Query gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 495 No_of_seqs 175 out of 21465 Neff 7.9 Searched_HMMs 23785 Date Tue May 31 19:51:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780701.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2c2a_A Sensor histidine kinase 100.0 0 0 449.2 28.0 236 241-478 12-251 (258) 2 3d36_A Sporulation kinase B; G 100.0 6.7E-43 0 384.8 19.7 213 249-476 14-226 (244) 3 3a0r_A Sensor protein; four he 100.0 4E-42 0 378.2 19.2 217 246-476 129-346 (349) 4 3jz3_A Sensor protein QSEC; he 100.0 6.9E-43 0 384.7 9.5 213 251-474 4-216 (222) 5 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.4E-32 6E-37 296.3 22.3 225 246-474 118-372 (388) 6 2e0a_A Pyruvate dehydrogenase 100.0 9.2E-32 3.9E-36 289.3 24.9 243 246-489 93-366 (394) 7 2btz_A Pyruvate dehydrogenase 100.0 6.2E-31 2.6E-35 282.2 21.4 224 250-474 97-349 (394) 8 2q8g_A [pyruvate dehydrogenase 100.0 7E-30 2.9E-34 273.2 25.1 242 245-487 102-377 (407) 9 1y8o_A [pyruvate dehydrogenase 100.0 1.2E-29 5.1E-34 271.2 21.0 229 245-474 114-373 (419) 10 1ysr_A Sensor-type histidine k 100.0 9.2E-30 3.9E-34 272.2 14.3 147 321-475 3-149 (150) 11 3a0y_A Sensor protein; ATP-LID 100.0 3.5E-29 1.5E-33 267.3 16.7 147 321-475 1-148 (152) 12 1id0_A PHOQ histidine kinase; 100.0 4.6E-29 1.9E-33 266.2 16.2 145 324-476 2-146 (152) 13 1bxd_A ENVZ(290-450), protein 100.0 3.6E-29 1.5E-33 267.1 14.4 149 317-475 2-150 (161) 14 1r62_A Nitrogen regulation pro 99.9 1.9E-27 7.9E-32 252.4 11.1 150 319-476 1-160 (160) 15 1b3q_A Protein (chemotaxis pro 99.9 9.2E-26 3.9E-30 237.9 16.4 204 248-476 9-249 (379) 16 3ehh_A Sensor kinase (YOCF pro 99.8 3.7E-17 1.5E-21 164.2 20.7 188 249-475 28-216 (218) 17 1ixm_A SPO0B, protein (sporula 99.7 1.5E-18 6.2E-23 176.1 2.9 154 245-427 17-172 (192) 18 2zbk_B Type 2 DNA topoisomeras 99.7 2.2E-15 9.1E-20 149.0 13.9 112 364-475 28-146 (530) 19 1mu5_A Type II DNA topoisomera 99.6 4.7E-15 2E-19 146.1 12.6 109 364-472 29-145 (471) 20 1i58_A Chemotaxis protein CHEA 99.5 6E-15 2.5E-19 145.2 5.9 72 403-475 118-189 (189) 21 1th8_A Anti-sigma F factor; SP 99.5 8.9E-13 3.7E-17 126.6 12.1 96 366-472 38-136 (145) 22 3ehg_A Sensor kinase (YOCF pro 99.4 7.9E-12 3.3E-16 118.5 13.8 124 326-475 2-126 (128) 23 1joy_A Protein (ENVZ_ecoli); h 98.8 4.4E-09 1.8E-13 94.9 4.7 59 246-313 9-67 (67) 24 3ke6_A Protein RV1364C/MT1410; 98.7 5E-08 2.1E-12 85.9 8.3 95 365-481 295-392 (399) 25 2q2e_B Type 2 DNA topoisomeras 98.3 2E-05 8.4E-10 63.6 12.4 113 363-475 33-152 (621) 26 3n0r_A Response regulator; sig 98.0 5.8E-08 2.4E-12 85.3 -6.0 112 340-473 13-129 (286) 27 3h4l_A DNA mismatch repair pro 97.7 0.00038 1.6E-08 52.6 9.6 87 367-462 25-117 (367) 28 3na3_A DNA mismatch repair pro 97.5 0.00081 3.4E-08 49.8 9.4 97 367-472 28-131 (348) 29 1h7s_A PMS1 protein homolog 2; 97.4 0.001 4.3E-08 48.9 9.4 87 367-462 34-126 (365) 30 1b63_A MUTL; DNA mismatch repa 97.2 0.00054 2.3E-08 51.3 5.7 55 367-425 24-78 (333) 31 1zxm_A TOPO IIA ATPase, DNA to 96.8 0.0028 1.2E-07 45.2 6.3 84 366-452 51-149 (400) 32 1kij_A DNA gyrase subunit B; t 96.5 0.0054 2.3E-07 42.7 6.4 86 363-452 28-127 (390) 33 1pvg_A DNA topoisomerase II; G 96.5 0.0033 1.4E-07 44.6 5.0 83 367-452 64-161 (418) 34 1ei1_A DNA gyrase B, GYRB; ATP 96.5 0.0044 1.8E-07 43.5 5.7 83 366-452 33-129 (391) 35 2cg9_A ATP-dependent molecular 96.5 0.0063 2.7E-07 42.1 6.3 82 388-472 63-177 (677) 36 3cwv_A DNA gyrase, B subunit, 96.4 0.011 4.7E-07 40.0 7.3 100 362-471 25-126 (369) 37 3ied_A Heat shock protein; HSP 96.2 0.0085 3.6E-07 41.0 5.6 59 388-449 120-189 (272) 38 3g7e_A DNA gyrase subunit B; i 96.1 0.0068 2.8E-07 41.9 4.9 108 365-476 19-161 (203) 39 1y4s_A Chaperone protein HTPG; 96.1 0.012 4.9E-07 39.9 6.1 63 386-449 60-134 (559) 40 2no2_A HIP-I, huntingtin-inter 95.7 0.04 1.7E-06 35.3 7.3 39 220-258 69-107 (107) 41 2ioq_A Chaperone protein HTPG; 95.6 0.02 8.2E-07 37.9 5.4 86 360-449 23-134 (624) 42 3peh_A Endoplasmin homolog; st 95.3 0.028 1.2E-06 36.6 5.5 63 387-450 80-153 (281) 43 2o1u_A Endoplasmin; GRP94, HSP 95.1 0.028 1.2E-06 36.6 5.0 108 360-473 41-201 (666) 44 1s16_A Topoisomerase IV subuni 94.9 0.028 1.2E-06 36.6 4.5 88 361-452 25-126 (390) 45 1qy5_A Endoplasmin; GRP94, NEC 94.9 0.039 1.6E-06 35.3 5.3 36 388-424 63-98 (269) 46 1uyl_A HSP 86, heat shock prot 94.6 0.059 2.5E-06 33.8 5.7 56 387-446 76-142 (236) 47 2ior_A Chaperone protein HTPG; 94.6 0.052 2.2E-06 34.3 5.3 58 388-448 84-153 (235) 48 3fv5_A DNA topoisomerase 4 sub 94.6 0.015 6.2E-07 38.9 2.4 104 361-473 11-128 (201) 49 2wer_A ATP-dependent molecular 94.5 0.029 1.2E-06 36.5 3.8 83 361-447 23-129 (220) 50 2gqp_A Endoplasmin; GRP94, HSP 94.5 0.049 2.1E-06 34.5 4.9 34 388-422 67-100 (236) 51 1yc1_A HSP 86, heat shock prot 93.4 0.087 3.7E-06 32.4 4.5 61 387-450 104-174 (264) 52 3g75_A DNA gyrase subunit B; a 93.3 0.072 3E-06 33.1 4.0 90 363-472 16-107 (184) 53 1wa9_A Period circadian protei 85.9 0.17 7.1E-06 29.9 0.8 27 242-268 289-315 (368) 54 1vhw_A Purine nucleoside phosp 68.1 2.3 9.5E-05 20.2 2.1 55 360-417 20-74 (253) 55 2b94_A Purine nucleoside phosp 66.6 5 0.00021 17.3 4.5 53 360-416 43-95 (267) 56 1z34_A Purine nucleoside phosp 62.9 3.5 0.00015 18.6 2.3 54 360-416 17-70 (235) 57 1wma_A Carbonyl reductase [NAD 58.4 6.7 0.00028 16.2 3.3 18 443-460 206-224 (276) 58 3bje_A Nucleoside phosphorylas 57.5 3.7 0.00015 18.4 1.6 74 346-422 29-112 (349) 59 3ddo_A Urdpase, upase, uridine 56.8 3.5 0.00015 18.6 1.4 54 360-417 23-76 (253) 60 1q1g_A Uridine phosphorylase p 53.4 7.7 0.00032 15.7 2.7 53 361-417 23-75 (276) 61 1odk_A Purine nucleoside phosp 48.3 7.7 0.00032 15.7 2.1 53 361-416 19-71 (235) 62 3ijr_A Oxidoreductase, short c 47.4 8.2 0.00035 15.4 2.1 29 362-391 255-283 (291) 63 2uzp_A Protein kinase C gamma 46.9 9.7 0.00041 14.8 2.6 48 381-429 2-49 (144) 64 2ac7_A Purine nucleoside phosp 46.3 8.5 0.00036 15.3 2.0 53 360-415 17-69 (235) 65 1vr7_A Adometdc, samdc, S-aden 42.8 11 0.00046 14.3 5.8 82 346-428 16-115 (142) 66 3o38_A Short chain dehydrogena 39.3 12 0.00052 13.9 2.0 29 362-391 233-261 (266) 67 2vz8_A Fatty acid synthase; tr 38.8 11 0.00047 14.3 1.7 14 407-420 2407-2420(2512) 68 3e9n_A Putative short-chain de 35.1 14 0.00059 13.4 2.1 18 361-378 199-216 (245) 69 1e7w_A Pteridine reductase; di 35.1 13 0.00054 13.8 1.5 21 363-383 255-275 (291) 70 3op4_A 3-oxoacyl-[acyl-carrier 34.7 13 0.00055 13.7 1.5 27 363-390 214-240 (248) 71 1zmo_A Halohydrin dehalogenase 33.5 15 0.00062 13.2 2.1 20 364-383 212-231 (244) 72 1nff_A Putative oxidoreductase 33.5 14 0.00058 13.5 1.5 29 362-391 206-234 (260) 73 2dkn_A 3-alpha-hydroxysteroid 33.3 14 0.00059 13.4 1.5 30 361-391 213-242 (255) 74 3lf2_A Short chain oxidoreduct 33.1 14 0.00061 13.3 1.5 29 362-391 229-257 (265) 75 2bgk_A Rhizome secoisolaricire 33.0 14 0.0006 13.4 1.5 21 363-383 231-251 (278) 76 2b4q_A Rhamnolipids biosynthes 32.6 15 0.00061 13.3 1.5 28 363-391 243-270 (276) 77 1edo_A Beta-keto acyl carrier 32.6 15 0.00063 13.2 1.5 21 363-383 210-231 (244) 78 2o23_A HADH2 protein; HSD17B10 32.6 15 0.00062 13.3 1.5 16 363-378 230-245 (265) 79 1ulu_A Enoyl-acyl carrier prot 32.4 15 0.00065 13.1 2.4 21 363-383 221-241 (261) 80 3euf_A Uridine phosphorylase 1 32.3 11 0.00046 14.4 0.8 92 360-469 75-185 (328) 81 1h5q_A NADP-dependent mannitol 32.2 15 0.00063 13.2 1.5 17 367-383 235-251 (265) 82 1w6u_A 2,4-dienoyl-COA reducta 32.2 15 0.00063 13.2 1.5 29 362-391 238-266 (302) 83 1x1t_A D(-)-3-hydroxybutyrate 32.1 15 0.00065 13.1 1.5 28 363-391 226-253 (260) 84 3ezl_A Acetoacetyl-COA reducta 32.1 15 0.00064 13.2 1.5 29 362-391 221-249 (256) 85 1yde_A Retinal dehydrogenase/r 32.0 15 0.00065 13.1 1.5 28 362-391 218-245 (270) 86 2gdz_A NAD+-dependent 15-hydro 32.0 15 0.00064 13.2 1.5 40 362-410 221-260 (267) 87 3d7l_A LIN1944 protein; APC893 32.0 16 0.00066 13.0 2.1 12 362-373 76-87 (202) 88 3gvc_A Oxidoreductase, probabl 32.0 16 0.00066 13.0 2.0 29 362-391 240-268 (277) 89 2zat_A Dehydrogenase/reductase 31.9 16 0.00065 13.1 1.5 28 363-391 225-252 (260) 90 1mxh_A Pteridine reductase 2; 31.9 16 0.00066 13.0 1.5 21 363-383 240-260 (276) 91 3is3_A 17BETA-hydroxysteroid d 31.8 15 0.00064 13.1 1.5 27 363-390 238-264 (270) 92 3e03_A Short chain dehydrogena 31.8 15 0.00065 13.1 1.5 22 362-383 214-235 (274) 93 1zk4_A R-specific alcohol dehy 31.6 16 0.00065 13.1 1.5 21 363-383 217-237 (251) 94 1cyd_A Carbonyl reductase; sho 31.6 16 0.00065 13.0 1.5 28 363-391 210-237 (244) 95 3a28_C L-2.3-butanediol dehydr 31.5 16 0.00067 13.0 1.6 29 362-391 223-251 (258) 96 1d7o_A Enoyl-[acyl-carrier pro 31.3 16 0.00067 13.0 3.8 28 363-391 254-281 (297) 97 1k2w_A Sorbitol dehydrogenase; 31.3 16 0.00067 12.9 1.5 29 362-391 221-249 (256) 98 1uls_A Putative 3-oxoacyl-acyl 31.2 16 0.00067 13.0 1.5 27 363-390 207-233 (245) 99 1yxm_A Pecra, peroxisomal tran 31.1 16 0.00067 13.0 1.5 29 362-391 233-261 (303) 100 3edm_A Short chain dehydrogena 31.1 16 0.00067 12.9 1.5 21 363-383 217-237 (259) 101 2yv4_A Hypothetical protein PH 31.1 7.9 0.00033 15.6 -0.1 90 361-457 9-103 (105) 102 1ooe_A Dihydropteridine reduct 31.0 16 0.00068 12.9 1.5 16 363-378 196-211 (236) 103 3lyl_A 3-oxoacyl-(acyl-carrier 31.0 16 0.00068 12.9 1.5 26 363-389 213-238 (247) 104 2pnf_A 3-oxoacyl-[acyl-carrier 30.8 16 0.00068 12.9 1.5 21 363-383 216-236 (248) 105 2uvd_A 3-oxoacyl-(acyl-carrier 30.7 16 0.00068 12.9 1.5 21 363-383 213-233 (246) 106 2nwq_A Probable short-chain de 30.7 16 0.00069 12.9 2.1 11 381-393 188-198 (272) 107 1sby_A Alcohol dehydrogenase; 30.7 16 0.00069 12.9 1.5 12 380-393 167-178 (254) 108 1gee_A Glucose 1-dehydrogenase 30.6 16 0.00069 12.9 1.5 29 362-391 218-246 (261) 109 2wsb_A Galactitol dehydrogenas 30.5 16 0.00069 12.9 1.5 29 362-391 219-247 (254) 110 1ja9_A 4HNR, 1,3,6,8-tetrahydr 30.3 17 0.00069 12.8 1.5 28 363-391 242-269 (274) 111 2qhx_A Pteridine reductase 1; 30.3 17 0.00069 12.8 1.5 12 380-393 250-261 (328) 112 3cxt_A Dehydrogenase with diff 30.1 17 0.0007 12.8 1.5 29 362-391 249-277 (291) 113 2pd6_A Estradiol 17-beta-dehyd 30.0 17 0.0007 12.8 1.5 29 362-391 223-251 (264) 114 3d3w_A L-xylulose reductase; u 29.8 17 0.00071 12.8 1.5 29 362-391 209-237 (244) 115 2bd0_A Sepiapterin reductase; 29.7 17 0.00071 12.7 1.6 14 364-377 209-222 (244) 116 1g0o_A Trihydroxynaphthalene r 29.7 17 0.00071 12.7 1.5 29 362-391 249-277 (283) 117 1o5i_A 3-oxoacyl-(acyl carrier 29.5 17 0.00072 12.7 1.5 29 362-391 212-240 (249) 118 2a4k_A 3-oxoacyl-[acyl carrier 29.3 17 0.00072 12.7 1.5 53 362-424 207-259 (263) 119 2z1n_A Dehydrogenase; reductas 29.1 17 0.00072 12.7 1.5 21 363-383 227-247 (260) 120 2ae2_A Protein (tropinone redu 29.1 17 0.00072 12.7 1.5 29 362-391 222-250 (260) 121 3guy_A Short-chain dehydrogena 28.8 17 0.00073 12.6 2.3 11 462-472 210-220 (230) 122 1xkq_A Short-chain reductase f 28.8 17 0.00073 12.6 1.5 27 363-390 230-257 (280) 123 2c07_A 3-oxoacyl-(acyl-carrier 28.6 18 0.00074 12.6 2.0 20 364-383 253-272 (285) 124 3i4f_A 3-oxoacyl-[acyl-carrier 28.6 18 0.00074 12.6 1.5 29 362-391 219-247 (264) 125 3f9i_A 3-oxoacyl-[acyl-carrier 28.5 18 0.00074 12.6 1.5 29 362-391 214-242 (249) 126 1iy8_A Levodione reductase; ox 28.5 18 0.00074 12.6 1.5 29 362-391 231-259 (267) 127 1oaa_A Sepiapterin reductase; 28.4 18 0.00074 12.6 2.6 14 364-377 232-245 (259) 128 2x9g_A PTR1, pteridine reducta 28.3 18 0.00074 12.6 1.7 21 363-383 252-272 (288) 129 1ae1_A Tropinone reductase-I; 28.3 18 0.00075 12.6 1.5 29 362-391 235-263 (273) 130 1geg_A Acetoin reductase; SDR 28.2 18 0.00075 12.6 1.5 29 362-391 221-249 (256) 131 2ph3_A 3-oxoacyl-[acyl carrier 28.1 15 0.00065 13.1 0.9 29 362-391 210-238 (245) 132 2rhc_B Actinorhodin polyketide 28.1 18 0.00075 12.5 1.5 29 362-391 242-270 (277) 133 2ag5_A DHRS6, dehydrogenase/re 28.1 18 0.00075 12.5 1.5 29 362-391 211-239 (246) 134 1zem_A Xylitol dehydrogenase; 27.9 18 0.00076 12.5 1.5 28 363-391 232-259 (262) 135 2ekp_A 2-deoxy-D-gluconate 3-d 27.9 18 0.00076 12.5 1.5 29 362-391 204-232 (239) 136 1hxh_A 3BETA/17BETA-hydroxyste 27.8 18 0.00076 12.5 1.5 29 362-391 216-244 (253) 137 1fjh_A 3alpha-hydroxysteroid d 27.7 18 0.00076 12.5 3.1 30 361-391 215-244 (257) 138 3imf_A Short chain dehydrogena 27.6 18 0.00076 12.5 1.5 28 362-390 218-245 (257) 139 3osu_A 3-oxoacyl-[acyl-carrier 27.6 18 0.00076 12.5 1.5 21 363-383 213-233 (246) 140 3ftp_A 3-oxoacyl-[acyl-carrier 27.4 18 0.00077 12.5 1.5 29 362-391 235-263 (270) 141 2nm0_A Probable 3-oxacyl-(acyl 27.4 18 0.00077 12.4 1.5 21 363-383 218-238 (253) 142 1uzm_A 3-oxoacyl-[acyl-carrier 27.3 18 0.00077 12.4 1.5 29 362-391 211-239 (247) 143 1wex_A Hypothetical protein (r 27.3 18 0.00077 12.4 1.5 28 402-429 17-44 (104) 144 3lmm_A Uncharacterized protein 27.2 18 0.00077 12.4 6.8 131 327-474 263-407 (583) 145 1xg5_A ARPG836; short chain de 27.1 18 0.00078 12.4 1.5 21 363-383 248-268 (279) 146 3dii_A Short-chain dehydrogena 26.8 19 0.00079 12.4 3.1 17 362-378 199-215 (247) 147 1je0_A MTAP;, 5'-methylthioade 26.7 19 0.00079 12.3 2.1 53 361-417 19-71 (236) 148 2cq1_A PTB-like protein L; RRM 25.9 19 0.00081 12.2 1.7 68 402-474 17-89 (101) 149 1fmc_A 7 alpha-hydroxysteroid 25.9 18 0.00075 12.6 0.9 26 363-389 219-244 (255) 150 3gaf_A 7-alpha-hydroxysteroid 25.9 19 0.00081 12.2 1.7 29 362-391 219-247 (256) 151 1dhr_A Dihydropteridine reduct 25.7 18 0.00076 12.5 0.9 28 363-391 200-227 (241) 152 3grp_A 3-oxoacyl-(acyl carrier 25.7 19 0.00082 12.2 1.5 29 362-391 231-259 (266) 153 1gz6_A Estradiol 17 beta-dehyd 25.5 20 0.00082 12.2 1.5 20 334-353 173-192 (319) 154 2o2s_A Enoyl-acyl carrier redu 25.4 20 0.00083 12.2 3.2 27 363-390 261-287 (315) 155 2ew8_A (S)-1-phenylethanol deh 25.0 20 0.00084 12.1 1.5 21 363-383 215-235 (249) 156 1x4d_A Matrin 3; structural ge 24.9 20 0.00084 12.1 1.6 40 401-440 16-56 (102) 157 2cfc_A 2-(R)-hydroxypropyl-COM 24.7 20 0.00085 12.1 1.5 29 362-391 215-243 (250) 158 2d1y_A Hypothetical protein TT 24.5 20 0.00086 12.0 1.5 29 362-391 213-241 (256) 159 3gk3_A Acetoacetyl-COA reducta 24.3 20 0.00084 12.1 0.9 27 362-389 234-260 (269) 160 2q2v_A Beta-D-hydroxybutyrate 24.2 21 0.00087 12.0 1.5 30 361-391 219-248 (255) 161 1xhl_A Short-chain dehydrogena 24.2 21 0.00087 12.0 1.5 29 362-391 247-276 (297) 162 3oec_A Carveol dehydrogenase ( 24.0 21 0.00087 12.0 1.5 28 363-391 282-309 (317) 163 3gr6_A Enoyl-[acyl-carrier-pro 23.9 21 0.00088 12.0 2.3 21 363-383 225-245 (260) 164 2hq1_A Glucose/ribitol dehydro 23.7 21 0.00088 11.9 1.5 29 362-391 213-241 (247) 165 3n74_A 3-ketoacyl-(acyl-carrie 23.6 21 0.00089 11.9 1.5 21 363-383 223-243 (261) 166 2ayx_A Sensor kinase protein R 23.6 0.18 7.4E-06 29.7 -9.7 65 403-473 29-94 (254) 167 3lt0_A Enoyl-ACP reductase; tr 23.5 21 0.00089 11.9 2.1 28 363-391 291-318 (329) 168 2dtx_A Glucose 1-dehydrogenase 23.5 21 0.00089 11.9 3.1 29 362-391 214-242 (264) 169 1spx_A Short-chain reductase f 23.5 21 0.00089 11.9 1.5 29 362-391 229-258 (278) 170 3grk_A Enoyl-(acyl-carrier-pro 23.3 21 0.0009 11.9 2.3 29 362-391 243-271 (293) 171 1hdc_A 3-alpha, 20 beta-hydrox 23.2 21 0.0009 11.9 1.5 27 364-391 212-238 (254) 172 2fwm_X 2,3-dihydro-2,3-dihydro 23.0 22 0.00091 11.8 3.1 29 362-391 214-242 (250) 173 3i1j_A Oxidoreductase, short c 23.0 22 0.00091 11.8 3.1 10 363-372 114-123 (247) 174 2cq2_A Hypothetical protein LO 22.9 15 0.00064 13.1 0.1 66 403-471 28-99 (114) 175 3k31_A Enoyl-(acyl-carrier-pro 22.9 22 0.00091 11.8 1.7 29 362-391 242-270 (296) 176 3f1l_A Uncharacterized oxidore 22.8 22 0.00092 11.8 1.5 26 363-389 215-240 (252) 177 2zpa_A Uncharacterized protein 22.5 22 0.00093 11.8 1.9 104 361-472 359-498 (671) 178 1x5p_A Negative elongation fac 22.1 19 0.00078 12.4 0.4 65 402-474 17-85 (97) 179 2hjm_A Hypothetical protein PF 21.9 23 0.00095 11.7 4.9 36 265-300 50-85 (103) 180 3ksu_A 3-oxoacyl-acyl carrier 21.8 18 0.00076 12.5 0.3 20 442-461 169-189 (262) 181 1uay_A Type II 3-hydroxyacyl-C 21.8 23 0.00095 11.6 3.0 26 362-390 207-232 (242) 182 3ojf_A Enoyl-[acyl-carrier-pro 21.7 23 0.00096 11.6 1.2 21 363-383 221-241 (257) 183 3nrc_A Enoyl-[acyl-carrier-pro 21.6 23 0.00096 11.6 2.0 28 363-391 240-267 (280) 184 2ad9_A Polypyrimidine tract-bi 21.5 23 0.00096 11.6 1.0 38 402-439 33-70 (119) 185 1zmt_A Haloalcohol dehalogenas 21.5 23 0.00096 11.6 2.1 44 362-414 211-254 (254) 186 3icc_A Putative 3-oxoacyl-(acy 21.3 23 0.00097 11.6 1.5 49 328-376 72-124 (255) 187 1vl8_A Gluconate 5-dehydrogena 21.0 23 0.00098 11.5 1.5 27 364-391 234-260 (267) 188 2ptg_A Enoyl-acyl carrier redu 21.0 23 0.00098 11.5 2.1 107 327-461 119-237 (319) 189 2wbr_A GW182, gawky, LD47780P; 20.6 19 0.00079 12.4 0.2 68 402-475 9-80 (89) 190 1x4f_A Matrin 3; structural ge 20.5 20 0.00084 12.1 0.3 39 402-440 27-66 (112) No 1 >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Probab=100.00 E-value=0 Score=449.17 Aligned_cols=236 Identities=31% Similarity=0.508 Sum_probs=215.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999889999977642013899999999985033687893789999999999999999999999999874220015 Q gi|254780701|r 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 (495) Q Consensus 241 ~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~ 320 (495) +.++.+++|++|++++||||||||++|.||+++|.+.. ...+++++++|++.|.+++++|..||+++||+||+|+|.++ T Consensus 12 rl~~~~~~k~~f~a~isHELrtPL~~I~~~~~~l~~~~-~~~~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~e~~~~~ 90 (258) T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSL-GELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258) T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTG-GGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999999979998589999999999997145-56999999999999999999999999999999844279987 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEE Q ss_conf 653101199999999999999997311221000367610-1047989999887776556886067988---799999997 Q gi|254780701|r 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT 396 (495) Q Consensus 321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~ 396 (495) ++.+++|+.+++++++..+.+.+..+++.+.++.+++.| .+++|+.+|+||+.||++||+|||++|| .|.+.+.. T Consensus 91 l~~~~~~l~~l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~- 169 (258) T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE- 169 (258) T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE- T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE- T ss_conf 4215876999999999999999997697899970899866999879999999999999999855358982489999960- Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH Q ss_conf 69859999987899789878544226523157776789998880589999999961985999979899529889847247 Q gi|254780701|r 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495) .++.+.|+|+|+|+|||++++++||+||||++++.++..+|+||||+|||+|+++|||+|+++|++|+||+|+++||..+ T Consensus 170 ~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~~~~~~G~GLGL~i~k~iv~~hgG~I~v~S~~g~Gt~f~i~lP~~~ 249 (258) T 2c2a_A 170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258) T ss_dssp ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC T ss_pred CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC T ss_conf 59989999998289889899998745988288888899994048999999999983998999955999269999961897 Q ss_pred CC Q ss_conf 07 Q gi|254780701|r 477 VL 478 (495) Q Consensus 477 ~~ 478 (495) .. T Consensus 250 ~~ 251 (258) T 2c2a_A 250 AG 251 (258) T ss_dssp -- T ss_pred CC T ss_conf 57 No 2 >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Probab=100.00 E-value=6.7e-43 Score=384.79 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=192.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119 Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495) Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495) -.+|.|++||||||||++|.||+++|.++.. .++..+++++.|.++.++|..+++++|+++|.+.+ +.+++++ T Consensus 14 lg~l~a~isHElrtPLt~I~~~~~ll~~~~~---~~~~~~~~~~~i~~~~~rl~~li~~ll~~~~~~~~----~~~~~~l 86 (244) T 3d36_A 14 VTHLAASISHEIRNPLTAARGFIQLIEEQPL---AADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244) T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHGGGCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCEEECH T ss_conf 9999999999986799999999999977899---86999999999999999999999999987276878----9716649 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC Q ss_conf 99999999999999973112210003676101047989999887776556886067988799999997698599999878 Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 (495) Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt 408 (495) ..+++++++.+.+.+..+++.+....++ ..+++|+.+|+||+.||++||+||+|+||.|.|.+.. +++.+.|+|+|+ T Consensus 87 ~~~i~~~~~~~~~~~~~~~i~~~~~~~~--~~v~~d~~~l~qvl~NLl~NAik~~~~~~~i~i~~~~-~~~~v~i~V~D~ 163 (244) T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP--FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSI-DNGRVLIRIADT 163 (244) T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEE-ETTEEEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-ECCEEEEEEEEC T ss_conf 9999999999999975168599950798--4699779999999999999999867689768999996-088899999986 Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH Q ss_conf 99789878544226523157776789998880589999999961985999979899529889847247 Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495) |+|||++++++||+|||+.. ..+|+||||+|||+|++.|||+|+++|++|+||+|+++||.+. T Consensus 164 G~GI~~e~~~~iFepF~~tk-----~~~GtGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~lP~~~ 226 (244) T 3d36_A 164 GVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS 226 (244) T ss_dssp SSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC T ss_pred CCCCCHHHHHHHCCCCCCCC-----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC T ss_conf 88989899998669986589-----9996476899999999988997999966999669999987899 No 3 >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} Probab=100.00 E-value=4e-42 Score=378.19 Aligned_cols=217 Identities=28% Similarity=0.428 Sum_probs=195.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99988999997764201389999999998503368789378999999999999999999999999987422001565310 Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 (495) Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~ 325 (495) ..++++|++++||||||||++|.|++++|..... +++..+++++.|.++++||..+|+++|+++|. +..++.++ T Consensus 129 ~~~l~~~~~~iaHelrnPL~~I~~~~~~l~~~~~---~~~~~~~~l~~i~~~~~rl~~li~~ll~~~~~---~~~~~~~~ 202 (349) T 3a0r_A 129 LSILGEMTARVAHEIRNPITIIGGFIMRMKKHLD---DPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTE 202 (349) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS---CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEE T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCC T ss_conf 9999999997655502426799999999971479---97999999999999999999999889987344---33356676 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEE Q ss_conf 11999999999999999973112210003676101047989999887776556886067988799999997698599999 Q gi|254780701|r 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 (495) Q Consensus 326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V 405 (495) +|+.+++++++..+.+.+..+++++..+.++..+.+++|+.+|+||+.||++||+||+++||.|+|+++. .++.++|+| T Consensus 203 ~~l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~g~I~v~~~~-~~~~v~i~V 281 (349) T 3a0r_A 203 FNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYTKVRVSV 281 (349) T ss_dssp EEHHHHHHHHHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEE-ETTEEEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEE T ss_conf 5799999999999999998669189997278870899857899999999999999976799669999995-354899999 Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEECHHH Q ss_conf 878997898785442265231577767899988805899999999-61985999979899529889847247 Q gi|254780701|r 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve-~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495) +|+|+|||++++++||+|||+. +.+|+||||+|||+|++ .|||.|+++|. |+||+|+++||.