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRV  389 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V  389 (495)
                      +.|.-+-.++.=|+|..-+|. .|..|
T Consensus       215 ~~pedvA~~v~fL~S~~a~~i-tG~~i  240 (252)
T 3f1l_A          215 KTPADIMPLYLWLMGDDSRRK-TGMTF  240 (252)
T ss_dssp             BCTGGGHHHHHHHHSGGGTTC-CSCEE
T ss_pred             CCHHHHHHHHHHHHCHHHCCC-CCCEE
T ss_conf             999999999999948132587-78789


No 177
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=22.46  E-value=22  Score=11.75  Aligned_cols=104  Identities=17%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHH-HCCCCC-------CEEEEEEEEECCCEE-EEEEEECCCCCCHHHHHHHCCCCCCC----
Q ss_conf             04798999988777655688-606798-------879999999769859-99998789978987854422652315----
Q gi|254780701|r  361 VWADEKGMRQVILNLLSNAV-KFTAIG-------GRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQG----  427 (495)
Q Consensus       361 v~~D~~~L~qvl~NLi~NAi-K~T~~g-------G~V~v~~~~~~~~~~-~i~V~DtG~GI~~e~~~~iF~~F~r~----  427 (495)
                      ...||..|+|++. |+.+|= |-||.+       -...+.+-..++..+ .+.|.+.| |++++-.+.|..-..|.    
T Consensus       359 l~~~~~~L~~~f~-LLv~AHYrtsP~DL~~LlDaP~~~~~~~~~~~~vvg~~~v~~EG-~l~~~l~~~i~~G~rRp~G~L  436 (671)
T 2zpa_A          359 WQSDPETPLKVYQ-LLSGAHYRTSPLDLRRMMDAPGQHFLQAAGENEIAGALWLVDEG-GLSQQLSQAVWAGFRRPRGNL  436 (671)
T ss_dssp             HHHCTHHHHHHHH-HHHHHSSSBCHHHHHHHHHCTTEEEEEEECSSSEEEEEEEEEEE-CCCHHHHHHHHHTSCCCSSCH
T ss_pred             HHCCHHHHHHHHH-HHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECC-CCCHHHHHHHHHCCCCCCCCC
T ss_conf             4239999999999-99988616985789985368665476532798449999997358-999999999984788899887


Q ss_pred             -----------------CC------CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             -----------------77------7678999888058999999996198599997989952988984
Q gi|254780701|r  428 -----------------SI------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL  472 (495)
Q Consensus       428 -----------------~~------~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~L  472 (495)
                                       ..      +..-...+-|+|-...+.+.+...| +..     -||.|-.+-
T Consensus       437 ipq~La~h~~~~~a~~l~~~RIvRIAvhP~~q~~GiGs~lL~~~~~~a~~-~D~-----lg~SFG~t~  498 (671)
T 2zpa_A          437 VAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTQD-LDY-----LSVSFGYTG  498 (671)
T ss_dssp             HHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHHHHHTCCS-CSE-----EEEEEECCH
T ss_pred             HHHHHHHHHCCHHHHHHCCEEEEEEEECHHHHCCCHHHHHHHHHHHHHCC-CCE-----EEECCCCCH
T ss_conf             69999997386766644111478888477555368799999999987358-887-----974537977


No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.07  E-value=19  Score=12.39  Aligned_cols=65  Identities=12%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf             999987899789878544226523157776789998880----5899999999619859999798995298898472
Q gi|254780701|r  402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL----GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN  474 (495)
Q Consensus       402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL----GLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~  474 (495)
                      .|-|.  |..+.++++..+|++|..+..-......|.|.    -..-+++-++.++|..-      .|....|.+-.
T Consensus        17 ~i~V~--~l~~te~~L~~~F~~fG~I~~v~~~~~~g~afV~f~~~~~A~~Ai~~~n~~~~------~g~~i~v~~a~   85 (97)
T 1x5p_A           17 TLYVY--GEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV------ESVQLKVNIAR   85 (97)
T ss_dssp             EEEEE--CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE------TTEEEEEECCS
T ss_pred             EEEEE--CCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCEE------CCEEEEEEECC
T ss_conf             99995--88699999999997279778800226899799998978999999998499989------99898999737


No 179
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, protein structure initiative; 2.90A {Pyrococcus furiosus}
Probab=21.94  E-value=23  Score=11.67  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999850336878937899999999999999
Q gi|254780701|r  265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH  300 (495)
Q Consensus       265 ~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~  300 (495)
                      .+|.||+|-+....-...+++...+.++.|...-..
T Consensus        50 vsIlGFlEGiLttLK~Ky~deri~~Lle~Vr~~R~e   85 (103)
T 2hjm_A           50 ASIYGFLEGILTTLKMKYSNEKIETLLNEVKTAREE   85 (103)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             889999999999999857837799999999999999


