BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] (495 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 495/495 (100%), Positives = 495/495 (100%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA Sbjct: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC Sbjct: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM Sbjct: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK Sbjct: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH Sbjct: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS Sbjct: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF Sbjct: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 Query: 481 IPEDNHESTQYKCYA 495 IPEDNHESTQYKCYA Sbjct: 481 IPEDNHESTQYKCYA 495 >gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] Length = 518 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 205/479 (42%), Positives = 283/479 (59%) Query: 5 RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64 R + +++ ++ LG FD E L ++ + +PL L+VA I Sbjct: 19 RAKRRREMARSVNDVRSRLGAPENWYTSFDLERQHLFADTRINAAYAVPLLALIVAAISV 78 Query: 65 WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 + W +TL + + + WR G G W Sbjct: 79 LWINPIFIGAWFAVTLCTHFMMVITSHSYEKAPSDQKARIYWRRRFAFGDFIYGCSWASF 138 Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L+ + + + I+ ATLLI ++++ + + LP + S P+ + ++ + + Sbjct: 139 FLLPQTSESGDGFVIFHFATLLIVVAMNTMQSATLPKCLLASTLPMTLIVTVSFLQQVTP 198 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + +LA M A FF + L K+ +L +A+KD LI ELE A ++SDE R+RAE Sbjct: 199 IHYTLAAMAIGAQGFFLILGNQLLKNANTMLEYRADKDHLIVELESANAMSDEARRRAEA 258 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 NLAKSRFLA+MSHELRTPLNAILGFSE+++ E +G ++N+ Y+ Y DIH SGQHLLNL Sbjct: 259 ANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGKMHNKNYQSYAEDIHGSGQHLLNL 318 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 INEILDLSRIEAGR+EL E I L DIV EC M+++RA+ K I + +P L VWAD Sbjct: 319 INEILDLSRIEAGRHELHEEPIFLDDIVEECGTMMKVRAKAKTISLHHTHEPDLPRVWAD 378 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 E+ +RQV+LNLLSNAVKFT + G V + VG TS GQY+SIKD GPGI E EIPTVL +F Sbjct: 379 ERALRQVVLNLLSNAVKFTPVNGEVWIKVGPTSDGGQYVSIKDTGPGIPEDEIPTVLEAF 438 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 GQGS AIK+AE G GLGL I Q+++ H G+F ++SK EG EVI LP R++N+ P+ Sbjct: 439 GQGSHAIKTAEPGTGLGLSIVQALVNMHDGKFSLKSKPGEGTEVIVTLPRARIMNYSPD 497 >gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 516 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 208/477 (43%), Positives = 287/477 (60%), Gaps = 3/477 (0%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77 LG F+ E L ++ + +PL VL+V I + W + Sbjct: 32 NVRSRLGTSDRQHSTFELERQHLFADTRINAAFAVPLLVLIVTAISVIWLNPFFLGAWLI 91 Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 +TL + + + WR +G + G W + L+ + Sbjct: 92 VTLCTHLLMVVTCHSYERAPSDQKARIYWRRRFTLGDLLYGCSWAVFFLLPRSDNAGDGF 151 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I+ ATLLI ++++ + + LP + S P+ + ++ + + + +LA M A Sbjct: 152 VIFHFATLLIVVAMNTMQSATLPRCLLASTLPMTLIVTASFLQQIDPIHYTLAAMAIGAQ 211 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 FF + L K+ +L +AEKD LIAELE A ++SDE R+RAE N+AKSRFLA+MS Sbjct: 212 GFFFILGNQLLKNANTMLEYRAEKDHLIAELETANAMSDEARRRAEAANVAKSRFLATMS 271 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAILGFSE+++ E +GP+ N+TYK Y DIH SGQHLLNLINEILDLSRIEAG Sbjct: 272 HELRTPLNAILGFSEIMKDEVLGPMKNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAG 331 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 R+EL E ++ L ++V EC M+ +RA KNI + ++P + VWADE+ +RQV+LNL+S Sbjct: 332 RHELQEESLYLEEVVDECGSMMTVRANAKNIMLHHTLEPDMPRVWADERALRQVVLNLIS 391 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT +GG VH+ VG TS GQY+SI D GPGI E EIPTVL +FGQGS AIKSAE G Sbjct: 392 NAVKFTPVGGEVHIKVGRTSDDGQYVSITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPG 451 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE---DNHESTQY 491 GLGL I Q+++ H G+F+I+S+L G E I LP RV+N+ P+ + EST + Sbjct: 452 TGLGLSIVQALVGMHDGKFVIKSQLGVGTEAIMSLPRARVMNYSPDVVWADTESTDF 508 >gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] Length = 512 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 214/464 (46%), Positives = 294/464 (63%) Query: 15 LISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74 + HLG P+ F E + L ++ + +P+ L++A I T + Q + Sbjct: 33 TLKNVKLHLGAPDPTAAQFQIERLHLFADTRISAAYAVPMLALIIAGISTLWIQPIHVAI 92 Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W IT+ ++A + + + W +G G CW L+ Sbjct: 93 WCSITIGMHAFMVFTCSSYERASSEDRARSRWLPRFTLGDFVYGACWASFFLLPHSAAAT 152 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +++ A +LI ++++ + +P A+ S P+ +A+S + + +LA M Sbjct: 153 DGFMVFQFAAMLIVVAMNTMQAATIPRALMASTLPITIAISASFLQQPSPIHYTLAAMAI 212 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 A FF + L K+ IL +AEKD LI+ELE A +LSDE+R+RAE N+AKSRFLA Sbjct: 213 GAQGFFLILGNQLIKNANMILEYRAEKDHLISELETANALSDESRRRAEAANMAKSRFLA 272 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAILGFSEV++ E +GP+ NE YK Y DIH SGQHLLNLINEILDLSRI Sbjct: 273 TMSHELRTPLNAILGFSEVMKDEVLGPMQNEQYKSYAADIHGSGQHLLNLINEILDLSRI 332 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGR+EL E IS+ +IV EC+ M+Q+RA ++NI + ++ + VWADE+ +RQV+LN Sbjct: 333 EAGRHELQEEEISVTEIVEECLNMMQIRADDRNITLHNHLEKEMPKVWADERAVRQVVLN 392 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT IGG V +TVGWTSG GQY+S+KDNGPGI E EIP V+ +FGQGS+AIKSA Sbjct: 393 LLSNAVKFTPIGGDVRITVGWTSGGGQYVSVKDNGPGIPEDEIPVVMEAFGQGSMAIKSA 452 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 EQG GLGL I Q+++ HGG+F +RSK+ EG E + LP +RVL Sbjct: 453 EQGTGLGLSIVQALVNMHGGKFTLRSKMHEGTEALMTLPASRVL 496 >gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 511 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 263/496 (53%), Positives = 345/496 (69%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 +SR ++ K V + T L + FDRE++ LH++++ + LPL V L++ I Sbjct: 16 KSRNHRNKAVSKAVRATRQRLQTGSSAPAGFDREMLLLHIDAVLHGAIALPLLVGLISAI 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + ++ P +W L+ L+ +A + L +K +I +V +WR L Q+ +GLCW Sbjct: 76 GVYLSEEPGILLWGLMALSAHAVTVYLARKAKQQNIGAEKVAIWRRRFLASQLLMGLCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L + G +++ L IAL+ +A+ F+L A+ +F PVV AL ++ + Sbjct: 136 IFALQDCGACGEIQFALFEGTGLFIALAATAMGTFLLRNALVYTFLPVVGALGFSSLTTG 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + + L G+L+ +L F ++T + K+NV ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DPIHVGLTGILSLSLVFLAFMTERMNKANVHILSMQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GPLNN TYKEY DIHRSG+HLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLNNPTYKEYTVDIHRSGEHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAGRYEL+E A++L++I +CI M+QLRA+ KNI I + + ++ SVW Sbjct: 316 NLINEILDLSRIEAGRYELNEEAVNLVEIAEDCIGMVQLRARGKNITIEPQFEQAMPSVW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DEK MRQV LNLLSNAVKFT GG + V VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 IDEKAMRQVALNLLSNAVKFTPAGGEITVKVGWTAGGGQYISIKDNGPGIPEEEIPIVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF++RSKLREG E IAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLREGTEAIAILPPRRVLQSLP 495 Query: 483 ---EDNHESTQYKCYA 495 + + + K +A Sbjct: 496 PVEDAPSPARRRKSFA 511 >gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 511 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 289/496 (58%), Positives = 363/496 (73%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ +++ S+ + + I+PLFV+++ + Sbjct: 16 RSRSHRNKAVSKAVRQTRERLQSGHASNSTFDRDVLKMYIASMLQGATIMPLFVVIITAL 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +FTQ+ W+L+TL+ + N+ L ++ +I WR LL GQ +G CW Sbjct: 76 GVYFTQDTRLLFWALMTLSCHTGNILLARRARRQEITAESARKWRRLLLSGQFLVGCCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV ++F P V+AL ++ +S Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL G+ T L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495 Query: 483 ---EDNHESTQYKCYA 495 E + + K +A Sbjct: 496 AVEEAQAVARKRKSFA 511 >gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 511 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 289/496 (58%), Positives = 362/496 (72%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ +++ S+ + + I+PLFV+++ + Sbjct: 16 RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYIASMLQGATIMPLFVVIITAL 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +FTQ+ W+L+TL + N+ L ++ +I WR LL GQ +G CW Sbjct: 76 GVYFTQDTRLLFWALLTLTCHTGNILLARRARRQEITSESARKWRRLLLSGQFLVGCCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV ++F P V+AL ++ +S Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL G+ T L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495 Query: 483 ---EDNHESTQYKCYA 495 E + + K +A Sbjct: 496 AVEEAQAVARKRKSFA 511 >gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 511 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 291/496 (58%), Positives = 364/496 (73%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ ++V S+ + + I+PLFV+++ + Sbjct: 16 RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLDMYVASVLQGATIMPLFVVIITAL 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +FT++ W+L+TL +A N+ L ++ +I WR LL GQ IG CW Sbjct: 76 GVYFTEDTQLIFWALLTLTCHAGNILLARRARRQEITAESARKWRRLLLSGQFLIGCCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV +F P V+AL+ ++ +S Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLAAFSPAVLALAAKSGLSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL G++ T L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DLLEISLTGLVTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPIVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495 Query: 483 ---EDNHESTQYKCYA 495 E + + K +A Sbjct: 496 AVEEAQAVARKRKSFA 511 >gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 289/496 (58%), Positives = 364/496 (73%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ +++ S+ + + I+PLFV+++ + Sbjct: 18 RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYIASMLQGATIMPLFVVIITAL 77 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +FTQ+ W+L+TL +A N+ L ++ + +I WR LL+GQ +G CW Sbjct: 78 GVYFTQDTRLLFWALLTLTCHAGNILLARRARHQEITSESAGKWRRLLLLGQFLVGCCWA 137 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV ++F P V+AL ++ +S Sbjct: 138 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAVLALGAKSGLSR 197 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL + T L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 198 DLLEISLTALFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 257 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 258 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 317 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 318 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 377 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 378 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 437 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 438 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 497 Query: 483 ---EDNHESTQYKCYA 495 E + + K +A Sbjct: 498 AVEEAQAVARKRKSFA 513 >gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 511 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 290/496 (58%), Positives = 362/496 (72%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ ++V S+ + + ++PLFV+++ + Sbjct: 16 RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLNMYVASVLQSASLMPLFVVIITAL 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +FTQN W+L+TL + N+ L ++ +I WR LL GQ +G CW Sbjct: 76 GVYFTQNTQLLFWALLTLTCHTGNILLARRARRQEITSENARKWRRLLLSGQFLLGCCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV +F P V+AL+ ++ +S Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLAAFSPAVLALAAKSGLSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL T L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DLLEISLTVAFTTTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495 Query: 483 --EDNHE-STQYKCYA 495 E+ H + + K +A Sbjct: 496 AVEEAHAVARKRKSFA 511 >gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 517 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 220/480 (45%), Positives = 313/480 (65%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R R + ++V + D LG + DFD E++ L ++ + +P+F+++VA I Sbjct: 17 RERALRRREVARTVRTVRDRLGTRDGLRPDFDDELLVLFAKARISAAYPVPMFIVIVAAI 76 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 +T + +W+L T++++ ++ ++ + + WR +G GLCW Sbjct: 77 SFLWTDAALVVLWALFTISIHGLTVATCRRFERTPEEARTAARWRRQFTIGDALYGLCWA 136 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L L+ E L +++ AT+LI +++ + + LP A+ S P+ +A++ + Sbjct: 137 ALFLLPVSRNATEGLEVFQFATMLIVIAMCTMQSSTLPRALLASTLPITLAIALAFLQQQ 196 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + ++A M A FF + L S + +L+ +AEKD LIAELE A ++SDE+R+RA Sbjct: 197 APIHYAMAAMAVGAQGFFLVLGNQLLNSAITMLAYRAEKDHLIAELEQANAVSDESRRRA 256 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLA+MSHELRTPLNAILGFSE+++ E +GP+ N TY+ Y DIH SGQHLL Sbjct: 257 EEANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPMANPTYRSYAADIHGSGQHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAGRYEL+E A++LIDIV +C M+Q+RA+ K+I I + + L +W Sbjct: 317 NLINEILDLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIRAKAKDITIRESHEDGLPRLW 376 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQVILNLLSNAVKFT G V + +G G GQ++SI+DNGPGI E EIP VL Sbjct: 377 ADERAIRQVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQFVSIRDNGPGIPEDEIPIVLQ 436 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQG+IAIKSAE G GLGL I Q+++A HGG F ++S+LREG E I LP+ RVL +P Sbjct: 437 AFGQGAIAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRLREGTEAIVTLPSNRVLQAMP 496 >gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 511 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 264/484 (54%), Positives = 341/484 (70%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T L + F+RE++ LH+ES+ + LPL V+++A Sbjct: 16 RSRNHRNKAVSKTVRATRQRLQTGSSAPSGFEREMLLLHIESVLHGAMALPLLVIMIAAS 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + + +W+L+ L+ +A + L +K D+ +V VWR L Q+ GLCW Sbjct: 76 GVYLSGEANILVWALMALSAHAVTIFLARKAKREDVVAEKVSVWRRRFLACQVLTGLCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + TL + + +++ L IAL+I+A+ F+L A++ +F PV+ L A+ + Sbjct: 136 IFTLPDCASCGQVASGLFEGTVLFIALAITAMGTFLLRNALYYTFLPVLCVLCFSALATG 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +DI AG+LA +L F ++T + ++NV ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DPVDIGFAGILALSLIFLAFMTGSMNRANVHILSVQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GPL+N TYKEY DIHRSG+HLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYKEYTLDIHRSGEHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAG+YELSE A++L +IV +CI M+QLRA+ KNI I Q+ + ++ SVW Sbjct: 316 NLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARSKNITIGQQFEQAMPSVW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV LNLLSNAVKFT GG V V VGWT+G GQY+SI+DNGPGI E EIP VL+ Sbjct: 376 ADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDNGPGIPEEEIPIVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF++RSKLR G E IAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLRVGTEAIAILPPRRVLQSLP 495 Query: 483 EDNH 486 Sbjct: 496 PVED 499 >gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 523 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 195/483 (40%), Positives = 277/483 (57%), Gaps = 5/483 (1%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 + + D L ++ FD E++ + ++ S ++ L V+ + + + Sbjct: 18 RTRRVAAQRVREARDRLTSSSGTRPAFDHELLRQYAQTRTSASLVVILLVVTTGALSSLW 77 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 +W+ LA++A + K + WR + + GL WT++ + Sbjct: 78 VSMVNAALWTCGILAIHAVVIRSCAKFLGQPPAPATTRKWRRRFVTLDLLYGLGWTVILI 137 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + +L+ +++S++ LP A F S PV A++T ++ + + Sbjct: 138 HPTDVGVVSNTLMLF--IMLLVVAVSSMLAASLPIAAFASTVPVTAAIATNFVLRGTLDN 195 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA + A +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 196 YILAALAVLAECYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAAN 255 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 ++KSRFLA MSHELRTPLNAILGFSEV++ E GP YK+Y DIH SG HLLNLIN Sbjct: 256 VSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGPHAVPVYKDYSADIHNSGVHLLNLIN 315 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E SL+ V +C +L+LRA + I I + + + +W DE+ Sbjct: 316 EILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRASNRGITIHEAFEEDMPKLWGDER 375 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 RQ++LNLLSNA+KFT GG + + GWT+ GQY+ +KD G GI + EIP VL SFGQ Sbjct: 376 ATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLIVKDTGSGIPDDEIPIVLASFGQ 435 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPE 483 GS +IKSAEQG GLGLPIA+S++ HGG F ++SKLR G EVI P RV+ +PE Sbjct: 436 GSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIITFPPERVMAALAPLPE 495 Query: 484 DNH 486 D Sbjct: 496 DTP 498 >gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 525 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 194/475 (40%), Positives = 275/475 (57%), Gaps = 2/475 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 + + D L ++ FD E++ + ++ S ++ L V+ + + + Sbjct: 18 RTRRVAAQRVREARDRLTSSSGTRPAFDHELLRQYAQTRMSASLVVILLVVATGALSSLW 77 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 +W+ LA++A + L + MN WR + + GL WTL+ Sbjct: 78 LPMLYAGIWTCGILAIHAVVIRLCSRFMNLPPAPATTRRWRHRFVALDLLYGLGWTLI-- 135 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + +L+ +++S++ LP A F S PV A++ ++ + Sbjct: 136 LVHPSGVDVVSNTLMLFLMLLVVAVSSMLAASLPIAAFASTIPVTAAIALNFVLRGTLDA 195 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA + A +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 196 YILAALAVAAECYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAAN 255 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 ++KSRFLA MSHELRTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLIN Sbjct: 256 VSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGSHAVAVYKDYSADIHNSGVHLLNLIN 315 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E SL+ +V +C +L+LRA + I I + + + +W DE+ Sbjct: 316 EILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRASSRGITIHEVFEDEMPKLWGDER 375 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 RQ++LNLLSNA+KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQ Sbjct: 376 ATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLSVKDTGSGIPEDEIPIVLASFGQ 435 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GS +IKSAEQG GLGLPIA++++ HGG F ++SKLR G EVI P RV+ + Sbjct: 436 GSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKSKLRIGTEVIITFPPERVMAAL 490 >gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 511 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 287/496 (57%), Positives = 362/496 (72%), Gaps = 3/496 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ K V + T + L + S FDR+++ ++V S+ + + I+PLF++L+ + Sbjct: 16 RSRSHRNKAVSKAVRQTRERLQSGHASNSSFDRDVLKMYVASMLQGATIMPLFIVLITAL 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + T+N W+L+TL N+ L ++ +I WR LL+GQ +G CW Sbjct: 76 GVYITENTQLLFWALLTLTCQTGNILLARRARRQEITPESARKWRRLLLLGQFLLGCCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L T P +YK ATLLIALS++A+SNFML AV ++F P ++AL+ ++ +S Sbjct: 136 VFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAVLVAFAPAILALAAKSGLSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +L+ISL G+ + L FF YI+ LFKSN++ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DLLEISLTGLFTSTLVFFNYISDRLFKSNLRILSYQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL N TYKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA+ KNI I + + L ++W Sbjct: 316 DLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQLPAIW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLREG EVIAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAKRVLQSLP 495 Query: 483 ---EDNHESTQYKCYA 495 E + + K +A Sbjct: 496 AVEEAQAVARKRKSFA 511 >gi|92117022|ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799916|gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 536 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 200/486 (41%), Positives = 287/486 (59%), Gaps = 2/486 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 + + D L ++ FD E++ + ++ S ++ L V+ + ++ Sbjct: 24 RNRRAATQRVREARDRLTSTSGTRPAFDHELLRQYAQTRLSASLVVMLLVVATGVLFGFW 83 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 + +W+ L ++A + + WR ++ + GLCWT + L Sbjct: 84 MEPASAAVWTFGMLCIHAVTIYNCNNYLKEPSSPNSTRKWRARFILLDLLYGLCWTTI-L 142 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 V P + P T+ LL+ +++S++ LP A F + PV A++ + ++ + Sbjct: 143 VHPAGFDPVTNTLMMFLMLLV-VAVSSMLAASLPIAAFAATAPVTSAIALKFVIGGSFNN 201 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA + A +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 202 YILAVLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 261 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKSRFLA MSHELRTPLNAILGFSEV++ E G YK Y DIH SG HLLNLIN Sbjct: 262 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKSYSADIHNSGVHLLNLIN 321 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E A+SL+ +V +C +L+LRA + I I + + + +W DE+ Sbjct: 322 EILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDER 381 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 RQ++LNLLSN++KFT GG + + VGWT+ GQY+S+KD+G GIAE EIP VL SFGQ Sbjct: 382 ATRQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVKDSGSGIAEDEIPIVLASFGQ 441 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G+ +IKSAEQG GLGLPIA+S++ HGG F +RSKLR G EVI P RV++ + Sbjct: 442 GTNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAPMAE 501 Query: 487 ESTQYK 492 E+ + Sbjct: 502 EAPPIQ 507 >gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 509 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 276/491 (56%), Positives = 363/491 (73%), Gaps = 3/491 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR ++ + V + T + L + FDRE++ +HV++L + + ++P+FV++VA + Sbjct: 16 RSRSHRNRAVSKAVRQTRERL--QSGHSRSFDRELMMMHVDTLLQGASVMPIFVIIVAAL 73 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + T++ +W++ TL ++A N+ LG++ ++ +G WR LL+GQ+ IG CW Sbjct: 74 GAYLTRDAQIFIWAIPTLTMHAVNMLLGRRAKKYEMTVGRARKWRQILLLGQLFIGFCWA 133 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + + + +YK A LL+A+ I+ ++NFMLP AV +F P +VAL+ +A ++ Sbjct: 134 FFAMQDCSACGGDSFVLYKGAALLVAICITTMANFMLPRAVPFAFAPAIVALAVKATLTR 193 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 LDI+LA + A FFT+IT +F+SN+KILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 194 DPLDITLAAAVTVAAIFFTFITNRMFQSNLKILSFQSEKDDLIAELEVAKSMSDEARRRA 253 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPLNN TY+EY DIHRSGQHLL Sbjct: 254 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLNNATYREYTTDIHRSGQHLL 313 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAG+YEL+E AISL+D+ +CI M+QLRA+ KNI I + + L SVW Sbjct: 314 NLINEILDLSRIEAGKYELNEEAISLLDVAEDCIGMVQLRARGKNISISPQFELQLPSVW 373 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK +RQVILNLLSNAVKFT GG + V VGWTSG GQY++I+DNGPGI E EIP VL+ Sbjct: 374 ADEKSIRQVILNLLSNAVKFTPQGGEITVKVGWTSGGGQYVAIRDNGPGIPEEEIPVVLS 433 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG EVIAILP RVL +P Sbjct: 434 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFMLKSKLREGTEVIAILPAKRVLQSLP 493 Query: 483 E-DNHESTQYK 492 ++ S + + Sbjct: 494 AVEDAPSVERR 504 >gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 536 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 207/484 (42%), Positives = 286/484 (59%), Gaps = 3/484 (0%) Query: 4 SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63 S +++ + D L ++ FD E++ + ++ S ++ L ++ + Sbjct: 22 SARHRRATTQR-VREARDRLTSTSGTRPAFDHELLRQYAQTRLSASFVVMLLLVATGVLF 80 Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 ++ W+ L ++ + K + WR ++ + GLCWT Sbjct: 81 GFWMAPAAAAAWTFGMLCIHTVIIYNCKGYLKEPSSATSTRKWRARFILFDLLYGLCWTT 140 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + LV P P T+ LL+ +++S++ + LP A F + PV A++ + M Sbjct: 141 I-LVHPAGSDPVTNTLMMFLMLLV-VAVSSMLSASLPIAAFAATAPVTSAIAFKFAMGGS 198 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + LA + TA FF + + L + + L +AEKD LI ELE AK++SDE R RAE Sbjct: 199 FNNYILAILTLTAEGFFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAE 258 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N+AKSRFLA MSHELRTPLNAILGFSEV++ E G YK Y DIH SG HLLN Sbjct: 259 SANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLN 318 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LINEILDLSRIEAGRYEL+E A+SL+ +V EC +L+LRA + I I + + + +W Sbjct: 319 LINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEIFEQGMPRIWG 378 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE+ RQ++LNLLSNA+KFT GG + + VGWT+ GQY+S+KDNG GIAE EIP VL S Sbjct: 379 DERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDNGSGIAEDEIPIVLAS 438 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 FGQGS +IKSAEQG GLGLPIA+S++ HGG F +RSKLR G EVI P RV++ + Sbjct: 439 FGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAP 498 Query: 484 DNHE 487 E Sbjct: 499 MAEE 502 >gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 530 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 194/469 (41%), Positives = 273/469 (58%), Gaps = 2/469 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ ++ S ++ L V++ + ++ W++ L Sbjct: 38 DRLTSTSGTRPAFDHELVRQFAQTRLSASFVIMLLVVVTGILFAFWFDPVTAGAWTVGML 97 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 ++A + + + WR + + GL WT + + Sbjct: 98 CIHAVMIRNCSRFLQEPASPPRTRSWRRRFVALDLLYGLAWTTI--LVHPLGLTVVSNTL 155 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ ++ LA + A +F Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATVPVTAAITLNFVLGGTFDSYVLAALTVAAEGYF 215 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LI ELE AK++SDE R RAE N+AKSRFLA MSHEL Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YKEY DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E AISL+ +V +C +L+LRA + I I + + + +W DE+ +RQV+LNLLSN++ Sbjct: 336 LNEEAISLVHVVTDCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSI 395 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + VGWT+ GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGL 455 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + E+ Sbjct: 456 GLPIAKSLVDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPMADEAP 504 >gi|85715389|ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697810|gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 536 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 200/481 (41%), Positives = 282/481 (58%), Gaps = 2/481 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 + + D L ++ FD E++ + ++ S ++ L ++ + ++ Sbjct: 24 RHRRATAQRVREARDRLTSTSGTRPAFDYELLRQYAQTPLSASFVVMLLLVATGVLFGFW 83 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 + W+ L ++A + K + + WR ++ + GLCWT + L Sbjct: 84 MEPAAAAAWTFGMLCIHAVIIYNCKNYLKAPSSANSTRKWRARFILLDLLYGLCWTTI-L 142 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 V P P T+ LL+ +++S++ + LP A + PV A++ + Sbjct: 143 VHPAGSDPVTNTLMMFLMLLV-VAVSSMLSASLPIAALAATAPVTSAIALKFATGGSFNS 201 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA + TA +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 202 YILAILALTAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 261 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKSRFLA MSHELRTPLNAILGFSEV++ E G YK Y DIH SG HLLNLIN Sbjct: 262 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLNLIN 321 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E A+SL+ +V EC +L+LRA + I I + + + +W DE+ Sbjct: 322 EILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEVFEQGMPRIWGDER 381 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 RQ++LNL+SNA+KFT GG + + +GWT+ GQY+ +KDNG GIAE EIP VL SFGQ Sbjct: 382 AARQIVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLGVKDNGSGIAEDEIPIVLASFGQ 441 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GS +IKSAEQG GLGLPIA+S++ HGG F ++SKLR G EVI P RV++ + Sbjct: 442 GSNSIKSAEQGAGLGLPIAKSLIDLHGGTFTLKSKLRVGTEVIVTFPPERVMSALAPMAE 501 Query: 487 E 487 E Sbjct: 502 E 502 >gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 511 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 266/484 (54%), Positives = 345/484 (71%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 +SR ++ K V + T L + F+RE++ LH+ES+ + LPL V+L+A Sbjct: 16 KSRSHRNKAVSKTVRATRQRLQTGSSAPSGFEREMLLLHIESVLHGAMALPLLVILIAVS 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + + +P W+L+ L+ +A + L +K D+ +V VWR L GQ+ GLCW Sbjct: 76 GIYLSGDPHILAWALLALSAHAVTIFLARKAKREDVVTEKVSVWRRRFLAGQMLTGLCWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + TL + + +++ L IAL+++A+ F+L A++ +F PV+ AL ++ + Sbjct: 136 IFTLPDCASCGEIASGLFEGTVLFIALAVTAMGTFLLRNALYYTFLPVLAALGFSSLRTG 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 +DI L G+LA +L F ++T + ++NV ILS Q+EKDDLIAELEVAKS+SDE R+RA Sbjct: 196 DAVDIGLTGILALSLVFLAFMTDRMNRANVHILSVQSEKDDLIAELEVAKSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GPL+N TYKEY DIHRSG+HLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYKEYTLDIHRSGEHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAG+YELSE A++L +IV +CI M+QLRA+ KNI I + + ++ SVW Sbjct: 316 NLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARGKNITIGHQFEQAMPSVW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK MRQV LNLLSNAVKFT GG V V VGWT+G GQY+SI+DNGPGI E EIP VL+ Sbjct: 376 ADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDNGPGIPEEEIPIVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A HGGQF++RSKLREG E IAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLREGTEAIAILPPRRVLQSLP 495 Query: 483 EDNH 486 Sbjct: 496 PVED 499 >gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4] Length = 511 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 256/479 (53%), Positives = 340/479 (70%) Query: 4 SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63 S ++ K + T + L + F+++++++H ++ + + I P +L A + Sbjct: 17 SHSHRNKATAKALRVTRERLHSTHGGTPAFEKDLLSMHTQASLQGAAITPFVTILTAGLT 76 Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + + +PI+ +W+L+TL+++A N+ L +K WR LL G +A+G CW Sbjct: 77 AYLSGSPIYILWALLTLSIHALNILLIRKAAKRIPVTHRQEHWRHVLLAGHLAMGCCWAA 136 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 T P + K + LL+ L +A++N +L AV +F P ++ALS QA S Sbjct: 137 FTFQTCDACGPTSDLLLKGSVLLVVLCTTAMTNILLRQAVLYAFTPPIIALSAQAFFSQR 196 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 V D +LA ++ FF YIT L+ SN+K++S Q+EKDDLIAELEVAKS+SDE R+RAE Sbjct: 197 VDDATLALAFTVSVLFFIYITGRLYVSNLKLISFQSEKDDLIAELEVAKSMSDEARRRAE 256 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E N+AKSRFLASMSHELRTPLNAILGFSEV+ E +GPLNN Y+EY GDIHRSGQHLLN Sbjct: 257 EANMAKSRFLASMSHELRTPLNAILGFSEVMAQEVLGPLNNPLYREYSGDIHRSGQHLLN 316 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LINEILDLSRIEAG+Y+LSE +ISL+++ +C+ M+QLRA+ K+I+I Q+ + +L ++WA Sbjct: 317 LINEILDLSRIEAGKYDLSEESISLLEVAEDCVGMVQLRAKAKDIKISQQYEINLPALWA 376 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DEK +RQV+LNLLSNAVKFT GG + V VGWT G GQY+SIKDNGPGIAE EIP VL++ Sbjct: 377 DEKALRQVVLNLLSNAVKFTPPGGEILVKVGWTVGGGQYVSIKDNGPGIAEEEIPVVLSA 436 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 FGQGSIAIKSAEQG GLGLPI Q+I+A HGG+F ++SKLREG EVIAILP RVL IP Sbjct: 437 FGQGSIAIKSAEQGTGLGLPIVQAILAKHGGEFKLKSKLREGTEVIAILPAKRVLQTIP 495 >gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 530 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 195/469 (41%), Positives = 272/469 (57%), Gaps = 2/469 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + ++ S ++ L V++ + + W++ L Sbjct: 38 DRLTSTSGTRPAFDHELVRQYAQTRLSASFVIMLLVVVTGALFGVWLDPITAGAWTVGML 97 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 V+A + + + WR + + GL WT + + Sbjct: 98 CVHAVVIRNCNRFLQEPASPPRTRGWRRRFVALDLLYGLAWTTI--LVHPLGLTVVSNTL 155 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ I+ LA + A +F Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALATTVPVTCAIALNFILGGTFDSYVLAALTVAAEGYF 215 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LI ELE AK++SDE R RAE N+AKSRFLA MSHEL Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E AISL+ +V +C +L+LRA + I I + + + +W DE+ +RQV+LNLLSNA+ Sbjct: 336 LNEEAISLVHVVSDCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + VGWT+ GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLPIA+S++ HGG F ++SKLR EVI P RV++ + E+ Sbjct: 456 GLPIAKSLVDMHGGTFTLKSKLRISTEVIVTFPPERVMSALAPMADEAP 504 >gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 546 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 197/483 (40%), Positives = 285/483 (59%), Gaps = 3/483 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 + + + D L ++ FD E++ + ++ S ++ L V+ + + Sbjct: 39 SSRRAAAQRVREARDKLTSTSGTRPAFDAEMLRQYAQTRLSASYVVMLLVVATGVLFGLW 98 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 Q W+ L ++ A + ++ + WR +V + GLCW + + Sbjct: 99 MQPIPAAAWTAGMLCIHGAMIRSCRRFLTEPASPAATRAWRTRFVVLDLLYGLCWMAILI 158 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 E L ++ +L+ +++S++ LP A + PV VA++ ++ + + Sbjct: 159 HPVLDMVTETLMMF---LMLLVIAVSSMLAANLPIAALAATAPVAVAMALSFAVTGSLDN 215 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA + A +F + + L S L +AEKD LI ELE AK++SDE R RAE N Sbjct: 216 YILAALALAAEGYFVLLAHRLHSSTFATLEARAEKDALIGELEQAKAISDEARHRAESAN 275 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKSRFLA MSHELRTPLNAILGFSEV++ E G YKEY DIH SG HLLNLIN Sbjct: 276 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 335 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E A+SL+ IV +C +++LRA + I I + + ++ +WADE+ Sbjct: 336 EILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRASSRGITIHEVFEQAMPRLWADER 395 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV+LNLLSN++KFT GG + + GWT+ GQY+S++D G GI E EIP VL SFGQ Sbjct: 396 AIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLSVRDTGSGIPEDEIPVVLASFGQ 455 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GS +IKSAEQG GLGLPIA++++ HGG F ++SKLR G EVI P RV++ + + Sbjct: 456 GSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLSD 515 Query: 487 EST 489 +S Sbjct: 516 DSP 518 >gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 498 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 423/498 (84%), Positives = 458/498 (91%), Gaps = 3/498 (0%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 M S K ++K LIS GD++ ++ P K FDREII LHVESLFRVSPILPLF+LLVA Sbjct: 1 MRISNKFQQKTTCRLISSIGDNMSIDRPPKTGFDREIINLHVESLFRVSPILPLFILLVA 60 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 NIGTWFTQNP+ P+WSLITLAVYAANLSLG+KV+NSDIK VY+WR+WLL+GQIAIGLC Sbjct: 61 NIGTWFTQNPMLPIWSLITLAVYAANLSLGQKVINSDIKTERVYIWRVWLLIGQIAIGLC 120 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV+VALSTQAI+ Sbjct: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVLVALSTQAII 180 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 SMHVLD+SLAGMLATALSFFTYITYHLFKSNVKILS Q+EKDDLIAELEVAKSLSD+TR+ Sbjct: 181 SMHVLDVSLAGMLATALSFFTYITYHLFKSNVKILSFQSEKDDLIAELEVAKSLSDKTRQ 240 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE NLAKSRFLASMSHELRTPLNAILGFSEVI LETMGPLNNETYKEYIGDIHRSGQH Sbjct: 241 RAEEANLAKSRFLASMSHELRTPLNAILGFSEVIGLETMGPLNNETYKEYIGDIHRSGQH 300 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LLNLINEILDLSRIEAGRYELSESAISLIDI+ EC+IMLQLRAQEK IEIFQ+IDP+LSS Sbjct: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIMHECMIMLQLRAQEKYIEIFQQIDPTLSS 360 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 VWADEKGMRQVILNLLSNAVKFT+IGG+V V VGWT+G GQYISIKDNGPGI+EGE+PTV Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYISIKDNGPGISEGEMPTV 420 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 L+SFGQGSIAIKSAEQGVGLGLPI QSIMANHGGQF I+SKL+EGVEVIAILP+TRVLN Sbjct: 421 LSSFGQGSIAIKSAEQGVGLGLPIVQSIMANHGGQFRIKSKLQEGVEVIAILPSTRVLNN 480 Query: 481 IPEDNHES---TQYKCYA 495 + ED +QYK YA Sbjct: 481 VSEDASNKQNPSQYKRYA 498 >gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] Length = 532 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 196/469 (41%), Positives = 278/469 (59%), Gaps = 2/469 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + E+ S ++ L V++ + + W++ L Sbjct: 39 DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVAML 98 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 +++A + + + + WR ++ + GL WT ++ T + Sbjct: 99 SIHAVVIRNCNRFLKEPASVPRTRTWRRRFVLLDLLYGLAWT--AILIHPTELNVVSSTL 156 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ +S LA + A +F Sbjct: 157 LMFLMLLVVAVSSMLAASLPIAALAATMPVTAAIAVNFALSGSFDKYVLAALTVAAEGYF 216 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LIAELE +K++SDE R RAE N+AKSRFLA MSHEL Sbjct: 217 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 276 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 277 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 336 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E AISL+ +V +C +L+LRA + I I + + + +W DE+ +RQV+LNLLSNA+ Sbjct: 337 LNEEAISLVHVVTDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 396 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL Sbjct: 397 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 456 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + E+ Sbjct: 457 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLADEAP 505 >gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 531 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 196/469 (41%), Positives = 278/469 (59%), Gaps = 2/469 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + E+ S ++ L V++ + + W++ L Sbjct: 38 DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVAML 97 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 +++A + + + + WR ++ + GL WT ++ T + Sbjct: 98 SIHAVVIRNCNRFLKEPASVPRTRTWRRRFVLLDLLYGLAWT--AILIHPTELNVVSSTL 155 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ +S LA + A +F Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATMPVTAAIAVNFALSGSFDKYVLAALTVAAEGYF 215 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LIAELE +K++SDE R RAE N+AKSRFLA MSHEL Sbjct: 216 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 275 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E AISL+ +V +C +L+LRA + I I + + + +W DE+ +RQV+LNLLSNA+ Sbjct: 336 LNEEAISLVHVVTDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL Sbjct: 396 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + E+ Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPLADEAP 504 >gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 511 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 272/486 (55%), Positives = 346/486 (71%), Gaps = 2/486 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSRK++ K V + T + L ++RE++T+H+ + + I+PLF++L + I Sbjct: 16 RSRKHRNKAVFDTVKTTRERLQQGAGGSEAYEREMLTMHIAEALQGAMIMPLFIVLASII 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + T + +WSLI L+ +A +L L K+ I + WR L QI IG W Sbjct: 76 GLYITGDIGLIIWSLIALSFHAMSLVLAKRAAKQGITAENLPKWRNLFLAMQILIGCAWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L EP P + +K ATLLIALS++A++NFML A F++F PV+ AL +++S Sbjct: 136 MFALAEPVRNNPALVLFFKGATLLIALSLTAMANFMLRRATFMTFLPVLAALCVTSVVSR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 D+ LA M A+ F IT L+++++K+LS Q EKDDLIAELEVA S+SDE R+RA Sbjct: 196 DPFDVGLALMFGMAILFCHRITSRLYQTSIKLLSSQTEKDDLIAELEVANSMSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GPLNN YKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNNPLYKEYSGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAGRY+L+E A+S+++I +CI M+QLRA+ K I I Q+ + SL VW Sbjct: 316 DLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRARAKTIRISQQFESSLPQVW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK +RQVILNLLSNAVKFT GG + V GWT+G GQY+SIKDNGPGI E EIP VL+ Sbjct: 376 ADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVSIKDNGPGIPEEEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG E IAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAILPAKRVLQSLP 495 Query: 483 --EDNH 486 E+ H Sbjct: 496 AVEETH 501 >gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 511 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 269/486 (55%), Positives = 346/486 (71%), Gaps = 2/486 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RS+K++ K V + T + L ++RE++T+H+ + + I+PLF++L + I Sbjct: 16 RSKKHRNKAVFDTVKTTRERLQQGAGGNEAYEREMLTMHIAEALQGAMIMPLFIVLASII 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G + T + +WSLI L+ +A +L L K+ I + W+ L QI IG W Sbjct: 76 GLYITGDISLIIWSLIALSFHAMSLVLAKRAAKQAITDDNLQHWKNLFLGMQILIGCAWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L EP P + +K +TLLIALS++A++NFML A F++F PV+ AL + +S Sbjct: 136 MFALAEPVRNDPTLVLFFKGSTLLIALSLTAMANFMLRRATFMTFLPVLAALCITSAISR 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 D+ LA M A+ F IT L+++++K+LS Q EKDDLIAELEVA S+SDE R+RA Sbjct: 196 DPFDVGLALMFGMAILFCHRITSRLYQTSIKLLSSQTEKDDLIAELEVANSVSDEARRRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GPLNN YKEY GDIHRSGQHLL Sbjct: 256 EEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNNPLYKEYSGDIHRSGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAGRY+L+E +IS+++I +CI M+QLRA+ KNI I Q+ + SL VW Sbjct: 316 DLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRARAKNIRISQQFEASLPQVW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK +RQVILNLLSNAVKFT GG + V GWT+G GQY+SI+DNGPGI E EIP VL+ Sbjct: 376 ADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVSIRDNGPGIPEDEIPVVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q+I+A H GQF+++SKLREG E IAILP RVL +P Sbjct: 436 AFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAILPAKRVLQSLP 495 Query: 483 --EDNH 486 E+ H Sbjct: 496 AVEETH 501 >gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 512 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 204/471 (43%), Positives = 277/471 (58%), Gaps = 1/471 (0%) Query: 15 LISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74 + + L + FD E++ + + L LF L VA + + Sbjct: 29 DVRSARERLTSSIGLERAFDYELLRIFAQYRIGAFLPLTLFALCVAAASAVWLPLVWSAV 88 Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W L AA + + + R ++G++ W LL L+ Sbjct: 89 WLCGVLGSIAAVAVFARSFLRQAPDSVALRGSRRRAVIGEVTQSTAWALLALLPFSVEAA 148 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 T L+I + + + +P A P+ +A +++ + L M Sbjct: 149 NAQTFVLF-VLVIVAAGTTMLAATVPLAAGAGLVPLSLATLGLLLVTRGFESVMLVAMAV 207 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 A FF ++ HLF+S V L +AEKD + ELE AK+ SDE R+RAEE NLAKSRFLA Sbjct: 208 GAQLFFLVLSNHLFRSTVAALQSRAEKDAIFGELEQAKANSDEARRRAEEANLAKSRFLA 267 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAILGFSEV++ E GP + +Y+EY DIH SG HLLNLINEILDLSRI Sbjct: 268 TMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQEYSTDIHESGLHLLNLINEILDLSRI 327 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGRYEL+E A+ L +V EC M+ LRA+ KN + +DPSL +WADE+ +RQ++LN Sbjct: 328 EAGRYELNEEAVQLAYVVEECRHMMGLRARAKNQNFRELVDPSLPRLWADERAVRQIVLN 387 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 +LSNA+KFT GG + + VGWTS GQY+SIKD GPGI E EIPTV++SFG+GS+AIK+A Sbjct: 388 ILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDTGPGIPEDEIPTVMSSFGRGSLAIKTA 447 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 EQG GLGLPI + ++ HGG F ++SK REG EVI P +RV++ +P + Sbjct: 448 EQGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPASRVMDALPAVD 498 >gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 530 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 195/461 (42%), Positives = 277/461 (60%), Gaps = 2/461 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + E+ S ++ L V++ + + W++ L Sbjct: 38 DRLTSTSGTRPAFDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVGML 97 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 +++A + + + + +WR ++ + GL WT ++ T + Sbjct: 98 SIHAVVIRNCSRFLQEPASLPRTRIWRRRFVLLDLLYGLAWT--AILIHPTGLSVVSSTL 155 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ +S LA + A +F Sbjct: 156 LMFLMLLVVAVSSMLAASLPIAALAATVPVTAAIAVNFALSGSFDKYILAALTVAAEGYF 215 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LIAELE +K++SDE R RAE N+AKSRFLA MSHEL Sbjct: 216 ALLAHRLHSTTLATLQARAEKDVLIAELEQSKAISDEARHRAEAANVAKSRFLAQMSHEL 275 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVPAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E AISL+ +V +C +L+LRA + I I + + + +W DE+ +RQV+LNLLSNA+ Sbjct: 336 LNEEAISLVHVVSDCHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAI 395 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQGS +IKSAEQG GL Sbjct: 396 KFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGL 455 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSAL 496 >gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 513 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 205/475 (43%), Positives = 285/475 (60%), Gaps = 1/475 (0%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 + + + + + L + FD E++ + + L L + VA ++ Sbjct: 22 RRRKLARDVRSARERLTSSIGLERAFDYELLRVFAQYRIGAFLPLMLLAISVAAASAFWL 81 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 +W L A +L ++ + + + R ++G++ W+LL L+ Sbjct: 82 PVTWSALWLSGVLVCIGAVAALARRFLRQEPDSISLRPARRRAVIGEVLQSTAWSLLVLL 141 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 T L+I +++ + +P A P+ +A + A M+ + + Sbjct: 142 AFSVEGSNARTFVLF-VLVIVAAVTTMLAATVPLAAAAGLLPLSLATLSLAWMTRGLESV 200 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L GM A FF ++ HL+ S V L +AEKD + ELE AK+ SDE R+RAEE NL Sbjct: 201 LLIGMAVGAQLFFLVLSNHLYGSTVAALRSRAEKDAIFGELEQAKANSDEARRRAEEANL 260 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKSRFLA+MSHELRTPLNAILGFSEV++ E GP + +Y+EY DIH SG HLLNLINE Sbjct: 261 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQEYSTDIHDSGMHLLNLINE 320 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSRIEAGRYEL+E A+ L +V EC M+ LRA+ KN + +DPSL +WADE+ Sbjct: 321 ILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAKNQVFRELVDPSLPRLWADERA 380 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQV+LN+LSNA+KFT GG + + VGWTS GQY+SIKD GPGI E EIPTV++SFG+G Sbjct: 381 VRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDTGPGIPEDEIPTVMSSFGRG 440 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 S+AIK+AEQG GLGLPI + ++ HGG F ++SK REG EVI P RV++ +P Sbjct: 441 SLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGTEVIVTFPAARVMDALP 495 >gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 545 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 198/461 (42%), Positives = 278/461 (60%), Gaps = 2/461 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + ++ S ++ L V + + Q +W+ L Sbjct: 49 DRLTSSSGTRPAFDHELLRQYAQTRQSASLVVMLLVAATGLLFGIWMQPLAAAVWTCGML 108 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 ++A + + + G+ WR ++ + GLCWT + L PG Sbjct: 109 CIHAVIIRNCGRFLGEAQSPGQTRKWRNRFVLLDLLYGLCWTTILLHPPGAS--MVSNTL 166 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ + LP A + PV +L+ I++ + L + A +F Sbjct: 167 LMFLMLLVVAVSSMLSASLPVAALAATAPVTFSLAVNFILTGTFDNYILGLLTLAAEGYF 226 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + + L +AEKD LI ELE AK++SDE R RAE N+AKSRFLA MSHEL Sbjct: 227 ALLARRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 286 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 287 RTPLNAILGFSEVMKSEIFGAHAVAVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 346 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E A+SL+ +V +C +L+LRA + I I + + + +WADE+ RQ++LNLLSN++ Sbjct: 347 LNEEAVSLVHVVADCHHLLKLRASNRGITIHEVFEQGMPRIWADERAARQIVLNLLSNSI 406 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + VGWT+ GQY+S+KD G GIAE EIP VL SFGQGS +IKSAEQG GL Sbjct: 407 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGL 466 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + Sbjct: 467 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSAL 507 >gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 533 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 196/469 (41%), Positives = 276/469 (58%), Gaps = 2/469 (0%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L ++ FD E++ + + S ++ L V+ + + Q W+ L Sbjct: 38 DRLTSTSGTRPAFDHELLRQYAQMRQSASIVVILLVVATGLLFAIWIQPLSAAAWTCGML 97 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 ++A + + + WR ++ + G+CWT + + P Sbjct: 98 CIHAVMIRNCGRFLGEQQSPLRTRKWRTRFVLLDLLYGVCWTAILVHPP--GVEVVSNTL 155 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 +L+ +++S++ LP A + PV A++ ++S + LA + A +F Sbjct: 156 LMFLMLLVVAVSSMLAANLPIAALAATAPVTAAIAANFLLSGTFDNYILALLTVAAEGYF 215 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + L + + L +AEKD LI ELE AK++SDE R RAE N+AKSRFLA MSHEL Sbjct: 216 ALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAEAANVAKSRFLAQMSHEL 275 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G YK+Y DIH SG HLLNLINEILDLSRIEAGRYE Sbjct: 276 RTPLNAILGFSEVMKSEIFGAHAVAVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYE 335 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+E A+SL+ +V +C +L+LRA + I I + + + +W DE+ RQ++LNLLSNA+ Sbjct: 336 LNEEAVSLVHVVADCHHLLKLRASSRGITIHEVFEQGMPRIWGDERAARQIVLNLLSNAI 395 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + VGWT+ GQY+S+KD G GIAE EIP VL SFGQGS +IKSAEQG GL Sbjct: 396 KFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGL 455 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLPIA+S++ HGG F ++SKLR G EVI P RV++ + E+ Sbjct: 456 GLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPMADEAP 504 >gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] Length = 506 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 225/480 (46%), Positives = 314/480 (65%), Gaps = 1/480 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R + ++ DV + T D L + DFDRE++ LH ++ + ++PL VL +A Sbjct: 16 RRKPHRNSDVARAVRKTRDRLSQQAG-NPDFDRELLKLHAGAMTSGAVVIPLLVLAIAAA 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +W+L TL Y + +++ ++ R LVG GL W Sbjct: 75 GWLAGVGNEIGLWALFTLTCYTIVAFMARRIERTEASELNPLQTRREFLVGHFLCGLGWG 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 ++ G + + K+ LL+A++ +AL L A+ +F V + Sbjct: 135 WFVVLGCGACAVDQFPVVKAVVLLLAMAGTALMASSLSGALLATFAVPVALYAYVGTRLW 194 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ +AG+L +L FF Y+ L ++++ +LS ++EKD LIAELE AKS+SDE R+RA Sbjct: 195 MPVEAMMAGLLVLSLPFFVYVARQLNRASLMLLSFRSEKDALIAELETAKSMSDEARRRA 254 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GP++N TY++Y D+H SGQHLL Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAHDVHDSGQHLL 314 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAGRY+L+E + L++IV +C M++L+A+ K+I + Q + +L ++ Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVVQDFEQTLPRLF 374 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYIS+KDNGPGI E EIP VL+ Sbjct: 375 ADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISVKDNGPGIPEDEIPVVLS 434 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+ +P Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494 >gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. ORS278] gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 197/483 (40%), Positives = 285/483 (59%), Gaps = 3/483 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 ++ + + D L ++ FDRE++ + ++ S I+ L V+ + + + Sbjct: 24 SQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGMMLSVW 83 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 W+L L ++AA + + + WR ++ + G+CW + + Sbjct: 84 LHAVAAGAWTLGVLCIHAAIVRNCSNFLADQPSLAATRRWRTRFVLLDLLYGVCWMAILI 143 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 L ++ +L+ +++S++ LP A PV VA++ +S + Sbjct: 144 HPALAEVSGTLMMF---LMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LAG A +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 201 YLLAGFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKSRFLA MSHELRTPLNAILGFSEV++ E G YKEY DIH SG HLLNLIN Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E A++L+ ++ +C +L+LRA + I I + + + +WADE+ Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRASSRGITIHEVFEQKMPRLWADER 380 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV+LNLLSNA+KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQ Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GS +IKSAEQG GLGLPIA++++ HGG F ++SK+R G EVI P RV++ + + Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500 Query: 487 EST 489 E+ Sbjct: 501 EAP 503 >gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. BTAi1] gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 532 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 195/483 (40%), Positives = 284/483 (58%), Gaps = 3/483 (0%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWF 66 ++ + + D L ++ FDRE++ + ++ S I+ L V+ + + + Sbjct: 24 SQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGLMLSVW 83 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 W+ L ++AA + + + WR ++ + G+CW + + Sbjct: 84 LHALAAGAWTCGVLCIHAAIVRNCSNFLADQPSMAATRRWRTRFVLLDLLYGVCWMAILI 143 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 L ++ +L+ +++S++ LP A PV VA++ +S + Sbjct: 144 HPALAEVSGTLMMF---LMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA A +F + + L + + L +AEKD LI ELE AK++SDE R RAE N Sbjct: 201 YLLAAFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKSRFLA MSHELRTPLNAILGFSEV++ E G YKEY DIH SG HLLNLIN Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSRIEAGRYEL+E A++L+ +V +C +L+LRA + + I + + ++ +WADE+ Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGLTIHEVFEQNMPRLWADER 380 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV+LNLLSNA+KFT GG + + GWT+ GQY+S+KD G GI E EIP VL SFGQ Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GS +IKSAEQG GLGLPIA++++ HGG F ++SK+R G EVI P RV++ + + Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500 Query: 487 EST 489 E+ Sbjct: 501 EAP 503 >gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 506 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 229/480 (47%), Positives = 315/480 (65%), Gaps = 1/480 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R + ++ DV + T D L + +DFDRE++ LH ++ + ++PL VL +A Sbjct: 16 RRKPHRNSDVARAVRKTRDRLSQQAG-NLDFDRELLKLHARAMTSGAVVIPLLVLAIAAA 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +W+L TL Y + + +++ ++ R LVG GL W Sbjct: 75 GRLAGVGNEIGLWALFTLTCYTIVVFMARRIERTEASELNPLQARREFLVGHFLCGLGWA 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + G + L + K+ LL A++ +A+ L A+ +F V + Sbjct: 135 WFVWLGCGACAVDQLHVVKAVVLLFAMAGTAIMASSLRGALLATFAVPVALYAYAGAKLW 194 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 L+ +AG+L +L FF Y+ HL S++ +LS ++EKD LIAELE AKS+SDE R+RA Sbjct: 195 MPLEAIMAGLLVLSLPFFAYVARHLNDSSLMMLSFRSEKDALIAELETAKSMSDEARRRA 254 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GP++N TY++Y D+H SGQHLL Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAHDVHDSGQHLL 314 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAGRY+L+E + L++IV +C M++L+A+ K+I + Q + +L ++ Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVIQDFEQTLPRLF 374 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 375 ADERALRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISIKDNGPGIPEDEIPVVLS 434 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+ +P Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494 >gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 511 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 206/480 (42%), Positives = 287/480 (59%), Gaps = 5/480 (1%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 + V I + L + + FD E++ + + L F +A T++ Sbjct: 22 RRLGVAREIRSAREKLTSQTGLERAFDYELLRHYAQYRVGAGIPLAGFAAALAAAATFWI 81 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 P+ W+L + N +L ++ + +D + WR LVG++ L W + + Sbjct: 82 APPVAAAWALGVFLMITLNTTLSRRFLRADPATIPLARWRRRFLVGEVLQSLSWAAMIGL 141 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 L L+IA +++ + +P A + P+ +A ++ A S + + Sbjct: 142 GTTGGWTFALF-----GLVIASAVTTMLAATVPLAAVAALVPLALATASLAAFSRGMDLL 196 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L M A FF ++ L+ S V L +AEKD + ELE AK+ SDE R+RAEE NL Sbjct: 197 MLVVMAGGAQVFFLGLSRRLYTSTVGALRSRAEKDAVFGELEQAKANSDEARRRAEEANL 256 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKSRFLA+MSHELRTPLNAILGFSEV++ E G +Y+EY DIH SG HLLNLINE Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAPSYREYSHDIHDSGMHLLNLINE 316 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSRIEAGRYEL+E + L +V EC M+ LRA+ KN +D SL +WADE+ Sbjct: 317 ILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKAKNQTFHDLVDGSLPRLWADERA 376 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ++LNLLSNAVKFT GG + + VGWT+ GQY+S+KD+GPGI E E+ TVL+SFG+G Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYVSVKDSGPGIPEDELGTVLSSFGRG 436 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S+AIK+AEQG GLGLPI + ++ HGGQF + SK REG EV+ LP +RV++ +P + E Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREGTEVVVTLPASRVMDTLPPVDVE 496 >gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 894] Length = 468 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 282/467 (60%), Positives = 353/467 (75%), Gaps = 3/467 (0%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91 FDR+++ ++V S+ + + I+PLFV+++ +G +FTQN W+L+TL +A N+ L + Sbjct: 2 SFDRDVLKMYVTSMLQGATIMPLFVVIITALGVYFTQNTQLLFWALLTLTCHAGNILLAR 61 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + +I WR LL+GQ +G CW + L + P +YK ATLLIALS+ Sbjct: 62 RARRQEITSENARKWRRLLLLGQFLLGCCWAIFALQGCDSCEPSSFILYKGATLLIALSV 121 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 +A+SNFML AV ++F P ++AL+ ++ +S +L+ISL G T + FF YI+ LFKSN Sbjct: 122 TAMSNFMLTPAVLVAFAPAILALAAKSGLSRDLLEISLTGAFTTTVVFFNYISDRLFKSN 181 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +KILS Q+EKDDLIAELEVAKS+SDE R+RAEE NLAKSRFLASMSHELRTPLNAILGFS Sbjct: 182 LKILSYQSEKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFS 241 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ E MGPL N TYKEY GDIHRSGQHLL+LINEILDLSRIEAG+YELSE AISL+DI Sbjct: 242 EVMSAEVMGPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDI 301 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +CI M+QLRA+ KNI I + + L ++WADEK MRQV+LNLLSNAVKFT GG +HV Sbjct: 302 TEDCIGMVQLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHV 361 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 VGWT+G GQYISIKDNGPGI E EIP VL++FGQGSIAIKSAEQG GLGLPI Q+I+A Sbjct: 362 KVGWTAGGGQYISIKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAK 421 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHE-STQYKCYA 495 H GQFL++SKLREG EVIAILP RVL +P E+ H + + + +A Sbjct: 422 HDGQFLLKSKLREGTEVIAILPAKRVLQSLPAVEEAHAVARKRRSFA 468 >gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 510 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 253/492 (51%), Positives = 338/492 (68%), Gaps = 2/492 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RSR +K + + T + L FDRE++ LH+ ++ + + P+ V+L A Sbjct: 15 RSRAHKNAALVKTVRTTRERLQHGREIPPGFDREMVLLHINTVLQGAAAAPVLVMLTAVA 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G WF Q W+L + YA + ++ + W++ L+ IGLCW Sbjct: 75 GLWFDQAVWLLPWALCIMTAYALLVLFARRTSRAQSDDNAATRWQVRFLLIYALIGLCWA 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + + + + + T YK+A LLIAL+ +A++ F L +A++L PVV+AL+ + +S Sbjct: 135 VFSYQDCTSCQGDTFTFYKAAVLLIALAATAMATFALRFAIYLVVCPVVIALALRTGISR 194 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + D S M+ + F +++ L +N+K+L Q EKDDLIAELEVAKS+SDE R+RA Sbjct: 195 DLNDFSTLAMICASSLLFIFMSQRLRNTNLKMLGFQTEKDDLIAELEVAKSVSDEARRRA 254 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GP+ NE+YKEY+GDIHRSGQHLL Sbjct: 255 EESNLAKSRFLASMSHELRTPLNAILGFSEVMSGEVLGPVGNESYKEYVGDIHRSGQHLL 314 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 NLINEILDLSRIEAGRY+L+ESA++L DI ++CI ++QL+A+ K+I I + + L VW Sbjct: 315 NLINEILDLSRIEAGRYDLNESALALSDIAQDCIGLIQLKARSKSITINEAFEEDLPMVW 374 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADEK +RQV+LNLLSNAVKFT GG + V +GWT+G GQYI+IKDNGPGIAE EIP VL+ Sbjct: 375 ADEKSIRQVVLNLLSNAVKFTPSGGEIRVKLGWTAGGGQYIAIKDNGPGIAEEEIPVVLS 434 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGS+AIKSAEQG GLGLPI Q+I+A HGG+F+++SKLREG E IAILP RVL + Sbjct: 435 AFGQGSVAIKSAEQGTGLGLPIVQAILAKHGGEFVLKSKLREGTEGIAILPRKRVLESMA 494 Query: 483 EDN--HESTQYK 492 +TQ K Sbjct: 495 PVEGLPRATQKK 506 >gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium etli IE4771] Length = 570 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 273/437 (62%), Positives = 332/437 (75%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 S+ + + I+PLF++++ +G +FTQ+ W+L+TL +A N+ L ++ +I Sbjct: 2 SMLQGATIMPLFIVIITALGVYFTQDTRLLFWALLTLTCHAGNILLARRARRQEITAESA 61 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 WR LL GQ +G CW + L T P +YK ATLLIALS++A+SNFML AV Sbjct: 62 RKWRRLLLSGQFLVGCCWAVFALQGCDTCEPSSFILYKGATLLIALSVTAMSNFMLTPAV 121 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 ++F P V+AL ++ +S +L+ISL G+ L FF YI+ LFKSN++ILS Q+EKDD Sbjct: 122 LVAFAPAVLALGAKSGLSRDLLEISLTGLFTATLVFFNYISDRLFKSNLRILSYQSEKDD 181 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LIAELEVAKS+SDE R+RAEE NLAKSRFLASMSHELRTPLNAILGFSEV+ E MGPL Sbjct: 182 LIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLA 241 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 N TYKEY GDIHRSGQHLL+LINEILDLSRIEAG+YELSE AISL+DI +CI M+QLRA Sbjct: 242 NPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRA 301 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + KNI I + + L ++WADEK MRQV+LNLLSNAVKFT GG +HV VGWT+G GQYI Sbjct: 302 RAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI 361 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 SIKDNGPGI E EIP VL++FGQGSIAIKSAEQG GLGLPI Q+I+A H GQFL++SKLR Sbjct: 362 SIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLR 421 Query: 464 EGVEVIAILPNTRVLNF 480 EG EVIAILP RVL Sbjct: 422 EGTEVIAILPAKRVLQS 438 >gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 225/480 (46%), Positives = 307/480 (63%), Gaps = 1/480 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R ++++ DV + T D L + DFDRE++ LH ++ + +PL VL +A Sbjct: 16 RRKRHRNSDVARAVRKTRDRLSQQAG-NPDFDRELLKLHARAMTSGAIAIPLLVLAIAAG 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +W+L TL Y + +++ ++ R L+G GL W Sbjct: 75 GRLAGIGNEIGLWALFTLTCYTIVAFMARRIERTEASELNPLQARREFLIGHFLCGLGWA 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + + I K+ LL A++ +A+ L A+ +F V + Sbjct: 135 WFVWLGCSVCEVDPFHIVKAVVLLFAMAATAVMTSSLRGALLATFAVPVALYAYAGAKLW 194 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ +A +L +L F Y+ HL S++ +LS ++EKD LIAELE AKS+SDE R+RA Sbjct: 195 MPVEAIMAALLVVSLPFLAYVARHLNHSSLMMLSFRSEKDALIAELETAKSMSDEARRRA 254 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GP++N TY++Y D+H SGQHLL Sbjct: 255 EDANLAKSRFLASMSHELRTPLNAILGFSEVMSNEVLGPMSNPTYRDYAHDVHESGQHLL 314 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LINEILDLSRIEAGRY+L+E + L+ IV +C M++LRA+ K+I + Q + L ++ Sbjct: 315 DLINEILDLSRIEAGRYQLNEEPVMLLGIVEDCCHMMELRARNKDIRVVQDFEHELPRLF 374 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQ+ LNLLSNA+KFTA GG + V VGWT+G GQYISIKDNGPGI E EIP VL+ Sbjct: 375 ADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYISIKDNGPGIPEDEIPIVLS 434 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +FGQGSIAIKSAEQG GLGLPI Q ++A HGG+F + SKLREG E IAI P +RV+ +P Sbjct: 435 AFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAIAIFPLSRVMEELP 494 >gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 513 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 201/475 (42%), Positives = 274/475 (57%), Gaps = 5/475 (1%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 K + + + + L + FD E++ L+ + L L L VA + + Sbjct: 22 KRRGIAREMRSARERLTSTSGLERAFDYELLRLYAQYRVGAGIPLLLLALGVAGASSIWV 81 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 +W+ L A L L ++ + + + W + + L W +L LV Sbjct: 82 APVTVAVWAAGALLATALMLVLSRRFLRQAPESLPLKRWGRLFVAAEFGQSLAWAMLLLV 141 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 L L+I +++ + +P A P+ +A + + S + + Sbjct: 142 GVPGAQTFALF-----GLVIVAAVTTMLAATVPVAALSGLAPLTLAALSLLVFSRDMDTM 196 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L M + FF + L+ S V L +AEKD + AELE AK+ SDE R+RAEE NL Sbjct: 197 LLVAMTVASQLFFAGLARRLYASAVGTLQSRAEKDAIFAELEQAKANSDEARRRAEEANL 256 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKSRFLA+MSHELRTPLNAILGFSEV++ E G Y+EY DIH SG HLLNLINE Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPAYREYATDIHDSGMHLLNLINE 316 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSRIEAGRY+LSE A+ L V EC M+ LRA+ K ID SL +WADE+ Sbjct: 317 ILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSKGQTFASLIDDSLPRLWADERA 376 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ++LNLLSNAVKFT GG + + VGWTS GQY+S+KD+GPGI E E+ TV++SFG+G Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRG 436 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 S+AIK+AEQG GLGLPI + ++ HGG F ++SK REG EVI P +R ++ +P Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 491 >gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] Length = 513 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 198/475 (41%), Positives = 275/475 (57%), Gaps = 5/475 (1%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 K + + + + L + FD E++ L+ + L + L+VA + + Sbjct: 22 KRRGIAREMRSARERLTSTSGLERAFDTELLRLYAQYRVGAGIPLLILALMVAGASSIWV 81 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 +W+ +A L L ++ + + + W + + W +L LV Sbjct: 82 PAVTAAIWAAGAIAATTLMLLLSRRFLRQAPESLSLKHWGRAFVAAEFGQSAAWAMLLLV 141 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 L L+I +++ + +P A P+++A + I S + + Sbjct: 142 GVPEARTFALF-----GLVIVAAVTTMLAATVPVAALAGLVPLMLAALSLLIFSSDMDTM 196 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L M + FF + L+ S V L +AEKD + AELE AK+ SDE R+RAEE NL Sbjct: 197 LLVAMTVASQLFFAGLARRLYASAVGTLQSRAEKDAIFAELEQAKANSDEARRRAEEANL 256 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKSRFLA+MSHELRTPLNAILGFSEV++ E G Y+EY DIH SG HLLNLINE Sbjct: 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPAYREYATDIHDSGMHLLNLINE 316 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSRIEAGRY+L+E A+ L V EC M+ LRA+ K ID SL +WADE+ Sbjct: 317 ILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFASLIDDSLPRLWADERA 376 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ++LNLLSNAVKFT GG + + VGWTS GQY+S+KD+GPGI E E+ TV++SFG+G Sbjct: 377 LRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVKDSGPGIPEDELGTVMSSFGRG 436 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 S+AIK+AEQG GLGLPI + ++ HGG F ++SK REG EVI P +R ++ +P Sbjct: 437 SLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 491 >gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 514 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 190/487 (39%), Positives = 285/487 (58%), Gaps = 5/487 (1%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 RS++ + G+ + + L D ++ + + + + +VA + Sbjct: 18 RSQRRRR---GVKVREAREKLTTSDTGHRGCDVGLLRAYASARLHSAVPASALIAMVAGL 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 ++ + + +W+ + K++ V WR + + A GL W Sbjct: 75 TRYWMEGELEIVWTTFAFSTLLLCYGFAKRLDRLADADINVISWRSKFVAAEFAHGLVWA 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMS 181 + + P + A L++A + + + +P AV+ + P+ +A+ + S Sbjct: 135 SMAALLLQAGDPNAKA-FVLAMLMLAAAFNTMVAATIPIAVYATVTPISIAIVACLRVSS 193 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + +SL ++ A FF + + L + EKDDLI ELE AK+ SDE R+R Sbjct: 194 LEDTSLSLLALVGAAQVFFVVLAKRFHHVTRESLFFRIEKDDLIGELEQAKANSDEARRR 253 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AEE NLAKSRFLA+MSHELRTPLNAILGFSEV++ E G YK+Y DIH SGQHL Sbjct: 254 AEEANLAKSRFLATMSHELRTPLNAILGFSEVLKNELFGVHAVAAYKDYSNDIHSSGQHL 313 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L LINEILDLSR+EAGRYEL E ++SL +V +C +L +RAQ++ IE+ + +P L + Sbjct: 314 LMLINEILDLSRVEAGRYELKEESVSLATMVEDCRHLLTIRAQKRGIEMIEMTEPDLPRL 373 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 WADE+ +RQ++LNLL+NA+KFT GG+V + VGWTS GQY++I+D GPGI E EI V+ Sbjct: 374 WADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYVAIRDTGPGIPEEEIAVVM 433 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +SFG+G++A K+AE+G GLGLPI + ++ HGG F + SK+REG E I + P RV+N + Sbjct: 434 SSFGRGTLAQKNAEEGTGLGLPIVKGLIDLHGGLFKLASKVREGTEAIVVFPPERVMNAL 493 Query: 482 PEDNHES 488 P+ + E+ Sbjct: 494 PKFDDEA 500 >gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 553 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 186/485 (38%), Positives = 275/485 (56%), Gaps = 7/485 (1%) Query: 2 YRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVAN 61 ++ R + ++ + D L K +F+ E++T+ + +P + Sbjct: 25 HQPRAPRRSNLDDELRSFRDRLTHGTAHKPEFEYELLTMFARNETSAPFAMPALCFIFYI 84 Query: 62 IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121 ++ MW I L +++++ V WR + + GL Sbjct: 85 ASMFWASLMEATMWIAIVSISRVYMLDQCRRLLSIPRADVNVGQWRRHFVRVEAINGLAL 144 Query: 122 TLLTLV-------EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 L+ ++ ATL++ L+I + LP+ P+ +A+ Sbjct: 145 AAFALIGISNTPTAHSLPATFSSHVFIFATLMVVLAIRMTFSSTLPHVFLAGTVPMTLAV 204 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + M +LA M FF Y+ L + + ++ +AEKD LI+ELE A ++ Sbjct: 205 TGRLFMLGDPFYFALASMAIGIHVFFVYLAQGLHSTALAMVEYRAEKDSLISELEEASAI 264 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 SDE R+RAE N AKSRFLA+MSHELRTPLNAI+GFSEV+E E +GP+ ++TY+EY +I Sbjct: 265 SDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGSDTYREYAHNI 324 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + SG HLL +INEILDLSRIEAGRY+L E + L DI +C +++++A K + I + Sbjct: 325 YESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKADAKTLHIVEDF 384 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 P L VWAD + MRQ+ LNLLSNA+KFT GGR+ +TVG TS GQ+++I D GPGI + Sbjct: 385 APDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFVTISDTGPGIPK 444 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 EIP VL +FGQGS+A ++AE G GLGLPI Q++++ HGG F ++S+LR+G EV LP Sbjct: 445 DEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRKGTEVTVTLPR 504 Query: 475 TRVLN 479 RVL Sbjct: 505 QRVLQ 509 >gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 511 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 191/485 (39%), Positives = 296/485 (61%), Gaps = 2/485 (0%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 +++ +G + + L D E++ + E+ + +L++ + ++ Sbjct: 22 QKRRLGAKVREARERLTTSDTGHRACDLELLRAYAETRVESAISAVALILMMTMLSLYWV 81 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 + +WS++ + + K++ D V WR +V ++ G+ W + + Sbjct: 82 KTNAIFIWSVLAFSSLILCYGMAKRLAYYDDSKITVKRWRTKFVVTELVHGVVWAGVAGI 141 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLD 186 P I+ A +L++ + + + +P AV+ + P + + + Sbjct: 142 LLSCKDPNAR-IFVIAMMLLSAAFNTMVTATIPVAVYAAIVPTSLTIVFFIGFTGFGDTS 200 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 ++L M+A FF + + + +AEK++LI ELE AK+ SDE R+RAEE N Sbjct: 201 VALLAMVAVTQVFFFVLAKRFHQLASESQFFRAEKNELITELEQAKANSDEARRRAEEAN 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 LAKSRFLA+MSHELRTPLNAILGFSEV++ E GP N Y++Y DIH SGQHLL LIN Sbjct: 261 LAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHANPAYRDYSNDIHSSGQHLLMLIN 320 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 EILDLSR+EAGRYEL E ++SL+ + +EC +L +RAQ+++I + + ++PSL +WADE+ Sbjct: 321 EILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQKRDIRMIEVVEPSLPRIWADER 380 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQVILNLL+NA+KFT GG+V + VGWTS GQYI+IKDNGPGI E EI V++SFG+ Sbjct: 381 AVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYIAIKDNGPGIPEDEIAVVMSSFGR 440 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G +A K+A++G GLGLPI + ++ HGGQF+++SK+REG + I + P RV+N +P+ + Sbjct: 441 GMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVREGTDAIVVFPAQRVMNALPKFDT 500 Query: 487 ESTQY 491 + Q+ Sbjct: 501 PADQH 505 >gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 501 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 216/480 (45%), Positives = 312/480 (65%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R R + D+ + + L + +F+RE++ H ++ + +LPL V+L Sbjct: 16 RRRATRNGDLTRTLKAARERLSARGGLQPNFERELLVQHAAAIQAAAIVLPLPVILTGFG 75 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 + FT +W+ L + A + + ++ ++ + W L G +A GL W Sbjct: 76 LSIFTGPLPAILWTGFALLGHFALVVVSRRFPADNLTRAGITRWSRIFLAGHVAAGLSWA 135 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L + P +++ + +A+++ A+ + L V L+F P ++ L + + Sbjct: 136 YLATLACAECQPLRFELFQFTVIFLAIAMIAMVSSTLRAVVPLTFLPTILVLGYGIVTTA 195 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + ++ G+L A+ FF ++ L ++++ L Q+EKD+LIAELE+AK +SDE R RA Sbjct: 196 QPMASAMYGVLIGAVPFFAFVAEMLRRASIARLKHQSEKDELIAELEMAKIMSDEARSRA 255 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLA+MSHELRTPLNAILGFSEV+ E +GP+ NE+YK+YI DIH SGQHLL Sbjct: 256 EEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGNESYKDYIADIHASGQHLL 315 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 LINEILDLSR+EAGRY LSE A+ ++ I R+C+ ++++A+ K++ I + + L ++W Sbjct: 316 GLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAEAKDLVIGAEFEADLPAMW 375 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQ+ILNLLSNAVKFT GG + + VGWT+G GQY+++KDNGPGI E EIP VL+ Sbjct: 376 ADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLAVKDNGPGIPEEEIPIVLS 435 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 SFGQGSIAIKSAEQG GLGLPI Q++M H G F +RS+LREG E IAI PN+RVL +P Sbjct: 436 SFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRSRLREGTEAIAIFPNSRVLEVMP 495 >gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] Length = 463 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 192/453 (42%), Positives = 274/453 (60%), Gaps = 1/453 (0%) Query: 41 HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100 V++ V+ +P+ ++ A I + + + W + L ++ + K++ S + Sbjct: 2 FVKNRLSVAYAMPMIAIVAATISSVWLPVEVAGGWLVAMLLAHSIIILSTKRMEKSLSQE 61 Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 G + R L G + G+ W + + T +++ AT+LI ++++ + + LP Sbjct: 62 GNLRSIRRELFAGDMLYGIVWAIFFISNLQFNTDYGFGVFQFATMLIVIAMATMLSSPLP 121 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 A+ + P+ AL + ++ M A FF ++ L S + +L +AE Sbjct: 122 GALLAATAPITGALIFSFWQYDSMPHYAMGLMAIGAQVFFYILSKQLHTSALTLLEYRAE 181 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 KD LI+E+E ++S E R+RAEE NLAK+RFLA+MSHELRTPLNAILGFSEV++ E +G Sbjct: 182 KDHLISEMEQVNAISQEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLG 241 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P++N+TY +Y DI++SGQHLLNLINEILDLSRIEAGRYEL E + L D+ C M+ Sbjct: 242 PMHNQTYLDYSKDINQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMH 301 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +RA KNIEI + + LS VWADEK +RQ++LNLL+NAVKFT G + + VG G Sbjct: 302 MRAAAKNIEIHEVYEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGG 361 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 QYIS+ D G GI E EIP VL +FGQG+ AI+ AEQG GLGL I Q++ H G+F + S Sbjct: 362 QYISVSDTGAGIPEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLAS 421 Query: 461 KLREGVEVIAILPNTRVLNFI-PEDNHESTQYK 492 KLREG + LP RVL+ I P + T K Sbjct: 422 KLREGTQATISLPAKRVLSHIDPIPTPDPTTGK 454 >gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 505 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 209/479 (43%), Positives = 294/479 (61%), Gaps = 2/479 (0%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R++ ++ DV + T D L + FDRE++ +H ++ +P + +LL+ Sbjct: 16 RTKPHRNSDVAKAVRHTRDQLSRKAG-NRSFDREMLKIHARTIISSAPAVLFVLLLIGAA 74 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 G +W ++ A Y A + + I + + L+ G+ W Sbjct: 75 GYAVGPAREMAIWGMLAAAGYTALYLFARYIDKRSIDQIDARKVHVQFLLLHFFSGISWI 134 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L E + + + LL+ ++ +AL L AV +F V + + Sbjct: 135 YLVSFECRCGFLNFS-FFVAIVLLMMIAATALVCSSLRGAVLATFGLPVAIHALLHLEFP 193 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ + +L +L FF ++ +H ++ + +LS ++E + LIAELE AK++SDE R RA Sbjct: 194 LGVEPVMTLLLVLSLPFFGHVAHHRNQAAISLLSFRSENESLIAELETAKAVSDEARHRA 253 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE NLAKSRFLASMSHELRTPLNAILGFSEV+ E +GP+ N TY+EY D+H+SGQHLL Sbjct: 254 EEANLAKSRFLASMSHELRTPLNAILGFSEVMAKEVLGPVQNVTYREYAKDVHQSGQHLL 313 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 LINEILDLSRIEAGRY+L+E ++L DIV EC M+ L+ + K+I++ Q+ +PSL ++ Sbjct: 314 ELINEILDLSRIEAGRYQLNEEPLALADIVHECCRMMDLKLKAKDIKLVQQFEPSLLNLM 373 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ +RQ+ LNLLSNAVKFT GG + V VGWTSG GQYISI DNGPGI+E E+P VL+ Sbjct: 374 ADERAVRQISLNLLSNAVKFTPSGGEIRVRVGWTSGGGQYISICDNGPGISEEEMPLVLS 433 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +FGQGS+AIKSAEQG GLGLPI Q + HGG ++SKLREG I P +RV+ Sbjct: 434 AFGQGSVAIKSAEQGTGLGLPIVQGLTHLHGGLLRLKSKLREGTVATVIFPRSRVVEEA 492 >gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 508 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 179/484 (36%), Positives = 265/484 (54%), Gaps = 2/484 (0%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 M +R + + S K DF +++ + V + + +P+ + VA Sbjct: 1 MSTARSLRWRRFKQKTSIAAPQQSNSSAVKHDFAYDLLIMFVRNETVAALTVPILAIFVA 60 Query: 61 N-IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + W T+ +W L+L ++ + ++ WR L + G+ Sbjct: 61 ATMLNWATEPRQLLLWLATIFITEGILLALCRQFKRQPRETVDLVQWRRNLAAAEFLYGV 120 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 CW + P + + A L + +I + + + PV AL+ + + Sbjct: 121 CWAAVA-FTPFVVQSQAAFFFLFAALTVVTAIRMMFAASVMQILHAGTAPVTGALALRFL 179 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 M+ +LA + +F ++ +L ++ + +L +AEKD LI ELE AK+ SDE R Sbjct: 180 MTGEPFYWALAVVAVGIHFYFVFLVKNLQRTALSMLDYRAEKDRLIEELERAKAASDEAR 239 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 RAE N+AKS+FLA+MSHELRTPLNAI+GFSE+I+ E +GP++NE Y+ Y DIH SG Sbjct: 240 VRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDNENYRSYAADIHESGS 299 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LINEILDLSRIEAGRYEL+E I + E + ++++ A +KN+ + P + Sbjct: 300 HLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAHQKNLRVVTDFRPDMP 359 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ADE+ +RQ+ LNLLSNA+KFT G + V G +S++DNGPGI E EI Sbjct: 360 RIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLSVRDNGPGIPEEEISQ 419 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 VL +FGQGS+A+K+ E G GLGLPI + HGG+F +RSKL G E ILP RVL Sbjct: 420 VLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRSKLGVGTEASLILPKARVLP 479 Query: 480 FIPE 483 +P+ Sbjct: 480 AVPQ 483 >gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 507 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 208/487 (42%), Positives = 297/487 (60%), Gaps = 7/487 (1%) Query: 3 RSRKNKEKDVG-LLISPTGDHLGLEYPSKMDF-DREIITLHVESLFRVSPILPLFVLLVA 60 R+RK + K G ++ +L F + E++ H L S ILP V+L Sbjct: 16 RARKPRSKHAGSKVVRSARQNLKRHSRRNASFIEAELLVQHAAQLRAASIILPAPVILAG 75 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW-----LLVGQI 115 + FT + W+L TL Y + L ++ + L G Sbjct: 76 FGLSIFTGATVAAAWTLATLGAYLIIVILARRADTGTQESDGFTKAPHIAHALPFLAGHT 135 Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 GLCW+ L +E T ++ A L++A++++A+ + L + V ++F P+VV LS Sbjct: 136 FAGLCWSALAFLECPGCTAIRFELFHFAALVLAIAMTAMISSTLRFVVLIAFSPLVVGLS 195 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 A + + +++ G++ A+ FF ++ L + V + QAEKD+LI+ELE ++ LS Sbjct: 196 LDAFANPDKMSVAMQGVVIGAVPFFAFVAEALRRGAVARIRHQAEKDELISELERSRILS 255 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 DE R+RAE+ N AKS+FLA+MSHELRTPLNAILGFSEV+ E GPL + YKEY+ DIH Sbjct: 256 DEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGSPNYKEYLTDIH 315 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+HLL +INEILDLSR+EAG+Y L+E A+ L I +C ++LRA++K I I + Sbjct: 316 SSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAEDKRIAIQMHFE 375 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 L ++W DE+ +RQ++LNLLSNAVKFT G + + VGWT+G GQY+ + DNG GI + Sbjct: 376 EGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYVGVSDNGAGIPQD 435 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 EIPTVL SFGQGS AIK+AEQG GLGLPI Q+++ H GQF + S+ +G +VIAI P + Sbjct: 436 EIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGKGTDVIAIFPQS 495 Query: 476 RVLNFIP 482 RVL +P Sbjct: 496 RVLEVMP 502 >gi|217977515|ref|YP_002361662.