++ T Consensus 282 ~D~G~Gi~~~~~~~iFepF~tt------k~~GtGLGL~i~k~iv~~~hgG~i~~~s~-~~Gt~F~i~lP~~~ 346 (349) T 3a0r_A 282 WNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPKTP 346 (349) T ss_dssp EEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC-SSEEEEEEEEESCT T ss_pred EECCCCCCHHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECCCC T ss_conf 9789998989998726996318------98973557999999999848998999977-99779999935998 No 4 >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Probab=100.00 E-value=6.9e-43 Score=384.73 Aligned_cols=213 Identities=25% Similarity=0.373 Sum_probs=193.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH Q ss_conf 99999776420138999999999850336878937899999999999999999999999998742200156531011999 Q gi|254780701|r 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 (495) Q Consensus 251 ~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~ 330 (495) +|++++||||||||++|.|++|++..... +++..++++..|.+++++|..+|+++|++||+|.+...++.+++++.+ T Consensus 4 ~F~a~iSHELrTPLt~I~~~~ell~~~~~---~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~~~~~~~~~~~~~~l~~ 80 (222) T 3jz3_A 4 RFTSDAAHELRSPLTALKVQTEVAQLSDD---DPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLED 80 (222) T ss_dssp ---------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHH T ss_conf 99999999982899999999999854799---989999999999999999999999999998763055646544442899 Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCC Q ss_conf 99999999999997311221000367610104798999988777655688606798879999999769859999987899 Q gi|254780701|r 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 (495) Q Consensus 331 li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~ 410 (495) ++++++..+.+.+..+++.+.+..+++.+.+.+|+.+|+||+.|||+||+||||+||.|.|++. .+ . +.|+|+|+ T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAikys~~~~~I~i~~~--~~-~--~~v~D~G~ 155 (222) T 3jz3_A 81 LLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--AD-N--FIVRDNGP 155 (222) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--SS-E--EEEECSCC T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--EE-E--EEECCCCC T ss_conf 9999999999999974957999707766468326999999999999999986899967999997--42-4--99835899 Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH Q ss_conf 7898785442265231577767899988805899999999619859999798995298898472 Q gi|254780701|r 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495) Q Consensus 411 GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495) |||++++++||+||||.++ +..+|+||||+|||+|+++|||+|+++|.+|+||+|+++|+- T Consensus 156 GI~~e~~~~iFe~F~r~~~---~~~~G~GLGL~Ivk~iv~~hgG~I~v~s~~~~Gt~f~i~F~E 216 (222) T 3jz3_A 156 GVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE 216 (222) T ss_dssp -----------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC T ss_pred CCCHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC T ss_conf 9899999986179741899---999952678999999999839989999779898799999773 No 5 >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Probab=100.00 E-value=1.4e-32 Score=296.26 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=186.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99988999997764201389999999998503368789378999999999999999999999999987422001565310 Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 (495) Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~ 325 (495) +...+++++.+.||.+||++.|.+..+-+++.. ..++..+++++.+..+..++..+++++|++++.+.+...+.... T Consensus 118 ~~~f~~~l~~il~~~~~~l~~la~gl~e~~~~~---~~~~~~~~~Ld~~~~s~~~~~~li~~~L~l~~~~~~~vg~i~~~ 194 (388) T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI---EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTR 194 (388) T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEE T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 999999999998701649999999999998517---86699999999999978789999999998502478865532788 Q ss_pred CCHHHHHHHHHHHHHHHHHHCC-CCCEECCCCC-CHHCCCCHHHHHHHHHHHHHHHHHCCCCCC--------EEEEEEEE Q ss_conf 1199999999999999997311-2210003676-101047989999887776556886067988--------79999999 Q gi|254780701|r 326 ISLIDIVRECIIMLQLRAQEKN-IEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG--------RVHVTVGW 395 (495) Q Consensus 326 v~L~~li~~~~~~~~~~A~~~~-~~l~~~~~~~-~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG--------~V~v~~~~ 395 (495) +++.++++++...+...+..+. ....+.+... ...+.+||..|+||+.||+.||+|||++++ .|.|.+. T Consensus 195 ~~l~~vi~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~dp~~L~~il~NLL~NAikat~e~~~~~~~~~p~I~v~i~- 273 (388) T 1gkz_A 195 LSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA- 273 (388) T ss_dssp ECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE- T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE- T ss_conf 9999999999999999999853887403434788736147889999999999999999977167555777884799997- Q ss_pred ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC--------------------CCCCCCCHHHHHHHHHHHCCCE Q ss_conf 76985999998789978987854422652315777678--------------------9998880589999999961985 Q gi|254780701|r 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------------------AEQGVGLGLPIAQSIMANHGGQ 455 (495) Q Consensus 396 ~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~--------------------~~~GtGLGLaIvk~lve~hgG~ 455 (495) ..++.+.|.|+|+|+|||+|++++||++||+......+ ...|+||||+|||.+++.|||+ T Consensus 274 ~~~~~v~I~I~D~G~GIp~e~l~~IF~~fyTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~isr~~ae~~GG~ 353 (388) T 1gkz_A 274 NNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGS 353 (388) T ss_dssp ECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCE T ss_pred ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCE T ss_conf 15886999998699987999998762755246765555543333212111135566789888704499999999986997 Q ss_pred EEEEEECCCCEEEEEEECH Q ss_conf 9999798995298898472 Q gi|254780701|r 456 FLIRSKLREGVEVIAILPN 474 (495) Q Consensus 456 i~v~S~~G~Gt~f~v~LP~ 474 (495) |+++|.+|.||+|+++||. T Consensus 354 I~v~S~~G~GT~~~l~L~~ 372 (388) T 1gkz_A 354 LQLQSLQGIGTDVYLRLRH 372 (388) T ss_dssp EEEEEETTTEEEEEEEEEC T ss_pred EEEEEECCCCEEEEEEECC T ss_conf 8999547964699999789 No 6 >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Probab=100.00 E-value=9.2e-32 Score=289.32 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=185.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- Q ss_conf 9998899999776420138999----999999850336878937899999999999999999999999998742200--- Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR--- 318 (495) Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~--- 318 (495) .....+|...++|++++|.+.| .|+.|+...........+...++++.+..+...+..|+++.+.+.+-.... T Consensus 93 ~~~~~~F~~~l~~~~~~h~~~i~~la~G~~El~~~~~~~~~~~~~l~~~Ld~~~~~ri~~r~Li~q~l~l~~~~~~~~~~ 172 (394) T 2e0a_A 93 QKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPS 172 (394) T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 89999999999999965526999999999999864034634289999999999984677999999899973354457855 Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCC-----EECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC------ Q ss_conf -1565310119999999999999999731---1221-----000367610104798999988777655688606------ Q gi|254780701|r 319 -YELSESAISLIDIVRECIIMLQLRAQEK---NIEI-----FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT------ 383 (495) Q Consensus 319 -~~l~~~~v~L~~li~~~~~~~~~~A~~~---~~~l-----~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T------ 383 (495) ...-...+++.++++++.+.....+... ...+ ....++..+.+.+||.+|+|||.||+.||+||| T Consensus 173 ~ig~I~~~~~~~~vi~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~L~~il~NLl~NAikat~e~~~~ 252 (394) T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394) T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 33641566989999999999999999986367876236676200699986899889999999999999999999863877 Q ss_pred -CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf -7988799999997698599999878997898785442265231577------767899988805899999999619859 Q gi|254780701|r 384 -AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI------AIKSAEQGVGLGLPIAQSIMANHGGQF 456 (495) Q Consensus 384 -~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~------~~~~~~~GtGLGLaIvk~lve~hgG~i 456 (495) +.++.|.|.+.. .++.+.|.|+|+|+|||++++++||++||+... +.++..+|+||||+|||.+++.|||+| T Consensus 253 ~~~~~~I~v~v~~-~~~~v~I~VsD~G~GI~~e~l~~IF~~fytt~~~~~~~~s~~~~~~GtGlGL~isr~i~~~hgG~I 331 (394) T 2e0a_A 253 QPSLTPIEVIVVL-GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDL 331 (394) T ss_dssp SSSCCCEEEEEEE-CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEE T ss_pred CCCCCEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 8988728999962-799799999966999898999876165520787565665556898961376999999999879979 Q ss_pred EEEEECCCCEEEEEEECHHH--CCCCCCCCCCCCC Q ss_conf 99979899529889847247--0746998764434 Q gi|254780701|r 457 LIRSKLREGVEVIAILPNTR--VLNFIPEDNHEST 489 (495) Q Consensus 457 ~v~S~~G~Gt~f~v~LP~~~--~~~~~p~~~~~~~ 489 (495) +++|.+|.||+|+++||+-. -..-.|..|..+. T Consensus 332 ~v~S~~G~GT~f~l~Lp~l~~~~~e~~p~~~~~~~ 366 (394) T 2e0a_A 332 NLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAF 366 (394) T ss_dssp EEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHH T ss_pred EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCH T ss_conf 99942798459999984889877777887786411 No 7 >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Probab=100.00 E-value=6.2e-31 Score=282.21 Aligned_cols=224 Identities=16% Similarity=0.214 Sum_probs=165.8 Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--- Q ss_conf 899999776420138999----9999998503368789378999999999999999999999999987422001565--- Q gi|254780701|r 250 SRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS--- 322 (495) Q Consensus 250 s~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~--- 322 (495) .+|...++|.++++.+.| .|+.|+...........+..++++..+..+...+..++++.+.+.+.+......+ T Consensus 97 ~~f~~~l~~i~~~h~~~i~~la~G~~El~~~~~~~~~~~e~l~~~Ld~~l~~ri~~r~li~~~l~l~~~~~~~~~~~~vg 176 (394) T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIG 176 (394) T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCBT T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99999999999715319999999999998763025456899999999999977889999999998763013666656025 Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHC-----CCCCEE--CCCC-CCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCE---- Q ss_conf --310119999999999999999731-----122100--0367-61010479899998877765568860679887---- Q gi|254780701|r 323 --ESAISLIDIVRECIIMLQLRAQEK-----NIEIFQ--KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---- 388 (495) Q Consensus 323 --~~~v~L~~li~~~~~~~~~~A~~~-----~~~l~~--~~~~-~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~---- 388 (495) ...+++.++++++.+.....+..+ .+.+.. .... ....+.+||.+|+|||.||++||+|||++++. T Consensus 177 ~I~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~i~i~~~~~~~~~~~~~~~~dp~~L~qIl~NLl~NAikat~e~~~~~~~ 256 (394) T 2btz_A 177 SIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLI 256 (394) T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTCSC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 12578999999999999999999997455887368875137899885798679999999999999999987620356888 Q ss_pred ---EEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHCCCEEEEEE Q ss_conf ---999999976985999998789978987854422652315777678999-----888058999999996198599997 Q gi|254780701|r 389 ---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-----GVGLGLPIAQSIMANHGGQFLIRS 460 (495) Q Consensus 389 ---V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~-----GtGLGLaIvk~lve~hgG~i~v~S 460 (495) |.|.+.. .++.+.|+|+|+|+|||++++++||++||+.+.+.++..+ |+||||+|||.+++.|||+|+++| T Consensus 257 ~~~I~V~i~~-~~~~v~I~V~D~G~GI~~e~l~~IF~~fytt~~~~~~~~~~~~~~G~GLGL~isk~~~~~hgG~I~v~S 335 (394) T 2btz_A 257 LPPIKVMVAL-GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFS 335 (394) T ss_dssp CCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEE T ss_pred CCCEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 8707999985-797899999889999898999987387621678777777888889815019999999998699899996 Q ss_pred ECCCCEEEEEEECH Q ss_conf 98995298898472 Q gi|254780701|r 461 KLREGVEVIAILPN 474 (495) Q Consensus 461 ~~G~Gt~f~v~LP~ 474 (495) .+|.||+|+|+||+ T Consensus 336 ~~G~GT~f~i~Lp~ 349 (394) T 2btz_A 336 MEGFGTDAVIYLKA 349 (394) T ss_dssp ETTTEEEEEEEEES T ss_pred ECCCCEEEEEEEEC T ss_conf 08961699999708 No 8 >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Probab=99.98 E-value=7e-30 Score=273.22 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=182.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99998899999776420138999----99999985033687893789999999999999999999999999874220015 Q gi|254780701|r 245 ENLAKSRFLASMSHELRTPLNAI----LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 (495) Q Consensus 245 a~~~Ks~FlA~~SHELRTPL~aI----~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~ 320 (495) .+....+|...++|++++|.+.| .|+.|+-......+...+..+.+++.+..+...+..++++.+.+++.+....+ T Consensus 102 ~~~~~~~F~~~l~~il~~h~~~i~~la~G~~El~~~~~~~~~~~e~i~~fLd~~~~~ri~~r~li~~~l~L~~~~~~~~~ 181 (407) T 2q8g_A 102 DAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSP 181 (407) T ss_dssp CHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------- T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 49999999999999986505089999999999988503465669999999999998427689998778876302246884 Q ss_pred CC-------CCCCCHHHHHHHHHHHHHHHHHHCCCC---CEE----C-CCCCCHHCCCCHHHHHHHHHHHHHHHHHCC-- Q ss_conf 65-------310119999999999999999731122---100----0-367610104798999988777655688606-- Q gi|254780701|r 321 LS-------ESAISLIDIVRECIIMLQLRAQEKNIE---IFQ----K-IDPSLSSVWADEKGMRQVILNLLSNAVKFT-- 383 (495) Q Consensus 321 l~-------~~~v~L~~li~~~~~~~~~~A~~~~~~---l~~----~-~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T-- 383 (495) .. ...+++.++++++.+.....+..+... +.+ . .+.....+.+||..|+||+.||+.||+||| T Consensus 182 ~~~~~iG~I~~~~~~~~vi~~a~~~a~~~~~~~~~~~p~v~i~~~~~~~~~~~~~~~~~p~~L~~il~nLLkNA~ratve 261 (407) T 2q8g_A 182 SHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATME 261 (407) T ss_dssp ---CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH T ss_conf 10221152145588999999999999999999753040333222013689987389953999999999999999999883 Q ss_pred -----CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC------CCCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf -----7988799999997698599999878997898785442265231------57776789998880589999999961 Q gi|254780701|r 384 -----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ------GSIAIKSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 384 -----~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r------~~~~~~~~~~GtGLGLaIvk~lve~h 452 (495) +..+.|.|.+.. .++.+.|.|+|+|+|||++++++||++||+ .+.+..+...|+||||+|||.+++.| T Consensus 262 ~~~~~~~~p~I~V~i~~-~~~~v~I~IsD~G~GI~~e~l~~IF~~fytT~~~~~~d~~~~~~~~G~GlGL~isr~~ae~~ 340 (407) T 2q8g_A 262 HHANRGVYPPIQVHVTL-GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYF 340 (407) T ss_dssp HSTTTCCCCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHT T ss_pred CCCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 37668998738999984-78479999998998979899987715543277866655556689897115499999999987 Q ss_pred CCEEEEEEECCCCEEEEEEECHH--HCCCCCCCCCCC Q ss_conf 98599997989952988984724--707469987644 Q gi|254780701|r 453 GGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNHE 487 (495) Q Consensus 453 gG~i~v~S~~G~Gt~f~v~LP~~--~~~~~~p~~~~~ 487 (495) ||+|+++|.+|.||+|+++||+- ....-.|..+.. T Consensus 341 gG~I~v~S~~G~GTd~~l~Lp~l~~~~~e~~p~~~~~ 377 (407) T 2q8g_A 341 QGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKA 377 (407) T ss_dssp TCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHH T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 9979999647962599999708998766668877865 No 9 >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Probab=99.97 E-value=1.2e-29 Score=271.15 Aligned_cols=229 Identities=16% Similarity=0.168 Sum_probs=172.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999988999997764201389999----9999985033687893789999999999999999999999999874220015 Q gi|254780701|r 245 ENLAKSRFLASMSHELRTPLNAIL----GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 (495) Q Consensus 245 a~~~Ks~FlA~~SHELRTPL~aI~----g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~ 320 (495) .+..+++|...++|+++++.+.|. |..|+...........+..+.+++.+..+-..+..++++.+.+++.+..... T Consensus 114 ~~~~~~~F~~~l~~il~~h~~~i~~la~G~~El~~~~~~~~~~~~~l~~~Ld~~~~sri~~r~Li~~~l~l~~~~~~~~~ 193 (419) T 1y8o_A 114 DPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVH 193 (419) T ss_dssp CHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSS T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 58999999999999996740499999999999876521353208999999999997356589988666543203247545 Q ss_pred CC-----CCCCCHHHHHHHHHHHHHHHHHHCCC-----CCE---ECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 65-----31011999999999999999973112-----210---003676101047989999887776556886067988 Q gi|254780701|r 321 LS-----ESAISLIDIVRECIIMLQLRAQEKNI-----EIF---QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 (495) Q Consensus 321 l~-----~~~v~L~~li~~~~~~~~~~A~~~~~-----~l~---~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG 387 (495) .+ ...+++.++++++.+.....+..+-. .+. ...++....+.+||..|+|||.||+.||+|||++++ T Consensus 194 ~~~vg~I~~~~~~~~iv~~a~~~a~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~dp~~L~qIL~NLL~NAikat~e~~ 273 (419) T 1y8o_A 194 PKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELY 273 (419) T ss_dssp TTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 45234325558899999999999999999861668640245421147998758996799999999999998999888652 Q ss_pred --------EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf --------7999999976985999998789978987854422652315------77767899988805899999999619 Q gi|254780701|r 388 --------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------SIAIKSAEQGVGLGLPIAQSIMANHG 453 (495) Q Consensus 388 --------~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~------~~~~~~~~~GtGLGLaIvk~lve~hg 453 (495) .|.|.+.. .++.+.|.|+|+|+|||++++++||++||+. +.+.++..+|+||||+|||.+++.|| T Consensus 274 ~~~~~~~P~I~V~i~~-~~~~v~I~IsD~G~GI~~e~~~~IF~~fytt~~~~~~~~~~~~~~~G~GlGL~isk~~ae~~g 352 (419) T 1y8o_A 274 EDRKEGYPAVKTLVTL-GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352 (419) T ss_dssp TTCSSCCCCEEEEEEE-CSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTT T ss_pred CCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 3467888707999985-696899999879999898999877075762688776555566898964141999999999869 Q ss_pred CEEEEEEECCCCEEEEEEECH Q ss_conf 859999798995298898472 Q gi|254780701|r 454 GQFLIRSKLREGVEVIAILPN 474 (495) Q Consensus 454 G~i~v~S~~G~Gt~f~v~LP~ 474 (495) |+|+++|.+|.||.|+++||+ T Consensus 353 G~i~v~S~~G~GT~~~l~L~~ 373 (419) T 1y8o_A 353 GDLKLYSMEGVGTDAVIYLKA 373 (419) T ss_dssp CEEEEEEETTTEEEEEEEEES T ss_pred CEEEEEEECCCCEEEEEEEEC T ss_conf 989999647963699999728 No 10 >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Probab=99.97 E-value=9.2e-30 Score=272.19 Aligned_cols=147 Identities=25% Similarity=0.379 Sum_probs=130.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE Q ss_conf 65310119999999999999999731122100036761010479899998877765568860679887999999976985 Q gi|254780701|r 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 (495) Q Consensus 321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~ 400 (495) .+.+|||+.+++++++..+...+..+++++. .++ .+.+.+|+.+|+|++.||++||+||++. +.|.|++.. .++. T Consensus 3 ~d~~pvdl~~li~~~~~~~~~~~~~~~i~~~--~~~-~~~v~~d~~~l~~vl~NLl~NAiky~~~-~~I~i~~~~-~~~~ 77 (150) T 1ysr_A 3 DDHVPVDITDLLDRAAHDAARIYPDLDVSLV--PSP-TCIIVGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVS-SRAG 77 (150) T ss_dssp CCCEEEEHHHHHHHHHHHHHHHSTTCEEEEC--SCC-CCEEEECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEE-ETTE T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--CCC-CCEEEECHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE-ECCE T ss_conf 8881508999999999999987379868997--699-9689989999999999999999974899-789999998-0999 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 999998789978987854422652315777678999888058999999996198599997989952988984724 Q gi|254780701|r 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) +.|+|+|+|+|||++++++||+||||++++ +.+|+||||+|||+++++|||+|+++|.+|+||+|+++||+. T Consensus 78 v~i~V~D~G~GI~~~~~~~iF~~F~r~~~~---~~~G~GLGL~i~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~~ 149 (150) T 1ysr_A 78 VEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150) T ss_dssp EEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC T ss_conf 999999848797989999855763417999---989607799999999998599899996699816999999849 No 11 >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Probab=99.97 E-value=3.5e-29 Score=267.25 Aligned_cols=147 Identities=27% Similarity=0.454 Sum_probs=135.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE Q ss_conf 65310119999999999999999731122100036761010479899998877765568860679887999999976985 Q gi|254780701|r 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 (495) Q Consensus 321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~ 400 (495) ++.++||+.++++++...+.+.++++++.+..+.+++.+.+++|+.+|+||+.||++||+|||++||.|.|++.. .++. T Consensus 1 Le~~~~dl~~~i~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~~~~~~~~I~i~~~~-~~~~ 79 (152) T 3a0y_A 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYTK 79 (152) T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE-CSSE T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCE T ss_conf 948897599999999999999998789899998089887999879999999999999999981499779999996-5988 Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 99999878997898785442265231577767899988805899999999-6198599997989952988984724 Q gi|254780701|r 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve-~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) +.|+|+|+|+|||++++++||+|||+. +.+|+||||+|||+|++ +|||.+.++|. +.||+|+++||.+ T Consensus 80 v~i~V~D~G~Gi~~e~~~~iFe~F~t~------k~~GtGLGL~i~k~iv~~~hgg~i~~~~~-~~Gt~f~i~lP~~ 148 (152) T 3a0y_A 80 VRVSVWNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPKT 148 (152) T ss_dssp EEEEEEEESCCCCGGGTTGGGSTTCCC------C--CCCCSHHHHHHHHHTTTSCEEEEEEE-TTEEEEEEEEESC T ss_pred EEEEEECCCCCCCHHHHHHCCCCCEEC------CCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECCC T ss_conf 999997089998999998716995188------98950679999999999958999999966-9947999995299 No 12 >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Probab=99.96 E-value=4.6e-29 Score=266.21 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=131.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEE Q ss_conf 10119999999999999999731122100036761010479899998877765568860679887999999976985999 Q gi|254780701|r 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 (495) Q Consensus 324 ~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i 403 (495) |.+++.+++++++..+.+.+.+|++++.++.+++ ..+++|+.+|+||+.||++||+|||+++ |.|++.. .++.+.| T Consensus 2 E~~~l~~ll~~~~~~~~~~~~~k~i~~~~~~~~~-~~~~~d~~~l~~vl~NLl~NAiky~~~~--i~I~~~~-~~~~~~i 77 (152) T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE-ISFVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQ-TDEHLYI 77 (152) T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT-CEEESCHHHHHHHHHHHHHHHHHHCSSE--EEEEEEE-CSSCEEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHHCCCC--EEEEEEE-ECCEEEE T ss_conf 7653999999999999999997897899974999-7799889999999999999999977998--8999999-7999999 Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH Q ss_conf 9987899789878544226523157776789998880589999999961985999979899529889847247 Q gi|254780701|r 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495) +|+|+|+|||++++++||+||||++++ .+|+||||+|||+|+++|||+|+++|.+|+||+|+++||.