No 180
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=21.83  E-value=18  Score=12.50  Aligned_cols=20  Identities=5%  Similarity=-0.090  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHCCCE-EEEEEE
Q ss_conf             89999999961985-999979
Q gi|254780701|r  442 LPIAQSIMANHGGQ-FLIRSK  461 (495)
Q Consensus       442 LaIvk~lve~hgG~-i~v~S~  461 (495)
                      ..++|.++...+.. |.|-+.
T Consensus       169 ~~ltk~lA~el~~~gIrVN~V  189 (262)
T 3ksu_A          169 EHYTRAASKELMKQQISVNAI  189 (262)
T ss_dssp             HHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEE
T ss_conf             999999999967159199999


No 181
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomics; HET: ADN; 1.40A {Thermus thermophilus HB8} SCOP: c.2.1.2
Probab=21.76  E-value=23  Score=11.64  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=14.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             47989999887776556886067988799
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVH  390 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~  390 (495)
                      .++|.-+-.++.-|.|+  .|. .|..|.
T Consensus       207 ~g~pedvA~~v~fL~s~--~~i-tG~~i~  232 (242)
T 1uay_A          207 LGRPEEYAALVLHILEN--PML-NGEVVR  232 (242)
T ss_dssp             CCCHHHHHHHHHHHHHC--TTC-CSCEEE
T ss_pred             CCCHHHHHHHHHHHHHC--CCC-CCCEEE
T ss_conf             83999999999999818--999-999887


No 182
>3ojf_A Enoyl-[acyl-carrier-protein] reductase (FABL) (Na; enoyl-ACP reductase, tetramer, rossmann fold, NAD(P) binding oxidoreductase; HET: IMJ NDP; 2.20A {Bacillus cereus} PDB: 2qio_A* 3oje_A
Probab=21.73  E-value=23  Score=11.64  Aligned_cols=21  Identities=10%  Similarity=0.143  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             798999988777655688606
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T  383 (495)
                      ++|.-+-.++.=|+|..-+|.
T Consensus       221 g~pedvA~~v~fL~S~~s~~i  241 (257)
T 3ojf_A          221 TTQEEVGDTAVFLFSDLARGV  241 (257)
T ss_dssp             CCHHHHHHHHHHHHSGGGTTC
T ss_pred             CCHHHHHHHHHHHHCCHHCCC
T ss_conf             499999999999957243693


No 183
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 2jjy_A*
Probab=21.58  E-value=23  Score=11.62  Aligned_cols=28  Identities=25%  Similarity=0.199  Sum_probs=13.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             79899998877765568860679887999
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      ++|.-+-.++.=|.|+.-+|. .|..|.|
T Consensus       240 ~~pedvA~~v~fL~S~~s~~i-tG~~i~V  267 (280)
T 3nrc_A          240 VDIMEVGNTVAFLCSDMATGI-TGEVVHV  267 (280)
T ss_dssp             CCHHHHHHHHHHTTSGGGTTC-CSCEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             599999999999958322694-6845787


No 184
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.53  E-value=23  Score=11.61  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=25.0

Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             99998789978987854422652315777678999888
Q gi|254780701|r  402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG  439 (495)
Q Consensus       402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtG  439 (495)
                      +|-|..=...+.++++..+|.+|..+..-.-....|.|
T Consensus        33 ~l~v~nLp~~~te~~L~~~F~~fG~v~~v~~~~~k~~a   70 (119)
T 2ad9_A           33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQA   70 (119)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             99996999999999999999876975521422358779


No 185
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=21.53  E-value=23  Score=11.61  Aligned_cols=44  Identities=18%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH
Q ss_conf             47989999887776556886067988799999997698599999878997898
Q gi|254780701|r  362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE  414 (495)
Q Consensus       362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~  414 (495)
                      .++|.-+-.++.=|.|..-.|. .|..|.|     ++|.   ++...-||.|+
T Consensus       211 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V-----dGG~---~~~~~~p~~p~  254 (254)
T 1zmt_A          211 LGTQKELGELVAFLASGSCDYL-TGQVFWL-----AGGF---PMIERWPGMPE  254 (254)
T ss_dssp             CBCHHHHHHHHHHHHTTSCGGG-TTCEEEE-----STTC---CCCCCCTTCC-
T ss_pred             CCCHHHHHHHHHHHHCCCCCCC-CCCEEEE-----CCCC---EECCCCCCCCC
T ss_conf             8499999999999968601586-6864897-----9790---74999985688


No 186
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reductase; structural genomics, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=21.26  E-value=23  Score=11.57  Aligned_cols=49  Identities=12%  Similarity=-0.010  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCC---CCHHCCCCHHHHHHHHH-HHH
Q ss_conf             99999999999999997311221000367---61010479899998877-765
Q gi|254780701|r  328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP---SLSSVWADEKGMRQVIL-NLL  376 (495)
Q Consensus       328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~---~~~~v~~D~~~L~qvl~-NLi  376 (495)
                      +..+++.+.+.+........+.+.+....   ..+.-..|+....+++. ||.
T Consensus        72 v~~~~~~~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~vNl~  124 (255)
T 3icc_A           72 VEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK  124 (255)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf             99999999999865326898638998999999998134999999999998719