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217502891|gb|ACK50300.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 518 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 187/463 (40%), Positives = 267/463 (57%), Gaps = 2/463 (0%) Query: 19 TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI 78 + + DFD ++ L + + + + A I + + W I Sbjct: 32 AAERIEAPTFDPRDFDAALLALFAKGRRSSAVTMATLSAIFAAIALTWIEVDAVVTWLCI 91 Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 +LA + ++ D+ E WR + + G + LL + P L Sbjct: 92 SLAAQVLTQLIARRFPQQDLAHAEARRWRRDFIAAETIQGAIFALLVALVGHAEDPAALA 151 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TAL 197 LL+A +++A + +P A PV +A+ + + +L A Sbjct: 152 CAVVMGLLVA-AMNATISPSIPAAAVGGMAPVALAMLSLLGAPHLADGAAQMIVLGFGAQ 210 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F + L+ S ++ LS QAEKDDLIAELE +K+ SD R+RAEE NLAKS FLA+MS Sbjct: 211 LCFLMLARKLYASALEALSFQAEKDDLIAELEQSKANSDLARRRAEEANLAKSHFLATMS 270 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAILGFSEV++ E G +YKEY DIH SG HLL LINEILDLSRIEAG Sbjct: 271 HELRTPLNAILGFSEVMKGELFGAHIVASYKEYSNDIHASGHHLLMLINEILDLSRIEAG 330 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 R EL E A++L IV +C +L LRA+++ + I + I+ L + ADE+ +RQ+ LNLLS Sbjct: 331 RLELKEEAVALDHIVEDCHHLLALRAKKRGVTITEAIEADLPRIRADERAVRQMTLNLLS 390 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT GGRV + +GWT+ GQY++++D+GPGI E EIP V++SFG+G++A K+AE+G Sbjct: 391 NAVKFTPPGGRVRIRIGWTAAGGQYLAVRDSGPGIPEEEIPIVMSSFGRGALARKNAEEG 450 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GLGLPI + ++ H G F+++S + EG E I I P +R++ Sbjct: 451 SGLGLPIVKGLVELHEGTFILKSNVGEGAEAIVIFPASRIIPP 493 >gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 594 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 179/460 (38%), Positives = 257/460 (55%), Gaps = 6/460 (1%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85 + F E+ + P+L L+A +G + + W L Sbjct: 66 SGSGEQTFALELAQTYARKRLASLPLLAGLDCLLAAVGLAWLDGALVAGWLGFNLLGLTL 125 Query: 86 NLSLGKKV----MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 L + E+ W+ ++G+ GL W L + LTI Sbjct: 126 VYHLLTRFLTPSDVHCPTPSELKTWQTGFVLGEGLHGLVWGLFIGLIVEAGGEPALTIGL 185 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALST-QAIMSMHVLDISLAGMLATALSFF 200 L I + + +P VF P+ A++ + + + LAG+ + L +F Sbjct: 186 VFALAIG-ATNLRLTAPIPACVFGPLLPMATAIAIISRLTIVSQQAMPLAGLASAVLLYF 244 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + ++ L+ Q EKD+LI ELE A+ SD R+RAEE NLAKSRFLA+MSHEL Sbjct: 245 LVTAQKIRAGVLEKLTIQNEKDELITELEQARVNSDLARRRAEEANLAKSRFLATMSHEL 304 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAILGFSEV++ E G +YK+Y DIH SGQHLL LINEILDLSRIEAG E Sbjct: 305 RTPLNAILGFSEVMKGELFGAHVISSYKDYSNDIHASGQHLLTLINEILDLSRIEAGHLE 364 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L + ++L +V +C +L L+A+++ + I + ++P L + ADE+ +RQV LNLL+NAV Sbjct: 365 LRDDCVALAHVVDDCRHLLALKAKKRGLTIEEHVEPDLPRLRADERALRQVALNLLTNAV 424 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG + + +GWT+ GQY+SI D+GPGI E E+P V++SFG+G++A K+A +G GL Sbjct: 425 KFTPPGGWIKIKIGWTANGGQYVSIHDSGPGIPEEEMPIVMSSFGRGTLAQKNALEGSGL 484 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GLPI + ++ H G F ++S+L EG E I +LP RVL Sbjct: 485 GLPIVKGLVDLHNGTFSLKSRLHEGTEAIVVLPAERVLAA 524 >gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] Length = 526 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 196/488 (40%), Positives = 290/488 (59%) Query: 5 RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64 + + V G+H + FD +++ H + ++ + + Sbjct: 26 QSKSGRAVKAARQGLGNHTTIRDAHAASFDHDLLVRHAHVQQQTFVMVISLLAIATYTTH 85 Query: 65 WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 + + W + + A+ N KK + + + W Q A G+ W L Sbjct: 86 FGVDLMVLGGWLIGSTALAILNQLYAKKFLALEKDKTDRKKWLRIFTAFQFAGGVLWAGL 145 Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 P T +I ++ S+S +++ + + V + P++ + Q +M V Sbjct: 146 FAHLPVLETSGAFSIMCFLGAMVVTSLSFIASRNISWGVIAAAAPLLTVIVLQLMMVSTV 205 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + LA ++ +L+F+ ++ + + +S +AE+D L+ ELE ++ +S+E R+RAEE Sbjct: 206 PALGLAMLMIVSLAFYHFVGRLIRDGQLDAISSRAERDQLVMELEASRGISEEARRRAEE 265 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 NLAKSRFLA+MSHELRTPLNAILGFSE++ E MGP++N+ YKEY+ DIHRSG HLL L Sbjct: 266 ANLAKSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKL 325 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 INEILDLSRIEAGRYEL+E + L V E M++L+A +K +++ ++ P + +VWAD Sbjct: 326 INEILDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWAD 385 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + +RQ++LNLLSNA+KFT GG + + GWTSG GQYI+I+D GPGI E EIP VL+SF Sbjct: 386 ARAVRQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSF 445 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GQGSIAIKSAEQG GLGLPI Q++M H G+F +RSKLR G EV A P +RV+ D Sbjct: 446 GQGSIAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFPRSRVMPTAQAD 505 Query: 485 NHESTQYK 492 +E+ + + Sbjct: 506 QNENAKVR 513 >gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 554 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 112/530 (21%), Positives = 192/530 (36%), Gaps = 82/530 (15%) Query: 31 MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWSLITLAVYAAN 86 + I V+ L+R++P+ + L+ A + + W + V Sbjct: 19 ALYKELIFAEQVKQLYRLAPLGMVATLVNALLVFFVMKDVMPRRFLIFWLFGIVLVTLLR 78 Query: 87 LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 LG + + + +W L+G IG W + + + +L Sbjct: 79 GLLGFQYAKHPPEPAQARLWANRFLIGLAVIGAAWGSIGVFSFAEASMAHLVFISFVLGG 138 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A S + +A PV++ L ++ +A M I+ H Sbjct: 139 MAAGASTTFA-TVRHAYLAFSIPVLMPLIVHFLLIQDTFHSFMAAMTTLFGFLLWRISLH 197 Query: 207 LFKSNVKILSCQAEKD-------------------------------------------- 222 + N L E Sbjct: 198 NYTINRDSLLLSYENREMVETMKQAKERAEGLNSQLMEENAARLEAEAALRANQEQLEKL 257 Query: 223 ------DLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHE 259 DL++ E K +E ++++E N AK+ FLA+MSHE Sbjct: 258 VEVRTADLVSSNEQLKKEIEERKQYEKALLQTGERLAVAQRQSEAANRAKTEFLANMSHE 317 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPL LG ++ +G ++ + RS LL +I ++LD SR+EAG Sbjct: 318 MRTPLAGALGMIRLVLDMNIGA----EERQLLEMAKRSADSLLRIIADLLDFSRLEAGVM 373 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 + SL ++VR + ++ L A+EK + + +D ++ + DE +RQV++NLL N Sbjct: 374 TFEDKPFSLKEVVRSAVEVVSLVAEEKELHLSWSVDGAVPDQLSGDEGRLRQVLVNLLGN 433 Query: 379 AVKFTAIGG-RVHVT----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 AVKFT GG V + + R ++D G GI ++ + F Q ++ Sbjct: 434 AVKFTERGGIEVSIKTLEPLEAQGERYVEFYVRDTGVGIPADQLQRIFDRFTQVDSSLTR 493 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL + + I+ GG S + G +P PE Sbjct: 494 RHGGTGLGLALTRQIVEKMGGSIWAESVIGSGSTFHFTVPMVPSAAAGPE 543 >gi|253699184|ref|YP_003020373.1| histidine kinase [Geobacter sp. M21] gi|251774034|gb|ACT16615.1| histidine kinase [Geobacter sp. M21] Length = 550 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 112/534 (20%), Positives = 198/534 (37%), Gaps = 82/534 (15%) Query: 31 MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPIFPMWSLITLAVYAAN 86 + I V+ L+R++P+ + L+ A + + W + V Sbjct: 19 ALYKELIFAEQVKQLYRLAPLGMVATLVNALLVFFVMKDVMPRRFLIFWLFGIVLVTLLR 78 Query: 87 LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 LG + + + +W LVG +AIG W + + + E+ Sbjct: 79 GLLGFQYAKHQPEPAQARLWANRFLVGLLAIGAAWGSIGVFSFAEASMEHQVFIAFVLGG 138 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A S + +A PV+V L+ ++ + +A M I+ H Sbjct: 139 MAAGASTTFA-TVRHAYLAFSIPVLVPLAVHFVLIQDIFHYLMAAMTTLFGFLLWRISLH 197 Query: 207 LFKSNVKILSCQAEKD-------------------------------------------- 222 + N L E Sbjct: 198 NYSINRDSLLLSYENREMIETLKQAKERVEGLNSQLMEEITARLEAEAALRGNQEQLENL 257 Query: 223 ------DLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHE 259 DL++ E K +E ++++E N AK+ FLA+MSHE Sbjct: 258 VEVRTADLVSSNEQLKKEIEERKQYEQALLQAGERLAVAQRQSEAANRAKTEFLANMSHE 317 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPL LG ++ +G ++ + RS L+ +I ++LD SR+EAG Sbjct: 318 MRTPLAGALGMIRLVLDMNIGA----EERQLLEMAKRSADSLVRIIADLLDFSRLEAGVM 373 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 + L ++VR + ++ L A+EK + + ++ ++ + DE +RQV++NLL N Sbjct: 374 TFEDKPFLLKEVVRSAVEVVSLVAEEKGLSLSWAVNAAVPEQLRGDEGRLRQVLVNLLGN 433 Query: 379 AVKFTAIGG-RVHVT----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 AVKFT GG V + + + S++D G GI ++ + F Q ++ Sbjct: 434 AVKFTERGGIEVGIGTFEPLEAQGEQYVEFSVRDTGVGIPADQLERIFDRFTQVDSSLTR 493 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL + + I+ GG S + G +P PE + + Sbjct: 494 RHGGTGLGLALTRQIVEKMGGSIWAESVVGSGSTFHFTVPMVSNAAAGPERDSD 547 >gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 618 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 110/339 (32%), Positives = 173/339 (51%), Gaps = 16/339 (4%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------------LATALS 198 ++A L +A F + + +A I+S+ + A + T + Sbjct: 277 VTATVLSSLSWASFWALLALFLAFVVGYILSIKISKPITAIREISQKLSKGDFDIGTPID 336 Query: 199 FFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 L + ++ + E L +++ + + + AE N AKS FLA+MS Sbjct: 337 TRIIEMESLNDALIESANRLKELYQSLEQKVKERTAELEIAKIHAEAANRAKSEFLANMS 396 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN+I+GF+EV++ + G L NE EY+ DIH S +HLLNLIN+ILDLS+IE G Sbjct: 397 HELRTPLNSIIGFTEVLQDQLFGTL-NEKQLEYLKDIHDSAKHLLNLINDILDLSKIEEG 455 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376 + EL S + D+V +IM + +A + I++ +I + +V ADE+ ++QV+ NL+ Sbjct: 456 KTELELSEFRVSDVVNVSLIMFKEKASKHGIKLDAEISKEADITVTADERKIKQVLFNLV 515 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNAVKFT GG V +T I ++D G GI + + + F Q Q Sbjct: 516 SNAVKFTPDGGSVKITAERKED-MIEIVVEDTGIGIKKEDRDKLFQPFSQLETTYTKKYQ 574 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL +++S++ HGG+ S+ +G P Sbjct: 575 GTGLGLALSKSLVELHGGKIWCESEYGKGSRFGFSFPVK 613 >gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 732 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 3/251 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ E + AE N KS+FLA+MSHELRTPLN+I+GFS+V+ E G L N Sbjct: 482 ITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEAFGKL-N 540 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+Y +I+ SG HLL++IN+ILDLS+IEAG+ EL+ L +I+ E L+ + Sbjct: 541 EKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLVK 600 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K + + V+AD+ ++QV+ NLLSNA+KFT G++ + + IS Sbjct: 601 KKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDC-GEEEITIS 658 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D+G GI E + F Q QG GLGL + ++I+ HGGQ + S+ + Sbjct: 659 VSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVESEAGK 718 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 719 GSTFKFTLPLQ 729 >gi|154251517|ref|YP_001412341.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155467|gb|ABS62684.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 509 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 240/479 (50%), Gaps = 8/479 (1%) Query: 2 YRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVAN 61 ++ ++ + + ++ T G P E + + V+S P ++++ Sbjct: 24 HKQPAHQLRTLQSRLARTLPWRGNGEPLAAQIRLEQLRMFVDSQKLPVPYAFPALMILYA 83 Query: 62 IGTWFTQNPIFPMWSLITLAVYAANLSLGKK----VMNSDIKIGEVYVWRIWLLVGQIAI 117 + I W ++ + + L ++ + + + ++ +W L + Sbjct: 84 ACFY---QSIAWYWLVVPVVMLFGANWLNRRVIAKFLVAAPEGNDIAIWERRFLTVALCF 140 Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 + P +A LL+ L+ +AL A + PVV+A + Sbjct: 141 SISIASTVFFFWVPGDPVQQAFVLTA-LLVTLAPTALITSCYKPAFYARVLPVVLAAGLR 199 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + V +SLA +L + +T L + ++ + +K+ LI +L AK SD Sbjct: 200 LVSYGDVQHLSLAAVLLIFTALLAQLTSRLNGIILHSITLREDKNGLIEQLFKAKRESDA 259 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R RAEE N AKS FLA+MSHELRTPLNAI+GFSEV+ E G TYKEY DI+RS Sbjct: 260 ARARAEEANRAKSHFLANMSHELRTPLNAIIGFSEVMASEIFGKHGVPTYKEYANDINRS 319 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQHLL LIN++LDLSRIEAGR++++E + + + +C +L++RAQ + + I + Sbjct: 320 GQHLLGLINDVLDLSRIEAGRFQITEEEVDIAHLAEDCRRILEIRAQAQRVSITEDFADG 379 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V+ D + +RQ +NLL+NA+KF+ V + + + DNGPGIAE EI Sbjct: 380 LPIVYGDARALRQTWINLLTNAIKFSPPDSEVKMFARMEASGEMRFGVHDNGPGIAESEI 439 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 VL +F QG+ + +G GLGL I + ++A HGG+F ++S+L G + LP R Sbjct: 440 DKVLHAFTQGASGLAQPGKGSGLGLSIVKGLLAVHGGRFELKSQLGAGTQAECTLPPQR 498 >gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 1046 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 2/255 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + AEE N +KS FLA++SHELRTPLN+I+GFS+++ + G L N Sbjct: 480 ITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFGEL-N 538 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y+ +I SG+HLL LIN+ILDLS++EAG+ EL S S+ + E +L Q Sbjct: 539 EKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLFPLIQ 598 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K +E+ ++P +++ AD + Q++ NL+SNA+KFT GG+V V SG IS Sbjct: 599 AKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCK-ESGNRALIS 657 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + + F Q + G GLGL + + I+ H G + S + Sbjct: 658 VIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVESDPGK 717 Query: 465 GVEVIAILPNTRVLN 479 G LP + L Sbjct: 718 GSNFTFALPLRKPLE 732 >gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 995 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 5/260 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ + AE N AKS LA++SHELRTPL +I+GFS+VI +G L Sbjct: 739 RDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSIIGFSDVILKRKVGDL 798 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ Y+ IH+SGQHLL+LIN+ILDL++IE+G+ EL IS+ ++ + L Sbjct: 799 -NDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISIPALLNDLESKLYPF 857 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A +K + + +IDP++ ++ADE +RQ++ NL+ NA+KFT G V VTV + Q Sbjct: 858 ASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNK-GSVTVTVRQKNDAYQ- 915 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI E + + SF Q G GLGL + + ++ HGGQ + S+ Sbjct: 916 FSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLVEIHGGQIWVESEE 975 Query: 463 REGVEVIAILPNTRVLNFIP 482 +G +P+T+ + +P Sbjct: 976 SKGTTFTFTIPSTK--SELP 993 >gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 599 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 144/253 (56%), Gaps = 2/253 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++A++ +++ AE+ N KS FLA+MSHELRTPLN+I+G+S+++ G L+ Sbjct: 347 ITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSGNLDE 406 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K Y +I SG+HLL LIN ILD+S++EAG+ E ++L + + + I +++ A Sbjct: 407 KELK-YSHNILNSGEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVKPLAM 465 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K+I+I + +++ VW D +Q++ NLLSNA+KFT G V + + T IS Sbjct: 466 KKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLS-TDDGTAQIS 524 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI +I + F Q + + +G GLGL + + + H G+ + S++ Sbjct: 525 VADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVESEVGA 584 Query: 465 GVEVIAILPNTRV 477 G L V Sbjct: 585 GSTFTFTLSVKEV 597 >gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 456 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 94/254 (37%), Positives = 146/254 (57%), Gaps = 2/254 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ E + AE N AKS FLA+MSHELRTPLN+I+GFS+V+ E+ GPL Sbjct: 200 RDITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPL 259 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE K+Y ++ R+G+HLL++IN+IL +S IE G EL + + D + E ++ L Sbjct: 260 -NEYQKKYTSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILI 318 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A EK+I++ ID + ++ D +Q++ NL+ NA+KFT GG V + G S + Sbjct: 319 ASEKDIDLTCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIG-GKISDDLVH 377 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 IS+KD+G G++ + + F Q + G GLGL + + + HGG+ + S++ Sbjct: 378 ISVKDSGIGVSPEDQDKLFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEV 437 Query: 463 REGVEVIAILPNTR 476 +G I+P Sbjct: 438 GKGSTFTFIIPTKP 451 >gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 818 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 90/271 (33%), Positives = 147/271 (54%), Gaps = 3/271 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ L + + + N KS FLA+MSHELRTPLNAI+GF+EV++ Sbjct: 271 KLRSSYAMLEQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLK 330 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + G L N ++++ DIH SG+HLL +IN+ILDLS+IEAG+ EL + + D + + Sbjct: 331 DKLCGEL-NAEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDV 389 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +L+ A++K +++ I + + AD +Q++ NLLSN++KFT G + Sbjct: 390 YTILKGLAKKKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAI 449 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G+ Q +S+ D+G GI + V F Q + +G GLGL + + I+ HGG+ Sbjct: 450 VDGKMQ-VSVSDSGIGIKPEDREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGK 508 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI-PEDN 485 ++S+ +G +P T+ + PED Sbjct: 509 IWLKSEYGKGSTFYFTIPVTKSQRILHPEDE 539 >gi|293607366|ref|ZP_06689705.1| periplasmic sensor hybrid histidine kinase [Achromobacter piechaudii ATCC 43553] gi|292814210|gb|EFF73352.1| periplasmic sensor hybrid histidine kinase [Achromobacter piechaudii ATCC 43553] Length = 608 Score = 324 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 99/469 (21%), Positives = 178/469 (37%), Gaps = 20/469 (4%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT----QNPI 71 + PT P + I + +++L R P L+ A + Sbjct: 1 MQPTLGQTPSATPPSPAYGARIRQVQIDALRRSFPFALAGSLISACFSAYALRGVLPMHE 60 Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 W + TL V A L+ + W +LVG +A GL W L Sbjct: 61 VLAWIVATLLVGALRLAAMIAYDRHLTQPDAAARWVRRMLVGNLASGLLWGLPFAYWTLF 120 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 EY + + SN+ML ++ P + + ++L Sbjct: 121 VPLEYQLFFIVILFGLGTGAI-YSNYMLLPVMYAFEVPAFAPMFIALAAQPSAIHLALVT 179 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 L + + ++++ L E L+ ++ + AE +L KSR Sbjct: 180 GGLAYLVATLAFIHRMNRTHLDALRLGYENLALLEQVRQ-------EKIAAERSDLEKSR 232 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+ SH+LR P++A+ F ++ E + + +I + + L + +L+L Sbjct: 233 FLAAASHDLRQPVHAVNLFLGLLANEPLSRHG----HYLVDNIGSAMTAMGQLFDALLNL 288 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 SR++AG E +L ++ + +A+EK + + + P + +W+D + ++ Sbjct: 289 SRLDAGVIEPRWQGFALNPLLDQLRAEYAPQAREKGMSLRVR--PCAACIWSDPVLLERI 346 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NL+SNA+ GGRV + G + + DNG GI E V F Q Sbjct: 347 LRNLISNAITHA-TGGRVLIGCRRV-GGQLRVEVWDNGVGIPAAEQERVFWEFHQLGNPE 404 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + +G+GLGL I + G +RS+ +G + P Sbjct: 405 RDRSKGLGLGLAIVRRTARLLGHPLALRSQAGQGTVFMLTAPIADPAQA 453 >gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 625 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 99/254 (38%), Positives = 156/254 (61%), Gaps = 2/254 (0%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I++ + A+ + E +K AE+ N KS FLA+MSHELRTPLN+++GFS+++ E Sbjct: 368 ELFQDISQRKNAEENAIEAKKAAEQANQTKSEFLANMSHELRTPLNSVIGFSDILSKEVR 427 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L N++ K+Y+ +I +SG HLL+LIN+ILDLS+IEAG+ +L S+ L + + E I++ Sbjct: 428 GKL-NDSQKKYVSNITKSGSHLLSLINDILDLSKIEAGQKQLEYSSFDLHEALDEISILI 486 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +KNI++ + P S V+AD K +Q++ NLLSNA KFT G + + V Sbjct: 487 KPLISKKNIDLQMDLPPEDSRVYADRKKFKQIMYNLLSNASKFTPDKGTITI-VANQEKD 545 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D G GI E + T+ F Q A S +G GLGL +A+ ++ HGGQ ++ Sbjct: 546 KLKVAVQDTGMGIPEADQATIFEPFQQVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLK 605 Query: 460 SKLREGVEVIAILP 473 S++ G +P Sbjct: 606 SEVGMGSTFTFTIP 619 >gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 892 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 136/251 (54%), Gaps = 3/251 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E + + + + AE N AKS FL +MSHELRTPL AI+GFS+V+ G + Sbjct: 322 LSERKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFS- 380 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ +I SG+HLL LIN ILDLS+IEAG+ EL S+ ++ + + A Sbjct: 381 EQNKKFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALAL 440 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K+I + +D + V+AD +Q+I NL+SNA+KFT G V V+ T IS Sbjct: 441 KKDISMKYNVDSEIL-VYADRVRFKQIIYNLVSNAIKFTPDRGSVIVSALKTED-SVRIS 498 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+E + F Q +I +G GLGL + + + HGG+ S+ + Sbjct: 499 VSDTGIGISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGK 558 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 559 GSTFEFELPLK 569 >gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 606 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 108/433 (24%), Positives = 187/433 (43%), Gaps = 21/433 (4%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 LF + + V+ + +W P W + V A L L + ++ + Sbjct: 42 GLFSNFILAAILVVGTSRSLSWSLHIP----WLAAIVLVSGARLRLNLRFRREQPRLETL 97 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 WR +VG IA G+ W + V G + A +L+ L+ A + A Sbjct: 98 PRWRRAFVVGVIASGIVWGIAGWVYFGASDSTGRLLL--AMILMGLNAGAARSLASVPAS 155 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + + + + +LA + T F ++ E ++ Sbjct: 156 YRLYVLTTLGPILLRFATWPDGGWTLALITITYALFLINTMRLHHGDLRRLWQLIFENEE 215 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L+ + ++RA+ N AKS FLA+MSHE+RTP+N I+G +V+ ++ Sbjct: 216 LVGT-------LSQAKERADAANRAKSDFLATMSHEIRTPMNGIMGMLQVLHGSSLTV-- 266 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + + S + L+ L+N+ILD S+IE+G+ E + L + + + +L+ RA Sbjct: 267 --EQRAQVEIAGNSAESLMRLLNDILDFSKIESGKLEFESVSFDLKAALHDVVSLLRPRA 324 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGR 399 EK + + + +L V D ++QV+LNL NA+KFT G RV V+ T+ Sbjct: 325 AEKGLALELHLPDNLPDHVIGDSVRLKQVLLNLTGNAIKFTEQGEVALRVRVSQRDTTSA 384 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G G+ + + F QG ++ G GLGL I+Q + + GG+ +R Sbjct: 385 RVGFSVRDTGIGMDDATRQKLFQLFSQGDSSMNRRFGGTGLGLAISQRLAEHMGGKIEVR 444 Query: 460 SKLREGVEVIAIL 472 S +G E L Sbjct: 445 SSPGQGAEFSFEL 457 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 142/323 (43%), Gaps = 20/323 (6%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--------SNVKILSCQA 219 ++ + + + + Y Y + + + QA Sbjct: 724 AAARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQA 783 Query: 220 EKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 +K L A LE K + + + KS FLA+MSHE+RTP+N +LG +E++ Sbjct: 784 QKRQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLE 843 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + +E + IHRSG+ LL ++N+ILD S+IEAGR EL +L + + + I Sbjct: 844 MDLTK----EQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVI 899 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + RA K +E+ I+ V D +RQV+ NL+ NA+KFT G V V Sbjct: 900 TLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTER-GEVVVEAELE 958 Query: 397 SGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + IS++D G GI + + F Q + G GLGL I++ ++ Sbjct: 959 RLDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMM 1018 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG + S++ +G +P Sbjct: 1019 GGTIGVESEVGKGSTFTVRIPFR 1041 >gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 100/271 (36%), Positives = 153/271 (56%), Gaps = 10/271 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + AE+ N +KS FLA+MSHELRTPLN+I+GFS+VI E+ G L Sbjct: 109 RNITERKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSL 168 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE K++I ++ +G+HLLN+IN+IL S+IE G+ EL S + + + E +++ Sbjct: 169 -NELQKKFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPI 227 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A EKNIE+ ID + ++ AD Q+I NL++NA+KFT G +V + G S + Sbjct: 228 ASEKNIELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIR-GEISDDFVH 286 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 IS+KD+G GI+ + + T F Q + G GLGL I + + HGG+ + S++ Sbjct: 287 ISVKDSGIGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEV 346 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G +P PE S++ C Sbjct: 347 GKGSTFGFRMP------TYPEST--SSKIHC 369 >gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1028 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 3/263 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + AE + KS FLA+MSHELRTPLN+I+GFS+++ G L N Sbjct: 464 ITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFGEL-N 522 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +Y+ +I SG+HLL LIN+ILDLS++EAG+ +L S ++ + E L AQ Sbjct: 523 EKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLFPLAQ 582 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K++EI + P + AD + Q++ NL+SNA+KFT GGRV V SG S Sbjct: 583 AKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSVYCK-KSGSRALFS 641 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + + F Q + G GLGL + + I+ H G + S+L + Sbjct: 642 VTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVESELEK 701 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G + +P T+ P+ + + Sbjct: 702 GSTFMFTIPLTK-PPESPKADTK 723 >gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 721 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 103/450 (22%), Positives = 193/450 (42%), Gaps = 18/450 (4%) Query: 33 FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92 FD+ + + ++ I + + N + W + V G + Sbjct: 12 FDQFKLVIKNSTVSSFGNIA--VATFLTYLIVDALSNTLVFFWLAYMVLVSVFRTGYG-R 68 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +++ + ++ V + L W + + + I+ S Sbjct: 69 YIRTNVSLDTFKYFQKRYFVFILLTALGWGYASFALFVENDTTLQSFLVMSIAGISSSSV 128 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + + + Y + V+ L + S V ++ + +L L F H ++ Sbjct: 129 SSLSPVKSY-FYSFIIIVITPLFLKFATSYEVYGVAFSLILLLFLIFMIKSAKHYQEAIN 187 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 LS + LI E ++ ++ A+ N KS FLA+MSHE+RTP+N I+G + Sbjct: 188 DSLSLNYQNVGLIKE-------LNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTG 240 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ ++ + ++ + S + LL +IN+ILD S+IEAG+ EL+ ++ L+ + Sbjct: 241 LLLDTSL----KKEQRDLTLTVKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFL 296 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVH 390 + M+ AQ K + + IDP L + D +RQV++NLLSN +KFT G + Sbjct: 297 DGVMEMVASSAQSKGLNLAYFIDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLT 356 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V+ + + D G GI+E + +F Q + G GLGL I++ I++ Sbjct: 357 VSALDSDSNRLQFKVTDTGIGISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILS 416 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GG ++S L +G +P RV++ Sbjct: 417 LLGGHISVKSALGKGACFCFDIP-YRVMDS 445 >gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 542 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 188/399 (47%), Gaps = 5/399 (1%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAI-GLCWTL---LTLVEPGTWTPEYLTIYKSATLLIA 148 + G+ +WR +L + G+ + + +K ++ Sbjct: 9 FTQDFMPHGQCLLWRPEILWLFVISDGIITASYYSIPVALFYFVRRREDLEFKWMFVMFG 68 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 L I + + L + + ++ ++A + L Sbjct: 69 LFIFSCGSTHFLDIWTLWSPSYRFEGVVKFLTAIASASTAIAIWPLIPKAIALPSPSQLR 128 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +N+++ + + EL + + + E N AK++FL++MSHELRTPLN I+ Sbjct: 129 NANLEMTREMNGRKKVENELRTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVII 188 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+++++ + G L NE YIG+I+ SG+ LL+LIN++LD+S+I+AG EL +S+ Sbjct: 189 GYTDLLSEQLPGKL-NEKQLRYIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSI 247 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +++ + M+ + +K I++ I+P LS V AD + +Q+++NLL+NA+KFT GR Sbjct: 248 DELINGMVSMMSRQFVKKKIKVKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGR 307 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + G I ++D G GIAE +I + + F Q I G G+GL + + + Sbjct: 308 VEICAVSDGDSGVKIEVRDTGIGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRL 367 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + H G+ + SKL +G LP ++ + E Sbjct: 368 VELHDGKIGVESKLGKGSTFWFTLPLKKLPREKSSEQKE 406 >gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1034 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 151/246 (61%), Gaps = 2/246 (0%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +LE A ++E +AE N KS+FLA+MSHELRTPLN+++GFS+++ E G L N++ Sbjct: 790 QLEDAVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGEL-NDS 848 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+YI +I G+HLL+LIN+ILDLS+IEAG+ EL+ ++L + E ++ +AQ+K Sbjct: 849 QKKYISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKK 908 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +I++ + + AD+ ++Q+I NLLSNA+KFT G+V ++ G I++K Sbjct: 909 SIDLEISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVK 967 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E ++ + F Q + G GLGLP+ + + HGG+ L+ S++ +G Sbjct: 968 DTGIGIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGS 1027 Query: 467 EVIAIL 472 + Sbjct: 1028 VFTLLF 1033 >gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 763 Score = 319 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 146/249 (58%), Gaps = 2/249 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + + + AE N KS FLA+MSHELRTPLN+I+GFSE++ +T+G +NN Sbjct: 506 ITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINN 565 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI +I GQHLL+LINEILD+S++E+G+ EL ++ ++ + +I+L A Sbjct: 566 -KQERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAI 624 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 IEI ID LS + AD+ ++Q++ NLLSNA+KFT G + + + I Sbjct: 625 TNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEA-IFDDKLMQIC 683 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 IKDNG GI + I + F Q A QG GLGL + ++ + HGG + S++ + Sbjct: 684 IKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGK 743 Query: 465 GVEVIAILP 473 G +P Sbjct: 744 GSAFTFTIP 752 >gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 998 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 92/337 (27%), Positives = 149/337 (44%), Gaps = 8/337 (2%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 L + ++A+ + V A + A + + Sbjct: 395 LVVSVGLGFVVAILGGLYIGEFIRKLGQRLDPLVKAADAMAAGDLGLRIQDHEPDEIGEL 454 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 F ++ +L S + E+ ELE + D R AE N AKS FLA+M Sbjct: 455 ARAFNQMSANLSDSYAHLEQRVKERTQ---ELEASNQALDLARDAAEAANKAKSTFLANM 511 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNA++G+S+++ + + I+ +G+HLL LIN +LDLS+IEA Sbjct: 512 SHELRTPLNAVIGYSDMLMEDLEESDYLPD----LQKINSAGKHLLELINAVLDLSKIEA 567 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ EL ++ ++V+ +++ + + +I +L + AD +RQ +LNLL Sbjct: 568 GKMELYLEEFNINELVQGVAALVKPLMDKNHNRFALQIPDTLGKMTADATKVRQSLLNLL 627 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNA KFT G V + V + + I D G G++ ++ + F Q + Sbjct: 628 SNASKFTKA-GTVTLNVWIDDTQRVFFQISDTGIGMSPEQLDKLFQEFTQADNSTTRNYG 686 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ GG + S+ G LP Sbjct: 687 GTGLGLAISRRFCRMMGGDITVTSEPGVGSVFTIELP 723 >gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1375 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 146/323 (45%), Gaps = 18/323 (5%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV---KILSCQAEKD-----D 223 +L I + A+ F I ++ + L+ + E Sbjct: 785 ASLKLTIIPPFWKTLWFKGLLGILAIIMFFLIVRQRTRTVEKQKETLAKEVENRTADLNQ 844 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I E + + ++ R EE N AKS FLASMSHE+RTPLN+ILG +++++ + Sbjct: 845 EIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDL---- 900 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ EY+ SG+ LL +IN+ILD S+IEA +L + L+ + + A Sbjct: 901 SDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATAA 960 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398 +++E+ + P + V D +RQ++LN+L+NAVKFT+ G V + V + Sbjct: 961 SSRHVELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSS-GEVSIVVSRSPESNST 1019 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +I D G GIA ++ ++ F Q + G GLGL I++ + GG Sbjct: 1020 DNITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITA 1079 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S +G + LP R Sbjct: 1080 SSTPGKGSTFMVTLPLPRAPQAT 1102 >gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 736 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 143/255 (56%), Gaps = 2/255 (0%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +L A + + E R AEE N KS FLA+MSHELRTPLN+++GFS+V+E + Sbjct: 484 NLELEATRQKGEESLIEGRIVAEEANRTKSEFLANMSHELRTPLNSVIGFSQVLETNSSN 543 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L+++ K Y+ +I+ SG HLL LIN ILD+S++E+G+ + ++L +I+ + I++++ Sbjct: 544 HLDDKEQK-YVKNIYESGSHLLELINNILDISKVESGKMDYLPETVNLTEIIDDTIVLVE 602 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K++++ I + D ++++ NLLSNA+KFT G V V + Sbjct: 603 PMAKKKSVDLHLNIKSEDLEIHVDRLKFKEIMYNLLSNAIKFTPEKGTVSVNSKCVNKNF 662 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Q IS+ D G G+ + + ++ F Q + G GLGL + + + HGG+ + S Sbjct: 663 Q-ISVSDTGIGVPKEKFESIFDPFKQVDSTSSRSFGGTGLGLALVRKYVEMHGGEIWVES 721 Query: 461 KLREGVEVIAILPNT 475 ++ G LP Sbjct: 722 EVGVGSTFTFTLPFA 736 >gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 937 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%) Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 LL+ + I+ L +A L +A + A+ S + + + Sbjct: 329 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 384 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255 T + + V + + + E ++ R++AE N AKS FLA+ Sbjct: 385 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 444 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLNAI+G+SE++ E + E I+ +G+HLL LIN ILDLS+IE Sbjct: 445 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 504 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGR EL + SL +++ +++ ++ ++ + + AD +RQ +LNL Sbjct: 505 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 564 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNA KFT G + + V + + D+G G++ +I + +F Q + Sbjct: 565 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 622 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 G GLGL I++ + GG+ + S L EG LP + IP + T Sbjct: 623 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 678 >gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 890 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 85/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + T F Y+ + KS +++ + L+ E + +L + K+ +E + KS F Sbjct: 245 IGTLTETFNYMVNEVAKSKMELEKELTRRAKLLEERDELVALLQKANKQLKELDTLKSAF 304 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 +A+MSHELRTP+NAI+G+++++ E GPLN++ K + + + +HLL LIN++LD+S Sbjct: 305 IANMSHELRTPMNAIIGYTDLLLDEVDGPLNDD-QKTSLKKVAANARHLLQLINDVLDIS 363 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IE+G+ EL I L +++ ++ + +K + I+ ++ DE +Q++ Sbjct: 364 KIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNIESGAEKLYVDEDKTKQIL 423 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSF 424 +NL+SNAVKFT GG + + + IS+ D G GI ++ + F Sbjct: 424 INLISNAVKFTHQGG-ITIKAKVSERGKAKDGSPQFIEISVSDTGIGIKREDLDKIFDKF 482 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q ++ +G GLGL I + ++A H G S++ +G +LP + Sbjct: 483 AQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGSTFYVLLPFKK 534 >gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1108 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 151/279 (54%), Gaps = 5/279 (1%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMS 257 ++ + L D L + + + + +AE N +KS FLA+MS Sbjct: 813 AWLAKTFGEHAAIALRNSRNFDVLKGTNKRLEDTVLKANELAAQAEYANKSKSEFLANMS 872 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN+I+GFS+++ ET G L + ++Y +I++SG+HLL LINEILDLS+IEAG Sbjct: 873 HELRTPLNSIIGFSDILNGETFGKLT-QKQEKYTANINKSGKHLLYLINEILDLSKIEAG 931 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + E L + + ++ L+AQ+K+I++ + + AD+ ++Q+I NLLS Sbjct: 932 KMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-EINADKSKIKQIIFNLLS 990 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GRV ++ I++KD G GI E + T+ F Q + G Sbjct: 991 NAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETIFDPFMQVDASTSRKYGG 1050 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL + + + HGG+ + S++ +G + +P + Sbjct: 1051 TGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQ 1089 >gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 977 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%) Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 LL+ + I+ L +A L +A + A+ S + + + Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255 T + + V + + + E ++ R++AE N AKS FLA+ Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLNAI+G+SE++ E + E I+ +G+HLL LIN ILDLS+IE Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGR EL + SL +++ +++ ++ ++ + + AD +RQ +LNL Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNA KFT G + + V + + D+G G++ +I + +F Q + Sbjct: 605 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 G GLGL I++ + GG+ + S L EG LP + IP + T Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718 >gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 793 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 1/265 (0%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ +L I E A+ + + AEE + KS F+ +MSHELRTPLN++ Sbjct: 516 YRGPDGLLIGILGIGRDITERNRAEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSV 575 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+V+ E G L N++ K+YI +I +SG+HLL LIN+ILDLS+IE G+ EL Sbjct: 576 IGFSDVLLKEIKGEL-NDSQKKYISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFD 634 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L I+ E + +A +K+I + + + + D+ ++QVI NLL+NA+KFT G Sbjct: 635 LNSILSEVESIFSPQAAKKDINLQFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNG 694 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V +S+ D G GI E ++ V F Q + G G+GL +A+ Sbjct: 695 AISVIAKENDDNIIEVSVSDTGIGIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKK 754 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + H G+F + S++ +G + Sbjct: 755 FVQMHDGKFCVESEVYKGSTFTFTI 779 >gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 977 Score = 317 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 12/356 (3%) Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 LL+ + I+ L +A L +A + A+ S + + + Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255 T + + V + + + E ++ R++AE N AKS FLA+ Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLNAI+G+SE++ E + E I+ +G+HLL LIN ILDLS+IE Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGR EL + SL +++ +++ ++ ++ + + AD +RQ +LNL Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNA KFT G + + V + + D+G G++ +I + +F Q + Sbjct: 605 LSNASKFTHQ-GTIQLQVAAQGDQ-VVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 G GLGL I++ + GG+ + S L EG LP + IP + T Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718 >gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 767 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 115/467 (24%), Positives = 205/467 (43%), Gaps = 12/467 (2%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ--NPIFPMW 75 I +L R P + + L V + + + Sbjct: 285 EATIRTAFPAQPASIGASGIDSLVSVRRVRDYPFVIVATLPVDAALREWRRNTAVWTGIG 344 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 +++T+A+ + ++ + + + G+ ++L V Sbjct: 345 AVMTIAIALLTAFIVRQHARREQDQARLARASRRIR------GILDSMLDAVVTFDSNGR 398 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM--- 192 +T ++A L+ + + + + + T H +S Sbjct: 399 IITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLR 458 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + L + + ++ ++ +AE N AK+ F Sbjct: 459 LDGGPCTPAALPAALGGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEF 518 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAI+GF+EV+ E G + NE K I DIH SG+HLL+++N +LD+S Sbjct: 519 LANMSHELRTPLNAIIGFAEVLSSEFFGTV-NERQKSCITDIHDSGRHLLDIVNAVLDMS 577 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 ++E G+++LSE ++ + + +C++M++ RA I I ++ +++ +W D + +QVI Sbjct: 578 KLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVI 637 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNLLSNAVKFT GG++ V+ G + G +++ D G GI + + F Q Sbjct: 638 LNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTAN 697 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 +G GLGL I+++ + HGG +S L G + LP RV++ Sbjct: 698 RRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLPACRVID 744 >gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei Go1] gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei Go1] Length = 854 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 +L TA I + ++ E +++ + A+ + + AE N + S Sbjct: 225 ILLTATGKTLPILRSVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSE 284 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPL AI+GFSE++ + G + E K+++G+I SG+HLL+LIN ILDL Sbjct: 285 FLATMSHELRTPLTAIIGFSELMLGGSTGEFD-ELNKKFLGNISTSGKHLLSLINSILDL 343 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IEAG+ EL SL DI +L A +KNI + ++P V+AD +Q+ Sbjct: 344 SKIEAGKMELQSDYFSLQDIFSNTKNILSPLALKKNISMDFNVEPGF-FVYADRTRFKQI 402 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NL+SNAVKFT GG V V +G S +G +S+ D G GI++ EI + F Q + Sbjct: 403 MYNLVSNAVKFTQKGGSVEV-LGIVSEKGVRVSVSDTGIGISKDEIKQLFKPFKQIDSTL 461 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G GLGL +++ + HGG+ + S+ +G +P + + HE+ + Sbjct: 462 SRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKGSTFTFEVPVKTLKSGEIFRAHETAE 520 >gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 646 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 104/377 (27%), Positives = 169/377 (44%), Gaps = 19/377 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA--LST 176 L W LL + E + L + L++ LS L P+ ++ Sbjct: 273 LGWKLLITIPYHEIEKEIMASMMYMLLFVFLALILLSITTLIILDKTIIRPLSYLTDITK 332 Query: 177 QAIMSMHVLDISLA-------GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + ++ + + I + N + +D L + Sbjct: 333 NITETGNLNQKIELHTKGEVQELAKSFERMIGKIKEEEEQKNKAFNELSSYRDHLEDLVR 392 Query: 230 VAKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + R RAEE + KS FLA+MSHELRTPLN+I+GF+ +I GPL Sbjct: 393 ERTQQLEAANTDLITERNRAEEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPL 452 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E K+ +G + S +HLL LIN++LD+S+IEAG +S +++ + L+ Sbjct: 453 NKEQEKQ-LGMVQDSARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKS 511 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A++K + + I P + D++ + Q+++NL++NA+KFT G V V Sbjct: 512 AEDKGLSLHVDISPDTGFIIGDQRRIEQILINLINNAIKFTER-GYVCVKSSLREKN-VC 569 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 IS+ D G GI+E E+ + F Q +G GLGL I + ++ HGG ++ S+ Sbjct: 570 ISVSDTGIGISEEEMKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEP 629 Query: 463 REGVEVIAILPNTRVLN 479 +G E ILP L+ Sbjct: 630 GKGSEFTVILPAGEELS 646 >gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] Length = 1005 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 6/261 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + ++ + + ++E + + RK+AEE N+AKS FLA+MSHE+RTPLN ++G + ++ Sbjct: 748 EQELKQLEFLKQIEQSNQDLEIARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLL 807 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +++ ++Y I SG+ LL +IN+ILD S+IEAG L + +L +IV E Sbjct: 808 NTPL----DKSQEKYANRIDLSGKVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEV 863 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 ++Q +A+EK + + + D +RQVI+NL SNA+KFT G V + V Sbjct: 864 GELMQPKAEEKGLNLEISYAHDTPKHLIGDPTRIRQVIMNLTSNAIKFTQE-GSVAIKVS 922 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + + D G GI + + + F Q ++ G GLGL I + ++ G Sbjct: 923 NPKKAFIRVEVTDTGIGIPQEKKMHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEG 982 Query: 455 QFLIRSKLREGVEVIAILPNT 475 + S +G +P Sbjct: 983 KIGCESIENKGSTFWFEIPLQ 1003 >gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 679 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 184/449 (40%), Gaps = 16/449 (3%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 + + + R+ +L + + N + P+ ++ + Sbjct: 245 AAASAGVSALIFIYATRKRIEAGSLFTAILAGLVAITASSNMVTPVSAVAIGLITGILAI 304 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + + + +KI + VG + LC + + +++ + Sbjct: 305 IAEGFIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFA-QKSYLLAENGSRMHQLGIQALG 363 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + ++ +F L FL V T + + + Sbjct: 364 VIVAFSWSFGLGMLFFLCLKKVKRLRVTPEEEKRGLNVAEYEDVASWLDF---------- 413 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++I Q L ++ + E+ N KS FL +MSHELRTPLNAI+ Sbjct: 414 ---IRITRLQDINTILEKRVQEKTADLQMANVALEKANRLKSEFLTTMSHELRTPLNAII 470 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GF+EV+ E G L+ + KEY+ DIH SG HLL++IN ILDLS+IE G+ L + Sbjct: 471 GFAEVLRDEIAGSLSKD-QKEYVTDIHSSGHHLLDMINNILDLSKIETGKMHLQYEEFCI 529 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 D + + + ++ A K I + I + + AD+ RQ++ NLLSNAVKFT G+ Sbjct: 530 EDAINDTLTIINASANNKGISVHTNIQDNTPLLSADKTKFRQILYNLLSNAVKFTPENGK 589 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + V + I D G GI + + +F Q ++ +G GLGL + + + Sbjct: 590 ITINV-FQKDNSLQFEIVDTGIGIKPEDKEKLFEAFHQADASLTREYEGTGLGLHLTKRL 648 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRV 477 + HGG+ S +G ILP V Sbjct: 649 VELHGGKIWAESTFGKGSTFFFILPINPV 677 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 186/366 (50%), Gaps = 13/366 (3%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 I W + L + + + +S TLL+ L ++ L M V + FF +V + Sbjct: 202 ILSIFGWGQVYLTDSVDIAGVKVFVLQSETLLVQL-VNRLIPIMFLIVVGVVFFSLVFSW 260 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILSCQAEKDDLIAELEV 230 S +S + I L+G + F + L K ++++ + + +L Sbjct: 261 SLNRYISTALDSI-LSGFTSIRDGSFERVKFKSNDELGKISMELNKTMEFIEMTLEKLRK 319 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + L + A + + KS FLA+MSHE+RTP+NAILGF+E++ E NE +++ Sbjct: 320 SNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSE----ETNEEKRKH 375 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I+RSG+HLL+LIN++LDLS+IE+G+ ++ E S ++++E + A K + + Sbjct: 376 LVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHL 435 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 +D ++ V D ++Q++ NL+SN +KFT+ G + + + G+ YI + D G Sbjct: 436 AYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQ-GYITIQANYKEGKITYI-VNDTG 493 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E ++ + F Q + G+GLGL I + ++ G+ I S + +G +V+ Sbjct: 494 IGIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVV 553 Query: 470 AILPNT 475 LP Sbjct: 554 VSLPTK 559 >gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 921 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 153/287 (53%), Gaps = 12/287 (4%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + ++ EL++ + R +A E + AKS FL++MSHE+RTP+N+I+G +E++ Sbjct: 369 VEALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELL 428 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + +E ++YI +G+ LL LIN+ILDLS+IEAGR EL +L++ V Sbjct: 429 QETEL----SEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVEN 484 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 M+ LRA +K +E+ +I + V D + +RQ+++NLL NAVKFT G+V + + Sbjct: 485 IAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEK-GQVFLDL 543 Query: 394 GWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 S + +IKD G GI + + + SF Q + G GLGL I++ Sbjct: 544 RIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQ 603 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ ++S + G LP V N ++ ++ Y Sbjct: 604 LVELMGGKIWLKSTPQLGSTFYFSLPLKIVENNFKSQKSQTRNFEQY 650 >gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 851 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 143/251 (56%), Gaps = 2/251 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + A+ E + AE N K+ FLA++SHELRTPLN+I+GFSE++ E G L N Sbjct: 603 VTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGEL-N 661 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y+ ++ SG HLL+LIN+ILD+S+IEAG+ + + + +ID+V + + +A Sbjct: 662 EYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQAL 721 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 KNIE+ D L +++ADE +++ + NL++NA+KFT G+V + V + Sbjct: 722 NKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKL-DGNIRFA 780 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI E + + F Q + G GLGL + + + H G+ I S++ + Sbjct: 781 VKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNK 840 Query: 465 GVEVIAILPNT 475 G + +P Sbjct: 841 GTAIYFTIPVK 851 >gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 977 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 12/356 (3%) Query: 141 KSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 LL+ + I+ L +A L +A + A+ S + + + Sbjct: 369 LYIQLLLGVIIAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQL----QQQIPTSGRDE 424 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255 T + + V + + + E ++ R++AE N AKS FLA+ Sbjct: 425 LTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLAN 484 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLNAI+G+SE++ E + E I+ +G+HLL LIN ILDLS+IE Sbjct: 485 MSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIE 544 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGR EL + SL +++ +++ ++ ++ + + AD +RQ +LNL Sbjct: 545 AGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNL 604 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNA KFT G G G + D+G G++ +I + +F Q + Sbjct: 605 LSNASKFTHQGTDS--AAGCCQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKF 662 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 G GLGL I++ + GG+ + S L EG LP + IP + T Sbjct: 663 GGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQSIPAVDPVLTD 718 >gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 761 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 143/260 (55%), Gaps = 2/260 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ + AE N KS FL +MSHEL+TPLN+I+GFS++++ E GPL Sbjct: 498 RDITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPL 557 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE Y+ I SG++LL +IN+ILDLS+ E+G +L+ S+ + + + I ++ + Sbjct: 558 -NEKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQ 616 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 AQEKNI + + + + ADE RQ++ NLLSNA+KFT GG + VT+ G Sbjct: 617 AQEKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQ-EGLLVT 675 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I +KD G GI E + F Q ++ +G GLGL + + + HGG + SK+ Sbjct: 676 IEVKDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESKI 735 Query: 463 REGVEVIAILPNTRVLNFIP 482 EG LP TR P Sbjct: 736 GEGSSFRFELPVTRKRTVEP 755 >gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus Nitrospira defluvii] Length = 578 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 100/429 (23%), Positives = 170/429 (39%), Gaps = 17/429 (3%) Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV---WRIWLLVGQIAIGLCWTLL 124 W+LI A + + + R +++ + T Sbjct: 147 GQTHPWTWALIHGGFILAQCAALLYFWRVNELAQDEVRESEARTRMIIETALDAVITTDA 206 Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 T G T L T I ++ + P + P ++ + Sbjct: 207 TGTINGWNTQAELMFDVPRTEAIGKPLTTYVSAACPASGSTPITPYAG------LVPGAI 260 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L+ + T + + I+E + + ++ AE Sbjct: 261 LNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIFVQDISERKQQEERLCRAKEAAEA 320 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +LAKS+FLA+MSHE+RTP+N +LG +E++ + N+T + Y +H SG +LL++ Sbjct: 321 ASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPL----NDTQRRYAHTVHNSGTNLLHI 376 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363 IN+ILD S+IEAGR L L ++ E I + +A++K + + + P + + Sbjct: 377 INDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALSVTMTPDIPDMAHG 436 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVL 421 D +RQ++ NL+ NA+KFT G V V V G I + D G GI + Sbjct: 437 DPHRLRQILTNLVGNALKFTET-GTVAVFVRPDEGRPGRVRIEVTDTGIGIPLQAQEKIF 495 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 SF Q ++ G GLGL I + ++ GGQ + S +G + R + Sbjct: 496 DSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGTTFWFTISVDRSASPE 555 Query: 482 PEDNHESTQ 490 E + Sbjct: 556 TESQPHRSD 564 >gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 95/269 (35%), Positives = 149/269 (55%), Gaps = 4/269 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGF 270 K L Q E+ + E +V + SD + E+ KS FLA+MSHELRTPLNAI+GF Sbjct: 125 KRLHDQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGF 184 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +EV++ +GP+N+E +EY+ DI+ SG+HLLN+IN +LD+S+IEAG+ EL I + + Sbjct: 185 AEVLKDGLVGPINDE-QREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKE 243 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + + A +KNI I I + + D+ ++Q++ NLLSNA+KFT G V Sbjct: 244 TIDDVLNTVSGIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVC 303 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + +I D G GI + +I + +F Q ++ +G GL L + + ++ Sbjct: 304 IDTTL-KDLYVQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVE 362 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 HGG+ + S +G ILP Sbjct: 363 LHGGEIWVESFYGKGSTFTFILPLRPPNQ 391 >gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 970 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 161/391 (41%), Gaps = 11/391 (2%) Query: 103 VYVWRIWLLVGQIAIGLCW---TLLTLVEPGTWTPEYLTIYKSATLLIALSISA-LSNFM 158 LV G + L+ ++ + I +A LL + + L++ + Sbjct: 331 PQRAIARDLVRNNIAGSLFLFLGLILMLAIARSLTQREFIQPAALLLQHIERESELTDPV 390 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 P S P I + +L L T +L +N ++ Sbjct: 391 APLQQIPSSIPAGWRSWFTTISQTFSENRTLLWALQDKAESLTVAKKNLQSANEQLEEA- 449 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 L ++ + + R+ AE N AKS FLA+MSHELRTP+NAI+G+SE++ E Sbjct: 450 --NRTLEQKVAQRTAELEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEA 507 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E + + I +G+HLL+LIN+ILDLS+IEAGR +L SL ++ I Sbjct: 508 ADLEPEEFVPD-LQKIQAAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIAT 566 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +Q ++ + + K L S+ AD +RQ + NLLSNA KFT G + +TV Sbjct: 567 IQPLLEKNSNTLEVKAPTDLGSMHADLTKVRQSLFNLLSNACKFTDR-GTITLTVTRQ-D 624 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G G+ ++ + F Q + G GLGL I GG + Sbjct: 625 DAINFKVSDTGIGMTPDQMARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITL 684 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S G LP V P Sbjct: 685 ESTPGVGTTFTVSLPLE-VKELKPSAEEPKP 714 >gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 395 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 26/334 (7%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + + + ++ V + ++ +A I + + L+ + DL ++ Sbjct: 61 MPLMDGLTLLDNLRVFYPDIKAVIVSAYDDLDKIRSAMNRGAFDFLTKPIDFQDLEITIQ 120 Query: 230 VA---------KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + AE N AKS FLA+MSHELRTPLNAI+G+SE++ + Sbjct: 121 KTLENVQQLKENKRLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHS 180 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + + I +IH SG+HLL +IN+ILDLS+IEAG+ ++ +++++ ++ + +Q Sbjct: 181 LGSKDFIHD-INNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQ 239 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 ++ N + + + + AD MRQVILNLLSNA KFT G++ + V + Sbjct: 240 PLIEQNNNILEIICEDNQEPIMADPNKMRQVILNLLSNAAKFT-ENGKIILKVKVANNDE 298 Query: 401 QYIS---------------IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +IS + D G GI+E +I ++ F Q + G GLGL I+ Sbjct: 299 DFISQNRDCNFTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAIS 358 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + GG + S++ +G P ++++ Sbjct: 359 RHFCKMMGGDITVVSEVNKGSIFTVKFPVPQIIS 392 >gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1625 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 140/273 (51%), Gaps = 16/273 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ E R +A+E AKS FLA+MSHE+RTP+N ++G ++++ + P Sbjct: 900 ITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTELRP--- 956 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I SG+ LL LIN+ILD S+IEAGR EL +L ++ + ++ +RA Sbjct: 957 -EQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRAD 1015 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 EK +E+ DP + V D +RQ++ NL+ NA+KFT G V V V + Sbjct: 1016 EKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQ-GEVVVRVQRSEVSADDV 1074 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D G GI E +I + F Q + G GLGL I++ + GG+ ++ Sbjct: 1075 LLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQ 1134 Query: 460 SKLREGVEVIA----ILPNTR--VLNFIPEDNH 486 S+ G + L + L +P+D H Sbjct: 1135 SEYGRGCKFWFTARLTLQKKQEEPLPALPQDLH 1167 >gi|298247031|ref|ZP_06970836.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549690|gb|EFH83556.