+. T Consensus 78 ~V~D~G~Gi~~~~~~~iF~~F~r~~~~----~~G~GLGL~i~k~iv~~h~G~I~~~s~~~~G~~f~i~lP~~~ 146 (152) T 1id0_A 78 VVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152) T ss_dssp EEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCC T ss_conf 999889998989999872897048999----897147999999999985998999975998579999987999 No 13 >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Probab=99.96 E-value=3.6e-29 Score=267.11 Aligned_cols=149 Identities=28% Similarity=0.451 Sum_probs=129.4 Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 00156531011999999999999999973112210003676101047989999887776556886067988799999997 Q gi|254780701|r 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 (495) Q Consensus 317 g~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~ 396 (495) |+ +++.+++||.+++++++..+.+. .+ .+.+...++.+.+++|+.+|+|++.|||+||+||+ +|.|.|++.. T Consensus 2 Gq-~l~~e~~dL~~l~~~~i~~~~~~--~~--~i~~~~~~~~~~v~~d~~~l~~vl~NLi~NAik~~--~~~I~i~~~~- 73 (161) T 1bxd_A 2 GQ-EMPMEMADLNAVLGEVIAAESGY--ER--EIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGT- 73 (161) T ss_dssp CC-CCCSEEECHHHHHHHHHHHHCSS--SC--CEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEE- T ss_pred CC-CCCCCEECHHHHHHHHHHHHHCC--CC--CEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHC--CCEEEEEEEE- T ss_conf 98-89873086999999999974131--28--57999669985899889999999999999999747--9859999999- Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 6985999998789978987854422652315777678999888058999999996198599997989952988984724 Q gi|254780701|r 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) +++.+.|+|+|+|+|||++++++||+||||+++++ ..+|+||||+|||+|+++|||+|+++|.+|+||+|+++||.. T Consensus 74 ~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~--~~~G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lPl~ 150 (161) T 1bxd_A 74 EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR--TISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVP 150 (161) T ss_dssp ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC--CCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCC T ss_pred ECCEEEEEEEECCCCCCHHHHHHHHCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE T ss_conf 66989999998675559999988658835887888--688866079999999998799899997399918999999843 No 14 >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3 Probab=99.95 E-value=1.9e-27 Score=252.37 Aligned_cols=150 Identities=25% Similarity=0.383 Sum_probs=128.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--- Q ss_conf 15653101199999999999999997311221000367610104798999988777655688606798879999999--- Q gi|254780701|r 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395 (495) Q Consensus 319 ~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~--- 395 (495) ++...+++++.+++++++..++... .+++++..+.+++.|.+.+|+.+|+||+.||++||+||++.++.+...... T Consensus 1 ~P~~k~~~nl~evi~~~~~l~~~~~-~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~ 79 (160) T 1r62_A 1 LPGTRVTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160) T ss_dssp ----CEEECHHHHHHHHHHHHTTTC-CTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE T ss_pred CCCCCEEECHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 9998678889999999999999875-599899998399997799889999999999999999850368961688641023 Q ss_pred -------ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE Q ss_conf -------7698599999878997898785442265231577767899988805899999999619859999798995298 Q gi|254780701|r 396 -------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 (495) Q Consensus 396 -------~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f 468 (495) ..+..+.|+|+|+|+|||+++++++|+|||+. +.+|+||||+|||+|++.|||+|+++|++| ||+| T Consensus 80 ~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~t~------k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F 152 (160) T 1r62_A 80 QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEF 152 (160) T ss_dssp EEEETTEEEEEEEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEE T ss_pred EEEEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEC------CCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEE T ss_conf 034302356846899978788977989999727872204------889986619999999998699899999489-7899 Q ss_pred EEEECHHH Q ss_conf 89847247 Q gi|254780701|r 469 IAILPNTR 476 (495) Q Consensus 469 ~v~LP~~~ 476 (495) +++||..+ T Consensus 153 ~i~lPl~~ 160 (160) T 1r62_A 153 SVYLPIRK 160 (160) T ss_dssp EEEEEEEC T ss_pred EEEEEECC T ss_conf 99998219 No 15 >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* Probab=99.94 E-value=9.2e-26 Score=237.90 Aligned_cols=204 Identities=20% Similarity=0.233 Sum_probs=160.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011 Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495) Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495) +|-++|.|++|||.++.+.+. +.+.+ .. .+.+.++.++|.+++++++|..+- .+.++ T Consensus 9 ~~ld~l~n~~gEL~~~~~~l~---~~~~~-----~~-------~~~l~~~~~~l~~l~~~L~~~~~~--------~r~~~ 65 (379) T 1b3q_A 9 EKLDNLMDLMGELVIARSRIL---ETLKK-----YN-------IKELDESLSHLSRITLDLQNVVMK--------IRMVP 65 (379) T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTSS-----CC-------CHHHHHHHHHHHHHHHHHHHHHHH--------HHEEE T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH-----HH-------HHHHHHHHHHHHHHHHHHHHHHHH--------HCCCC T ss_conf 999999999987999898889---99887-----67-------999999999999999999998757--------25011 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CHHCCCCHHHHHHHHHHHHHHHHHCCCCC------------CEEEEEEE Q ss_conf 999999999999999973112210003676-10104798999988777655688606798------------87999999 Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIG------------GRVHVTVG 394 (495) Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~-~~~v~~D~~~L~qvl~NLi~NAiK~T~~g------------G~V~v~~~ 394 (495) +.++++.+.......++.++..+.+....+ .....+|..+|+|++.||+.||+||++++ |.+.+.+. T Consensus 66 l~~~~~~~~~~v~~~a~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~ 145 (379) T 1b3q_A 66 ISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379) T ss_dssp THHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEE T ss_conf 99999999999999999719969999758873256002999999999998777764347862898864035553037999 Q ss_pred EECCCEEEEEEEECCCCCCHHH------------------------HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 9769859999987899789878------------------------5442265231577767899988805899999999 Q gi|254780701|r 395 WTSGRGQYISIKDNGPGIAEGE------------------------IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 (495) Q Consensus 395 ~~~~~~~~i~V~DtG~GI~~e~------------------------~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve 450 (495) . .++.+.++++|+|+||+++. .+.+|+||+... +..+..+|+||||+|||++++ T Consensus 146 ~-~~~~i~i~~~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~s~~-~~~~~~~G~GLGL~ivk~ive 223 (379) T 1b3q_A 146 H-EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTK-EKVSEVSGRGVGMDVVKNVVE 223 (379) T ss_dssp E-ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHH T ss_pred E-CCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCHHHHHHHHH T ss_conf 7-49879999940687766434412589840222323455467899776532464434-320137999614999999999 Q ss_pred HCCCEEEEEEECCCCEEEEEEECHHH Q ss_conf 61985999979899529889847247 Q gi|254780701|r 451 NHGGQFLIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 451 ~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495) +|||+|+++|+||+||+|+++||... T Consensus 224 ~hgG~I~V~S~~G~GTtF~i~lP~~~ 249 (379) T 1b3q_A 224 SLNGSMGIESEKDKGTKVTIRLPLTL 249 (379) T ss_dssp HTTCEEEEEEETTTEEEEEEEEESSC T ss_pred HHCCEEEEEEECCCCEEEEEEEEEEH T ss_conf 83887999961898889999996413 No 16 >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Probab=99.80 E-value=3.7e-17 Score=164.16 Aligned_cols=188 Identities=16% Similarity=0.188 Sum_probs=122.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119 Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495) Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495) ++++...+-|.+.++|++|..+.+.+.... ....+...+.+..+....+.+...+..+ ... ..+... T Consensus 28 R~ria~~lHd~v~~~Lt~i~~~~~~~~~~~--~~~~~~~~~~l~~i~~~~r~~~~~~~~~---~~~--------~~~~~~ 94 (218) T 3ehh_A 28 RQRMARDLVDTLGQKLSLMGLKSDLARKLI--YKDPEQAARELKSVQQTARTSLNEVRKI---VSS--------MKGIRL 94 (218) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHHHHHHH---HTT--------TCCCCH T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------HCCCCH T ss_conf 999999845335459999999999999753--0587999999999999999999999987---753--------023205 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEE Q ss_conf 999999999999999731122100036761010-4798999988777655688606798879999999769859999987 Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 (495) Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~D 407 (495) ........... ........+........+ ..+...+.+|+.|++.||+||.+. ..|.+.+.. .++.+.+.|.| T Consensus 95 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~ell~Na~kh~~~-~~v~i~~~~-~~~~~~i~v~D 168 (218) T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQ-LWKEVVITVSD 168 (218) T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEE-ETTEEEEEEEE T ss_pred HHHHHHHHHHH----HHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECC-CCCEEEEECCC T ss_conf 77899999999----8638848998357764457047999999999999711211455-058987414-32034322147 Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 89978987854422652315777678999888058999999996198599997989952988984724 Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) +|+|||++. .+|+||||++++++++.|||+++++|. .||+|+++||.. T Consensus 169 ng~g~~~~~------------------~~~~GlGL~~v~~~i~~~gG~i~~~s~--~Gt~~~i~lP~~ 216 (218) T 3ehh_A 169 DGTFKGEEN------------------SFSKGHGLLGMRERLEFANGSLHIDTE--NGTKLTMAIPNN 216 (218) T ss_dssp SSCCCC--------------------------CHHHHHHHHHHHTTCEEEEECS--SSEEEEEEEEC- T ss_pred CCCCCCCCC------------------CCCCCCHHHHHHHHHHHCCCEEEEECC--CCEEEEEEECCC T ss_conf 987667778------------------999982199999999988988999869--987999997199 No 17 >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Probab=99.71 E-value=1.5e-18 Score=176.14 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=105.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99998899999776420138999999999850336878937899999999999999999999999998742200156531 Q gi|254780701|r 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 (495) Q Consensus 245 a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~ 324 (495) .+.++.+|++.+|||+||||++|.||++++.. +...+++..+.....+...++ +.+ T Consensus 17 ~~~~l~~~l~~~~HdlrnpLt~I~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~-------~~~--------- 72 (192) T 1ixm_A 17 LTNELIHLLGHSRHDWMNKLQLIKGNLSLQKY--------DRVFEMIEEMVIDAKHESKLS-------NLK--------- 72 (192) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHHHHHH-------TTT--------- T ss_pred HHHHHHHHHHHCCHHHCCHHHHHHCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------HHH--------- T ss_conf 99999999985663324757787541024210--------011110112333223567776-------323--------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEECC-CCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEEEECCCEEE Q ss_conf 011999999999999999973112210003-67610104798999988777655688606798-8799999997698599 Q gi|254780701|r 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402 (495) Q Consensus 325 ~v~L~~li~~~~~~~~~~A~~~~~~l~~~~-~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g-G~V~v~~~~~~~~~~~ 402 (495) ... +.................+.+.. .+..+.+.+|+.++.|++.||+.||+||++++ +.|+|.+.. .++.+. T Consensus 73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~nli~NAi~~~~~~~~~I~i~~~~-~~~~~~ 147 (192) T 1ixm_A 73 TPH----LAFDFLTFNWKTHYMTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDH-PDRQLI 147 (192) T ss_dssp CHH----HHHHHHHGGGSCCSSEEEEEEESSCCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCC-SSSSCE T ss_pred HHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEE T ss_conf 567----787777789998863334321247763001211399999999999999887427898669999996-799999 Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCC Q ss_conf 9998789978987854422652315 Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQG 427 (495) Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~ 427 (495) |+|.|+|+|||++++++||++|||+ T Consensus 148 i~i~D~G~gi~~~~l~~i~~~~~~~ 172 (192) T 1ixm_A 148 LYLDFHGAFADPSAFDDIRQNGYED 172 (192) T ss_dssp EEEEEESCBSCGGGCC--------- T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 9999768856889999987611376 No 18 >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Probab=99.66 E-value=2.2e-15 Score=148.97 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=94.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCC-CC Q ss_conf 989999887776556886067988---799999997--698599999878997898785442265231577767899-98 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QG 437 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~--~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~-~G 437 (495) +..-|.|++.+||+||++++..++ .|.|.+... +.+...|+|+|||+||++++++.+|++|.|.+.+.++.. +| T Consensus 28 ~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~l~~~f~~f~~s~~~~~~~~~G~ 107 (530) T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM 107 (530) T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 46569999999999999888725898835999998348995789999962898999999998642034776453244786 Q ss_pred CCCHHHHHHHHHHHCCC-EEEEEEECCCCEEEEEEECHH Q ss_conf 88058999999996198-599997989952988984724 Q gi|254780701|r 438 VGLGLPIAQSIMANHGG-QFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 438 tGLGLaIvk~lve~hgG-~i~v~S~~G~Gt~f~v~LP~~ 475 (495) +||||+||+.++..|.| .++|.|++|.|++|+++.|-. T Consensus 108 ~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~ 146 (530) T 2zbk_B 108 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 146 (530) T ss_dssp SSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCC T ss_conf 544589999999980597599999458996489983344 No 19 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Probab=99.63 E-value=4.7e-15 Score=146.11 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=91.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECC--CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 989999887776556886067988---79999999769--8599999878997898785442265231577767899988 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~--~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~Gt 438 (495) +...|.|++.|||+||++|++.+| .|.|.+...++ +...|.|+|||+|||+++++++|++|++++...++...|. T Consensus 29 ~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i~~iF~r~~~~sk~~~~~~~G~ 108 (471) T 1mu5_A 29 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM 108 (471) T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 02169999999999999978855998716999997368886899999962899999999998650262567665036896 Q ss_pred -CCHHHHHHHHHHHCCCE-EEEEEECCCCEEE-EEEE Q ss_conf -80589999999961985-9999798995298-8984 Q gi|254780701|r 439 -GLGLPIAQSIMANHGGQ-FLIRSKLREGVEV-IAIL 472 (495) Q Consensus 439 -GLGLaIvk~lve~hgG~-i~v~S~~G~Gt~f-~v~L 472 (495) ||||+++..++++|+|+ +.|.|+.+.|++. .+.+ T Consensus 109 ~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l 145 (471) T 1mu5_A 109 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKL 145 (471) T ss_dssp CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEE T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE T ss_conf 2134899999999737946999994489973799873 No 20 >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Probab=99.54 E-value=6e-15 Score=145.18 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=65.5 Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 9998789978987854422652315777678999888058999999996198599997989952988984724 Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) ..+.|.|+|++.+..+.+|++|++.... ++..+|+||||+|||+++++|||+|+++|++|+||+|+++||.+ T Consensus 118 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~g~GLGL~ivk~ive~hgG~I~v~S~~g~GTtf~i~lPl~ 189 (189) T 1i58_A 118 IDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT 189 (189) T ss_dssp SCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC T ss_pred CCCCCCCCCCHHHHHHCCCEECCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC T ss_conf 1224455630243343031102212442-35689883749999999998799899996189977999999577 No 21 >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Probab=99.46 E-value=8.9e-13 Score=126.58 Aligned_cols=96 Identities=19% Similarity=0.327 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 999988777655688606---79887999999976985999998789978987854422652315777678999888058 Q gi|254780701|r 366 KGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 (495) Q Consensus 366 ~~L~qvl~NLi~NAiK~T---~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL 442 (495) .-+++++.|+++|||||. .++|.|.|++.. .++.+.|+|+|+|+|||+ .+.+|+||+... ...+|+|||| T Consensus 38 ~di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~-~~~~l~i~V~D~G~Gi~~--~~~~~~~~~~~~----~~~~~~GlGL 110 (145) T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVII-EDGVVHLTVRDEGVGIPD--IEEARQPLFTTK----PELERSGMGF 110 (145) T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE-ETTEEEEEEEECSSCCSC--HHHHTCCC-----------CCCSCHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-ECCEEEEEEEECCCCCCC--HHHCCCCCCCCC----CCCCCCCHHH T ss_conf 999999999999998843489999089999999-378999999964789585--775378775446----7999573689 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf 999999996198599997989952988984 Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 (495) Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~L 472 (495) +|+|+++ ++++++|++|+||+|+++- T Consensus 111 ~ii~~l~----d~i~i~s~~~~Gt~v~l~K 136 (145) T 1th8_A 111 TIMENFM----DEVIVESEVNKGTTVYLKK 136 (145) T ss_dssp HHHHHHS----SEEEEEEETTTEEEEEEEE T ss_pred HHHHHHC----CEEEEEECCCCCEEEEEEE T ss_conf 9999969----9999998399969999998 No 22 >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Probab=99.41 E-value=7.9e-12 Score=118.46 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=94.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE Q ss_conf 1199999999999999997311221000367610104-798999988777655688606798879999999769859999 Q gi|254780701|r 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 (495) Q Consensus 326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~-~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~ 404 (495) +.|.+.+..+.+.+ +..++.+.++.+..+..+. ..+..|.+++.++++||+||+.. +.|.|++..+ ++.+.++ T Consensus 2 i~L~eel~~~~~~l----~~~~i~~~~~~~~~~~~l~~~~~~~l~~ii~E~ltNa~kHa~a-~~v~v~l~~~-~~~~~l~ 75 (128) T 3ehg_A 2 IRLKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQL-WKEVVIT 75 (128) T ss_dssp CCHHHHHHHHHHHH----HHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEE-TTEEEEE T ss_pred CCHHHHHHHHHHHH----HHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEE-CCEEEEE T ss_conf 81799999999999----9879889998079845489789999999999999999984799-6799999987-9999999 Q ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 98789978987854422652315777678999888058999999996198599997989952988984724 Q gi|254780701|r 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 405 V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) |+|+|+|++++ ...+.|+||...++.++.+||++.++|. .||++++++|.. T Consensus 76 V~DnG~g~~~~------------------~~~~~G~GL~~~~~Rv~~~gG~l~i~s~--~Gt~v~i~iPl~ 126 (128) T 3ehg_A 76 VSDDGTFKGEE------------------NSFSKGHGLLGMRERLEFANGSLHIDTE--NGTKLTMAIPNN 126 (128) T ss_dssp EEESSCCCSCS------------------SCCCTTSHHHHHHHHHHHTTCEEEEECS--SSEEEEEEEEC- T ss_pred EEECCCCCCCC------------------CCCCCCCCHHHHHHHHHHCCCEEEEECC--CCEEEEEEEECC T ss_conf 99799454345------------------5789986699999999987999999879--998999999799 No 23 >1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1 Probab=98.78 E-value=4.4e-09 Score=94.93 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=50.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99988999997764201389999999998503368789378999999999999999999999999987 Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 (495) Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr 313 (495) ...|.+|++++||||||||++|.|+++.+.+. ..++.+.|.++.++|..||+++|++|| T Consensus 9 ~~~r~~f~a~iSHeLRTPLt~i~~~~e~l~~~---------~~~~~~~i~~~~~~m~~lv~~lL~~aR 67 (67) T 1joy_A 9 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ---------DGYLAESINKDIEECNAIIEQFIDYLR 67 (67) T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHHHHHHH---------HTHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999875276256898999999871346---------899999999999999999999998559 No 24 >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Probab=98.71 E-value=5e-08 Score=85.85 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=72.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH Q ss_conf 8999988777655688606798---8799999997698599999878997898785442265231577767899988805 Q gi|254780701|r 365 EKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 (495) Q Consensus 365 ~~~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG 441 (495) ...+..++..++.||++|...+ +.+.+......++.+.|+|+|+|+|+|+.+ .....|+| T Consensus 295 ~~~~~l~v~E~~~Nav~Hg~~~~~~~~~~~~~~~~~~~~l~i~v~D~G~g~~~~~-----------------~~~~~GrG 357 (399) T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-----------------GARGRGRG 357 (399) T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------------C T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCC-----------------CCCCCCCH T ss_conf 9899999999999899836788899719999999439999999998989989899-----------------99999657 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCCC Q ss_conf 8999999996198599997989952988984724707469 Q gi|254780701|r 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 (495) Q Consensus 442 LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~~ 481 (495) |+|++++++ ++++++.+| ||++++++|.++..... T Consensus 358 l~lv~~l~d----~~~~~~~~~-G~~v~l~~~l~~pa~~~ 392 (399) T 3ke6_A 358 LAMAEALVS----EARIMHGAG-GTTATLTHRLSRPARFV 392 (399) T ss_dssp HHHHHTTSS----EEEEEEETT-EEEEEEEEECEEECEEC T ss_pred HHHHHHHHH----CEEEEECCC-CEEEEEEEECCCCCCCC T ss_conf 999999985----777899999-49999999899877666 No 25 >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Probab=98.29 E-value=2e-05 Score=63.57 Aligned_cols=113 Identities=23% Similarity=0.249 Sum_probs=83.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC---EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-CCCCC- Q ss_conf 7989999887776556886067988---799999997698599999878997898785442265231577767-89998- Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQG- 437 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG---~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~-~~~~G- 437 (495) .+..-|.+++.-||+||+.-...-| .|.|.+...+++...|+|+|+|+|||.++++.+|.....++.-.. ...+| T Consensus 33 ~~~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~d~~~~~l~~l~~sgK~~~~~~s~G~ 112 (621) T 2q2e_B 33 SAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQ 112 (621) T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHEECCCCCCCCCCCCCCC T ss_conf 86217899899999718868976399982599999689964699999848999989999986084667787665117997 Q ss_pred CCCHHHHHHHHHHHCC-CEEEEEEEC-CCCEEEEEEECHH Q ss_conf 8805899999999619-859999798-9952988984724 Q gi|254780701|r 438 VGLGLPIAQSIMANHG-GQFLIRSKL-REGVEVIAILPNT 475 (495) Q Consensus 438 tGLGLaIvk~lve~hg-G~i~v~S~~-G~Gt~f~v~LP~~ 475 (495) .|+|.+-|-.+...|- ..++|.|.. +.+..+...+... T Consensus 113 ~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~ 152 (621) T 2q2e_B 113 QGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMIN 152 (621) T ss_dssp SSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCC T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCC T ss_conf 6656768888768642863899996179872599984156 No 26 >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} Probab=97.96 E-value=5.8e-08 Score=85.30 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=73.8 Q ss_pred HHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH Q ss_conf 99997311221000367610104798999988777655688606798879999999769859999987899789878544 Q gi|254780701|r 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 (495) Q Consensus 340 ~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~ 419 (495) ...