No 187
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2
Probab=21.03  E-value=23  Score=11.53  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=12.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             9899998877765568860679887999
Q gi|254780701|r  364 DEKGMRQVILNLLSNAVKFTAIGGRVHV  391 (495)
Q Consensus       364 D~~~L~qvl~NLi~NAiK~T~~gG~V~v  391 (495)
                      .|.-+-.++.=|.|++-.|. .|..|.|
T Consensus       234 ~pediA~~v~fL~S~~a~~i-tG~~i~v  260 (267)
T 1vl8_A          234 VPEDLKGVAVFLASEEAKYV-TGQIIFV  260 (267)
T ss_dssp             CGGGGHHHHHHHHSGGGTTC-CSCEEEE
T ss_pred             CHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf             99999999999957422696-6876987


No 188
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier- protein) reductase, oxidoreductase; 2.60A {Eimeria tenella str}
Probab=21.02  E-value=23  Score=11.53  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEECCC---C--CCHHCCCCHHHHHHHHH-------HHHHHHHHCCCCCCEEEEEEE
Q ss_conf             19999999999999999731122100036---7--61010479899998877-------765568860679887999999
Q gi|254780701|r  327 SLIDIVRECIIMLQLRAQEKNIEIFQKID---P--SLSSVWADEKGMRQVIL-------NLLSNAVKFTAIGGRVHVTVG  394 (495)
Q Consensus       327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~---~--~~~~v~~D~~~L~qvl~-------NLi~NAiK~T~~gG~V~v~~~  394 (495)
                      ....+++.+.+.|      .++.+.+...   +  ..|....++....+++.       ++..-++++..++|.+.+   
T Consensus       119 ~~~~~~~~~~~~~------G~iDiLVnnag~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~m~~~g~~i~---  189 (319)
T 2ptg_A          119 TISEVAEAVRADV------GQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALA---  189 (319)
T ss_dssp             SHHHHHHHHHHHH------SCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE---
T ss_pred             HHHHHHHHHHHHH------CCCCEEEECCCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE---
T ss_conf             9999999999983------9987899778747778999266999999999987266999999987354213674699---


Q ss_pred             EECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             9769859999987899789878544226523157776789998880589999999961985999979
Q gi|254780701|r  395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK  461 (495)
Q Consensus       395 ~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~  461 (495)
                              +...-...+.++..      ..|-     ..+....+|--.+++.+.+.+|-++..-+-
T Consensus       190 --------i~~~s~~~~~~~~~------~~y~-----~sKaa~~~l~~~la~e~~~~~~irvn~i~P  237 (319)
T 2ptg_A          190 --------LSYIASEKVIPGYG------GGMS-----SAKAALESDCRTLAFEAGRARAVRVNCISA  237 (319)
T ss_dssp             --------EEECC-----------------------------THHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             --------EEEEHHHCCCCCCC------CHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             --------99713301778742------0357-----888999999999999997650875102577


No 189
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=20.60  E-value=19  Score=12.35  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             9999878997898785442265231577767899988805----8999999996198599997989952988984724
Q gi|254780701|r  402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG----LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG----LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
                      ++-|++=.+.+.++++..+|++|..+..-.-...+|.|.=    -.-+.+-++.++|..-      .|.+..+.++..
T Consensus         9 ~l~v~NL~~~vt~~~L~~lf~~~G~i~~~~~~~~~g~afV~f~~~~~A~~A~~~lng~~l------~~~~i~v~~a~~   80 (89)
T 2wbr_A            9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL------ANTTIFAESPSE   80 (89)
T ss_dssp             EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEE------TTEEEEEECCCH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEE------CCEEEEEEECCH
T ss_conf             899979999899999999999859956442289997899998999999999998688997------994899997898


No 190
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.48  E-value=20  Score=12.11  Aligned_cols=39  Identities=10%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             EEEEEECCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999987899-789878544226523157776789998880
Q gi|254780701|r  402 YISIKDNGP-GIAEGEIPTVLTSFGQGSIAIKSAEQGVGL  440 (495)
Q Consensus       402 ~i~V~DtG~-GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL  440 (495)
                      .|-|..==. ++.++++..+|++|.++.+..-....|.|+
T Consensus        27 ~l~V~nLP~~~~te~~l~~~F~~fG~v~~~~~~~~k~~af   66 (112)
T 1x4f_A           27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAF   66 (112)
T ss_dssp             EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE
T ss_conf             8998499977679999999999739862688860477799


Done!