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 484 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 87/485 (17%), Positives = 171/485 (35%), Gaps = 26/485 (5%) Query: 17 SPTGDHLGLEYPSKMDF---DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP 73 + L + ++ + ++ L V + W + Sbjct: 1 MQAQETLSSSNRGQAKIWSTAAYLLLSFPSGILYFVVLVIFLGLSVGLLIVWIGIPMLIL 60 Query: 74 M----WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW---TLLTL 126 W Y A L + + W L + + W L L Sbjct: 61 GLYLSWQFAIFERYLAMHWLNCYISPLALSRQPRQNWL-QYLRAHLTNKMTWKTLAFLLL 119 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM---- 182 P I +L+ I+ + F+ ++L L + Sbjct: 120 KFPLGILSFVFAIQVPILMLVLALITFILGFVCTPILYLILVARNAPLVIRWPGRRPIYL 179 Query: 183 ----HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 ++ G L + + + DL + ++ Sbjct: 180 NGMKDLIRYVFTGFGLVLLPRYILLGMAWIWQQLGRALLGMNNQDLRVAQAEEQVRREQA 239 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL----ETMGPLNNETYKEYIGDI 294 + AE L++ + + ++SHELRTP+ +I EV+ + L + Y+G Sbjct: 240 K--AERAELSRQQLIVNVSHELRTPVASIRAHLEVLLKACAHDDGLVLQPQELSNYLGIA 297 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-IEIFQK 353 HR L +L+ ++L LSR EA + L+ +++ +++ E L A+++ I + Sbjct: 298 HRETVRLSSLVEDLLSLSRTEADKLRLNMASVPPGEVIEEVYQALLPLARKERMITLVHS 357 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + L V AD + + QV++NL+ NA+ +T GG + ++ IS+ D G GI Sbjct: 358 LPERLPRVQADHQRLTQVLMNLVRNAITYTPNGGIISISTRQEHSDYLVISVADTGMGIP 417 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + + + G GLGL I + ++ GG+ + S+ EG L Sbjct: 418 ADQLAQIFERFYRTDASRSRSSGGFGLGLSIVKDLVDAMGGKITVESQEGEGSCFHIHLR 477 Query: 474 NTRVL 478 + + Sbjct: 478 LAQAI 482 >gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 502 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 114/441 (25%), Positives = 192/441 (43%), Gaps = 14/441 (3%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 + ++ +F L A + W++ L++ S + Sbjct: 70 TRLSIALGAVIFALY-AVFDPYIIPEVATEAWAIRIGIACPLLLAIV---AISYLPGFSY 125 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 + L I L + +Y + L+I ++ L Y++ Sbjct: 126 RHQALLSLAMAIP-----ALAVVAMIAIAAAPGNYLYYAGVLIILSYVNCLWRLRYYYSI 180 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 +S ++ ++ + + + + + + + + Sbjct: 181 LMSVLACAAYEYAVLFVNPIPTNMLINNNVFLIFGVGVSMFVNYVQ-EYHLRRSFIDNEK 239 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L +E ++ L R+E N AK+ FLA MSHELRTPLNAI+GFSE+I + GP+ Sbjct: 240 LRSEQRRSERLLS----RSEAANRAKNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVG 295 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 Y +Y DI SG HLL++IN+ILD+S+ EAG+ +L E I ++ + + M + RA Sbjct: 296 QPKYVDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRA 355 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E +E+ ++ + + AD + QV +NL SNA+KFT G V V +G + Sbjct: 356 SELGVELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVL 415 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +++D G GI + + F Q A+ +QG GLGLP+ + IM HGG + S + Sbjct: 416 AVRDTGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVD 475 Query: 464 EGVEVIAILPNTRVLNFIPED 484 EG A P +R + P D Sbjct: 476 EGTIARATFPRSRFVAAQPND 496 >gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 946 Score = 312 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 181/445 (40%), Gaps = 24/445 (5%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 + ++L P + A +A G + W Sbjct: 85 TFFSALIAIVLCGVGFAIVLGRPGPLAGGALIGAAISAMHFTGMTAVRIPADPV----WD 140 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + +V + IG+ + + + S IA+ + + V Sbjct: 141 MNYVVAAVVIGVLTSAGAMHAAMRVPALGGILVGSLLFTIAICATHFTAMTALTYVPDPT 200 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFT--YITYHLFKSNVKILSCQAEKDDLI 225 V ++ ++++ + ++ + + Y+ ++ I Sbjct: 201 IVVTDVVAEPGMIAIAIATVTFLIIALGLVGALVDNYLAQRASGEAERMRVY-------I 253 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 AELE K + +AE N AKS FLA+MSHE+RTP+N +LG +E++ + N Sbjct: 254 AELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTAL----NA 309 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +++ + SG+ LL ++N+ILD+S++EAGR EL L++ V I ++ RA E Sbjct: 310 EQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAAE 369 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG----- 398 K I++ I+P+ ++ D +RQV+LNL+ NA+KFT GG V V+V Sbjct: 370 KQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVEDPQTKA 429 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI E + F Q ++ G GLGL I + I+ G + Sbjct: 430 SHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGV 489 Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483 S++ G L R +P+ Sbjct: 490 NSRVGAGSTFWFQLSLVRSAAHLPD 514 >gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 996 Score = 312 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 3/268 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + ++K S I + A+ ++ AE + AKS LA++SHELRTPL Sbjct: 730 KLTRIDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLT 789 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I+GFS+++ +G L NE+ K Y+ +HRSG+HLL+LI +ILDLS+IE+G++EL Sbjct: 790 SIIGFSDILLKGKLGDL-NESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEK 848 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +S+ ++++ + A +K +EI I+ S+ ++AD+ +RQ++ NL+ NAVKFT Sbjct: 849 VSIPQLMKDLKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQ 908 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V V + W S+ D G GI + + SF Q G GLGL + Sbjct: 909 -GSVTVKLDWNDNDML-FSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALV 966 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ HGG+ + S+ REG I+P Sbjct: 967 ERLVEMHGGKIWVESEEREGSRFSFIIP 994 >gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 882 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 11/268 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + A+ + AE N AKS FL++MSHE+RTP+N ++G ++++EL + N Sbjct: 480 VTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTEL----N 535 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + G++LL LIN+ILD+S+IEAG L SL+ +R+ ++ A+ Sbjct: 536 AEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAR 595 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK + + ++ P + +V D+ +Q++LNLL NAVKFT GG V +TV Sbjct: 596 EKALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGG-VTITVTLLEQPVAPP 654 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D G GIA + + F Q + G GLGL I++ + GG I Sbjct: 655 LFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIE 714 Query: 460 SKLREGVEVIAILPNTRVLN-FIPEDNH 486 S G LP + + P ++ Sbjct: 715 STPGVGSCFTLTLPLSPAPDGSKPVESP 742 >gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] Length = 815 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A+E + KS F+A++SHEL+TPL AI G+SE++ + P E + Y I++ + L Sbjct: 461 AKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP---EKVRNYYQIIYKESERL 517 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 LIN++L++SRIE+G+ EL + + + +++E Q + + I + + + Sbjct: 518 TQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKH--TIVLQFPEYPTFI 575 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QV NLL NA+K++ GG + V V I ++D G GI +P + Sbjct: 576 LGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMED-IVIEVQDQGIGIPPEHLPHIF 634 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + +++ + G GLGL I +SI+ HGG+ + SK+ EG LP Sbjct: 635 DRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPRR 688 >gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 864 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 11/312 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + + + T Y L + + L Q + + L +E + Sbjct: 139 GMFYGLRQGSMHRTSVATMELLSIILTSTAYALESAELYRLLSQ-DNERLQKLVEKRTAE 197 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R +AE N AKS+FLA+MSHELRTPL+ I+G +++ + +EY Sbjct: 198 LERARDQAEGANRAKSQFLANMSHELRTPLSGIIGMVDLLLDTRLDN----EQQEYARLA 253 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S LL LIN+ILD S+IEAG+ E+ E+ SL + + L AQ+K I + + Sbjct: 254 SDSAHALLALINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYV 313 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409 DP L V D +RQV+ NLLSNA+KFT G V + V GQ + D G Sbjct: 314 DPQLPAYVRGDALRLRQVLANLLSNALKFTEK-GSVQLQVKILGDGGQAPLIRFEVCDTG 372 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + SF Q + G GLGL I ++++ GG+ I S+L +G Sbjct: 373 IGVDAEVAERLFQSFTQADSSTTRKYGGTGLGLAICRNLVELMGGEIGIESRLGQGSTFW 432 Query: 470 AILPNTRVLNFI 481 LP LN Sbjct: 433 FTLPLLPALNHA 444 >gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453] gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453] Length = 559 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 8/269 (2%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++++N ++ + ELE + ++ AE AK+ FLA MSHE+RTP+N Sbjct: 127 MYQTNNRLKIQSMQLHQKTLELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNG 186 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +++ + E +EY I S L+N+IN+ILD S++E+G+ EL E Sbjct: 187 VIGMIDLLMDSEL----QEEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 L V+E + A +KN+++ I+ + V+ D +RQV++NL+SNAVKFT Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLQLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302 Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + V++ ++KD G GI+ +I + F Q ++ G GLGL Sbjct: 303 GGVYLVVSLTQVEEDRLTLEFTVKDTGIGISSEKIDRLFKPFSQLDSSMTRKYGGTGLGL 362 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I +S++ GG + SK +G + Sbjct: 363 AICRSLVQMMGGDITVESKENKGATFVFT 391 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 11/270 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ ++ AEE + KS FLA+MSHE+RTPLN ILGF++++ ET + ++++ Sbjct: 366 QQELEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDET----EDAKKRDHL 421 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG++LL LIN+ILD S+IEA + +L +++ M L A+ K ++ Sbjct: 422 HLIKDSGKNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFT 481 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D L + D+ +RQ+++NLLSNA+KFT + G V + + + S+ D G G Sbjct: 482 VEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEV-GSVSLRAHYENTGIMRFSVSDTGIG 540 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I E + F Q + K G GLGL I + ++ GG + SK G Sbjct: 541 IPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIE 600 Query: 472 LPN------TRVLNFIPEDNHESTQYKCYA 495 LP + + P S + ++ Sbjct: 601 LPLPTTTRTSAIHGPSPRQASVSGDKRVHS 630 >gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon] Length = 476 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 10/285 (3%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 ++ ++ + K+ +AE + +L +R +E + Sbjct: 197 TVIAIILGGSFGLIVMFSRWNKT------LEAEVESKTGDLIRTNKELALANERLKELDR 250 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS F++ +SHEL+TPL A+ ++V+E + ET +E + I R+ NL+N+ Sbjct: 251 LKSDFVSMVSHELKTPLTAMRTSAQVLE---AAGIATETKREMLDIILRNIDRQTNLVND 307 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LDLSRIE+GR +L ++SL ++ + I ++ A EK I++ K+ LSSV D + Sbjct: 308 LLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKGIKLNVKLPEGLSSVKGDREK 367 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV++NLL+NA+KFT G + + +G+ + + D G GI ++ V F Q Sbjct: 368 LTQVVINLLNNAIKFTPRSGEISIKAIELNGQ-VEVKVSDTGIGIPPEDLEKVFDKFYQV 426 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + I+ H G S+L +G + L Sbjct: 427 DSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGSTFVFTL 471 >gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 687 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 110/423 (26%), Positives = 170/423 (40%), Gaps = 6/423 (1%) Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 +P L L + +K + + L Sbjct: 16 LDDPWLTALLLAYPVGDLIVLFGVVHIA---LKSDNWRSALPMHMFSLGLLAFLAGDLGY 72 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 ++ S+ ++A +I A++ + + +T A +++ Sbjct: 73 SSMMMSETYQEGMWPSSLWIVAYTIFAVAAQLQLTSQAAPARQSATDGATTASLNLLPYL 132 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + G T L + L+ R AE + Sbjct: 133 GIVVGFGLLLAVTIQNWTRPLGDLIIGALALTVIVMVRQVVAMRENVRLATERAAAEHAS 192 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN+I+ F+ +I GP+ E +Y+ + +SG+HLL LIN Sbjct: 193 QIKSEFLANMSHELRTPLNSIINFTRIISTGARGPVTPEQI-DYLNRVRQSGEHLLGLIN 251 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +ILDLS+IEAGR EL + + D+++ + +EK IE+ +I P L V+AD Sbjct: 252 DILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIELRSEIAPHLPPVYADRT 311 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV+LNLLSNA KFT G + V I + D G GIA + + +F Q Sbjct: 312 RVRQVLLNLLSNAAKFTDA-GTITVHAE-GCNGEIVIHVSDTGIGIAPEHLEKIFEAFRQ 369 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 A +G GLGL I + ++ HGG+ + S + G LP T Sbjct: 370 LDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFSFSLPLTAATQSASSPES 429 Query: 487 EST 489 T Sbjct: 430 SQT 432 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 9/263 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ R +AE N AKS FLA+MSHE+RTP+NA+LGF+ ++ + NE ++++ Sbjct: 809 ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPL----NEQQRDFLQT 864 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 +H++G+ LL +IN+ILD S+IE+G+ L + + + V + + +L +AQEK +E+ Sbjct: 865 LHQAGEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYT 924 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNG 409 P + D +RQ+++NL+ N +KFT G+V V VG ++D G Sbjct: 925 CTPETPAQIKGDVTRLRQILVNLVGNGIKFTHE-GQVAVHVGVLKREGKDFLQFQVQDTG 983 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + F Q + G GLGL I++ + GG + S +G Sbjct: 984 IGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFT 1043 Query: 470 AILPNTRVLNFIPEDNHESTQYK 492 + ++P H + + K Sbjct: 1044 FTILAEGQKPYVPPKVHPALEGK 1066 >gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 141/256 (55%), Gaps = 1/256 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + A++ ++ AE N AKS+FLA+MSHELRTPLNA++GFSE I GP Sbjct: 199 RDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLNAVIGFSEAILAGAAGPA 258 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ IH +GQHL LI +ILD+SRIEAGR EL E ++VR +L+ + Sbjct: 259 SLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVRAAARLLEHK 318 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + ++ I P L + D + +RQ++LNL NA+KFT GG+V + Sbjct: 319 SVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICATLVPDGLAL 378 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIA + +F Q ++ QG GLGL I + + HGG + S Sbjct: 379 V-VSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLDSAP 437 Query: 463 REGVEVIAILPNTRVL 478 +G + +LP +R++ Sbjct: 438 GQGTRITVLLPTSRII 453 >gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC BAA-1498] Length = 769 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E E ++RAE N AKS FLA++SHELRTPL Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE++ T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I+L I+ E I L +AQ K I + I+ L D + M+Q+ LNL+SNAVKFT Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTP 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + + + SIKD G GI + I + F Q G GLGL I Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V I+P + Sbjct: 737 SRSLLELHKGKLEITSKEGKGTIVTIIMPIQQ 768 >gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 584 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 105/478 (21%), Positives = 194/478 (40%), Gaps = 29/478 (6%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ----NPIFPMWSLI 78 + + D + + + ++R++P ++ + + +P+ W L+ Sbjct: 1 MAHPDGQQSDIEARVFAEQIAMIYRLTPHTLAMSVIGSTLILVALWTSAPHPLLFGWYLL 60 Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL-TLVEPGTWTPEYL 137 + L + +D +W ++G IA GL W + T++ P + Sbjct: 61 HHVITLCRYRLIRSYRRADPPPAAAPLWARRFVIGTIAAGLIWATVGTVLFPPPGSDVQF 120 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I + A + LS + + + +S + S G + Sbjct: 121 FIGMYLVGVAATGMFTLSAYFWSFLPLAGLTLI--PMSLWLLASGVTSLQIAGGATFLFV 178 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + E + E A + FLA+MS Sbjct: 179 YIVLSNGRRFERITSDSIRLRIELNAAKEAAEAASRAKSQ--------------FLANMS 224 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +E++ + E + + ++RSGQ LL++IN+ILD S+IEAG Sbjct: 225 HEIRTPMNGVLGIAELLLATPLA----EQQRSRLQTLYRSGQSLLDVINDILDFSKIEAG 280 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + EL ES L ++R+ + A K + + ++ + + + AD+ +RQV+ NL+ Sbjct: 281 KLELRESDFDLRAMLRDVLDAFAATAAAKGLALSSRLGADVPAGLHADQARLRQVLTNLI 340 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT GRV VTV + +++D G G+A E V +F Q ++ Sbjct: 341 GNAIKFTEA-GRVVVTVERLDDQHLRFAVQDTGVGLAAEERARVFDAFAQADVSHTRRHG 399 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNHESTQYK 492 G GLGL I++ I+ G+ + S G LP P + ++ + Sbjct: 400 GTGLGLAISRQIVTLMAGEIGVDSTPGAGSTFWFKLPFQPAQHEPATPAADPLASPQR 457 >gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] Length = 559 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 10/294 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++++N ++ A+ ELE ++ AE AK+ FLA MSHE+RTP+N Sbjct: 127 MYRTNNRLKIQSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNG 186 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +++ + + +EY I S L+N+IN+ILD S++E+G+ EL E Sbjct: 187 VIGMIDLLMDSEL----QDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 L V+E + A +KN+E+ I+ + V+ D +RQV++NL+SNAVKFT Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302 Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + V++ ++KD G GI+ ++ + F Q ++ G GLGL Sbjct: 303 GGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGL 362 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQYKCY 494 I +S++ GG+ + SK EG + + P + S +Y+ + Sbjct: 363 AICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLREEEHSGKYRVH 416 >gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51] gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 896 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 139/269 (51%), Gaps = 10/269 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 K + +L E+ + E + A++ + +++AE N AKS FLA+MSHE+RTP+N I+ Sbjct: 360 KVMLTLLRDITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLANMSHEIRTPINGII 419 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ L ++ +T +E + L +IN+ILD S+IEAG+ + E +L Sbjct: 420 GMIDLTLLTSL----EKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNL 475 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + I A+ K +++ + +L + D + ++QV+ NLLSNA+KFT G Sbjct: 476 KEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFTER-G 534 Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V G ++ D G GIAE + + F Q +I G GLGL Sbjct: 535 EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGLGLA 594 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I++ ++ GG+ + S+ +G +L Sbjct: 595 ISRKLVEMMGGRIWVESEKGKGSSFGVVL 623 >gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1524 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 138/252 (54%), Gaps = 2/252 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ T + E K F+A+MSHELRTPL +ILG SEV++ E G L Sbjct: 1110 RDITERKRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVL 1169 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E + + I +SGQHLL LINEILDLS+IE+G+ EL SA++L + + + ++ + Sbjct: 1170 NAEQLRS-LSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQ 1228 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401 A +KNI++ P + DE +RQV++NLLSNAVKFT G + + + Sbjct: 1229 ADQKNIQLQFIATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCV 1288 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++S+ D G GIA + + F Q ++ G GLGL + + I H G + S+ Sbjct: 1289 HLSVTDTGIGIAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSE 1348 Query: 462 LREGVEVIAILP 473 + G I LP Sbjct: 1349 VGRGSTFIVTLP 1360 >gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 923 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 23/436 (5%) Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL-----------CWTLLTLV 127 + V + + + L G GL WT + Sbjct: 241 MVVVNPLRNDASRPFSIKTPLVRGAFPALARALAGVHGSGLFDDVENKPVVASWTYVPSF 300 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-------PVVVALSTQAIM 180 G + + T + L FM+P + L+ P+ A+ + Sbjct: 301 RWGMVVQQRTAEAFALTRAQRDATLWLLFFMIPPIIVLAMAVARTITRPIKTAVGVAEKV 360 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETR 239 + LD + + ++ +K EL++A R Sbjct: 361 AGGDLDANFEIESRDETGHLLTAIRSMTGELRELYGSMEDKIRARTRELQMANEELSVAR 420 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AEE + KS FLA+MSHELRTPLNAI+G+SE+++ + + + E ++ + I +G+ Sbjct: 421 VAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDKGDAEPLED-LKKIEGAGR 479 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+ILDLS+IEAG+ E+ + + +V E + ++Q A++ + Sbjct: 480 HLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLAEKNGNALELVCPDDAG 539 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 S +DE ++Q +LNL+SNA KFT+ G+V + V + + D G G+ E ++ Sbjct: 540 SFHSDETKVKQCLLNLMSNANKFTSK-GKVTLIVERDAQASVVFRVSDTGLGMTEEQLGR 598 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + +F Q + G GLGL I + GGQ ++S G LP+ + + Sbjct: 599 LFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPDAGSTFTITLPDQQKVP 658 Query: 480 FIPEDNHESTQYKCYA 495 + +++ K +A Sbjct: 659 EKMKAEPDAS--KSHA 672 >gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 464 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 152/337 (45%), Gaps = 19/337 (5%) Query: 159 LPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L VF F P +A + ++ G L + K + +L Sbjct: 113 LGRVVFGPFVPEDLAELPAALRDIAPDFDAKLAQGYLEKIRRVPVSTAEKILKHFMDLLD 172 Query: 217 CQAEKDD--------LIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELR 261 I ++ + E + E E + KS FLA+MSHELR Sbjct: 173 VMVFTGHKNLIAAKLHIEAVQESYRELQEKNRELEDSYAKLKELDRLKSNFLATMSHELR 232 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL +++G+SE++ GPL E +EY+G I G++LL LI ILD+S+IEAGR L Sbjct: 233 TPLTSVIGYSEMMLEGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRL 291 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S + I+R+ I + A++K +++ ++ V AD +RQ ++NL SNAVK Sbjct: 292 VLSDVDATQIMRDAIATVLPLARKKGLKVACD-AGAMPRVQADRDKLRQCLVNLCSNAVK 350 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT GG + V+ G I + D G GI E + V F Q + G GLG Sbjct: 351 FTPAGGTIAVSAEALPGDRLAIHVADTGIGIGEEHLGKVFDVFYQVDGSSTREYGGAGLG 410 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 L I +S + HGG+ +RS G ILP L Sbjct: 411 LAIVKSFVEAHGGEVGVRSIPGVGTTFTVILPLRPSL 447 >gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10] gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10] Length = 559 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 10/294 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++++N ++ A+ ELE ++ AE AK+ FLA MSHE+RTP+N Sbjct: 127 MYRTNNRLKIQSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNG 186 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +++ + + +EY I S L+N+IN+ILD S++E+G+ EL E Sbjct: 187 VIGMIDLLMDSEL----QDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPF 242 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 L V+E + A +KN+E+ I+ + V+ D +RQV++NL+SNAVKFT Sbjct: 243 DLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNE 302 Query: 386 GGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + V++ ++KD G GI+ ++ + F Q ++ G GLGL Sbjct: 303 GGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGL 362 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQYKCY 494 I +S++ GG+ + SK EG + + P + S +Y+ + Sbjct: 363 AICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLREEEHSDKYRVH 416 >gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] Length = 1044 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 16/343 (4%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L A + +++A+ +I + ++ I + ++ Sbjct: 302 LTLLIAAGVWALSLILAIIGFLFARDITGNIKRLESILRKVAEAESIKDEKTEEIESKIN 361 Query: 217 CQAEK--DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + LE A + + + AEE + AKS FLA+MSHE+RTPLN I+GF++++ Sbjct: 362 LDTTQGINAAYELLETALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLL 421 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +E++ I +S ++LL +IN ILDLS+IE+ + E+ + I+ Sbjct: 422 KNTELTP----EQREFVNIIEKSSENLLEIINAILDLSKIESKKIEIENIVFNPIEEFEN 477 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 I + RA EK+I +DP L + D +++V++NL+SNA+KFT GG V V + Sbjct: 478 AIEVYAPRAAEKDINFALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEI 537 Query: 394 GWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 Y ++D G GI E + + +F Q ++ G GLGL I+ + Sbjct: 538 RKVKEYNERAEIYFEVRDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFI 597 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG+ + S++ +G + L VL +P ES + + Sbjct: 598 KLMGGRLNLESEVGKGTKFFFTL----VLEEVP-ALTESLENR 635 >gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 623 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 8/292 (2%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + ++ E + +AE AK+ ++ ++ AEE N+ KS+FLA+MSH Sbjct: 79 LERKVEERTAELKKAHRELEHRVAERTEELLHAKNQAEHAQRLAEEANVTKSQFLANMSH 138 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAILG+SE+++ E +E + + I+ +G+HLL LIN++LD+S+IEAG+ Sbjct: 139 ELRTPLNAILGYSEILQEEAEELGQSECISD-LQRIYSAGKHLLELINDVLDISKIEAGK 197 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +LS L +++E I +Q + ++K + KI L ++ +D +RQ++LNLLSN Sbjct: 198 MDLSLETFDLAIVIKEVISNIQPQVEKKANILEVKIADPLGTMLSDLTKLRQMLLNLLSN 257 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A KFT G + + V + + DNG G+ E + V F Q + G Sbjct: 258 AAKFTEQ-GTISIEVKREQEETWFCFMVTDNGIGMTEEQQKKVFQPFTQADASTTRRFGG 316 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLGL I + GG L+ S+ +G +LP + P+ +H++ Sbjct: 317 TGLGLAITKQFAEMMGGYILVNSEFGKGSTFKLLLPIETQI-TAPQQSHKTP 367 >gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter metallireducens GS-15] Length = 576 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 89/312 (28%), Positives = 157/312 (50%), Gaps = 3/312 (0%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + + + L IM++ + + T + L + + + ++ Sbjct: 265 LPVWLQVSGLILGVVVIMTVTGFILWNRTLRRTVKLRTAQLEQELAERKMAEEELRKYRE 324 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +L + + ++RAE + KS FLA+MSHELRTPLN+I+GF+ ++ GP+ Sbjct: 325 NLEDLVRERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPI 384 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+E K+ + + S HLL+LI+++LD+S+IEAG+ ++S L + V++ + Sbjct: 385 NDEQAKQ-LTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGL 443 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 +K + + +I + S+ +D++ + QV+LNLLSNAVKFT G + V S Sbjct: 444 VDKKGLRLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQ-GTISVRCSRESEWYVT 502 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D+G GI E ++ + F Q + +G GLGL I + ++ GG + S+ Sbjct: 503 -SVADSGIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQ 561 Query: 463 REGVEVIAILPN 474 EG +LP Sbjct: 562 GEGSTFCFLLPA 573 >gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 580 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 149/249 (59%), Gaps = 3/249 (1%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 S+ R AEE KS FLA+MSHELRTPLN+++GFSEV++ E GP+ NE Sbjct: 333 ERRKLRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDELYGPM-NEKQ 391 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +EY+ +IH SG+HLL+LIN+ILDLS++E+G+ EL SA SL D++ + + M + +A Sbjct: 392 REYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAMFKEKALRSA 451 Query: 348 IEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + I + DP +++ AD++ ++Q++ NLLSNA+KFT GG + V+ I++ Sbjct: 452 VGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQVSARRMPD-FVEIAVA 510 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI +IP + F Q +G GLGL +++ ++ HGG+ ++SK G Sbjct: 511 DTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIRVKSKFGTGS 570 Query: 467 EVIAILPNT 475 +P Sbjct: 571 RFSFTIPLK 579 >gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 523 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W + I +G+ G+ + I + L +A++ + + Sbjct: 139 WDRDYVAASIVLGVVLGAAATQAAGSLSGLRGRIIGAGLLTLAIASLHFTGMAAVTVSYD 198 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT--YITYHLFKSNVKILSCQAEKDD 223 + V +++ V ++L ++ + ++ + +++ + E D+ Sbjct: 199 AAAQVASNAVEPYTVAIAVAAVTLLIVILAFVGSAVERHLADRSVQETIRLRAHVLELDE 258 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +LE + + A + AKS+FLA+MSHELRTPLNAILGFSE++ ET GPLN Sbjct: 259 TRKQLEKTSAELLVALQSASSADQAKSQFLATMSHELRTPLNAILGFSEIMAAETFGPLN 318 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 N Y +Y+ DI +SG+HLL+LIN++LD +R++AG L E I L + V + I M+ +A Sbjct: 319 NARYSDYVQDIFKSGKHLLSLINDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQA 378 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +NI + +I L + AD + +RQV+LNLLSNAVKFT GG VH+ + + Sbjct: 379 KAQNIALDYEIAADLPHLIADHRRIRQVLLNLLSNAVKFTPDGGEVHIGA-LVADGAMLL 437 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA IP L FGQ + +G GLGLP+A+ +M +HGG I S+L Sbjct: 438 RVTDTGIGIAAENIPLALERFGQIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELG 497 Query: 464 EGVEVIAILPNTRVLNFI 481 G V P RV+ Sbjct: 498 RGTTVTVTFPPERVVAAA 515 >gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 849 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 94/266 (35%), Positives = 146/266 (54%), Gaps = 2/266 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + + AE N AK F+ +MSHELRTPLNA++GFS+++ ET GPL N Sbjct: 567 ITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGPL-N 625 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y +I +SG HLL++IN++LD+SR+E G EL + + ++ E +L + Sbjct: 626 EKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSLSA 685 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 EKNI I K++ L ++ D +Q++ NLL+NA+KF++ G+V++ + G IS Sbjct: 686 EKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIKA-RSEGDMVEIS 744 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI E + V F Q +I GVGLGL + + + HGGQ + + + Sbjct: 745 VKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASPGK 804 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G +P ++ Q Sbjct: 805 GSTFTFRIPKRPEKEIKEKEVTNPLQ 830 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 309 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 143/270 (52%), Gaps = 2/270 (0%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +++ ++ +++ + E K FLASMSHELRTPLNAILG S Sbjct: 739 IRVCRDITQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLS 798 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E ++ E G + + ++ + I SGQHLL LIN++LDL++IE+G+ EL A+SL + Sbjct: 799 EALQEEVYGSITD-RQRKSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKL 857 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 ++ ++ +A KNI++ ++ L + DE+ +RQV++NLLSNAVKFT GG V + Sbjct: 858 CNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVIL 917 Query: 392 TVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 S+ D G GIA+ +P + SF Q + G GLGL + Q + Sbjct: 918 KAEEDLLRNTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTIE 977 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 HGG+ + S++ +G LP + Sbjct: 978 IHGGRVDVESEVGQGSCFRVTLPIKQSGEP 1007 >gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3] Length = 769 Score = 309 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E E ++RAE N AKS FLA++SHELRTPL Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE++ T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I+L I+ E I L +AQ K I + I+ L D + M+Q+ LNL+SNAVKFT Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HANVDCRAMKQIFLNLISNAVKFTP 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + + + SIKD G GI + I + F Q G GLGL I Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V I+P + Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC 11218] Length = 807 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 161/321 (50%), Gaps = 13/321 (4%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 Y + + +S + ++A LAT ++ F + + + Sbjct: 378 YVLIVGLIGFYALFLMFIWLSSKQMSQAIAQPLATIQDMVHKVSLGDFNVSHRRFRLKEL 437 Query: 221 KD------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 D + +L+ + + +AE N+AKS+F++++SHE+RTP+N+ILG S ++ Sbjct: 438 DDTADSVMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLL 497 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + +E + ++ I +SG+HLL+LIN+ILD+S+I+AG+ ++ E L +V + Sbjct: 498 MTSNL----SEEQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYD 553 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + + +A++ +++ +D SL + D ++Q++LN +SNA+KFT G + V Sbjct: 554 VHDIFEYKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQG 613 Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 TS +S++DNG G++ + V SF Q + G GLGL I + I Sbjct: 614 AVTSESVFALRLSVEDNGIGLSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHL 673 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG+ + S+L +G L Sbjct: 674 MGGEVGVESRLGDGSTFWLTL 694 >gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 896 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 138/269 (51%), Gaps = 10/269 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 K + +L E+ + E + ++ + +++AE N AKS FLA+MSHE+RTP+N I+ Sbjct: 360 KVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHEIRTPINGII 419 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ L ++ +T +E + L +IN+ILD S+IEAG+ + E +L Sbjct: 420 GMIDLTLLTSL----EKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNL 475 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + I A+ K +++ + +L + D + ++QV+ NLLSNA+KFT G Sbjct: 476 KEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFTER-G 534 Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V G ++ D G GIAE + + F Q +I G GLGL Sbjct: 535 EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGLGLA 594 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I++ ++ GG+ + S+ +G +L Sbjct: 595 ISRKLVEMMGGRIWVESEKGKGSSFGVVL 623 >gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] Length = 725 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 169/345 (48%), Gaps = 16/345 (4%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL---- 207 SAL+ + +FL +V+ I+ + V+ + + + Sbjct: 96 SALTERFVMLLLFLGGATLVLGGLVFFIVYVDVVRPLVWISHGVTKFGADNLPETIEPPK 155 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++++ + +D +A++ + + +AE+ N KS FLA+MSHE+RTP+N I Sbjct: 156 RPLGEELVTLYTQYNDTVAKMREYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGI 215 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G + +++ G +E +E+I + S LL++IN+ILD S+IEAG+ EL ++ Sbjct: 216 IGMASLLK----GTPLDEEQREFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELN 271 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG 386 L ++ ++ + +LR +EK +E +D +L + D +RQV++NL+ NAVKFT Sbjct: 272 LFELCKDIEHLFRLRTKEKGLEFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFT-QS 330 Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G+V V++ + G ++D G GI ++ TV F Q ++ G GLGL Sbjct: 331 GKVSVSIRQVAEAGDNITVTFEVEDTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGL 390 Query: 443 PIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDN 485 I+ I+ GG+ + S+ EG ++ +P D Sbjct: 391 AISSQIVELMGGEIEVESREGEGSRFFFTVTFERAQMPEAMPGDT 435 >gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1083 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 10/264 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + ++L +++ + ++ AE+ N+AKS+FLA+MSHE+RTPLN I+GF + Sbjct: 412 AEELCSFINNLEEKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSI 471 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 +E + T ++YI I S + LL +IN+ILD+S+IEAGR E+ + A + ++ Sbjct: 472 LEKTDLDS----TQQDYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIE 527 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 I + +A+EK +E+ I+ ++ + D +RQ+I NL+SNAVKFT G V + Sbjct: 528 STIFLYDAKAREKGLELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTH-NGEVFIE 586 Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V Y I+D G G+ E EI + F Q + G GLGL I + I Sbjct: 587 VSVIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKI 646 Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472 + GG ++S G L Sbjct: 647 VEMMGGTISVKSVKNRGTTFCFDL 670 >gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 844 Score = 309 bits (791), Expect = 8e-82, Method: Composition-based stats. Identities = 98/336 (29%), Positives = 165/336 (49%), Gaps = 10/336 (2%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + L+ ++ ++ + V +S +V+A+ + ++ + + Sbjct: 515 LDAVLSLVHTQVTTMAQQLAASTVMMSAVVIVIAIWMASFLTRRITAVVQGIRRFEDGDM 574 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + +SN ++ + +D+ + + ++E R RAEE + KS FLASMSHE Sbjct: 575 AHRLP---VQSNDEMGVLASSFNDMADRVGESFQRAEEARLRAEEASRMKSEFLASMSHE 631 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN I+GF+E+I+ + +E +E I +SG HLLNL+N ILD+++IEAG Sbjct: 632 LRTPLNGIIGFAELIKDDA----ADEEMRENAEIIEKSGSHLLNLVNTILDVAKIEAGAM 687 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 L+ + + +V E + Q A K ++ ++ L + D +RQV+ NLLSN Sbjct: 688 TLARETVDIRTLVTEVAAIHQSGADAKGLDFQVQLADDLPPALVTDPVRVRQVLHNLLSN 747 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT G V I + D+GPGIA + F QG + + G Sbjct: 748 AVKFTQAGRVHTVVAA--DKDSVVIRVIDSGPGIALDLQDKIFEKFHQGDAFLTRSHGGT 805 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL +A+ ++ GG+ + S++ +G + LP Sbjct: 806 GLGLTLARHLVELMGGEMSLESQVGQGSTFVFTLPA 841 >gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] Length = 769 Score = 309 bits (791), Expect = 8e-82, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E E +++AE N AKS FLA+MSHELRTPL Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE++ T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I+L I+ E I L +AQ K I + I+P L D + M+Q+ LNL+SNAVKFT Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEPKL-HADVDCRAMKQIFLNLISNAVKFTP 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + + + SIKD G GI + I + F Q G GLGL I Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V +P + Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTITMPIQQ 768 >gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 538 Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 162/320 (50%), Gaps = 21/320 (6%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 +VA I+ H+ ++L + A +F T I + + +I + Sbjct: 234 AFLVASILNDIIYAHIKKLALLISIIIAATFLTVI-------LLTYFAILTNARKMIKTM 286 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E KS FLA+MSHELRTPLN+I+GF +I G + NE + Sbjct: 287 EQDNIKIKE-------LERLKSEFLATMSHELRTPLNSIIGFVSMILQGISGDI-NEEQR 338 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + +H S HLLNLIN+ILD+S+IEAG+ S+ ++ D++ E + + +K + Sbjct: 339 KQLSMVHSSSIHLLNLINDILDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEV 398 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ +I + V++D+ + Q++LNL+SNA+KFT G + + G IS+ D Sbjct: 399 KLITEIPDEIPEVYSDKTRVFQILLNLVSNAIKFTEK-GEIRIKCE-VDGDKLKISVSDT 456 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E ++ T+ +F Q S + + QG GLGL +++ ++ GG+ + S+ +G Sbjct: 457 GKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTF 516 Query: 469 IAILPNTRVLNFIPEDNHES 488 LP V E+NHE Sbjct: 517 TFTLPLKSVE----ENNHEE 532 >gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 707 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 2/255 (0%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I E + + ++ AE N AKS FLA+MSHELRTPLN+I+GFS+++ + Sbjct: 453 ETGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVY 512 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L N + +G+I SG+HLLNLINEILDLS++EAG +EL S L D+ E ML Sbjct: 513 GEL-NARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDML 571 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A K I++ +I+ L ++ D + + QV+ NL++NAVKF+ V V + Sbjct: 572 FPFAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQ-NNN 630 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S+ D G GIA + + F Q + QG GLGL + + I+ HGG + Sbjct: 631 FIEVSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFK 690 Query: 460 SKLREGVEVIAILPN 474 S++ +G +P Sbjct: 691 SEVGKGSTFGFSIPL 705 >gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 461 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 3/326 (0%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215 LP A+ VA +T + + + + A + + + + K+ + Sbjct: 126 AALPAALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 D EL+ +++ + +E + KS FLA+MSHELRTPL +++G+SE++ Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 GPL E +EY+G I G++LL LI ILD+S+IEAGR L S + + ++R+ Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + L A++K +++ P L + AD +RQ ++NL SNAVKFT GG + V+ Sbjct: 305 VATLLPIARKKGLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEV 363 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D+G GI E + V F Q + G GLGL I +S + HGG+ Sbjct: 364 LPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481 +RS G +LP Sbjct: 424 IRVRSAAGTGSVFTVLLPIRAAPAPA 449 >gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 570 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 31/429 (7%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R I L ++LV + + W+ + L + + L + G + Sbjct: 20 RRSRTIRLLMMVLVGGLLAFNFGWKATLAWAAVNLVLESWLAVLNAWFK--PREDGRTSL 77 Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY-AVF 164 L A W+++ + +P + + +L L I L L A+ Sbjct: 78 AVR--LCPGAAFSATWSVMAALCWIHGSPPMK--FAALIILFGLLIEGLKYASLSQTAML 133 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 P ++AL +M + + T Y+ + L Sbjct: 134 ALIPPPLIALVVAPVMFGGFSGLGRVMAVITLAGLAAYVLDAMRLVRASAL--------- 184 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + A+E N AKS FLA MSHELRTP+N +LG + + + + Sbjct: 185 ---------ALEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQL----D 231 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I +SG L+ ++N+ILDLS+IEA + E + + + R+ + A+ Sbjct: 232 ARQADYVETIVQSGDGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSETAR 291 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K + + + P + D +RQ++LNL+SNA+KFT GRV + + + G I Sbjct: 292 RKGLSLTLDVAPETPQWLAGDPARVRQILLNLVSNALKFTEE-GRVALRIAPHAAGGVEI 350 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G G++ + + T F QG +I G GLGL I + + GG+ S+ Sbjct: 351 TVSDTGAGMSPEQQAKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSRPG 410 Query: 464 EGVEVIAIL 472 EG +L Sbjct: 411 EGSTFTVVL 419 >gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 632 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 2/249 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + AE N AK+ FLA++SHELRTPLNAI+GFS+++ G LN+ Sbjct: 381 ITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLND 440 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K Y+ +I +SG HLL LIN+ILD+S+++AG+ +L + +I + + Sbjct: 441 KELK-YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIA 499 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +KN+ +D + +++ AD+ M Q++ NLL NA+KFT G + + Q +S Sbjct: 500 KKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQ-VS 558 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI E + SF Q + +G GLGL + + + HGG + S++ + Sbjct: 559 VKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGK 618 Query: 465 GVEVIAILP 473 G ++P Sbjct: 619 GSTFTFVIP 627 >gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 729 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 102/256 (39%), Positives = 144/256 (56%), Gaps = 3/256 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I E + A++L E ++ AE N KS FLA+MSHELRTPLN+I+GF++++ + Sbjct: 460 EMCRDITESKAAETLLQE-KQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVY 518 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L NE + +G+I +SG+HLLNLIN ILDLS+IEAG+ ELS L + +L Sbjct: 519 GEL-NERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLL 577 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A KN++I ID SLSS++ADE Q++ NL+ NA+KF+ G V + G Sbjct: 578 SPIADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIEA-RKKGD 636 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D G GI + + F Q + QG GLGL + + I+ HGG R Sbjct: 637 LVEITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFR 696 Query: 460 SKLREGVEVIAILPNT 475 SK EG ++P Sbjct: 697 SKPGEGSTFAFVIPIE 712 >gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 179/449 (39%), Gaps = 19/449 (4%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 + FR L +A + T+ W + + + + + + ++ Sbjct: 10 AQVRFRELKTRVGLALFIAGTAWFLTKGLWPIGWFAVVVVTQFIDWLVFRP-TRLNTQMP 68 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 +R+ + + + ++ ++ T L +S + + P Sbjct: 69 LSRAYRVVMCLTTTLNVVVYSAISAYLWMTGGEAGRLFAIIQVAGGLLHVSLHMHHVRPL 128 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + + L + ++ + + + T++ + +S++ + Q Sbjct: 129 LLSAVVPHSLYFLGLPIMGAVLDGQPQDVLIAIGGVLYMTHLIVAVRQSSMTTRALQD-- 186 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 A + R++AE + AKS FLA +SHE+RTP+NA++ + ++ + Sbjct: 187 ---------ANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLLRRTRL-- 235 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +E++ + +G L+ L+N++LD S+IEAG+ +L I L D + I + + Sbjct: 236 --DREQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEP 293 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 +A + + ID + + D ++Q++ NLLSNAVKFT G + + V W Sbjct: 294 KASANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFT-EDGTISIAVDWRAEDG 352 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S+ D G GI + + SF Q G GLGL I++ + GG+ Sbjct: 353 RLIVSVADTGCGIPADRLAHIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAE 412 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488 S EG LP + E + Sbjct: 413 SVEGEGSVFTLSLPVEVAEASVVEPKRRA 441 >gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] Length = 858 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 150/357 (42%), Gaps = 3/357 (0%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + TLLI + + A Q + LA Sbjct: 224 FFGVFAVGTTLLIWQIRRTVVIPIQRLTAAARAIGTGSATREQMAVFDQPQMQQLARRGD 283 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + + ELE A ++ E RK AE+ N KS+F+A Sbjct: 284 EPGELARSFQSMAHEVADREQNLNTAVMQRTEELEQALKIAGEARKEAEDANQTKSQFVA 343 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAI+G+SE++ E+ N Y + I SG+HLL L+N+ILD+SRI Sbjct: 344 NMSHELRTPLNAIIGYSEILLEESED-DGNTQYAPDLERILNSGKHLLALVNDILDISRI 402 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG+ EL + + ++ I + + + + D SL + D RQ++LN Sbjct: 403 EAGKMELYLESFPICREIQTVIDTARPVIDKNQNSLVFECDDSLGHMRGDLTKFRQILLN 462 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+SNA KFT + G + ++V I++ D G G+ E ++ + F Q + Sbjct: 463 LISNAAKFTQV-GTLTLSVRREDTDHFTIAVADTGIGMNEEQLGRLFQVFSQADASTTRK 521 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G GLGL I++ GG S G LP T V + +T Sbjct: 522 YGGSGLGLSISRHFARMMGGDITATSTPGSGSVFTVSLPLT-VEPQTQTEPANATDI 577 >gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 461 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 157/320 (49%), Gaps = 3/320 (0%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215 LP A+ VA +T + + + + A + + + + K+ + Sbjct: 126 AALPPALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 D EL+ +++ + +E + KS FLA+MSHELRTPL +++G+SE++ Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 GPL E +EY+G I G++LL LI ILD+S+IEAGR L S + + ++R+ Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + L A++K +++ P L + AD +RQ ++NL SNAVKFT GG + V Sbjct: 305 VATLLPIARKKGLKVSCDPSP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEV 363 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I + D+G GI E + V F Q + G GLGL I +S + HGG+ Sbjct: 364 LQGERLAIHVVDSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423 Query: 456 FLIRSKLREGVEVIAILPNT 475 +RS G +LP Sbjct: 424 IRVRSAAGTGSIFTVLLPIR 443 >gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120] gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] Length = 575 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 10/328 (3%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L V + + A+ + + +A ++ + + Sbjct: 247 RLIVMVSMLVSVAIAAIVAWRTSRAIAEPVIMVTQVAEQVARKPNFDLRAPVTTEDEIGL 306 Query: 218 QAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A+ + LI + ++ ++ AE + AKS FLA++SHELRTPLNA++G S++++ Sbjct: 307 LAKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKD 366 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + + + I+ +G+HLL LIN+ILDLS+IEAG+ L ++ ++ + Sbjct: 367 DAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVV 426 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + ++ ++ N + D L +++AD+ MRQV+LNLLSNA KFT GR+ +TV Sbjct: 427 VTVKPTIEKNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFT-TNGRIKLTVRRE 485 Query: 397 SG--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 ++ D G G++ + + F QG + G GLGL I++ Sbjct: 486 KEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHF 545 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 GG+ +++S+L G LP Sbjct: 546 CQMMGGEIIVKSQLGLGSTFTVYLPLQE 573 >gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K] gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K] Length = 461 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 3/320 (0%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALSFFTYITYHLFKSNVKIL 215 LP A+ VA +T + + + + A + + + + K+ + Sbjct: 126 AALPAALTGIAEDFDVAQATGYLAKIRRVSVPTAEKILKHFMDLLDVMVFTGHKNLIAAK 185 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 D EL+ +++ + +E + KS FLA+MSHELRTPL +++G+SE++ Sbjct: 186 LHIEAVTDSYRELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMML 245 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 GPL E +EY+G I G++LL LI ILD+S+IEAGR L S + + ++R+ Sbjct: 246 EGLGGPLTAE-QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDA 304 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + L A++K +++ P L + AD +RQ ++NL SNAVKFT GG + V+ Sbjct: 305 VATLLPIARKKGLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEV 363 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D+G GI E + V F Q + G GLGL I +S + HGG+ Sbjct: 364 LPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGE 423 Query: 456 FLIRSKLREGVEVIAILPNT 475 +RS G +LP Sbjct: 424 IRVRSAAGTGSVFTVLLPIR 443 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 148/269 (55%), Gaps = 1/269 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + L+ ++ L +L+V + + K FLA+MSHELRTPLN Sbjct: 1070 QLLQQIANQLAIAIQQASLFEQLQVEIEDKQQKNAELDRATRLKDEFLANMSHELRTPLN 1129 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILG +E ++ E G + NE ++ + I ++G HLL LIN+ILD+S+IE+G+ EL ++ Sbjct: 1130 AILGMTEGLQDEIFGQI-NERQRKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTS 1188 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +I + + + ++ +A +K I++ I ++ + DE+ +RQVI+NLL+NAVKFT Sbjct: 1189 TEIIPLCQSSLAFVKQQAVKKRIQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPE 1248 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG+V + V ++KD G GIA IP + F Q A+ G GLGL + Sbjct: 1249 GGKVGLEVVQIGENTVRFAVKDTGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALV 1308 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ HGG+ + S+L G LP Sbjct: 1309 KRLVDLHGGEVSVTSELGVGSCFSVDLPL 1337 >gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 871 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 6/246 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + + + ++ AE AK +FLA+MSHE+RTP+NAI G ++++ NE K Sbjct: 478 QQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRR----NPNEDQK 533 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I +S LL +IN+ILD+S+IEAG+ EL S++++V ++Q +A+EK + Sbjct: 534 EYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKAEEKGL 593 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR-GQYISIK 406 + + I +V D +RQ++LNL+ NA+KFT G V + + ++ Sbjct: 594 GLLKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKGLVTTSVKSEQVGDKINVHFTVS 653 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + SF Q G GLGL I++ ++ H G+ + S+ +G Sbjct: 654 DTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVESEKGKGS 713 Query: 467 EVIAIL 472 + + Sbjct: 714 QFHFTI 719 >gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 145/256 (56%), Gaps = 1/256 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + A++ ++ AE N AKS+FLA++SHELRTPLNA++GFSE I GP Sbjct: 199 RDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILAGATGPA 258 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ IH +GQHL LI +ILD+SRIEAGR EL E ++VR +L+ + Sbjct: 259 SLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHK 318 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A ++ I P L + D + +RQV+LNL NA+KFT GGRV ++ Sbjct: 319 AVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHVPEGLA- 377 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++++D G GIA V +F Q ++ QG GLGL I + + HGG + S+ Sbjct: 378 LTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLASEA 437 Query: 463 REGVEVIAILPNTRVL 478 +G + +LP +R++ Sbjct: 438 GKGTRITVLLPASRII 453 >gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 625 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 12/283 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +K L ++ + A+ N AKS FLA+MSHELRTPL ++G S + Sbjct: 214 QVQQQKQTLERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLL 273 Query: 276 L-----ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + L E K Y+ IH SG++LL LIN+ILDLS++E+G+ L S SL Sbjct: 274 RLYSQPDNFPALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQK 333 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + ++C+ L+ A+EK + + +I AD + +RQ++LNLLSNA+KFT GGRV Sbjct: 334 LAQQCLHTLRDFAKEKGVNVNLQIKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVT 393 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +TV + +KD G GI++ + + F Q + G GLGL + + ++ Sbjct: 394 LTVSR-KDKTAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVE 452 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 HGG S++ G + +P P N S+ YK Sbjct: 453 LHGGSIQFESEVGLGTKFTVYIPI------QPLINKSSSNYKT 489 >gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C] Length = 769 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E E ++RAE N AKS FLA++SHELRTPL Sbjct: 499 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE++ T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 559 NAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRK 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I+L I+ E I L +AQ K I + I+ L D + M+Q+ LNL+SNAVKFT Sbjct: 619 NINLEPIISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTP 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + + + SIKD G GI + I + F Q G GLGL I Sbjct: 678 SGGSIDIRA-FQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V I+P + Sbjct: 737 SRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 780 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 8/263 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E A+ +++AE N KS FLA MSHE+RTP+N+ILG +E++ + P Sbjct: 377 HDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSESPLTP- 435 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ R+G LL LIN+ILDLS++EAGR EL +L ++++ + +L+ Sbjct: 436 ---EQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENL 492 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A+E+ + + + + ++ D +RQ+++NL+ NA+KFT G V ++V +S Sbjct: 493 ARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHD-GSVKISVEKSSDDAT 551 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G GIAE + +V F Q + G GLGL I ++ GG+ ++ Sbjct: 552 NLLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLK 611 Query: 460 SKLREGVEVIAILPNTRVLNFIP 482 S L EG LP V P Sbjct: 612 SALGEGSCFTFTLPLPPVQIDEP 634 >gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 705 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + A + ++ AE N AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 415 EDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELG 474 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + I+ +G++LL LIN+ILD+S+IEAGR +L A + ++ + Q Sbjct: 475 YEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDISSLLESVMGTAQPL 533 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395 + N + ++ ++AD +RQ++LNLLSNA KFT G++ + V Sbjct: 534 MSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TNGKIKLEVSRVSSLPYS 592 Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 SG + D G G+++ + + F QG + G GLGL I+ GG Sbjct: 593 QESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGG 652 Query: 455 QFLIRSKLREGVEVIAILPNT 475 + S L EG ++P Sbjct: 653 NIQVESTLGEGSTFKVVIPTR 673 >gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 815 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 6/234 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A+E + KS F+A++SHEL+TPL AI G+SE++ + P E + Y I++ + L Sbjct: 460 AKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP---ERVRNYYQIIYKESERL 516 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+N++L++SRIE+GR EL + + + I++E Q R + I + + V Sbjct: 517 TQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSKH--TIVLQFPEYPTFV 574 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QV NLL NA+K++ GG V V V I ++D G GI +P + Sbjct: 575 LGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMED-ILIEVQDQGVGIPPEHLPHIF 633 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + +++ + G GLGL I +SI+ HGG+ SK+ EG LP Sbjct: 634 DRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEGTTFTIRLPRR 687 >gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 575 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 145/307 (47%), Gaps = 11/307 (3%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + V V I S+ +FF LF +++ L + L Sbjct: 274 VWSVGVVTPVPFITSIVRSIYLKQATFMIITTFFI-----LFFTSLISLIFFSWNRKLEE 328 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E++ + + +R ++ N K+ FL+ +SHEL+TPL AI SE + E + ET Sbjct: 329 EVDKKTEQLENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDY---DRET 385 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +E + I R+ +++++LD+SRIE+GR E + L +I+ I M++ A + Sbjct: 386 QEEMLDLIIRNIDRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKH 445 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISI 405 I I +++D V AD+ + +V +NLL+NA+KFTA G + + T G IS+ Sbjct: 446 GIAIERELDND-PRVKADKDKLLRVFVNLLNNAIKFTADRGESIKIKTEET-GDFVEISV 503 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI E E + F Q + G GLGL I + I+ HGG ++S+ G Sbjct: 504 IDKGIGIPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVG 563 Query: 466 VEVIAIL 472 + L Sbjct: 564 STFVFTL 570 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 144/257 (56%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKR-----AE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 I E + A+ E+ +R AE K FLASMSHELRTPLNAILG +E ++ E Sbjct: 1292 ITERKQAEKQLRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEE 1351 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L + + I +SG+HLL+LIN+ILDLS+IE+G+ LS S +S+ + + Sbjct: 1352 VYGSLT-PKQHKSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLT 1410 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ +AQ+KNI + I P LS + DE+ +RQV++NLLSNAVKFT GG+V + V Sbjct: 1411 FIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDP 1470 Query: 398 GRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +S+ D G GIA + + F Q ++ G GLGL + + I+ GG Sbjct: 1471 DGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSI 1530 Query: 457 LIRSKLREGVEVIAILP 473 + S++ +G LP Sbjct: 1531 ALESEVGKGSCFTVNLP 1547 >gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] Length = 849 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 174/305 (57%), Gaps = 6/305 (1%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS-DETRKRAEEENLA 248 + A K N + + E E + + ++ + RAEE N + Sbjct: 538 GLVSVGADITALKDQQRALKDNDREMRRTVENLRRSQERVQELAANYEQEKIRAEEANRS 597 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLNAI GFSE++ E GPL +E Y++Y+ DI SGQHLL+LIN+I Sbjct: 598 KSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLLSLINDI 657 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAG+ +L + +++ +C+ +++ RA+EK+IE+ + L + AD + + Sbjct: 658 LDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTVEGSE-LPEITADPRAL 716 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QVILNL+SNAVKFT GG+V + G+ + G + + D G GI+E ++ V F Q Sbjct: 717 KQVILNLMSNAVKFTPEGGKVKLR-GFQAADGVVLQVSDTGIGISEDDLQRVGRPFEQIE 775 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDN 485 QG GLGL +++S++ HGG I S+L EG V LP ++ P + Sbjct: 776 SQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLPAEPIVADAGPAPRPS 835 Query: 486 HESTQ 490 ++ Q Sbjct: 836 GQAAQ 840 >gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1] gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 501 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 164/362 (45%), Gaps = 16/362 (4%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-AL 174 L W + + +P + ++ A+++ + +L + + + L Sbjct: 1 MTALVWASGSFLFFVPNSPADQIVLVLIY--TGITSGAIASLSVRKEYYLVYLFLFLSPL 58 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + S + + ++ +L F T ++ F+ + E DLI + Sbjct: 59 AYLFYTSHNEISTTVIILLVIYGIFLTSLSLKYFQMINDGFKIRYENLDLIKD------- 111 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + A+ + KS FLA+MSHE+RTP+ ILGF E + N+ I Sbjct: 112 LQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAK----KENDPERLRQFNII 167 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +SGQ LL++IN+ILDLS+IE+G+ L L + + I + + KNI++ ++I Sbjct: 168 TKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHKEI 227 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412 D L + D+ +QVILNLLSNA+KFT GG + + + + +++D G GI Sbjct: 228 DEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGLGI 287 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + + +F Q + G GLGL I+ ++ GQ ++S L EG + Sbjct: 288 GKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYLDV 347 Query: 473 PN 474 P Sbjct: 348 PV 349 >gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 639 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 11/323 (3%) Query: 157 FMLPYAVFLSFFPVVVALS--TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 L L +V L ++ + ++S A IT K N +I Sbjct: 145 LWLLSITLLQTGLIVAGLLYIVLTMIVRPIQNVSRAMSDFEGGFTPNKITGRSRKFNDEI 204 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + IA+LE+ + +++AE N+ KS FLA+MSHE+RTP+N I+G + ++ Sbjct: 205 TQLIKKYNACIAQLEINYQQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLL 264 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E + ++ K Y+ + S LL++IN+ILD S+IEAG + LS + ++ + Sbjct: 265 EETS----PSDIQKNYLDILTSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQ 320 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +RA +K + I+P+L + D+ ++QV+ NL+ NA+KFT G + + V Sbjct: 321 QSNEYSVRAAQKQLMFQCNIEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQ-GHIELKV 379 Query: 394 ---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 YI IKD G GI + + ++ F Q + G GLGL I++ I+ Sbjct: 380 NSLHIEQHPHLYIEIKDTGIGIDKDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVE 439 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 GG+ + S++ G +P Sbjct: 440 MMGGELKVTSEVGLGSSFYFTIP 462 >gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 969 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 12/300 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + + + I E + ++ R++AE N AKS FLA+MSHE+ Sbjct: 551 LRTQAWIQRDSQGKAEQVSGLVFDITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEI 610 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NA++G EV+ + ++ + YI + +G+ LL+LIN ILDLS+IE+GR E Sbjct: 611 RTPMNAVIGMGEVLLETKL----DQEQRHYIETLQHAGEALLDLINAILDLSKIESGRME 666 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L E L +V E + Q++ +++ IE+ + S + + D+ +RQ++ NL+ NA Sbjct: 667 LVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNA 726 Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 VKFT G V V + + I D+G GI + T+ F Q ++ G Sbjct: 727 VKFTDE-GSVTVEIRSIEQEKTLLFKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGS 785 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-----FIPEDNHESTQYKC 493 GLGL I + ++ + G+ + S+ +G LP P D + K Sbjct: 786 GLGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLPCRPTAPKAEIISNPHDAQQKQSKKA 845 >gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1407 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 135/271 (49%), Gaps = 9/271 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + V + + + L L + R AE N AKS FLA+MSHE+RTPLN Sbjct: 852 LEEQAVHLQILNEKLEQQYGRLAQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNG 911 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G + ++E + +E +EY I G+ LL +IN+ILD S+IE+G+ EL + I Sbjct: 912 VIGMTALLEDTPL----SEEQREYAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPI 967 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L + E + M +A + +++ +IDP + D +RQ+++NL+ NAVKFT Sbjct: 968 ELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVPPQILGDSLRLRQILINLVGNAVKFTHQ 1027 Query: 386 G----GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G G V V +++D G GI +I + +F Q + G GLG Sbjct: 1028 GEVMVGVQLVAVRPDQAVELAFTVRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLG 1087 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I+Q ++ GG + S++ +G L Sbjct: 1088 LIISQRLIELMGGVIRVESEVGKGTAFRFTL 1118 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 12/263 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + E + + ++ R+ AE + AKS FLA+MSHE+RTP+NA++G S+++ + Sbjct: 516 QHDVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL-- 573 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 NE ++ + IH+S + LL +IN+ILD S+IE+GR EL L ++V + + Sbjct: 574 --NEEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGD 631 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 + +E+ I P L + D + Q+++NLLSNA KFT GG V + + Sbjct: 632 KVHAGGLELLYDIPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVA 691 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++D G G+++ ++ + F Q + G GLGL I++ ++ GG+ Sbjct: 692 NDQATLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGE 751 Query: 456 FLIRSKLREGVE--VIAILPNTR 476 + S +G LP R Sbjct: 752 LEVESAPGKGSTFSFTLTLPLGR 774 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 90/271 (33%), Positives = 151/271 (55%), Gaps = 12/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E+ AK +++ AE+ + AKS FLA+MSHE+RTP+N ILGF+EV+ + + P Sbjct: 516 VTEVAKAKRQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSP--- 572 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + I + G+ L++LIN+ILDLS+IE+G+ + E++ SL ++ E + +++ + Sbjct: 573 -QQQESVKIIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFL 631 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 E+N+E+ I+ +L + D +RQV+ NL+SNA KFT G V ++V S G Sbjct: 632 EQNVEMKIDIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQ-GYVKISVAEESISGADH 690 Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I+D G GI + ++ + +F Q + G GLGL I +S+ GG+ Sbjct: 691 QIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEIN 750 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + S++ +G +P +V E ES Sbjct: 751 VESQVNKGSIFSFYIPVNKVEISEEEKLMES 781 >gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] Length = 807 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 13/321 (4%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 Y + + +S + ++A LAT ++ F + + + Sbjct: 378 YVLIVGLIGFYALFLMFIWLSSKQMSQAIAQPLATIQDMVHKVSLGDFNVSHRRFRLKEL 437 Query: 221 KD------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 D + +L+ + + +AE N+AKS+F++++SHE+RTP+N+ILG S ++ Sbjct: 438 DDTADSVMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLL 497 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + ++ + ++ I +SG+HLL+LIN+ILD+S+I+AG+ ++ E L +V + Sbjct: 498 MTSNL----SDDQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYD 553 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + + +A++ +++ +D SL + D ++Q++LN +SNA+KFT G + V Sbjct: 554 VHDIFEYKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQG 613 Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 TS +S++DNG G++ + V SF Q + G GLGL I + I Sbjct: 614 AVTSESVFALRLSVEDNGIGLSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHL 673 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG+ + S+L +G L Sbjct: 674 MGGEVGVESRLGDGSTFWLTL 694 >gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 572 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 Q + L + + + + AE+ N+AKS FLA MSHELRTP+N ++GF+ + Sbjct: 164 REELQLQNRSLEETVAKRTAAFLKAKDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASL 223 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + M ++ +++ I SG LL++IN+ILD S+IEAGR EL + +L + ++ Sbjct: 224 LLETQM----DDEQTDFVETIRNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQ 279 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E I + A EK +++ + +L V D +RQV+LNL+SNA+KFT GG V +T Sbjct: 280 EVISITTPIASEKELKLDLEYSDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGG-VTIT 338 Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S I++ D G GI++ + F Q + + G GLGL I++ + Sbjct: 339 ATPNSNSDTHSMVRIAVSDTGIGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRL 398 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 GG I S EG Sbjct: 399 SEMMGGDITIDSSPGEGSTFNFT 421 >gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 752 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 4/305 (1%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKILSCQAEKDDLIAELE 229 L I + G L T + I H L K+ E D + + E Sbjct: 437 ILLLSDIWLNFYDRPTAGGGLVTVGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQSE 496 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E + +AE+ + AKS FLA+MSHELRTPLNAI GFSE++ E GPL +E Y Sbjct: 497 EHARKYAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIG 556 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y DI SGQHLL++IN+ILD+++IEAG+ +S I ++ V + M++ RA +K+I+ Sbjct: 557 YAEDILSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDID 616 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + + + D + ++Q++LNL+SNA+KFT GG ++++V +S+ DNG Sbjct: 617 LNLTVKDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISV-VKENAFVRVSVADNG 675 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + +IP + F Q S +G GLGL + +S HGG+ I S+ EG V Sbjct: 676 IGIPKQDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVS 735 Query: 470 AILPN 474 +LP Sbjct: 736 FLLPV 740 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ ++ +T + K FLA+MSHELRTPLNAILG +E ++ E G L Sbjct: 675 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 734 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K+ + I RS HLL LIN+ILDL++IEAG +L + S+ + + I ++ + Sbjct: 735 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 793 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396 A +K I I +I +L ++ DE+ +RQV++NLL+NAVKFT G++ + V + Sbjct: 794 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 853 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G GI E ++ + F Q A+ +G GLGL + + I+ HGG Sbjct: 854 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 913 Query: 457 LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491 + SK+ G + I +P +L P + ++ + Sbjct: 914 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 950 >gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 583 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 193/454 (42%), Gaps = 16/454 (3%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS--LGKKVMNSDIKIGEVYV 105 +S + L + I ++ + L ++A +L ++ + + + Sbjct: 114 ISLLRAPLSLPASTISVLDLLCLAGSLFYGLALMLHAVHLHKVEAQRARRRNPDLLPLIH 173 Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 +V G W L E P + + + L A+ Sbjct: 174 QLGDFVVVHDRSGTAWALNRHFEHHLGLPPDDLMGRGLFD----HVHVLDRPAFLRAIAD 229 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY----ITYHLFKSNVKILSCQAEK 221 + + T + S+ ++ + Sbjct: 230 AAGGEGASNITIRLRGRGEDLSSVEPCFRWFDVCINRFENGHAKKREEAEADDQAMIIGV 289 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I+ + + D R AE N AK RFLA+MSHELRTPLNAI+GFSE++ + P Sbjct: 290 YRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEMLADPQLCP 349 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +EY IH SG+HLL+++N ILD+S+I +G + L I L ++ C ML+ Sbjct: 350 QDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIASCCAMLRP 409 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--R 399 +A+ K IE+ Q + AD++ +Q++LNLLSNAVKFT GRV + V Sbjct: 410 QAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVDCVVDCLD 469 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+++D G GI+ ++ + F Q + + +G GLGL I + ++ HGG LI Sbjct: 470 DIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELHGGTLLIE 529 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 S+ +G +I LP P+D E +++ Sbjct: 530 SEPDQGTSMIVRLPR----EGRPQDKTEGREWRT 559 >gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 813 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 144/250 (57%), Gaps = 2/250 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + + AE N AK+ F+ +MSHELRTPLNA++GFS+++ ET+GPL N Sbjct: 533 ITERKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPL-N 591 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y +I +SG HLL++IN++LD+S++E G EL + + I+ E +L + Sbjct: 592 EKQKRYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSA 651 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +KNI I I+ L +V AD ++Q++ N+L+NA+KF++ G+V++ IS Sbjct: 652 DKNIIIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPRED-MIEIS 710 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + V F Q +I GVGLGL + + + HGG+ +++ Sbjct: 711 VEDEGIGIQESDYEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGG 770 Query: 465 GVEVIAILPN 474 G +P Sbjct: 771 GSIFTFRIPK 780 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 10/273 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + S K+ L ++ + + ++ AE N AKS FLA+MSHE+RTP+ Sbjct: 507 RDVTERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQAKSEFLANMSHEIRTPM 566 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+I+G S + + N+ + YI + S + LLN+IN+ILD S+IEA + ++ Sbjct: 567 NSIIGMSSLALQTPL----NDKQRGYIEKVSHSAESLLNIINDILDFSKIEARKMDIENV 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L ++ + +L+L+ +EK +E+ ID + V D +RQ++LNL +NAVKFT Sbjct: 623 PFMLPSLIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRLRQILLNLGNNAVKFT 682 Query: 384 AIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G + + + + S++D G GI++ + + SF Q + G G Sbjct: 683 QQ-GEIIIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFSQADTSTTRRFGGTG 741 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I++ ++ GG + S+ +G + Sbjct: 742 LGLAISKRLIQLMGGDIWVESEENKGSTFHFTI 774 >gi|311103649|ref|YP_003976502.1| His Kinase A phosphoacceptor domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310758338|gb|ADP13787.1| His Kinase A phosphoacceptor domain protein 1 [Achromobacter xylosoxidans A8] Length = 609 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 93/464 (20%), Positives = 175/464 (37%), Gaps = 20/464 (4%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP-- 73 + P P + I + V++L R P L+ A + + Sbjct: 1 MQPAIGPTSASTPPSSSYAARIRQVQVDALRRSFPFALAGSLISACFSAFALVGVLPLHE 60 Query: 74 --MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 +W TL V + W +L G + G+ W L Sbjct: 61 IMLWLGATLMVGVLRWAAVVAYDRRRADPAAAQRWVRRMLAGNLCSGILWGLPLAYWTFF 120 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 EY + + SN+ML ++ P + + ++L Sbjct: 121 VPLEYQLFFIVILFGLGTGAI-YSNYMLLPVMYAFEVPAFAPMFIALAAQPSAIHLALVT 179 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 L + + ++++ L E L+ ++ + AE +L KSR Sbjct: 180 GGLAYLIATLAFIHRMNRTHLDALRLGYENLALLEQVRQ-------EKIAAERSDLEKSR 232 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+ SH+LR P++A+ F ++ E + + + +I + + +L + +L+L Sbjct: 233 FLAAASHDLRQPVHAVNLFLGLLANEPLSRHG----RYLVDNITSALSAMGHLFDALLNL 288 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 SR++AG E + ++ + +A EK + + + P +SV +D + ++ Sbjct: 289 SRLDAGVIEPRFETFRMQPLLDQLKAEYAPQAGEKGMRLRVR--PCAASVRSDPVLLERM 346 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NL+SNA+ + GG V V G + + DNG GI + E V F Q + Sbjct: 347 LRNLISNAIVHS-DGGCVLVGCRRV-GNRLRVEVWDNGSGIPKAEQERVFWEFHQLANPE 404 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +G+GLGL I + G + +RS+ +P + Sbjct: 405 RDRSKGLGLGLAIVRRTARLLGHELALRSEAGRSTVFTVTVPAS 448 >gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden] Length = 477 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 152/256 (59%), Gaps = 1/256 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++++ E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+I+ E+ Sbjct: 212 YRNTRMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSES 271 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +GP+ N YKEYI DIH SG HLL+LIN+ILD S+ EA + + L IV C M Sbjct: 272 LGPIENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNM 331 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397 + RA++ + + + + + AD K ++QVI+NLLSN++KFT G V + V + Sbjct: 332 MIPRAEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLE 391 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + I I D G GIA+ ++ V++ FGQ +G GLGLP+++ ++ G F Sbjct: 392 DKLIIIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFK 451 Query: 458 IRSKLREGVEVIAILP 473 I+S+ G + P Sbjct: 452 IKSEPNSGTVITLTFP 467 >gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] Length = 908 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 116/439 (26%), Positives = 186/439 (42%), Gaps = 21/439 (4%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 LF +L L + NP F +S+ T +K+ E Sbjct: 223 LFASCFVLFFMSLNGYGFYYLWPNNPKFQQYSVFTFIAVTLIFLAE--FTIRFLKVRERR 280 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA------TLLIALSISALSNFM 158 +W +WLL L++ + + ++ S TL+ + L N Sbjct: 281 IWYLWLLELVQYTSAI-ALISCLFFSYEVMIQILMFLSIFAAGTCTLVGFGARQYLGNAA 339 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKIL 215 L Y +AL + + A + + + Sbjct: 340 LIYTSAWIMVACGIALLALNKFGVLPSNWVTQYSVPAAAALQALLLSFALGYRIQDEQRN 399 Query: 216 SCQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 AEK+ L L+ A++ S + R AE E+ AK+ FLA MSHE+RTPLN I+G S++ Sbjct: 400 REIAEKNALKERLKANQAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDL 459 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ M NET Y+ I+ SG+ LL +IN+ILD S+I AG+ E+ I L+D++ Sbjct: 460 LKNTNM----NETQSRYVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLD 515 Query: 334 ECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +C + ++K+I++ + + + +D +RQVILN LSNA+KFT G V + Sbjct: 516 QCAGIFAKDIEKKDIDVTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQK-GSVQLI 574 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + G + +KD G GI + ++ +F Q + G GLGL I + I Sbjct: 575 LS-VEGNTLNLKVKDTGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELM 633 Query: 453 GGQFLIRSKLREGVEVIAI 471 GG + S EG Sbjct: 634 GGGVSVESNENEGSVFEFY 652 >gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297] gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297] Length = 951 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 100/491 (20%), Positives = 182/491 (37%), Gaps = 22/491 (4%) Query: 7 NKEKDVGLLISPTGDHLGLEYPSK-MDFDREIITLHVESLFRVSPILPL-FVLLVANIGT 64 ++K + L + D D E++ + + A Sbjct: 36 QQKKAFAERTETVANRLADTLSAPVADADDELLETLIRRSLNERDARSIRLFNASAAEWA 95 Query: 65 WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 +P+ P + + L G + + + R L W L Sbjct: 96 MHGPSPLGPAYPISISDTRQLRLYEGDRTFRYLVPVFSPEDLR---TALPSPRPLGWVEL 152 Query: 125 TL-VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA----- 178 + + LL+AL I + F L + ++ + Sbjct: 153 EFDYASTQVGHYQTILRNLSLLLVALFIISGIAFYLNREITRPVQSMIKTVVDIREGNLE 212 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 L + + I + + + + +E+ D Sbjct: 213 SRVPETSKGELRELEEGINAMAMTIKDAYNDMQNSVEQATLDLRETLETIEIQNIELDMA 272 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ A++ N K+ FLA+MSHE+RTPLN I+GF+ ++ + ++YI I S Sbjct: 273 RREAQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSNLTK----KQEDYISTIMSSS 328 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q LL +IN++LD +IEAG+ L + +L + + E + ML + KN+E+ + Sbjct: 329 QVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFADV 388 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 + D ++QV+ NL+SNA+KFT G V + +G +S+ D G G++ Sbjct: 389 PEQLVFDPLRLKQVLTNLISNAIKFTNE-GSVVIRTMIEQQQGNKVTVRVSVTDTGIGLS 447 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + +F Q + G GLGL I++ ++ GG + SK EG + Sbjct: 448 KTQQKALFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGSTFWFNI- 506 Query: 474 NTRVLNFIPED 484 V + Sbjct: 507 KADVAPAAQQP 517 >gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 772 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 110/272 (40%), Positives = 150/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E ++RAE N AKS FLA++SHELRTPL Sbjct: 502 KSLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPL 561 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ YKEY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 562 NAILGFSDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 621 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L I+ E + L +AQEK + + + I P L D + +RQ+ LNL+SNAVKFT Sbjct: 622 NIDLGPIISEAVRTLTPQAQEKKVSVTENIAPKL-HAEVDCRAIRQIFLNLISNAVKFTP 680 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + V + IKD G GI + I + F Q G GLGL I Sbjct: 681 SGGNIDV-CAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTHTGSGLGLAI 739 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V +P + Sbjct: 740 SRSLVKLHKGKLEITSKEEKGTTVTITMPIQQ 771 >gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 568 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 6/270 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNA 266 S +ILS + L+ + + DE ++RAE + KS FLA+MSHELRTPLN+ Sbjct: 299 SVAEILSIGIDITQLVHTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNS 358 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GF+ ++ GP+N+E K+ +G + S HLL+LI+++LD+S+IEAG+ ++ Sbjct: 359 IIGFTGILLQGLSGPINDEQAKQ-LGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPF 417 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L + + + + ++ A++K +++ + + ++ D + + QV+LNLLSNA+KFT G Sbjct: 418 DLRESILKVVQSVRPLAEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQG 477 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V V+ G S++D+G GI + E+ + F Q + +G GLGL I++ Sbjct: 478 G-VRVSCGREGDAFLT-SVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISK 535 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ GG+ + S +G LP R Sbjct: 536 KLVELMGGEIRVESSPGKGSTFAFTLPLER 565 >gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 364 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 3/286 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLA 248 G + +IT + + +K ++ A+ +++ R + +E + Sbjct: 73 GFVRDYALAIRHITNRVTDVLYNASVYKDDKGRVLGVFAAARDVTERKRFEQSLQEASRM 132 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLN I+GF+E + G L N KEY+GDI SG+HLL LIN++ Sbjct: 133 KSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTL-NPKQKEYLGDILNSGKHLLQLINDV 191 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDL+++EAG+ +L+ + L + E + + AQ+K+I + + P LS V D++ Sbjct: 192 LDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIHVRLTVAPELSCVTLDQQKF 251 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QV+ NLLSN +KFT GG V + G +S+KD G GI +I + F Q Sbjct: 252 KQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTGIGIKPEDIQRLFREFEQLE 311 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL + + ++ GG + S++ G +LP Sbjct: 312 SGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFSVVLPL 357 >gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 575 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 11/327 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSC 217 + V +A S + + + + + +I Sbjct: 248 LIVMVSMLVSVAIAAIVAWRTSRAIAEPVITVTQVAEQVARKPNFDLRAPVTTEDEIGLL 307 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + LI + ++ ++ AE + AKS FLA++SHELRTPLNA++G S++++ + Sbjct: 308 AKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDD 367 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + + I+ +G+HLL LIN+ILDLS+IEAG+ L ++ ++ ++ Sbjct: 368 AADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVL 427 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ ++ N + D L +++AD+ MRQV+LNLLSNA KFT G + +TV Sbjct: 428 TVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFT-TNGSIKLTVRREK 486 Query: 398 G--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++ D G G++ + + F QG + G GLGL I++ Sbjct: 487 EDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRHFC 546 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476 GG+ +++S+ G LP Sbjct: 547 QMMGGEIIVKSQPGLGSTFTVYLPLQE 573 >gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 572 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 93/255 (36%), Positives = 144/255 (56%), Gaps = 2/255 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + +S + AE + AKS FLASMSHELRTPLN+I+GFS+++ + GPL N Sbjct: 303 ITDNRKMQSELVRAKMEAEIASKAKSEFLASMSHELRTPLNSIIGFSDMLLTQNFGPL-N 361 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ +I SG HLL LIN ILDLS++EAG+ EL S++D + E ++L A Sbjct: 362 KKQLRYVNNISVSGNHLLKLINGILDLSKVEAGKMELKVEEFSVLDSISEVKVLLTPLAS 421 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K+I+I +D L+++ AD +Q++ NL+ NA+KFT G V V G I Sbjct: 422 KKDIQILSVVDKELTTIRADRTKFKQILYNLVDNAIKFTHEDGFVIVDA-RVEGDQAKIM 480 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI++ + + F Q + ++G GLGL + + + H G+ + S+ E Sbjct: 481 VKDTGIGISKAGVKKIFQPFTQLENSEYGKQKGTGLGLSLVKKFVEMHTGKIWVESEFGE 540 Query: 465 GVEVIAILPNTRVLN 479 G + I +P + + Sbjct: 541 GSKFIFTIPLSLTIP 555 >gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 911 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 117/283 (41%), Positives = 167/283 (59%), Gaps = 10/283 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K+ + QA DL + E E + RAEE N +KS FLA+MSHELRTPLN Sbjct: 584 QLRKTVDDVKRSQARIADLAKKYE-------EEKIRAEEANRSKSEFLANMSHELRTPLN 636 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI GFSE++ E GPL ++ Y Y+ DI SG+HLL LIN+ILD+S+IEAG+ +L Sbjct: 637 AINGFSEIMMQEMFGPLGDDRYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEP 696 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 ++V + I +++ RA+EK +++ + L + D + +QV++NL+SNAVKFT Sbjct: 697 TDASELVEQSIRIVRGRAEEKQLKLRADVS-DLPEIEVDPRAFKQVMINLVSNAVKFTPE 755 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGRV V G+ SG G + D G GIA+ ++P + F Q + QG GLGL ++ Sbjct: 756 GGRVTVR-GFLSGLGVAFQVSDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALS 814 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 +S++ HGG I S L EG V +LP ++ IP D +S Sbjct: 815 KSLIELHGGTLSIDSVLGEGTTVSVVLPISQD-QPIPRDAIKS 856 >gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1054 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 12/274 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + +++A+ N AKS FLA+MSHE+RTP+NA++GFS+++ + Sbjct: 762 RDITEHKQAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGFSDILASKV---- 817 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ K Y+ I +G+ LL LIN+ILDLS+IEAGR ++ ++L I E + L+ Sbjct: 818 TDKKQKTYLDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLK 877 Query: 343 AQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGR 399 EKN+E + D +L V DE +RQ++LNL+ NA+KFT G + + G T Sbjct: 878 MAEKNLEFILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDS-GYIKLCANKGSTEND 936 Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++++D+G GI + + SF Q G GLGL I + ++ G Sbjct: 937 HSQVDLILAVEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGH 996 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S +G L +V +P ++T Sbjct: 997 ITVESHPGKGSRFEIALHEVKVAVALPAVVQDNT 1030 >gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 848 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 162/343 (47%), Gaps = 10/343 (2%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 Y + LIA + +L+ + + + V +A+ + ++ + + + Sbjct: 515 YDTVMALIAAQVESLARELSISTLIMIALVVGIAVWMASFLTRRITAVVGGIHRFSEQET 574 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + N ++ S + + + + DE RKRAEE + KS FLA+MSHE Sbjct: 575 EYRLP---VQGNDEMASLAISFNQMADRVAESFVRLDEARKRAEEASRMKSEFLANMSHE 631 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN I+GFSE+I E ++ +E I +S +HLL L+N ILD+++IEAG Sbjct: 632 LRTPLNGIIGFSELIRDEA----ADDETRENADIIEKSSRHLLELVNSILDIAKIEAGAM 687 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 LS + L +V E + Q AQ K I + ++ ++ AD +RQ++ NLLSN Sbjct: 688 TLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRVAGDCPATIQADPLRLRQILHNLLSN 747 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT G V ++V + D G GI E + + F Q + + G Sbjct: 748 AVKFTET-GEVALSVDLQPDH-LVFKVSDTGAGIPEAMLHAIFEKFRQVDSFLTRSHSGT 805 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +A+ ++ GG + S + +G LP + Sbjct: 806 GLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLPLHQTETPS 848 >gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 967 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 162/383 (42%), Gaps = 26/383 (6%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 +L A + + LV+ L Y I + + + + + P Sbjct: 150 ILRPVFAQNVLVGAIHLVDDMQQVRNRLHTYYIVVAFIVVITLMVVLLLSNKSQKIFTRP 209 Query: 170 VVVALSTQAIMSMHVLDIS---------LAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 ++ + + +++ ++ I + + Sbjct: 210 LLELMQSIREVTIKKNYDVRVKKQGRDEFGTLIDCFNDMIGEIHARDEDLKMYSADLEKR 269 Query: 221 KDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 A+L AK + + ++ AEE + AKS+FLA+MSHE+RTP+N +LG +E+ Sbjct: 270 VKLRTADLSQAKKALEAMVVTLEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAEL 329 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + E + + I SG LL +IN+ILD S+IEAG+ EL +L ++ Sbjct: 330 LMETDL----TEEQRRFSKTIQSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILID 385 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + ML RA K +E+ I P + D RQV+ NL+ NA+KFT G V V Sbjct: 386 DVMQMLASRAHAKQLELAVLIPPETCIFLRGDPTRFRQVLTNLVGNAIKFTKQ-GEVVVQ 444 Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V T ++ I+D G GI++ ++ + + F Q + G GLGL I++ I Sbjct: 445 VATTVSDQNRVKLHVLIRDTGIGISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEI 504 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 +A GG S+ +G Sbjct: 505 VALMGGDLHCESEPGKGSTFSFT 527 >gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1062 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 26/380 (6%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLS 166 LL + W +++++ + L I A LL ++ L V Sbjct: 266 VLLNYLRMDPMGWQVISVLPQASLMAPMLRIGGVGLAVLLACFAVITLVAMRYSRRVVAP 325 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + Q I + + +++ D + Sbjct: 326 IRAISE--GFQNIQQDRLEQVRPLP------------PSRTQDEIKEMVGWFNAFLDNLH 371 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ++ + ++ AEE N AK FLA+MSHE+RTP+NAI+G +++ + + E Sbjct: 372 GRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQL----ALDAGSPEE 427 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +++I RS Q LL +IN+ILD S+I+AGR E+ +SL +++ + AQ+K Sbjct: 428 KRDFIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQDK 487 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQ 401 IE+ +D SL + + D +RQ++ NL+SNA+KFT G V V V + G Sbjct: 488 GIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPA-GEVVVRVEKVAELASGVAC 546 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S++D G GIA ++P + SF Q ++ G GLGL I++ ++ GG+ + S+ Sbjct: 547 RFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDSQ 606 Query: 462 LREGVEVIAILPNTRVLNFI 481 +G L R+L Sbjct: 607 PGQGSCFWFELTLARLLEES 626 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I ++ + + +++AE AK FLA+MSHE+RTP+N I+ SE++ E + Sbjct: 494 RDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDI--- 550 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ K Y+ I S LL +IN+ILD+S+IEAG+ +L + D++ + + M R Sbjct: 551 -SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHR 609 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 +K IE+ IDP + + DE + Q+++NL+SNAVKFT GG + V V R Sbjct: 610 TSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKELENRSA 669 Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 IKD G GIA I + F Q + G GLGL I + ++ GG Sbjct: 670 ESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGG 729 Query: 455 QFLIRSKLREGVEVIAI 471 + + S+ +G Sbjct: 730 EIRVESEPEKGSTFSFT 746 >gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] Length = 945 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 10/277 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 I + + + + I E +A+ + +++AE N AKSRFLA+MSH Sbjct: 273 RLLKIKSRPQRDDKGNIQYLICTANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSH 332 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N I GF E+++ + KE+I + + + LL++IN+ILD S+IEA + Sbjct: 333 EIRTPMNGIFGFLELLQATNLSL----EQKEFIREAKSASEILLHIINDILDFSKIEAKK 388 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 + + +L + + + + +L +A EKN+E++ I+P++ V D +RQV+ NL+S Sbjct: 389 LTMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLIS 448 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT+ G + V V + +KD G GI + I T+ SF Q + Sbjct: 449 NAVKFTSK-GEISVKVDCLKEENKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTR 507 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I+ ++ GG+ + S + EG Sbjct: 508 KYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKF 544 >gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1376 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 18/298 (6%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 I + + + + EK + ELE E + A+ N AKS FLA+MSH Sbjct: 835 LIEAIAQQVGIALAQAQLLEQEKLHKL-ELEHKNQALKEATRHAQAANRAKSEFLANMSH 893 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAILGF ++++ + ++Y+ I SG+ LL+LIN+ILDLS+IEAG+ Sbjct: 894 EIRTPMNAILGFCDLLQSLV----SEPRQQQYVKSIAASGKTLLSLINDILDLSKIEAGK 949 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL + I L ++ E + +A EK +E+ ++I+ +L + DE +RQ++LN++ Sbjct: 950 MELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDNLPKAIMFDEVRLRQILLNMVG 1009 Query: 378 NAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQ 426 NA+KFT G V ++V S I+I D G GIA + + SF Q Sbjct: 1010 NALKFTDE-GWVKISVVTNSNTPLNAENPESTISLEIAIADTGIGIAPEQQQRIFDSFIQ 1068 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G GLGL I + + GG + S+L +G + I PN +++ P+D Sbjct: 1069 SEGQSTRKYGGSGLGLAITKRLTQMLGGTISLESQLGKGSQFTLIFPNVTPIDWQPDD 1126 >gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 630 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 172/305 (56%), Gaps = 5/305 (1%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + +S + + + ++ + + L + + Sbjct: 317 LQIGEYWTGEGTLVSFGTDITMQKQTQHRVLEREQQMRARVDGFEQSRRQLEIQARQLRE 376 Query: 234 LSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 L++ E + RAE N AKS FLA++SHELRTPLNAI+GFSE++ +GP+ N Y+ Y Sbjct: 377 LAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYESY 436 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + DIH SG++LL +IN+ILD+S+IEAGR+ LS ++ D+ +EC+ ++ A E N+E+ Sbjct: 437 VKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNVEL 496 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 Q + S+ S++ D + ++QV++NLLSNAVKFT G+V + I+I D G Sbjct: 497 SQSGNTSI-SLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYR-GSIRIAIADTGV 554 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + ++ + F Q S + +G GLGL I++S++ HGG+ I+S++ EG V Sbjct: 555 GIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVTC 614 Query: 471 ILPNT 475 ILP Sbjct: 615 ILPVQ 619 >gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis] Length = 967 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 12/290 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + + ++L I E ++ ++ R+ A N AKS FLASMSHE+RT Sbjct: 281 LAMRVEERTAELLKSNNLLKQEIDERHRIEAELEKAREAAVAANNAKSEFLASMSHEIRT 340 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G S+++ T+ P EY+ +G++LL +IN+ILDLS++EAG+ + Sbjct: 341 PMNAIIGMSDLLWETTLTP----KQSEYVKVFRNAGENLLQIINDILDLSKVEAGQITIE 396 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 +L + + + ++ RA EK +E+ + + + D + Q++ NL+ NA+K Sbjct: 397 HIEFNLREQIEKTCEVMAFRAHEKGLELNCHLAEDIPTSFIGDPVRLHQILTNLIGNAIK 456 Query: 382 FTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + +T + D G G+ E + + F Q + G Sbjct: 457 FTRT-GEILLTGKRNKLPGKKGMLLFLVSDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGG 515 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 GLGL I + ++ G+ + S +G T ++ P++ E Sbjct: 516 TGLGLAICKRLVELMDGEIWVESTPGKGSTFYFT--VTFDVHPKPQEQKE 563 >gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 806 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 139/263 (52%), Gaps = 9/263 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + ++ I + AK L +E ++AE N AK+ FL+ MSH++RTP+NAI+G +++ Sbjct: 381 EDRRIQEAAIEKERQAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQLAR 440 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + K+Y+ I + HLL+LINE+LD+S+IE+G +L E+ +L ++ + Sbjct: 441 ---LHTGEEKRLKDYLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLLEDV 497 Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + M+++ +K + I+ L V DE+ ++Q+++N+L NA K+T GR+ + + Sbjct: 498 VEMVRISLDQKCQSLSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISIRLN 557 Query: 395 WTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + I+D G G+ I + F + + S G GLG+ I ++++ Sbjct: 558 ELNKMTQTMGTYCFIIEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVKNLV 617 Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472 + GG I S+ G + L Sbjct: 618 SMMGGDIQIESEYGNGTRFLITL 640 >gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] Length = 574 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 155/325 (47%), Gaps = 11/325 (3%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 ++ + +VA T ++ V+ ++ S F + + +L+ Sbjct: 249 VIMSMLVSVAIAAIVAWRTSRAIAEPVIIVTQVAEQVARKSNFDLRAPVTTEDEIGLLA- 307 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + LI + ++ ++ AE + AKS FLA++SHELRTPLNA++G S++++ + Sbjct: 308 -KSLNRLIERVSERTKELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDD 366 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + I+ +G+HLL LIN+ILDLS+IEAG+ L + ++ ++ Sbjct: 367 ATDLDLTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVL 426 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ + N + D L +++AD+ MRQV+LNLLSN+ KFT G+V +TV Sbjct: 427 TVKSAIDKNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFT-TNGKVTLTVKREK 485 Query: 398 G--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 S+ D G G++E + + F QG + G GLGL I++ Sbjct: 486 TDLPPEAAFDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFC 545 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 GG+ ++S+ G LP Sbjct: 546 QMMGGEVFVKSQPGVGSTFTVHLPL 570 >gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 935 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 26/318 (8%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + + + F Y L + + + + EL AK ++ + AE +L Sbjct: 524 IVLIAIVVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAREAEAASLT 583 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+NA++G+S+++ + + Y+ I + LL LIN+I Sbjct: 584 KSEFLANMSHEIRTPMNAVIGYSDLLSNTV----KDPQQRNYLDAIRAGSRSLLMLINDI 639 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LDLSRIEAG+ L SA+S+ ++ + + LRA E+ I + +D + + + DE Sbjct: 640 LDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEVSVDSKMPAAMMLDETR 699 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------------------GQYISIKD 407 +RQV+ NL+ NA+KFT GG V V T + +++ D Sbjct: 700 LRQVLFNLVGNAIKFTHEGG-VTVRATATPRKSSEKQPVEETASEVDRRCFYRLVVTVSD 758 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + +F Q G GLGL I++ ++ GG+ + S+ G Sbjct: 759 TGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMMGGELQVESEPGAGST 818 Query: 468 VIAILPNTRVLNFIPEDN 485 LP E++ Sbjct: 819 FTVKLPRVEATGAQAEED 836 >gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 822 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 12/330 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC--QAEKDDLI 225 VV+ + + + L ++ ++ + + ++ + ++ L + E + Sbjct: 236 AAVVLFVGLMMLFWGYRLSGAMQEHISRLEALVKTMPHNGEEVDLAQLRFDSRKEIQKVY 295 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 LE + +D+ R+ A + AK FLA+MSHE+RTPLN I+GF +++E + NE Sbjct: 296 QLLESSLEKADKERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPL----NE 351 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E+I + S Q+LLN++N+ILD S+IEAG+ EL E ID + +A Sbjct: 352 EQREFIRVVQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALH 411 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400 K I+ +DP+L + D + QV++NL++NA+KFT GG V V Sbjct: 412 KGIDFAVYVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVF 471 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA + + F Q G GLGL I+ ++A GG+ + S Sbjct: 472 VKFVVSDTGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVES 531 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + +G LP + PE S Q Sbjct: 532 EPGKGSSFFFTLPLKKD-PEAPERRRPSFQ 560 >gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 782 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 30/455 (6%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90 + + V R + L++ +W TL + L+ Sbjct: 179 LLIFVSIRDRSYLLYVLYLGTFTLNLFTREGLSYQWLWPQATLWNHYSLPILNLLTLAFS 238 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV---EPGTWTPEYLTIYKSATLLI 147 +++ + LV ++ + LTL+ + + + + + Sbjct: 239 ILFTCQFLELKKRAPAINRWLVATASVLALFAPLTLINFHFFIQASTAVILPWPLIAIAL 298 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALS-----TQAIMSMHVL-DISLAGMLATALSFFT 201 ++ + Y + + ++ Q I +L +I G AL Sbjct: 299 SIWLIRQGYSPARYFLLAFTAVALATMAYILKTFQLIDGGWILENIMQLGTFTEALLLSF 358 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + Q E + EV + E A+S FLA MSHE+R Sbjct: 359 ALAHRMTVLKSENARIQREAN------EVLEQRVTERTGELNAALSARSEFLAVMSHEIR 412 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+G ++++ G ++ + + I +SG LLNLIN+ILD SRIEAG+ + Sbjct: 413 TPLNGIIGTVDMLK----GTPLDDEQRHNLNVIEQSGNSLLNLINDILDYSRIEAGKMPI 468 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAV 380 +++ +L +++ E + + Q +A + + +I P + D +RQ+++NL+SNAV Sbjct: 469 EQTSFNLFNLINESLALFQHKAHVHSNTLTLEIAPHVGERCLGDPVRLRQILVNLISNAV 528 Query: 381 KFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 KFT G + V V + + D+G GI+E + + F QG + G Sbjct: 529 KFT-DNGTITVRVQRDPDNADYAFFEVHDSGIGISEEQQRRLFDHFQQGDSSTSRRYGGT 587 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + ++ GG+ + S+ ++G LP Sbjct: 588 GLGLAICRQLVEIMGGEIGVDSQPKQGSRFWFRLP 622 >gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 759 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 161/315 (51%), Gaps = 10/315 (3%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ ++G +A + + + + +D +E + + +E RK A Sbjct: 174 QIIHQRMSGAIAGLSGLQARLPWFASREFRALNFSVGVLEDTFSERDEREYALEEARKAA 233 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHE+RTP+N ++G +E+I + +E Y I +SG LL Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DEDQTMYAETISKSGSALL 289 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN+IL+ S+IEAG+ EL + +L + + + +L +A EKN+E+ + DPSL + Sbjct: 290 TIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECY 349 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIP 418 D +RQ++ N+ NAVKFT G V++ V + + IS+ D G GI E + Sbjct: 350 EGDVGRIRQILTNVAGNAVKFTGK-GYVYIEVSGETDDDRTALRISVTDTGAGIPEDRLD 408 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q A +G GLGL I+ ++ GG+ ++S+L +G LP R+ Sbjct: 409 RIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFAIDLPL-RIR 467 Query: 479 NFIPEDNHESTQYKC 493 P+ ++ +K Sbjct: 468 PSQPKRAQDARDFKG 482 >gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 715 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 100/254 (39%), Positives = 141/254 (55%), Gaps = 3/254 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + E + A+ L E ++ AE N KS FLA+MSHELRTPLN+I+GFS+++ + Sbjct: 459 QTCRDVTERKEAERLLHE-KQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVY 517 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L NE +G+I RSG+HLLNLIN+ILDLS++EAG+ EL L + +L Sbjct: 518 GEL-NEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLL 576 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A KNIEI ++D L+ + ADE Q++ NL+ NA+KF+ G V V G Sbjct: 577 SPIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAER-KGD 635 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++KD G GI E + + F Q QG GLGL + + I+ HGG+ Sbjct: 636 LVEITVKDKGIGIKEEDQCKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFN 695 Query: 460 SKLREGVEVIAILP 473 SK+ EG +P Sbjct: 696 SKIGEGSTFAFTVP 709 >gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 975 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 150/255 (58%), Gaps = 1/255 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + E R AE N AK+ FLA++SHELRTPLNAI+GFSE+++ E GPL Sbjct: 706 ITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAIIGFSELMKHEIFGPLQP 765 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ Y+ D+H SG HLL LIN+ILD+S+ EAG +L ES + + +VR + M+ RA Sbjct: 766 PAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLRMMDKRAS 825 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 I + + L+ + ADE+ +RQ++LNLLSNAVKFT GG V VT GRG I Sbjct: 826 ANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTA-QVDGRGMVIE 884 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+ ++ V+ F Q + +G GLGLP+ ++++ HGG + S Sbjct: 885 VIDTGIGMTPEDMDKVMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTMELHSIPDH 944 Query: 465 GVEVIAILPNTRVLN 479 G V P RV++ Sbjct: 945 GTTVTVTFPPERVID 959 >gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel] gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel] Length = 477 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 152/256 (59%), Gaps = 1/256 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++++ E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+I+ E+ Sbjct: 212 YRNTRMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSES 271 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +GP+ N YKEYI DIH SG HLL+LIN+ILD S+ EA + + L IV C M Sbjct: 272 LGPIENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNM 331 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397 + RA++ + + + + + AD K ++QVI+NLLSN++KFT G V + V + Sbjct: 332 MIPRAEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLE 391 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + I I D G GIA+ ++ V++ FGQ +G GLGLP+++ ++ G F Sbjct: 392 DKLIIIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFK 451 Query: 458 IRSKLREGVEVIAILP 473 I+S+ G + P Sbjct: 452 IKSEPNSGTVITLTFP 467 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + ++ T + AEE N AKS FLA+MSHE+RTP+N I+G + ++ T+ Sbjct: 604 HEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLEN- 662 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +Y+ I S + LL +IN+ILD S+IE+G+ E+ L D + E I L ++ Sbjct: 663 ---EQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQ 719 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397 A EK +++ + S+ D +RQVI+NL+ NAVKFTA GG V V V Sbjct: 720 ATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGG-VVVRVDPFHIKDD 778 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D G GI I + SF Q + G GLGL I+++++ GG Sbjct: 779 DVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMW 838 Query: 458 IRSKLREGVEVIAI 471 + S+ EG Sbjct: 839 VESEDGEGSTFHFT 852 >gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1322 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 153/285 (53%), Gaps = 29/285 (10%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +L A+++ ++ R AE N AKS FLA+MSHELRTPLNAI+GF++V+ + Sbjct: 822 ELFAQIQQQSLELEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVMSRDI---S 878 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ ++ ++ I+RSGQHLL LIN++L++S+IEAGR +L+ S+ L ++ +L+L+ Sbjct: 879 LNQEHQSHLDIINRSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLK 938 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A K + + + + +DE +RQV+LNLL NA+KFT G+V + V + + Sbjct: 939 ADFKELTLIFDCAQDVPQYITSDEVKLRQVLLNLLGNAIKFTQK-GKVTLRVRKINNKDY 997 Query: 401 -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++D G GIA +I + T F Q A +G GLGL I+Q + Sbjct: 998 GDPISTSLLFEVEDTGTGIAPEDIKQLFTPFVQARN--TDAHEGTGLGLTISQKFVKLMQ 1055 Query: 454 GQFLIRSKLREGVEVIA--------------ILPNTRVLNFIPED 484 G+ + S + +G LP RV++ P++ Sbjct: 1056 GEITVESVVGQGSTFRFNIQVDGAENVNIPNQLPKNRVIHIAPDE 1100 >gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1313 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 13/285 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + + EK + E + ++ R RAE+ N AKS FLA MSHE+RTPLNAI+ Sbjct: 786 THFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANRAKSEFLAGMSHEIRTPLNAII 845 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G S+++ + + Y+ +H +G+ L LIN+ILDLS+IEAG +L SL Sbjct: 846 GMSDLLAETRL----DGEQSGYLSVVHSAGETLQGLINDILDLSKIEAGMLQLDSVPFSL 901 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 D +R+ + ++A K + + ++ + D +RQV++NL+ NAVKFT GG Sbjct: 902 RDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLRQVLINLVGNAVKFTDSGG 961 Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V S+ D G GIA ++ T+ SF Q + G GLGL Sbjct: 962 SVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFESFSQADSSTTRRYGGTGLGLA 1021 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT---RVLNFIPEDN 485 I++ + GG+ + S + +G +P R +P++ Sbjct: 1022 ISRHLAGMMGGEIGVESTVGKGSCFRFTVPFAISRRTEEPLPKEQ 1066 >gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 759 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 159/315 (50%), Gaps = 10/315 (3%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ ++ +A + + + + +D +E + + +E RK A Sbjct: 174 QIIHQRMSDAIAGLSGLQARLPWFASREFRALNFSVGVLEDTFSERDEREYALEEARKAA 233 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHE+RTP+N ++G +E+I + +E Y I +SG LL Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DEDQTMYAETISKSGSALL 289 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN+IL+ S+IEAG+ EL + +L + + + +L +A EKN+E+ + DPSL + Sbjct: 290 TIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECY 349 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIP 418 D +RQ++ N+ NAVKFT G V++ V + + IS+ D G GI + + Sbjct: 350 EGDVGRIRQILTNVAGNAVKFTGK-GYVYIEVSGETDDDRTALRISVTDTGAGIPDDRLD 408 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q A +G GLGL I+ ++ GG+ ++S+L +G LP R+ Sbjct: 409 RIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFTIDLPL-RIR 467 Query: 479 NFIPEDNHESTQYKC 493 P+ + +K Sbjct: 468 PNQPKRTQDVRDFKG 482 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ ++ +T + K FLA+MSHELRTPLNAILG +E ++ E G L Sbjct: 1372 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 1431 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K+ + I RS HLL LIN+ILDL++IEAG +L + S+ + + I ++ + Sbjct: 1432 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 1490 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396 A +K I I +I +L ++ DE+ +RQV++NLL+NAVKFT G++ + V + Sbjct: 1491 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 1550 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G GI E ++ + F Q A+ +G GLGL + + I+ HGG Sbjct: 1551 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 1610 Query: 457 LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491 + SK+ G + I +P +L P + ++ + Sbjct: 1611 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 1647 >gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1946 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 24/292 (8%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + + EK E ++ ++ AE N AKS FLA+MSH Sbjct: 1207 LLEAVADQVGIALAQAQLLEQEKHQRQQLAEQ-NVAMEKAKQIAEAANRAKSDFLATMSH 1265 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NA++G + ++ + E+ I SG+ LL +IN+ILD S+IE+G+ Sbjct: 1266 EIRTPMNAVIGMTGLLLDTQLSH----EQAEFAETIRNSGEALLTIINDILDFSKIESGK 1321 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL E +L + E + +L +A EK IE+ DP ++ D +RQ+++NLLS Sbjct: 1322 LELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLS 1381 Query: 378 NAVKFTAIGGRVHVTVG-----------------WTSGRGQYISIKDNGPGIAEGEIPTV 420 NA+KFT G V V+V ++KD G GI + + Sbjct: 1382 NALKFTHQ-GEVTVSVSSKRVSPQSLEQLSHRTNKEQQYEILFAVKDTGIGIPPDRLDRL 1440 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I++ + GG+ + S++ +G + Sbjct: 1441 FKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIFYFTI 1492 >gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 708 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 141/311 (45%), Gaps = 17/311 (5%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------------ 224 A+ D + F + L E + Sbjct: 391 WALEERTFADSLANLVALAIEGFERQRAQQALSKAKQELELTVENRTVQLKSANKLLRFE 450 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 IAE + A+ E +AE + AKS FLA+MSHELRTPLNAI+G+SE++E Sbjct: 451 IAERKRAEVALQEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLEELASDEGLE 510 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I I +G+HLL LIN+ILDLS+IEAG+ EL + L D+V + I L A Sbjct: 511 DLLPD-IQKIRSAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAH 569 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 + + ++ L V+ D +RQ++ NLLSNA+KFT G V ++ + Sbjct: 570 KNSNKLEVSCCSDLGVVFTDLTKVRQILFNLLSNALKFT-ENGTVRLSATREMGSNSDWV 628 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y+ + D G G++ + + F QG + G GLGL I++ GG + S+ Sbjct: 629 YLCVADTGIGMSVEQQQCLFEVFNQGDASTTRKYGGTGLGLAISRRFCQMMGGDITVESE 688 Query: 462 LREGVEVIAIL 472 L G L Sbjct: 689 LGVGSTFTVHL 699 >gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 809 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 16/343 (4%) Query: 153 ALSNFMLPYAVFLSF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + + V A + L + + + F+ + + Sbjct: 335 FMFAYGVERIVLRPLNKLHNSADALARGEYDVDLPPAGSDEVGGLTRAFSGMARKIKSHT 394 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ E+ ELE S + R +AE N AKS FLA+MSHE+RTPLN I G Sbjct: 395 RELEDRVRER---TGELEEKSSQLEAARDKAETANRAKSEFLANMSHEIRTPLNGITGMM 451 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++++ + KEY+ S L L+++ILDLSR+EAGR + E ++ ++ Sbjct: 452 QLLQTTRLDS----NQKEYVDLALSSASRLTRLLSDILDLSRVEAGRMVILEEEFNVQEL 507 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 R + +++A EK IE+ +DPSL + DE ++Q++ NL+ N++KFT GRV Sbjct: 508 CRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGDETRLQQILFNLVGNSLKFTRE-GRVR 566 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + I++ D G GIA ++ + F Q + +G GLGL I Sbjct: 567 INWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLFQPFVQEDGSSTRRHEGAGLGLSIVS 626 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 ++ G + S EG LP + PE + + Sbjct: 627 RLVDLMHGTISVDSAPGEGTAFYIFLPLK--VPAAPEADQDDA 667 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 9/277 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ ++ +T + K FLA+MSHELRTPLNAILG +E ++ E G L Sbjct: 1372 RDISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTL 1431 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K+ + I RS HLL LIN+ILDL++IEAG +L + S+ + + I ++ + Sbjct: 1432 GD-RQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQ 1490 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------T 396 A +K I I +I +L ++ DE+ +RQV++NLL+NAVKFT G++ + V + Sbjct: 1491 AFKKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDS 1550 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G GI E ++ + F Q A+ +G GLGL + + I+ HGG Sbjct: 1551 DKSRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTV 1610 Query: 457 LIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491 + SK+ G + I +P +L P + ++ + Sbjct: 1611 NVISKVGSGSQFIFEIPCDDILIGTNTPHLSSNTSDF 1647 >gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] Length = 816 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 185/463 (39%), Gaps = 32/463 (6%) Query: 35 REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94 + + L ++ VL + ++ + + + L+L + Sbjct: 185 ARMDRDYSVYLGVFFGLMSGLVLYN-LFLFFGVRDRSYLYYVCFVVFCTLLQLALMGALD 243 Query: 95 NSDIKIGEVYVWR-IWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATL--- 145 + + + + + L T L ++ Sbjct: 244 KYTPSAVLLNRINGNLSSSLTVMFAILFAMRILNANNFPSWVQRTANGLAVFFFLCAIGS 303 Query: 146 ---------LIALSISALSNFMLPYAVFLSFFPVVV---ALSTQAIMSMHVLDISLAGML 193 ++ LS S +S + AV+ L + ++ V + M Sbjct: 304 VLNLKNIHIVLTLSGSVVSTLVCVLAVYNISKKHFGNYYFLIAMVVWTLGVGVSTFLYMG 363 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + FT T + + L + + R+ A+ E+ AKS+FL Sbjct: 364 LVPYTDFTVWTLPIVSVVLATLLSFTLAAQINDLRKQQVQSLLAARE-AQTESRAKSQFL 422 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A MSHE+RTP+N ++G ++++ + K+Y+ I SG+ LL +IN+ILD S+ Sbjct: 423 AQMSHEIRTPMNGVIGMADLLRQTKLDV----QQKQYLDIIVNSGRTLLTIINDILDFSK 478 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVI 372 I AG+ +L I IVRECI + L A+EK I + + + + ++ D +RQV+ Sbjct: 479 IAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLKKDWKEGASPIIYGDSTRLRQVL 538 Query: 373 LNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNA+KFT GG + + V S + ++D G GI+ + ++F Q Sbjct: 539 TNLLSNALKFTEKGG-ITLRVKPCLRDSEPYLQVEVEDTGIGISVENQQRLFSAFSQAEA 597 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I++ ++ GG+ +RS+ G L Sbjct: 598 STTRRFGGTGLGLAISKQLVELMGGEIGVRSEEGVGSIFWFTL 640 >gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 146/276 (52%), Gaps = 12/276 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + LE A ++E ++A+ N+AKS FLA+MSHE+RTP+ Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + Y+ I SG+ LL LIN+ILD S+IEAGR EL Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYR 237 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383 S ++V+E +++LQ +A +N+ + +I P + ++ D +RQV+LNL+ NA+KFT Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFT 297 Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 +GG V + + Y ++KD+G GI +I + F Q + G Sbjct: 298 EVGG-VAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + ++ GG+ + S++ +G +P Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392 >gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 484 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 21/302 (6%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 LA+A + + L +S +++ E D+ AELE + ++ E + +AEE + AKS F Sbjct: 175 LASATEEMSALNEQLEESMMELDLKNQELLDMNAELEKQQIIAHEAKIQAEEASRAKSDF 234 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN++LGFSE++ E G N EY+ +I SG+HLLNLIN+ILDLS Sbjct: 235 LANMSHELRTPLNSVLGFSELLTDELFG-HLNAKQHEYVKNILFSGRHLLNLINDILDLS 293 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQV 371 ++EAG+ L S + +++ + +LQ +A + ++ + ++ + ADE+ ++Q+ Sbjct: 294 KVEAGKSVLEPSMVKFREVIAGTLTLLQEKALKHDVHLGLELPVDCDIELMADERKLKQI 353 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGW-------------------TSGRGQYISIKDNGPGI 412 + NLLSNAVKFT GG + VT + I+++D+G GI Sbjct: 354 MFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAGKYQPGERQPEAEDFVEITVEDSGIGI 413 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +IP + F Q +G GLGL + + ++ HGGQ + S++ +G + Sbjct: 414 KREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTKRLVELHGGQVGVESEIGQGSRFYFAI 473 Query: 473 PN 474 P Sbjct: 474 PL 475 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 8/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +++A+ E + AE N AKS FLA+MSHE+RTPLNAI+G +E++ + Sbjct: 403 RDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKV- 461 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ + SG+ LL +IN+ILD S+IEAGR + E L D + + + L R Sbjct: 462 ---AQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNR 518 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398 A K +E+ + P + V D +RQVI+NLL NA+KFT G V V Sbjct: 519 AHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQ 578 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++D G GIA+ + ++ +F Q + G GLGL I+ ++ G+ + Sbjct: 579 VTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWV 638 Query: 459 RSKLREGVEVIAIL 472 S++ +G L Sbjct: 639 ESEVGQGSTFHFTL 652 >gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 1452 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 8/255 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + K E ++ AE N +KS FLA+MSHE+RTP+NAI+GFSE++ + Sbjct: 848 QREITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLESDL-- 905 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I+ S + LL++IN+ILD S+IEA R E+ +L I+ + ++ + Sbjct: 906 --DEKQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQ 963 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 A +K +E + ++ + V ADE + QV++NLL NA+KFT G +V + + + Sbjct: 964 TALDKGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEK 1023 Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S+ D+G GI++ +I + F Q +I G GLGL I+ +++ GG+ Sbjct: 1024 SATLLFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEID 1083 Query: 458 IRSKLREGVEVIAIL 472 ++SK G + Sbjct: 1084 VKSKEGVGSTFSFEI 1098 >gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1342 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 8/242 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R+ A E KS+FLA+MSHE+RTP+N +LG ++ + ++Y Sbjct: 651 ELVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQLTS----RQRDYAQT 706 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I RS HLL +IN+ILD S++EAG EL L + + +L +A+ KN+E+ Sbjct: 707 IRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATL 766 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409 +D + + D +RQV+LNL +NA+KFT G V + + + ++ D G Sbjct: 767 VDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTG 826 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI+ + SF Q + G GLGL I + ++ GG+ + S++ +G Sbjct: 827 VGISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGSTFW 886 Query: 470 AI 471 Sbjct: 887 FT 888 >gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] Length = 1191 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 24/291 (8%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEE----------NLAKSRFLASMSHELRTPLNAIL 268 E+ L +++ + ++ E+ N AKS FLA+MSHE+RTP+N+I Sbjct: 775 TERTHAEDSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSIC 834 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFS+++ + N + +I + + LL LIN+ILD S+IEA + L+ +L Sbjct: 835 GFSDLLLRSQL----NPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNL 890 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 +++E +A+ K +++ +I+P + + D+ ++QV+ NL+SNA+KFT G Sbjct: 891 ETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTET-G 949 Query: 388 RVHVTVGWTSGRGQ--------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 V + V S++D G GI+ + F Q + G G Sbjct: 950 EVKIAVSQQGETEVNGGIIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTG 1009 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 LGL I + I+ GG+ + S++ G +P + + E + Sbjct: 1010 LGLTICRRIVQLMGGEIHVDSEVDVGSTFWFTVPLQQPDHPASPATSEHPE 1060 >gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 982 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 174/460 (37%), Gaps = 28/460 (6%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFP-MWSLITLAVYAANLSLGKKVMN 95 ++ S + + L + + G + W L+ + Y A Sbjct: 236 MLRRKDRSTLFCALLCLLVAVRSSTTGEIIILDLFPGTGWHLLYVLQYLAFYLAVPVFGQ 295 Query: 96 --SDIKIGEVYVWRIWLLVGQIAIGLCWTLLT-------LVEPGTWTPEYLTIYKSATLL 146 + GE G A+ + + + +Y + L Sbjct: 296 FIHLLYPGETSRKLTRFCWGLAALFSLTVIAAPVKVYSKFILWYELYTIFFLLYIALVAL 355 Query: 147 IALSI--SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + ++ + + + AVFL+ + L ++ + + ++ Sbjct: 356 VRAALKKREGAGYFILGAVFLALAAINDTLVANDVLDGPF--VIDFALFIFLFFQALVLS 413 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAEEENLAKSRFLASMSHEL 260 ++ + E + LE + ++ A+ N AKS FLA MSHE+ Sbjct: 414 MRFSRAFATVEKLSGELEAYSRTLEQKVRERTSDLERAKREADTANRAKSDFLALMSHEI 473 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP++ ++G +E++ + NE +EY I+ S + LL +I++ILD SRIE G+ Sbjct: 474 RTPMHGLIGTAELLMETPL----NEEQREYAAVINESSEMLLAIIDDILDFSRIEEGKLA 529 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNA 379 L E+ + + + +A K + +D ++ V D + QV+LNL+ NA Sbjct: 530 LEEAGFDPRQVEKRVAGLFAPKAGLKGLLFTSAVDAAVPRVLRGDPLRLGQVLLNLVGNA 589 Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 VKFT G V + V G ++D GPGI EG ++ F Q + Sbjct: 590 VKFTER-GEVSLRVFVEKREGDIAKIRFEVRDTGPGIPEGVRSSLFDPFTQADASTTRRF 648 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I + ++ G+ S+ G +P Sbjct: 649 GGTGLGLSICRRLVELMNGEIGFASEEGRGATFWFTIPFK 688 >gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 623 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 6/269 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +K L ++ + A+ N AKS FLA+MSHELRTPL ++G S + Sbjct: 214 QVQQQKQTLERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLL 273 Query: 276 L-----ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 E L E K Y+ IH SG++LL LIN+ILDLS++E+G+ L S SL Sbjct: 274 RLYSQPENFPALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGK 333 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + ++C+ L+ A+EK + ++ K+ AD + +RQ++LNLLSNA+KFT GGRV Sbjct: 334 MAQQCLHTLRDFAKEKGVNLYLKMKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVT 393 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +TV + +KD G GI++ + + F Q + G GLGL + + ++ Sbjct: 394 LTVSR-KDKMAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVE 452 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 HGG S + G + +P +++ Sbjct: 453 LHGGSIQFESVIGLGTKFTVYIPIQPLID 481 >gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 845 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 156/310 (50%), Gaps = 8/310 (2%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQAEKDDL 224 + + + ++ M+ + + + L +S+ ++ A + + Sbjct: 536 TLLMIGLVIAIAVWMAGLLTRRITGMISGIHAFQEGDLKRRLDARSSDEMGELAASFNRM 595 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + D+ R++AEE + KS FLA+MSHELRTPLN ILGF+E+++ E L+N Sbjct: 596 ADSVQDSFKRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE----LDN 651 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +++EY I +SG+HLLNL+NEILDL++IEAG L +V EC+ Q+ A Sbjct: 652 PSHQEYATVIQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTAT 711 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K + + L + D +RQ++ NLLSNAVKFT G++ +TV +G+ Sbjct: 712 AKGLGFDLNVAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQ-GKISLTVRP-AGQEIAF 769 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GI + V F Q + G GLGL + + + + GG+ + S + Sbjct: 770 AVSDTGAGIPPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVG 829 Query: 464 EGVEVIAILP 473 G LP Sbjct: 830 VGSTFTVYLP 839 >gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1613 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 12/292 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + L + + EK L E +K A+ N AKS FLA+MSH Sbjct: 1071 LIEAVAAQLGIAIAHARLLEGEKRRLKQLSEK-NKALGRAKKEADIANKAKSEFLANMSH 1129 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NA+LGFS++++ + KEY+ I SG+ LL LIN+ILDLS+IEAG+ Sbjct: 1130 EIRTPMNAVLGFSDLLQD----IITEPEAKEYLEAISASGKTLLRLINDILDLSKIEAGK 1185 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 L I+L ++ E + + +A EK + + +IDP L V DE +RQ++LN++ Sbjct: 1186 LTLHYEPINLRILIAEIEQIFRHQATEKGLNLKSEIDPKLPCGVELDEVRLRQILLNVVG 1245 Query: 378 NAVKFTAIG-GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA KFT G ++ V IS++D G GI+ + +F Q Sbjct: 1246 NAFKFTDTGQIKITVNCRANPEHSEKIDLKISVEDTGIGISPDNQTKIFNAFTQSEGQSN 1305 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVLNFIPE 483 G GLGL I Q ++ GG ++S+ +G + P V PE Sbjct: 1306 RKYGGTGLGLAITQRLVQMMGGTVHLQSQQGQGSKFTFYFPKVVAVNQLAPE 1357 >gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 404 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 15/325 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + P V + + ++ L + L + + Sbjct: 81 LAMRAAAPEVPIVILTSHDDSDFAFSTIEAGAQDYLVKGVIGSDSLKRVIRHARGRFKLE 140 Query: 222 DDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +L+ A ++E + A+ N+AKS FLA+MSHE+RTP+N ++G + ++ E Sbjct: 141 MELMESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAED 200 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++ + Y I SGQ LL LIN+ILD S+IEAGR EL S ++++E ++ Sbjct: 201 L----SDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVL 256 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 LQ +A +NI + ++ P + +V D +RQV+LNL+ NA+KFT IGG V + + Sbjct: 257 LQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGG-VAMELSPAP 315 Query: 398 GRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + ++KD+G GI ++ + F Q + G GLGL I + +M Sbjct: 316 ADPAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMEL 375 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476 GG+ + S+ +G +P Sbjct: 376 MGGEIGVESEEGKGSTFWFTVPLRP 400 >gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1120 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 89/279 (31%), Positives = 139/279 (49%), Gaps = 6/279 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 V + + E I L+ ++ + ++ AE N AKS FLA+MSH++RTP+NA+LG Sbjct: 698 VDGRTVRLEVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMV 757 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ ++ P Y+ I R+G LL+LIN+ILDLS+IEAG+ +L +L + Sbjct: 758 ELLGESSLDP----EQSHYLKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAET 813 Query: 332 VRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 V + +L+ +A EK +++ P V D + +RQ++LNLL NAVKFT G V Sbjct: 814 VEHVMDILRHKASEKGLQLQTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQ-GSVS 872 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +T+ + D GPGIA + F Q G GLGL I ++ Sbjct: 873 LTLQQQPDGQYSFQVADTGPGIAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVT 932 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G ++S+L G LP + P++ + Sbjct: 933 AMRGTLWLKSQLGHGSIFYFTLPLATAMEPAPDEVSPQS 971 >gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 736 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 10/312 (3%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 P+++ T M+ LDIS + + ++K+ E Sbjct: 201 FISPILLLTKTAKEMAGGNLDISEELAAIDSNDEIGLLASTFKDMSIKLDKSYKELKGFS 260 Query: 226 AELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 LE + +K+AE+ KS FLA+MSHE+RTP+N ILG + + + Sbjct: 261 ENLEQKIQIRTKELEIEKKKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLALETDL-- 318 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N+ + YI I S + LL +IN+ILD S+IEAG+ + ++ ++ +++ I +++L Sbjct: 319 --NDKQRNYIQKIDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVEL 376 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A EKN+++ D ++S + D +RQ+++NLL NAVKFT G V +++ S Sbjct: 377 KADEKNLKLTVNYDKNISKYFYGDSLRLRQILINLLGNAVKFTDS-GEVSISLKKISKDR 435 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G G+++ + + SF Q +I G GLGL I++ ++ GG+ + S Sbjct: 436 FRFEVSDTGIGLSQEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVES 495 Query: 461 KLREGVEVIAIL 472 K G + I + Sbjct: 496 KENIGSKFIFEI 507 >gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B] gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B] Length = 632 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 9/324 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L ++ L + ++ L + + + +S Sbjct: 151 FLLTTEAIKILVLIIGVLWVAFRLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 AEK + + +++ ++ + R RAE N KS FLA+MSHE+RTP+N I+G S ++ Sbjct: 211 VLAEKYNRSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLN 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + KE++ I S L+ +I++ILD S++EAG+ EL ++ L +++ + Sbjct: 271 DTDL----DPQQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++A++KN+++ IDP L V D ++QV+ NLLSNA+KFT G ++ V + Sbjct: 327 ISLHSVKAKQKNLQLLSDIDPHLPMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVAL 386 Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G +I + D+G GIA+ + F Q + G GLGL IA ++ Sbjct: 387 SRLDGETAHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNL 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475 GG+ + S+L G +P Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPVA 470 >gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1407 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 152/319 (47%), Gaps = 12/319 (3%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 +F ++ Q+++++ + + ++ +L AE Sbjct: 807 AFRALLEPQGIQSLITIPLNYGEQCFGFVGFDA--VRSLKIWADDDLSLLRVLAELFTNA 864 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ E R +E N AKS FLA+MSHE+RTP+N ++G + ++ ++ ++ Sbjct: 865 EVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSL----SD 920 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + Y + S LL LIN+ILD S+IEAG++EL L +++ + ++ +RA++ Sbjct: 921 EQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARD 980 Query: 346 KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RG 400 K +E P + + D + QV+ NL NA+KFT G V V+V SG Sbjct: 981 KELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQ-GEVAVSVALVSGSAQEDL 1039 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S++D G GI E +I + +SF Q + G GLGL I++ ++ GG+ + S Sbjct: 1040 LRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISRQLVELMGGEIGVSS 1099 Query: 461 KLREGVEVIAILPNTRVLN 479 + EG E +P + L Sbjct: 1100 RENEGSEFWFTIPFKKQLP 1118 >gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction histidine kinase [uncultured marine group III euryarchaeote SAT1000-53-B3] Length = 752 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 104/460 (22%), Positives = 179/460 (38%), Gaps = 30/460 (6%) Query: 39 TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDI 98 + +P L L+A + + + +++ + + Sbjct: 291 LVFWGVQNATAPAGDLLNGLLAGLVAVTASANWVTPIGAVCIGAGGGLVAMYATRLLERL 350 Query: 99 KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSATLLIALSIS 152 ++ + L G I L E T + + L + Sbjct: 351 ELDDPVGAIPVHLAGGIFGTLVLPFFAAEEHLTGNSNLNNYTDNPRVNQFIAQLTGIIAI 410 Query: 153 ALSNFMLPYAVFLSF--------------FPVVVALSTQAIMSMHVLDISL-----AGML 193 L F + Y +F + + +A + + +L I + Sbjct: 411 GLYTFSVSYILFKTINHYNPLRVSQEAEDIGLNIAEHDSSSDQIDLLKIMQYQNDTGDLS 470 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + ++S E D + + K ++A+ N AKS FL Sbjct: 471 VRGPEDLFTEAGQIGYHYNILMSSLEESDKI---MRKQKDSLKVAMQKAQTANKAKSDFL 527 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHELRTPLNAI+G+SE++ E ETY E + IH SG HLL LIN+ILDLS+ Sbjct: 528 ANMSHELRTPLNAIIGYSEMLIEEADDDGL-ETYSEDLAKIHSSGDHLLTLINDILDLSK 586 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEAG+ +L +++++ + + + K + D+ +RQ++ Sbjct: 587 IEAGKMDLHIEEFDFTNLLKQIEATARPLVDKNKNKFVIKCKTKKLKLKNDQTKVRQILF 646 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 N+LSNA KFT G + + + + D G G++E ++ V F Q + Sbjct: 647 NMLSNAAKFTKK-GTITLQIKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEFTQAESSTSK 705 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGLPI++ + GG+ ++SK +G I+P Sbjct: 706 DYGGTGLGLPISKKMTEMMGGKMEVKSKEGKGTTFSIIIP 745 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 302 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 10/274 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + + R+ AE + K+ FLA+MSHE+RTPLN I G ++++ ++ Sbjct: 409 REDLTAWKKTEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKETSLDM 468 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 KEY+ +S L L+++ILDLSRIEAG + + +++ + + Sbjct: 469 ----EQKEYVDLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAV 524 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWT 396 + K++ + + DE ++Q++ NL+ NA+KFT GG V V+ G Sbjct: 525 TTRNKHLSLECIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGG-VQVSWSLYAGDD 583 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + I+++D G G+ + + + F Q + QG GLGL I + ++ G Sbjct: 584 TEQQVRITVQDTGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNI 643 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 ++S +G LP + +S Sbjct: 644 SVKSVPGQGSTFYVDLPLKAAEDSDVSRQEDSQD 677 >gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1369 Score = 302 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 148/336 (44%), Gaps = 28/336 (8%) Query: 175 STQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + +++ + + A + ++ L + I E + + Sbjct: 557 LLRRLVAREIPGYQMEKRYIHASGRIVWVLLSVSLVTGENDEPLYVIAQVQDITERKRIE 616 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E +++AE + AKS F+A+MSHE+RTP+N ++G +E++ + P +EY Sbjct: 617 EELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTP----EQREYAR 672 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I SG+ LL ++N+ILD S+IEAGR L + V E + +L RA K +E+ Sbjct: 673 TIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELIC 732 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------ 399 I+P + + D +RQV+ NL+ NA+KFT G V V+ + Sbjct: 733 FIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSASLSKEEKKKSAPAGERGG 791 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD+G GI E + + +F Q + G GLGL I++ ++ GG+ Sbjct: 792 EIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIG 851 Query: 458 IRSKLREGVEVIAI----LPNTRVL--NFIPEDNHE 487 ++S +EG LP P + E Sbjct: 852 LKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEGE 887 >gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01] gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01] Length = 632 Score = 302 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 9/324 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L ++ L + ++ L + + + +S Sbjct: 151 FLLTTEAIKILVLIIGVLWVAFRLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 AEK + + +++ ++ + R RAE N KS FLA+MSHE+RTP+N I+G S ++ Sbjct: 211 VLAEKYNRSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLN 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P KE++ I S L+ +I++ILD S++EAG+ EL ++ L +++ + Sbjct: 271 DTDLDP----QQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++A++KN+++ IDP L V D ++QV+ NLLSNA+KFT G ++ V + Sbjct: 327 ISLHSVKAKQKNLQLLSNIDPHLPIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVAL 386 Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G +I + D+G GIA+ + F Q + G GLGL IA ++ Sbjct: 387 SRLDGETAHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNL 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475 GG+ + S+L G +P Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPVA 470 >gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] Length = 998 Score = 302 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 15/304 (4%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-----RKRAEEENLAKSR 251 L +++ + + LS + E +V + D+ ++ AE+ N AKS Sbjct: 451 LGYYSERARVQTRDEIGELSKSFNEMVNAVETDVIRREKDKQTVSVLKEEAEQANKAKSA 510 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY---IGDIHRSGQHLLNLINEI 308 FLA+MSHELRTP+NAI+G+SE++ + ++EY + I+ +G+HLL LIN+I Sbjct: 511 FLANMSHELRTPMNAIIGYSEILTEDATDN----QHQEYIPDLKKINSAGKHLLQLINDI 566 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAG+ EL I+ + +E + + D S+ + D + Sbjct: 567 LDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDESIQGITGDSVKI 626 Query: 369 RQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +Q++ NL+SNA KFT G + + I ++D G GI + + V FGQ Sbjct: 627 KQILFNLISNAAKFT-ENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDKAAKVFEEFGQ 685 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + G GLGL + + GG + S++ +G +P + ++ Sbjct: 686 ADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIPKNISTSESITEDV 745 Query: 487 ESTQ 490 ++ + Sbjct: 746 KNNE 749 >gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 579 Score = 302 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 190/459 (41%), Gaps = 18/459 (3%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 ++ D+ + L V+ ++ L ++ + + W+LI L+ + Sbjct: 2 ARHSVDKYRLALPVDINRSLA-FRALHIMSAGLVFGVNVRWTSAVTWTLIVLS---IEVW 57 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + L + + W + ++ + A L Sbjct: 58 EALDAAKRGKSGAPLRRSGRTLRRIAL--NIVWVTMPVILWLMGDFASRIV-ALAMLTTH 114 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 L+++ +F A P VA + + + LA + A Y+ + Sbjct: 115 LAVALSYSFNTSRAAVAIGLPPAVAFFFLPVALGGLSGLKLAAVAACFGFCLFYLAIIVE 174 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + + +L+ + EV ++ ++ + AKS FLA MSHELRTP+N +L Sbjct: 175 QNRANARILRGAQAELLEQREVLRAQTEAAN----AASQAKSSFLAMMSHELRTPMNGVL 230 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + L + ++ + RSGQ L+ ++N++LD+S+IEAG+ EL L Sbjct: 231 GMAHALTLSKLDSH----QVSHLDMLLRSGQGLMTILNDLLDISKIEAGKLELEIIPFDL 286 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ R+ + + A K + + ++ V D +RQV++NL+SNA+KFT+ G Sbjct: 287 SELGRQVEDLWRDAAHIKGVSLVCEVAFSGPHWVSGDPTRLRQVLINLVSNALKFTSQ-G 345 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V +++ + I++ D GPGI + + +F Q +I G GLGL I + Sbjct: 346 EVRLSIWRSEDGLCQIAVTDTGPGIPVNQQALLFQAFSQADASITRKFGGTGLGLAICKQ 405 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +++ G+ + S+ G LP + E Sbjct: 406 LVSLMDGRIDLDSREGVGSTFTVSLPL-PTAEAVQEAEQ 443 >gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1702 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 16/278 (5%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 +A +++I L+ + ++ AE + AKS F+A+MSHE+RTP+N I+G +++ Sbjct: 1052 LKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLD 1111 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N +EY+ + S LL +IN+ILD S+IEAGR EL +S SL I+ E + Sbjct: 1112 TEL----NAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETL 1167 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 L R+ +K +EI I P + D +RQ++ NL+ NA+KFTA G V +TV Sbjct: 1168 KTLAWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAE-GEVSLTVKL 1226 Query: 396 TS--GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI ++ + +F Q +I G GLGL I+ ++ Sbjct: 1227 EDITNGEVTLAFSVADTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVEL 1286 Query: 452 HGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHE 487 GG+ S +G I P + P +N + Sbjct: 1287 MGGKLKAESIPGKGSRFDFIAKFPLGQ----APTENSK 1320 >gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 916 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 13/363 (3%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIM 180 L L + TL A +++ L P+ ++ + + + Sbjct: 140 GGLYLEITLAPLYWQILWQVIITLTAAAFALLIAHLRLQRLNRSILDPLNDLSTNMEHVT 199 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETR 239 S I T L+ + ++ + + + A+ D L E+ + + Sbjct: 200 SKADYTIRTESSAITELNTLSKGFNNMLEMIQERDAKLADHLDHLEEEVTKRTAELVLAK 259 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + AE + AKS FLA+MSHE+RTP+N ILG +E++ + N + + + SG+ Sbjct: 260 ESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQL----NRDQQRFAETVQSSGR 315 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI--FQKIDPS 357 HLL +IN+ILD S+IE+ EL L+ ++ + + M A +K +E+ Sbjct: 316 HLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNR 375 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 V D +RQ+ NL+SNA+KFT+ G V + G I ++D G GI Sbjct: 376 AFMVRGDSFRLRQIFANLISNAIKFTSQ-GEVVIRTQLCEAAGSRVNLRICVEDTGIGIP 434 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q + G GLGL I + ++ GG I S +G + L Sbjct: 435 PEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLE 494 Query: 474 NTR 476 + Sbjct: 495 LEK 497 >gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 887 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 3/251 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E + + + + AE N A S FLA+MSHELRTPL AI+GFSE++ E G + Sbjct: 313 LSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELMLGEATGEFD- 371 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++++G I SG+HLL+LIN ++DLSRIEAG+ +L SL DI + + A Sbjct: 372 ELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADTKSISSPLAL 431 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +KNI + ++ ++AD +Q++ NL+SNA+KFT GG V V VG S ++ Sbjct: 432 KKNISMDFNVESDFL-IYADRTRFKQIMYNLVSNAIKFTPAGGSVEV-VGRRSENRIRVT 489 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI++ EI + F Q + A+ + GLGL ++++ + HGG+ + S+ + Sbjct: 490 VSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRIWVESEPGK 549 Query: 465 GVEVIAILPNT 475 G +P Sbjct: 550 GSTFTFEVPVE 560 >gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 621 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 3/269 