|+.|++++.++++|++| +|||++.||++||.|.... ..+.+..- ..+ +++.+........ T Consensus 13 g~~~r~k~L~L~~~iaP~LP-------rLRQil~nLvGNA~~Gd~~-v~~~Le~l-~~~--------~~~~~~~~~~r~~ 75 (286) T 3n0r_A 13 GLVPRGSEMHLLARLAPHLP-------YIRRYARALTGDQATGDHY-VRVALEAL-AAG--------ELVLDANLSPRVA 75 (286) T ss_dssp -------CCCHHHHHGGGHH-------HHHHHHHHHHSCHHHHHHH-HHHHHHHH-HTT--------SSCCCSSSCHHHH T ss_pred CCCCCCCCCEEHHHHCCCCC-------HHHHHHHHHHCCCCHHHHH-HHHHHHHH-HCC--------CCCCCCCCCCHHH T ss_conf 86768889763444156885-------8999999984682304799-99999999-549--------5326888883078 Q ss_pred HCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC Q ss_conf 22652315777-----6789998880589999999961985999979899529889847 Q gi|254780701|r 420 VLTSFGQGSIA-----IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495) Q Consensus 420 iF~~F~r~~~~-----~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495) +|++|.|...+ .....+|+|+|+.|++++.+.+++. +.+.+..+...++ T Consensus 76 Lf~~f~~i~~s~~~~~~~~~~~g~gl~~~i~~~l~~l~~~~-----r~~~~~~~~~~~~ 129 (286) T 3n0r_A 76 LYRVFHAIWLSSGAQLEVGHDQGLHAGDDAAQRLMRIAPRS-----RQAFLLTALEGFT 129 (286) T ss_dssp HHHHHHHHHSCTTC----CCCCCCCTTSHHHHHHHHHSCHH-----HHHHHHHHTTCCC T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-----CCCCCCCCEECCC T ss_conf 89988754101465455677652047899999861035445-----4210123221257 No 27 >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Probab=97.66 E-value=0.00038 Score=52.64 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-----CC-CCCCCCCC Q ss_conf 9998877765568860679887999999976985999998789978987854422652315777-----67-89998880 Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA-----IK-SAEQGVGL 440 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~-----~~-~~~~GtGL 440 (495) ++.+|+.-||.|||..- . ..|.|.+. ++|.-.|+|.|+|.||++++++.+++++.----. .+ ...|--|- T Consensus 25 ~p~svvkELveNsiDA~-A-t~I~v~i~--~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TSK~~~~~dl~~~~t~GfRGe 100 (367) T 3h4l_A 25 DLTTAVKELVDNSIDAN-A-NQIEIIFK--DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGE 100 (367) T ss_dssp SHHHHHHHHHHHHHHTT-C-SEEEEEEE--TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTH T ss_pred CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 88999999997776489-5-98999998--79846999998999889789987654205875553223311246664407 Q ss_pred HHHHHHHHHHHCCCEEEEEEEC Q ss_conf 5899999999619859999798 Q gi|254780701|r 441 GLPIAQSIMANHGGQFLIRSKL 462 (495) Q Consensus 441 GLaIvk~lve~hgG~i~v~S~~ 462 (495) +|+-...+ +++++.|.. T Consensus 101 AL~sI~~v-----s~l~I~S~~ 117 (367) T 3h4l_A 101 ALSSLCGI-----AKLSVITTT 117 (367) T ss_dssp HHHHHHHS-----SEEEEEEES T ss_pred HHHHHHHH-----CCEEEEEEE T ss_conf 89988752-----564799850 No 28 >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Probab=97.50 E-value=0.00081 Score=49.77 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=61.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--C---CCCCCCCC-CC Q ss_conf 999887776556886067988799999997698599999878997898785442265231577--7---67899988-80 Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI--A---IKSAEQGV-GL 440 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~--~---~~~~~~Gt-GL 440 (495) .+.+++.-||.|||..- . ..|.|.+. .+|...|+|.|+|.||++++++.++++++-.-- . .+-..-|. |- T Consensus 28 ~~~s~vkELieNsiDA~-A-t~I~i~i~--~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tSK~~~~~dl~~~~t~GfRGe 103 (348) T 3na3_A 28 RPANAIKEMIENCLDAK-S-TSIQVIVK--EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGE 103 (348) T ss_dssp SHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTC T ss_pred CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCHH T ss_conf 88999999986554489-9-88999999--89878999998998889899999975245767787554221026663289 Q ss_pred HHHHHHHHHHHCCCEEEEEEECC-CCEEEEEEE Q ss_conf 58999999996198599997989-952988984 Q gi|254780701|r 441 GLPIAQSIMANHGGQFLIRSKLR-EGVEVIAIL 472 (495) Q Consensus 441 GLaIvk~lve~hgG~i~v~S~~G-~Gt~f~v~L 472 (495) +|+=.-.+ +++++.|+.. ......+.+ T Consensus 104 AL~sI~~~-----s~~~I~Sr~~~~~~~~~~~~ 131 (348) T 3na3_A 104 ALASISHV-----AHVTITTKTADGKCAYRASY 131 (348) T ss_dssp HHHHHHHS-----SEEEEEEECTTCSSEEEEEE T ss_pred HHHHHHHH-----CCEEEEEECCCCCCCCEEEE T ss_conf 99999851-----77499961256764617998 No 29 >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Probab=97.45 E-value=0.001 Score=48.88 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC-----CCCCC-CCCCCC Q ss_conf 999887776556886067988799999997698599999878997898785442265231577-----76789-998880 Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI-----AIKSA-EQGVGL 440 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~-----~~~~~-~~GtGL 440 (495) .+.+++.-||.||+..- + ..|.|.+. .+|.-.|+|+|+|.||++++++.++.+++...- -.+.. .|--|- T Consensus 34 ~~~svvkELieNSiDA~-A-t~I~I~v~--~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~d~~~~~t~GfRGe 109 (365) T 1h7s_A 34 SLSTAVKELVENSLDAG-A-TNIDLKLK--DYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGE 109 (365) T ss_dssp CHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSS T ss_pred CHHHHHHHHHHHHHCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH T ss_conf 88899999997787289-8-88999998--79843899998998759899864542023677662336533455774227 Q ss_pred HHHHHHHHHHHCCCEEEEEEEC Q ss_conf 5899999999619859999798 Q gi|254780701|r 441 GLPIAQSIMANHGGQFLIRSKL 462 (495) Q Consensus 441 GLaIvk~lve~hgG~i~v~S~~ 462 (495) +|+=...+ +++.+.|+. T Consensus 110 aL~si~~~-----s~~~i~S~~ 126 (365) T 1h7s_A 110 ALSSLCAL-----SDVTISTCH 126 (365) T ss_dssp HHHHHHHH-----SEEEEEEEC T ss_pred HHHHHHHH-----CCEEEEEEC T ss_conf 88888862-----451588843 No 30 >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Probab=97.21 E-value=0.00054 Score=51.28 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=45.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCC Q ss_conf 99988777655688606798879999999769859999987899789878544226523 Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~ 425 (495) .+.+++.-||.|||..- + ..|.|.+. .+|.-.|+|+|+|.||++++++.++++++ T Consensus 24 ~~~~~vkELveNSiDA~-A-t~I~I~v~--~~g~~~I~V~DnG~GI~~~dl~~~~~r~~ 78 (333) T 1b63_A 24 RPASVVKELVENSLDAG-A-TRIDIDIE--RGGAKLIRIRDNGCGIKKDELALALARHA 78 (333) T ss_dssp SHHHHHHHHHHHHHHTT-C-SEEEEEEE--GGGTSEEEEEECSCCCCGGGHHHHHSTTC T ss_pred CHHHHHHHHHHHHCCCC-C-CEEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHHHHC T ss_conf 78999999986302789-8-98999998--79765999998996768768888766410 No 31 >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Probab=96.79 E-value=0.0028 Score=45.17 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHHCCCCCCCCC----C Q ss_conf 999988777655688606798---87999999976985999998789978987--------85442265231577----7 Q gi|254780701|r 366 KGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEG--------EIPTVLTSFGQGSI----A 430 (495) Q Consensus 366 ~~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e--------~~~~iF~~F~r~~~----~ 430 (495) .-|.+++.-+|.||+.---.| ..|.|.+. .++. .|+|.|+|.|||-+ -.+.||....-+++ + T Consensus 51 ~GL~~l~~EildNavDe~~~g~~~~~I~V~i~--~d~~-sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~ 127 (400) T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PENN-LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDE 127 (400) T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTTT-EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGG T ss_pred CEEEEEEEEEEECHHHHHHHCCCCCEEEEEEE--CCCC-EEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCC T ss_conf 70058998999965548865579847999997--7999-89999899653200215667321024677841315668986 Q ss_pred CCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6789998880589999999961 Q gi|254780701|r 431 IKSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 431 ~~~~~~GtGLGLaIvk~lve~h 452 (495) ++...+-+|+|.+.|-.+-+.. T Consensus 128 yk~sgGlhGVG~svvNalS~~~ 149 (400) T 1zxm_A 128 KKVTGGRNGYGAKLCNIFSTKF 149 (400) T ss_dssp CCCCSCCSSCHHHHHHHTEEEE T ss_pred CEEECCCCCCCHHHHHHCCHHH T ss_conf 2363464452525551103411 No 32 >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Probab=96.55 E-value=0.0054 Score=42.69 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=58.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC-- Q ss_conf 798999988777655688606798--8799999997698599999878997898785--------4422652315777-- Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSIA-- 430 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~~-- 430 (495) .|..-|.+++.-+|.||+...-+| ..|.|.+. +++ .|+|+|+|+|||-+.. +-||.-..-+++- T Consensus 28 t~~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~--~dg--~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~ 103 (390) T 1kij_A 28 TGVEGYHHLFKEILDNAVDEALAGYATEILVRLN--EDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ 103 (390) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG T ss_pred CCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEEC--CCC--EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCC T ss_conf 9987221788766685666743699966999996--998--599998887266478667797101999989845676578 Q ss_pred --CCCCCCCCCCHHHHHHHHHHHC Q ss_conf --6789998880589999999961 Q gi|254780701|r 431 --IKSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 431 --~~~~~~GtGLGLaIvk~lve~h 452 (495) .+...+..|+|.++|--+-+.. T Consensus 104 ~~~k~sgG~nGvGa~l~NalS~~f 127 (390) T 1kij_A 104 GAYKVSGGLHGVGASVVNALSEWT 127 (390) T ss_dssp SSCCCCSCSSTTSHHHHHHTEEEE T ss_pred CCCCCCCCCCCCCCHHHHHCCHHE T ss_conf 875302675764427652325203 No 33 >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Probab=96.50 E-value=0.0033 Score=44.60 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=54.7 Q ss_pred HHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCC----CC Q ss_conf 99988777655688606798---879999999769859999987899789878--------5442265231577----76 Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSI----AI 431 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~----~~ 431 (495) -|.+++.-+|.||+.-.-+| ..|.|.+. .+++ .|+|.|+|.|||-+. .+-||....-+++ ++ T Consensus 64 Gl~~l~~EildNavDe~~~g~~~~~I~V~i~-~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~y 140 (418) T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 140 (418) T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC T ss_pred EEEEEEEEEEECHHHHHHCCCCCCEEEEEEE-CCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC T ss_conf 0024656899980247651688877999996-7998--899996990146104366786411578877403554457753 Q ss_pred CCCCCCCCCHHHHHHHHHHHC Q ss_conf 789998880589999999961 Q gi|254780701|r 432 KSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 432 ~~~~~GtGLGLaIvk~lve~h 452 (495) +...+.+|+|.++|-.+-+.. T Consensus 141 k~SGGlhGvGasvvNalS~~f 161 (418) T 1pvg_A 141 KVTGGRNGYGAKLCNIFSTEF 161 (418) T ss_dssp CCCSCCSSCHHHHHHHTEEEE T ss_pred EECCCCCCCCHHHHHHHHHHH T ss_conf 040787552640227663565 No 34 >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=96.50 E-value=0.0044 Score=43.49 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCCCC---- Q ss_conf 9999887776556886067--98879999999769859999987899789878--------544226523157776---- Q gi|254780701|r 366 KGMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSIAI---- 431 (495) Q Consensus 366 ~~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~~~---- 431 (495) .-|.+++.-+|+||+...- ....|.|.+. .++. |+|+|+|+|||-+. .+-||....-+++-. T Consensus 33 ~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~--~dgs--isV~ddGrGIPv~~h~~~~~~~~Elif~~L~tg~nfd~~~~ 108 (391) T 1ei1_A 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADNS--VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSY 108 (391) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--TTSC--EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSC T ss_pred CCCEEEEEEEEECHHHHHCCCCCCEEEEEEC--CCCE--EEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC T ss_conf 7220688888884323521499867999992--7982--99997998676777666685100899999713677799874 Q ss_pred CCCCCCCCCHHHHHHHHHHHC Q ss_conf 789998880589999999961 Q gi|254780701|r 432 KSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 432 ~~~~~GtGLGLaIvk~lve~h 452 (495) +...+-.|+|.+++.-+-+.. T Consensus 109 ~~sgG~nGvGakl~NalS~~f 129 (391) T 1ei1_A 109 KVSGGLHGVGVSVVNALSQKL 129 (391) T ss_dssp SSCSCCSSCHHHHHHHTEEEE T ss_pred EEECCCCCCCEEEEEEEECCE T ss_conf 331688765427999961555 No 35 >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Probab=96.46 E-value=0.0063 Score=42.13 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=45.0 Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHC--------CCCCCC--CCCCCCCCCCCCCHHHHHHHHHHH------ Q ss_conf 7999999976985999998789978987854422--------652315--777678999888058999999996------ Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL--------TSFGQG--SIAIKSAEQGVGLGLPIAQSIMAN------ 451 (495) Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF--------~~F~r~--~~~~~~~~~GtGLGLaIvk~lve~------ 451 (495) .|.|.. +.+.. .+.|.|||+|+.++++..-+ ..|.+. +.....--|-.|+|+.=|=-+++. T Consensus 63 ~I~i~~--d~~~~-tl~i~D~GiGMt~~e~~~~lgtIa~Sgt~~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~ 139 (677) T 2cg9_A 63 FIRITP--KPEQK-VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISK 139 (677) T ss_dssp CEEEEE--EGGGT-EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEE T ss_pred EEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEE T ss_conf 699997--58889-899995188889999999877771142599999854578601230476101467886163799970 Q ss_pred ------------CCCEEEEE-----EECCCCEEEEEEE Q ss_conf ------------19859999-----7989952988984 Q gi|254780701|r 452 ------------HGGQFLIR-----SKLREGVEVIAIL 472 (495) Q Consensus 452 ------------hgG~i~v~-----S~~G~Gt~f~v~L 472 (495) -+|...+. ...|.||+.++.| T Consensus 140 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~GT~I~L~l 177 (677) T 2cg9_A 140 SNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 177 (677) T ss_dssp CTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEE T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEEE T ss_conf 68888727999638970798403455677724899993 No 36 >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622} Probab=96.40 E-value=0.011 Score=39.98 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=59.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 4798999988777655688606798--87999999976985999998789978987854422652315777678999888 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtG 439 (495) -.|+.-|.+++.-+|+||+.=--.| ..|.|... .++. |+|+|+|+|||.+....++.---=.++.. +..+|.+ T Consensus 25 st~~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~--~Dg~--IsV~dnGrGIPv~~~~~l~~g~~f~~~~~-~~~gG~~ 99 (369) T 3cwv_A 25 DVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--GDGS--IALFCTSRTVTAENLVRVATGAGFLGRPP-GDGWGWD 99 (369) T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTSC--EEEEEEESSCCHHHHHHHHTTTTGGGSSC-CCSTTTT T ss_pred CCCCCCCEEEEEEEEECCHHHHHCCCCCEEEEEEC--CCCC--EEEEECCCCCEEEEEEEEEECCCCCCCCC-CCCCCCC T ss_conf 89998655899888653220764488877999999--9996--99992899952207788741023368777-6653466 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 05899999999619859999798995298898 Q gi|254780701|r 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 (495) Q Consensus 440 LGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~ 471 (495) -|++.| -..--.+.|+..- .|..+... T Consensus 100 Gg~svv----NalS~~~~Vev~r-~~~~~~~~ 126 (369) T 3cwv_A 100 SMLVVS----LALSSRYQVDIWA-DGRQWRVM 126 (369) T ss_dssp SSHHHH----HHTEEEEEEEEEE-TTEEEEEE T ss_pred CEEEEE----EEEEEEEEEEEEE-CCEEEEEE T ss_conf 539999----9982089999997-99799998 No 37 >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7} Probab=96.16 E-value=0.0085 Score=41.00 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=35.7 Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC-----------CCCCCCCCCCCCCHHHHHHHHH Q ss_conf 7999999976985999998789978987854422652315-----------7776789998880589999999 Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----------SIAIKSAEQGVGLGLPIAQSIM 449 (495) Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~-----------~~~~~~~~~GtGLGLaIvk~lv 449 (495) .|.|.. +.+.. .|.|+|||+||..+++..-+.--.+. ......--+..|+|+.=|=-++ T Consensus 120 ~I~I~~--Dk~~~-tltI~DnGIGMt~~el~~~LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGVGFySaFmVA 189 (272) T 3ied_A 120 IIKIKP--DKEKK-TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVS 189 (272) T ss_dssp CEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTE T ss_pred EEEEEE--CCCCC-EEEEEECCEEECHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEEEC T ss_conf 499887--58789-89999433234289998773555646539999864214443220123575417888760 No 38 >3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A* Probab=96.13 E-value=0.0068 Score=41.87 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=66.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCCC---- Q ss_conf 8999988777655688606798--879999999769859999987899789878--------54422652315777---- Q gi|254780701|r 365 EKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSIA---- 430 (495) Q Consensus 365 ~~~L~qvl~NLi~NAiK~T~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~~---- 430 (495) ..-|.+++.-+|.||+..--.| ..|.+.+ ..++ .|+|+|+|+|||-+. .+-||....-+++= T Consensus 19 ~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i--~~dg--~isV~ddG~GIPv~~h~~~~~~~~elif~~l~tg~nyd~~~ 94 (203) T 3g7e_A 19 GTGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS 94 (203) T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS--CEEEEECSSCCCCSCCTTTCCCHHHHHHHSTTCCSEECTTC T ss_pred CCCCEEEEEEEEEEHHHHHCCCCCCEEEEEE--CCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC T ss_conf 8727489998888344563159997689999--6799--79999899774564457669822068998984047788886 Q ss_pred CCCCCCCCCCHHHHHHHHHHHC------CCEE---------------EEEEECCCCEEEEEEECHHH Q ss_conf 6789998880589999999961------9859---------------99979899529889847247 Q gi|254780701|r 431 IKSAEQGVGLGLPIAQSIMANH------GGQF---------------LIRSKLREGVEVIAILPNTR 476 (495) Q Consensus 431 ~~~~~~GtGLGLaIvk~lve~h------gG~i---------------~v~S~~G~Gt~f~v~LP~~~ 476 (495) .+...+..|+|+.++--+.+.. +|.. .+.+....||++++.-..++ T Consensus 95 ~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~~~~gT~V~F~PD~~~ 161 (203) T 3g7e_A 95 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLET 161 (203) T ss_dssp CEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECSCCEEEEEEEECTTT T ss_pred CEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCCCCCCEEEEEEECCCC T ss_conf 1311675786728989862189999998999999998499298882352576899889999979310 No 39 >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Probab=96.12 E-value=0.012 Score=39.88 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=36.2 Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCC------------CCCCCCCCCCCCCHHHHHHHHH Q ss_conf 887999999976985999998789978987854422652315------------7776789998880589999999 Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------------SIAIKSAEQGVGLGLPIAQSIM 449 (495) Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~------------~~~~~~~~~GtGLGLaIvk~lv 449 (495) ++...|.+..+.+.. .|.|+|||+|+..+++..-+--..+. ..+...--|-.|+|..=|=-++ T Consensus 60 ~~~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~lgtIa~Sgt~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa 134 (559) T 1y4s_A 60 DGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559) T ss_dssp CCCCCEEEEEETTTT-EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE T ss_pred CCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 988279999738899-899996288899999998511325351899999845312554454553210012455446 No 40 >2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens} Probab=95.67 E-value=0.04 Score=35.30 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999999999999998899999776 Q gi|254780701|r 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 (495) Q Consensus 220 e~~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SH 258 (495) +......+++..+..+.+..+..+.++..|++|+|+||| T Consensus 69 eL~~~~~eL~~~~q~l~~~~~~L~~~~~ek~~fla~~sH 107 (107) T 2no2_A 69 ELQVLQGSLETSAQSEANWAAEFAELEKERDSLVSGAAH 107 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999999999999999999989999999966749 No 41 >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Probab=95.56 E-value=0.02 Score=37.92 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=43.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCC--------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH----HC Q ss_conf 104798999988777655688606--------------798879999999769859999987899789878544----22 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFT--------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT----VL 421 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T--------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~----iF 421 (495) .+|.|+. --|+-|||||.... +.++...|++..+.+.. .+.|+|||+|+.++++.. |- T Consensus 23 sLYs~~~---vflRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-tl~i~DnGiGMt~~el~~~LgtIa 98 (624) T 2ioq_A 23 SLYSNKE---IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIA 98 (624) T ss_dssp HHSSCTT---HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHHHC T ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHH T ss_conf 3688831---669999872999999999987159131078888469999759889-899995388889999998766760 Q ss_pred ----CCCCC---CCCCC-CCCCCCCCCHHHHHHHHH Q ss_conf ----65231---57776-789998880589999999 Q gi|254780701|r 422 ----TSFGQ---GSIAI-KSAEQGVGLGLPIAQSIM 449 (495) Q Consensus 422 ----~~F~r---~~~~~-~~~~~GtGLGLaIvk~lv 449 (495) ..|-+ .+... ..--|=.|+|+.=|=-++ T Consensus 99 ~Sgt~~f~~~~~~~~~~~~~~IGqFGvGfyS~FmVa 134 (624) T 2ioq_A 99 KSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624) T ss_dssp C---------------CCTTHHHHHHHHHHHHHHHE T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC T ss_conf 241799999866410244343542321200013337 No 42 >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Probab=95.31 E-value=0.028 Score=36.56 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=35.4 Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC--------CC---CCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 879999999769859999987899789878544226--------52---31577767899988805899999999 Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT--------SF---GQGSIAIKSAEQGVGLGLPIAQSIMA 450 (495) Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~--------~F---~r~~~~~~~~~~GtGLGLaIvk~lve 450 (495) +.+.|++..+.+.. .+.|.|||+|+..+++..-+- .| .+-......--+=.|+|..=|--+++ T Consensus 80 ~~~~I~i~~D~~~~-~l~I~DnGIGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAd 153 (281) T 3peh_A 80 KKLEIRISANKEKN-ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVAD 153 (281) T ss_dssp CCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEE T ss_pred CCEEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECC T ss_conf 76269988739999-899997981567899997753313434388887644125523344320312267764067 No 43 >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Probab=95.12 E-value=0.028 Score=36.60 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=56.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHH------CC--------CCC--CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 1047989999887776556886------06--------798--8799999997698599999878997898785442265 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVK------FT--------AIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK------~T--------~~g--G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~ 423 (495) .+|.|+.- -|+-|||||.. |. +.+ ..|.|.+ +.+.. .+.|+|||+|+.++++..-.-- T Consensus 41 sLYS~~eV---FlRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~--d~~~~-tl~i~DnGIGMt~~El~~~Lgt 114 (666) T 2o1u_A 41 SLYKNKEI---FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DKEKN-LLHVTDTGVGMTREELVKNLGT 114 (666) T ss_dssp TTSSSCTT---HHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHTTC T ss_pred HCCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHH T ss_conf 04698327---599898749999999999863582002788884699986--59899-8999953888899999987232 Q ss_pred CCCCCC---------------CCCCCCCCCCCHHHHHHHHHH------------------HCCCEEEEEEE----CCCCE Q ss_conf 231577---------------767899988805899999999------------------61985999979----89952 Q gi|254780701|r 424 FGQGSI---------------AIKSAEQGVGLGLPIAQSIMA------------------NHGGQFLIRSK----LREGV 466 (495) Q Consensus 424 F~r~~~---------------~~~~~~~GtGLGLaIvk~lve------------------~hgG~i~v~S~----~G~Gt 466 (495) =-+-+. +...--|-.|+|+.=|==.++ --+|...++.. ++.|| T Consensus 115 Ia~Sgt~~fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~W~s~g~~~~~~~~~~~~~~~~GT 194 (666) T 2o1u_A 115 IAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGT 194 (666) T ss_dssp -------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEECTTCCSSSSEE T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCE T ss_conf 30132899999987421012310333405774511342786799999854887750589358983574566556668973 Q ss_pred EEEEEEC Q ss_conf 9889847 Q gi|254780701|r 467 EVIAILP 473 (495) Q Consensus 467 ~f~v~LP 473 (495) +.++.|- T Consensus 195 ~I~L~lk 201 (666) T 2o1u_A 195 TITLVLK 201 (666) T ss_dssp EEEEEEC T ss_pred EEEEEEC T ss_conf 8999705 No 44 >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=94.93 E-value=0.028 Score=36.64 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=53.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC Q ss_conf 04798999988777655688606--7988799999997698599999878997898785--------4422652315777 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFT--AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSIA 430 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T--~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~~ 430 (495) .|.+..-|.+++.-+|+||+.-- .....|.|... .++. |+|.|+|+|||-+.. +-||.-+.-+++= T Consensus 25 mYiGs~gl~~~~~EildNavDe~~~~~~~~I~V~i~--~dg~--isV~dnGrGIPv~~h~~~~~~~~elif~~L~tg~nf 100 (390) T 1s16_A 25 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH--ADQS--LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 (390) T ss_dssp GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTSC--EEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS T ss_pred CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEEC--CCCE--EEEEECCCCEEECCCCCCCCCCEEEEEEEEECCCCC T ss_conf 678999852078699874650674299967999991--8986--999988995000456566877138889876036767 Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHC Q ss_conf ----6789998880589999999961 Q gi|254780701|r 431 ----IKSAEQGVGLGLPIAQSIMANH 452 (495) Q Consensus 431 ----~~~~~~GtGLGLaIvk~lve~h 452 (495) .+...+-.|+|.+++--+-+.. T Consensus 101 d~~~~k~sgG~nGvGakl~NalS~~f 126 (390) T 1s16_A 101 SNKNYQFSGGLHGVGISVVNALSKRV 126 (390) T ss_dssp SSSSCSSCSCCSSCHHHHHHHTEEEE T ss_pred CCCCCCEECCCCCCCEEEEEECCCEE T ss_conf 88774230675762458989624107 No 45 >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Probab=94.91 E-value=0.039 Score=35.35 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=24.4 Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC Q ss_conf 7999999976985999998789978987854422652 Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 (495) Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F 424 (495) .+.|....+.+.. .+.|.|||+||.++++..-+-.+ T Consensus 63 ~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~LgtI 98 (269) T 1qy5_A 63 ELTVKIKCDKEKN-LLHVTDTGVGMTREELVKNLGTI 98 (269) T ss_dssp CCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHSC T ss_pred CCEEEEECCCCCC-EEEEEECCCCCCHHHHHHHHHHH T ss_conf 8358841268874-89998276333599999887766 No 46 >1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ... Probab=94.65 E-value=0.059 Score=33.78 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=32.2 Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC----CC-------CCCCCCCCCCCCCCCCHHHHHH Q ss_conf 879999999769859999987899789878544226----52-------3157776789998880589999 Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT----SF-------GQGSIAIKSAEQGVGLGLPIAQ 446 (495) Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~----~F-------~r~~~~~~~~~~GtGLGLaIvk 446 (495) ..|.|.. +.+.. .+.|+|||+|+.++++..-+- .. .+.. ....--+-.|+|..=|= T Consensus 76 ~~I~i~~--d~~~~-tl~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-~d~~~IGqFGVGFyS~F 142 (236) T 1uyl_A 76 LHINLIP--NKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAY 142 (236) T ss_dssp CCEEEEE--ETTTT-EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGG T ss_pred CEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC-CCCCHHHHCCCCEEEEC T ss_conf 3799998--69887-89999689775789999872234303619999875501-56122211152135402 No 47 >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Probab=94.62 E-value=0.052 Score=34.27 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=33.5 Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC------------CCCCCCCCCCHHHHHHHH Q ss_conf 7999999976985999998789978987854422652315777------------678999888058999999 Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA------------IKSAEQGVGLGLPIAQSI 448 (495) Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~------------~~~~~~GtGLGLaIvk~l 448 (495) .|.|. .+.+.. .+.|.|||+||.++++..-|-...+.+.. .....+..|+|..=|--+ T Consensus 84 ~I~i~--~d~~~~-~l~I~DnGiGMt~~el~~~l~tia~S~~~~f~~~~~~~~~~~~~~IGqFGIGf~S~FmV 153 (235) T 2ior_A 84 RVRVS--FDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 153 (235) T ss_dssp CEEEE--EETTTT-EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT T ss_pred EEEEE--ECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC T ss_conf 36888--648998-89999777332478866665022023238898753311334411002345002555330 No 48 >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Probab=94.56 E-value=0.015 Score=38.94 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=58.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCC- Q ss_conf 047989999887776556886067--988799999997698599999878997898785--------442265231577- Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------PTVLTSFGQGSI- 429 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------~~iF~~F~r~~~- 429 (495) .|.+..-|.+++.-+|+||+.--- .+..|.|.+ ..++. |+|.|+|.|||-+.. +.||....-+++ T Consensus 11 MYiGs~gl~hl~~EildNaiDe~~~g~~~~i~v~~--~~d~s--itV~d~GrGIPv~~h~~~~~~~~e~i~t~l~ag~~f 86 (201) T 3fv5_A 11 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL--HADQS--LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 86 (201) T ss_dssp GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTSC--EEEEECSSCCCCSBCTTCSSBHHHHHHHCC------ T ss_pred CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEE--ECCCC--EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCC T ss_conf 26899887707868888135487548983799999--18980--999997896468586778971459999997035767 Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC Q ss_conf ---76789998880589999999961985999979899529889847 Q gi|254780701|r 430 ---AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495) Q Consensus 430 ---~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495) ..+...+..|+|.+.+--+-+.. .++.. -.|-.+..++- T Consensus 87 d~~~~k~sgG~~GvG~~~vNalS~~~----~v~v~-r~g~~~~q~f~ 128 (201) T 3fv5_A 87 SNKNYQFSGGLHGVGISVVNALSKRV----EVNVR-RDGQVYNIAFE 128 (201) T ss_dssp ---------------CHHHHHTEEEE----EEEEE-ETTEEEEEEEE T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCE----EEEEE-CCCEEEEEEEE T ss_conf 88764113775760523447651616----99994-18989999983 No 49 >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A Probab=94.50 E-value=0.029 Score=36.46 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=43.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC--------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCC Q ss_conf 04798999988777655688606--------------7988799999997698599999878997898785442265231 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFT--------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T--------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r 426 (495) +|+|+. --|+-||+||+... ..++...|++..+.+.. .+.|.|+|+|+.++++..-|....+ T Consensus 23 LYs~~~---iflRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~L~ti~~ 98 (220) T 2wer_A 23 VYSNKE---IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-VLEIRDSGIGMTKAELINNLGTIAK 98 (220) T ss_dssp CCSSTT---HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGT-EEEEEECSCCCCHHHHHHHTTTSCC T ss_pred CCCCCC---EEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCC-EEEEECCCCEECHHHHHHHHHHHHC T ss_conf 689975---018788867999999999986459501125788458998538887-7999618731138998765443403 Q ss_pred CCC----------CCCCCCCCCCCHHHHHHH Q ss_conf 577----------767899988805899999 Q gi|254780701|r 427 GSI----------AIKSAEQGVGLGLPIAQS 447 (495) Q Consensus 427 ~~~----------~~~~~~~GtGLGLaIvk~ 447 (495) ... .....-+=.|+|+.=|=- T Consensus 99 S~t~~~~~~~~~~~~~~~IGqFGIGfyS~Fm 129 (220) T 2wer_A 99 SGTKAFMEALSAGADVSMIGQFGVGFYSLFL 129 (220) T ss_dssp TTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG T ss_pred CCCHHHHHHCCCCCCCCCCCCCCEEEEEEEE T ss_conf 3437777530136541303531004778886 No 50 >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A* Probab=94.47 E-value=0.049 Score=34.49 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=23.0 Q ss_pred EEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC Q ss_conf 79999999769859999987899789878544226 Q gi|254780701|r 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 (495) Q Consensus 388 ~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~ 422 (495) .+.|.+..+.+.. .+.|.|+|+|+.++++..-+- T Consensus 67 ~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~lg 100 (236) T 2gqp_A 67 ELTVKIKCDKEKN-LLHVTDTGVGMTREELVKNLG 100 (236) T ss_dssp CCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHH T ss_pred CCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHH T ss_conf 7169997658888-899984552215999988767 No 51 >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Probab=93.38 E-value=0.087 Score=32.35 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=35.1 Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH----HCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 879999999769859999987899789878544----22652315------77767899988805899999999 Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT----VLTSFGQG------SIAIKSAEQGVGLGLPIAQSIMA 450 (495) Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~----iF~~F~r~------~~~~~~~~~GtGLGLaIvk~lve 450 (495) -.|.|.. +.+.. .+.|+|||+|+..+++.. |...+++. ++......+=.|+|..=|=-+++ T Consensus 104 ~~I~i~~--d~~~~-tl~I~DnGiGMt~~el~~~lgtIa~Sg~~~f~~~~~~~~d~~~IGqFGVGFyS~FMVAd 174 (264) T 1yc1_A 104 LHINLIP--NKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAE 174 (264) T ss_dssp CCEEEEE--ETTTT-EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEE T ss_pred CEEEEEE--CCCCC-EEEEEECCCCCCHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCEECCCCCCEEEECCCCC T ss_conf 3699987--68888-89999689877799999761650014638889875402564400001522122023477 No 52 >3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A* Probab=93.33 E-value=0.072 Score=33.07 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=50.3 Q ss_pred CCHHHHHHHHHHHHHHHHH-CCC-CCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 7989999887776556886-067-98879999999769859999987899789878544226523157776789998880 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVK-FTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK-~T~-~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL 440 (495) .|..-|.+++.-+|+||+. +.. .+..|.|.+ ..++. |+|+|+|.|||-+..+. ++-.++ T Consensus 16 t~~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~--~~d~s--i~V~D~GRGIPvd~h~~---------------~~~~~~ 76 (184) T 3g75_A 16 TSERGLHHLVWEIVDNSIDEALAGYANQIEVVI--EKDNW--IKVTDNGRGIPVDIQEK---------------MGRPAV 76 (184) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTSCCEEEEEE--CGGGC--EEEEECSSCCCCCBCTT---------------TSCBHH T ss_pred CCCCCCEEEEEEEEEHHHHHHHCCCCCEEEEEE--CCCCC--EEEEEECCCCCCCCCCC---------------CCCCHH T ss_conf 998522233101113566587559775459999--68996--99999357751110245---------------797513 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf 58999999996198599997989952988984 Q gi|254780701|r 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 (495) Q Consensus 441 GLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~L 472 (495) -+-.....+-+.==.+.+++.- .|-.++.++ T Consensus 77 e~i~t~svvNALS~~l~v~v~r-dgk~~~q~f 107 (184) T 3g75_A 77 EVILTSSVVNALSQDLEVYVHR-NETIYHQAY 107 (184) T ss_dssp HHHHTTCHHHHTEEEEEEEEEE-TTEEEEEEE T ss_pred HEEEEEEEEEECCCEEEEEEEE-CCEEEEEEE T ss_conf 1887689947168849999998-999999996 No 53 >1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A Probab=85.95 E-value=0.17 Score=29.88 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999988999997764201389999 Q gi|254780701|r 242 AEEENLAKSRFLASMSHELRTPLNAIL 268 (495) Q Consensus 242 ae~a~~~Ks~FlA~~SHELRTPL~aI~ 268 (495) .+.++..|..|++.+||||+||.+.+. T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (368) T 1wa9_A 289 QSRNTRIKEDIVKRLAETVSRPSDTVK 315 (368) T ss_dssp TTHHHHHHHHHHHHHHSCCCCCCTTSH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999986555201789999 No 54 >1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 1pk9_A* 1pk7_A* 1k9s_A* 1pke_A* 1ecp_A 1a69_A 1oty_A* 1ou4_A* 1ovg_A* 1otx_A* 1ov6_A* 1oum_A* Probab=68.06 E-value=2.3 Score=20.24 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=40.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH Q ss_conf 1047989999887776556886067988799999997698599999878997898785 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~ 417 (495) .+.|||.|.+++-.+++.|..+++...+-...+-.. ++. .|.|.-+|+|.|.... T Consensus 20 il~Gdp~R~~~ia~~~l~~~~~~~~~r~~~~~tG~y--~g~-~v~v~~~GiG~~~aai 74 (253) T 1vhw_A 20 LMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTY--KGR-RISVMGHGMGIPSCSI 74 (253) T ss_dssp EECSCHHHHHHHHHHHSEEEEEEECGGGCCEEEEEE--TTE-EEEEECCCSSHHHHHH T ss_pred EECCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEEE--CCE-EEEEEECCCCHHHHHH T ss_conf 968997999999998620858987636927999999--999-9999987948889999 No 55 >2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Probab=66.57 E-value=5 Score=17.28 Aligned_cols=53 Identities=17% Similarity=0.059 Sum_probs=37.3 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH Q ss_conf 104798999988777655688606798879999999769859999987899789878 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~ 416 (495) .+.|||.|.++|- .+++|........+-...+-.. +|. .|.|.-+|+|.|... T Consensus 43 i~~GDP~R~~~ia-~~ld~~~~~~~~R~~~~~tG~y--~G~-~V~v~s~GiG~psa~ 95 (267) T 2b94_A 43 LVVGDPGRVDKVK-MLCDSYVDLAYNREYKSVECTY--KGQ-KFLCVSHGVGSAGCA 95 (267) T ss_dssp EECSSHHHHHHHH-HTSSEEEECC---CEEEEEEEE--TTE-EEEEEEECTTCSCSH T ss_pred EECCCHHHHHHHH-HHCCCCEEEECCCCEEEEEEEE--CCE-EEEEEECCCCHHHHH T ss_conf 9689979999999-9708854552128879999999--689-999995576688899 No 56 >1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Probab=62.86 E-value=3.5 Score=18.61 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=41.1 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH Q ss_conf 104798999988777655688606798879999999769859999987899789878 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~ 416 (495) .+.|||.|.+++-..++.|+.++....|-...+-.+ +|. .|.|.-+|+|-|... T Consensus 17 i~~Gdp~Ra~~ia~~~~~~~~~~~~~r~~~~ytG~~--~g~-~V~v~~~GiG~~~aa 70 (235) T 1z34_A 17 LMCGDPLRAKLIAETYLENPKLVNNVRGIQGYTGTY--KGK-PISVMGHGMGLPSIC 70 (235) T ss_dssp EEESCHHHHHHHHHHHCEEEEEEECGGGCCEEEEEE--TTE-EEEEEECCSSHHHHH T ss_pred EECCCHHHHHHHHHHHCCCCEEEEEECCEEEEEEEE--CCE-EEEEEECCCCHHHHH T ss_conf 967997999999998703868953207848999999--999-999998897889999 No 57 >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Probab=58.39 E-value=6.7 Score=16.18 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=6.6 Q ss_pred HHHHHHHHHCCC-EEEEEE Q ss_conf 999999996198-599997 Q gi|254780701|r 443 PIAQSIMANHGG-QFLIRS 460 (495) Q Consensus 443 aIvk~lve~hgG-~i~v~S 460 (495) .+.+++.+...+ .|.+-+ T Consensus 206 ~la~~l~~~~~~~~I~vn~ 224 (276) T 1wma_A 206 IHARKLSEQRKGDKILLNA 224 (276) T ss_dssp HHHHHHHHHCTTSCCEEEE T ss_pred HHHHHHHHHHCCCCEEEEE T ss_conf 9999998874788869999 No 58 >3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural genomics, medical structural genomics of pathogenic protozoa consortium; HET: R1P; 1.44A {Trypanosoma brucei} Probab=57.54 E-value=3.7 Score=18.43 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=46.5 Q ss_pred CCCCCEECCCCC----CHHCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCEEEEEEEECCCCCCHH----- Q ss_conf 112210003676----1010479899998877765568860679-887999999976985999998789978987----- Q gi|254780701|r 346 KNIEIFQKIDPS----LSSVWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEG----- 415 (495) Q Consensus 346 ~~~~l~~~~~~~----~~~v~~D~~~L~qvl~NLi~NAiK~T~~-gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e----- 415 (495) .|....+.+.++ ...+.|||.|-+.|-.+|..+.+++... -|-...+-.. +| ..|+|.-||+|.|-- T Consensus 29 ~g~~yHl~~~~~~ia~~vl~~GDP~Ra~~ia~~~~~~~~~~~~~~R~~~~~TG~y--~G-~~Vsv~stGmG~ps~~I~~~ 105 (349) T 3bje_A 29 DGTTLHLKCKSDELADRIIFVGDPGRVDVISGYFDKDSIRASRDHREIRFATGTY--KG-TPVTVISTGMGVDNIEIVLN 105 (349) T ss_dssp TSCCSSSCCCGGGCCSEEEEESSTTHHHHHHTTSCTTCCCEEEEETTEEEEEEEE--TT-EEEEEEECCSSHHHHHHHHH T ss_pred CCCEEECCCCHHHCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHHHHH T ss_conf 9976702798231689189569989999999866507648854136679999999--99-99999963787625999999 Q ss_pred HHHHHCC Q ss_conf 8544226 Q gi|254780701|r 416 EIPTVLT 422 (495) Q Consensus 416 ~~~~iF~ 422 (495) ++-.+|+ T Consensus 106 EL~~l~~ 112 (349) T 3bje_A 106 EIHALKE 112 (349) T ss_dssp HHHHHHH T ss_pred HHHHHHC T ss_conf 9999744 No 59 >3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ... Probab=56.81 E-value=3.5 Score=18.64 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=38.6 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH Q ss_conf 1047989999887776556886067988799999997698599999878997898785 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~ 417 (495) .+.|||.|.+++-. ++.|+.+.....|-...+-.. +|. .|.|.-+|+|.|.... T Consensus 23 i~~Gdp~Ra~~ia~-~l~~~~~~~~~r~~~~ytG~~--~G~-~V~v~~~GiG~~~aai 76 (253) T 3ddo_A 23 IVPGDPERVEKIAA-LMDKPVKLASHREFTSWRAEL--DGK-AVIVCSTGIGGPSTSI 76 (253) T ss_dssp EEESCGGGHHHHHT-TSEEEEEEEEETTEEEEEEEE--TTE-EEEEECCCSSHHHHHH T ss_pred EECCCHHHHHHHHH-HHCCCEEECCCCCEEEEEEEE--CCE-EEEEEECCCCHHHHHH T ss_conf 96899899999999-707873650238848999999--999-9999967867548999 No 60 >1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A* Probab=53.43 E-value=7.7 Score=15.67 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=35.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH Q ss_conf 047989999887776556886067988799999997698599999878997898785 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~ 417 (495) +.|||.|-+.+- .++.|..+.+...+--..+-.. +| ..|.|.-+|+|.|...+ T Consensus 23 ~~GDP~Ra~~ia-~~le~~~~v~~~R~~~~~tG~y--kG-~~V~v~~~GmG~psaai 75 (276) T 1q1g_A 23 VVGDPGRVDKIK-VVCDSYVDLAYNREYKSVECHY--KG-QKFLCVSHGVGSAGCAV 75 (276) T ss_dssp EESCHHHHHHHH-TTSSEEEEEEEETTEEEEEEEE--TT-EEEEEEECCSSHHHHHH T ss_pred ECCCHHHHHHHH-HHHCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHH T ss_conf 469979999999-9818864652038769999999--89-99999835645888999 No 61 >1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Probab=48.34 E-value=7.7 Score=15.67 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=36.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHH Q ss_conf 04798999988777655688606798879999999769859999987899789878 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~ 416 (495) +.|||.|.+++-.+++.|..+++...+--..+ +.- +|. .|.|.=+|+|-|... T Consensus 19 l~Gdp~R~~~ia~~~~~~~~~~~~~r~~~~y~-G~~-~g~-~v~~~~~GiG~~~aa 71 (235) T 1odk_A 19 LPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYT-GLY-KGV-PVSVQTTGMGTPSAA 71 (235) T ss_dssp ECSCHHHHHHHHHHHCEEEEEEECGGGCCEEE-EEE-TTE-EEEEECCCSSHHHHH T ss_pred ECCCHHHHHHHHHHHCCCCEEEEECCCEEEEE-EEE-CCE-EEEEEECCCCHHHHH T ss_conf 78997999999987532869996107858999-999-999-999996897888999 No 62 >3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Probab=47.36 E-value=8.2 Score=15.43 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|++-+|. .|..|.| T Consensus 255 ~g~pedvA~~v~fL~S~~s~~i-TGq~i~V 283 (291) T 3ijr_A 255 PGQPYELAPAYVYLASSDSSYV-TGQMIHV 283 (291) T ss_dssp CBCGGGTHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8799999999999956311697-6877997 No 63 >2uzp_A Protein kinase C gamma type; transferase, polymorphism, metal-binding, zinc, calcium, zinc-finger, ATP-binding, spinocerebellar ataxia; HET: PLP; 2.0A {Homo sapiens} PDB: 1dsy_A* 3gpe_A* Probab=46.90 E-value=9.7 Score=14.80 Aligned_cols=48 Identities=6% Similarity=0.103 Sum_probs=33.1 Q ss_pred HCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC Q ss_conf 6067988799999997698599999878997898785442265231577 Q gi|254780701|r 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 (495) Q Consensus 381 K~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~ 429 (495) ++|...|.|.++++....+.+.|.|. .+.++++.+....-+||.++.- T Consensus 2 ~~~~~~G~i~l~~~~~~~~~L~V~v~-~A~~L~~~d~~g~~Dpyv~v~l 49 (144) T 2uzp_A 2 MHTERRGRLQLEIRAPTADEIHVTVG-EARNLIPMDPNGLSDPYVKLKL 49 (144) T ss_dssp CCCCSSCEEEEEEEEEETTEEEEEEE-EEESCCCCSTTSCCCEEEEEEE T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEE-ECCCCCCCCCCCCCCCEEEEEE T ss_conf 86653556999999078998999999-6879988678999791799998 No 64 >2ac7_A Purine nucleoside phosphorylase; alpha/beta fold, adenosine, sulfate ION, transferase; HET: ADN; 1.70A {Bacillus cereus} SCOP: c.56.2.1 PDB: 1xe3_A Probab=46.30 E-value=8.5 Score=15.29 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=37.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHH Q ss_conf 10479899998877765568860679887999999976985999998789978987 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e 415 (495) .+.|||.|.+++-.+++.|.-++....+-...+-.+ +|. .|.+.-+|+|.|.. T Consensus 17 il~Gdp~r~~~ia~~~~~~~~~~~~~r~~~~ytG~~--~g~-~v~i~~~GiG~~~A 69 (235) T 2ac7_A 17 LLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTY--KGK-RVSVQGTGMGVPSI 69 (235) T ss_dssp EECSSHHHHHHHHHHHCEEEEEEECGGGCCEEEEEE--TTE-EEEEECCCSSHHHH T ss_pred EECCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEEE--CCE-EEEEEECCCCHHHH T ss_conf 968997999999998564858976317806899999--999-99999768478689 No 65 >1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B* Probab=42.84 E-value=11 Score=14.33 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=50.5 Q ss_pred CCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH---------HCCCCC---------CEEEEEEEEECCCEEEEEEEE Q ss_conf 11221000367610104798999988777655688---------606798---------879999999769859999987 Q gi|254780701|r 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV---------KFTAIG---------GRVHVTVGWTSGRGQYISIKD 407 (495) Q Consensus 346 ~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi---------K~T~~g---------G~V~v~~~~~~~~~~~i~V~D 407 (495) -|..+.++.-...+.+..|+..+++++..++..+- +|.|.| +.|.++. |.+.+.+.|.|-= T Consensus 16 ~G~Hli~Dlygc~~~~L~d~~~l~~~l~~a~~~~g~tvl~~~~~~f~p~GvT~~~lLaESHisiHT-wPE~~~a~iDifs 94 (142) T 1vr7_A 16 LGRHLVAEFYECDREVLDNVQLIEQEMKQAAYESGATIVTSTFHRFLPYGVSGVVVISESHLTIHT-WPEYGYAAIDLFT 94 (142) T ss_dssp EEEEEEEEEESCCHHHHTCHHHHHHHHHHHHHHHTCCEEEEEEEECSSSCEEEEEEETTEEEEEEE-EGGGTEEEEEEEE T ss_pred CCEEEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEECCCCEEEEEE-ECCCCCEEEEEEC T ss_conf 584999999867957868999999999999998699899777697089989999992463899999-2588838999981 Q ss_pred CCCCCCHHHHHHHCCCCCCCC Q ss_conf 899789878544226523157 Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGS 428 (495) Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~ 428 (495) =|.+..++..-.....+++.