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++++ +L A+ + + E A + E+ K+ F+A+MSHELRTPLN Sbjct: 348 RWDQNDIYMLLVIADSVGAVIKKEKANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLN 407 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS+++ G +N + K Y I + G+HLLNLIN+ILD S+I + + EL+ Sbjct: 408 AIIGFSQLLSSNRYGNMNEKELK-YSFSILKGGKHLLNLINDILDFSKIHSNKMELNIET 466 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 I+L +I E + A +K I + + + D+ Q++ NLLSNAVKFT Sbjct: 467 INLKEICDEIKTFITPLATKKGITVEYNNKFDI-DINLDKLKFIQIMSNLLSNAVKFTPD 525 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V V + + + +S+ D+G GI E ++ + F Q + G GLGL + Sbjct: 526 KGKVSVDIDFVAE-YVQVSVTDSGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALV 584 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + HGG + S+L +G +P Sbjct: 585 KEYVEMHGGTIWVESELGKGSTFTFTIPV 613 >gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1069 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 138/301 (45%), Gaps = 24/301 (7%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + I E + + E +++AE + AKS F+A+MSHE+RTP+N Sbjct: 286 RVGPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMN 345 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G +E++ + P +EY I SG+ LL ++N+ILD S+IEAGR L Sbjct: 346 GVIGMAELLLDTPLTP----EQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIP 401 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 + V E + +L RA K +E+ I+P + + D +RQV+ NL+ NA+KFT Sbjct: 402 FEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTE 461 Query: 385 IGGRVHVTVGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G V V+V + +KD+G GI E + + +F Q + Sbjct: 462 E-GEVVVSVSLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTT 520 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVL--NFIPEDNH 486 G GLGL I++ ++ GG+ ++S +EG LP P + Sbjct: 521 RRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEG 580 Query: 487 E 487 E Sbjct: 581 E 581 >gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1177 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 132/269 (49%), Gaps = 9/269 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AE N +KS FLA+MSHE+RTP+N ++G E++ + Sbjct: 766 RDITQRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLETPL--- 822 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N YI + +G LL LI+ ILDLS+IEAGR L E A L +V +L+ Sbjct: 823 -NAEQTRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQ 881 Query: 343 AQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A N+ + +I P L V D +RQV+ NLL NA+KFT GG V + + + + Sbjct: 882 ALNHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGG-VSLHLSLDANQH 940 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + + D G GIA ++ + +F Q ++ G GLGL I + GG+ + S Sbjct: 941 IHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVES 1000 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489 +G LP VL+ P +T Sbjct: 1001 IEGQGSTFHMTLPL--VLSHTPLHETPTT 1027 >gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 892 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 5/246 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++ AE+ + AKS FLA+MSHE+RTP+N ILG ++++ + + NE KEY+ Sbjct: 514 EQALGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQPL----NEKSKEYL 569 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 S + L +IN+ILD S+IEAG+ L +++ L ++A +KNI + Sbjct: 570 KKSLYSTRALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQATDKNIYLK 629 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 ID D +RQV LNL+SNA+KFT+ GG V VT T I D G G Sbjct: 630 FVIDIEHKHWVGDPVRLRQVFLNLISNAIKFTSQGG-VTVTFRLTDESRICCCISDTGIG 688 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+E I + F Q + G GLGLPI +S++ G+ + S+L G + Sbjct: 689 ISEQAIDRLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSGSQFYVY 748 Query: 472 LPNTRV 477 LP + Sbjct: 749 LPLKQA 754 >gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3] gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A:Hpt [Shewanella piezotolerans WP3] Length = 935 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ F L V P+ + A + LD L G L Sbjct: 184 HRAAVAAFIIVLIGVQLNLFFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRLTGNLI 240 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 241 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRALEAS 300 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I RS +LL++IN Sbjct: 301 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 356 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L SL +++ E + ML A+EK I++ +DP + V D Sbjct: 357 DILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVIDVDPRIPEDVTGDA 416 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 QVI NL+ NAVKFT G ++ + + + ++ I D G GI ++ ++ Sbjct: 417 MRFSQVITNLVGNAVKFTDSGSVQLKMQLEEIADGSVHVRTEIIDTGIGIDADKLASLFQ 476 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S+ ++G LP Sbjct: 477 AFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTFWFSLPL 528 >gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51] gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 560 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 13/364 (3%) Query: 122 TLLTLVEPGTWTPEYLTI-----YKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALS 175 ++L+ P + + + LLI + + ++ + L A Sbjct: 186 GAISLIMPMDIFLHGIKLNVYRHLSFSLLLIGVIVISMYLLVTRLVTRSLGELKGATAQV 245 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAEL-EVA 231 Q + + I G + + L +++ + + + L+ E + Sbjct: 246 GQGDFDIDLNRIKAQGEIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIK 305 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + + E N KS FLA MSHELRTPL +++ F++++ + L E ++ + Sbjct: 306 QDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE--RQNL 363 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + Q+LL LIN ILDL++IEAGR EL + + D++ ++ A++K I Sbjct: 364 KYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWE 423 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGP 410 +DP +S + AD + +R+VI NL+ NA+KFT GRV + V I + D G Sbjct: 424 ISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRVIDTGI 483 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + F Q + G GLGL +A+ ++ H G+ + S+L +G + Sbjct: 484 GIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVV 543 Query: 471 ILPN 474 +LP Sbjct: 544 LLPK 547 >gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 1070 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 7/255 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 D+ A++E A + + R+RAE + AKS+FLA+MSHE+RTPLN +LG ++V+ + + Sbjct: 662 HLDVSADIEQA-AALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQVLHMTEL- 719 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E ++ I SGQ L +LI++ILD+S+IE+G EL + A + ++V + + Sbjct: 720 ---TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVAMVSDITR 776 Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 LRAQEK + + + P ++ V DEK +RQ+++N++ NAVKFT GRV + + + Sbjct: 777 LRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDS-GRVSIDIRAGAED 835 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I D GPGI + ++ F Q +I G GLGL I ++ GG+ + Sbjct: 836 VVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGEIGVE 895 Query: 460 SKLREGVEVIAILPN 474 S EG LP Sbjct: 896 SVPGEGSTFWFKLPL 910 >gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 726 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 144/255 (56%), Gaps = 2/255 (0%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I E + + ++ AE N AKS FLA+MSHELRTPLN+I+GFS+++ + Sbjct: 469 ETGVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVY 528 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G LN + +G+I SG+HLLNLINEILDLS++EAG +EL S L ++ E M+ Sbjct: 529 GELNL-KQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMI 587 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A K ++I +ID +LS V+AD++ + QV+ NL++NAVKF+ G V V Sbjct: 588 FPFATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKA-VQMDG 646 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D+G GIA + + F Q + QG GLGL + + I+ HGG Sbjct: 647 FLKITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFE 706 Query: 460 SKLREGVEVIAILPN 474 S++ +G +P Sbjct: 707 SEVGKGSVFGFSIPL 721 >gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 932 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 24/346 (6%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 T + +I L+I+ L + + P+ + S + L Sbjct: 236 GTAGATVLQIILAFVIILAIAVLIRILFTQVTY----PIRDYILKLKDFSFDDEEFRLVP 291 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 L+ L++S L + + A+ R A++ N AKS Sbjct: 292 KGTVELNMLAENFNELYRSFHNELVRR----------KKAEETMKAARDEADKANRAKSE 341 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLASMSHE+RTP+N+I+G+ +++ + P +EY+ +I + ++LL +IN+ILD Sbjct: 342 FLASMSHEIRTPINSIIGYQYLLKNSVLSP----KQREYVENIGLAAKNLLAIINQILDF 397 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAGR L E ++ D++ E +I++ + A+ K IE+ K+D + + D ++Q Sbjct: 398 SKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQ 457 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 V++NL+SN +KFT G + + V S+ D G GI++ + + +F Q Sbjct: 458 VVMNLVSNGIKFTHE-GYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLFQAFTQ 516 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G + G GLGL I + ++ G+ + S++ +G L Sbjct: 517 GDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562 >gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 397 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 2/264 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ +K AE N AK+ F+ +MSHELRTPLN+++GFS+++ GP+N Sbjct: 127 INGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPMNT 186 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ +I SG++LL +IN +LD+SR+EAG L + + ++ E + L A Sbjct: 187 -KQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRMNLLSPAS 245 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K I + KIDPS+ +V AD +RQ++ NL+SNA+KFT G+V ++ + Sbjct: 246 VKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVISAC-KKEGVLEVK 304 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + DNG GI+E + F Q + G GLGL I ++ + HGG + S++ + Sbjct: 305 VSDNGIGISEDSYEKIFMPFTQADSSAARGYGGAGLGLFIVRNFVDLHGGDISVNSEVGK 364 Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488 G +P + E+ + Sbjct: 365 GSTFTFTIPAKPENTSLQENETKK 388 >gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 773 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 111/272 (40%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E ++RAE N AKS FLA+MSHELRTPL Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ Y+EY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDILDMSKIEAGRFTLDRK 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L I+ E + L +AQEKNI + I P L D + M+Q+ LNL+SNAVKFT Sbjct: 623 NIDLEPIISEAVRTLTPQAQEKNISVSTNIAPEL-HAEVDGRAMKQIFLNLISNAVKFTP 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG ++V + IKD G GI + I + F Q + G GLGL I Sbjct: 682 SGGSINV-CAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVENQLTKTHTGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V +P + Sbjct: 741 SRSLLELHKGKLEIISKEMKGTTVTITMPIKQ 772 >gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 147/276 (53%), Gaps = 12/276 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + LE A ++E ++A+ N+AKS FLA+MSHE+RTP+ Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + Y+ I SG+ LL LIN+ILD S+IEAGR EL Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 S ++V+E +++LQ +A +N+ + +I PSL + V D +RQV+LNL+ NA+KFT Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFT 297 Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 +GG V + + + ++KD+G GI +I + F Q + G Sbjct: 298 EVGG-VAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + ++ GG+ + S++ +G +P Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392 >gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1076 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 136/262 (51%), Gaps = 10/262 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + EL + + ++ AE K +FLA+MSHE+RTP+N I+G +V+ + Sbjct: 542 RDVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETEL--- 598 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +++ +EY+ I S + LL ++N+ILDLS++EAG+ + + L ++++ + + + + Sbjct: 599 -DKSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQK 657 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A E N + + DP + + D + Q++ NL SNA+KFT G V + + W Sbjct: 658 AAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFT-QNGNVIIRIQWEGQDEK 716 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI+E + TSF Q I+ K A G GLGL I++ ++ GG+ Sbjct: 717 TQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIG 776 Query: 458 IRSKLREGVEVIAILPNTRVLN 479 + SKL EG LP + Sbjct: 777 LTSKLGEGSVFWFTLPAGLAVE 798 >gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 565 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 6/294 (2%) Query: 184 VLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + D L + L + + + + +++ + + + K Sbjct: 269 LPDWVKLTGLVAGTVLIMSLGGSLLLKRRVDARTRELRQINNEMDDRIRSRTAELADAMK 328 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +A + KS FLA+MSHELRTPLN+I+GF+ ++ E GPL NE K+ +G + S +H Sbjct: 329 KARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPL-NEEQKKQMGMVQTSARH 387 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL LIN++LD+S+IEAG+ L+ L + + ++ A++ I++ +I + Sbjct: 388 LLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKNEIDLKVEIGKDVGD 447 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D++ + QV+LNLL+NAVKFT G V + T IS+ D G GI ++ + Sbjct: 448 MTTDQRRLEQVVLNLLNNAVKFTET-GSVSINC-RTDTGQYVISVADTGIGIQPEDVAEL 505 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + +G GLGL I++ ++A GG ++S+ +G LP Sbjct: 506 FQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGSTFTVRLPK 559 >gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 931 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 105/462 (22%), Positives = 194/462 (41%), Gaps = 27/462 (5%) Query: 34 DREIITLHVESLFRVSPILPLFVLLV-----ANIGTWFTQNPIFPMWSLITLAVYAANLS 88 + + + V + L +L A + ++ AA Sbjct: 70 EAFHLPVQVNYYLPTVLLSMLAAILASFGALAVVSRATMGTLRALGGAVFMGCGIAAMHY 129 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI---YKSATL 145 +G M Y +++ + + + + + L+ + + T + + Sbjct: 130 IGMAAMRLPAMCVYSYG----IVLLSVVLAIAISFIALLFAFKFRKDASTWNWRRFGSAI 185 Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALS-TQAIMSMHVLDISLAGMLATALSFFTYIT 204 L+ L+I + + F L ++ I + + + T + Sbjct: 186 LLGLAIPIMHYVGMAAVSFHLMPGKDSNLVNVVRASDLNTAGIVIITLALLGIVILTSVL 245 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + L ++ +I A++ E + AE + AKS FLA+MSHE+RTPL Sbjct: 246 DRRYSLQAVQLELSEQRYRMIE----AEAAGRERVRAAEASSQAKSEFLANMSHEIRTPL 301 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+G +++ + + ++Y+ + SG LLN+IN+ILD S+IEAG+ EL E Sbjct: 302 NGIIGMTDLALETEL----TQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIELEEI 357 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383 +L + + + L LRA EK +E+ + P ++ V D +RQ++LN++ NA+KFT Sbjct: 358 DFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAIKFT 417 Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + G + + V + I D G GIA ++ T+ SF Q + G G Sbjct: 418 SK-GEISLKVKSDLIEEKKSILHFIITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTG 476 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 LGL I++ ++ GG+ + S++ G + +P V I Sbjct: 477 LGLTISRCLVEMMGGKLWVESEVGVGSQFHFTIPMKYVDTPI 518 >gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium HP15] Length = 902 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 91/317 (28%), Positives = 151/317 (47%), Gaps = 26/317 (8%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + F Y L + + + + EL AK ++ + AE +LAK Sbjct: 494 VLIAILVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAREAEAASLAK 553 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTP+NA++G+S+++ + + Y+ I + LL LIN+IL Sbjct: 554 SEFLANMSHEIRTPMNAVIGYSDLLSNSV----TDPQQRNYLDAIRAGSRSLLMLINDIL 609 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 DLSRIEAG+ L SA+S+ ++ + + LRA+E+ I + +D + ++ DE + Sbjct: 610 DLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQGITLEVSVDSRMPGAMMLDETRL 669 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------------------YISIKDNGP 410 RQV+ NL+ NA+KFT GG V V + + +++ D+G Sbjct: 670 RQVLFNLVGNAIKFTHDGG-VTVRATAKPLKKRSAEAEQNPEAPERQYYKLIVTVSDSGI 728 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI ++ + +F Q G GLGL I++ + GG+ + S+ G Sbjct: 729 GIPPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTV 788 Query: 471 ILPNTRVLNFIPEDNHE 487 LP RV + + E Sbjct: 789 TLP--RVEATVEQAEDE 803 >gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1391 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 9/256 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL++ ++ E R+RA + AKS FLA+MSHE+RTP+N +LG +E++ + + Sbjct: 816 ITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNL----D 871 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I +SG LL +IN+ILD S+I+AG+ L + +L + + + ++ RA+ Sbjct: 872 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAK 931 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EK++E+ +++P L S++ D +RQ++ NLL NAVKFT G V VT + Sbjct: 932 EKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRL 991 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 IS+ D G GI E ++ V F Q + +G GLGL I ++ GG + S Sbjct: 992 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESA 1051 Query: 462 LREGVE--VIAILPNT 475 +G LP Sbjct: 1052 EGKGSTFWFTVTLPRA 1067 >gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 908 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 154/369 (41%), Gaps = 10/369 (2%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 L L + IY + + + + A Q S Sbjct: 406 ALFELSAALSGQLTEQQIYALLVKHLHGAGFGFGYVAIVGTAPAGGVAPIYAECGQPQRS 465 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + ++ IL A + + ++ + Sbjct: 466 QVPAASVPLMIGDEQVGAICVQGTVNVHASQPILIAVANQAATALARARLYASLEQAKHL 525 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE + AKS FLA+MSHELRTPLNAI+G+SE+++ + + + I IH +G+HL Sbjct: 526 AEGASRAKSAFLANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPD-IQKIHHAGRHL 584 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L LIN+ILD+S+IEAG+ EL SL+ +V I + A + + + L + Sbjct: 585 LGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECAADLGMM 644 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEG 415 AD +RQ+++NLLSNA KFT G+V + V I D G G++E Sbjct: 645 AADLAKLRQILVNLLSNACKFT-QHGQVTLRVQRLRSETDPQSGTVVFEIADTGIGMSEE 703 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +I + F Q ++ G GLGL I+ GG ++S+L G I LP Sbjct: 704 QIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGSTFIVTLPTN 763 Query: 476 RVLNFIPED 484 L F PE Sbjct: 764 --LPFAPEQ 770 >gi|163793169|ref|ZP_02187145.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181815|gb|EDP66327.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 430 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 180/426 (42%), Gaps = 7/426 (1%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 L+ I + W L V A + L K + G+ VW +++ Sbjct: 4 LAVGSLLVVIAWGNVSEVLLVGWLLAMAGVTANRIVLWKAFSARPLATGDAAVWERRIVI 63 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 I G+ W + L P ++ ++ L+ + + A L + Sbjct: 64 SVIVSGVLWAISGLPIAFGNLPVHIEGVVPVSVAGMLAGAIFALTPSTKAFRLYAIIAAL 123 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + L ++++GM L ++ + + E L+A+ Sbjct: 124 GPILGFLAVGDRLHLAVSGMGLVYLLVVLLWGRDAGRTTEGAIRLRLENQALVAD----- 178 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 R+ AE K A++ HELRTPLNAI+GF++ ++ E GPL N Y++Y Sbjct: 179 --LSAVREGAEMAERLKRESFANLGHELRTPLNAIIGFAQSLDAELWGPLGNPRYRDYAK 236 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I SGQHL LI +ILDLSR +AG EL E+ + + VR C ML A + + Sbjct: 237 AIADSGQHLYVLIQDILDLSRHDAGILELDETTVDVAAAVRTCRKMLGGSAASNGVSLAT 296 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 + V D +RQ+++NL +NA++FT GGRV + + ++D G G+ Sbjct: 297 TVPDEGLWVTGDSTKLRQIVINLAANAIRFTPAGGRVTIAACRLESGETELRVEDTGIGL 356 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +IP L F Q S G GLGLP+++ + HGG I S+ G V +L Sbjct: 357 DPEDIPRALEPFVQVSRDRARESGGAGLGLPLSKRLTELHGGVLEIHSRRGTGTVVRIVL 416 Query: 473 PNTRVL 478 P R Sbjct: 417 PAWRAA 422 >gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 559 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 3/256 (1%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 ++ ++ + +E KS FLA+MSHELRTPLN+I GF +I G + Sbjct: 296 ILTNARKMIKTIEQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEI- 354 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 NE ++ + +H S HLLNLIN+ILD+S+IEAGR S+ ++ D++ E + + L Sbjct: 355 NEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLI 414 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K +++ +I + +++D++ + Q++LNL+SNA+KFT G V + G I Sbjct: 415 SKKEVKLITEIPDEIPEIYSDKRRVFQILLNLVSNAIKFTEK-GEVRIKCE-VDGNKLKI 472 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI E ++ T+ +F Q S + + QG GLGL +++ ++ GG+ + S+ Sbjct: 473 SVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYG 532 Query: 464 EGVEVIAILPNTRVLN 479 +G LP V Sbjct: 533 KGSTFTFTLPLKSVEE 548 >gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 404 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 12/279 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + L A ++E + A+ N+AKS FLA+MSHE+RTP+ Sbjct: 127 KRVIRHARGRFRLEMELMESNRRLGEAAVRAEELAREAQSANIAKSEFLANMSHEIRTPM 186 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + ++ + Y I SGQ LL LIN+ILD S+IEAGR EL Sbjct: 187 NGVIGMASLLLAEDL----SDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCR 242 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383 S ++V+E ++LQ +A +NI + ++ P + +V D +RQV+LNL+ NA+KFT Sbjct: 243 PFSPRELVQEVAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFT 302 Query: 384 AIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 IGG V + + + ++KD+G GI ++ + F Q + G Sbjct: 303 EIGG-VAMELSPAPADPAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGG 361 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL I + +M GG+ + S+ +G +P Sbjct: 362 TGLGLAICRRLMELMGGEIGVESEEGKGSTFWFTVPLRP 400 >gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma proteobacterium HTCC2148] gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma proteobacterium HTCC2148] Length = 1484 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 13/317 (4%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++L + + A AL + + Q + +L +++ Sbjct: 778 ALSLPVVVSPPPWLSPGAYAAYATFALGIAALLIVRQRR---AGFRVQLRQRELENKVQE 834 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + +K AE N AKS FLA+MSHE+RTP++ ++G +E++ + +E K++ Sbjct: 835 RTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDL----SEQQKQF 890 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 H SG+ LL+LINEILD S+IEA + EL L++++ E + A K + + Sbjct: 891 ARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLAL 950 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYIS 404 D + + D +RQV++NL+SNA+KFT G V VT + IS Sbjct: 951 NSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNIDVCVTYKNSEDDRNKNDVTIS 1010 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G G+ V F Q + G GLGL I++ + G I S+ Sbjct: 1011 VKDTGIGMDAATQNRVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNI 1070 Query: 465 GVEVIAILPNTRVLNFI 481 G ++ +P + V Sbjct: 1071 GTDLSVTVPFSVVQPQT 1087 >gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2] gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1] gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 925 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 179/388 (46%), Gaps = 24/388 (6%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L W L L GT Y +++ S L+ A L ++AL + A+ P+ + Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLIAAGLGVTALLALRMSRAINA---PLELISQGV 204 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------E 229 A + ++ L M + L + ++ D E E Sbjct: 205 AQLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIE 264 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P ++ Sbjct: 265 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQD 320 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I +S + LL +INEILD S+IEAG+ L +L D++++ + ML A EK +E Sbjct: 321 YLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLE 380 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404 + + + D + ++Q++ NL+ NA+KFT GG V V IS Sbjct: 381 LVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRIS 439 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G G++E + + +F Q ++ G GLGL I++ ++ GG+ + S E Sbjct: 440 VQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGE 499 Query: 465 GVEVIA--ILPNTRVLNFIPEDNHESTQ 490 G E LP +R N P + + Q Sbjct: 500 GAEFWISLSLPKSRDDNEEPGASWAAGQ 527 >gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1076 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 24/283 (8%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + A+L + + RA+ + KS FLA+MSHELRTP+NA++G + ++ + Sbjct: 521 TARQQADAKLRNVNAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTS 580 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + ++++ I SG LL LIN+ILD S+IEAG+ E+ E +L + E + + Sbjct: 581 L----DAQQQDFVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKL 636 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + RA +K +EI DP L + D +RQV++NLL+N VKFT G V V V + Sbjct: 637 VAPRAFKKGLEIAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFT-DNGEVIVYVKEVT 695 Query: 398 GRGQ----------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 Q ++KD G GI E + + SF Q + G GLG Sbjct: 696 AEIQDREGSGSEGQSPRRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLG 755 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIP 482 L I++ + GG+ + S++ G + P + P Sbjct: 756 LAISKRLCELMGGKIWVDSEIGIGSTFTFTIAAPIADTFDCAP 798 >gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 600 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 111/265 (41%), Positives = 160/265 (60%), Gaps = 5/265 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + L + L+++ + RAE N +KS FLA+MSHELRTPLNAI+G Sbjct: 334 TVRDLETSRRKLQEQARQLVDLAEKYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIG 393 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++E G L + YKEY GDIH SG HLL LIN+ILD+S+IEAGR L + L Sbjct: 394 FSEIMESGLFGELGSPKYKEYAGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELS 453 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + ++ RA+ + I ++ P L +V AD++ ++QV+LNLLSNAVKFT GG + Sbjct: 454 EVVEESLRLVSGRAEVAKVHIANEMGP-LPTVDADKRAVKQVLLNLLSNAVKFTPAGGSI 512 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 H+ G TSGR IS++D G GI +P + F Q + +G GLGL +++S++ Sbjct: 513 HLR-GETSGRFVTISVEDTGIGIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLV 571 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG ++ S G +V LP Sbjct: 572 ELHGGALVLESTEGVGTKVSFTLPL 596 >gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] Length = 2059 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 12/274 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++L + +++I L+ + ++ AE + AKS F+A+MSHE+RTP+N I+G ++ Sbjct: 1320 EMLQLKVTINEMIHNLKETTIKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTD 1379 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +EY+ + S LL +IN+ILD S+IEAGR EL +S SL + Sbjct: 1380 LTLDTELTA----EQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQSDFSLRAHL 1435 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + L RA +K +E+ I + S+ D +RQ++ NL+ NA+KFT+ G V + Sbjct: 1436 YDTLKTLAWRAHQKGLELVCDIASDIPDSLVGDPGRLRQIVTNLVGNAIKFTSE-GEVDL 1494 Query: 392 TVGWTS--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V S+ D+G GI + ++ + +F Q +I G GLGL I+ Sbjct: 1495 VVKIDKYIDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYGGTGLGLTISTR 1554 Query: 448 IMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479 ++ G+ + SK +G P L+ Sbjct: 1555 LVELMKGKLRVVSKPGKGSTFEFTAQFPTKPDLD 1588 >gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 12/276 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + LE A ++E + A+ N+AKS FLA+MSHE+RTP+ Sbjct: 122 RRVIRHARGRFKLEMELRESNRRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPM 181 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + Y+ I SG+ LL LIN+ILD S+IEAGR EL Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 S ++V+E +++LQ +A +N+ + +I PSL + V D +RQV+LNL+ NA+KFT Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFT 297 Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 +GG V + + + ++KD+G GI +I + F Q + G Sbjct: 298 EVGG-VAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + ++ GG+ + S++ +G +P Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392 >gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 731 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 102/285 (35%), Positives = 158/285 (55%), Gaps = 8/285 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ L + N+ + + ++ L + + ++ AE+ N AKS FLA+MSH Sbjct: 294 FVDLISVFLERKNI-LEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSH 352 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+I+GFS +++ P E Y+ I SG HLLN+IN+ILDLSRIEA + Sbjct: 353 ELRTPLNSIIGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADK 408 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLL 376 L+ES L +++ + M+ A K +E+ + P + + AD K +RQVILNLL Sbjct: 409 LVLNESDFDLKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLL 468 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT G++ +T+ Q ++++D+G GI EI + +F Q ++A + Sbjct: 469 GNAIKFTDSTGKILITLNKLENNFQ-LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYE 527 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGLPI + I+ H G + S L +G + + I P L + Sbjct: 528 GSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIFPFFTRLEHL 572 >gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 603 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 7/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL + + ++ AE AKS FLA+MSHE+RTP+N+I+G SE++ + P Sbjct: 356 ITELHRYQQELERAKEAAEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSP--- 412 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ + R+ LLNLIN+ILDLS+IE+G + + S+ + VR + +L +RA Sbjct: 413 -DQRQFVTILTRASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAV 471 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +++ +IDP + + D +QV++NL+ N +KFT G V V + +G ++ Sbjct: 472 EKKLDLKLEIDPQVPEKILGDATRFQQVLINLIGNGLKFT-THGEVRVQLK-VNGHQLWV 529 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G G+A ++ + T F QG +I G GLGL I++ ++ GG + S++ Sbjct: 530 GVKDTGIGMAPEQMQGLFTRFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIG 589 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 590 QGSVFYFTLPL 600 >gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 925 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 179/388 (46%), Gaps = 24/388 (6%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L W L L GT Y +++ S L+ A L ++AL + A+ P+ + Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLIAAGLGVTALLALRMSRAINA---PLELISQGV 204 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------E 229 A + ++ L M + L + ++ D E E Sbjct: 205 AQLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIE 264 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P ++ Sbjct: 265 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQD 320 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I +S + LL +INEILD S+IEAG+ L +L D++++ + ML A EK +E Sbjct: 321 YLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLE 380 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404 + + + D + ++Q++ NL+ NA+KFT GG V V IS Sbjct: 381 LVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRIS 439 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G G++E + + +F Q ++ G GLGL I++ ++ GG+ + S E Sbjct: 440 VQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGE 499 Query: 465 GVEVIA--ILPNTRVLNFIPEDNHESTQ 490 G E LP +R N P + + Q Sbjct: 500 GAEFWISLSLPKSRDDNEEPGASWAAGQ 527 >gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 731 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 101/277 (36%), Positives = 156/277 (56%), Gaps = 8/277 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ L + N+ + + ++ L + + ++ AE+ N AKS FLA+MSH Sbjct: 294 FVDLISVFLERKNI-LEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSH 352 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+I+GFS +++ P E Y+ I SG HLLN+IN+ILDLSRIEA + Sbjct: 353 ELRTPLNSIIGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADK 408 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLL 376 L+ES L +++ + M+ A K +E+ + P + + AD K +RQVILNLL Sbjct: 409 LVLNESDFDLKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLL 468 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT G++ +T+ Q ++++D+G GI EI + +F Q ++A + Sbjct: 469 GNAIKFTDSTGKILITLNKLENNFQ-LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYE 527 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGLPI + I+ H G + S L +G + + I P Sbjct: 528 GSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIFP 564 >gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] Length = 571 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 + + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567 >gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1660 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 8/306 (2%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 L + L + AL + K + L+ A++ + E A L+ + + Sbjct: 1100 ALPLRLGNRVIGALDLQSRNLNAFRKDELSGLTILADQIAVAIENARAYELAQKAVEEMR 1159 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS+FLA+MSHELRTPLN+I+GFS VI GP+ N+T K+ + I+ SGQHLLN Sbjct: 1160 EVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPI-NDTQKQDLTAIYNSGQHLLN 1218 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ILDLS+IEAG+ ELS S +++ D++ + ++K I++ +I+ +L V A Sbjct: 1219 LINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKPIKLITEIEDNLPIVRA 1278 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPT 419 D +RQV++N LSNA KFT G + V +++ D GPGIAE + Sbjct: 1279 DATRVRQVLINFLSNAAKFTDE-GSITVRARRVRSPEGKPELMVTVTDTGPGIAEEDRSK 1337 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILPNTRVL 478 + F Q + G GLGL I +S++ HGG+ + S + G LP + Sbjct: 1338 LFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVGVGSTFFFTLPL-PLE 1396 Query: 479 NFIPED 484 P++ Sbjct: 1397 EGKPDE 1402 >gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 765 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 165/364 (45%), Gaps = 16/364 (4%) Query: 119 LCWTL-LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS-FFPVVVALST 176 W L + + T E L I LLI ++ L + F + L Sbjct: 118 AGWVLEMQVSTGMTAFLERLVIDLVGILLITGALLLYVRLALVSKLLQLNFAARTLNLEN 177 Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + A + + L + + +L + ++ + L K Sbjct: 178 LNRSLLPKKSRQPQKRAADSQDELDSLLQALERIRLSMLEDREQRRTVELALMREKEEKI 237 Query: 237 ETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ETR+ AE N AKS+F+A+MSHE+RTP+N ++G E++ T+ +++ + Y+G Sbjct: 238 ETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTL----DDSQRHYLGI 293 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I RSG L+N+IN+ILD S+IEAG+ L L +++ +C+ M ++NIE+ Sbjct: 294 IERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICS 353 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKD 407 I P+ + D ++QV++NL+ NA KFT+ G ++V + + S++D Sbjct: 354 ISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSE-GHIYVEARQVNASDADLPMIHFSVED 412 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G GI + + +F Q + G GLGL I + + GG+ + S+ + G Sbjct: 413 SGIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGST 472 Query: 468 VIAI 471 Sbjct: 473 FWFS 476 >gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 145/276 (52%), Gaps = 12/276 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E LE A ++E ++A+ N+AKS FLA+MSHE+RTP+ Sbjct: 122 RRVIRHARGRFKLEMELRVSNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPM 181 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + Y+ I SG+ LL LIN+ILD S+IEAGR EL Sbjct: 182 NGVIGMASLLLSEDLTA----EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYR 237 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383 S ++V+E +++LQ +A +N+ + +I P + ++ D +RQV+LNL+ NA+KFT Sbjct: 238 PFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFT 297 Query: 384 AIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 +GG V + + Y ++KD+G GI +I + F Q + G Sbjct: 298 EVGG-VAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGG 356 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + ++ GG+ + S++ +G +P Sbjct: 357 TGLGLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 147/275 (53%), Gaps = 10/275 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A I + A+ + ++ AE + AKS FLA+MSHE+RTP+NA++G +E++ Sbjct: 657 LFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLD 716 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N T +EY+ + SG+ LL++IN+ILD S+IEAGR++L ++ L + + + + Sbjct: 717 TDL----NSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTM 772 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 L +RA K++E+ +D + ++ D +RQ+I+NL+ NA+KFT G + + V + Sbjct: 773 RSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEE-GEIVLDVNY 831 Query: 396 T----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + ++D G GI E + + +F Q ++ G GLGL IA ++ Sbjct: 832 DFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEM 891 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG+ + S++ +G E +P + Sbjct: 892 MGGKIWVNSEVGKGSEFHFTARFELTEEEVPANEP 926 >gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 571 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL I + E + ++ E K+++ I + L Sbjct: 342 LDQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVDTEYSKKFLRIIETETDRMTRL 398 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS++++ L +IV+ + L + A +K + + +L V D Sbjct: 399 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + Q+ +N+++NA+K+T GG + ++ + ++KDNG GI + ++P + F Sbjct: 459 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTFTVKDNGIGIPKEDLPRIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I + I+ H G+ I S+L +G V LP ++ Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLPYSK 569 >gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 577 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL I + E + ++ E K+++ I + L Sbjct: 348 LDQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVDTEYSKKFLRIIETETDRMTRL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS++++ L +IV+ + L + A +K + + +L V D Sbjct: 405 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + Q+ +N+++NA+K+T GG + ++ + ++KDNG GI + ++P + F Sbjct: 465 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTFTVKDNGIGIPKEDLPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I + I+ H G+ I S+L +G V LP ++ Sbjct: 524 YRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLPYSK 575 >gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 560 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 13/364 (3%) Query: 122 TLLTLVEPGTWTPEYLTI-----YKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALS 175 ++L+ P + + + LLI + + ++ + L A Sbjct: 186 GAISLIMPMDIFLHGIKLNVYRHLSFSLLLIGVIVISMYLLVTRLVTRSLGELKGATAQV 245 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAEKDDLIAEL-EVA 231 Q + + I G + + L +++ + + + L+ E + Sbjct: 246 GQGDFDIDLNRIKAQGEIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIK 305 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + + E N KS FLA MSHELRTPL +++ F++++ + L E ++ + Sbjct: 306 QDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE--RQNL 363 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + Q+LL LIN ILDL++IEAGR EL + + D++ ++ A++K I Sbjct: 364 KYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWE 423 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGP 410 +DP +S + AD + +R+VI NL+ NA+KFT GRV + V I + D G Sbjct: 424 ISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRVIDTGI 483 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + F Q + G GLGL +A+ +++ H G+ + S+L +G + Sbjct: 484 GIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVV 543 Query: 471 ILPN 474 +LP Sbjct: 544 LLPK 547 >gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] Length = 571 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 + + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567 >gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum DSM 4136] Length = 836 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 179/424 (42%), Gaps = 28/424 (6%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 +TL + + +++ W + A G + + +P + + Sbjct: 147 ALTLVSAGLPYAASSRFISNSKGNIAPAEWIVAAAPINRADGTLMGTMVVEQPM-YNVRH 205 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 L +++++ A + +L + V DI+ + Sbjct: 206 LLSSPKLLAVLSIAGGAGL-----------LPGLFFSLYMGRRLGKRVRDITEGLLALRQ 254 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLSD--ETRKRAEEENLAKSRF 252 + + L E + I E K +SD +++AE AK+ F Sbjct: 255 GLLTHRLPQKGIDEIAEALQVFNETVEHLQIEEERKQKVISDSLAAKRQAESGMAAKADF 314 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+N I+G + ++ + E + I SG+ LL+LIN+ILD S Sbjct: 315 LANMSHEIRTPMNGIIGTTSLLLDSPLDN----EQMELVRMIRTSGESLLHLINDILDFS 370 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 ++E+ R L +SL + E + + +A EK +E+ + ++ + D + ++QV Sbjct: 371 KLESARMVLERLPVSLERLFHETMGIFAFKAAEKGVELNYHVSENIPRHITGDFQRLKQV 430 Query: 372 ILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSF 424 ++NL++NAVKFT G + V V +Y +S++D G GIA+ ++P + +F Sbjct: 431 LVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYTLLQVSVRDTGIGIAKDKLPLLFQAF 490 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + G GLGL I + + GG+ + S+L G +P + + Sbjct: 491 TQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVTSELGGGSNFFFEVPMSAAQDDAEAL 550 Query: 485 NHES 488 E+ Sbjct: 551 EEET 554 >gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 573 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 150/349 (42%), Gaps = 16/349 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + + + V+ + + L + + +AT L Sbjct: 218 VVMGRHLAIAMSYRGYANSLLWLEVLPPNEAPLWQAGHLQVLQS--IATYLGTAIAHAIL 275 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L +S Q L ++ R +AE N KS+FLA+ SHELRTPLN Sbjct: 276 LDQSRQLATRLQLANQTL----RQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNG 331 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GF ++ + E +++ + +RS HLL LIN++LD+++IEAG+ +L Sbjct: 332 IIGFIRLVLDGM--AESREEELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPC 389 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAVKFTA 384 L + ++ L+A++K +++ + P+ +W D + + QV+LNL+ NA+KFT Sbjct: 390 DLRALFKDVEAKTGLQAKQKGLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTP 449 Query: 385 IGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V V G I + D G G++ + + +F Q + G GLGL Sbjct: 450 K-GSVTVRADLLPGDPGMARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGL 508 Query: 443 PIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 I+Q ++ GG+ S G V +P R +P Q Sbjct: 509 AISQRLVEAMGGEINFYSLGEGLGSTVTFTVPLYR--QPLPGGEASPAQ 555 >gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] Length = 545 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + +++ + ++L +A EK I + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 781 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 145/281 (51%), Gaps = 10/281 (3%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 T L + N + ++ I E ++ ++ ++ AE N AKS+FLA+ Sbjct: 355 LEVLVDKRTSQLLEVNGSLEETNCMLEEEIEEHKLTETKLKAAKEEAERANSAKSQFLAN 414 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N I+G + ++E + + + + I S +HLL +IN+ILDLS ++ Sbjct: 415 MSHEIRTPMNGIMGMTSLLEFSKL----TDEQIDIVKMIETSSKHLLQIINDILDLSVMD 470 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 G+ EL I++ +++ E + A+ K +++ +D +L + D+ + QV+ N Sbjct: 471 VGKIELKPERINIFNLMNESRNLFTYLAENKGLKLEIIVDNNLPNEIILDKGRLMQVLSN 530 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L+ NA+KFT G++ V+V + S+KD G GI E +IP + F Q I+ Sbjct: 531 LIGNAIKFTEK-GKIQVSVDKVEDKENKVKLMFSVKDTGIGIKEEDIPRLFNYFTQLDIS 589 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 QG GLGL I+++I+ GG+ + S+ +G Sbjct: 590 ASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGSTFYFT 630 >gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] Length = 773 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 112/272 (41%), Positives = 153/272 (56%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + +E+E ++RAE N AKS FLA+MSHELRTPL Sbjct: 503 RRLFSFIQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCK 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 L I+ E + L +AQEKNI + I P L D + M+Q+ LNL+SNAVKFT Sbjct: 623 NTDLEPIISEAVRTLTPQAQEKNIVVTTNITPEL-HAEVDGRAMKQIFLNLISNAVKFTP 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + V + I D G GI + I + F Q + + G GLGL I Sbjct: 682 SGGNIDV-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V I+P T+ Sbjct: 741 SRSLLELHKGKLEITSKEMKGTTVTIIMPITQ 772 >gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 740 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 3/276 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + E + A+ L E ++ AE N KS FLA+MSHELRTPLN+I+GFS+++ + Sbjct: 463 QTCRDVTERKEAEKLLQE-KQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIY 521 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L NE + +G+I RSG+HLLNLIN+ILDLS++EAG+ EL L + +L Sbjct: 522 GDL-NEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLL 580 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A K IE+ ++D SL+++ ADE Q++ NLL NA+KF+ G V + G Sbjct: 581 SPIADRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKR-KGD 639 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++KD G GI + + F Q + QG GLGL + + I+ HGG Sbjct: 640 TVEITVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFN 699 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 S++ EG +P + E++ A Sbjct: 700 SRIGEGSTFAFTIPINGNKRTEGDSEVEASNIAGKA 735 >gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 932 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 24/346 (6%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 T + +I L+I+ L + + P+ + S + L Sbjct: 236 GTAGATVLQIILAFVIILAIAVLIRILFTQVTY----PIRDYILKLKDFSFDDEEFRLVP 291 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 L+ L++S L + + A+ R A++ N AKS Sbjct: 292 KGTVELNMLAENFNELYRSFHNELVRR----------KKAEETMKAARDEADKANRAKSE 341 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLASMSHE+RTP+N+I+G+ +++ + P +EY+ +I + ++LL +IN+ILD Sbjct: 342 FLASMSHEIRTPINSIIGYQYLLKNSVLSP----KQREYVENIGLAAKNLLAIINQILDF 397 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAGR L E ++ D++ E +I++ + A+ K IE+ K+D + + D ++Q Sbjct: 398 SKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQ 457 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 V++NL+SN +KFT G + + V S+ D G GI++ + + F Q Sbjct: 458 VVMNLVSNGIKFTHE-GYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLFQVFTQ 516 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G + G GLGL I + ++ G+ + S++ +G L Sbjct: 517 GDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562 >gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 729 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 136/268 (50%), Gaps = 3/268 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + E+ EL + + + + K FL+++SHEL+TPL +I+G Sbjct: 463 TILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSIIG 522 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++E++ ++G L E K + R+ + L L++ +L LSR +AG + +++ Sbjct: 523 YTELLNDGSLGELG-EEQKHAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNIS 581 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + I LQ++ +EKN+E+ +KI+P L + D + + N++ N++KFT GG + Sbjct: 582 ELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSI 641 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + +I+IKD G GI + I + F Q + K G GLGL I ++I+ Sbjct: 642 TIFAN-KEDEYIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTIV 700 Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTR 476 H G+ + S+ +G EV LP Sbjct: 701 EAHEGEIWVESEGKGKGTEVHIKLPVAE 728 >gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 951 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 14/352 (3%) Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS------LAGMLA 194 +L +L + L + L V + + + + + + L ++ Sbjct: 168 AFMVMLGSLLCAYLVSLRLQGVVSAPIAELARTMQGVSRDQNYAVRVVKSNNDELGALMD 227 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 I + + + ELE+ + + A+ + AKS+FLA Sbjct: 228 GFNEMLGQIQTRDNELASYRTQLELKVALRTRELELTVAELQRAMEAAQAASRAKSQFLA 287 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+N +LG +E++ + +E + ++ + RSG+ LL++IN+ILD S+I Sbjct: 288 NMSHEIRTPMNGMLGMAELLMATRL----DEQQRRFVSSVRRSGEALLSIINDILDFSKI 343 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373 EAG+ EL E+A +L D V + I +L A K +EI ++ + V D+ + QV++ Sbjct: 344 EAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDVPPVLLGDQVRVHQVLM 403 Query: 374 NLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 NL+ NAVKFT G + + I + D G GI++ + F Q + Sbjct: 404 NLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIGISDEVKGRIFDGFSQADNS 463 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL IA+ ++ GG+ + S++ G L + + P Sbjct: 464 TTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLKLHKEASERP 515 >gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] Length = 737 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 5/253 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + A S ++ R AEE N AKS FLASMSHELRTP+N +LG +++E G + Sbjct: 343 VDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLME----GSVKQ 398 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + S ++LL ++++ILD SRIEAG+ L + S+ +++ + + + Sbjct: 399 EVNKRRLQIASNSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIEVE 458 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I + W DE +RQ+++NL+ NA KFT G++ V R +S Sbjct: 459 KKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFT-QNGQIIVRAQSGENRDLKLS 517 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + SF Q + G GLGL I + + G + S+ + Sbjct: 518 VQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQGK 577 Query: 465 GVEVIAILPNTRV 477 G E LP Sbjct: 578 GSEFTLHLPLREA 590 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 10/305 (3%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 VA +I S+ T Y + ++ + I E Sbjct: 767 VAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQIIARDITESRRV 826 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R +A E + KS F+A+MSHE+RTPLNAI+G +E+++ + +E +E++ Sbjct: 827 AEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPL----SERQREFV 882 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I S Q LL++IN+ILD S+IEAG+ L E L+ +V ML A+ K I + Sbjct: 883 QTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLM 942 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIK 406 +DP++ + D +RQV+LNLLSNAVKFT G V + V S ++ Sbjct: 943 TFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQ-GEVLLRVLPHRAADSEVELLFEVR 1001 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + F Q + G GLGL I+++++ GG S+ G Sbjct: 1002 DTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGS 1061 Query: 467 EVIAI 471 Sbjct: 1062 TFRFT 1066 >gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 554 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 161/365 (44%), Gaps = 10/365 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 AI + L ++ I+ L+ L I L+ L V + Sbjct: 188 AISIVIPLDVYMDSEKGAVVQDVIFFGGMLVACLVIMYLALTYLVTRPLSKIQAGVERIQ 247 Query: 176 TQAI---MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 T + ++ + ++ + ++ A+ + A LE + Sbjct: 248 TGDLDVELAHTESSREMNTLMTEFNEMAHELAGIYSNLEAQVQVRTAQLAEANAVLERQR 307 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPLNNETYKEY 290 + +E R +EN KS FLA MSHELRTPL +I+ F+E++ E ET +E Sbjct: 308 AQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELLNRNSEPADEKEAETRRE- 366 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I + + LL +IN+IL++SR++AGR E++ + L DI ++Q A K I Sbjct: 367 ---IEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAF 423 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNG 409 +IDP + V AD + +R V+ NL NAVKFT GG V +++ W ++ + D G Sbjct: 424 ACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTG 483 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA+ + + F Q + G GLGL +A+ HGG + S+L G Sbjct: 484 IGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFT 543 Query: 470 AILPN 474 +P Sbjct: 544 VRIPV 548 >gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 609 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 110/391 (28%), Positives = 171/391 (43%), Gaps = 27/391 (6%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G ++ + P T L + L + + S L M+ + + V L + Sbjct: 178 GDTIGMVKITLPLDKTQSRLAENNAILLAMGIVTSFL--AMVAAYAIVRYVIVKPVLYLK 235 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 I F +++ + +++ Q E L+ Sbjct: 236 DISEEIARGTLDLRADIRTGDEFEELSHAFNRMLRHLVTVQDELKLANNSLDSKVDELAR 295 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 E N K+ FLA+MSHELRTPLN+ILGFS+V+ N+ K Y+G+I S Sbjct: 296 ANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVL---GSADNLNDKQKRYLGNISSS 352 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ LL LIN+ILDL++IE+G+ EL S+ +IV + + + A KNIE+ P Sbjct: 353 GQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMCSPD 412 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------------SGRGQY 402 + ++ D ++Q++ NLLSNAVKFT GGRV V V + Sbjct: 413 MPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARDLVQ 472 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQSIMANHGGQF 456 IS+ D G GI + + F Q S + +G GLGL I + + GG+ Sbjct: 473 ISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLLGGEV 532 Query: 457 LIRSKLREGVEVIAILPNT-RVLNFIPEDNH 486 + S+ +G + +P + R N +P D+ Sbjct: 533 KVESEFGKGSTFVVRIPISVRASNELPVDSE 563 >gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] Length = 773 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 110/272 (40%), Positives = 148/272 (54%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E ++RAE N AKS FLA++SHELRTPL Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ Y+EY+ DIH SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCK 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L I+ E I L +AQEK I I I P L D + MRQ+ LNL+SNAVKFT Sbjct: 623 NVDLEPIISEAIRTLTPQAQEKKISITANIAPKL-HAELDCRAMRQIFLNLISNAVKFTP 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + + + IKD G GI + I + F Q G GLGL I Sbjct: 682 SGGSIDI-CAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPFEQVENQFTKTHTGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I S+ G V +P + Sbjct: 741 SRSLLELHKGKLEIASEEENGTTVTITIPIKQ 772 >gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1359 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 135/270 (50%), Gaps = 11/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++A+ ++ AE N KS FLA MSHE+RTP+NA++G + ++ + Sbjct: 703 ITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQLTA--- 759 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I S LL +IN+ILD S+IE+G+ L E L + E + +L +A+ Sbjct: 760 -QQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLSSKAR 818 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 +K IE+ +D + + D +RQ+++NL+SNAVKFT G V ++V T+ Sbjct: 819 DKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTET-GDVVISVTPTAEISEEQ 877 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI+ + + F Q + G GLGL I+Q + GG+ + Sbjct: 878 IRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGGKMWV 937 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488 S+ G + T V + DN E Sbjct: 938 ESEEGVGSTFYFTVIATPVSSDSEPDNREQ 967 >gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] Length = 571 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 + + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + I+ + ++L +A EK I + + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQVNVLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567 >gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 631 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 139/271 (51%), Gaps = 4/271 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + I + + R AE N AKS FLA+MSHELRTPLN Sbjct: 355 RLVYAEDGSMLYAEGTIQEITARKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLN 414 Query: 266 AILGFSEVIELETM--GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 AI+G+SE++ +T P E ++ I I+ +G LLNL+N++LDL+++EAG+Y+++ Sbjct: 415 AIIGYSELLMDDTDFDDPTMVEQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAA 474 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 L +VR+ I + AQ+ ++ + + L + D +RQ++LNLLSNA KFT Sbjct: 475 ETFDLNSLVRDLIATINPMAQKNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFT 534 Query: 384 AIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G ++++V + + + ++D G G+ + ++ + F QG + G GLGL Sbjct: 535 KA-GSINISVSFDPASQHVQCRVRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGL 593 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + G + S +G + P Sbjct: 594 ALCRHFIELLNGSIQVESVFGQGSIFTIVFP 624 >gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034] Length = 632 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L +V L + ++ L + + + + +S Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 A+K + + ++ ++ + R +AE N KS FLA+MSHE+RTP+N I+G + ++ Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P KE++ I S Q L+ +I++ILD S++EAG+ EL+ ++ + Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++AQ+KN+++ IDP L V DE ++QV+ NLLSNAVKFT G ++ V++ Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386 Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D+G GIA+ V F Q + G GLGL I ++ Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG + S+L G +P T V++ +P Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480 >gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329] Length = 632 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L +V L + ++ L + + + + +S Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 A+K + + ++ ++ + R +AE N KS FLA+MSHE+RTP+N I+G + ++ Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P KE++ I S Q L+ +I++ILD S++EAG+ EL+ ++ + Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++AQ+KN+++ IDP L V DE ++QV+ NLLSNAVKFT G ++ V++ Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386 Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D+G GIA+ V F Q + G GLGL I ++ Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG + S+L G +P T V++ +P Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480 >gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 1014 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 157/360 (43%), Gaps = 15/360 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSI----SALSNFMLPYAVFLSFFPVVVALSTQ 177 +LTL P + L + + T LS AL++ + + +V+ L Sbjct: 225 GILTLGSPEICASKMLLPFHNQTGCFLLSGFDQRQALASSKRVLYLGIGVCAMVLLLIVP 284 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SL 234 + + + + L A E + Sbjct: 285 YAIILSHRLTHPLMKIVDIARRVPTAPDTIEWLPDSDNEIGILNRSLQAMTEQLQSSIQE 344 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R+ AEE + AKS+FL +MSHE+RTP+N ++G +E++ + E ++ + Sbjct: 345 LQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLA----EEQRQIADTV 400 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SG+ LL +IN+ILD S++EAG+ +L + IV E + +AQ K +E+ + Sbjct: 401 AESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVDM 460 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGP 410 + + D +RQV++NLLSNA+KFT G V + + + +SI+D+G Sbjct: 461 ADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSATIVVSIRDSGI 520 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI IP + F Q + G GLGL I Q ++ + GGQ + S+ +G Sbjct: 521 GIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFWF 580 >gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 145/278 (52%), Gaps = 12/278 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + L A ++E + A+ N+AKS FLA+MSHE+RTP+ Sbjct: 122 KRVIRHARGRFKLEMELMESNRRLGEAAVRAEELAREAQAANIAKSEFLANMSHEIRTPM 181 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ E + ++ + Y I SGQ LL LIN+ILD S+IEAGR EL Sbjct: 182 NGVIGMASLLLAEDL----SDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCR 237 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383 S ++++E ++LQ +A +NI + ++ P + +V D +RQV+LNL+ NA+KFT Sbjct: 238 PFSPRELIQEVAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFT 297 Query: 384 AIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 +GG V + + + ++KD+G GI ++ + F Q + G Sbjct: 298 EVGG-VAMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGG 356 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GLGL I + +M GG+ ++S+ +G +P Sbjct: 357 TGLGLAICRRLMELMGGEIGVKSEEGKGSTFWFTVPLR 394 >gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1398 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 17/330 (5%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + ++ + + ++S+ ++ + + +L AE Sbjct: 787 ALKMILASQGIKTLISLPLIYHEHCFGFVGFDA--VREVKKWGDDEISLLRVLAELFTNA 844 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ + R AE N AKS FLA+MSHE+RTP+N ++G + ++ + ++ Sbjct: 845 ELRFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDL----SD 900 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +++ + SG+ LL +IN+ILD S+IEAG+ EL L ++ ++ L+A E Sbjct: 901 EQRDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVE 960 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 KN+E + P + + D +RQ++ NL NA+KFT G V V V S Sbjct: 961 KNLEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFT-QNGNVTVAVSMQSENNGDAV 1019 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+KD G GI E ++ + SF Q + G GLGL I++ ++ GG+ + S Sbjct: 1020 LRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVIS 1079 Query: 461 KLREGVEVIAIL-----PNTRVLNFIPEDN 485 G E + P + P Sbjct: 1080 HEGNGSEFWFTIFLKKQPFYSTIETQPTSA 1109 >gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 842 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 19/325 (5%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL--SCQ 218 ++ + FF + L +S + A L ++ S ++ L + Sbjct: 356 QSLIIGFFFIGSILVAFIWVSRISRPLDFLTNYAKQLPSQDFLKDDQPNSTIQSLAVRSR 415 Query: 219 AEKDDLIA-----ELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 E L E+E+ K++ + ++ AE+ N AKS FLA MSHE+RTP+N +LG + Sbjct: 416 DEVGRLAESFIFMEVELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMA 475 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ + +E ++Y+ I SG+ LLN+IN+ILD S+IEAG+ +L L ++ Sbjct: 476 SILADTPL----SEKQRKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKLSEL 531 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + RA KNIE+ I + + D +RQ++ NL+ NA+KFT G + Sbjct: 532 LSYLTDIFSPRAHSKNIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQ-GSIQ 590 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + V + IS+ D G GI G+ + SF Q + G GLGL I++ Sbjct: 591 IIVEISDEDARNMKLKISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLGLSISK 650 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 S++ GG+ + S+ EG Sbjct: 651 SLVELMGGELGVESRPGEGSSFWFS 675 >gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 663 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 13/368 (3%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF---FPVVVALSTQAIMSM 182 L P+ + ++ S LIAL+ SA+ LP A + +AL Sbjct: 291 LQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALLAANDTPP 350 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---------LIAELEVAKS 233 L L+ ++ + + F + I+ ++ I + + + Sbjct: 351 GHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDITDRKHIEQ 410 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E + AE N K+ FLA++SHELRTPLNAI+GFSE+++ E GPL +Y+ Y+ D Sbjct: 411 TLREAKDEAERGNRTKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRAYVDD 470 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 IH SG HLL LIN+ILD+S+ EAG +L E+A+ + D++R I +L RA+ I + + Sbjct: 471 IHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAISLTED 530 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + P+L ++ ADE+ +RQ+ILNL SNAVKFT GG V + T I + D G G+ Sbjct: 531 LPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFV-IRVADTGIGMT 589 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ V+ F Q + +G GLGLP+A++++ HGG + S+ G V P Sbjct: 590 PEDVQRVMEPFVQADTRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVTVTFP 649 Query: 474 NTRVLNFI 481 +R+++ Sbjct: 650 PSRIIDQS 657 >gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] Length = 545 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + +++ + ++L +A EK I + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 914 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + R+ AE ++AK +FLA+MSHE+RTP+NA++G +E++ +G + +EY+ Sbjct: 249 ELVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELL----LGTDLDTEQQEYVEI 304 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + + LL LIN+ILD S+IE+G+ E + A L ++ M+ AQ K +E Sbjct: 305 VKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEFTCF 364 Query: 354 IDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDN 408 +DP + D + +RQV++NL NAVKFT G V + I I D Sbjct: 365 VDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEK-GNVDIHAAMIGEEDGMVLIRFAISDT 423 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + V SF Q + +G GLGL I++ ++A GG+ + S++ G Sbjct: 424 GMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGGRMGLDSEVGVGSTF 483 Query: 469 IAILPNTRVLNF 480 LP + Sbjct: 484 WFTLPFAKQDQP 495 >gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC 700345] gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 929 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 162/352 (46%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLFFTFRLLKNV---TQPITDMVRVVAKIREGKLDTRLTGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA+E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I RS +LL++IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L SL + + E + ML A+EK + + +D + V D Sbjct: 355 DILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDVSGDA 414 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 Q+I NL+ NA+KFT G ++ + + +I I D G G+ E + ++ Sbjct: 415 MRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDTGIGVDEQQQSSLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S+ +G LP Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTFWFSLPL 526 >gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 19/332 (5%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + A+ L + + + I + + + + +L FK Sbjct: 75 VLAMRAAALEVPIVILTSHDDSDFAFSTIEAGAQDYLVKGVIGSDSLKRVIRHARGRFKL 134 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 ++++ L E A + R+ A+ N+AKS FLA+MSHE+RTP+N ++G Sbjct: 135 EMELMES---NRRL---GEAAVQAEELARE-AQAANIAKSEFLANMSHEIRTPMNGVIGM 187 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ E + ++ + Y I SGQ LL LIN+ILD S+IEAGR EL S + Sbjct: 188 ASLLLAEDL----SDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRE 243 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +V E ++L+ +A +NI + ++ P + + V D +RQV+LNL+ NA+KFT +GG V Sbjct: 244 LVEEVAVLLRPQAAAQNIALTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGG-V 302 Query: 390 HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + + + ++KD+G GI ++ + F Q + G GLGL Sbjct: 303 AMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLA 362 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + ++ GG+ + S+ +G +P Sbjct: 363 ICRRLVELMGGEIGVESEEGKGSTFWFTVPLR 394 >gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] Length = 545 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + +++ + ++L +A EK I + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 632 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 10/335 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L +V L + ++ L + + + + +S Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 A+K + + ++ ++ + R +AE N KS FLA+MSHE+RTP+N I+G + ++ Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLS 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + KE++ I S Q L+ +I++ILD S++EAG+ EL+ ++ + Sbjct: 271 DTKL----DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++AQ+KN+++ IDP L V DE ++QV+ NLLSNAVKFT G ++ V++ Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386 Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D+G GIA+ V F Q + G GLGL I ++ Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG + S+L G +P T V++ +P Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480 >gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 940 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 12/265 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+E + +++ E ++RAE + AK+ FLA+MSHE+RTP+N I+ + ++ + + Sbjct: 539 RDISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTELTS- 597 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ + S ++LL LI++ILD+S+IEAG+ EL + S+ + E + R Sbjct: 598 ---EQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPR 654 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 +K ++I ++ L + D +Q++LNLL NA+KFT GG + + ++ Sbjct: 655 ITQKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGG-ISIVAKPSARHDN 713 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I I D G G++ + V + F Q + G GLGL I + ++ GG+ Sbjct: 714 QLIMRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIW 773 Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482 S+ G LP V+ P Sbjct: 774 AASRPGSGSTFFVELPF--VVREAP 796 >gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 798 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 167/305 (54%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 +S +G + A + + K + A + E A+ Sbjct: 484 GAGISTVWFKPILSRSGKVIGAFAMYFAEARTPGKWEEDYVMGAAHLASIAIERRRAEEG 543 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + + AE N AK++FLA+MSHELRTPLNAI+GFSE++ E GPL ++ Y+EY DI Sbjct: 544 LRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGPLGSDRYREYTNDI 603 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H SG+HLLN+I++ILD+S+IEAGRY L E I + +++ + M++ R EK + + Sbjct: 604 HGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRARTLEKRQNVNLHL 663 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ +V AD++ MRQ++LNLLSNA KFT GR+ + V +S+ D+G GI Sbjct: 664 PEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDLMVSVADSGIGIPR 723 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ VL FGQ G GLGLPI +S++ HGG F + S L G I P Sbjct: 724 NKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLESTLGAGTTATMIFPA 783 Query: 475 TRVLN 479 R+L+ Sbjct: 784 HRLLS 788 Score = 80.7 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 5/227 (2%) Query: 28 PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT--QNPIFPMWSLITLAVYAA 85 D + + + + +A T+ T + W + LAV+ Sbjct: 33 SPSRSQDIRLELYRTIMRAYRTLPVFFPTVAMALAFTFNTTYPEMLVAAWWFVLLAVHVE 92 Query: 86 NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW-TLLTLVEPGTWTPEYLTIYKSAT 144 ++ D +V W + + + W LL L + L I Sbjct: 93 YAFFQRRFFAEDSAAIDVDAWIKATAIRYWIMNVVWLGLLPLFWHPGSDVQNLAILMVFV 152 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + + ++ F L P++ + +I ++ +++ + I Sbjct: 153 VHVVMASQT--AFHLVPIFVSVTLPLIAVVIAVSICTLEAAYMAIGFGCIPTYLYLARIA 210 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + + DLI ++ A+ LS+E R RAEE N R Sbjct: 211 QQQRAAAYETFNLRFRNADLIRDIGKARDLSEEARLRAEEANAQLQR 257 >gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] Length = 796 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 19/349 (5%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 ++ +T + A L+ ++ F+L + +L + Sbjct: 152 LDRLGFTVKRYLQIVGAVSLVGMAG----AFILARLTAQGLIQPIHSLIMTMQQVQRDRN 207 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEE 245 L + L + +L +D+ L +E + +E +AE Sbjct: 208 YRL-----RVEGLSNDESGQLAAAFNDMLDEIQRRDENLEKTVEERTADLEEAVTKAEAA 262 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +LAKS FLA+MSHE+RTP+N +LG +E++ + +E IG I SG L+ +I Sbjct: 263 SLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDTY----QRELIGTIMSSGTSLVTII 318 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG++ L+E +L + + ++ RA EK++E+F + DPSL V+ D Sbjct: 319 NDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRYDPSLPEGVFTD 378 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVL 421 +RQVI NL+ NA+KFT G+V + V IS+ D G GI ++ + Sbjct: 379 GGRLRQVITNLVGNAIKFTDE-GQVLIDVTGAQSGETVDLRISVTDTGIGIPPEKLEAIF 437 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 F Q +G GLGL I ++I+ GG+ + S+L G Sbjct: 438 EKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATFFI 486 >gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 903 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LL L++S+L + L V P+ +S + LDI + G L L Sbjct: 150 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 206 Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + ++ + + I ++ + + +LE+ D +KRA+E K Sbjct: 207 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 266 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN+IL Sbjct: 267 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 322 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L + + E + +L A EK +E+ K+D + + + D + Sbjct: 323 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRI 382 Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +QV+ NL+ NAVKFT G V + +++D G GI+E + + +F Sbjct: 383 QQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFS 442 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG+ + S+L +G L Sbjct: 443 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 489 >gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1017 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 21/357 (5%) Query: 149 LSISALSNFMLPYAVFLSFFPV----VVALSTQAIMSMHVLDISLAGM-LATALSFFTYI 203 L+++++ A+ + V L + L + L + Sbjct: 216 LALNSMLAEEGVQALVAVPLALGTETVGILYVNDFAPREYDENHLCILDLLANQAAHAIQ 275 Query: 204 TYHLFKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 LF++ + ++ + L A + + + N AKS+F+++MSHELRT Sbjct: 276 KARLFETIEQEKAELKSLNEHLEARIMERTADLTSANEALTRANQAKSQFISNMSHELRT 335 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PL +I GFSE + +GPL NET +Y+ +I+ SG+HLL LIN ILDL++IEAG+ L Sbjct: 336 PLTSINGFSEFLIDGFVGPL-NETQTKYLKNINISGKHLLELINGILDLAKIEAGKMTLK 394 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + + ++ E +++LQ A + ++ + + D ++ + D +Q++ NL SNA+KF Sbjct: 395 LEKVDVAALLDEILLVLQGYATKTSVRLLLECDAAIPGIVLDRTKFKQILYNLCSNAIKF 454 Query: 383 TAIGGRVHVTVGWTSG-------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 + GG V + V + + ++I D G GI+ + + F Q Sbjct: 455 SPQGGEVRIVVDYNNSAAGQHNDDELESYARLTVAIHDEGIGISPEDQVHIFNPFEQADG 514 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + +G GLGL + Q ++ HGG + S +G + LP + P + Sbjct: 515 SHSRNYEGTGLGLTLTQRLVEMHGGSIEVNSAPDKGSCFVFTLPVEF-MQKAPVEKT 570 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 135/263 (51%), Gaps = 6/263 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ + AE+ N +KS FLA+MSHE+RTPLN I+GF ++ + Sbjct: 407 ITEQKRTYLELNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLL----YKDEKD 462 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + I S L++++N+ILD S+IE+G + + +++D + + I++ + RA+ Sbjct: 463 IKKQEKLKIIKDSSYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAK 522 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQY 402 EKNI I ID + + D +QV NLLSNA+KF+ V V V + Y Sbjct: 523 EKNITIKLSIDDKIPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIY 582 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D+G GI+ + T+ +F Q + G GLGL I + ++ GG+ + S+L Sbjct: 583 CEVLDSGVGISPSKTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSEL 642 Query: 463 REGVEVIAILPNTRVLNFIPEDN 485 G LP I +D+ Sbjct: 643 GVGSTFYFTLPIIEAKEDIDKDD 665 >gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 905 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 23/374 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 + T + +LI ++ S L F L +V P+ + + L Sbjct: 163 ATDRAMLLQYRDTFFAVIMVLIGVAFSTLFGFRLVKSV---TQPITNMVQAVHKIREGRL 219 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDE 237 D ++G L L + K+ + + + + ++E+ D Sbjct: 220 DTRVSGQLTGELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDM 279 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +KRA+E KS FLA+MSHELRTPLN ++GF+ + ++ P + +Y+ I +S Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKS 335 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 ++LL +IN+ILD S++EAG+ +L SL D + E + +L A +K +E+ ++D Sbjct: 336 ARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLRVDAD 395 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGI 412 + + D ++QV+ NL NA+KFT G V V + T + I+D G GI Sbjct: 396 VPDYLTGDPMRLQQVLTNLTGNAIKFTEQ-GNVDVHIEQTGSGNHKVRLNVQIRDTGIGI 454 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + + +F Q +I G GLGL I Q ++ GGQ S+L +G L Sbjct: 455 SQEQQHQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSL 514 Query: 473 PNTRVLNFIPEDNH 486 ++ +P+ + Sbjct: 515 DVE--VSPLPQTDQ 526 >gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] Length = 650 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 4/254 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E +L+ +++ +E + KS +A +SHELRTPL +I G+ E++ TM Sbjct: 399 EIRKSNEKLKKQAEELEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTM 458 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G + E+ K+ + +++ L LI+ +LDLS+IE G E+ I+L ++V + L Sbjct: 459 GAIT-ESQKKCLEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTL 517 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A EKNI I KI+ + D+ + QV+ NL+ NA+KF+ + G+V + G Sbjct: 518 KPLADEKNINIIYKIND--IIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQA-LKEGN 574 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +I I DNGPGI + ++ + F Q K + G GLGL + +SI+ HGG + Sbjct: 575 SVHIKIIDNGPGIPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVE 634 Query: 460 SKLREGVEVIAILP 473 SKL G I+P Sbjct: 635 SKLGSGSVFHIIIP 648 >gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1278 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + A+ E ++ AE AKS FLA+MSHE+RTPLNAI+GF++++ + Sbjct: 774 MSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS----FPS 829 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ I SG++LL LIN+ILDLS+IEAG+ LS S + L + E + + + + Sbjct: 830 GKEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 889 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398 K + P+L +V DE +RQV+ NL+ NA+KFT G V V V S Sbjct: 890 NKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQ-GHVKVQVRGTLHTEESK 948 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 IS++D G GI E + SF Q S G GLGL I++ ++ GG + Sbjct: 949 VDLTISVEDTGIGIRPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISV 1008 Query: 459 RSKLREGVEVIAILP 473 S+ +G +P Sbjct: 1009 ESEYGKGTTFTVRIP 1023 >gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 951 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E +A++ + + AE N+AKS+FLA+MSHE+RTP+N I GF E++E + Sbjct: 303 ITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSL--- 359 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E++ + + LLN+IN+ILD S+IEA + L + +L ++ + + + + Sbjct: 360 -EQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTL 418 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK I+++ IDP++ V D ++Q++ NLLSN VKFT G + + V + + Sbjct: 419 EKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDA-GEIAIKVDYFEEENEIA 477 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GI+ +I + SF Q + G GLGL I + ++ G+ + Sbjct: 478 LLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEITVD 537 Query: 460 SKLREGVEVIA 470 S L +G Sbjct: 538 SVLDKGSTFRF 548 >gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 704 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 100/447 (22%), Positives = 169/447 (37%), Gaps = 26/447 (5%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 + VA + P+ ++ + TL V L + + E Sbjct: 148 MSFLPAAVAQVVLANITLPVLLVYPVATLLVCQLFLQMEHHISVEQELEQER-------- 199 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 L + L+ Y Y + +A L + + V Sbjct: 200 --NKLDSLIQAVPDLLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVR-EMLPPRAAEV 256 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + Q + + + + ++ V+ I++ + Sbjct: 257 CLEALQEAEATGHSHGRQFFLPLPSGEIWFELSVARKTGPVEDQPRFVVLSRDISDRKQH 316 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E R AE + AKS FLA+MSHE+RTP+N ++G + ++ + P ++Y+ Sbjct: 317 EKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTELSP----EQEQYL 372 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +I S L+ LI +ILDLSRIEAGR L SL ++E + Q + +K I I Sbjct: 373 ENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQINQKKISIH 432 Query: 352 QKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 +I + + D+ RQ++LNLL NA+KFT GG V +T + ++++ Sbjct: 433 TEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGG-VTITAQLVTSEENRVLIHLAVS 491 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G+ + + F Q + G GLGL I + + GG+ S G Sbjct: 492 DTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAESGAEGGS 551 Query: 467 EVIAILPNTRVLNFIPEDNHESTQYKC 493 LP +PE + C Sbjct: 552 TFHVELPF-----LLPEQTDRQQERNC 573 >gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 601 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 91/436 (20%), Positives = 172/436 (39%), Gaps = 20/436 (4%) Query: 45 LFRVSPILPLFVLLVANIGTWFT--QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102 R L A + + +S+ + + L L +V ++ Sbjct: 24 RTRYGGFFYLLAFWAAVFSSALARDHLVLIGFFSVCFILLQIYRLVLYFQVYSAQHLDFL 83 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 Y + + A + L +TI ++ I++ + Sbjct: 84 AYSAKYAFVYNASASVWVSSSAWLFYINPVVDLAVTINMLSSAGISIGGITVLAPAYKIM 143 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + ++ +AG++ F ++ + L + Sbjct: 144 RSYWLLICWPYALASVLFISEPGNLIIAGLILGYGLFIFVTGKQQNRTYWQAL------N 197 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D + E A + ++ AE AK+ FLA+M+HE+RTP+N +LG ++++ + + Sbjct: 198 DNLKLSEQA-EELERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLLAMGDL--- 253 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE K+ + I+ +G+ L+++IN ILD S+I A + L + ++V E ++L + Sbjct: 254 -NEKQKQQVTVINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEVKLLLAPQ 312 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 ++K I + I+ S V D + Q++ NL+ NA KFT G + + V Sbjct: 313 FEKKPITLKSSIENIPSFVLGDPFRLHQILYNLVGNAFKFTEK-GEISIEVSSKESDAEN 371 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S+KD G GI+ + + F Q S +G GLGL I Q ++ GG Sbjct: 372 TVILSFSVKDTGIGISPEDQEQIFEQFYQVSH-FDPNIRGTGLGLSITQRLVELMGGTIS 430 Query: 458 IRSKLREGVEVIAILP 473 + S++ G +P Sbjct: 431 LTSEIGVGSRFTVDIP 446 >gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 725 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 2/256 (0%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I E++ ++ + + AE N +KS FL++MSHELRTPLNA++GF++++ E Sbjct: 467 ESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEEGF 526 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 GPL N+ K ++G+I SG+HLL LINEILDLS+IEAG+ E + S+ + E +L Sbjct: 527 GPL-NKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDIL 585 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +K I I +I ++++++DE QV+ NL+SNA+KFT GG V V+ +G Sbjct: 586 FPVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKVSA-RKNGD 644 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S+KD G GI E ++ + F Q +G GLGL + ++ GG+ + Sbjct: 645 MLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQLMGGEICVF 704 Query: 460 SKLREGVEVIAILPNT 475 S+ G E I ++P Sbjct: 705 SQPGIGSEFICMIPLK 720 >gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] Length = 1272 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + A+ E ++ AE AKS FLA+MSHE+RTPLNAI+GF++++ + Sbjct: 768 MSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS----FPS 823 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ I SG++LL LIN+ILDLS+IEAG+ LS S + L + E + + + + Sbjct: 824 GKEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 883 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398 K + P+L +V DE +RQV+ NL+ NA+KFT G V V V S Sbjct: 884 HKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQ-GHVKVQVRGSLHTEESK 942 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 IS++D G GI E + SF Q S G GLGL I++ ++ GG + Sbjct: 943 VDLTISVEDTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISV 1002 Query: 459 RSKLREGVEVIAILP 473 S+ +G +P Sbjct: 1003 ESEYGKGTTFTVNIP 1017 >gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake] gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ehrlichia canis str. Jake] Length = 470 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 1/263 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + ++++ A E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+++ E+ Sbjct: 205 YKNTKILSKQYDANLKLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSES 264 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 MG ++N YKEYI DIH SG HLL+LIN+ILD S++EA + + L I+ C M Sbjct: 265 MGAIDNVHYKEYINDIHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNM 324 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397 + RA++ +++ + + + + AD K M+QVI+NLLSNA+KFT G V + V + Sbjct: 325 MVPRAEQAKVKLEKVLPSNKVIMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIE 384 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + I + DNG GIA+ ++ V++ FGQ +G GLGLP+++ ++ G F Sbjct: 385 EKLIDIEVIDNGIGIAQQDLYKVMSIFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFK 444 Query: 458 IRSKLREGVEVIAILPNTRVLNF 480 I+S+ G V P T L Sbjct: 445 IKSEPNLGTIVTLTFPYTDTLEE 467 >gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 641 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 153/325 (47%), Gaps = 7/325 (2%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + + + V+L I+ + ++ + + + Sbjct: 311 IRDQTFVVGLIGLLIALTVSLLLNRIIIKPLDELKHGVQWISGGDYTKKVNVTTDDEFGM 370 Query: 214 ILSCQAE-KDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILG 269 + E D + + E K ++E ++ +E + KS +A +SHELRTPL +I G Sbjct: 371 LARVFNEMADQINSSNEKLKKHAEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKG 430 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + E++ TMG + NE+ ++ + + L LI +LDLS+IE G E+ A+++ Sbjct: 431 YVELVLDGTMGTI-NESQRKCLQVADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVK 489 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 D V + I L A EKNI++ Q I L + AD+ + QV NL+ NA+KF+ + Sbjct: 490 DTVSDVIEYLTPLATEKNIKLKQDIKDLL--INADKDRITQVFTNLIENAIKFSPANESI 547 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + T +I++KDNG GI + ++ + F Q + K + G GLGL + +SI+ Sbjct: 548 MIIGKETENGDVHITVKDNGAGIPKKDLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSII 607 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG + S+L G +LP Sbjct: 608 QAHGGTIWVESELGRGSTFHIVLPA 632 >gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 3/276 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ ++ +L A +D + + + E E N AK RFLASMSH Sbjct: 96 FPVEISLSPLRTPEGLLVTSAIRD--TTDRKRIERSLQEKNAELERANQAKDRFLASMSH 153 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN I+GF+E + GP+ N KEY+ DI G+HLL+LIN++LDL +++AG+ Sbjct: 154 ELRTPLNGIIGFAEFLADGKPGPV-NGKQKEYLEDILNGGRHLLHLINDMLDLVKVQAGK 212 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 EL + + D + E ++ A K I + +I P S + DE+ +QV+ NLLSN Sbjct: 213 LELHLATFRIEDAIEEVCAGVRPLADNKRIGVHVEIAPGFSPITHDEQRFKQVLYNLLSN 272 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GG+V V V +S++D G GI +I + F Q G Sbjct: 273 AIKFTDDGGQVEVKVEQRGADRFCLSVRDTGIGIKPEDIQRLFVEFEQLETGHARRFGGT 332 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL + + I+ GG + S + G LP Sbjct: 333 GLGLALTRKIVELKGGTISVESAVGRGSTFSVTLPL 368 >gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] Length = 1455 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 26/314 (8%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + K+L+ A + + E + RAE+ N AKS FL+++SHELRTP Sbjct: 942 ASRFTQEDKKLLTTIAINVGVALHNADLYEQAREAKARAEDANEAKSAFLSTVSHELRTP 1001 Query: 264 LNAILGFSEVIE----LETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILD 310 L ++LGF+++I + + + K E + + G+ L LIN++LD Sbjct: 1002 LTSVLGFAKIIRKRLTEKIFPAVTVDDQKIKRTMKQVSENLDVVVSEGERLTTLINDVLD 1061 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 L++IE+GR + + I L D++ + +EK +++ + + L + DE + Q Sbjct: 1062 LAKIESGRMDWNMKPIFLQDVIGRAVSATSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQ 1121 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V++NLLSNAVKFT G V + + + ++D G GIAE + + F Q Sbjct: 1122 VVINLLSNAVKFTKK-GSVTIDAYREENQ-LIVEVQDTGIGIAEEDKHKIFERFRQAGDT 1179 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP-----------NTRVLN 479 + QG GLGLPI + I+ +HGG ++S+ G +P R+L Sbjct: 1180 LTDKPQGTGLGLPICREIIEHHGGIIWMKSEPGVGSTFFFSIPMMGEGSDQPIQLERILK 1239 Query: 480 FIPEDNHESTQYKC 493 + + S+Q K Sbjct: 1240 SLKKQIKHSSQVKS 1253 >gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 864 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 169/305 (55%), Gaps = 5/305 (1%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRAEE 244 +L G + T I S QA D L + L+ + + RAE+ Sbjct: 552 TLEGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQTDLAKKYEMAKIRAEQ 611 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N AKS FLA+MSHELRTPLNAI GFSE++ E GPL + YKEY GDI SGQHLL L Sbjct: 612 ANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDILSSGQHLLAL 671 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN+ILD+S+IEAG+ L +S+ ++V + + +++ RA++ +++ + P L + AD Sbjct: 672 INDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHL-PQLPDIQAD 730 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + ++Q++LN+L+NA+KFT GG + V+ T ++ + D G GIA ++ + F Sbjct: 731 YRALKQILLNILTNAIKFTPSGGTITVSAVPT-DSFMHLYVADTGIGIAPKDMERLARPF 789 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q ++G GLGL + +S++ H G+ + S + +G V ILP T+ D Sbjct: 790 EQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILPLTQTSPGASAD 849 Query: 485 NHEST 489 + T Sbjct: 850 DTPDT 854 >gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1545 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 136/256 (53%), Gaps = 9/256 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL++ ++ E R+RA + AKS FLA+MSHE+RTP+N +LG +E++ + P Sbjct: 969 ITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDP--- 1025 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I +SG LL +IN+ILD S+I+AG+ L + +L + + + ++ RA+ Sbjct: 1026 -KQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 1084 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR-GQ 401 EK++E+ +++P L S+ D +RQ++ NLL NAVKFT G V VT Sbjct: 1085 EKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKL 1144 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 IS+ D G GI E ++ V F Q + +G GLGL I ++ GG + S Sbjct: 1145 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESA 1204 Query: 462 LREGVEVI--AILPNT 475 +G LP Sbjct: 1205 EGKGSTFWFSVTLPRA 1220 >gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1410 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 12/251 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + +++AE + KS+FLA+MSHE+RTP+NAI+GF+E++ + Sbjct: 900 LTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQV----TE 955 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K YI I +G+ LL LIN+ILDLS+IEAG+ +L + A++ + E + + Q Sbjct: 956 PRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINIQ 1015 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K ++ ID +L + D +RQ++ NLL NAVKFT G V + V Sbjct: 1016 RKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQ-GYVKLKVSACDVDEHHS 1074 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D G GI E + + +F Q G GLGL I Q ++ GG Sbjct: 1075 KLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIW 1134 Query: 458 IRSKLREGVEV 468 + S +G Sbjct: 1135 VESTPGQGTTF 1145 >gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina mazei Go1] Length = 716 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 A + ++ AE N KS FLA+MSHELRTPLN+I+GFS+++ + G L NE Sbjct: 466 ERKAIEKLLQEKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYGKL-NEKQ 524 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y +I +SG+HLLNLIN+ILDLS++EAG+ EL L D + +L A KN Sbjct: 525 LKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSPIAARKN 584 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I+I ++ L+++ ADE Q++ NL+ NA+KF+ V + G ++ D Sbjct: 585 IKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARR-KGEFLETTVTD 643 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + F Q + QG GLGL + + I+ HGG RS EG Sbjct: 644 IGIGIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRSIPGEGST 703 Query: 468 VIAILP 473 +P Sbjct: 704 FAFAIP 709 >gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102] gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] Length = 574 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 11/317 (3%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDDL 224 V +A S + + + + + +I + L Sbjct: 254 LVSVAIAAIVAWRTSRAIAEPVITVTQVAEQVARKHNFDLRAPVTTEDEIGLLAKSLNRL 313 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ AE + AKS FLA++SHELRTPLNA++G S+++E + + Sbjct: 314 IERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLS 373 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I+ +G+HLL+LINEILDLS+IEAG+ L + ++ ++ ++ + Sbjct: 374 ADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVKPAIE 433 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------ 398 + + D L +++AD+ MRQV+LNLLSNA KFT G+V +TV Sbjct: 434 KNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFT-TNGKVTLTVKREKEELRLDA 492 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G G++ + + F QG + G GLGL I++ GG+ Sbjct: 493 PLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEI 552 Query: 457 LIRSKLREGVEVIAILP 473 +++S+ G LP Sbjct: 553 IVKSQPGLGSTFTIRLP 569 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++RAE AKS FLA+MSHE+RTP+NA++GF+ ++ + + Sbjct: 690 LTERKKVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSV-- 747 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++YI IH SG LL +I++ILD S+IE G EL + I LI+ + + ++ A Sbjct: 748 --QRDYIETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDAS 805 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400 K + + +++P + + D +RQ+++NLL NAVKFT G V + V G Sbjct: 806 RKGLSVSYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDK-GFVRLDVSALPVEDGHE 864 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D+G GI++ + + SF Q + G GLGL I + + GG S Sbjct: 865 IQFRVTDSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAES 924 Query: 461 KLREGVEVIAILPNTRVLNFIPE 483 EG + + P+ Sbjct: 925 VPGEGSSFYFTIQAEASIEPYPK 947 >gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] Length = 558 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554 >gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii] gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 949 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 1/300 (0%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 ++ + +L L + ++ L A + + Sbjct: 507 VIGSLSVDRTHNQALTQDDLDVLVTLASQVAIALDNAQAYREIESLNAGLEARVRERTAE 566 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + + ++ + KS+FLA +SHELRTPL +I+GF++ + +G L N ++Y+ I Sbjct: 567 LEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSL-NMKQEQYLTRI 625 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G L +I ++LDLSR+EAG+ LS + L +V + + L A K++ I + Sbjct: 626 KANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQS 685 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 VWAD+ + Q++ NLL NA+K+T GG+V V + + I I+DNG GI Sbjct: 686 PDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPS 745 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +P + F + +S +G+GLGL I + ++ HGG +RS++ +G E LP Sbjct: 746 DALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEFTFTLPL 805 >gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 646 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 9/324 (2%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 +L +F +V + + + + + + ++ Sbjct: 150 FALLLVGESIKTFLLMVGVIYIALSLIVKPISLLSRAVSDFKDGETPSRLRLPARAFDDE 209 Query: 215 LSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +S AEK + I L + +++AE N+ KS FLA+MSHE+RTP+N I+G + + Sbjct: 210 ISLLAEKYNSSIERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASL 269 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ + K+Y+ I+ S + LL++IN+ILD S+IEAG+ +S L D+V Sbjct: 270 LKEMDLSS----EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVE 325 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + L+A KN++ ++ + + D K ++QV+ NLL NAVKFT G V Sbjct: 326 QMCAIYTLKAHAKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVV 385 Query: 393 VGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + D+G GIA+ + V F Q + G GLGL I + ++ Sbjct: 386 AKELDAQHIPHIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLV 445 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 + GG+ ++S++ G +P Sbjct: 446 SLMGGELELKSEVGLGSCFEFSVP 469 >gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1426 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 130/271 (47%), Gaps = 14/271 (5%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++ +EL + + ++ AE N AKS F+A MSHE+RTP+N ++G Sbjct: 743 ALAQAQLLEQERKQRSELALKNIALEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGM 802 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ + +E ++ + I SG LL +IN+ILD S+IE+G+ EL E +L + Sbjct: 803 TGILLDTPL----SELQRDCVETIRNSGDALLMIINDILDFSKIESGKLELEEQPFNLRE 858 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + +L +A EK +E+ DP+ + D +RQ+++NL+ N +KFT G V Sbjct: 859 SIESSLDLLAPKAAEKGLELAYIFDPNTPETILGDVTRLRQILVNLIGNGIKFTEK-GEV 917 Query: 390 HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V V ++ D G GIA + +F Q + G GLG Sbjct: 918 VVNVSSYPQEKSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLG 977 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I++ + GG+ + S+ +G + Sbjct: 978 LVISKRLTQLMGGEISVDSQQGKGSTFKFTI 1008 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 2/333 (0%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + + + ++ + + S + + V Sbjct: 757 MISELRLALTTAFATGELQTVAYKLLFSGQERFFEARIKAIPTGDEAIVLVRDITAWRVA 816 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L QAE+D L + + K FLA+MSHELRTPLN IL SE Sbjct: 817 ELQLQAERDLLAQRVAERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSES 876 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + E GPL NE + I I SG+HLL LIN++LD+++IEAGR EL + +++ D+ Sbjct: 877 LLEELRGPL-NERQRASIQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCE 935 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++++ +A +K I + ID + AD + ++Q+++NLLSNAVKFT GG V + V Sbjct: 936 SSLVLIKEQAAKKQIRLHCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRV 995 Query: 394 GW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 T+ ++ D G GIA ++P + F Q ++ +G GLGL + + ++ H Sbjct: 996 TTDTAQGTIAFAVSDTGIGIAPDQLPRLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLH 1055 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GG + S G LP + +P Sbjct: 1056 GGSVSVTSTPGSGSVFTVTLPYQPLQYAVPNPA 1088 >gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 850 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 9/256 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + +++++ AE N AKS+FLA+MSHE+RTPLN ++G ++ T+ N Sbjct: 345 ISEHKSMMEELNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDL----TLMSDLN 400 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + LL LINEILD S+IEAG+ EL S+ L D++ + + +++A+ Sbjct: 401 NEQRDNLETAKSCVDSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAK 460 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 E N+ + I L + D+ ++QV+ NLLSNA+KFT G +++ V + Sbjct: 461 EHNVMVDYSISSDLPEYIIGDQLRIKQVLNNLLSNALKFTEA-GSINLKVDINTIDNDEF 519 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA+ ++ + SF Q + G GLGL I++ ++ GG I+S Sbjct: 520 ILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKS 579 Query: 461 KLREGVEVIAILPNTR 476 + G + R Sbjct: 580 EKGIGSTFSFTIKLER 595 >gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 558 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554 >gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 1070 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 10/256 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ +++A+ N AKS FLASMSHELRTPLNAILGF++V++ Sbjct: 577 RDITERKQAEEALKRAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQR---DHS 633 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +K+ + I RSG+HLL LIN+IL++++IEAGR L+++ L ++ ML L+ Sbjct: 634 LKEEHKQNLDIIGRSGEHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLK 693 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400 A+EKN+++ + +P L + DE +RQV++NLL NA+KFT GG + + S Sbjct: 694 AEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTSQQSPNN 753 Query: 401 QYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 Q I ++D GPGIA E+ + +FGQ S +G GLGLPI++ + GG+ Sbjct: 754 QAIILTFEVEDTGPGIAIEEVDQLFEAFGQTETGRNSN-EGTGLGLPISRKFVELMGGEI 812 Query: 457 LIRSKLREGVEVIAIL 472 + S L G + Sbjct: 813 SVSSILGRGSLFTFTI 828 >gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel] gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel] Length = 469 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 2/338 (0%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 A L S L + V F V + + LA L+ A Sbjct: 124 LSGAQLATLTSGGVLRGAVADGRVSAIFPVVSQDGGPTVFLQVVKDCKKLARALSRAHGM 183 Query: 200 FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F S V ++ K L++ A E ++ AE E+++KS+FLA++SH Sbjct: 184 FVIPIGATMISCVCLVVLFYRKSAKLLSSQYDANLELQEQKETAERESVSKSQFLANVSH 243 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LIN+ILD S+ EA + Sbjct: 244 ELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYISDIHQSGVHLLSLINDILDFSKAEANK 303 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + L IV M+ RA++ +E+ +++ + AD K M+QVI+N+LSN Sbjct: 304 LTVEFVKFDLSKIVDSSFTMVLPRAKDAKVELKKEMPEEPVVMLADPKRMKQVIINILSN 363 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 +VKFT GG V + G + I D G GIA+ ++ V++ FGQ +G Sbjct: 364 SVKFTPEGGLVKL-CTEIRGEQLVVEISDTGIGIAQQDLYKVMSVFGQADSKHSRKYEGT 422 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGLP+++ ++ G F I+S+ G V P+ + Sbjct: 423 GLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLTFPHKQ 460 >gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 923 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 11/263 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 EL++ + + AE + +KS F+A++SHE+RTP+NAI+G +++ + Sbjct: 255 ELKIINRELEIAKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSS----K 310 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +E+I I SG+ LL LIN+ILD S+IEAG+ L E +L ++ + + + Sbjct: 311 QREFIKIIISSGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVAS 370 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQ 401 E+ I P + + D +RQV++N+ +NA KFT+ G + +TV Sbjct: 371 QTELVIDIRPGVPQRIIGDPLRLRQVLVNITANAFKFTSK-GEIIITVSADQINATKTEI 429 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +IKD G GI E P + +F Q + G GLGL I++ I+ GG RS+ Sbjct: 430 VFAIKDTGIGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSR 489 Query: 462 LREGVEVIAIL-PNTRVLNFIPE 483 +G + PN V + E Sbjct: 490 PEDGSTFFFTITPNVAVETSLIE 512 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 10/294 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 T ++ + + AE + + ++ R +AE AKS FLA+MSHE Sbjct: 517 CVRETREWTRAEIDLFVLLAELLVNARHRKSREEELNQARLQAEHATRAKSEFLANMSHE 576 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLN ++G S ++ + + + + S Q LLNLIN+ILDLS+IEA R Sbjct: 577 IRTPLNGVIGMSGLLLDTELDS----QQRSFAETLKTSAQTLLNLINDILDLSKIEADRL 632 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 +L +L V++ +L +A EK +++ I P + + DE + QV++NLL N Sbjct: 633 QLETKGFNLETTVKDSAGILNYQAMEKGLKLGYVIHPGVHHCLLGDEGRLSQVLVNLLGN 692 Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 A+KFT+ G+V + V + D G GI E + + T F Q + ++ + Sbjct: 693 AIKFTSQ-GQVDLEVSPVQEEADHVRLLFEVHDTGIGIPEEKQDQLFTPFHQLNTSVTRS 751 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL I +S++ GG+ ++S G + + ++ E Sbjct: 752 FGGTGLGLAICKSLVQMMGGEIGVKSSKGRGSTFWFTAGFEKDPAPLDKEAQEK 805 >gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 456 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 31/408 (7%) Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTI 139 + + + + +I G W L Sbjct: 70 GMGCLEVGNDGDFELAASDPPSCRAALQAEIDAKIMDGTFAWAL---------NRNQAIT 120 Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 SA L + ++ +F + P +A ++ A + Sbjct: 121 VPSADGEYTLLLHVIATRSEVQGMFAALLPAEIATMDVPSLN--------ALSIVLYTCA 172 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + L + L + S R+ AE NLAKS FLA+MSHE Sbjct: 173 YALESATLHAM------LRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHE 226 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNA++GF++V+ G + + E++G + +S +HLL+LIN+ILDLS+IEA R Sbjct: 227 LRTPLNAVIGFTDVLLSRIYGEVTD-IQAEFLGYVLQSSRHLLSLINDILDLSKIEADRM 285 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSN 378 EL S + + + ++M++ RAQ+ I + +++ P+ ++ ADE+ ++Q++ NLL+N Sbjct: 286 ELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVAPAVPPTITADERKLKQIVFNLLAN 345 Query: 379 AVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 AVKFT GG V ++VG G I+++D G G+A G++ + F Q + Sbjct: 346 AVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGIGLAAGDLERIFDPFVQADGSATRR 405 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481 +G GLGLP+ + ++ HGG S G I+P + Sbjct: 406 YEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFRVIIPPSPPPTHS 453 >gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 617 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 154/279 (55%), Gaps = 7/279 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 I + +++ + E + ++ + ++++ E + AKS F++ +S Sbjct: 346 PSIIRIETSIGIRELEVRKLEPENPNDNQKIITMRDVTEQ-----RELDRAKSNFISMVS 400 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++LGF+ VI GPL++ +E++ I S +HL+ L+++ILDLSR++AG Sbjct: 401 HELRTPLNSVLGFANVILSGATGPLSD-RQREFLEYIQASSRHLVQLVSDILDLSRMDAG 459 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + L +S + I ++ + L A E+NIE+ D + + AD + + QV++NL+ Sbjct: 460 TFTLHKSKVLPEIIAKQVVSQLSGLAAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVG 519 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GG+V V V G S+ D GPGI+E ++ + F Q + ++A +G Sbjct: 520 NAIKFTPPGGKVIVRV-RNQGDHVLFSVSDTGPGISEEDMDRIFERFYQPIMNPQAATKG 578 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL IA+S++ HGG+ + S +G LP Sbjct: 579 TGLGLAIAKSLVEQHGGKIWVDSTPGQGATFYFTLPIKP 617 >gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 1090 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 17/344 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK- 213 + F + ++ L + +I+ + + Sbjct: 478 MALTVHPEYADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDGRYHWISTQIINVDNPY 537 Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + D+ E E + A N AK +FL++MSH++RTP+NAI+ Sbjct: 538 SNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAII 597 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G S + + E E +G I+ SG+HLL+LIN+ILD+S+IE+G+ L + +L Sbjct: 598 GMSAIASAHL---DDRERIMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNL 654 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + + +++ +A + I + + +V D +RQV +N+LSNAVK+T GG Sbjct: 655 AELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCINILSNAVKYTPEGG 714 Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 ++ + V + D G G+ + + F + S + S G GLG+ Sbjct: 715 KIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGM 774 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I ++I+ G + S +G LP L + +D Sbjct: 775 AITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK--LQDVSQDET 816 >gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1146 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 175/387 (45%), Gaps = 5/387 (1%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 +LV G +L + + +++ L+ ++I+ + +F Sbjct: 349 ILVPFSYNGKLKGVLEIGFTEEISESSKDFIVNSSQLLGVAINTAESRETLKVLFEQTQQ 408 Query: 170 VVVALSTQAIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 L +Q + L +L + L + N+++ ++ + Sbjct: 409 QAEELESQQEELRVSNEELLSKTELLQASEEELRVQQEELRQINIELEEKAKVLENSNMQ 468 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E AK+ + E+ + KS FLA+MSHELRTPLN+IL +++++ G L+ + Sbjct: 469 IESAKNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDET 528 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 K Y IHR+G LL+LIN+ILDLS+IE+G EL+ +S+ D+ + + A K Sbjct: 529 K-YASVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTKG 587 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + DP L ++ D + Q++ NLLSNA KFT+ G V V + S+K Sbjct: 588 VNFVIERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTVSVHMS-EKDDFLRFSVK 646 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E + + +F Q + G GLGL I++ + G ++S++ +G Sbjct: 647 DTGIGIPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKGS 706 Query: 467 EVIAILPNTRVLNFIPEDNHESTQYKC 493 E +P ++ + Q K Sbjct: 707 EFTLNIPTKELVKKDSGETDAVEQVKS 733 >gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1198 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 169/391 (43%), Gaps = 7/391 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R + V G ++ + +T L +++ I + I N Sbjct: 387 RNVVAVPVFRNGEVIGVIEIGSLNCYTSLQLEFFQNIGANIGIGIHVAQNRKKLQDFLEE 446 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + A + T+ L +SN ++ ++ Sbjct: 447 TQAQAEELQAQHTELEGLNAELEAQSQKIQTSEEELRVQQEELLQSNQELEERTTLLEEK 506 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + ++ E+ KS FLA+MSHELRTPLN+IL S+++ + Sbjct: 507 NQLIQERNQDIQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSEN---KDLD 563 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y EY I SGQ LL LI+EILDLS+IEAG+ +L +++++ ++ + M A+ Sbjct: 564 KEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAK 623 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 K ++ +++ + V D+ + Q++ NLLSNA+KFT G+V +TV Sbjct: 624 NKQLQFAVEVEERIPEVETDKMRLEQILKNLLSNAIKFTTQ-GKVSLTVKKDDSGKFVQF 682 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA + + +F Q + + G GLGL I++ + GG+ + SK Sbjct: 683 TVTDTGIGIATDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKEN 742 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G LP RV + E + Y Sbjct: 743 VGSSFTFSLPVRRVDVIEADVEKEISSKITY 773 >gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1599 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 136/262 (51%), Gaps = 12/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ELE A+ + +++AE N AKS FLA+MSHE+RTPL I+G E++ E ++ Sbjct: 1031 ISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEI----SS 1086 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + S + L +I++ILDLS++EAGR ELS L ++ + +A+ Sbjct: 1087 ENGRRIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQAE 1146 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 KN+ + + +DP + + D + Q++ NL+ NAVKFT G+V + + Sbjct: 1147 NKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFT-SHGQVTLRARPADSQDGSS 1205 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++D GPGI E ++ + SF Q + K + QG GLGL I + + GG Sbjct: 1206 KQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNIN 1265 Query: 458 IRSKLREGVEVIAILPNTRVLN 479 + S EG +A +P V Sbjct: 1266 VESAPGEGSTFVAEIPFEVVGQ 1287 >gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 827 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 14/350 (4%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L+ + + AL + Y + P+ + + + + S + + + Sbjct: 341 LVSSSASFALIALIFFYVHYHIINPLSQLTSAIRRLASKDLTIEIPSVESDNEIGELAAS 400 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++I + L +L + L R A+ N KS FLA+MSHE+R P Sbjct: 401 VHVFRNMALQIDNDMLTMQHLQNKLHESLELLTTARNAADAANQNKSEFLANMSHEIRNP 460 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ++G +++ + + K+Y+ I S LL +IN+ILDLS+IEAG+ EL Sbjct: 461 MNGVIGMLQLLRFTEL----TDEQKDYLSAIETSADDLLAIINDILDLSKIEAGKIELEI 516 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 S SL + + ++M RA EK +++ ++D L V+ D+ ++QV+LNLL NAVKF Sbjct: 517 SRFSLRRCINDVLLMQTSRAFEKGVQVEARLDEQLPLEVYGDQLRVKQVLLNLLGNAVKF 576 Query: 383 TAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + + I++ D G G++ + V F Q + G Sbjct: 577 TEE-GTISIEARLLQKQDDNSIVQITVSDTGIGMSPEVLGKVFDPFIQADVCTTRRFGGT 635 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---RVLNFIPEDN 485 GLGL I + + GG+ S+ +G + LP +V+ P + Sbjct: 636 GLGLTICRQLAELMGGRISATSEEGKGSQFYLELPFRLSTQVVEAEPAAS 685 >gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 773 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 112/272 (41%), Positives = 152/272 (55%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E ++RAE N AKS FLA+MSHELRTPL Sbjct: 503 RRLFSFIQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ L Sbjct: 563 NAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFTLDCK 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 L I+ E + L +AQEKNI + I P L D + M+Q+ LNL+SNAVKFT Sbjct: 623 NTDLEPIISEAVRTLTPQAQEKNIAVTTNITPKL-HAEVDGRAMKQIFLNLISNAVKFTP 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + V + I D G GI + I + F Q + + G GLGL I Sbjct: 682 SGGNIDV-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V I+P T+ Sbjct: 741 SRSLLELHKGKLEITSKEMKGTTVTIIMPITQ 772 >gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Virginia] Length = 442 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 L + A+ + ++ + ++LS Q + A E ++ AE E Sbjct: 154 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 203 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI Sbjct: 204 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 263 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILD S+ EA + + L IV M+ RA++ +E+ +++ + AD Sbjct: 264 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 323 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 K M+QVI+N+LSN+VKFT GG V + G + I D G GIA+ ++ V++ FG Sbjct: 324 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 382 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q +G GLGLP+++ ++ G F I+S+ G V P+ + Sbjct: 383 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 433 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I+ + + R+ AE ++AKS FLA+MSHE+RTP+N I+G S ++ E + Sbjct: 474 EDISRRKAVEKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDL--- 530 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++ + IHRS L+ +IN+ILD S++EAGR+EL + SL +++ E I ++ Sbjct: 531 -PDLQRQQLELIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPT 589 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 AQ KN+ + + P++ + D+ + QV+ NL+ N++KFT G++ +TV Sbjct: 590 AQRKNLRLHLIVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFTRK-GQITLTVSNQPSPNS 648 Query: 398 ---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G + D G GIA V SF Q + G GLGL I++ ++ GG Sbjct: 649 FANGDMLLFEVADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGG 708 Query: 455 QFLIRSKLREGVEVIAILP 473 + S+L +G LP Sbjct: 709 RIWFESELAKGTRFSFTLP 727 >gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908] gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 937 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD + G L Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239 Query: 195 TALSFFTYITYHLFKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + S I ++ + + ++E+ D +KRA E + Sbjct: 240 GELDLLKRGINAMASSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I +S +LL +IN Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHT----SQQDYINTIEKSATNLLEIIN 355 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +L ++V + + +L A+EK+IE+ ID S+ + D Sbjct: 356 DILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVIDIDQSVPEALCGDP 415 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 + Q++ NL+ NA+KFT G VH+++ T G + I D G GI + + Sbjct: 416 MRIGQILTNLIGNAIKFTDS-GSVHLSLKLTDGSKDKVNIRCEITDTGIGIDPQQQEILF 474 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +FGQ +I G GLGL I + ++ GGQ SK EG LP Sbjct: 475 QAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTFWFTLPLE 528 >gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 773 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 109/272 (40%), Positives = 149/272 (54%), Gaps = 2/272 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF ++ + E+E ++RAE N AKS FLA+MSHELRTPL Sbjct: 503 RRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ T GPL ++ YKEY+ DI+ SG HLL LIN+ILD+S+IEAGR+ + Sbjct: 563 NAILGFSDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTLINDILDMSKIEAGRFTVDCK 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L I+ E + L +AQEKNI + I L D + ++Q+ LNL+SNAVKFT Sbjct: 623 NIDLEPIISEALRTLIPQAQEKNIFVTTNIATKL-HAEVDGRAIKQIFLNLISNAVKFTP 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + V IKD G GI + I + F Q + G GLGL I Sbjct: 682 SGGNIDV-CALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFEQVENQLTKTYTGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++S++ H G+ I SK +G V +P + Sbjct: 741 SRSLLELHKGKLEIISKEMKGTTVTITIPIKQ 772 >gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] Length = 474 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 L + A+ + ++ + ++LS Q + A E ++ AE E Sbjct: 186 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 235 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI Sbjct: 236 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 295 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILD S+ EA + + L IV M+ RA++ +E+ +++ + AD Sbjct: 296 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 355 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 K M+QVI+N+LSN+VKFT GG V + G + I D G GIA+ ++ V++ FG Sbjct: 356 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 414 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q +G GLGLP+++ ++ G F I+S+ G V P+ + Sbjct: 415 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 465 >gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 827 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 149/319 (46%), Gaps = 7/319 (2%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 V+ L++ + + L + NV A ++L ++E Sbjct: 249 VLSPLASVTESARRIAHDRRYLGEQIPLGRDREMNELAASFNVMSTELHAFINNLEEKVE 308 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + R+ AEE N K FLA+MSHE+RTP+NAI+G +++++ + ++ + Sbjct: 309 EKTAELVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHL----SQQQRR 364 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + D + + LL +IN+ILD SR+EA R ELS+ A+ L V + ++A+ +NI Sbjct: 365 LVDDSSNAAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENIS 424 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407 + + + D +RQV+ NLLSNA+KFT GGRV + +G ++ D Sbjct: 425 LSILVGDEAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSD 484 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q + G GLGL I + ++ GG + S+ +G Sbjct: 485 TGIGIEKDKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAV 544 Query: 468 VIAILPNTRVLNFIPEDNH 486 +LP R P D Sbjct: 545 FRVLLPL-RPATGPPADKT 562 >gi|113474406|ref|YP_720467.1| periplasmic sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165454|gb|ABG49994.1| periplasmic sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 569 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 29/338 (8%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + + V++A+ T + + I+ T + F +N +I Sbjct: 239 LLLSAITTVIIAIYTTNSIITPLKVITKVAEEVTEQANFEL--QLPVTTNDEIGELTESL 296 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++LI+++ E + +AE N +KS FLA+MSHELRTPLNAI+G+S+++ + + Sbjct: 297 NELISKVAEYTEQLQEAKLKAEAANRSKSAFLATMSHELRTPLNAIIGYSDILYEDVLEG 356 Query: 282 LNNETYKEYIGDIHR---SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 YK++I DI R +G++LL +I++ILD+S+IEAG+ L +I + +V++ Sbjct: 357 G----YKDFIPDIERIKLAGKNLLEMISDILDISKIEAGQVTLYLESIEVNKLVKDVFST 412 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-- 396 + ++ + + +L S++AD ++QV++NLLSNA KFT G + ++V Sbjct: 413 AKNITEKNRNKFELVLGENLGSMYADMPKVKQVLINLLSNAAKFT-EDGTITLSVEKVKN 471 Query: 397 ----------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 + D G GI E ++ + F Q + G GL Sbjct: 472 NQQKNNQNHNAKSLSNENYHIVFRVIDTGIGITEEQLKHIFQPFTQADTSTTRKYGGTGL 531 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 GL I + + G + ++S+L +G P +VL Sbjct: 532 GLAICKRLCERMGAEITVKSQLGKGSTFTVWFP-EKVL 568 >gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 7/237 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R++ E ++ F+A++SHELRTPL +I GF E + + + +T + ++ ++ Sbjct: 222 ERRKLE---RMRTEFVANVSHELRTPLTSINGFLETLLDGAI--EDPKTARHFLEIMNAE 276 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L NLI+++L LSR+E + L++ + L D++ I M + RA+EK I++F + Sbjct: 277 TKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPDK 336 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V D + QV++NL+ NA+K+T G+V V V + + + D G GI + ++ Sbjct: 337 LPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREK-VRVYVADTGIGIPQEDL 395 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 P + F + A G GLGL I + I+ HGGQ + S G LP Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFSFTLPL 451 >gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 137/268 (51%), Gaps = 8/268 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + E D + + V +++E ++ E +S F+A++SHELRTPL +I GF Sbjct: 187 IHVTPLKDEHDQKVGLVAVFDDITEE--RKLE---KMRSEFIANVSHELRTPLTSIKGFL 241 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E + + + K ++ ++ + L LI+++L LS+IEA + + + + L ++ Sbjct: 242 ETLLDGAL--EDKTIAKHFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQEL 299 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +++ ++ + R +EK + + +L V AD + QV++NL+ NA+K+T GG++ V Sbjct: 300 IQKMKLLFKSRLEEKELSFIISLPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEV 359 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 T G + +KD G GI E + F + A G GLGL I + I+ Sbjct: 360 TAA-VKGSWVEVVVKDTGIGIPEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIEL 418 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479 H G+ ++SK+ EG +P + + Sbjct: 419 HNGKVWVKSKVGEGSAFGFTIPIAQTVQ 446 >gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] Length = 545 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 541 >gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9] Length = 927 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LL L++S+L + L V P+ +S + LDI + G L L Sbjct: 174 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 230 Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + ++ + + I ++ + + +LE+ D +KRA+E K Sbjct: 231 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 290 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN+IL Sbjct: 291 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 346 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L + + E + +L A EK +E+ K+D + + + D + Sbjct: 347 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRI 406 Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +QV+ NL+ NAVKFT G V + +++D G GI+E + + +F Sbjct: 407 QQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFS 466 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG+ + S+L +G L Sbjct: 467 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 513 >gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 738 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 8/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I++ + A+ +++AE + AKS FLA+MSHE+R+P+N I+G ++++E + Sbjct: 234 LRDISDRKRAEQALATAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLMEYTEL-- 291 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +EY+ I S LL+LIN ILDLS+IEAG+ EL S SL + + + Sbjct: 292 --TDEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLS 349 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397 + +K + I I + ++ D+ ++Q++LNLL NA+KFT GG V V+ Sbjct: 350 QIHDKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDE 409 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D G GI + + F Q + G GLGL I + G+ Sbjct: 410 RVRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKIT 469 Query: 458 IRSKLREGVEVIAILPNT 475 + S+ G LP Sbjct: 470 VESREGSGSTFSVHLPFA 487 >gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 897 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LL L++S+L + L V P+ +S + LDI + G L L Sbjct: 144 VFTALMVLLFGLTLSSLFAYRLMQDV---TRPISHMVSVVDRIRRGHLDIRIEGQLLGEL 200 Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + ++ + + I ++ + + +LE+ D +KRA+E K Sbjct: 201 DTLKNGINAMAISLSEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 260 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN+IL Sbjct: 261 SEFLANMSHELRTPLNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDIL 316 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L + + E + +L A EK +E+ K+D + + + D + Sbjct: 317 DFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGLIGDPLRI 376 Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +QV+ NL+ NAVKFT G V + +++D G GI+E + + +F Sbjct: 377 QQVVTNLIGNAVKFTERGNIDVSVELKASKDENIELQFTVRDTGIGISERQQAQLFQAFS 436 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG+ + S+L +G L Sbjct: 437 QADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSL 483 >gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] Length = 571 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567 >gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222] gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222] Length = 1067 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 10/330 (3%) Query: 149 LSISALSNFMLPYAVFLSFFPVV--VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +SI L + V + L + + S + L + Sbjct: 301 ISIVTLLAATVMGLTLSLAKQVTNNLGLVLRFLKSENDDTRPSLDKLIQGKDELSLFAQQ 360 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + ++ + + + E AK ++E + A + + AKS FLA+MSHE+RTPLN Sbjct: 361 VERLTIEREHAKEKLTIAKEDAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNG 420 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G SE++ + P T ++Y+ I S Q LL+LIN+ILD S+IE+G +S + Sbjct: 421 VIGISEILSDTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSA 476 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 S+ + + + ++ +A+E+ I + I P V D+ +RQ+++N +SNAVKFTA Sbjct: 477 SIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAE 536 Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + + + S++D G GI + + + F Q + G GLGL Sbjct: 537 GGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGL 596 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+ ++ GGQ + S +G L Sbjct: 597 AISTQLVELMGGQIQLDSVKGKGSCFYFDL 626 >gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39] Length = 959 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + A + ++ AE N AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 669 EDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILLEEAEELG 728 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + I+ +G++LL LIN+ILD+S+IEAGR +L A + ++ + Q Sbjct: 729 YEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVSGLLESVMGTAQPL 787 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395 + N + ++ ++AD +RQ++LNLLSNA KFT G++ + V Sbjct: 788 MSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TDGKIKIEVSRVSSLPYS 846 Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 SG + D G G++ + + F QG + G GLGL I+ GG Sbjct: 847 QESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGG 906 Query: 455 QFLIRSKLREGVEVIAILPNT 475 ++S L EG ++P Sbjct: 907 NIQVQSTLGEGSTFKVVIPTR 927 >gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 10/268 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + VK + E + A+ +++AE N AKS FLA+MSHE+RTP+N ++ Sbjct: 430 RIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVI 489 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ + + + Y + S LL +I++ILD S+IEAGR E+ L Sbjct: 490 GMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDL 545 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + L +A EK + + P + + D ++QV++NL NA+KFT G Sbjct: 546 RTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQ-G 604 Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + V VG + G +++D G GI + + F Q +I G GLGL Sbjct: 605 EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLA 664 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ GG+ + S+ G E Sbjct: 665 ICKRLVQMMGGEIGVTSRPGVGSEFWFT 692 >gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 646 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 9/324 (2%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 +L +F +V + + + + + + ++ Sbjct: 150 FALLLVGESIKTFLLMVGVIYIALSLIVKPISLLSRAVSDFKDGETPSRLRLPARAFDDE 209 Query: 215 LSCQAEKDDLIAELEVAK-SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +S AEK + E + + +++AE N+ KS FLA+MSHE+RTP+N I+G + + Sbjct: 210 ISLLAEKYNSSVERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASL 269 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ + K+Y+ I+ S + LL++IN+ILD S+IEAG+ +S L D+V Sbjct: 270 LKEMELSS----EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVE 325 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + L+A KN++ ++ + + D K ++QV+ NLL NAVKFT G V Sbjct: 326 QMCAIYTLKAHAKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVV 385 Query: 393 VGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + D+G GIA+ + V F Q + G GLGL I + ++ Sbjct: 386 AKELDAQHIPHIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLV 445 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 + GG+ ++S++ G +P Sbjct: 446 SLMGGELELKSEVGLGSCFEFSVP 469 >gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 507 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 109/475 (22%), Positives = 173/475 (36%), Gaps = 43/475 (9%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----QNPIFPMWS 76 P R + S + L + L+ + +FT MW+ Sbjct: 13 RQPSVAPELRQEFRRTVAFSNSSRLKAVTWLLFWSLVGYLVADYFTIRQAATPRADAMWA 72 Query: 77 L-----ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 + S+ + + W + I + + Sbjct: 73 GIVGMRAVAMATCVAFLWLFGPLRSEDDLRSRHGWVWQAYIAFFLIYTAVIVAYMFPLKG 132 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 L A AV + + + + + Sbjct: 133 SIGPVYIFM--------LGPPAFIAMTTRQAVLHQTLGMAAVIGSLYWFAPGAATVKYHI 184 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + A +S ++I H+ LI E + RK AE + AKS Sbjct: 185 INAAIISCISFIVAHV---TYASTLRDFLNKHLI---ETRNVELEVARKAAEAASQAKSD 238 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHE+RTP+NA+LG +E + + + ++Y+ S HLL+++N+ILD Sbjct: 239 FLAAVSHEIRTPMNAVLGMTEAVLHTPL----DARQRDYVETARESALHLLDVLNDILDF 294 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 SRIEAGR L L +V + + L A +K + + ++ + D +RQ Sbjct: 295 SRIEAGRLRLVSEDFDLPAVVHSAMKTVGLEAGQKGVALDFEMMEGAPRFLRGDPGRLRQ 354 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEI 417 V++NLL N VKFT G V VTVG G G S+ D+GPGI Sbjct: 355 VLINLLGNGVKFTEQ-GAVRVTVGPWDGGQGGESPPDPERPVGVRFSVSDSGPGIPPEFG 413 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F QG G GLGL I + ++ GG+ +RS + G E I L Sbjct: 414 QAIFEAFRQGDGTTSRRYGGSGLGLAICRDLVRLMGGEITVRSTVGRGSEFILGL 468 >gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32] gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32] Length = 1067 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 10/330 (3%) Query: 149 LSISALSNFMLPYAVFLSFFPVV--VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +SI L + V + L + + S + L + Sbjct: 301 ISIVTLLAATVMGLTLSLAKQVTNNLGLVLRFLKSENDDTRPSLDKLIQGKDELSLFAQQ 360 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + ++ + + + E AK ++E + A + + AKS FLA+MSHE+RTPLN Sbjct: 361 VERLTIEREHAKEKLTIAKEDAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNG 420 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G SE++ + P T ++Y+ I S Q LL+LIN+ILD S+IE+G +S + Sbjct: 421 VIGISEILSDTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSA 476 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 S+ + + + ++ +A+E+ I + I P V D+ +RQ+++N +SNAVKFTA Sbjct: 477 SIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAE 536 Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + + + S++D G GI + + + F Q + G GLGL Sbjct: 537 GGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGL 596 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+ ++ GGQ + S +G L Sbjct: 597 AISTQLVELMGGQIQLDSVKGKGSCFYFDL 626 >gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 909 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 134/272 (49%), Gaps = 14/272 (5%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E +L + D+ + N AKS FLA+MSHE+RTP+NAILG +E++ + Sbjct: 360 ELKELSQTFNRMAEMIDDHVQELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQL 419 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P EY+ +G LL LIN+ILDLS++E+GR EL + +L+++V + ++ Sbjct: 420 TP----EQAEYVRICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELM 475 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +RA +K +E+ I P + V D ++Q+++NL+ NAVKFT G + + V Sbjct: 476 AVRAHKKGLELVCHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTER-GEIVLQVERDPD 534 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G GIA + + F Q + G GLGL I++ ++ Sbjct: 535 QPGEAGAIRFAVSDTGIGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMK 594 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G+ + S+L +G R P + Sbjct: 595 GRIWVESELGKGSTFYFT---ARFGQADPIEE 623 >gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] Length = 831 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 10/289 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + A + + + + ++ AE + AK FLA+MSH Sbjct: 122 WVQVLGQAKERGADGRWRQLAGIYRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSH 181 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N ILG ++++ + P ++Y+ + S + LL L+N+ILD SRIEAGR Sbjct: 182 EIRTPMNGILGMTDLLLDSALAP----EQRDYLQTVKSSAEALLTLLNDILDFSRIEAGR 237 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 L E S+ +V E + L LRA +K +E+F + P + +V D +RQV+ NL+ Sbjct: 238 LSLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVG 297 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + + V ++ ++++D G GI + + +F Q + Sbjct: 298 NAIKFTER-GEIELDVTVVDTDDRHATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTR 356 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I + ++ GG+ ++S L EG L RV + +P Sbjct: 357 KYGGTGLGLAICKHLVELMGGELRVQSTLGEGSRFSFSLRLARVASPVP 405 >gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] Length = 558 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 587 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + +++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583 >gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 957 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 169/380 (44%), Gaps = 21/380 (5%) Query: 119 LCWTLLTLV-EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L W ++ + P ++ + + A+ + L + VA + Sbjct: 157 LGWAVIEVSRAPTQVAKYRTILFAVSAVFTAIIVCTFLALRLSRDLTSPLS--QVAQALT 214 Query: 178 AIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 I + LA + S + + I + + + +E+ Sbjct: 215 RIKEGKLDTRVYIEASPELALLQDGINSMAEALAKARSEMQQNIDQATEDLRETLETIEI 274 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 D RK A E + KS FLA+MSHE+RTPLN I+GF+ ++ +GP ++ Sbjct: 275 QNIELDMARKEAIEASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLGP----QQRDQ 330 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +S + LL +IN+ILD S+IEAG+ L + ++L +IV + + ML A EKN+++ Sbjct: 331 LNTILKSSEILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDL 390 Query: 351 F-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISI 405 S + D ++Q++ NL++N +KFT G V V V I++ Sbjct: 391 AGLVYSDVPSHIMGDPLRIKQIVTNLVNNGIKFT-QSGEVVVRVMLEDESDESSLIKITV 449 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G G++ + T+ ++F Q + G GLGL I++ + GGQ + S+L +G Sbjct: 450 TDSGVGLSRVQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVESELGKG 509 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + P++ Sbjct: 510 STFWIELPVE-IAPNQPDNE 528 >gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 982 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 10/268 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + VK + E + A+ +++AE N AKS FLA+MSHE+RTP+N ++ Sbjct: 430 RIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVI 489 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ + + + Y + S LL +I++ILD S+IEAGR E+ L Sbjct: 490 GMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDL 545 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + L +A EK + + P + + D ++QV++NL NA+KFT G Sbjct: 546 RTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQ-G 604 Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + V VG + G +++D G GI + + F Q +I G GLGL Sbjct: 605 EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLA 664 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ GG+ + S+ G E Sbjct: 665 ICKRLVQMMGGEIGVTSRPGVGSEFWFT 692 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 12/273 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + RAEE +LAKS FLA MSHE+RTP+N I+G +E++ +G Sbjct: 523 ITEKKQVDMELRIAKVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELL----LGTRLT 578 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y + S + LL +IN+ILD S++EAG+ EL + +V +LQ +A+ Sbjct: 579 SEQLDYAQAVQESAELLLTVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAR 638 Query: 345 EKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK + I D + D +RQV+LNL+SNAVKFT G + + V S G Sbjct: 639 EKGLTISTFIADEARFLFQGDPGRLRQVLLNLVSNAVKFTER-GTIDIRVFPVSDTGSQV 697 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GIA + F QG+ ++ G GLGL I+++++ GG+ ++ Sbjct: 698 TIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQ 757 Query: 460 SKLREGVEVIAILPNTRVLNF--IPEDNHESTQ 490 SK EG LP + L P ES Q Sbjct: 758 SKPGEGSTFWFTLPVRKPLQTSQSPVHAAESRQ 790 >gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 545 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] Length = 558 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 141/276 (51%), Gaps = 18/276 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ ++ AE N AKS+FLA+MSHE+RTP+N +LG +++ + + Sbjct: 384 ITERKQAEEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL----D 439 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E H S LL +IN+ILD S+IEAGR++L + +L + VRE M ++AQ Sbjct: 440 ENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQ 499 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 +KNI + +ID S+ +V D +RQV++NL+ NAVKFT G++ + V Sbjct: 500 DKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFT-ENGQIFLGVSLMETTAENT 558 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GI P + +F Q ++ +G GLGL I++ ++ GG +R Sbjct: 559 QLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVR 618 Query: 460 SKLREGVEVIAIL--------PNTRVLNFIPEDNHE 487 S+ G L P + E+N E Sbjct: 619 SEPGTGSLFWFTLCLRHAQSIPALLPADDAMEENSE 654 >gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 5/255 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E R A+ N AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 538 ITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEA-EEHGL 596 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E I I + +HLL LINE+LD S+ E+GR L+ L +++ + +++ Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLP 656 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E+ + + + L ++ D +RQ++ NLLSNA KFT G + + G Sbjct: 657 ERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRLMRDGGEWV 715 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I I+D G GI+E + + F Q +I G GLGL I++ GG + S Sbjct: 716 EIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVST 775 Query: 462 LREGVEVIAILPNTR 476 +G LP + Sbjct: 776 PGQGSTFTVSLPVSP 790 >gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1193 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 31/275 (11%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + ++ AE N AKS FLA+MSHE+RTP+NAILGF E+++ G +++ Sbjct: 674 ITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----GIIDD 729 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I SG+ LL LIN+ILDLS+I++G+ +++ I L ++ E + AQ Sbjct: 730 PRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQ 789 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 +K + + I + ++ DE +RQ++ N+L NA+KFT G V + V T Sbjct: 790 KKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHE-GAVKIAVKATKKLPENR 848 Query: 399 ---RGQY-----------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 Y IS++D G GIA + + +F Q G Sbjct: 849 EKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGT 908 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + + GG ++S+L +G P Sbjct: 909 GLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943 Score = 38.7 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 4/168 (2%) Query: 57 LLVANIGTWFTQNPIFPMWSLITL----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 L I W N W ++ + + + V + Sbjct: 15 FLFGTIAVWIILNSYGLFWGVLAGIISGSCTYLLWGHPYAWIVFTAETVFVALLLRRYPN 74 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 + G+ W + + + + + AT LI L S F A + + + Sbjct: 75 FVLLNGIYWLFIGMPLVAFFYYFGVHLPPLATGLIVLKQSVNGIFNAVIANLIITYFPLA 134 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 +L + + + L + +F+SN I S + E Sbjct: 135 SLIGRPKATRKLSFQQTLFNLLVTFVLIPSLILTVFQSNHLINSLENE 182 >gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 752 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + K ++A+ N AKS FLA+MSHELRTPLNAI+G+SE++ E + TY Sbjct: 502 MRKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLD-TY 560 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 E + I+ SG+HLL LIN+ILDLS+IEAG+ +L +++++ + ++ Sbjct: 561 SEDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLKQIEATAKPLVEKNK 620 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + K + D+ +RQ++ N+LSNA KFT G V + + + D Sbjct: 621 NKFIIKCQTKKLKLKNDQTKLRQILFNMLSNAAKFTKE-GMVTLQINPEKKNHLKFEVLD 679 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ ++ V F Q + G GLGLPI++ + GG+ + SK +G Sbjct: 680 TGIGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEMMGGRMGVESKEGKGTT 739 Query: 468 VIAILP 473 I+P Sbjct: 740 FSIIIP 745 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 11/258 (4%) Query: 224 LIAELEVAKSL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 LI E ++ + ++ AE N AKS FLA+MSHE+RTPLN ++G +++ Sbjct: 583 LIDVTERNEAEVLRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCET----D 638 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ Y+ S + LL LIN+ILD S+IEAG+ ELS S +L +V + M R Sbjct: 639 TDQQQGRYVSIAKNSAESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHR 698 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397 A K +E+ I P ++ V D + +RQ+++NL+ NA+KFT + G + + V Sbjct: 699 AASKGLELSCHILPEVASRVLGDSERLRQILINLIGNAIKFTEV-GEIRINVAATSTRDH 757 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G GI E + F Q + G GLGL I + + GG+ Sbjct: 758 EQWVRFEVQDTGVGIPEDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKIT 817 Query: 458 IRSKLREGVEVIAILPNT 475 + S+L G +P Sbjct: 818 VDSQLGSGATFSLEIPFE 835 >gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 544 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 12/348 (3%) Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 L + A +L+ + + + F + + + + +S I Sbjct: 42 ALALLLSHDFALVLLDVQMPGMDGFEIAELMRGIEKTKSIPIIFVTAISKEQKHIFKGYE 101 Query: 193 LATALSFFTYITYHLFKSNVKI-LSCQAEKDDL---IAELEVAKSLSDETRKRAEEENLA 248 F + + +S VK+ L +K L ELE +K AE N+A Sbjct: 102 AGAVDYLFKPLEPEILRSKVKVFLELHKQKILLQKQAEELEQKMMQLSLAQKAAEAANIA 161 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+NAI+G ++++ ++ +EY+G +GQ+LLNLIN+I Sbjct: 162 KSAFLANMSHEIRTPMNAIIGMADLLWETSLTK----EQREYVGIFRTAGQNLLNLINDI 217 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LDLS++EAG +L + ++ +V + + + ++A K + + +I P + V D+ Sbjct: 218 LDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIKPDVPGFVVGDQNR 277 Query: 368 MRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+++NLL NA+KFT G + + + S+ D G GI + + + SF Sbjct: 278 LQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKFSVSDTGIGIEKEKSEIIFESF 337 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + S G GLGL I + ++ GG + S++ +G + Sbjct: 338 TQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEIEQGSTFFFSI 385 >gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 781 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 157/368 (42%), Gaps = 19/368 (5%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVLD 186 +L ++ L ++A+ ML VF + + + Sbjct: 142 YFNDEFISHLLYNLVVEAILILGLAAIILVMLEQLVFRHLRHIAAQTEKLSIDTIGNPIT 201 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244 + + + + L IL ++ + L AK ETR+ E Sbjct: 202 LERQPSDSESEDELDSVVNALNSMRETILIDIKQQAQIEDALLAAKEEKIETRRMIERVK 261 Query: 245 -ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AKS+F+A+MSHE+RTP+N ++G E++ + N++ K Y+ I RSG+ LL Sbjct: 262 AANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPL----NDSQKHYLDVIFRSGESLLE 317 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 +IN+ILD S+IEAG+ L L +++ +C+ + +++IE I P + + Sbjct: 318 IINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPTQLR 377 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEI 417 D +RQ+++NL+ NA KFT G V V V R SI D+G GI++ Sbjct: 378 GDPTRLRQIVVNLIGNAFKFT-SNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGISKEIQ 436 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LP 473 + +F Q + G GLGL I + + GG + S+ +G LP Sbjct: 437 RNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTIRFDLP 496 Query: 474 NTRVLNFI 481 R Sbjct: 497 EDRQRQPP 504 >gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 813 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 103/450 (22%), Positives = 192/450 (42%), Gaps = 20/450 (4%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90 + + + R + L++ +W T + L+ Sbjct: 205 LLIFISIRDRSYLLYVLYLGTFTLNIFTREGLSYQWLWPQATQWNHYSIPILNLLTLAFS 264 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 +++ + LV ++ + + LTL++ + I LL+A++ Sbjct: 265 ILFTCQFLELKKRAPTINRGLVATASVLILFAPLTLIDFHFFIQASTAI-ILPWLLVAIA 323 Query: 151 ISALS---NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +S + L+F V +A + + +++ + F Sbjct: 324 LSIWLIRQGYSPARYFLLAFTAVALATMAYILKTFQLINGGWLLENIMPMGTFIEALLLS 383 Query: 208 FKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 F ++ ++E + E E+ + E A+S FLA MSHE+RTPLN Sbjct: 384 FALAHRMTILKSENARIQNEANEILEQRVSERTSELNAALNARSEFLAVMSHEIRTPLNG 443 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G ++++ G N+ + + I +SG LLNLIN+ILD SRIEAG+ + +++ Sbjct: 444 IIGTVDMLK----GSPLNDEQRHNLNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSF 499 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385 +L +++ E + + Q +AQ + + + P++ D +RQ+++NL+SNAVKFT Sbjct: 500 NLFNLLNESLTLFQHKAQIHSNALTLDVAPNVSERCLGDPVRLRQILVNLISNAVKFT-D 558 Query: 386 GGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + V Y ++D+G GI+E + + F QG + G GLGL Sbjct: 559 NGTITVRAQRDPANSDYLYFEVQDSGTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLA 618 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I + ++ GG+ + SK ++G LP Sbjct: 619 ICRQLVEIMGGEIGVDSKPKQGSRFWFRLP 648 >gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1013 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 6/316 (1%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P A + + S + + + ++ ++ + L + Sbjct: 413 PSTAAYIGERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHR 472 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ ++ AE N AKS FLA+MSHE+RTPLN +LGF++++ + + Sbjct: 473 KKHEAELRRAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLLRGA--ANDPQKRD 530 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I SG++LL++IN++LDLS+IEAG+ E +V E + +L+++A EK + Sbjct: 531 EYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKAL 590 Query: 349 EIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIK 406 + + D +RQ++ NL+ NA+KFT G V + GW + + I+ Sbjct: 591 RLTCDWSGEVPPQIVTDSVRLRQLLTNLIGNAIKFT-QFGSVSIDAGWHAPLQQLTFVIR 649 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E ++ + F Q G GLGL I + I GG + S++ G Sbjct: 650 DTGIGIPEEKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGS 709 Query: 467 EVIAILPNTRVLNFIP 482 + + + P Sbjct: 710 TFTVTI-AAPLYDAPP 724 >gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] Length = 558 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1193 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 31/275 (11%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + ++ AE N AKS FLA+MSHE+RTP+NAILGF E+++ G +++ Sbjct: 674 ITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----GIIDD 729 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I SG+ LL LIN+ILDLS+I++G+ +++ I L ++ E + AQ Sbjct: 730 PRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQ 789 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 +K + + I + ++ DE +RQ++ N+L NA+KFT G V + V T Sbjct: 790 KKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHE-GAVKIAVKATKKLPENR 848 Query: 399 ---RGQY-----------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 Y IS++D G GIA + + +F Q G Sbjct: 849 EKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGT 908 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL I + + GG ++S+L +G P Sbjct: 909 GLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943 Score = 38.7 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 4/168 (2%) Query: 57 LLVANIGTWFTQNPIFPMWSLITL----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 L I W N W ++ + + + V + Sbjct: 15 FLFGTIAVWIILNSYGLFWGVLAGIISGSCTYLLWGHPYAWIVFTAETVFVALLLRRYPN 74 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 + G+ W + + + + + AT LI L S F A + + + Sbjct: 75 FVLLNGIYWLFIGMPLVAFFYYFGVHLPPLATGLIVLKQSVNGIFNAVIANLIITYFPLA 134 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 +L + + + L + +F+SN I S + E Sbjct: 135 SLIGRPKATRKLSFQQTLFNLLVTFVLIPSLILTVFQSNHLINSLENE 182 >gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] Length = 1116 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 17/344 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK- 213 + F + ++ L + +I+ + + Sbjct: 504 MALTVHPEHADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDGRYHWISTQIINVDNPY 563 Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + D+ E E + A N AK +FL++MSH++RTP+NAI+ Sbjct: 564 SNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAII 623 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G S + + E E +G I+ SG+HLL+LIN+ILD+S+IE+G+ L + +L Sbjct: 624 GMSAIASAHL---DDRERIMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNL 680 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + + +++ +A + I + + +V D +RQV +N+LSNAVK+T GG Sbjct: 681 AELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCINILSNAVKYTPEGG 740 Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 ++ + V + D G G+ + + F + S + S G GLG+ Sbjct: 741 KIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGM 800 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I ++I+ G + S +G LP L + +D Sbjct: 801 AITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK--LQDVSQDET 842 >gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 605 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 107/472 (22%), Positives = 177/472 (37%), Gaps = 29/472 (6%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83 G + L + L L + A +W + T+A Sbjct: 13 GARSGAGEAAQALTAILQTQYLRY------LIIASWAVGLWGTVGTLQAVLWFVATVAAG 66 Query: 84 AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL-TIYKS 142 + + +++ W + W L+ + + Sbjct: 67 SVRGAFERRMSGRVD-----AGWGLIFPAVATVTTAAWASAPLLAWFSPSSFGQSLAVAL 121 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 L S L + V S + VV + ++ L+ M TA F Sbjct: 122 LISGYVLVFSQLRSSPKQAIVISSPYSVVALIILGSLWGGPEFMPFLSIMPFTAAGLFVL 181 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 +T + + + + E + E R +A+ N AKS FL +SHELRT Sbjct: 182 VTMTMLR--EERIKAFQEHQAHLIE------ELQGARDKADAANQAKSNFLGVISHELRT 233 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N +LG ++++ + T +EY+ I SG +LL+L+N+ILD+++IEAG+ Sbjct: 234 PMNGVLGAAQLLGSTRL----ESTQREYLSIIRNSGDNLLHLLNDILDMTKIEAGKMTFE 289 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 I L D+ R +A+ K ++ + V D + QVI NLLSNAVK Sbjct: 290 VIDIGLEDLHRRVTGPFAAQAEAKGLQFVSTFEGETPSVVRGDPLRVCQVIQNLLSNAVK 349 Query: 382 FTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V S + S+ D+G GIA ++ + F Q + G Sbjct: 350 FTDTGTIHYVVRSRRISDKRVAFDFSVTDSGAGIAPADLERLFQPFTQVDASSTRRFGGT 409 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GLGL IA+ + GG + S + +G + V+ + P E+ Sbjct: 410 GLGLTIARRMANIMGGDIQVESIVGQGSTFTLSV-EAEVVEWQPMQEAEAID 460 >gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] Length = 571 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ +G +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLPKS 567 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 8/288 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + E ++ + + ++ AE + AK FLA+MSH Sbjct: 125 WLEVCGNASGRGEDGRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSH 184 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N I+G ++++ T+ +EY+ + S + LL +IN+ILD SRIEAGR Sbjct: 185 EIRTPMNGIIGMTDLLLDSTIAG----EQREYLQTVKSSAEALLTIINDILDFSRIEAGR 240 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377 + + SL +V E L LRA +K +E++ + P + SV D +RQ+++NL+ Sbjct: 241 LSVEQIDFSLHSVVSETCRALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIG 300 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V V +G I ++D G GIA ++ + +F Q + Sbjct: 301 NAIKFTEHGEVEVRVRCVQRNGGAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRK 360 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I + + GG+ + S G LP V + P Sbjct: 361 YGGTGLGLAICRQLTELMGGRIGVDSVPGAGSRFEVTLPLRAVADPTP 408 >gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] Length = 558 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 558 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554 >gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 1269 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 3/271 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L ++ ++ S Q E + A LE A+ ++ E N KS FLA+ SHE+RTPLN Sbjct: 550 RLEQNQEELQSQQDELKNQNATLEKARLELARRTEQLELANKYKSEFLANTSHEIRTPLN 609 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+G +E + GPL NE + I+ S L L+N+ILD SR+E + Sbjct: 610 GIIGLTESLIDGAAGPL-NEKTMSNLELINSSAIRLSTLVNDILDFSRMENHELGIQRKP 668 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 IV + + + +K++ + I + + DE ++Q++ NL+ N +KFT Sbjct: 669 TDFYAIVDVVVRVSRELIGDKDLVLVNTIGKDIPIIEGDENRLQQILYNLIGNGIKFT-E 727 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V ++ T +S+KD G GI+ + SF Q + G GLGL I+ Sbjct: 728 SGQVTLSAKTT-DAFLSVSVKDTGIGISPESQDRIFESFEQEDGSTSRNYGGTGLGLAIS 786 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + ++ HGG ++S++ +G E I LP ++ Sbjct: 787 KELVELHGGTIQLKSEVGKGSEFIFTLPISQ 817 >gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] Length = 420 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 108/263 (41%), Positives = 152/263 (57%), Gaps = 8/263 (3%) Query: 220 EKDDLIAELEVAKSLS-------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 E ++AELE +++ + RAE N AKS FLA+MSHELRTPLNAI GFSE Sbjct: 138 ELRAMVAELEASQANLALLARKYEVAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSE 197 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ E GPL + YK Y DIH SGQHLL+LIN+ILD+++IEAG+ L ++L + Sbjct: 198 IMAAEMFGPLGDRRYKGYAADIHGSGQHLLSLINDILDMAKIEAGKLTLHYEPMALDVLC 257 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + +++ +AQE + + L + AD++G++QV+LNL+SNAVKFT GG V V Sbjct: 258 AEAVRLMRGKAQEAQLALTLDCPEDL-HIEADQRGLKQVLLNLISNAVKFTPEGGAVSVK 316 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 V +S+ D G GIA ++ + F Q + QG GLGL + +S++ H Sbjct: 317 VAPRDAATVRVSVVDTGIGIAAKDLERLAQPFEQVEGQHSKSTQGTGLGLALTKSLIELH 376 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG I S+ G V LP Sbjct: 377 GGAMTIESEPGRGTTVWFDLPTR 399 >gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 5/255 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E R A+ N AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 538 ITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEA-EEHGL 596 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E I I + +HLL LINE+LD S+ E+GR L+ L +++ + +++ Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDIIRPLLP 656 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E+ + + + L ++ D +RQ++ NLLSNA KFT G + + G Sbjct: 657 ERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRLMRDGGEWV 715 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I I+D G GI+E + + F Q +I G GLGL I++ GG + S Sbjct: 716 EIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVST 775 Query: 462 LREGVEVIAILPNTR 476 +G LP + Sbjct: 776 PGQGSTFTVSLPVSP 790 >gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 558 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] Length = 558 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] Length = 558 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 554 >gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1078 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 10/265 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + ++ A I + A ++ R++AEE N AKS FLASMSHE+RTPLNAI G S+ Sbjct: 534 ERITHVAVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSD 593 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ L + P +E + I S LL LIN+ILDLSRIEAGR EL + D+V Sbjct: 594 LLLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLV 649 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 R M + +A+ K + + L V D +RQ+++NLLSNA+KFT GG V + Sbjct: 650 RHTWEMFRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGG-VTL 708 Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V + + ++D G GI ++ + F Q +I G GLGL I++ Sbjct: 709 SVTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQ 768 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + GG ++ S++ G + L Sbjct: 769 LAEMMGGTVVVSSEVGRGSTFVCRL 793 Score = 37.9 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 12/136 (8%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91 L +F V L VL+ A + P W SL Sbjct: 78 AAGFRGRVLFWVRIFPVGVFLLGGVLMRAVPSWVWDPETFSPRWFSYASGGLMILYSLAV 137 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LS 150 + + L + L P PE ++ L + Sbjct: 138 IFFRYERYEWFFRAYSPLL-----------AVAPLGFPFIMLPEVFILWYLLGLSFGCMV 186 Query: 151 ISALSNFMLPYAVFLS 166 + +L V + Sbjct: 187 LLSLLAHDARVDVLPA 202 >gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 581 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 8/279 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I + + + + +L +E+ + + R EE + KS FLA+MSHELR Sbjct: 150 LIEDNYRQYRINQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELR 209 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI GF+E++ + N+ EY I ++ LLNLIN+ILDL++IEAG+ +L Sbjct: 210 TPMNAITGFAELLAETPL----NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDL 265 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 SL +++ M L A++K IEI K L ++ D +RQV++NLL NA+ Sbjct: 266 EAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAI 325 Query: 381 KFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT GG + V G T+ + +++D+G GI+ + + F Q + G Sbjct: 326 KFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGG 385 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL I + ++ GGQ + S+ +G + R Sbjct: 386 TGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIELER 424 >gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1255 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 11/258 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL++ ++ E R+RA + AKS FLA+MSHE+RTP+N +LG +E++ + P Sbjct: 680 ITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDP--- 736 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I +SG LL +IN+ILD S+I+AG+ L + +L + + + ++ RA+ Sbjct: 737 -KQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 795 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 EK++E+ +I+P L S+ D +RQ++ NLL NAVKFT G V V V +G Sbjct: 796 EKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDE-GHVLVDVTGERMPTGTK 854 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 IS+ D G GI E ++ V F Q + +G GLGL I ++ GG+ + S Sbjct: 855 LTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVES 914 Query: 461 KLREGVEVI--AILPNTR 476 +G LP+ Sbjct: 915 AEGKGSTFWFEVTLPSAE 932 >gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1129 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 14/284 (4%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 FF + L ++N ++ + LI + ++ AE N AKS FLA+ Sbjct: 441 YRFFFNQAAFRLNENNSGVVGVMEDVTALI----QNAVELRKAKEEAERANRAKSAFLAN 496 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+NA+LG +E+ T +E +EY+ IH + L+++IN+ILD+S+IE Sbjct: 497 MSHEIRTPMNAVLGMTELALETTY----DEDQREYLETIHEASCSLMDIINDILDISKIE 552 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 +G E+ L ++ + L A K +E+ ID L+ D +RQ+++N Sbjct: 553 SGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVN 612 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 LLSNAVKFT G + ++V I I+D G G++E EI + + F Q ++ Sbjct: 613 LLSNAVKFTDE-GEILMSVKAMEKTAKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVS 671 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I + ++ GG+ ++S +G +P Sbjct: 672 TTKRYGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIPL 715 >gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 778 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 157/295 (53%), Gaps = 2/295 (0%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 D LAG + + L + + +I D I + + E ++ AE Sbjct: 485 DFRLAGRAGAEERWLRHRATALRRPDGQIYRLSGAVGD-ITDSRRGEDRLREAKEAAEFA 543 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FL +MSHELRTPLNAI+GFSEV+ E GPL Y +Y I SG+HLL++I Sbjct: 544 NRAKSEFLTNMSHELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVI 603 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILD+SRIEAGR L + +IV ++ RA+ + + +DP+L + + Sbjct: 604 NDILDVSRIEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEA 663 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSF 424 + ++QV++NLL NA+KFT GG + ++ +GQ I + D+G G+A +IP L F Sbjct: 664 RRLKQVLINLLGNAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPF 723 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 Q + +G GLGLP++++ + HGG + S G + LP V + Sbjct: 724 RQIDGQLARRYEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLPAGAVES 778 >gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 413 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 10/343 (2%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 Y + LI + +L+ + V + V +A+ + ++ + + + Sbjct: 80 YNAVMALITSQVESLARELSISTVIMIALVVGIAVWMASFLTRRITAVVGGIHRFSEQET 139 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + D I E + DE RKRAEE + KS FLA+MSHE Sbjct: 140 EYRLPVQGHDEMASLAISFNQMADRIGE---SFVRLDEARKRAEEASRMKSEFLANMSHE 196 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN I+GFSE+I E ++ +E I +S +HLL L+N ILD+++IEAG Sbjct: 197 LRTPLNGIIGFSELIRDEA----ADDETRENADIIEKSSRHLLELVNSILDIAKIEAGAM 252 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 L+ + L +V E + AQ K I + ++ + + AD +RQ+I NLLSN Sbjct: 253 TLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQVSDNCPETIRADPLRLRQIIHNLLSN 312 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT G V ++V + D G GI EG + + F Q + + G Sbjct: 313 AVKFTEK-GEVSLSVELEP-GHLIFRVSDTGAGIPEGMLHAIFEKFRQVDSFLTRSHSGT 370 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +A+ ++ GG ++S + +G LP + + Sbjct: 371 GLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLPLHQPESSS 413 >gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1352 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 13/349 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 L + + + + + V + + + L Sbjct: 755 GLHFAEMQASFILVPLATESQVLGVLSAASSHKRFFPPEQLDFFRSLANQVSLAIHNARL 814 Query: 208 FKSNVK-ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++ ++ + + + EL+ E + +E + K+ FLA++SHELRTPLN+ Sbjct: 815 YEKLIRFSKELETKVAERTLELKNKSLELGEANRALKELDRLKTEFLANVSHELRTPLNS 874 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG+++++ G +N + K + + ++ LL LIN++LDLS++ AGR EL+ Sbjct: 875 ILGYTQLLLDGVDGAINEDQQKSLL-RVEKASNRLLQLINDVLDLSKLRAGRLELNAQKE 933 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L +I+ E + +++ A+ K I + + + + V D + QV+LNLLSNAVKFT Sbjct: 934 DLHEILSEALQVVEPLARAKEISLKVE-ESEVPPVIVDRDKIIQVLLNLLSNAVKFTDSH 992 Query: 387 GRVHVTVGWTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G + + + S + I D G GI E ++ + F Q + G Sbjct: 993 GLITINLNTVSLPESHGLIKDYAAVRISDTGIGIKEDDLQNIFQEFVQIDSSATRRHGGT 1052 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDN 485 GLGLPI++ ++ HGG+ + S+ +G ILP + IP + Sbjct: 1053 GLGLPISRHLVEMHGGRIWVESEYGKGSTFTFILPLPTPKSEAAIPSEE 1101 >gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 975 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 138/251 (54%), Gaps = 6/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + ++ + +AEE AK F+A+MSHE+RTP+N+I+GFS+++ + + Sbjct: 380 ITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPL----D 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++++ ++ + + LL L+NEILD +++E G+ + SL ++ I L A+ Sbjct: 436 QEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLEAK 495 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K++E+ I S+S + + D +RQV+ NL+ NA+KFT G V VTVG T + + Sbjct: 496 KKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEE-GSVTVTVGMTQNQHLFF 554 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GIA+ I V F Q G GLG I++ ++ GG + S+L Sbjct: 555 EVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSELG 614 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 615 KGTCFYFSLPL 625 >gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 703 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 109/396 (27%), Positives = 173/396 (43%), Gaps = 12/396 (3%) Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 A++AA +G+ S + G + +CWT + P ++ Sbjct: 173 ALHAACALMGRYFGVSRVGYGLLDPVEDIFS-----YTVCWTDGFVPPLLGDYPAHVFGE 227 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 K L A + + + A + V+ G L T + Sbjct: 228 KIVAALSAGQTIVVDDLFAASISDEARTLETAADVDTRAIL--VVPFLRGGRLRTIVYLN 285 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 H + + + AE+ + + + R++AEE +LAK+ FLA+MSHE+ Sbjct: 286 AQQPRHWDPAEIAFMEAVAERTRQLIDRAENIRELTQARRKAEEASLAKTEFLANMSHEI 345 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+G ++ M +E++ ++ S + LL LIN++LD+++IEA E Sbjct: 346 RTPMNAIIGIGTLLA---MSQPLTARQQEFVKTLNVSAKGLLELINDLLDVAKIEAHTVE 402 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L E SL I+ E M+ +R++EK + ID D +RQ++LNL SNA Sbjct: 403 LEEVPFSLEQILLEVASMMTVRSREKGLTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNA 462 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT GG V + V + IS++D G GIA + T+ F Q +I G G Sbjct: 463 VKFTQTGG-VEIRVACGAEDSVAISVRDTGIGIAPENLSTIFDKFVQADNSISRKYGGTG 521 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL I +++ GG I S+ G LP Sbjct: 522 LGLAITRNLAELMGGAIAIDSQPGHGSTFTVTLPLR 557 >gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] Length = 545 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQVNALKGV- 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 541 >gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 598 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 2/236 (0%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE+ + F++ +SHELRTPL AI G++E + T+ + E ++Y I Q Sbjct: 364 EAEKLEQMRKDFVSDVSHELRTPLTAIRGYNEALSDGTV--EDPEIRQKYHNIIREETQR 421 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI+++LDLSR+++G+ L + + ++R + L+ + K I + I ++ Sbjct: 422 LERLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDIPQNIPY 481 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + +E + Q+++ LL NAV++T GG++ V+VG +G I+I D G GI + +IP + Sbjct: 482 IMGNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFI 541 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + + G GLGL IA+ I+ H G + S+L G + P Sbjct: 542 WERFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFPLAE 597 >gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] Length = 558 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + FLA++SHEL+TP+ +I GFSE + M N + + ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 381 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LI ++LDLS+IE ++L+ + + +++ E ++L+ ++Q+K I + + S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQVDVL-RHVS 440 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP + Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 499 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G + S++ EG LP + Sbjct: 500 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 554 >gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 619 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 23/338 (6%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + ++ + + + +L + L P+ L ++A + Sbjct: 118 FLFLLVMTLIQTLLIVSCLLWLTMKLILKPIS------------HLSSAMADFHTSPTPD 165 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + LF + L+ + + +L V E++K+AE N+ KS FLA+MSHE Sbjct: 166 KLVMPKRLFHDEISHLTDKYNQCA--EQLRVNYQQIIESKKKAEIANVKKSEFLANMSHE 223 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N I+G +E+++ NE + Y+ + S LL++IN+ILD S+IEAG + Sbjct: 224 IRTPMNGIVGVAELLKETK----PNEVQRNYVDILLTSSHTLLDIINDILDFSKIEAGHF 279 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 EL + L ++++ +RA+++ + IDP++ + AD ++QVI NL+ N Sbjct: 280 ELDPTKFDLKSLIQQQANEYSIRAKQQELFFDCNIDPAVPQEIEADSVRLKQVINNLIGN 339 Query: 379 AVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT G V + + G +KD G GIA+ ++ ++ F Q + Sbjct: 340 ALKFTHR-GYVELNIKLLENETGNQLQFEVKDTGIGIAKDKLDSIFDKFQQADGSTARQY 398 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I+Q I+ GG+ + S++ G +P Sbjct: 399 GGTGLGLAISQKIVELMGGKLQVTSEVDLGSSFYFSIP 436 >gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 534 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 100/475 (21%), Positives = 188/475 (39%), Gaps = 50/475 (10%) Query: 45 LFRVSPILPLFVLLVANIGTW-----FTQNPIFPMWSLITL--AVYAANLSLGKKVMNSD 97 + + ++ + VA + + + + + ++ L + + + + Sbjct: 58 VLMLFSVVVSCTVFVAAWYDFKQTRSWRELVLCLTFFMVGLIDVAHTLSYRGMPNFLTEN 117 Query: 98 IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157 W ++ ++ L ++ P + + + + L I + Sbjct: 118 SLNKSTLYW----VLSRLVESLGLLTAVVINPIRKSKLNPGYFLAGAAVFTLVIITSIGY 173 Query: 158 ---------------MLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLATALS 198 V+ ++ ++ + A ++ S Sbjct: 174 YHPKYPPMFIPGEGQTWLKVFLDYLVIVLKGIALYHLIRLGRKYSADYYLQAALIFGIFS 233 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEV------------------AKSLSDETRK 240 + Y +L + + + K E Sbjct: 234 EAAFTLYASAYDTYNVLGHVYKIFEFAYIMRALFILSVVRLYQTNTVLHNQKRQMAEINL 293 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + E+ N K+ FLA+ SHELRTPL AI+ F+E++ E GPLNN ++YI +I+ S Q Sbjct: 294 QLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNN-MQRDYINEINESSQQ 352 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LLN IN +LDL++IEAG++E+ A+S+ D+ + + + K ++ ++ ++ Sbjct: 353 LLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVIIDVEDNIPP 412 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPT 419 V+ D M QV++NLLSNA KFT GR+ + +S+ DNG GI+ + Sbjct: 413 VYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNGVGISSENLEL 472 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F Q + + QG GLGL + + I+ HGGQ + S L +G +P Sbjct: 473 IFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFYFSIPL 527 >gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] Length = 324 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E S + R +AEE N AKS F+A+M+HELRTPLNAI+G+SE+++ E + Sbjct: 64 ETKNEESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVP 123 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + I +G+HLL LIN++LD S++EAG+ L + ++++ I ++ ++ N Sbjct: 124 D-LEKIASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNN 182 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405 + +L + +D +RQ + NLLSNA KFT G + + + + Sbjct: 183 HLIVNYPKNLGIMQSDVTKVRQCLFNLLSNANKFTET-GTITLQANRYSQKGEDWISLKV 241 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G+ +I V +F Q + G GLGL I + GG+ + S+ +G Sbjct: 242 SDTGIGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKG 301 Query: 466 VEVIAILPN 474 LP Sbjct: 302 STFSINLPA 310 >gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Puerto Rico] gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] Length = 468 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 11/291 (3%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 L + A+ + ++ + ++LS Q + A E ++ AE E Sbjct: 180 HGMLVIPVGVAILSCVCLVVLFYRRSARLLSSQYD----------ANLELQEQKETAERE 229 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +++KS+FLA++SHELRTPLN+I+GFSE+I+ E++GP+ +E YKEYI DIH+SG HLL+LI Sbjct: 230 SVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLI 289 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILD S+ EA + + L IV M+ RA++ +E+ +++ + AD Sbjct: 290 NDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADP 349 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 K M+QVI+N+LSN+VKFT GG V + G + I D G GIA+ ++ V++ FG Sbjct: 350 KRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFG 408 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q +G GLGLP+++ ++ G F I+S+ G V P+ + Sbjct: 409 QADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 459 >gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 539 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 8/279 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I + + + + +L +E+ + + R EE + KS FLA+MSHELR Sbjct: 150 LIEDNYRQYRINQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELR 209 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI GF+E++ + N+ EY I ++ LLNLIN+ILDL++IEAG+ +L Sbjct: 210 TPMNAITGFAELLAETPL----NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDL 265 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 SL +++ M L A++K IEI K L ++ D +RQV++NLL NA+ Sbjct: 266 ETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAI 325 Query: 381 KFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT GG + V G T+ + +++D+G GI+ + + F Q + G Sbjct: 326 KFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGG 385 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL I + ++ GGQ + S+ +G + R Sbjct: 386 TGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIELER 424 >gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192] Length = 900 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 97/463 (20%), Positives = 177/463 (38%), Gaps = 27/463 (5%) Query: 35 REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94 R I FV + + + + + +++ + + Sbjct: 191 RRRERGFFFYAVSNLGIALYFVRMASPLAFLPPVLSYSVSKAGLIVSLGYLFVFYFEFF- 249 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 S + + + L+ ++ P T S L A +S + Sbjct: 250 -SLRGSDRLKRYVLTLVW-------VVGGFMVLVPQTLQDAERVFASSLVLGFAFLVSYV 301 Query: 155 SNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 ++ + F + L V + +I + Sbjct: 302 VISIIIFRHGAREGGFLLIGTGLLVLLGGHDIVYKVMGREPFVWLQGIGIFIFEAMIFIT 361 Query: 212 VKIL------SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + + E+ E + E+ N AKS FLA++SHE+RTPL+ Sbjct: 362 LASRTMRVYARLEEYSTGIEEEVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLH 421 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GF+E ++ G + + ++ + Q L LI+EILD+ ++E G+ L ES Sbjct: 422 AIMGFAEALK----GEQDPREREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESP 477 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V +++ A+ K + +I+ + V D ++QVI+NL+ NAVKFT Sbjct: 478 FNLHEVVGYVCRVMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTE 537 Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GG V V VG + ++D G GI E V SF Q + G GLG Sbjct: 538 EGG-VRVRVGCVEEGEGRWIEVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLG 596 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + IA+ ++ GG + S++ +G V +P + + + Sbjct: 597 MTIARELVRLMGGDVWLESEVGKGTRVWFRIPCVEAMAGVEAE 639 >gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] Length = 558 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 554 >gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 925 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 22/387 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W L L GT Y +++ S L+ + ++ + P+ + A Sbjct: 148 LGWVELELSHHGTLLRGYRSLFTSLLLI--AAGLGVTALLALRMSRAINAPLELISQGVA 205 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EV 230 + ++ L M + L + ++ D E E+ Sbjct: 206 QLKEGRMETRLPPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIEI 265 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P ++Y Sbjct: 266 QNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDY 321 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +S + LL +INEILD S+IEAG+ L +L D++++ + ML A EK +E+ Sbjct: 322 LSTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLEL 381 Query: 351 F-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405 + + D + ++Q++ NL+ NA+KFT GG V V IS+ Sbjct: 382 VSLVYRDTPVQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISV 440 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++E + + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 441 QDTGIGLSEDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 500 Query: 466 VEVIA--ILPNTRVLNFIPEDNHESTQ 490 E LP +R + + + Q Sbjct: 501 AEFWISLSLPKSREDSETAGASWAAGQ 527 >gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1437 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 134/269 (49%), Gaps = 10/269 (3%) Query: 210 SNVKILSCQAEKDDLI-AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 S + L+ Q+E L+ EL K R AE+ N AKS FLA+MSHE+RTP+N ++ Sbjct: 884 SQAEELNSQSENLHLLNEELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVI 943 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ + N +EY I G L+N+IN+ILD S+IE+G+ ++ L Sbjct: 944 GMASLLVETDL----NTEQREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDL 999 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + E + + R + I++ +ID ++ + D ++QV++NL++NA+KFT G Sbjct: 1000 RHSIEEVMDLFGPRVALRGIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGE 1059 Query: 388 R-VHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V +++ G ++ D G GI E ++ + F Q + G GLGL Sbjct: 1060 VFVKISLLKQDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLV 1119 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I++ ++ G + S +G + Sbjct: 1120 ISERLVKLMGDEIWAESNFGKGSVFSFSI 1148 >gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] Length = 836 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 104/267 (38%), Positives = 158/267 (59%), Gaps = 9/267 (3%) Query: 222 DDLIAELEVAKSLS-------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L+ +LE A+ + + RAE N AKS FLA+MSHELRTPLNAI GFSE++ Sbjct: 563 QALVQKLEQARQQQMILARKYEMAKIRAEAANHAKSEFLANMSHELRTPLNAINGFSEIM 622 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E GPL + YKEY GDI SGQHLL+LIN+ILD+S+IEAG+ L +SL +++ + Sbjct: 623 ATEMFGPLGHARYKEYAGDILGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIED 682 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + +++ RA++ ++I + P L + AD + ++Q++LNLL+NA+KFT G V ++ Sbjct: 683 TLRLVRQRAEKAGLKIRVHM-PQLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAA 741 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 T +I++ D G GIA ++ + F Q ++G GLGL + +S++ H G Sbjct: 742 MT-DNNVHIAVADTGIGIAAKDMERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSG 800 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481 + I S +G V ILP + + Sbjct: 801 RLEIDSTEGQGTTVNVILPIRQTGQAV 827 >gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1366 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 159/307 (51%), Gaps = 13/307 (4%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L+ + VK+L+ A + + + + ++ A+ N AKS FLA Sbjct: 846 GMLATYQKQPRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLA 905 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAILGF++++ + ++Y+ I +SG++LL+LINE+LDLS+I Sbjct: 906 NMSHELRTPLNAILGFTQLLGQNSG---LTSQQQDYLQIIQQSGKYLLSLINEVLDLSKI 962 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG L+ + +L ++ MLQ++A KN+ + ++D + V DE +RQV++ Sbjct: 963 EAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQLDQDIPDYVKTDESKLRQVLV 1022 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLL NA+KFT G V + + S Y ++D GPGI E + F Q + Sbjct: 1023 NLLDNAIKFTDA-GYVTLRGSFVSSVSQLYFEVEDTGPGITPDEQERLFQPFVQTDVGR- 1080 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNH 486 +QG GLGL I+Q + GG+ I S + G + + LP + L ++PE+ Sbjct: 1081 RHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFMFNLPVEVINSENIDLEYLPEEEL 1140 Query: 487 ESTQYKC 493 C Sbjct: 1141 TIDDISC 1147 >gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1442 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 11/305 (3%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKDDLIAELEVA 231 L Q+I+S+ VL I + G+ + F + IL + E Sbjct: 742 TLLEQSILSILVLPIFVGGVFWGYVGFDECKEERNWSEDEFSILKAFSNSIAEAIERSQM 801 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++ AE N AKS FLA+MSHE+RTP+N ILGF E++ + ++Y+ Sbjct: 802 EQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELST----EQQDYV 857 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + HR+ + LL LIN+ILD S+IEAG+ + E + +V + + + +A+EK +E+ Sbjct: 858 QEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMH 917 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 I ++ V D +RQ++ NLLSNAVKFT G + V V + + Sbjct: 918 TLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHT-GEILVIVETINESSDKAEIAFEVS 976 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GIA ++ + F Q + G GLGL I+ ++ G ++SKL +G Sbjct: 977 DSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLGQGS 1036 Query: 467 EVIAI 471 + Sbjct: 1037 KFYFT 1041 >gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 1043 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 130/278 (46%), Gaps = 9/278 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 T +F + K + L + + D +++AE N AKS FLA+MS Sbjct: 266 LLMTVDNQEIFSALNKSILLLFLMGSLGIIIIKSIQKKDRAKQKAELANKAKSEFLANMS 325 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NAI G +I + K+Y+ I S L LIN+ILD S+IEA Sbjct: 326 HEIRTPINAIKGLIYLILDTPLSM----QQKDYLKKIQSSTVSLSRLINDILDFSKIEAK 381 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + +L +L D++ + ++A +K +E F D + D + Q++LNL+S Sbjct: 382 KLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVPQKLVGDSLRLGQILLNLVS 441 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + V Q I +KD G G+ + E + + F Q + Sbjct: 442 NAIKFTET-GEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEEQQKLFSQFTQADSSTTR 500 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I+Q ++ GG+ + SK EG Sbjct: 501 KYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFT 538 >gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] Length = 567 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 333 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 389 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 390 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 448 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 449 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 507 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 508 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 563 >gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1045 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 101/470 (21%), Positives = 189/470 (40%), Gaps = 34/470 (7%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPM--------WS-----LITLAVYAANLSLGKK 92 R S +L + I F M W +I + + + Sbjct: 207 LRESSLLAYVGYICTVIVWQFVWGGHANMMLPQALSHWFDTHTDIIFVLIGIGSGLFTIV 266 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS-- 150 + + + + + + +GLC +++ L P + A + Sbjct: 267 FLEAKVTAPKTLPFIKVSIGLLALMGLC-SMVNLFPPVWQNAAVYVVSMLAISCYTYAGF 325 Query: 151 --------ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 + F + + + +AL Sbjct: 326 ESYSNQFYAARYFIFAWSILATCALIGMFSLVDMLPSNFFTTYCFQFGVFFESALFSLAL 385 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + +++ + + I +E D RK A + KS+FLA+MSHE+RT Sbjct: 386 MDKSRHQLEIEVQQATNDLRNNIELVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRT 445 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAILGFS+ ++ + ++ I I+ + +L+ ++N++LD+S+IEAG+ +++ Sbjct: 446 PLNAILGFSKELQQGDF----SADKRDQINIINAAADNLMTIVNDVLDVSKIEAGKLQIN 501 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 S+ +++ E I ++ A K +E I+P + D +RQ++ NLL NA+KF Sbjct: 502 SHPFSINELLEEMIGVMAKSAHLKGLEFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKF 561 Query: 383 TAIGGRVHVTV-GWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + + G G + I I+D G GI+ + + T+F Q A+ + QG Sbjct: 562 TDT-GHIGLAASGKVLEHGIFELNIKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGT 620 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 GLGL I + ++ GQ ++S +G + +LN P + +S Sbjct: 621 GLGLVICKELVKLMHGQLSLQSSPGQGSTFNVTV-RMNILNTKPSISPKS 669 >gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 543 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 9/278 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +++ E+ + E+E A E ++AE N KS FLA++SHELRTPL AILGF+ Sbjct: 119 QRVIRYSVERHAMAREMERANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFT 178 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + + I ++GQHLL+++N+ILDLS+IEAG + S S I Sbjct: 179 DLVLDHEL----EPEVERASLTIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQI 234 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + E I +L++RA K I++ P + + +D +RQ++LNL+ NA+KFT G V Sbjct: 235 IEEVISLLRVRATAKGIDLRFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTER-GFVQ 293 Query: 391 V---TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V TV I + D G G+ ++ + F Q +I G GLGL I + Sbjct: 294 VNMSTVELEGKPQLRIDVSDTGIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRR 353 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 ++ G S+ G + P V + E Sbjct: 354 LLELMDGHISASSRPELGSTFQVVFPLHAVEDSGQEYE 391 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 148/282 (52%), Gaps = 9/282 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + ++ +++ L + +A++ +KS FLA MSHE+RTP+NA Sbjct: 350 LSRGVIFVIEDISDRKKASELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNA 409 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG +E+++ ++ NE +EY+ +G+ LL +IN+ILD S+IE G+ +L Sbjct: 410 ILGMAEMLQETSL----NEDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPF 465 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 +L ++V + + RA+EK + + +K+ L+ D +RQ+I+NL+ NA+KFT++ Sbjct: 466 NLRELVDDVNKLFVYRAEEKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSV 525 Query: 386 GG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG V +V ++KD G GI + ++ TV SF Q + G GLGL Sbjct: 526 GGVTMSVTESVMDDGAPCCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGL 585 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPE 483 I++ ++ GGQ + S+ +G LP +PE Sbjct: 586 AISKKLVELMGGQIWVESEPGQGTTFFFKLPLAPDQKVQLPE 627 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + AE N AKS FLA+MSHE+RTP+N ++G +E++ T+ + Sbjct: 520 VTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL----D 575 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S + LL +IN+ILD S+IEAG+ ++ +L V + + + LRA Sbjct: 576 AEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAH 635 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 +K +E+ + P + + D +RQV++N+L NA+KFT G V + + Sbjct: 636 DKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTER-GEVVLRIRQEVASNGKP 694 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++ D G GI ++ ++ +F Q + G GLGL I ++ GG + Sbjct: 695 LLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVE 754 Query: 460 SKLREGVEVIAI 471 S +G Sbjct: 755 STPGQGSVFHFT 766 >gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 545 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 12/274 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + I + + A+ ++++ AE N AKS FLA+MSHE+RTPLN ILG ++++ Sbjct: 559 RVQISLDIGQRKQAEEALKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT 618 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 N+ KEY+ RS L L+++ILD+SRIEAG+ ++ ES + I Sbjct: 619 ----DPNDEQKEYLLGAIRSTNRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISE 674 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + + A+ K + + + D L + DE +RQ++ NL+ NA+KFT G++ + Sbjct: 675 LFDMEARGKGLLLEFRWDNILPMLLVGDEARLRQILFNLVGNAIKFTEK-GKIRIDASLL 733 Query: 397 SGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 +++ D G GI+E ++ + F Q + QG GLGL I + ++ Sbjct: 734 PRSSDSSVRVLVTVSDTGIGISEEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKL 793 Query: 452 HGGQFLIRSKLREGVEVIAILPNT-RVLNFIPED 484 G I S EG LP PE+ Sbjct: 794 LDGDISIDSTPGEGTTFYLSLPFKLPATKQKPEE 827 >gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 567 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 333 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 389 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 390 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 448 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 449 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 507 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 508 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 563 >gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 891 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 94/322 (29%), Positives = 167/322 (51%), Gaps = 21/322 (6%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE------ 220 + +++ +++ + L I+L+ + + L + K++ + +++ Sbjct: 290 MIVLFISILITSLVFISYLGITLSARILSYLKMTISSMALIEKNHDYSIQIKSDGNDEFT 349 Query: 221 -----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + LI+E + + ++ AE+ NLAKS FLA+MSHE+RTPLN I+G S ++ Sbjct: 350 LFSKNLNALISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILS 409 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P+ +Y+ I S Q LL LIN+ILD+S+IE+G L + L +I+ + Sbjct: 410 ETKLTPI----QHDYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDT 465 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + ++ +A EK++ + I P L S + D+ +RQ+++NL SNAVKFT G V + V Sbjct: 466 VSIIISKANEKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPK-GHVQLDVE 524 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +T IS+ D+G GI + ++ ++ F Q +I G GLGL I++ ++ Sbjct: 525 FTKKENNTVELTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVD 584 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 G+F ++S EG L Sbjct: 585 LMDGEFTVKSTKGEGSTFSFSL 606 >gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 614 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 27/452 (5%) Query: 36 EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLI------TLAVYAANLSL 89 + + S+ R + + + A I I W L+ T+ + Sbjct: 22 RVYKEQMTSIARTTTFAMIGYAINAVIAFIAFVGAIPFGWLLVWTICSLTICTGIGLQTY 81 Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 +K LV + L W +L + G I + T+ +A Sbjct: 82 ARKF--ETKSKRRNVHSANIALVYAFLLSLPWAVLAVTWLGWLDDNRQIILIALTVGMA- 138 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + +L +P A +S ++ L + + + LA + A+ L+F ++ + Sbjct: 139 ASGSLLLMPVPAAAAVSAITILAPLIVKWGLLGAEKNFILAALAASFLAFLLFLIAIGGR 198 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + E+ + ++ V+++ + R+ AE AKS F A+MSHE+RTPLN+I+G Sbjct: 199 MFL-------ERLHALDQIRVSEAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIG 251 Query: 270 FSEV-IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++ + + + + + + + +G+ LL ++N+ILD S IEAGR + +S+++L Sbjct: 252 YTSLVLARQGLSREDTND----LSIVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTL 307 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKFTAIG 386 ++ C+ + +EK + I +IDP L + AD +RQV+LNL++NAVKFT+ G Sbjct: 308 PPLIEGCVALFFAEGREKGLVIRSEIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFTSEG 367 Query: 387 GRV---HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + + ++D GPGI IP + F Q G GLGL Sbjct: 368 SVVVGAKILDREENSANVRFFVRDTGPGIRADLIPNLFQRFSQLDNGRDRR-GGSGLGLA 426 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I +SI+ +GG+ I S EG +P Sbjct: 427 ICRSIVQANGGKIDIESHEGEGSTFWFEVPLE 458 >gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 826 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 22/299 (7%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ + + L L+ E+ + A+ NLAKS FLA +SHE+RTP+N Sbjct: 267 QRKQAEAALYLQLQKTLQLQTALQTKNQALLESSQAAQAANLAKSEFLAMISHEIRTPMN 326 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A++G +++++ + P ++++ I SG+ LLN+IN+ILD S+IE+G+ EL Sbjct: 327 AVIGMTDLLKDTHLDPH----QQDFVETIRTSGESLLNIINDILDFSKIESGKLELELHP 382 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 + V E + ++ +A K +E+ I+P + D +RQ+++NLL NAVKFTA Sbjct: 383 FPISTCVEEALDIVNSKATAKGLELAYLIEPGTPNHIQGDANRLRQILVNLLGNAVKFTA 442 Query: 385 IGGRV-HVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G + ++ + +KD G GIA + SF Q +I Sbjct: 443 DGEVIVTISARDVATAEMTPEVPLSLHELLFEVKDTGIGIAPEHQQKLFQSFCQLDSSIT 502 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP-EDNHESTQ 490 G GLGL I++ + GG + S++ G + + +P ++H +T+ Sbjct: 503 REYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFTM----AASALPGPEDHRATE 557 >gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 702 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 2/254 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ + AE N KS FL +MSHEL+TPLN+I+GFS+++ GPL Sbjct: 433 RDITARKKAEEALINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPL 492 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE Y G I +G++LLN+IN IL+LS++E+ EL+ S+ + + + I + Sbjct: 493 -NEKQSRYAGFISSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQ 551 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 +KNI++ D ++ADE RQ++ +LL+NAVKFT G + ++ G Sbjct: 552 ILKKNIKLNYNSDSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDIS-SKQEGGIVT 610 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I +KD G GI E + + F Q ++ +G GLGL +A+ + HGG + SK Sbjct: 611 IKVKDTGIGIPEDSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKT 670 Query: 463 REGVEVIAILPNTR 476 +G LP R Sbjct: 671 GKGSSFKVELPVNR 684 >gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 587 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar chinensis CT-43] Length = 587 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1056 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 153/309 (49%), Gaps = 10/309 (3%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 A+ + I + +L A + I + V E IA E Sbjct: 745 AAAIRARWITVRFEHGREVRTILKWAGAVLGVILCMMLLVFVWNRRLAKE----IARREE 800 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++AE + KS FLA+MSHELRTPLN+I+GFS ++ E GPLN E K+ Sbjct: 801 LEAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPLNKE-QKKQ 859 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +G + S +HLL LIN++LD+S+IEA + L+ + V + ++ A++K +E+ Sbjct: 860 MGMVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLEL 919 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISI 405 K D S ++ D++ M QV++NL++NA+KFT G + G ++ I I Sbjct: 920 ELKQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQI 979 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI G+ + F Q + +G GLGL I + ++ GG+ + S++ G Sbjct: 980 QDTGIGIQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHG 1039 Query: 466 VEVIAILPN 474 LP Sbjct: 1040 SRFTVRLPV 1048 >gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501] gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501] Length = 1044 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 140/258 (54%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ ++ ++ AE N AKS FLA+MSHE+RTP+NAILGF ++++ + + Sbjct: 691 ITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKS----KITD 746 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + Y+ I R G+ LL+LI++ILD+S+IEAG+ +++ I L +I+ E M +A+ Sbjct: 747 EKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLEKAK 806 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK ++I I+ + V DE +RQ++ NL+ NA+KFT G + ++V + Sbjct: 807 EKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEE-GLITISVKRDLLQWKDD 865 Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I+IKD G GIA + V F Q G GLGL I + + GG Sbjct: 866 QYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGGTI 925 Query: 457 LIRSKLREGVEVIAILPN 474 + S+L +G + P Sbjct: 926 QLESELGKGSTFTLLFPR 943 >gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 676 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 4/287 (1%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L +A L+ + + + EK L + + AE + Sbjct: 386 LLISIAEQLAIAIHQSELMRSLQDSAQRLTQEKQTLEQRVIERTMALRDALLAAEAASRL 445 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S FLA++SHEL TPL ++G S + +G L+ + ++Y+ IH SG+HLL++IN+I Sbjct: 446 RSEFLATISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLDMINDI 504 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEK 366 LDLS+IEAG+ L+ + SL+ I I L +A ++ N+++ +IDP AD Sbjct: 505 LDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALSEQVNLKLDLQIDPRRDRFTADAA 564 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + Q++ NLL+NA+KFT GG V + + W ++D G GI E ++P + F Q Sbjct: 565 RIEQILWNLLTNAIKFTPEGGNVTLRI-WVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQ 623 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +G GLGL + + ++ H G+ + S + G +P Sbjct: 624 LDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 149/305 (48%), Gaps = 25/305 (8%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 G +A T +L + QAE+ L ++AK+ ++ R Sbjct: 504 LFWGNIAAKPITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELAR-----ATR 558 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K FLA+MSHELRTPLNAILG SE G + N+ + I I RSG+HLL LIN+ Sbjct: 559 LKDEFLANMSHELRTPLNAILGMSEGFIEGVFGAI-NQKQAKAIATIKRSGKHLLELIND 617 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLS+IE+G+ EL S +S+ I + +Q A +KNI + I +L ++ D++ Sbjct: 618 ILDLSKIESGKLELQISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNLDTIQVDDRR 677 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------------------GQYISIKDN 408 +RQV++NLLSNAVKFT GG V +TV + D Sbjct: 678 LRQVLINLLSNAVKFTPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSPHICFRVTDT 737 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA +I + F Q ++ G GLGL + + I HGG L+ S++ +G Sbjct: 738 GIGIASEDISKLFQPFTQLDSSLNRNYTGTGLGLALVKRITTLHGGTILVNSEVGQGSCF 797 Query: 469 IAILP 473 +P Sbjct: 798 TVRIP 802 >gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 673 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 6/294 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + K+N + E+ + L AK +++ R+ AE N+ KS+FLA+MSHELRTP Sbjct: 136 SAEILKTNQLLQQEIVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTP 195 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAI+G+SE++ + + + + I +G+HLL LIN++LDLS+IE+G+ +L Sbjct: 196 LNAIIGYSEILREDAEDLEQEDFIPD-LKKIDTAGRHLLGLINDVLDLSKIESGKMDLLI 254 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 ++L ++ + + +Q ++K + + L + D + Q++LNLLSNA KFT Sbjct: 255 EPVNLDMLIDKVLGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFT 314 Query: 384 AIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + + T G + DNG G+ E + + F Q + G GL Sbjct: 315 EQ-GIIEFQIYHQINTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGL 373 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH-ESTQYKC 493 GL I + GG + S G LP + I + + ES+ K Sbjct: 374 GLTITKDFAEMMGGHIKVASDFGFGSTFTLSLPIQAKITPIKKASKLESSTLKA 427 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL + T+ A + + AKS FLA MSHE+RTP+NAI+G +E+++ + Sbjct: 730 ITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEIRTPMNAIMGMAELLKETRLDV--- 786 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ ++G+ L++LIN+ILDLS+IEAG + + ++ + M++ RA Sbjct: 787 -DQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMMKPRAL 845 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQ 401 EK + +I P + + D +RQV++NL+ N++KFT G+V + +G Sbjct: 846 EKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNK-GQVRLVIGKNPSKKDTL 904 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ISI D G GI E + F Q ++ G GLGL I++S++ GGQ +S+ Sbjct: 905 LISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIWFKSR 964 Query: 462 LREGVEVIAILP 473 G +P Sbjct: 965 PGTGTTFFFTIP 976 >gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 667 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 24/361 (6%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + + LL L++S LS+ +L V + Q ++++ A Sbjct: 193 IAWSVALALLFWLAVSLLSHLVLRQVTRSFNNLVSGIAALQDGDYGTLIEVDSDDEPGRA 252 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + L + + E A+ + + AE N AKS FLA+M Sbjct: 253 AAAVNGLARSLQQRS--------------EENRQAREELLQAKSEAEAANTAKSEFLANM 298 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP++ ++G ++++ L + N Y+ +I ++L++LIN++LD+S+IEA Sbjct: 299 SHEIRTPMSGLIGNAQLLRLTQL----NAEQTGYLTNIETDAKNLMSLINDVLDISKIEA 354 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ EL + SL V + + + R K I + +I L S++ D+ ++Q++ NL Sbjct: 355 GKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTHEIAADLPDSLFGDQLRLKQILYNL 414 Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NA+KFTA G + V V S+ D G GI + F Q ++ Sbjct: 415 VGNAIKFTAK-GEIRVKVELLERHDDKARFCFSVTDTGIGIRPEAREKIFAPFIQADASV 473 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G GLGL I ++ GG + S+ +G LP +P+ Sbjct: 474 TRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTFSVTLPFLINSQPLPQQETLPQDR 533 Query: 492 K 492 K Sbjct: 534 K 534 >gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 1236 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 19/288 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + A + ++ A + AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 667 EDITERKAASVALKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSG 726 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I +G++LL LIN+ILD+S+IEAGR +L S+ ++ I Q Sbjct: 727 YRHIVPD-LERICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPL 785 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395 + + + + ++AD +RQ++LNLLSNA KFT G++ + V Sbjct: 786 VDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNAAKFTTA-GQIKLKVSPQPAEFPN 844 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T+ + D G G++ ++ + F QG + G GLGL I+Q GG Sbjct: 845 TAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQMMGGT 904 Query: 456 FLIRSKLREGVEVIAILPN----------TRVLNFIPEDNHESTQYKC 493 I S+L G ILP + P+ E++ C Sbjct: 905 ITIDSQLDCGSTFTVILPREVKQTKQQSTESLDESDPQPQQETSSILC 952 >gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 806 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 10/281 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + I E++ A+ + K + K FLA+MSHELR Sbjct: 371 LLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELR 430 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+ILG E ++ + GPLN + + + + SG+HLL+LIN+ILDLS+IEAGR +L Sbjct: 431 TPLNSILGMIETLQNQVYGPLNGKQVQS-LEIVENSGRHLLSLINDILDLSKIEAGRMDL 489 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + S+ +V + +Q A +K I + +I P+L V D++ + QV++NLL+NA+K Sbjct: 490 DLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIK 549 Query: 382 FTAIGGRVHVTVGWTSGRGQY---------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 FT GG+V V +G+ ++ D G GI + + F Q A+ Sbjct: 550 FTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALN 609 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL + + I+ HGG + SKL EG +P Sbjct: 610 RRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650 >gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] Length = 1065 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 140/268 (52%), Gaps = 10/268 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + E + A + N AKS FLA+MSHE+RTPLN I+GF+E++ + N+ + Sbjct: 395 ETLVETAKEDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDL----NDEQR 450 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ I +S ++LL++IN ILDLS+IE+ E+ + + + A EKNI Sbjct: 451 EFLSIIDKSSENLLSIINNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNI 510 Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQY 402 ++ +DP++ + D ++++++NLLSNA+KFT+ GG V++ + Sbjct: 511 DLNFYMDPTINPKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIK 570 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S++DNG G+ + + + +F Q +++ G GLGL I+ + GG+ + S Sbjct: 571 FSVQDNGIGMTQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAK 630 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G +P V++ H T Sbjct: 631 DQGTTFFFTIPFEEVISTETNYAHAFTD 658 >gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32] gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32] Length = 645 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 160/348 (45%), Gaps = 13/348 (3%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVK 213 F L A V++A + S ++ I M + +L + ++ Sbjct: 165 LLFTLNLAGVGILCIVIIATAVGVFNSWNMARIMANRMGRLSAGASVVGDGNLDHRIAIQ 224 Query: 214 ILSCQAEK----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 AE D + A+L +++R+ AEE N AKS+FLA+MSHELRTP+N ILG Sbjct: 225 GDDEFAEFSCAFDAMTAKLASTYLELEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILG 284 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ G L + +E + +SG LL +I++ILDLS+IEAG+ ++ E SL Sbjct: 285 VLQLLLSGHAGQL-EKKQRELLLKATKSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLR 343 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388 + + + AQ K + + I P + V D+ +RQV+LNL+ NAVKFT GR Sbjct: 344 KCLSDAVDYFSSEAQGKGLHLTLSIAPDVPDVVKGDQVRLRQVLLNLIGNAVKFT-DHGR 402 Query: 389 VHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V V T +I D G GI + + SF Q + + G GLGL Sbjct: 403 VEVKAVTGNKTATGETEITFTINDTGIGIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLA 462 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 I+ I+ GG+ S+ EG +P + HE+ + Sbjct: 463 ISSQIVEMMGGRIAFDSREGEGSTFFFTVPLAVEGEGRDDSRHETPPF 510 >gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L] gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L] Length = 587 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1346 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 23/304 (7%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 T S + + + A+ + + + ++AE AKS FLA+MSHE+ Sbjct: 582 VRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQAEIATQAKSEFLANMSHEI 641 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N ++G ++++ + P + I SG+ LL LIN+ILD S+IEAGR E Sbjct: 642 RTPMNGVIGMTDLLLDTELRP----EQRSLAESIQSSGEALLALINDILDFSKIEAGRLE 697 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L +L ++ + ++ +RA EK +E+ DP + V D +RQ++ NL+ NA Sbjct: 698 LESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNA 757 Query: 380 VKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQGS 428 +KFT G V V V + R Q +++D G G+ E +I + F Q Sbjct: 758 IKFTHQ-GEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIGVPEDKIDLLFNKFSQVD 816 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA----ILPNTR--VLNFIP 482 + G GLGL I++ + GG+ ++S+ G + L + L +P Sbjct: 817 ASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFTARLTLQKKQEEPLPALP 876 Query: 483 EDNH 486 +D H Sbjct: 877 QDLH 880 >gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] Length = 587 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 15/278 (5%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E+ + E ++ AE N AKS FLA+MSHELRTPLN I+G SE++ + Sbjct: 341 EEIHAYQERLKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG---- 396 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 EY I +G++LL LIN+ILD+S++E+G+ ++ L ++ L + Sbjct: 397 ELVEYARTIQTAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIH 456 Query: 346 KNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 KN+ ++ + +V DE + QV+ NL+ NA+KFT+ G V + V G+ Sbjct: 457 KNLRFVLEVASEIPAVVISDEARLSQVLFNLVGNAIKFTSR-GEVVLRVWMEEEEGRAEL 515 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GI E+P V F Q + QG GLGL IA+ ++ GG+ + S+ Sbjct: 516 VFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESE 575 Query: 462 LREGVEVIAILPN------TRVLNFIPEDNHESTQYKC 493 +G +P RVL F+ + E +++ Sbjct: 576 EGKGSCFTVRIPFQVPVSSARVLPFVRDGLEEQVEWRG 613 >gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 571 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 337 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 393 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 394 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 452 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 453 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 511 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 512 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 567 >gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] Length = 1057 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + +E R +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 274 LRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP 333 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +YI IH S LL +IN+ILD S+IEAG+ + E L D++ ++ Sbjct: 334 ----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYLDDVLHNVSMVTGQ 389 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 +A EK +E+ I + ++ D + Q+I+NL++NAVKFT G V V V + Sbjct: 390 KAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQGEISVSVKVIRSLDD 449 Query: 400 GQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S+KD G G++E + + +F Q + G GLGL I + ++ GG+ Sbjct: 450 KIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSICRRLVELMGGEIS 509 Query: 458 IRSKLREGVEVIAILPNTRVLNF 480 + S+L G + V++ Sbjct: 510 VDSELNVGSTFRFNISVGAVMDS 532 >gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] Length = 558 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 380 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L + EK I + + Sbjct: 381 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQVNALKGV- 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 440 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 499 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 554 >gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas fluorescens SBW25] gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas fluorescens SBW25] Length = 1243 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 107/503 (21%), Positives = 193/503 (38%), Gaps = 31/503 (6%) Query: 13 GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72 I L F + TL ++L P V I ++ Sbjct: 289 ANDIQAATGLLQNAAALSKRFAERVATLEAQTLSFRLSPSPEVASAVGAILDELSRLSRV 348 Query: 73 PMWSLI------TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 