+ T Consensus 95 C~~~~~p~~~~~~l~~~F~~~ 115 (142) T 1vr7_A 95 CGEDVDPWKAFEHLKKALKAK 115 (142) T ss_dssp ESTTCCHHHHHHHHHHHHTCS T ss_pred CCCCCCHHHHHHHHHHHHCCC T ss_conf 799899999999999972998 No 66 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=39.34 E-value=12 Score=13.92 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=18.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|++-+|. .|..|.| T Consensus 233 ~~~pediA~~v~fL~S~~s~~i-tG~~i~V 261 (266) T 3o38_A 233 AAEPWEVAATIAFLASDYSSYM-TGEVVSV 261 (266) T ss_dssp CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8499999999999957043797-6856886 No 67 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Probab=38.81 E-value=11 Score=14.26 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=5.1 Q ss_pred ECCCCCCHHHHHHH Q ss_conf 78997898785442 Q gi|254780701|r 407 DNGPGIAEGEIPTV 420 (495) Q Consensus 407 DtG~GI~~e~~~~i 420 (495) ..+++++++..... T Consensus 2407 ~~~~~~~~~~~~~~ 2420 (2512) T 2vz8_A 2407 QSHAGLDRHALSFA 2420 (2512) T ss_dssp -------------- T ss_pred HCCCCCCHHHHHHH T ss_conf 21434588899999 No 68 >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Probab=35.12 E-value=14 Score=13.42 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=11.1 Q ss_pred CCCCHHHHHHHHHHHHHH Q ss_conf 047989999887776556 Q gi|254780701|r 361 VWADEKGMRQVILNLLSN 378 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~N 378 (495) ..++|.-+-.++..|+++ T Consensus 199 ~~~~pedVA~av~fL~s~ 216 (245) T 3e9n_A 199 IYIEPKEIANAIRFVIDA 216 (245) T ss_dssp GGSCHHHHHHHHHHHHTS T ss_pred CCCCHHHHHHHHHHHHCC T ss_conf 881999999999999579 No 69 >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 1p33_A* Probab=35.10 E-value=13 Score=13.77 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=8.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-..+.=|+|+.-.|. T Consensus 255 g~pedvA~~v~fL~S~~s~~i 275 (291) T 1e7w_A 255 SSAAEVSDVVIFLCSSKAKYI 275 (291) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 799999999999958501695 No 70 >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Probab=34.67 E-value=13 Score=13.67 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=14.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 7989999887776556886067988799 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) ++|.-+-.++.-|+|..-.|. .|..|. T Consensus 214 ~~pedvA~~v~fL~S~~s~~i-tG~~i~ 240 (248) T 3op4_A 214 GDPREIASAVAFLASPEAAYI-TGETLH 240 (248) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEE T ss_conf 599999999999958222597-688699 No 71 >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Probab=33.54 E-value=15 Score=13.23 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=7.4 Q ss_pred CHHHHHHHHHHHHHHHHHCC Q ss_conf 98999988777655688606 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T 383 (495) +|.-+-.++.=|.|..-.|. T Consensus 212 ~peevA~~v~fL~S~~a~~i 231 (244) T 1zmo_A 212 RPDEMGALITFLASRRAAPI 231 (244) T ss_dssp CHHHHHHHHHHHHTTTTGGG T ss_pred CHHHHHHHHHHHHCCHHCCC T ss_conf 99999999999958412596 No 72 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=33.53 E-value=14 Score=13.49 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=20.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 206 ~~~pediA~~v~fL~S~~s~~i-tG~~i~V 234 (260) T 1nff_A 206 AAEPVEVSNLVVYLASDESSYS-TGAEFVV 234 (260) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8799999999999967233597-6887998 No 73 >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Probab=33.26 E-value=14 Score=13.43 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=21.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 0479899998877765568860679887999 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) -.++|.-+-+++.=|+|+.-.|. .|..|.| T Consensus 213 R~g~pedvA~~v~fL~S~~s~~i-tG~~i~V 242 (255) T 2dkn_A 213 RGSEPREVAEAIAFLLGPQASFI-HGSVLFV 242 (255) T ss_dssp SCBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 98399999999999958233795-6827898 No 74 >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Probab=33.13 E-value=14 Score=13.33 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|.+-.|. .|..|.| T Consensus 229 ~g~p~dvA~~v~fL~S~~a~~i-tG~~i~v 257 (265) T 3lf2_A 229 LGKPIEAARAILFLASPLSAYT-TGSHIDV 257 (265) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSEEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8099999999999958153695-6834788 No 75 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=32.97 E-value=14 Score=13.37 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=10.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|.|+.-+|. T Consensus 231 ~~pediA~~v~fL~Sd~s~~i 251 (278) T 2bgk_A 231 LRAEDVADAVAYLAGDESKYV 251 (278) T ss_dssp CCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 199999999999967143596 No 76 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=32.63 E-value=15 Score=13.29 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=14.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.=|+|+.-.|. .|..|.| T Consensus 243 g~pedvA~~v~fL~S~~s~~i-TG~~i~V 270 (276) T 2b4q_A 243 GRPEEMAALAISLAGTAGAYM-TGNVIPI 270 (276) T ss_dssp CCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 099999999999967322697-6874867 No 77 >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Probab=32.60 E-value=15 Score=13.21 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=7.8 Q ss_pred CCHHHHHHHHHHH-HHHHHHCC Q ss_conf 7989999887776-55688606 Q gi|254780701|r 363 ADEKGMRQVILNL-LSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NL-i~NAiK~T 383 (495) ++|.-+-.++.=| .|.+-+|. T Consensus 210 ~~pediA~~v~fLa~S~~s~~i 231 (244) T 1edo_A 210 GQPENVAGLVEFLALSPAASYI 231 (244) T ss_dssp BCHHHHHHHHHHHHHCSGGGGC T ss_pred CCHHHHHHHHHHHHCCCHHCCC T ss_conf 0999999999999779300795 No 78 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=32.55 E-value=15 Score=13.27 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=6.1 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 7989999887776556 Q gi|254780701|r 363 ADEKGMRQVILNLLSN 378 (495) Q Consensus 363 ~D~~~L~qvl~NLi~N 378 (495) ++|.-+-+++.-|.+| T Consensus 230 g~peevA~~v~fL~s~ 245 (265) T 2o23_A 230 GDPAEYAHLVQAIIEN 245 (265) T ss_dssp BCHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHC T ss_conf 2999999999999864 No 79 >1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A* Probab=32.45 E-value=15 Score=13.10 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=9.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.-|.|+.-.|- T Consensus 221 ~~peeva~~v~fL~S~~s~~i 241 (261) T 1ulu_A 221 ITQEEVGNLGLFLLSPLASGI 241 (261) T ss_dssp CCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 599999999999838322790 No 80 >3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Probab=32.33 E-value=11 Score=14.38 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=49.5 Q ss_pred HCCCCHHHHHHHHHHHHHHH-HHCCCCCCEEEEEEEEECC----CEEEEEEEECCCCCCH-----HHHHHHC-------C Q ss_conf 10479899998877765568-8606798879999999769----8599999878997898-----7854422-------6 Q gi|254780701|r 360 SVWADEKGMRQVILNLLSNA-VKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAE-----GEIPTVL-------T 422 (495) Q Consensus 360 ~v~~D~~~L~qvl~NLi~NA-iK~T~~gG~V~v~~~~~~~----~~~~i~V~DtG~GI~~-----e~~~~iF-------~ 422 (495) ++-|||.|.+++-.++..|+ ++.. +..+.--++..+- ....|+|.-||+|+|- +|+-.++ . T Consensus 75 ~~~GdP~R~~~iA~~~~~~~~l~~~--~re~~~~~g~~~ry~~YKg~pVsv~S~GMG~PS~~I~l~EL~kL~~~a~~g~~ 152 (328) T 3euf_A 75 CVGGSPSRMKAFIRCVGAELGLDCP--GRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLHELIKLLYYARCSNV 152 (328) T ss_dssp EEESCHHHHHHHHHHHHHHHTCCCT--TCCCCCTTTTCCSCCEEEETTEEEEECCSSHHHHHHHHHHHHHHHHHTTCBSC T ss_pred EECCCHHHHHHHHHHHHHHCCCCCC--CCCHHHHCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9079989999999999865267778--85331110454101057473799994688710389999999986513036862 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC--CCCEEEE Q ss_conf 5231577767899988805899999999619859999798--9952988 Q gi|254780701|r 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL--REGVEVI 469 (495) Q Consensus 423 ~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~--G~Gt~f~ 469 (495) .|-|++.+ | |+++ --|++-+.+.- ..|+... T Consensus 153 tiIRIGTc------G-gl~i---------~vGdvVIa~~Av~~~~~~~~ 185 (328) T 3euf_A 153 TIIRIGTS------G-GIGL---------EPGTVVITEQAVDTCFKAEF 185 (328) T ss_dssp EEEEEEEE------E-ESSS---------CTTCEEEEEEEECTTSCSEE T ss_pred EEEEEECC------C-CCCC---------CCCCEEEECEEECCCCCCEE T ss_conf 79998556------8-7789---------99989997402616787314 No 81 >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Probab=32.24 E-value=15 Score=13.20 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 99988777655688606 Q gi|254780701|r 367 GMRQVILNLLSNAVKFT 383 (495) Q Consensus 367 ~L~qvl~NLi~NAiK~T 383 (495) -+-.++.=|.|+.-.|. T Consensus 235 dvA~~v~fL~S~~s~~i 251 (265) T 1h5q_A 235 EMTGQAILLLSDHATYM 251 (265) T ss_dssp GGHHHHHHHHSGGGTTC T ss_pred HHHHHHHHHHCCHHCCC T ss_conf 99999999956500797 No 82 >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Probab=32.19 E-value=15 Score=13.19 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|+.-+|. .|..|.| T Consensus 238 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V 266 (302) T 1w6u_A 238 LGTVEELANLAAFLCSDYASWI-NGAVIKF 266 (302) T ss_dssp CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999957122697-7845898 No 83 >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta-hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* Probab=32.15 E-value=15 Score=13.10 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=15.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.-|.|..-+|. .|..|.| T Consensus 226 ~~p~diA~~v~fL~S~~a~~i-tG~~i~v 253 (260) T 1x1t_A 226 VTPEQLGGTAVFLASDAAAQI-TGTTVSV 253 (260) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 499999999999947132696-6887887 No 84 >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Probab=32.06 E-value=15 Score=13.16 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=17.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|+.-+|. .|..|.| T Consensus 221 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V 249 (256) T 3ezl_A 221 LGSPDEIGSIVAWLASEESGFS-TGADFSL 249 (256) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8599999999999948301697-7853887 No 85 >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Probab=32.02 E-value=15 Score=13.08 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=15.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|.| .|. .|..|.| T Consensus 218 ~g~peeiA~~v~fL~S~a-~~i-TGq~i~v 245 (270) T 1yde_A 218 MGQPAEVGAAAVFLASEA-NFC-TGIELLV 245 (270) T ss_dssp CBCHHHHHHHHHHHHHHC-TTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCC-CCC-CCCEEEE T ss_conf 849999999999993705-897-5864898 No 86 >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Probab=32.02 E-value=15 Score=13.15 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=21.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCC Q ss_conf 4798999988777655688606798879999999769859999987899 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~ 410 (495) .++|.-+-.++.=|+|| +|. .|..+.| +.+.. +.-.|.|. T Consensus 221 ~~~peevA~~v~fL~s~--~~i-tG~~i~V----dGG~~--~~~~~~~~ 260 (267) T 2gdz_A 221 ILDPPLIANGLITLIED--DAL-NGAIMKI----TTSKG--IHFQDYGS 260 (267) T ss_dssp CBCHHHHHHHHHHHHHC--TTC-SSCEEEE----ETTTE--EEECCCCS T ss_pred CCCHHHHHHHHHHHHCC--CCC-CCCEEEE----CCCCE--EECCCCCC T ss_conf 83999999999999767--889-9888998----99972--15168997 No 87 >3d7l_A LIN1944 protein; APC89317, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Probab=32.00 E-value=16 Score=13.04 Aligned_cols=12 Identities=8% Similarity=-0.227 Sum_probs=5.2 Q ss_pred CCCHHHHHHHHH Q ss_conf 479899998877 Q gi|254780701|r 362 WADEKGMRQVIL 373 (495) Q Consensus 362 ~~D~~~L~qvl~ 373 (495) ..|+..+++++. T Consensus 76 ~~~~e~~~~~~~ 87 (202) T 3d7l_A 76 ELTPEKNAVTIS 87 (202) T ss_dssp GCCHHHHHHHHH T ss_pred HCCHHHHHHHHH T ss_conf 599999999999 No 88 >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Probab=31.99 E-value=16 Score=13.04 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=17.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-.|. .|..|.| T Consensus 240 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V 268 (277) T 3gvc_A 240 MAAPEEMAGIVVFLLSDDASMI-TGTTQIA 268 (277) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 7599999999999957422696-6877998 No 89 >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Probab=31.95 E-value=16 Score=13.06 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=13.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.-|+|+.-+|. .|..|.| T Consensus 225 g~pedvA~~v~fL~S~~s~~i-TG~~i~V 252 (260) T 2zat_A 225 GNPEDCAGIVSFLCSEDASYI-TGETVVV 252 (260) T ss_dssp BCGGGGHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 899999999999958222696-6857887 No 90 >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Probab=31.86 E-value=16 Score=13.04 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=10.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-+.+.-|+|+.-.|. T Consensus 240 g~p~dvA~~v~fL~S~~s~~i 260 (276) T 1mxh_A 240 ASAAQIADAIAFLVSKDAGYI 260 (276) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 999999999999948411693 No 91 >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3itd_A Probab=31.82 E-value=15 Score=13.11 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=14.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 7989999887776556886067988799 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) ++|.-+-.++.=|.|+.-.|. .|..|. T Consensus 238 g~peevA~~v~fL~S~~s~~i-tG~~i~ 264 (270) T 3is3_A 238 GWPQDVANVVGFLVSKEGEWV-NGKVLT 264 (270) T ss_dssp BCHHHHHHHHHHHTSGGGTTC-CSCEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEE T ss_conf 799999999999958343594-686487 No 92 >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Probab=31.77 E-value=15 Score=13.09 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=13.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC Q ss_conf 4798999988777655688606 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T 383 (495) +++|.-+..+..=|+|..-.|. T Consensus 214 ~~~p~dia~~v~fL~S~~a~~i 235 (274) T 3e03_A 214 CRRPEIMADAAHAVLTREAAGF 235 (274) T ss_dssp SBCTHHHHHHHHHHHTSCCTTC T ss_pred CCCHHHHHHHHHHHHCHHHCCC T ss_conf 6999999999999959165398 No 93 >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Probab=31.59 E-value=16 Score=13.05 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|+|+.-+|. T Consensus 217 g~pediA~~v~fL~S~~s~~i 237 (251) T 1zk4_A 217 GEPNDIAYICVYLASNESKFA 237 (251) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 299999999999957332596 No 94 >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Probab=31.57 E-value=16 Score=13.05 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=15.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.=|+|+.-.|. .|..|.| T Consensus 210 ~~p~diA~~v~fL~S~~s~~i-tG~~i~V 237 (244) T 1cyd_A 210 AEVEDVVNSILFLLSDRSAST-SGGGILV 237 (244) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSSEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 099999999999957422696-7834895 No 95 >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Probab=31.51 E-value=16 Score=12.98 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|..-+|. .|..|.| T Consensus 223 ~~~peevA~~v~fL~S~~s~~i-tG~~i~v 251 (258) T 3a28_C 223 PSVPEDVAGLVSFLASENSNYV-TGQVMLV 251 (258) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8799999999999957322596-6876997 No 96 >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* Probab=31.34 E-value=16 Score=12.96 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=16.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.-|.|+.-.|. .|..|.| T Consensus 254 ~~peevA~~v~fL~S~~s~~i-TG~~i~v 281 (297) T 1d7o_A 254 LTADEVGNAAAFLVSPLASAI-TGATIYV 281 (297) T ss_dssp BCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 899999999999958411696-7864777 No 97 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=31.28 E-value=16 Score=12.95 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|.+-.|. .|..|.| T Consensus 221 ~g~pedva~~v~fL~S~~s~~i-TG~~i~v 249 (256) T 1k2w_A 221 MGRAEDLTGMAIFLATPEADYI-VAQTYNV 249 (256) T ss_dssp CBCHHHHHHHHHHTTSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999957143596-6852887 No 98 >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Probab=31.22 E-value=16 Score=12.97 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 7989999887776556886067988799 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) ++|.-+-.++.-|+|..-.|. .|..|. T Consensus 207 ~~pedia~~v~fL~S~~s~~i-TG~~i~ 233 (245) T 1uls_A 207 GKPLEVAYAALFLLSDESSFI-TGQVLF 233 (245) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEE T ss_conf 499999999999956122697-687599 No 99 >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Probab=31.15 E-value=16 Score=12.95 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=18.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-.|. .|..|.| T Consensus 233 ~g~pediA~~v~fL~Sd~s~~i-TGq~i~V 261 (303) T 1yxm_A 233 IGVPEEVSSVVCFLLSPAASFI-TGQSVDV 261 (303) T ss_dssp CBCTHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8399999999999957312696-7857886 No 100 >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=31.09 E-value=16 Score=12.94 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=9.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|.|+.-.|. T Consensus 217 g~pediA~~v~fL~S~~s~~i 237 (259) T 3edm_A 217 GSSEDVAGLVAFLASDDAAYV 237 (259) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 599999999999958401597 No 101 >2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=31.07 E-value=7.9 Score=15.58 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=52.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-----CCC Q ss_conf 047989999887776556886067988799999997698599999878997898785442265231577767-----899 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-----SAE 435 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~-----~~~ 435 (495) +.+|+.....-+..++... ...|-.|-|-+...-.....+ --|. =+++--..+|..+.+.|...- ... T Consensus 9 v~g~~~~~~~~i~~~~~~~---~~~~~~vgvl~~~~~~~~~~~---~lg~-~~~~~A~~Ly~~LR~~D~~~vd~I~~e~~ 81 (105) T 2yv4_A 9 VEGPREKVKGKITELVKEL---KERGKKVGVIGSESYNADEFF---FLGS-SVEEVAKNLFKALRYMDKAGVDVVIAEGV 81 (105) T ss_dssp EEECHHHHHHHHHHHHHHH---HHTTCCEEEEESSCTTCSEEE---ECCS-SHHHHHHHHHHHHHHHHHTTCSEEEEEEE T ss_pred EECCHHHHHHHHHHHHHHH---HHCCCEEEEEECCCCCCCEEE---ECCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9798699999999999998---852985999934765775489---7798-99999999999999982579998999818 Q ss_pred CCCCCHHHHHHHHHHHCCCEEE Q ss_conf 9888058999999996198599 Q gi|254780701|r 436 QGVGLGLPIAQSIMANHGGQFL 457 (495) Q Consensus 436 ~GtGLGLaIvk~lve~hgG~i~ 457 (495) +.+|+|++|--+|-.+-||+|- T Consensus 82 ~~~g~g~AImnRL~KAA~~~ii 103 (105) T 2yv4_A 82 EERGLGLAVMNRLRKASGYKIV 103 (105) T ss_dssp SGGGHHHHHHHHC---CCCEEE T ss_pred CCCCCHHHHHHHHHHHCCCCCC T ss_conf 9978189999999986568975 No 102 >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=31.01 E-value=16 Score=12.92 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=7.1 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 7989999887776556 Q gi|254780701|r 363 ADEKGMRQVILNLLSN 378 (495) Q Consensus 363 ~D~~~L~qvl~NLi~N 378 (495) .+|..+...+..++++ T Consensus 196 ~~pe~va~~v~~~l~~ 211 (236) T 1ooe_A 196 TPLSFISEHLLKWTTE 211 (236) T ss_dssp BCHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHCC T ss_conf 9999999999999659 No 103 >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Probab=30.98 E-value=16 Score=12.91 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=14.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 798999988777655688606798879 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495) ++|.-+-.++.=|+|++-+|. .|..| T Consensus 213 ~~pedvA~~v~fL~S~~a~~i-tG~~i 238 (247) T 3lyl_A 213 GEPKDIAAAVAFLASEEAKYI-TGQTL 238 (247) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEE T ss_conf 799999999999948022697-68748 No 104 >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* Probab=30.82 E-value=16 Score=12.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|.|+.-.|. T Consensus 216 ~~pediA~~v~fL~S~~s~~i 236 (248) T 2pnf_A 216 GSPEEVANVVLFLCSELASYI 236 (248) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 199999999999958511597 No 105 >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Probab=30.73 E-value=16 Score=12.88 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=11.3 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|.|+.-+|. T Consensus 213 ~~pedvA~~v~fL~S~~a~~i 233 (246) T 2uvd_A 213 GEAQDIANAVTFFASDQSKYI 233 (246) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 799999999999948222697 No 106 >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Probab=30.69 E-value=16 Score=12.88 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.4 Q ss_pred HCCCCCCEEEEEE Q ss_conf 6067988799999 Q gi|254780701|r 381 KFTAIGGRVHVTV 393 (495) Q Consensus 381 K~T~~gG~V~v~~ 393 (495) .+-+. | |+|.+ T Consensus 188 El~~~-g-IrVn~ 198 (272) T 2nwq_A 188 DLQGT-G-VRVTN 198 (272) T ss_dssp TCTTS-C-CEEEE T ss_pred HHCCC-C-EEEEE T ss_conf 85746-8-39989 No 107 >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 1mg5_A* Probab=30.67 E-value=16 Score=12.87 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=4.8 Q ss_pred HHCCCCCCEEEEEE Q ss_conf 86067988799999 Q gi|254780701|r 380 VKFTAIGGRVHVTV 393 (495) Q Consensus 380 iK~T~~gG~V~v~~ 393 (495) ..+.+. | |+|.+ T Consensus 167 ~e~~~~-g-IrVn~ 178 (254) T 1sby_A 167 KLAPIT-G-VTAYS 178 (254) T ss_dssp HHHHHH-S-EEEEE T ss_pred HHCCCC-C-EEEEE T ss_conf 765555-9-69999 No 108 >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* Probab=30.57 E-value=16 Score=12.86 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=21.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|.+-.|. .|..|.| T Consensus 218 ~g~peeiA~~v~fL~S~~a~~i-tG~~i~v 246 (261) T 1gee_A 218 IGEPEEIAAVAAWLASSEASYV-TGITLFA 246 (261) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8799999999999957412696-6876997 No 109 >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Probab=30.54 E-value=16 Score=12.86 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=19.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|++-.|. .|..|.| T Consensus 219 ~g~p~dvA~~v~fL~S~~a~~i-tG~~i~v 247 (254) T 2wsb_A 219 CGEPSEIAAAALFLASPAASYV-TGAILAV 247 (254) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8199999999999967133596-6865887 No 110 >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Probab=30.33 E-value=17 Score=12.83 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=15.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.-|.|+.-.|. .|..|.| T Consensus 242 g~peevA~~v~fL~S~~s~~i-TG~~i~V 269 (274) T 1ja9_A 242 GYPADIGRAVSALCQEESEWI-NGQVIKL 269 (274) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 899999999999957222596-6863896 No 111 >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Probab=30.30 E-value=17 Score=12.83 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=5.0 Q ss_pred HHCCCCCCEEEEEE Q ss_conf 86067988799999 Q gi|254780701|r 380 VKFTAIGGRVHVTV 393 (495) Q Consensus 380 iK~T~~gG~V~v~~ 393 (495) ..+.+. | |+|.+ T Consensus 250 ~ela~~-g-IRVN~ 261 (328) T 2qhx_A 250 LELAPL-Q-IRVNG 261 (328) T ss_dssp HHHGGG-T-EEEEE T ss_pred HHHCCC-C-EEEEE T ss_conf 996757-7-48999 No 112 >3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* Probab=30.15 E-value=17 Score=12.81 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=17.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|++-.|. .|..|.| T Consensus 249 ~g~pediA~~v~fL~S~~s~~i-TG~~i~V 277 (291) T 3cxt_A 249 WGEAEDLMGPAVFLASDASNFV-NGHILYV 277 (291) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8099999999999957232697-6877997 No 113 >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, lipid metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Probab=30.00 E-value=17 Score=12.79 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=16.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 223 ~~~pedvA~~v~fL~S~~s~~i-tG~~i~v 251 (264) T 2pd6_A 223 LGDPEDVADVVAFLASEDSGYI-TGTSVEV 251 (264) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8399999999999958422597-5867998 No 114 >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Probab=29.83 E-value=17 Score=12.77 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=16.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|+.-.|. .|..|.| T Consensus 209 ~~~peevA~~v~fL~S~~a~~i-tG~~i~v 237 (244) T 3d3w_A 209 FAEVEHVVNAILFLLSDRSGMT-TGSTLPV 237 (244) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999957322697-6887887 No 115 >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum tls} SCOP: c.2.1.2 Probab=29.69 E-value=17 Score=12.75 Aligned_cols=14 Identities=0% Similarity=0.002 Sum_probs=5.0 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 98999988777655 Q gi|254780701|r 364 DEKGMRQVILNLLS 377 (495) Q Consensus 364 D~~~L~qvl~NLi~ 377 (495) .|.-+-..+..|++ T Consensus 209 ~PediA~~v~~l~s 222 (244) T 2bd0_A 209 MPEDIAAPVVQAYL 222 (244) T ss_dssp CHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHC T ss_conf 99999999999967 No 116 >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Probab=29.67 E-value=17 Score=12.75 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|+.-.|. .|..|.| T Consensus 249 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V 277 (283) T 1g0o_A 249 VGLPIDIARVVCFLASNDGGWV-TGKVIGI 277 (283) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8199999999999968432482-6872868 No 117 >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Probab=29.47 E-value=17 Score=12.72 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=17.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|.+-+|. .|..|.| T Consensus 212 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V 240 (249) T 1o5i_A 212 MAKPEEIASVVAFLCSEKASYL-TGQTIVV 240 (249) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999958122697-5856888 No 118 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=29.35 E-value=17 Score=12.70 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=28.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC Q ss_conf 479899998877765568860679887999999976985999998789978987854422652 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F 424 (495) .++|.-+-.++.=|+|++-.|. .|..|.| ++|.- +. .-||.|+...+.=++.+ T Consensus 207 ~g~p~eiA~~v~fL~S~~a~~i-tG~~i~v-----DGG~s---~~-~~~~~~~~~~~~~~~~~ 259 (263) T 2a4k_A 207 AGRPEEVAQAALFLLSEESAYI-TGQALYV-----DGGRS---IV-GPPGLPPGFGPKGGERH 259 (263) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE-----STTTT---TC------------------ T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE-----CCCCC---CC-CCCCCCCCCCCCCCCCC T ss_conf 8499999999999957322696-6866996-----96906---48-89999998899977765 No 119 >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix K1} Probab=29.12 E-value=17 Score=12.67 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=8.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|.|+.-.|. T Consensus 227 g~pedvA~~v~fL~S~~s~~i 247 (260) T 2z1n_A 227 GKPEELASVVAFLASEKASFI 247 (260) T ss_dssp CCHHHHHHHHHHHTSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 299999999999958432596 No 120 >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Probab=29.09 E-value=17 Score=12.67 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|..-+|. .|..|.| T Consensus 222 ~~~pedia~~v~fL~S~~s~~i-TG~~i~V 250 (260) T 2ae2_A 222 MGEPKELAAMVAFLCFPAASYV-TGQIIYV 250 (260) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999968322696-6847996 No 121 >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810} Probab=28.83 E-value=17 Score=12.64 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=3.9 Q ss_pred CCCCEEEEEEE Q ss_conf 89952988984 Q gi|254780701|r 462 LREGVEVIAIL 472 (495) Q Consensus 462 ~G~Gt~f~v~L 472 (495) ++.+-..-+++ T Consensus 210 ~~~~~v~g~~i 220 (230) T 3guy_A 210 IGNGYVSDITV 220 (230) T ss_dssp ETTEEEEEEEE T ss_pred CCCCCCCCEEE T ss_conf 65596878699 No 122 >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=28.75 E-value=17 Score=12.63 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=13.4 Q ss_pred CCHHHHHHHHHHHHH-HHHHCCCCCCEEE Q ss_conf 798999988777655-6886067988799 Q gi|254780701|r 363 ADEKGMRQVILNLLS-NAVKFTAIGGRVH 390 (495) Q Consensus 363 ~D~~~L~qvl~NLi~-NAiK~T~~gG~V~ 390 (495) ++|.-+-+++.=|.| +|-+|. .|..|. T Consensus 230 g~p~dvA~~v~fL~S~~as~~i-tG~~i~ 257 (280) T 1xkq_A 230 GKPEHIANIILFLADRNLSFYI-LGQSIV 257 (280) T ss_dssp BCHHHHHHHHHHHHCHHHHTTC-CSCEEE T ss_pred CCHHHHHHHHHHHHCCCHHCCC-CCCEEE T ss_conf 1999999999999196251781-282578 No 123 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=28.64 E-value=18 Score=12.61 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=7.1 Q ss_pred CHHHHHHHHHHHHHHHHHCC Q ss_conf 98999988777655688606 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T 383 (495) +|.-+-.++.=|+|++-.|. T Consensus 253 ~pediA~~v~fL~S~~a~~i 272 (285) T 2c07_A 253 TPEEVANLACFLSSDKSGYI 272 (285) T ss_dssp CHHHHHHHHHHHHSGGGTTC T ss_pred CHHHHHHHHHHHHCCHHCCC T ss_conf 99999999999948022697 No 124 >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovarkurstaki str} Probab=28.56 E-value=18 Score=12.60 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=20.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|+.-+|. .|..|.| T Consensus 219 ~g~pediA~~v~fL~S~~s~~i-tG~~i~V 247 (264) T 3i4f_A 219 SGTGEDIARTISFLCEDDSDMI-TGTIIEV 247 (264) T ss_dssp CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCCC-CCCEEEE T ss_conf 8499999999999958610597-6878996 No 125 >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Probab=28.53 E-value=18 Score=12.60 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=16.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 214 ~~~pedvA~~v~fL~s~~s~~i-tG~~i~v 242 (249) T 3f9i_A 214 YGIPEDVAYAVAFLASNNASYI-TGQTLHV 242 (249) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 9799999999999948312697-6866997 No 126 >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Probab=28.51 E-value=18 Score=12.60 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=19.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|+.-+|. .|..|.| T Consensus 231 ~g~p~dvA~~v~fL~S~~s~~i-tG~~i~v 259 (267) T 1iy8_A 231 YGEAPEIAAVVAFLLSDDASYV-NATVVPI 259 (267) T ss_dssp CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEC T ss_conf 8099999999999957422496-7844775 No 127 >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Probab=28.44 E-value=18 Score=12.59 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=5.2 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 98999988777655 Q gi|254780701|r 364 DEKGMRQVILNLLS 377 (495) Q Consensus 364 D~~~L~qvl~NLi~ 377 (495) +|...-+.+..|++ T Consensus 232 ~p~~vA~~i~~l~~ 245 (259) T 1oaa_A 232 DCGTSAQKLLGLLQ 245 (259) T ss_dssp CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 99999999999842 No 128 >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* 3jq7_A* 3jq8_A* ... Probab=28.34 E-value=18 Score=12.57 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=9.3 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|+|+.-.|. T Consensus 252 ~~peevA~~v~fL~S~~s~~i 272 (288) T 2x9g_A 252 ASAEQIADAVIFLVSGSAQYI 272 (288) T ss_dssp CCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 699999999999958600594 No 129 >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Probab=28.26 E-value=18 Score=12.56 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=15.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) +++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 235 ~g~pedvA~~v~fL~S~~s~~i-TG~~i~V 263 (273) T 1ae1_A 235 AGKPQEVSALIAFLCFPAASYI-TGQIIWA 263 (273) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999957322697-6837984 No 130 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=28.19 E-value=18 Score=12.55 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=21.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .+.|.-+-.++.=|.|+.-.|. .|..|.| T Consensus 221 ~g~peeiA~~v~fL~S~~a~~i-tG~~i~v 249 (256) T 1geg_A 221 LSEPEDVAACVSYLASPDSDYM-TGQSLLI 249 (256) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8199999999999968432596-6876994 No 131 >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southeast collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Probab=28.12 E-value=15 Score=13.10 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|+.-+|. .|..|.| T Consensus 210 ~~~pediA~~v~fL~S~~s~~i-tG~~i~v 238 (245) T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAGYI-TGQTLCV 238 (245) T ss_dssp CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8699999999999948301797-6887888 No 132 >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Probab=28.10 E-value=18 Score=12.54 Aligned_cols=29 Identities=7% Similarity=0.204 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|.+-+|. .|..|.| T Consensus 242 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V 270 (277) T 2rhc_B 242 YVQPSEVAEMVAYLIGPGAAAV-TAQALNV 270 (277) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8099999999999957411587-6855888 No 133 >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural genomics consortium, SGC; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Probab=28.08 E-value=18 Score=12.54 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=16.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 211 ~~~p~diA~~v~fL~S~~a~~i-tG~~i~v 239 (246) T 2ag5_A 211 FATAEEIAMLCVYLASDESAYV-TGNPVII 239 (246) T ss_dssp CEEHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCHHHCCC-CCCEEEE T ss_conf 8199999999999947043797-6854888 No 134 >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Probab=27.90 E-value=18 Score=12.51 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=14.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 232 g~p~eva~~v~fL~S~~a~~i-tG~~i~v 259 (262) T 1zem_A 232 GDINEIPGVVAFLLGDDSSFM-TGVNLPI 259 (262) T ss_dssp BCGGGSHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 199999999999957422596-6856882 No 135 >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A Probab=27.87 E-value=18 Score=12.51 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-+++.=|.|+.-.|. .|..|.| T Consensus 204 ~g~p~evA~~v~fL~S~~a~~i-tG~~i~v 232 (239) T 2ekp_A 204 WARPEEIARVAAVLCGDEAEYL-TGQAVAV 232 (239) T ss_dssp CBCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8499999999999957422697-6878898 No 136 >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Probab=27.79 E-value=18 Score=12.50 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=16.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-+++.=|.|+.-+|. .|..|.| T Consensus 216 ~~~pedvA~~v~fL~S~~s~~i-tG~~i~v 244 (253) T 1hxh_A 216 AYMPERIAQLVLFLASDESSVM-SGSELHA 244 (253) T ss_dssp EECHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8799999999999957243696-6837899 No 137 >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Probab=27.69 E-value=18 Score=12.49 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 0479899998877765568860679887999 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) -.++|.-+-.++.-|.|..-.|. .|..|.| T Consensus 215 R~g~p~evA~~v~fL~S~~s~~i-tG~~i~V 244 (257) T 1fjh_A 215 RRAEPSEMASVIAFLMSPAASYV-HGAQIVI 244 (257) T ss_dssp SCCCTHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 98099999999999958322795-7846897 No 138 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=27.60 E-value=18 Score=12.47 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=15.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 47989999887776556886067988799 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) .++|.-+-+++.=|+|..-.|. .|..|. T Consensus 218 ~g~pedia~~v~fL~S~~a~~i-tG~~i~ 245 (257) T 3imf_A 218 LGTPEEIAGLAYYLCSDEAAYI-NGTCMT 245 (257) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEE T ss_conf 8599999999999968322597-686588 No 139 >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} Probab=27.58 E-value=18 Score=12.47 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=10.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.+..=|+|+.-+|. T Consensus 213 ~~pedvA~~v~fL~S~~a~~i 233 (246) T 3osu_A 213 GQDTDIANTVAFLASDKAKYI 233 (246) T ss_dssp BCHHHHHHHHHHHTSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 799999999999958311597 No 140 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=27.44 E-value=18 Score=12.45 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=21.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|+|++-.|. .|..|.| T Consensus 235 ~~~pedvA~~v~fL~Sd~a~~i-tG~~i~v 263 (270) T 3ftp_A 235 LGSPEDIAHAVAFLASPQAGYI-TGTTLHV 263 (270) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 9899999999999948111697-6875994 No 141 >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase; oxidoreductase; 1.99A {Streptomyces coelicolor A3} Probab=27.37 E-value=18 Score=12.44 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) +.|.-+-.++.=|+|++-.|. T Consensus 218 g~pedvA~~v~fL~Sd~s~~i 238 (253) T 2nm0_A 218 ARPEEIAATVRFLASDDASYI 238 (253) T ss_dssp BCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 099999999999958311487 No 142 >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Probab=27.34 E-value=18 Score=12.44 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|+.-+|. .|..|.| T Consensus 211 ~~~p~eiA~~v~fL~S~~a~~i-tG~~i~v 239 (247) T 1uzm_A 211 VGTPAEVAGVVSFLASEDASYI-SGAVIPV 239 (247) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8399999999999958322597-6864887 No 143 >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Probab=27.26 E-value=18 Score=12.43 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=21.3 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCC Q ss_conf 9999878997898785442265231577 Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 (495) Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~ 429 (495) +|-|.+=.+++.++++..+|.+|..+.. T Consensus 17 ~l~v~nLp~~~te~dL~~lF~~fG~I~~ 44 (104) T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICY 44 (104) T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEE T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCE T ss_conf 8999699999999999999998699737 No 144 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=27.23 E-value=18 Score=12.42 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=71.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE Q ss_conf 1999999999999999973112210003676-1010-4798999988777655688606798879999999769859999 Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 (495) Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~-~~~v-~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~ 404 (495) ++-..++.+...+...- +. .... ... ...+ .-++..+|-++.|-+-.. .|+.. |.|.|.+.. -++ .|+ T Consensus 263 ~l~~~~~~~~~~i~~~~--~~-~~~~--~g~~r~e~~~yP~~AiREal~NAl~HR-DY~~~-~~i~i~I~~-~~d--rle 332 (583) T 3lmm_A 263 SCLEQLDYLEQALNVVN--KN-NTVV--EGFVHKPVPEIPRLAVREAMLNAMIHR-DWNRS-EPIDVRWIE-LDS--TLI 332 (583) T ss_dssp CHHHHHHHHHHHHHHHS--CC-EEEE--ETTEEEEECSSCHHHHHHHHHHHHHHS-CSSSS-SCEEEEEET-TTT--EEE T ss_pred CHHHHHHHHHHHHHHHC--CC-CEEC--CCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCC-CCCEEEEEE-ECC--EEE T ss_conf 79999999999999856--56-3322--686265358895899999999999842-11015-991389999-789--899 Q ss_pred EEECC---CCCCHHHHH--------HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE-EEEEECCCCEEEEEEE Q ss_conf 98789---978987854--------42265231577767899988805899999999619859-9997989952988984 Q gi|254780701|r 405 IKDNG---PGIAEGEIP--------TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF-LIRSKLREGVEVIAIL 472 (495) Q Consensus 405 V~DtG---~GI~~e~~~--------~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i-~v~S~~G~Gt~f~v~L 472 (495) |..-| +||.++.+. .|-+-|++.+- .+..|-|..-..+..+..|..- ..++..+ ..+.++| T Consensus 333 i~nPG~l~~git~e~l~~~~~~RNp~La~~~~~l~~-----iE~~G~Gi~ri~~~~~~~g~~~P~~~~~~~--~~v~v~l 405 (583) T 3lmm_A 333 VRSPGGFPAAITSENVLSNRAARYPALADLYRALGL-----VDKQGVGVDRMYQAMIALGHRPPTIEEIAG--PFVETTL 405 (583) T ss_dssp EEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHTTC-----SCSSHHHHHHHHHHHHHTTCCCCEEEEETT--TEEEEEE T ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCC-----HHCCCCHHHHHHHHHHHCCCCCCCEEECCC--CEEEEEE T ss_conf 967987878758887258988877899999997180-----431395599999999975999991795589--8799998 Q ss_pred CH Q ss_conf 72 Q gi|254780701|r 473 PN 474 (495) Q Consensus 473 P~ 474 (495) |. T Consensus 406 ~~ 407 (583) T 3lmm_A 406 VG 407 (583) T ss_dssp EC T ss_pred EC T ss_conf 17 No 145 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=27.13 E-value=18 Score=12.41 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=9.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.-|+|+.-.|. T Consensus 248 ~~pedvA~~v~fL~S~~a~~i 268 (279) T 1xg5_A 248 LKPEDVAEAVIYVLSTPAHIQ 268 (279) T ss_dssp BCHHHHHHHHHHHHHSCTTEE T ss_pred CCHHHHHHHHHHHHCCHHCCE T ss_conf 299999999999968745481 No 146 >3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A* Probab=26.83 E-value=19 Score=12.37 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=9.1 Q ss_pred CCCHHHHHHHHHHHHHH Q ss_conf 47989999887776556 Q gi|254780701|r 362 WADEKGMRQVILNLLSN 378 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~N 378 (495) .++|.-+-+++.-|+|+ T Consensus 199 ~g~pedvA~~v~fL~s~ 215 (247) T 3dii_A 199 VGTPKDISNMVLFLCQQ 215 (247) T ss_dssp CBCHHHHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHHHHC T ss_conf 83999999999999808 No 147 >1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Probab=26.65 E-value=19 Score=12.35 Aligned_cols=53 Identities=25% Similarity=0.184 Sum_probs=32.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH Q ss_conf 047989999887776556886067988799999997698599999878997898785 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~ 417 (495) +.|||.|-+++- +++.|.-..+...+-....... +| ..|.|.-+|+|.|.... T Consensus 19 ~~Gdp~Ra~~ia-~~ld~~~~~~~~r~~~~ytG~~--~g-~~i~v~~~GiG~~~aa~ 71 (236) T 1je0_A 19 VVGDPGRARLLS-TLLQNPKLTNENRGFLVYTGKY--NG-ETVSIATHGIGGPSIAI 71 (236) T ss_dssp EESCHHHHHHHG-GGSEEEEEEECGGGCCEEEEEE--TT-EEEEEEECCSSHHHHHH T ss_pred ECCCHHHHHHHH-HHCCCCEEEECCCCEEEEEEEE--CC-EEEEEEECCCCHHHHHH T ss_conf 579979999999-9738877964148817999999--98-88999967848899999 No 148 >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=25.92 E-value=19 Score=12.25 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=38.8 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCE-EEEEEECCCCEEEEEEECH Q ss_conf 999987899789878544226523157776789998880----589999999961985-9999798995298898472 Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL----GLPIAQSIMANHGGQ-FLIRSKLREGVEVIAILPN 474 (495) Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL----GLaIvk~lve~hgG~-i~v~S~~G~Gt~f~v~LP~ 474 (495) .+-|..=..++.++++..+|++|..+....-....|.++ -..-+++.++.+.|. +.+ .|-...|.+-. T Consensus 17 ~l~v~nLp~~~te~~L~~~f~~~G~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~-----~g~~i~v~~s~ 89 (101) T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHL-----RNQPIYIQYSN 89 (101) T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEE-----TTEECEEEECS T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCEE-----CCEEEEEEECC T ss_conf 99994999999999999998754975256875269889999899999999999975998859-----99688999789 No 149 >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Probab=25.88 E-value=18 Score=12.55 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 798999988777655688606798879 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495) ++|.-+-.++.=|.|..-.|. .|..| T Consensus 219 g~pedvA~~v~fL~S~~s~~i-TG~~i 244 (255) T 1fmc_A 219 GQPQDIANAALFLCSPAASWV-SGQIL 244 (255) T ss_dssp BCHHHHHHHHHHHHSGGGTTC-CSCEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEE T ss_conf 399999999999958422597-68779 No 150 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=25.88 E-value=19 Score=12.24 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=19.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|..-+|. .|..|.| T Consensus 219 ~~~pediA~~v~fL~S~~a~~i-TG~~i~V 247 (256) T 3gaf_A 219 LGEAQDIANAALFLCSPAAAWI-SGQVLTV 247 (256) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999958322697-6876998 No 151 >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Probab=25.69 E-value=18 Score=12.50 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=15.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .+|..+...+..|++..-+|. .|+.|.| T Consensus 200 ~~pe~va~~i~~l~s~~~~~v-tG~~i~v 227 (241) T 1dhr_A 200 TPLEFLVETFHDWITGNKRPN-SGSLIQV 227 (241) T ss_dssp EEHHHHHHHHHHHHTTTTCCC-TTCEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCC-CCCEEEE T ss_conf 999999999999958886678-7776999 No 152 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=25.67 E-value=19 Score=12.21 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=16.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|..-+|. .|..|.| T Consensus 231 ~~~pediA~~v~fL~Sd~s~~i-TG~~i~V 259 (266) T 3grp_A 231 MGIGEEIAFATVYLASDEAAYL-TGQTLHI 259 (266) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 9699999999999957122597-6865997 No 153 >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Probab=25.51 E-value=20 Score=12.19 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHCCCCCEEC Q ss_conf 99999999997311221000 Q gi|254780701|r 334 ECIIMLQLRAQEKNIEIFQK 353 (495) Q Consensus 334 ~~~~~~~~~A~~~~~~l~~~ 353 (495) ...+.+...-..+|+++..- T Consensus 173 ~lt~~LA~E~~~~gIrVN~I 192 (319) T 1gz6_A 173 GLANTLVIEGRKNNIHCNTI 192 (319) T ss_dssp HHHHHHHHHTGGGTEEEEEE T ss_pred HHHHHHHHHHCCCCEEEEEE T ss_conf 72999999967369799998 No 154 >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii RH} PDB: 2o50_A 3nj8_A* Probab=25.39 E-value=20 Score=12.17 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=14.3 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 7989999887776556886067988799 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) ++|.-+-.++.=|+|+.-.|. .|..|. T Consensus 261 g~pedvA~~v~fL~Sd~s~~i-TG~~i~ 287 (315) T 2o2s_A 261 LHSDDVGGAALFLLSPLARAV-SGVTLY 287 (315) T ss_dssp CCHHHHHHHHHHHTSGGGTTC-CSCEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEE T ss_conf 799999999999957143795-685788 No 155 >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Probab=24.97 E-value=20 Score=12.11 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) +.|.-+-+.+.=|.|..-+|. T Consensus 215 g~pedvA~~v~fL~S~~s~~i 235 (249) T 2ew8_A 215 QVPLDLTGAAAFLASDDASFI 235 (249) T ss_dssp CCTHHHHHHHHHHTSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 899999999999958232697 No 156 >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=24.90 E-value=20 Score=12.11 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=26.7 Q ss_pred EEEEEEECCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999878997-89878544226523157776789998880 Q gi|254780701|r 401 QYISIKDNGPG-IAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 (495) Q Consensus 401 ~~i~V~DtG~G-I~~e~~~~iF~~F~r~~~~~~~~~~GtGL 440 (495) .+|-|.+=-.+ ..++++..+|++|..+.+-.--...|.++ T Consensus 16 r~l~V~nl~~~~~t~~eL~~lF~~fG~I~~v~~~~~k~~af 56 (102) T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAF 56 (102) T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEE T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCEEEE T ss_conf 78999899987678999999986657668999834650899 No 157 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=24.65 E-value=20 Score=12.07 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=17.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|+.-+|. .|..|.| T Consensus 215 ~g~pedvA~~v~fL~S~~s~~i-tG~~i~V 243 (250) T 2cfc_A 215 IGTAAQVADAVMFLAGEDATYV-NGAALVM 243 (250) T ss_dssp CBCHHHHHHHHHHHHSTTCTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 9499999999999958043695-6834666 No 158 >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Probab=24.47 E-value=20 Score=12.04 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=17.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-+++.=|+|..-+|. .|..|.| T Consensus 213 ~~~p~diA~~v~fL~S~~s~~i-tG~~i~V 241 (256) T 2d1y_A 213 LGKPEEVAEAVLFLASEKASFI-TGAILPV 241 (256) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8399999999999968422496-6877883 No 159 >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Probab=24.30 E-value=20 Score=12.14 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=14.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 4798999988777655688606798879 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495) .++|.-+-.++.-|+|+.-+|. .|..| T Consensus 234 ~g~pedvA~~v~fL~S~~a~~i-TG~~i 260 (269) T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGFV-TGADL 260 (269) T ss_dssp CBCHHHHHHHHHHHTSTTCTTC-CSCEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEE T ss_conf 9899999999999948122697-68648 No 160 >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Probab=24.23 E-value=21 Score=12.01 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=22.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 0479899998877765568860679887999 Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) -.++|.-+-.++.-|.|++-+|. .|..|.| T Consensus 219 R~~~peevA~~v~fL~S~~a~~i-TG~~i~v 248 (255) T 2q2v_A 219 AFVTPEHLGELVLFLCSEAGSQV-RGAAWNV 248 (255) T ss_dssp CCBCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 98399999999999948132697-6866998 No 161 >1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=24.21 E-value=21 Score=12.01 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=17.0 Q ss_pred CCCHHHHHHHHHHHHH-HHHHCCCCCCEEEE Q ss_conf 4798999988777655-68860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLS-NAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~-NAiK~T~~gG~V~v 391 (495) .++|.-+-+++.-|.| ++-.|. .|..|.| T Consensus 247 ~g~pediA~~v~fL~S~d~s~~i-TGq~i~V 276 (297) T 1xhl_A 247 CGKPEEIANIIVFLADRNLSSYI-IGQSIVA 276 (297) T ss_dssp CBCHHHHHHHHHHHHCHHHHTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHCCCCHHCCC-CCCEEEE T ss_conf 80999999999998099520684-0876886 No 162 >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Probab=23.97 E-value=21 Score=11.97 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=17.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.-|.|++-+|. .|..|.| T Consensus 282 ~~pedvA~~v~fL~Sd~a~~i-TG~~i~V 309 (317) T 3oec_A 282 VEPEDVSNAVAWLASDEARYI-HGAAIPV 309 (317) T ss_dssp BCHHHHHHHHHHHTSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCHHHCCC-CCCEEEE T ss_conf 899999999999957043696-6876888 No 163 >3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A Probab=23.88 E-value=21 Score=11.96 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=9.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-..+.=|+|+.-+|. T Consensus 225 ~~peeiA~~v~fL~s~~s~~i 245 (260) T 3gr6_A 225 VDQVEVGKTAAYLLSDLSSGV 245 (260) T ss_dssp CCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 799999999999958322794 No 164 >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Probab=23.68 E-value=21 Score=11.93 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|+.-.|. .|..|.| T Consensus 213 ~~~pedvA~~v~fL~S~~a~~i-tG~~i~v 241 (247) T 2hq1_A 213 FGTPEEVANVVGFLASDDSNYI-TGQVINI 241 (247) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8699999999999958311697-6886996 No 165 >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Probab=23.62 E-value=21 Score=11.92 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=8.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|+|.+-.|. T Consensus 223 ~~pedvA~~v~fL~S~~s~~i 243 (261) T 3n74_A 223 LKPDDLAEAAAFLCSPQASMI 243 (261) T ss_dssp CCHHHHHHHHHHHTSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 199999999999958412697 No 166 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Probab=23.61 E-value=0.18 Score=29.75 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=35.4 Q ss_pred EEEEECCCCCCH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC Q ss_conf 999878997898-78544226523157776789998880589999999961985999979899529889847 Q gi|254780701|r 403 ISIKDNGPGIAE-GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495) Q Consensus 403 i~V~DtG~GI~~-e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495) ..++|+|.||+. +.....|+.|...+.......+|.|++.. ...|.| +.+++.+|.+..+++.++ T Consensus 29 ~~L~~~G~~v~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (254) T 2ayx_A 29 TSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTF-----CRRHIG-IPLEKAPGEWVHSVAAPH 94 (254) T ss_dssp HHHTTTTEEEEECSSCCCCTTCEEEEESSCSCCCCSSEEEEE-----CSSCCC-SCCTTSTTEEEECSSCCS T ss_pred HHHHHCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHH-----HHHHCC-CCHHHCCCCEECCEEEHH T ss_conf 999977998983444677889779855876655461069999-----988468-512212464020221143 No 167 >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* 1nhw_A* 1nhg_A* 1nnu_A* ... Probab=23.53 E-value=21 Score=11.91 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=16.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.=|.|+.-+|. .|..|.| T Consensus 291 ~~pedvA~~v~fL~Sd~s~~i-TG~~i~V 318 (329) T 3lt0_A 291 LLSTDIGSVASFLLSRESRAI-TGQTIYV 318 (329) T ss_dssp CCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 699999999999848053791-6875898 No 168 >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Probab=23.48 E-value=21 Score=11.90 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|..-+|. .|..|.| T Consensus 214 ~~~pediA~~v~fL~S~~a~~i-tGq~i~v 242 (264) T 2dtx_A 214 IGKPQEVASAVAFLASREASFI-TGTCLYV 242 (264) T ss_dssp CBCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999958432591-6863798 No 169 >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=23.47 E-value=21 Score=11.90 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=17.8 Q ss_pred CCCHHHHHHHHHHHHHH-HHHCCCCCCEEEE Q ss_conf 47989999887776556-8860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSN-AVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~N-AiK~T~~gG~V~v 391 (495) .++|.-+-.++.-|.|+ +-.|. .|..|.| T Consensus 229 ~g~pedvA~~v~fL~S~~~a~~i-tG~~i~V 258 (278) T 1spx_A 229 MGQPQDIAEVIAFLADRKTSSYI-IGHQLVV 258 (278) T ss_dssp CBCHHHHHHHHHHHHCHHHHTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCCCE-ECCEEEE T ss_conf 86999999999999198401882-3817886 No 170 >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} Probab=23.33 E-value=21 Score=11.88 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=17.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|+|++-+|. .|..|.| T Consensus 243 ~g~peevA~~v~fL~Sd~a~~i-TG~~i~V 271 (293) T 3grk_A 243 TVTIDEVGDVGLYFLSDLSRSV-TGEVHHA 271 (293) T ss_dssp CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8299999999999957243590-6765887 No 171 >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Probab=23.16 E-value=21 Score=11.85 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=19.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 9899998877765568860679887999 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) +|.-+-.++.-|+|+.-+|. .|..|.| T Consensus 212 ~PedvA~~v~fL~S~~a~~i-tG~~i~V 238 (254) T 1hdc_A 212 EPGEIAGAVVKLLSDTSSYV-TGAELAV 238 (254) T ss_dssp CHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 99999999999957222697-7876887 No 172 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short- chain oxidoreductase, tetramer; 2.00A {Escherichia coli} Probab=23.04 E-value=22 Score=11.84 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=19.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-+++.=|.|++-+|. .|..|.| T Consensus 214 ~g~pedvA~~v~fL~S~~a~~i-tG~~i~V 242 (250) T 2fwm_X 214 IARPQEIANTILFLASDLASHI-TLQDIVV 242 (250) T ss_dssp --CHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCEEEEE T ss_conf 8399999999999968323596-1557888 No 173 >3i1j_A Oxidoreductase, short chain dehydrogenase/reductase family; dimer, mixed alpha-beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Probab=22.99 E-value=22 Score=11.83 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=3.7 Q ss_pred CCHHHHHHHH Q ss_conf 7989999887 Q gi|254780701|r 363 ADEKGMRQVI 372 (495) Q Consensus 363 ~D~~~L~qvl 372 (495) .|+...++++ T Consensus 114 ~~~~~~~~~~ 123 (247) T 3i1j_A 114 LPDEDFMQVM 123 (247) T ss_dssp SCHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 9999999999 No 174 >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=22.91 E-value=15 Score=13.14 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=37.0 Q ss_pred EEEEE--CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 99987--8997898785442265231577767899988805----899999999619859999798995298898 Q gi|254780701|r 403 ISIKD--NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG----LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 (495) Q Consensus 403 i~V~D--tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG----LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~ 471 (495) +-|.. =..+|.++++..+|++|..+..-.--..+|.+.= -.-+++-++.|+|..-. ++.|-...+. T Consensus 28 l~V~nggL~~~~te~~L~~~F~~~G~i~~v~~~~~k~~aFV~f~~~~~A~~A~~~lng~~i~---~~~~~~~~l~ 99 (114) T 2cq2_A 28 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV---DDLGQKITLY 99 (114) T ss_dssp EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEE---CTTSCEEECE T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCC---CCCCCEEEEE T ss_conf 99993898999889999999985299279999568988999988999999999983898957---8899567899 No 175 >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A* Probab=22.88 E-value=22 Score=11.81 Aligned_cols=29 Identities=31% Similarity=0.255 Sum_probs=17.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 479899998877765568860679887999 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .++|.-+-.++.=|.|+.-+|. .|..|.| T Consensus 242 ~g~pedvA~~v~fL~Sd~s~~i-TG~~i~V 270 (296) T 3k31_A 242 NTTLDDVGGAALYLLSDLGRGT-TGETVHV 270 (296) T ss_dssp CCCHHHHHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CCCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 8699999999999957043692-5885788 No 176 >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Probab=22.78 E-value=22 Score=11.80 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=11.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 798999988777655688606798879 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRV 389 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V 389 (495) +.|.-+-.++.=|+|..-+|. .|..| T Consensus 215 ~~pedvA~~v~fL~S~~a~~i-tG~~i 240 (252) T 3f1l_A 215 KTPADIMPLYLWLMGDDSRRK-TGMTF 240 (252) T ss_dssp BCTGGGHHHHHHHHSGGGTTC-CSCEE T ss_pred CCHHHHHHHHHHHHCHHHCCC-CCCEE T ss_conf 999999999999948132587-78789 No 177 >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Probab=22.46 E-value=22 Score=11.75 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=54.5 Q ss_pred CCCCHHHHHHHHHHHHHHHH-HCCCCC-------CEEEEEEEEECCCEE-EEEEEECCCCCCHHHHHHHCCCCCCC---- Q ss_conf 04798999988777655688-606798-------879999999769859-99998789978987854422652315---- Q gi|254780701|r 361 VWADEKGMRQVILNLLSNAV-KFTAIG-------GRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQG---- 427 (495) Q Consensus 361 v~~D~~~L~qvl~NLi~NAi-K~T~~g-------G~V~v~~~~~~~~~~-~i~V~DtG~GI~~e~~~~iF~~F~r~---- 427 (495) ...||..|+|++. |+.+|= |-||.+ -...+.+-..++..+ .+.|.+.| |++++-.+.|..-..|. T Consensus 359 l~~~~~~L~~~f~-LLv~AHYrtsP~DL~~LlDaP~~~~~~~~~~~~vvg~~~v~~EG-~l~~~l~~~i~~G~rRp~G~L 436 (671) T 2zpa_A 359 WQSDPETPLKVYQ-LLSGAHYRTSPLDLRRMMDAPGQHFLQAAGENEIAGALWLVDEG-GLSQQLSQAVWAGFRRPRGNL 436 (671) T ss_dssp HHHCTHHHHHHHH-HHHHHSSSBCHHHHHHHHHCTTEEEEEEECSSSEEEEEEEEEEE-CCCHHHHHHHHHTSCCCSSCH T ss_pred HHCCHHHHHHHHH-HHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECC-CCCHHHHHHHHHCCCCCCCCC T ss_conf 4239999999999-99988616985789985368665476532798449999997358-999999999984788899887 Q ss_pred -----------------CC------CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE Q ss_conf -----------------77------7678999888058999999996198599997989952988984 Q gi|254780701|r 428 -----------------SI------AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 (495) Q Consensus 428 -----------------~~------~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~L 472 (495) .. +..-...+-|+|-...+.+.+...| +.. -||.|-.+- T Consensus 437 ipq~La~h~~~~~a~~l~~~RIvRIAvhP~~q~~GiGs~lL~~~~~~a~~-~D~-----lg~SFG~t~ 498 (671) T 2zpa_A 437 VAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTQD-LDY-----LSVSFGYTG 498 (671) T ss_dssp HHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHHHHHTCCS-CSE-----EEEEEECCH T ss_pred HHHHHHHHHCCHHHHHHCCEEEEEEEECHHHHCCCHHHHHHHHHHHHHCC-CCE-----EEECCCCCH T ss_conf 69999997386766644111478888477555368799999999987358-887-----974537977 No 178 >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=22.07 E-value=19 Score=12.39 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=39.9 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH Q ss_conf 999987899789878544226523157776789998880----5899999999619859999798995298898472 Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL----GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495) Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL----GLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495) .|-|. |..+.++++..+|++|..+..-......|.|. -..-+++-++.++|..- .|....|.+-. T Consensus 17 ~i~V~--~l~~te~~L~~~F~~fG~I~~v~~~~~~g~afV~f~~~~~A~~Ai~~~n~~~~------~g~~i~v~~a~ 85 (97) T 1x5p_A 17 TLYVY--GEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV------ESVQLKVNIAR 85 (97) T ss_dssp EEEEE--CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE------TTEEEEEECCS T ss_pred EEEEE--CCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCEE------CCEEEEEEECC T ss_conf 99995--88699999999997279778800226899799998978999999998499989------99898999737 No 179 >2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, protein structure initiative; 2.90A {Pyrococcus furiosus} Probab=21.94 E-value=23 Score=11.67 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 999999999850336878937899999999999999 Q gi|254780701|r 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 (495) Q Consensus 265 ~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~ 300 (495) .+|.||+|-+....-...+++...+.++.|...-.. T Consensus 50 vsIlGFlEGiLttLK~Ky~deri~~Lle~Vr~~R~e 85 (103) T 2hjm_A 50 ASIYGFLEGILTTLKMKYSNEKIETLLNEVKTAREE 85 (103) T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 889999999999999857837799999999999999 No 180 >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Probab=21.83 E-value=18 Score=12.50 Aligned_cols=20 Identities=5% Similarity=-0.090 Sum_probs=11.4 Q ss_pred HHHHHHHHHHCCCE-EEEEEE Q ss_conf 89999999961985-999979 Q gi|254780701|r 442 LPIAQSIMANHGGQ-FLIRSK 461 (495) Q Consensus 442 LaIvk~lve~hgG~-i~v~S~ 461 (495) ..++|.++...+.. |.|-+. T Consensus 169 ~~ltk~lA~el~~~gIrVN~V 189 (262) T 3ksu_A 169 EHYTRAASKELMKQQISVNAI 189 (262) T ss_dssp HHHHHHHHHHTTTTTCEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEEE T ss_conf 999999999967159199999 No 181 >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomics; HET: ADN; 1.40A {Thermus thermophilus HB8} SCOP: c.2.1.2 Probab=21.76 E-value=23 Score=11.64 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=14.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 47989999887776556886067988799 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495) .++|.-+-.++.-|.|+ .|. .|..|. T Consensus 207 ~g~pedvA~~v~fL~s~--~~i-tG~~i~ 232 (242) T 1uay_A 207 LGRPEEYAALVLHILEN--PML-NGEVVR 232 (242) T ss_dssp CCCHHHHHHHHHHHHHC--TTC-CSCEEE T ss_pred CCCHHHHHHHHHHHHHC--CCC-CCCEEE T ss_conf 83999999999999818--999-999887 No 182 >3ojf_A Enoyl-[acyl-carrier-protein] reductase (FABL) (Na; enoyl-ACP reductase, tetramer, rossmann fold, NAD(P) binding oxidoreductase; HET: IMJ NDP; 2.20A {Bacillus cereus} PDB: 2qio_A* 3oje_A Probab=21.73 E-value=23 Score=11.64 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=7.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 798999988777655688606 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFT 383 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T 383 (495) ++|.-+-.++.=|+|..-+|. T Consensus 221 g~pedvA~~v~fL~S~~s~~i 241 (257) T 3ojf_A 221 TTQEEVGDTAVFLFSDLARGV 241 (257) T ss_dssp CCHHHHHHHHHHHHSGGGTTC T ss_pred CCHHHHHHHHHHHHCCHHCCC T ss_conf 499999999999957243693 No 183 >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 2jjy_A* Probab=21.58 E-value=23 Score=11.62 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=13.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 79899998877765568860679887999 Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) ++|.-+-.++.=|.|+.-+|. .|..|.| T Consensus 240 ~~pedvA~~v~fL~S~~s~~i-tG~~i~V 267 (280) T 3nrc_A 240 VDIMEVGNTVAFLCSDMATGI-TGEVVHV 267 (280) T ss_dssp CCHHHHHHHHHHTTSGGGTTC-CSCEEEE T ss_pred CCHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 599999999999958322694-6845787 No 184 >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=21.53 E-value=23 Score=11.61 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.0 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 99998789978987854422652315777678999888 Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 (495) Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtG 439 (495) +|-|..=...+.++++..+|.+|..+..-.-....|.| T Consensus 33 ~l~v~nLp~~~te~~L~~~F~~fG~v~~v~~~~~k~~a 70 (119) T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQA 70 (119) T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEE T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEE T ss_conf 99996999999999999999876975521422358779 No 185 >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Probab=21.53 E-value=23 Score=11.61 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=26.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH Q ss_conf 47989999887776556886067988799999997698599999878997898 Q gi|254780701|r 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 (495) Q Consensus 362 ~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~ 414 (495) .++|.-+-.++.=|.|..-.|. .|..|.| ++|. ++...-||.|+ T Consensus 211 ~g~pedvA~~v~fL~S~~a~~i-TG~~i~V-----dGG~---~~~~~~p~~p~ 254 (254) T 1zmt_A 211 LGTQKELGELVAFLASGSCDYL-TGQVFWL-----AGGF---PMIERWPGMPE 254 (254) T ss_dssp CBCHHHHHHHHHHHHTTSCGGG-TTCEEEE-----STTC---CCCCCCTTCC- T ss_pred CCCHHHHHHHHHHHHCCCCCCC-CCCEEEE-----CCCC---EECCCCCCCCC T ss_conf 8499999999999968601586-6864897-----9790---74999985688 No 186 >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reductase; structural genomics, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Probab=21.26 E-value=23 Score=11.57 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCC---CCHHCCCCHHHHHHHHH-HHH Q ss_conf 99999999999999997311221000367---61010479899998877-765 Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP---SLSSVWADEKGMRQVIL-NLL 376 (495) Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~---~~~~v~~D~~~L~qvl~-NLi 376 (495) +..+++.+.+.+........+.+.+.... ..+.-..|+....+++. ||. T Consensus 72 v~~~~~~~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~vNl~ 124 (255) T 3icc_A 72 VEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK 124 (255) T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTH T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 99999999999865326898638998999999998134999999999998719 No 187 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=21.03 E-value=23 Score=11.53 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=12.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 9899998877765568860679887999 Q gi|254780701|r 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV 391 (495) Q Consensus 364 D~~~L~qvl~NLi~NAiK~T~~gG~V~v 391 (495) .|.-+-.++.=|.|++-.|. .|..|.| T Consensus 234 ~pediA~~v~fL~S~~a~~i-tG~~i~v 260 (267) T 1vl8_A 234 VPEDLKGVAVFLASEEAKYV-TGQIIFV 260 (267) T ss_dssp CGGGGHHHHHHHHSGGGTTC-CSCEEEE T ss_pred CHHHHHHHHHHHHCCHHCCC-CCCEEEE T ss_conf 99999999999957422696-6876987 No 188 >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier- protein) reductase, oxidoreductase; 2.60A {Eimeria tenella str} Probab=21.02 E-value=23 Score=11.53 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=47.7 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCC---C--CCHHCCCCHHHHHHHHH-------HHHHHHHHCCCCCCEEEEEEE Q ss_conf 19999999999999999731122100036---7--61010479899998877-------765568860679887999999 Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID---P--SLSSVWADEKGMRQVIL-------NLLSNAVKFTAIGGRVHVTVG 394 (495) Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~---~--~~~~v~~D~~~L~qvl~-------NLi~NAiK~T~~gG~V~v~~~ 394 (495) ....+++.+.+.| .++.+.+... + ..|....++....+++. ++..-++++..++|.+.+ T Consensus 119 ~~~~~~~~~~~~~------G~iDiLVnnag~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~m~~~g~~i~--- 189 (319) T 2ptg_A 119 TISEVAEAVRADV------GQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALA--- 189 (319) T ss_dssp SHHHHHHHHHHHH------SCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE--- T ss_pred HHHHHHHHHHHHH------CCCCEEEECCCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE--- T ss_conf 9999999999983------9987899778747778999266999999999987266999999987354213674699--- Q ss_pred EECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE Q ss_conf 9769859999987899789878544226523157776789998880589999999961985999979 Q gi|254780701|r 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 (495) Q Consensus 395 ~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~ 461 (495) +...-...+.++.. ..|- ..+....+|--.+++.+.+.+|-++..-+- T Consensus 190 --------i~~~s~~~~~~~~~------~~y~-----~sKaa~~~l~~~la~e~~~~~~irvn~i~P 237 (319) T 2ptg_A 190 --------LSYIASEKVIPGYG------GGMS-----SAKAALESDCRTLAFEAGRARAVRVNCISA 237 (319) T ss_dssp --------EEECC-----------------------------THHHHHHHHHHHHHHHCCEEEEEEE T ss_pred --------EEEEHHHCCCCCCC------CHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf --------99713301778742------0357-----888999999999999997650875102577 No 189 >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Probab=20.60 E-value=19 Score=12.35 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=40.0 Q ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH Q ss_conf 9999878997898785442265231577767899988805----8999999996198599997989952988984724 Q gi|254780701|r 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG----LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495) Q Consensus 402 ~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLG----LaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495) ++-|++=.+.+.++++..+|++|..+..-.-...+|.|.= -.-+.+-++.++|..- .|.+..+.++.. T Consensus 9 ~l~v~NL~~~vt~~~L~~lf~~~G~i~~~~~~~~~g~afV~f~~~~~A~~A~~~lng~~l------~~~~i~v~~a~~ 80 (89) T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL------ANTTIFAESPSE 80 (89) T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEE------TTEEEEEECCCH T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEE------CCEEEEEEECCH T ss_conf 899979999899999999999859956442289997899998999999999998688997------994899997898 No 190 >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=20.48 E-value=20 Score=12.11 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=23.3 Q ss_pred EEEEEECCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 999987899-789878544226523157776789998880 Q gi|254780701|r 402 YISIKDNGP-GIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 (495) Q Consensus 402 ~i~V~DtG~-GI~~e~~~~iF~~F~r~~~~~~~~~~GtGL 440 (495) .|-|..==. ++.++++..+|++|.++.+..-....|.|+ T Consensus 27 ~l~V~nLP~~~~te~~l~~~F~~fG~v~~~~~~~~k~~af 66 (112) T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAF 66 (112) T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE T ss_conf 8998499977679999999999739862688860477799 Done!