S+ L VY + R + + GL Sbjct: 349 LPSSVGLQTKATALTVYDQIAGYRAAFARFHQASNSLSGARDQVRNEARSAGLLVARFAG 408 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + ++I S + F++ V +A + + + + + Sbjct: 409 EARSEALVHNDRGMLATVVAGTVAILLASAIAWSTSRFVAQPIVALASAMRRLAAGDLNA 468 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL------------------ 228 + + T ++ ++I +AE + ++ Sbjct: 469 AIASVGRGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDTLHQQ 528 Query: 229 ----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E + R +AE N AKS F+A++SHELRTPL IL E + T+ P + Sbjct: 529 TEVLEAQAVELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLPPAD- 587 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I R+ L+N +N+ILD S+ EAG++EL + I L +V + A+ Sbjct: 588 --WRVQIDRAQRNALRLMNRVNDILDFSKAEAGKFELCPAPIDLNKMVGVLAEDAAMVAE 645 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + IDP+L +V+ D + +++LNL+SNA+KFT GG VH+ V G ++ Sbjct: 646 GKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTALDGDRFELA 705 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GIA ++P + F Q + G G+GL + + ++ GG+ + S+ + Sbjct: 706 VQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKYLVELMGGEVGVNSEPGQ 765 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP + +P + + Sbjct: 766 GSCFFVRLPLGDEQDTLPTEASD 788 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 12/157 (7%) Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 +S+ ++ + + + + + + ++I L + D + +++NL+ NA + Sbjct: 1085 ETVSVPALIEDALRLSAGSLARQEVAVVKEIA-DLPLLSLDRHRVLLILVNLIGNARQAM 1143 Query: 384 A----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + + G +S+ DNG GIA + + S + + G G Sbjct: 1144 DGVVDRNPCITLDASLVDGSVLRMSVADNGNGIAPEHLARIF------SHGFTTRKDGHG 1197 Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 GL GG+ + S +G +P Sbjct: 1198 FGLHSCALAAQEMGGRLTMHSDGAGQGATFTLDIPLE 1234 >gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1027 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 132/291 (45%), Gaps = 16/291 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + L A + + + + AE N AKS FLA+MSHE+RTPLN Sbjct: 608 IIDTAKQRLKTTARLIGEMVSRSMVEQDLQKATHLAETANRAKSEFLANMSHEIRTPLNG 667 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + KEY+ S + L L+++ILD+SRIEAGR E+ E Sbjct: 668 VLGMLQLLETT----DQTDEQKEYLFGAISSTKRLTRLLSDILDISRIEAGRMEIVEVEF 723 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385 ++ + A+ K + + D L V DE +RQ++ NL+ NA+KFT Sbjct: 724 NIKKTRDSIKELFNPEAKGKGLRLEFGRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEK 783 Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + + ++++D G GI E + + F Q + QG GL Sbjct: 784 -GEIRIDASLLPSSSDSHVRVLVTVRDTGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGL 842 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 GL I + ++ GG I S + EG V LP +P+ +S + Sbjct: 843 GLSIVRRLVKLMGGDISIDSTVGEGTTVYLSLPFK-----LPKTEQKSVEI 888 >gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 713 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 2/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + ++ + + +AE + KS F+ +MSHELRTPLN+I+GFS+++ L Sbjct: 458 RDITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSEL 517 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N + +Y+ +I +SG+ LL+LIN+ILD+S++EAG+ E+ + + + ++++ Sbjct: 518 TNA-HHKYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPL 576 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A +KNI+I + + + ++AD +QV+ N+L+NA KFTA G+V VT + + Sbjct: 577 ASKKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAK-SGEKETS 635 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 IS+KDNG GIAE + V F Q A +G GLGL + +S + HGG + S+ Sbjct: 636 ISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEE 695 Query: 463 REGVEVIAILPNTRVLN 479 +G I +P + + Sbjct: 696 GKGSTFIFTIPQQDIPD 712 >gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii] gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii] Length = 823 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 107/475 (22%), Positives = 190/475 (40%), Gaps = 32/475 (6%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 V ++ + V V + W P + W L +A + + Sbjct: 176 VVTISAIFEASVALVASVGRLVLWADFMPFWMTWWLGVVAGIITVSPFLIHCLVWRPQRK 235 Query: 102 EVYVWRIW--LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT----------LLIAL 149 + ++ V + +GL + T+ + P I+ + + Sbjct: 236 FLKPAKMVEGFAVMVVTLGLLVVIYTVTIYTYFKPLPYLIFPVILYTSFRFNRLGWALVV 295 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + S+L + + + A + + + + G L Sbjct: 296 ASSSLFVAWATVRRKGALYSISGASRVEPRLLIQIELFVSVGALVAISLAAAVREKRHLS 355 Query: 210 SNVKILSCQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ L+ + E L + A +R AE+ + AKS FLA+MSHE+RTP++ I Sbjct: 356 KKLERLNERLEVLVLQRTTQLLKANEELTASRTAAEQASQAKSDFLANMSHEIRTPIHGI 415 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG S + + E ++ + + LL+LIN ILD+++IEAGR+E+ + + Sbjct: 416 LGMSAL----VLATGLTEEQRDNMTTVKDCADMLLHLINGILDVAKIEAGRFEVELVSFN 471 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 L +++ + +L+ RA+EK + + +D + +V D +R +LNL+ NA+KFT Sbjct: 472 LCHVIKSTLHILEPRAREKRLRLKWDVDARVPTVLVGDSGKLRHCLLNLVGNALKFTHQ- 530 Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V VTV + D+G G++ ++ + F Q +I G GLGL Sbjct: 531 GYVQVTVAPYVDGLYPSLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLYGGTGLGLC 590 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLN----FIPEDNHEST 489 I Q + GGQ + S+ G +LP TRV PE E+ Sbjct: 591 IVQRFVELMGGQICVESEYGTGSTFCILLPFYLIEGTRVEETSNYEAPEAPSETA 645 >gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1267 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 13/277 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + E ++ AE KS FLA+MSHE+RTP+N I+GF ++ + N Sbjct: 487 VTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQL----N 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ I QHLL +IN+ILD S++EAG+ + +L +++ + +L+ +A Sbjct: 543 SKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQAS 602 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398 +K +E+ + + + D ++QV++NL +NA+KF+ G + + V + Sbjct: 603 QKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQ-GNIFLRVEKIDQSDSDS 661 Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 IS ++DNG G+ E ++ + SF Q + G GLGL I++ ++ GG+ Sbjct: 662 DQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEI 721 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 + S+ G LP + + I + ++ K Sbjct: 722 SVSSEYGVGSTFSFSLPFGILASGIQTNQRDNIDLKG 758 >gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 662 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 24/326 (7%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + P+ V S A + + ++ + + + I H + +I + + Sbjct: 287 FYAPIRVQTSLLAGVILGLIVLGVLAITLLLRLLTGKIIIHASEMEAEIRRKTLALEKEL 346 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E ++ ++ A+ N AKS FLA+MSHE+RTP+NAI+G ++++ + NE Sbjct: 347 QERRQMQTALQLAKEEADVANRAKSAFLANMSHEIRTPMNAIIGIADLLWETPL----NE 402 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+++ +G +LL LIN+ILDLS+IE+G+ L L ++V + I + RAQE Sbjct: 403 EQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDTIALFSTRAQE 462 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--------GW 395 K +E+ ++ + + D +RQV+ NLL NA+KFT G +H+ V G Sbjct: 463 KGLELTVRLPDDIPRLLLGDVGALRQVLFNLLGNAIKFTETGAVSLHIEVADPVVSPSGA 522 Query: 396 TSGR----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 T+ S+ D G GI + SF Q ++ G GLGL I Sbjct: 523 TADPNPPHFPGQPVHLRFSVIDTGLGIPPEWQDRIFDSFTQVDASLTRRFGGTGLGLAIC 582 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GGQ + S+ +G Sbjct: 583 KRLVELMGGQIWVDSEPGKGSTFTFT 608 >gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++ V I E + ++L + ++ AE N +KS FLA+MSHE+RT Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRT 294 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G ++ P +Y+ I S LL LIN+ LDL+R+E G+ + Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAID 352 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + L DI+ + ++ RA EK +++ + P++ + D + QV++NL SNA+K Sbjct: 353 QIPFDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412 Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 F+ G V ++ ++++D G GIA ++ T+ F Q + G Sbjct: 413 FSDK-GEVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGG 471 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486 GLGL IA ++ GG+ + S+ +G P R+ IPE Sbjct: 472 TGLGLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQRKASIPEQED 523 >gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 2109 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 18/299 (6%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRAEEENLAKSRFLASMSHE 259 Y++ K Q + L E AK +++ R AE EN AKS FLA+MSHE Sbjct: 1569 IYVSLSARKVLDASGQVQYYEGSLTDITERKAKEAAEQARHEAEAENEAKSMFLATMSHE 1628 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N ILG +++++ + NE I I+ +GQ LL+++N ILD S+IE+G+ Sbjct: 1629 IRTPMNGILGMAQLMKQGQLNSEQNEQ----IDTIYNAGQTLLSILNNILDYSKIESGQL 1684 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL E + D++ E + + AQEK+++I I+ +L +V D + + Q+++NL SNA Sbjct: 1685 ELEEKPFLIQDVMDEIYNLFKPVAQEKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNA 1744 Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT G + ++ +I+D G GI E + F Q +I Sbjct: 1745 LKFTHQ-GYIRISCEGLPDTQDKLKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRY 1803 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--------ILPNTRVLNFIPEDNH 486 G GLGL I + I+ G+ S +G LP +P+ + Sbjct: 1804 GGTGLGLAITRQIIERLNGEIGFESTEEQGTTFWFELSFPITDELPAEVANVPMPKPST 1862 >gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 743 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 155/362 (42%), Gaps = 11/362 (3%) Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176 G W + T A+LL A+ ++ A+F ++ L Sbjct: 235 NGQTWLVYTEKTSYPQGWAIYYAVPYASLLKAMVKQTGIQLVIVAALFALLVYLLKRLIE 294 Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + + + + ++ +E + L++++ + Sbjct: 295 TNLAGPVRNIAASIAGIRPLEAESDIPLEQAGNIT-ELHGIISEVNHLMSQVRQSHHQLT 353 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R AE N KS FLA+MSHELRTP+N ++G ++++ + + N EY+ I Sbjct: 354 AARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTEL----NAEQAEYLASIEH 409 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S L+ L+N+ILDLSRIEAGR EL L +++ + L +A+ K +++ + D Sbjct: 410 SADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSAQARLKWLQLSVEFDR 469 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411 +L V D RQ++LNL NA+KFT G V VT +S ++ ++D G G Sbjct: 470 NLPQLVLGDSLRFRQILLNLTGNAIKFTDQ-GAVLVTAALSSADEDSVTLHLCVQDTGIG 528 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + F Q + G GLGL I++ + GG+ S+ G Sbjct: 529 ITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLWAESEPGIGTTFHLE 588 Query: 472 LP 473 LP Sbjct: 589 LP 590 >gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 676 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 145/293 (49%), Gaps = 4/293 (1%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L +A L+ + + + EK L + + AE + Sbjct: 386 LLISIAEQLAIAIHQSELMRSLQDAAHRLTQEKHTLEQRVIERTMALRDALLAAEAASRL 445 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S FLA++SHEL TPL ++G S + +G L+ + ++Y+ IH SG+HLL++IN+I Sbjct: 446 RSEFLATISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLDMINDI 504 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEK 366 LDLS+IEAG+ L+ + SLI + I L +A ++ N+++ +IDP AD Sbjct: 505 LDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALSEKVNLKLDLQIDPRRDRFTADAA 564 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + Q++ NLL+NA+KFT GG V + V W ++D G GI E ++P + F Q Sbjct: 565 RIEQILWNLLTNAIKFTPEGGNVTLRV-WVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQ 623 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + +G GLGL + + ++ H G+ + S + G +P + Sbjct: 624 LDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIPYQEIRE 676 >gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1582 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + N + + I + + + ++++A+ N AKS FLA+MSH Sbjct: 791 WMLSVGKVFERDNQGRAIRISGINVNIDAAKQLEKELELSKQKADSANRAKSDFLANMSH 850 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G S + + + + YI ++RS + LL +IN+ILD S+IEAG+ Sbjct: 851 EIRTPMNAIIGMSHLALETDL----DRKQRNYIDKVNRSAESLLGIINDILDFSKIEAGK 906 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 ++ + SL D++ + ++ +A++K IE+ + SL D + QV+ NL + Sbjct: 907 LDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLPFYFNGDPLRLSQVLTNLSN 966 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + V S I D G G+++ + + +F Q + Sbjct: 967 NAIKFTEQ-GEVQIKVYAHSINETNIELAFEISDTGIGMSKEQQLKLFKAFSQADSSTTR 1025 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+Q+++ GG S+ G ILP Sbjct: 1026 KHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPL 1066 >gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] Length = 587 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583 >gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis HAW-EB4] gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 929 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 169/369 (45%), Gaps = 23/369 (6%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLFFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRLTGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA+E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I RS +LL++IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYIRTIERSATNLLSIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L SL + + E + +L A+EK +E +D + V D Sbjct: 355 DILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVIDVDSRIPEDVTGDA 414 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 Q+I NL+ NA+KFT G ++ + + + ++ I D G GI + + ++ Sbjct: 415 MRFSQIITNLVGNAIKFTDKGSVQLKLQLEEIKEQKVHLRCEIIDTGIGIDKQQQSSLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVL 478 +FGQ +I G GLGL I + ++ GGQ S+ ++G LP + Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFWFSLPLNISQYPIH 534 Query: 479 NFIPEDNHE 487 + +P E Sbjct: 535 DTLPLATLE 543 >gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 747 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 2/268 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + ++ I + + + A N AKS +A++SHELRTPL Sbjct: 466 RLTRIDLGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLT 525 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+GFS+V+ G L N++ ++Y+ IH GQ L N+INE+LDLS+I++G ++S Sbjct: 526 TIIGFSDVLLKGKAGDL-NDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEY 584 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 I++ ++ + A +K + I KI+ + ++ADE ++ ++ NLL N+VKFT Sbjct: 585 IAVHELFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFT-D 643 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + + S+ D+G GI ++ + F Q G GLGL + Sbjct: 644 DGSITIKLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLV 703 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ HGG + S++ G + +P Sbjct: 704 KRLVELHGGNIWVESEVGTGSKFTFTIP 731 >gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 617 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 3/272 (1%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + ++L+ + + + + +++++K AEE N AKS FLA+MSHELR Sbjct: 72 ILEQRVEERTAELLTAKNLAEQAQKMADADRVKAEQSQKIAEEANYAKSHFLANMSHELR 131 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+G+SE+++ + + + I +G+HLL LIN +LDLS+IEAGR EL Sbjct: 132 TPLNAIIGYSEMLQEDAEDLNQESCVLD-LKKIQGAGKHLLGLINTVLDLSKIEAGRMEL 190 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 L ++ E + +Q ++K + D +L + D +RQ++LNLLSN K Sbjct: 191 YIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLGQMHTDLTKLRQMLLNLLSNTAK 250 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT G++ + V G I DNG G+ E + + F Q + G GLG Sbjct: 251 FTEQ-GQIRMEVRR-DGEWINFCIADNGIGMTEEQQKKIFQPFTQADASTTRRYGGTGLG 308 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 L I + GG + S+ +G + LP Sbjct: 309 LAITKQFSEMMGGVIWVESEFGQGSIFMMSLP 340 >gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 631 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 153/323 (47%), Gaps = 9/323 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L ++ L + ++ L + + + + +S Sbjct: 151 FLLTTEAIKILLLIIGVLWVAFRLLVNPLQLLSGAVSDFSGGKVPSKVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 AEK + + ++ ++ +E R RAE N KS FLA+MSHE+RTP+N I+G + ++ Sbjct: 211 VLAEKYNRSVEKVREHQTELEEERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLG 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P KE++ I S L+ +I++ILD S++EAG+ EL + L I+ + Sbjct: 271 DTKLDP----QQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++A++KN+++ IDP L V D ++QV+ NLLSNA+KFT G ++ V + Sbjct: 327 ISLHTVKAKQKNLQLLSDIDPHLPAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVEL 386 Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + D+G GIA+ + F Q + G GLGL I ++ Sbjct: 387 TRQEHDVAMIRFRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNL 446 Query: 452 HGGQFLIRSKLREGVEVIAILPN 474 GG+ + S+L G +P Sbjct: 447 MGGEIQLTSELGLGSCFEFSIPV 469 >gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 659 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 14/395 (3%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + W + I + + A L+AL+IS Sbjct: 114 DRPHRERAVYADWSNVTVAVPIRSEDGVVGTVSITASLNQVWQAIAWNLALSLLALTISF 173 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT---ALSFFTYITYHLFKS 210 + F + + + + +L+ A + D S + + L + Sbjct: 174 VIAFAIASKMLAAILAALGSLTDTAQYVANSKDYSRHAKIYSDDEIGRLGDTFNSMLAEI 233 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++D L ++ ++ AE + AKS FL++MSHELRTP+NAI+G Sbjct: 234 AERDRQLADQRDHLEDTVQERTQALSVAKEAAEAASRAKSTFLSNMSHELRTPMNAIIGM 293 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + +++ + PL + +G I + HLL L+N++LDLS+I+A R L ++A S+ + Sbjct: 294 TYMLKRQNADPLQVDK----LGKIDNAANHLLQLLNDVLDLSKIDAERMTLEQTAFSIPE 349 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + +L RA+ + +D L + D ++QV+LNL NA+KFT G Sbjct: 350 LAADVASLLTPRAESARLRFILDVDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTER-GE 408 Query: 389 VHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V + +S++D G GIA I + F Q + G GLGLPI Sbjct: 409 VRIVARVVEDDEKAVHIELSVRDTGIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLGLPI 468 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 Q ++ GG+ + S G E + R Sbjct: 469 CQRLVRLMGGEIQVVSTPGAGSEFTFTVRLQRAEP 503 >gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1055 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 11/313 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 AI D + + + + + + + I ++A Sbjct: 360 VAWAIEGKKEFDTAFRVVWQDSSVKYIKALARVHNDSQGSALFMIGTNWDITHEKLASEK 419 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E +K+A+ N AKS FLA+MSHE+RTPLN ++GF+++++ + NET ++YI I Sbjct: 420 LKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSKL----NETQQKYISTI 475 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 ++S LL++I ILD S+IEAG+ +L + L+++ ++ I +++ +A +K++E+ I Sbjct: 476 YQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAHKKDLEVLLHI 535 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY--ISIKDN 408 D + VW DE MRQV++NLLSNA KFT G + + + +++D Sbjct: 536 DNDIPRFVWIDEVKMRQVLVNLLSNATKFTTE-GEIELKIDLQERLDEEMVVLRFAVRDT 594 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA + +F Q + G GLGL I+ ++ G + L+ S G Sbjct: 595 GIGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVESITGRGSVF 654 Query: 469 IAILPNTRVLNFI 481 +P ++ Sbjct: 655 YFDIPVKATVDAA 667 >gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] Length = 587 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis] Length = 579 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + E E++ I + + L +L Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +L+ +A EK I + + V D Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKADEKGISLQLNVPKDPQYVSGD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL++NA+ +T GG V + V Q I + D+G GI + EIP + F Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDIQ-IEVADSGIGIQKEEIPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ + S+ G L Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTL 571 >gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 913 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 173/423 (40%), Gaps = 29/423 (6%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 ++A A+ G++ + + Y+ + +A + + Sbjct: 348 FFSIASGASVALFGREFLQVKEHMPRTYLMLNAYIAICLAC--LVAVFFMDAHAAAKANV 405 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVF-----LSFFPVVVALSTQ------AIMSMHVL 185 + A LL ++ + + P + V+ + + VL Sbjct: 406 VIAVTGAFLLFGTALVRIRHRYRPAIYYLIGQGAVIVGVMFTVLASNNLVPYFYKAPDVL 465 Query: 186 DIS----LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDET 238 ++ L + +S V+ +AE + ++ + D++ Sbjct: 466 KVAGAFELLFFSFGLADLINVLKAREARSAVEADVARAEAEARQTYIQQLDTSNRQLDKS 525 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + A+S FLA+MSHE+RTP+N +LG E++E + N+ K+ + RSG Sbjct: 526 NQELAAAIQARSEFLANMSHEIRTPMNGVLGMLELVENANL----NDVQKQQLEIARRSG 581 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q LL LIN+ILDLS+IE+G+ L SL D + + + + +EKNI + Sbjct: 582 QTLLALINDILDLSKIESGKLALESLPFSLQDFLSDLRELYGKQLREKNITCTLACAEDV 641 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAE 414 V D + QV+ NL+SNAVKFT GG V ++V + + D G GI + Sbjct: 642 PEWVAGDRIRLWQVLTNLVSNAVKFTKDGG-VTISVNLLQEGQEERLSFQVTDTGIGIPK 700 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q + G GLGL IAQ+++ GG +RS+ EG +P Sbjct: 701 AAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLKLMGGAISVRSEEGEGSTFAFSMPL 760 Query: 475 TRV 477 R Sbjct: 761 LRA 763 >gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] Length = 545 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 311 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 367 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE + L+ + + I+ + ++L +A EK I + + Sbjct: 368 RMQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQVNGLKRV- 426 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 427 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVEL-LEDKYNAYIKVSDTGIGISKEEIPR 485 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 486 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 541 >gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 765 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 133/251 (52%), Gaps = 8/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E L E ++ AE + KS FLA+MSHE+RTPLN ++G + ++ + + Sbjct: 364 VTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL----S 419 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EY I SG LL LIN+ILD S+IEAGR EL E A L ++ E + ++ RA+ Sbjct: 420 DEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAR 479 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 EKN+ + + + ++ V D + MRQV+LNL+ NA+KFT G + V V G Sbjct: 480 EKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALL 539 Query: 403 ISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + + D G GI+ GE+ + F Q + G GLGL I + ++ GG +++S Sbjct: 540 LEVAVADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKS 599 Query: 461 KLREGVEVIAI 471 + G Sbjct: 600 QPGRGSTFSFT 610 >gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] Length = 587 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Rhodospirillum rubrum ATCC 11170] Length = 620 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 167/332 (50%), Gaps = 11/332 (3%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + +P + L ++ + + + + + + Sbjct: 292 AGLFFTWATVPGSPLLVTVSASYDGLLRSWWQVLPYHLGAIACIILVILALVLKVHRQIR 351 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ + ++ + R+ +EE N AK+ FLA+MSHELRTPLNAI+G Sbjct: 352 HLNGLIVALSNRE----------AALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIG 401 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FS+++ G L + ++Y DI+ S HLL+LIN+ILD+++IE+G Y L E +L Sbjct: 402 FSDMLANGIHGALAD-RQQDYARDINLSALHLLDLINDILDVAKIESGGYLLHERPCNLA 460 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 I+R ML R +EK + + + V ADE+ M+QV+LNLLSNAVKFT GGR+ Sbjct: 461 AIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRI 520 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V++G G G + + D GPGI + VL F Q + +G GLGLP+A++++ Sbjct: 521 TVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALV 580 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 H G + S+ +G V LP RVL Sbjct: 581 EKHEGALRLDSQPGQGTRVSVTLPAARVLPPQ 612 >gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 587 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472] gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC 12472] Length = 664 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 130/271 (47%), Gaps = 11/271 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + L+ A E R AE N AKS FLA MSHE+RTPLN ++G +++++ + Sbjct: 2 EARSQALQQANVQLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRL-- 59 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + Y+ +HRSG+ LL +I++ILD S+IEAG++EL L +V E + L Sbjct: 60 --DDRQRHYVSVVHRSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAP 117 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A K +E+ + V D K + QV+ NL+ NA+KFT G V V Sbjct: 118 VAYGKGLELMCALPLMPVEVVGDGKRLGQVLTNLVGNAIKFT-ESGHVLAKVDRAGESDA 176 Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 IS+KD G GIA + + F Q + G GLGL I+Q ++ GG+ Sbjct: 177 GVTCRISVKDTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIE 236 Query: 458 IRSKLREGVE--VIAILPNTRVLNFIPEDNH 486 + S+ G E LP P Sbjct: 237 LESEPGSGSEFHFTLTLPRASDSQLCPPAED 267 >gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 587 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG------ 191 LLI L +SA+ L Y V P+ + LD+ + G Sbjct: 174 IFSAFLVLLIGLGLSAVFAHRLMYDV---TRPITHMKKMVDRIRRGHLDVRIEGKMHGEL 230 Query: 192 --MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + ++ + + I ++ + + +LE+ D +KRA+E K Sbjct: 231 DSLKSGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 290 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + ++ + +Y+ I +S +LL++I +IL Sbjct: 291 SEFLANMSHELRTPLNGVIGFTRQMLKTSLTA----SQTDYLQTIEKSADNLLSIIKDIL 346 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L + + E + + A EK +E+ K+DP + + D + Sbjct: 347 DFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKVDPKIPLGLVGDPLRI 406 Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ N++KFT G V + ++D G GI+E + + +F Sbjct: 407 QQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQAFS 466 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 467 QADASISRKYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 680 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 118/424 (27%), Positives = 188/424 (44%), Gaps = 4/424 (0%) Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 G + + + +++ V L +++ + + Q Sbjct: 257 LAGWYNDRLKRILETAAVSVVVTLLALLALRQLGRLETTTQALRASERR---SQALFDSS 313 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + ++ L+ P + L A ++ + + S + Sbjct: 314 FQVMGLLSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDELATAFRHSIEKAA 373 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 S + + A +F + E D+ +E A+ L+ + Sbjct: 374 SGRFVRYETDVVTDGATRVMDVTIKPVFDEKGTVTVLVVEARDITERVEAAERLAAALDQ 433 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 N AKS FLA+MSHELRTPLNAI+GFS+++ E GPL + Y++Y+ + SG+H Sbjct: 434 AE-AANRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRH 492 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL+LIN++LD+S++EAGRY L ES + D + C + + A + + P L Sbjct: 493 LLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCPPCLPK 552 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + ADE+ +RQV+LNLLSNAVKFT GGRV V+ G I+++D G GI + + Sbjct: 553 LLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTGIGIPADALARI 612 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 L F Q +I + G GLGL I + +MA HGG + S+ G P RV Sbjct: 613 LEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAATIRFPVCRVAPP 672 Query: 481 IPED 484 + D Sbjct: 673 VATD 676 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 13/241 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+N ILGF+E++ + N +E + I + G++LL+LI Sbjct: 541 NQAKSEFLANMSHEIRTPMNGILGFAEILLQTNL----NSQQEESVRIIQQCGENLLDLI 596 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILDLS+IE+G+ L ++ SL ++ E + +++ + EK +EI I L + D Sbjct: 597 NDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGD 656 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEI 417 +RQV+ NLLSNA KFT G V V V S+ D G GI ++ Sbjct: 657 PTRIRQVLNNLLSNAAKFTHE-GHVEVKVNGQKDHSVETDSFTLVFSVSDTGIGIPREKL 715 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + SF Q + G GLGL I++S++ GGQ + S++ G + +P V Sbjct: 716 DLIFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIPGLPV 775 Query: 478 L 478 + Sbjct: 776 V 776 >gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 917 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + + AE N AKSRFLASMSHELRTPLNAI+G+SE++ E + Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I +G+HLL+LIN+ILDLS+IEA + E+ S+ D++R+ + Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 E+ Q + L + +D+ +RQ + NLLSNA KFT GGRV + V Sbjct: 516 RNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRADRDWL 574 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G++ + + +F Q + G GLGL I +S GG + S+ Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634 Query: 462 LREGVEVIAILPN--TRVLNFIPED 484 + +G +P R + P + Sbjct: 635 VGKGSVFTIEVPAQCEREADGSPAE 659 >gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466] Length = 632 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 10/335 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F+L +V L + ++ L + + + + +S Sbjct: 151 FLLTTEAIKILLLMVGVLWVAFRLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVS 210 Query: 217 CQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 A+K + + ++ ++ + R +AE N KS FLA+MSHE+RTP N I+G + ++ Sbjct: 211 LLAQKYNRSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLS 270 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P KE++ I S Q L+ +I++ILD S++EAG+ EL+ ++ + Sbjct: 271 DTKLDP----QQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDV 326 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I + ++AQ+KN+++ IDP L V DE ++QV+ NLLSNAVKFT G ++ V++ Sbjct: 327 ISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSL 386 Query: 394 GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D+G GIA+ V F Q + G GLGL I ++ Sbjct: 387 HEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHI 446 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG + S+L G +P T V++ +P Sbjct: 447 MGGDIKLTSELGLGSCFDFTIPLT-VVSGLPTYTD 480 >gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1433 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 19/349 (5%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +++ L +A L + + Q + + + T+ Sbjct: 778 FTGAMTLPVPATLSFAELLGLIHPLDREAFQRAHQTAIANRGSFQIEHRIRVADAAQTWR 837 Query: 207 LFKSNVKILSCQAEK-------DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 ++ +++ + I++ + A++ + ++ AE AK FLA+MSHE Sbjct: 838 WYQVQASVITDANNQPIRLIGMSFDISDRKQAEAELLQAKETAEAATRAKGDFLATMSHE 897 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NA++G + ++ + P ++Y I +G+ LL++IN+ILD SRIE+G Sbjct: 898 IRTPMNAVIGMTGLLLNTPLSP----EQRQYGETIRNAGESLLSVINDILDFSRIESGHL 953 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378 +L E L V E I +L RA EK++ + +IDP + +V AD +RQ+++NL++N Sbjct: 954 DLEEHPFELPHCVAEVIDLLANRAVEKSLHLEVQIDPGVPAVIVADSARLRQILVNLVAN 1013 Query: 379 AVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 A+KFT G V + V + + S++D G GIA ++ + F Q + Sbjct: 1014 ALKFTDQ-GEVMIRVKSVAVSPDGQQQTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSST 1072 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I++ + GGQ ++S+ G LP L I Sbjct: 1073 RRYGGSGLGLVISKRLCERMGGQIRVQSRAGVGSTFSFTLPVRVSLTPI 1121 >gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 830 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 99/290 (34%), Positives = 161/290 (55%), Gaps = 1/290 (0%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 +SL + + + +DL +E +++AE + Sbjct: 530 LSLTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDLVRAKEQAELAS 589 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +KS FLA++SHELRTPLNAI+GFSEV+ GPL N Y+EY GDI +SG+HLL +IN Sbjct: 590 RSKSEFLATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIVQSGRHLLAVIN 649 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +ILD+S+IEAG+ L + + ++ + +++ RA+ ++ + ++D L + D + Sbjct: 650 DILDVSKIEAGQMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVDKDLPIIDGDRR 709 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 Q+++NLLSNA+KFT GG+V + + + ++D G G++E EI L F Q Sbjct: 710 RCLQILVNLLSNAIKFTPEGGQVTIGASRENDG-IRLKVQDTGIGMSESEIQVALEPFRQ 768 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ +G GLGLP+A+S++ HGG ++ S+ EG EV LP + Sbjct: 769 VDGSLSRQYEGTGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLNQ 818 >gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] Length = 889 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 81/260 (31%), Positives = 126/260 (48%), Gaps = 5/260 (1%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ AE+ + KS FLA+MSHE+RTP+N ILG ++++ + M N+ +Y+ Sbjct: 514 EQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPM----NDKSTDYL 569 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 S + L +IN+ILD S+IEAG+ L + L +++ L + AQEKNI + Sbjct: 570 KKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNIYLK 629 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 K D +RQV LN++ NA+KFT GG V V T + D G G Sbjct: 630 FKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGG-VTVEFKLTDDEQVCAIVSDTGIG 688 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + + F Q + G GLGLPI +S++ G + S+ G + Sbjct: 689 IPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQFYVY 748 Query: 472 LPNTRVLNFIPEDNHESTQY 491 LP + DN E+ + Sbjct: 749 LPLEQADKIPSTDNTENLDF 768 >gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 969 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 160/307 (52%), Gaps = 12/307 (3%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRF 252 + F + V L+A E+ K +E ++ AE+ N AKS F Sbjct: 407 VIGFISAAFKEDRALTVAEKRIFLLLATLLANSEIRKKYEEELIKAKQEAEKANQAKSIF 466 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLN I+GF+ +++ + +E ++Y+ I +S + LL +IN+ILDL+ Sbjct: 467 LANMSHEIRTPLNGIIGFTNLLKETKL----DEKQEKYVSIILKSSELLLEIINDILDLA 522 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 +IE+G+Y+L +L ++ +++ + +A+EKN+E +ID +S + D ++QV Sbjct: 523 KIESGKYQLEPLETNLKMELQSSLLLYEAKAKEKNVEYEIRIDKEISDCLILDSVRLQQV 582 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 + NL++NA+KFT GG V V V S S+ D G GI + ++ + F Q Sbjct: 583 MFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIRFSVIDTGIGIPKEKLEKIFEPFEQA 642 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S+++ G GLGL I+ I++ G + ++ S+ +G L + + + Sbjct: 643 SVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEEEKGSHFYFDLKLKKCSKKEITQDMK 702 Query: 488 STQYKCY 494 + + K Y Sbjct: 703 TIKSKKY 709 >gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-9066] gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western North America USA6153] gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia 94] gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI] gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis str. CI] Length = 587 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] Length = 558 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + FLA++SHEL+TP+ +I GFSE + M N + + ++ I + + Sbjct: 324 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 381 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LI ++LDLS+IE ++L+ + + +++ E ++L+ ++Q+K I + + S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVL-RHVS 440 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP + Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 499 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G + S++ EG LP + Sbjct: 500 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 554 >gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] Length = 1084 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 10/328 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + + + + + +S + D ML ++++ + L + A + Sbjct: 489 MLAGALAMYKSSARKVTLSDFIKDNFFKVMLISSIAVAVVLLTILMLLQKARKAEAAARK 548 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 E + ++AE N AKS FL++MSH++RTP+NAI+GF+ + Sbjct: 549 AASDTQE-LNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI---D 604 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + K+Y+G S HLL+LIN++LD+SRIE+G+ L E ++L D++ + ++ + Sbjct: 605 DTDRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQ 664 Query: 343 AQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 K +E++ +D + V+ D+ + Q++LNLLSNA+KFT GG V V V +G Sbjct: 665 IYAKQLELYMDVMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVR 724 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 IKDNG G+++ + F + + S QG GLG+ I ++I+ GG Sbjct: 725 GCGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTI 784 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484 +++ +G E +P P + Sbjct: 785 EVQTAQGKGTEFTVCVPMRAQTEQRPVE 812 >gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 587 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 12/317 (3%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + I + +AT L L +S Q L + Sbjct: 252 NRVPVWQPSHIQVLQSIATYLGAAIAHAILLDQSRQLATRLQLANQTL----RQKNKELE 307 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + R +AE N KS+FLA+ SHELRTPLN I+GF +++ N E +++ + +R Sbjct: 308 QARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLVLDGM--AENREEELDFLQEAYR 365 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 S HLL LIN++LD+++IEAG+ +L L + ++ L+A +K +++ + Sbjct: 366 SALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQASQKGLQLSFHLPN 425 Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGI 412 + D + + QV+LNL+ NA+KFT G V V G I + D G G+ Sbjct: 426 TSDQILLLGDYQRLLQVMLNLVGNAIKFTPK-GSVTVRADILPGNPGLARIRVIDTGIGV 484 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAI 471 + + + +F Q + G GLGL I+Q ++ GG+ S G V Sbjct: 485 SLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGEGLGSTVTFT 544 Query: 472 LPNTRVLNFIPEDNHES 488 +P R + N E+ Sbjct: 545 VPLYRKPLLSGDPNPEA 561 >gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] Length = 561 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + FLA++SHEL+TP+ +I GFSE + M N + + ++ I + + Sbjct: 327 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLNIILKESER 384 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LI ++LDLS+IE ++L+ + + +++ E ++L+ ++Q+K I + + S Sbjct: 385 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVL-RHVS 443 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP + Sbjct: 444 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRI 502 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G + S++ EG LP + Sbjct: 503 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPKS 557 >gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 656 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + E + A + + R+ +E+ N AKS FLA MSHELRTP+N Sbjct: 244 LTDLARHINNLACALEQSGQEQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNG 303 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E ++ N+ EY S +HLL +IN+ILD SRIE G EL Sbjct: 304 VLGMLQLLETTSL----NDEQSEYAALATESTEHLLKVINDILDFSRIERGALELEAIPF 359 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA 384 +L+++++ I + Q AQ++ +++ P L V D +RQ+++NL+ NA+KFT Sbjct: 360 NLLELLQGSIQVFQHSAQQRGLQLLLDAQPGLERLEVRGDPTRIRQILVNLIGNALKFTE 419 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + V W Q + +++D+G GI + + +F Q +I G GL Sbjct: 420 E-GHIRVETHWQPLDDQVLWFTCAVRDSGIGIDGERLEHMFDAFQQADTSISRRYGGTGL 478 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLPIA+++ GG S+L +G +P Sbjct: 479 GLPIARTLAERMGGTLRAESQLGKGSVFTLEIPL 512 >gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 777 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 159/340 (46%), Gaps = 16/340 (4%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 +F + + I + V ++ + +++ + H +S Q E + Sbjct: 183 LFWGQVRLSAFIVLTIIFLLLVPVATMTLSINRSMARLIHAIRHTGRSGDLSTQVQFEGN 242 Query: 223 DLIAELEVA---KSLSDETRKRAEEENLAKS----------RFLASMSHELRTPLNAILG 269 ++A + R +E A++ +FLA+MSHELRTPLNAI+G Sbjct: 243 AEGEMRQIALSFNQMLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIG 302 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +SE + E + N ++ ++ + I+++G HLL+++N+ILD+S+IEAG+ +L + Sbjct: 303 YSE-MTQEDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDIT 361 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + + ++ +++ + + P + + AD+ +RQ+++NLLSNA KFT G + Sbjct: 362 QLLHDVVAIMTPLMEKQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQ-GEI 420 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V G +S+ D G G+ ++ + +F Q + G GLGL I+Q Sbjct: 421 TVEV-QNHGEHIVVSVHDTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFC 479 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GG + S +G LP + + E T Sbjct: 480 HMMGGSIRVESTPGKGSHFTVQLPRKTLRPPAQQPAGEKT 519 >gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 592 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 141/316 (44%), Gaps = 10/316 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 ++ V +L + + + + +F I K+ + Sbjct: 275 WSVGVVTPLWYVGSLIQSVYVKQGLFAMISIAFILFISAFIALILLSWNKT------LED 328 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E +ELE + K+ +E + K+ F++ +SHEL+TPL A+ SE + Sbjct: 329 EVKSKTSELERSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRE--- 385 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + E +E + I R+ +++++LD+SRIE+G+ + + +++ +I+ + + Sbjct: 386 SECSREIKEEMLDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNV 445 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A++K+I+I + ++ D+ + ++ +NLL+NA+KFT G V V V Sbjct: 446 TKHAKDKSIKIMVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVE-DHED 504 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 SIKDNG GI E + + F Q G GLGL I + I+ GG+ + Sbjct: 505 YLQTSIKDNGIGILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLE 564 Query: 460 SKLREGVEVIAILPNT 475 S+ +G LP Sbjct: 565 SETGKGSTFTFRLPKE 580 >gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 571 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 147/310 (47%), Gaps = 24/310 (7%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + T +TY L + + L + S +ET + + Sbjct: 256 LGTLATTYNKMAKALTYTLDERARVARELRDLNRSLEDRIRERTSQLEETNRDLSRASRH 315 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLNAILGF+++I G + NE +E + DI +G+HLL LIN++ Sbjct: 316 KSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPNE-LRESMEDIRINGRHLLRLINDV 374 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS+IEAG+ L+ SL ++ I + A EK +E+ +++ L D K M Sbjct: 375 LDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRLELVARVEADLPPALGDSKRM 434 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG-----------------------WTSGRGQYISI 405 QV++NL+ NA+KFT GG V+VT TS IS+ Sbjct: 435 TQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQPETRNPKPETPTSPDFIEISV 494 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI E+ ++ F Q +I G GLGL IA+ ++ H G S++ G Sbjct: 495 ADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIAKRLVEMHRGSIWADSQVGRG 554 Query: 466 VEVIAILPNT 475 +P Sbjct: 555 STFYVRIPLR 564 >gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 1175 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ ++ + E + AEE + KS FLA+MSHELRTPLN I+G S + + + Sbjct: 523 ISDRKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMSYIALNQ----DTD 578 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ IH SG LL +IN+ILD S+IEAG+ ++ +L D++++ + L+A Sbjct: 579 PRIKNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDMLKKLSDFIHLKAY 638 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 EK++E+ D + + V D + Q++LNLLSN++KFT G + ++V + Sbjct: 639 EKDLELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFT-DHGEIEISVEALILDAADS 697 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +I+D G G+ + E+ + SF Q I G GLGL I + ++ G + Sbjct: 698 KLVFTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITKQLIELMDGNISVE 757 Query: 460 SKLREGVEVIAILPN 474 S+ G LP Sbjct: 758 SEKGVGTTFKVELPL 772 >gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] Length = 587 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583 >gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM 15053] gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM 15053] Length = 1117 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 132/278 (47%), Gaps = 9/278 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D+ E E + A N AKS+FL++MSH++RTP+NAI+G +EV + Sbjct: 577 DEQRYEEEQQRQALQTALDNARAANEAKSKFLSNMSHDIRTPMNAIVGMTEVAKAHLG-- 634 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +E + I RSG HLL LIN++LD+SRIE+G+ LS +L ++V E +++ Sbjct: 635 -EQDRVRECLDKISRSGSHLLGLINDVLDMSRIESGKMSLSAEPFNLAEMVTEAAELVRP 693 Query: 342 RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 +A+ K I I V DE +RQV +N+LSNAVK+T GG V V V Sbjct: 694 QAENKQIHIDIHLYGLKNEKVIGDELRLRQVGVNILSNAVKYTPEGGSVEVEVRQAKSSR 753 Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + D G G+ + + + F + + S G GLG+ I ++I+ G Sbjct: 754 KGYQSFIFRCADTGIGMTQEFLEKLFLPFERAKDSTDSKVVGTGLGMAITKNIIDLMNGD 813 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 + S+ G +P E E +C Sbjct: 814 IQVESEPGAGSVFTVTVPLKLQEEVQGEGPKEWKDARC 851 >gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1] gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1] Length = 587 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583 >gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] Length = 587 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583 >gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] Length = 587 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583 >gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] Length = 929 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 165/351 (47%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LLI L +SA+ + L Y V P+ + + LD+ + G Sbjct: 174 VFSAFLVLLIGLGLSAVFAYRLMYDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 228 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ + +Y+ I +S ++LLN+IN Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIEKSAKNLLNIIN 343 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E + + A EK +E+ KIDP + + + D Sbjct: 344 DILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDS 403 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + ++V S + + ++D G GI+E + + Sbjct: 404 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQKDDVVELQFMVRDTGIGISERQQAQLF 462 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 17/338 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + + L +A++ + F +L + + + L+ +S Sbjct: 205 LAISMAMTRLRSAAINQEEIQREGMKLFSSPNQSLLDWRWIFGDPVSLVLSVSCTPVVSE 264 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + I S L DE RK A+E+N AKS FLA+MSHE Sbjct: 265 NI---RGRLWAFTDITSLHITNSQLSEL----NIELDEKRKIADEQNQAKSAFLANMSHE 317 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N ++G + ++ ++ + ++Y+ I SG+ LL+LIN+ILD S+IE+G+ Sbjct: 318 IRTPMNGVIGMTSLLISTSL----TDEQQDYVETIRISGETLLSLINDILDFSKIESGKM 373 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 EL SL ++ E +L ++A EK +++ ID + + D +RQ+++NL+SN Sbjct: 374 ELETQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPSEIIGDVTRLRQILVNLVSN 433 Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 +KFT G + +++ G S+KD+G GI + + + SF Q + Sbjct: 434 GIKFTEK-GEILISIELLEKAGSIYTLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRK 492 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+Q ++ G SK EG I + Sbjct: 493 HGGTGLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTI 530 >gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] Length = 587 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKR-A 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPKS 583 >gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 823 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 10/285 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 L +S + QA EL + E RK AE N AKS FLA+MSHE+R Sbjct: 386 RYEARLRESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIR 445 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+ AILGF+E + LN E + I R+G+HLL LIN+ILD+S+IE+G +E+ Sbjct: 446 TPMTAILGFAE----QVSASLNRPEDCEALSIIRRNGEHLLKLINDILDISKIESGLFEI 501 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 ++ L ++ + + + +A +K I + ++ + D ++Q ++NLLSNAV Sbjct: 502 EKTTCDLRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAV 561 Query: 381 KFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT GG V ++V T + I D G GIA + + F Q ++ Sbjct: 562 KFTEQGG-VDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFG 620 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I++ ++ GG ++S L G LP ++ + Sbjct: 621 GTGLGLAISKRLIELMGGDLQVKSILGSGSSFTITLPTGKISHSA 665 >gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 792 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 1/290 (0%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + A ++ +S + E + +L + + RAE N AK Sbjct: 495 TVITAADVTAIRRQEVERQRSADSLRKTVDELEASQEKLSLLARKYEIAMTRAEAANQAK 554 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLNAI GFSE++ E GPL +E YK Y DI +SGQHLL+LIN+IL Sbjct: 555 SEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGYAHDILKSGQHLLSLINDIL 614 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+++IEAG+ L A+SL ++ + I +++ +AQ+ + + + + + AD +G++ Sbjct: 615 DMAKIEAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTLSLE-AGDVPEIEADYRGLK 673 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 QV+LNL+SNAVKFT GG + V+V + I++ D G GIA ++ + F Q Sbjct: 674 QVMLNLISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGIGIAAADLARLAQPFEQVEG 733 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 QG GLGL + +S++ HGG+ + S+ EG V +P R + Sbjct: 734 QHSKTTQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSFDIPIRRPVQ 783 >gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 821 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 164/352 (46%), Gaps = 11/352 (3%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + LS LP ++ L ++ SL +L F+ Sbjct: 226 IVLEGLSGASLPRVNLGISRVDIMVLVAAPVVFQGR---SLGVLLLAYTDDFSQRQRMQV 282 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +S + L ++ ++ + E + +S F+A+MSHELRTPLN+++ Sbjct: 283 QSVLDALGGSLNNAMTYKMVQRQALKLEQANQELLEADRLRSEFVANMSHELRTPLNSVI 342 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFS V+ L + ++ IHR+G+HLL+LIN+ILDLS+IEAGR E+ + + Sbjct: 343 GFSSVLMKNRNQSLLEKDL-NFVEKIHRNGKHLLSLINDILDLSKIEAGRMEVELRPVLV 401 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 D+VR+ MLQ +A+ KN+ + + L + D +RQV++NL+ NA+KFT G Sbjct: 402 QDVVRDTSEMLQTQAEAKNVALRVEGQLDLPYIQTDGDKLRQVLINLVGNALKFTER-GS 460 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + VG + I + D G GIAE ++ TV F Q G GLGL I +SI Sbjct: 461 VTLKVG-VESQWLRIDVIDTGIGIAEDKLMTVFEPFRQADAGTTRQYGGTGLGLAITRSI 519 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP-----EDNHESTQYKCYA 495 + G+ + S +G LP + P E E ++ A Sbjct: 520 VEMLDGRVELDSVQGQGSTFSVYLPMNSMAEKPPKPKHSEPTAEKVEHSARA 571 >gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] Length = 587 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 937 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 10/343 (2%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + L +A + ++ + + + + + + ++ G Sbjct: 349 ANTHTTILLCLGALTLATILGVYTSRWIARPILHLSQASESIAAGELNQQVEIPSVNELG 408 Query: 192 MLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 LA + + + ++L + +E E + A+ N AKS Sbjct: 409 RLAQSFNRMAQQLRDSFTTIEQTNQQLAKTNEELESRVEERTHELKEAKLTADAANHAKS 468 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN ILG+++++ ++E + I I++ G HLL LIN+ILD Sbjct: 469 DFLANMSHELRTPLNGILGYAQILARTA----SDEKQQRGIDIIYQCGSHLLTLINDILD 524 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 LS+IEAG+ EL L ++ + + +++A++K+IE + + + + ADEK +R Sbjct: 525 LSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQKSIEFIYQPPENSAMGIVADEKRLR 584 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 QV++NLL NA+KFT G V V G I+D G G++ ++ + F Q Sbjct: 585 QVLINLLGNAIKFTDK-GSVTFRVEVLLGDITNLRFYIQDTGIGMSPQQLEKIFLPFEQV 643 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + K +G GLGL I+Q + + + S+L G + Sbjct: 644 GDS-KRQSEGTGLGLAISQRFVELMASKIQVESQLGVGSKFFF 685 >gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1117 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + E ++ AE N KS FLA+MSHE+RTP+N ++G + ++ + Sbjct: 454 RDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRL--- 510 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E + + I SG+ LL +IN+ILD S++EAG+ +L + L+ +V + +L R Sbjct: 511 -SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPR 569 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--GWTSG 398 A K IEI IDP L V +D +RQV++NL NAVKFT GG + V++ G + Sbjct: 570 AHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAP 629 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI + + F Q + G GLGL I++ + GG+ + Sbjct: 630 AMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGV 689 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S + G LP + Sbjct: 690 ESAVGRGSRFWITLPLELLAPQS 712 >gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 579 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + E E++ I + + L +L Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +L+ +A EK I + + V D Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL++NA+ +T GG V + V Q I + D+G GI + EIP + F Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ + S+ G L Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTL 571 >gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] Length = 587 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++L+ + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPKS 583 >gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] Length = 587 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234] gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234] Length = 989 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + H + + A+ + +L ++ + R AE+ ++AKS FLA+MSHE+RT Sbjct: 300 LEEHRHRLEELVAKRTAKLERRTEQLRKSREELERARDAAEQASIAKSEFLANMSHEIRT 359 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ++G +E++E G +E + Y+ I S L++LIN+ILD S+IEAGR EL Sbjct: 360 PMNGVIGIAELLE----GTELSEQQRRYVSIILHSADTLMDLINDILDFSKIEAGRLELE 415 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 L D + + + L RA +K +E+ I P + + D +RQ+I+NL+ NA+K Sbjct: 416 TIPFVLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIK 475 Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V V V ++D G GI E + + +F Q + G Sbjct: 476 FT-ENGEVVVDVTLVGQGDHGAHLQFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGG 534 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GLGL IA + GG+ + SK G Sbjct: 535 TGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTF 567 >gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] Length = 937 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I RS +LL++IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPAGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + S + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] Length = 929 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LLI L +SA+ L + V P+ + + LD+ + G Sbjct: 174 IFSAFLVLLIGLGLSAVFAHRLMHDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 228 GELDSLKNGINSMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ + +Y+ I S +LLN+IN Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIENSANNLLNIIN 343 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + + + D Sbjct: 344 DILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLKIDPKVPAGLVGDP 403 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++QV+ NL+ N++KFT G + V + + ++D G GI+E + + Sbjct: 404 LRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQ 463 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 464 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] Length = 853 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 8/338 (2%) Query: 138 TIYKSATLLIALSI-SALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLAT 195 A L+ A+++ + ++ L + L + A S + I + Sbjct: 164 FFITFAGLVFAVAVLTVFMSYWLKKHITLPLRGLSEWATSVYLHKNFKARAIKRSDDEIG 223 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 L+ I+S IA + + R AE+ N +KS FLA+ Sbjct: 224 QLADSLNAMLTELSKQESIISLNHSLTAEIAVRKQTEQELINMRDSAEQANRSKSDFLAN 283 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+NAI+GF +++ + ++ +++ + S + L NL+N+ILD++++E Sbjct: 284 MSHEIRTPMNAIIGFVDIVLEGDL----DQKQSKHLMTVRNSAKDLHNLLNDILDVAKLE 339 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 AG+ EL + S+ ++ + I +L+A++K + Q+I L D ++QV++N Sbjct: 340 AGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDLPAQFLGDALRLKQVLMN 399 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+KFTA G + + V + I+D G GIA+ ++ + SF Q + Sbjct: 400 LIGNAIKFTAS-GSITIAVEQINQEQLQFIIRDTGIGIAKDKLEHIFESFTQADTSTSRK 458 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLG I++ ++ GG+ + S G L Sbjct: 459 YGGTGLGTTISKRLVELMGGKIWLESDEGVGTTFYFTL 496 >gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 598 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 100/449 (22%), Positives = 181/449 (40%), Gaps = 21/449 (4%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY--AANLSL 89 D LH I L + + + + L L Sbjct: 12 DSAVRRRLLHTALRNATRSIWMLLAAMALVVLLGWLGGRPLAGGVAAAVGGVAALMRLQL 71 Query: 90 GKKVMNSDI-KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 ++ + E WL V A+GL W L T T+Y + + Sbjct: 72 ARRHASEPPRSDAETARVVQWLDVSAAAVGLMWALCTFTVYPALDETARTLY-LVMVCGS 130 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 ++ SA M + V ++ +++ V +LA + + L Sbjct: 131 IAYSAQFMAMAGRSFTWLTLLQVGSIVVVSLVLDPVRSAALAAIAPLYGLAMLNASRELR 190 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + L E E + ++ A+ ++AKS+FLA+MSHE+RTP+N IL Sbjct: 191 TTVTESLRRGLEA-------EAVNTTLQRAKQAADAASIAKSQFLATMSHEMRTPMNGIL 243 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +++ + ++ + + SG+ LL +I+++LD S IE+G+ +L + +S+ Sbjct: 244 GALDLMRDTPL----DKRQRALVRTAVASGESLLCIIDDVLDHSTIESGKLKLDPTPMSM 299 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 + +L+ A+++ +++ +I+ + +V D ++QV+LNL+ N +KFT GG Sbjct: 300 HAVAASAAALLRSTAEQRGLKVDLQIEADVPDAVVGDASRLKQVLLNLIGNGIKFTERGG 359 Query: 388 RVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + + G + D G GI +P + F Q + G GLGL Sbjct: 360 -VTLRLSRAPAPPGMCGVRFEVADTGIGIPAQAVPKLFQPFSQVDATRSRSHGGTGLGLS 418 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+Q I+A GG+ + S G L Sbjct: 419 ISQRIVAAMGGRITVDSVEGRGSRFSFTL 447 >gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] Length = 949 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E +A+ + +++AE N+AKS+FLA+MSHE+RTP+N I GF ++++ + Sbjct: 301 EDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSL- 359 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 K++I + + + LL +IN+ILD S+IEA + + + +L + + + + +L + Sbjct: 360 ---EQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPK 416 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A EK +E++ I + V D +RQ++ NL+SNAVKFT G V V Sbjct: 417 AVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEENET 476 Query: 401 QY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +KD G GI + I + SF Q + G GLGL I+ ++ GG+ + Sbjct: 477 AVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHV 536 Query: 459 RSKLREGVEVIA 470 S +G Sbjct: 537 ESIFGKGSIFKF 548 >gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 787 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 10/258 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + + AEE +K RFLA+MSHE+RTP+NA++G + ++ + Sbjct: 247 RDITHRKKTEEALVKAKILAEESMRSKERFLANMSHEIRTPMNAVIGMTNLLLRTPLSS- 305 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + I +S ++LL +IN+ILD S+IE+G+ SL ++++ I L+ Sbjct: 306 ---EQAECVDIIKQSSENLLVIINDILDFSKIESGKITFESIPFSLHSLLKKTISTFSLK 362 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A EK++ + +D S SV D + Q+++NL+ NA+KFT G++ V V Sbjct: 363 ASEKDLSLSLSLDASCPDSVMGDSVRLNQILVNLVGNALKFTEK-GKIVVKVQLDRRTPT 421 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 SI D G GI + T+ SF Q G GLGL I + ++ GG+ Sbjct: 422 HSVVLFSISDTGIGIDAEKQETIFESFTQAGNDTTRKFGGTGLGLAITKKLVELQGGKIW 481 Query: 458 IRSKLREGVEVIAILPNT 475 ++S+L G LP Sbjct: 482 VKSELGVGATFSFALPLK 499 >gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4] gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 933 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 174/369 (47%), Gaps = 23/369 (6%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD + G L Sbjct: 184 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---THPITEMVRVVAKIREGKLDTRVDGNLI 240 Query: 195 TALSFFTY--------ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L ++ + + I ++ + + ++E+ D +KRA E + Sbjct: 241 GELDLLKRGINAMAGSLSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 300 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I +S +LL +IN Sbjct: 301 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHA----SQQDYIKTIEKSATNLLGIIN 356 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365 +ILD S++EAG+ EL +L +++ + I +L A+EK++E+ I+PS+ +V D Sbjct: 357 DILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNVSGDA 416 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 + QVI NL+ NA+KFT G VH+ + TS + + I D G GI + + Sbjct: 417 LRVSQVITNLVGNAIKFTDS-GSVHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQAQLF 475 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +FGQ +I G GLGL I + ++ GGQ S +G LP L+ Sbjct: 476 QAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPLK--LSPY 533 Query: 482 PEDNHESTQ 490 P T Sbjct: 534 PISQPLETD 542 >gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15] gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15] Length = 661 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 12/309 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + AL T + + + + F ++V E ++ +E Sbjct: 199 ITGALVTLLLSVVFSAYAAYRINRPLRQALFCAAAAMGHDTSVVEDKSHDETHQVLHTIE 258 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + +R AE + K FLA+MSHE+RTP+NAI+G +E+ + P + +E Sbjct: 259 RMVNDLKRSRDEAESASRMKGEFLANMSHEIRTPMNAIIGMTELTLETPLSP----SQRE 314 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I S + LL L+N+ILD SRIEAGR L + L + V + ++ +A K +E Sbjct: 315 NLEIIGSSAESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALDVVAPQAHGKGLE 374 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QY 402 + + L D +RQV++NLLSNAVKFTA G V + V G Sbjct: 375 LILDVARDLPEAFIGDPTRLRQVLINLLSNAVKFTAK-GEVGLKVERAPSSGTDDGVMLL 433 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++ D G GI ++ + SF Q + G GLGL I +++++ GG ++S + Sbjct: 434 FTVSDTGIGIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVSMMGGDISVKSAV 493 Query: 463 REGVEVIAI 471 G Sbjct: 494 GVGSTFRFT 502 >gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/465 (22%), Positives = 201/465 (43%), Gaps = 24/465 (5%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 + + + F + +H+ S +L + + +G T +S Sbjct: 5 RGGRNDPEAQRQVQRIFLEQSRDIHIRVDRGFSILLLIQWVAAIVMGILLTPTTWLGSFS 64 Query: 77 LIT--LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 V L + + W +++ +C+++L + G Sbjct: 65 GAVENAFVGLIFGGLFSLPAVYCVYVFPGEKWTRYVVA---VSQMCFSILFIHLSGGRIE 121 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + ++ S +++ + L + T I+ +L ISL G+ Sbjct: 122 THFHVFVSL-----AALAFYKDVGLLGVA-------SFIVITDHILRGCLLPISLYGVAE 169 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + + ++ ++ + E+ +K + R+ A + + KS FL+ Sbjct: 170 SNQWRWLEHAAWILIEDIILIIGIERIRGELHEMAYSKYQLVQAREEALQLSSIKSTFLS 229 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTPLN+I+GFS+++ + ++ +Y+ I R LL++IN++LD+S+I Sbjct: 230 NMSHEIRTPLNSIIGFSDILRDTRL----DKDQTDYVQTIQRCSDSLLHIINDVLDISKI 285 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVIL 373 E G ++ + ++ + + + + QEKN+++ ID S+ + D +RQ+++ Sbjct: 286 ENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDIDESIPAFALGDSHRLRQILM 345 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NL+ NAVKFT GRV +++ G G Y+ + D G GI + + SF Q ++I Sbjct: 346 NLVGNAVKFTDK-GRVCISLQRQPGSGHYVWKVSDTGRGIRLENMSKLFRSFSQEDVSIS 404 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I ++++ GG + SKL EG LP Sbjct: 405 RTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLPLEEA 449 >gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 796 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 88/311 (28%), Positives = 138/311 (44%), Gaps = 22/311 (7%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + ++ + + AELE + AE N AKS+FLA+MSHE Sbjct: 243 LAELARAFNGMTGRLRLARQDLTRANAELEQRHHELQLLMEAAESANQAKSQFLANMSHE 302 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEY-------IGDIHRSGQHLLNLINEILDLS 312 LRTP+NAI+G+SE++ E + E + I +G+HLL LIN+ILDLS Sbjct: 303 LRTPMNAIIGYSEMLMDEAQDMASASALPEVEAVFVPELKKITAAGRHLLALINDILDLS 362 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IEAG+ +L + ++V + +Q + + I P + + AD +RQV+ Sbjct: 363 KIEAGKMDLYLETFQIPEMVNDVACTIQPLVDKNANRLQIDISPGIGPMRADLTKVRQVL 422 Query: 373 LNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNA KFT G + + V + +KD+G G+ + + +F Q Sbjct: 423 FNLLSNASKFTDK-GVIELRVFNHHDEARDWIAFQVKDSGIGMTREQAARIFEAFTQADA 481 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---------- 479 + G GLGL I + GG+ + S+ +G LP + Sbjct: 482 STTRKYGGTGLGLTITRKFCELMGGRITVDSEPGQGTVFTVRLPLEVAADAHKSAGQEPD 541 Query: 480 -FIPEDNHEST 489 +PE H + Sbjct: 542 RAMPEAEHAAA 552 >gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 579 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + E E++ I + + L +L Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +L+ +A EK I + + V D Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLQLNLPKDPLYVSGD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL++NA+ +T GG V + V Q I + D+G GI + EIP + F Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ ++S+ G L Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKSEPGRGTVFTVTL 571 >gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 791 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 13/407 (3%) Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 Y A + L + E+ W+I L +++ + E Sbjct: 124 AGVAYLAQIDLRIQESAPTRSTAELAAWKILDEQADQLDEATQVLSDIIDDQSEALEATI 183 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATA 196 ++ +++AL+ +L+ +L V + + Sbjct: 184 TKQNGRMIVALTGRSLAILVLLSLFVYYLLGRVGNQFKLVRDGAQRFADGDFTTDIPIRR 243 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + +F + + + Q E+ E AK + + AEE N AKS FLA+M Sbjct: 244 YDEVGRLA-AMFNTMAQTIRGQIERL------EQAKDHAQRLQFVAEEANRAKSNFLANM 296 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAI+G+SE+++ E ++ + I SG+HLL LIN+ILDL++IE+ Sbjct: 297 SHELRTPLNAIIGYSEILQEECEDLGQTAMIED-LDRIRLSGRHLLTLINDILDLAKIES 355 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ E+ ISL ++ + + + + + L ++ +DE +RQ+++NLL Sbjct: 356 GKVEILPEEISLPQLLHDVRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLL 415 Query: 377 SNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 SNA KFT GR+ + V S+ DNG G++ ++ + F Q + Sbjct: 416 SNAAKFT-EHGRITLRVQPSEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKY 474 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL +++ + GG ++S+L G LP + V++ P Sbjct: 475 GGTGLGLALSRRLAQLLGGDIRVQSELGVGSTFSVHLPQS-VIDMAP 520 >gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328] gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328] Length = 728 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 170/331 (51%), Gaps = 19/331 (5%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + + ++ +T + +L E A+ ++ Sbjct: 256 LGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAEAQERLRQSN 315 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E + KS FLASMSHELRTPLN++LGF+++++ + G LN+ + + I +SG Sbjct: 316 EKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQ-VQFIEKSGW 374 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL+LIN+ILDLS+IE+G+ EL+ ++ + ++ EC+ M+Q RA +K + + + D ++ Sbjct: 375 HLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLESDYRIT 434 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----------------VGWTSGR--GQ 401 VW D + +RQ+++NLLSNA+KFT GGRV ++ + Sbjct: 435 QVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPINDSTPYL 494 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D+G GI + + F Q ++ +G GLGL + + + HGG ++S+ Sbjct: 495 CLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 554 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + +G LP T + + ++ + + + Sbjct: 555 VNQGSRFRVWLPLTEMRQELAKNYNPEPESR 585 >gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 597 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 107/422 (25%), Positives = 169/422 (40%), Gaps = 22/422 (5%) Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + P L+ L L G + S + + + + Sbjct: 23 LLAAVAALVPGSGLLLLTEDGTRLRAGIPLELSADQETALRADLSQVAATAPRSAPVLSS 82 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 T LT+ + A +L L ++ A F + L Sbjct: 83 PAAQRTQTGWVYALTVQRFAGVLFWLIPGTVN----LVAEPAGAFLLHNTLLYALGEQDR 138 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEVAKSLSDET 238 + G + + L + N + S EK+ L +E+ + + Sbjct: 139 QEMAAQEGQFRSQIEVLKRQHGRLIEDNYRQYSINREKEQEYARTLESEIARQTAELRKA 198 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R EE + KS FLA+MSHELRTP+NAI GF++++ ++ T +EY I +S Sbjct: 199 NARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADTSLDT----TQQEYCRTIRQSS 254 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL LIN+ILDL++IEAGR EL A L +++ M L +EK I I + D L Sbjct: 255 ATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGL 314 Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------GRGQYISIKDNGP 410 + D +RQV+ NL+ NAVKFT GG V + V + + ++D+G Sbjct: 315 PRAYLGDSHRLRQVLTNLVGNAVKFTESGG-VELLVESVAPPEAARQEQWLRFVVRDSGI 373 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + F Q + G GLGL I + ++ GG+ + S +G Sbjct: 374 GIPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGRIEVESLEGQGSCFSF 433 Query: 471 IL 472 + Sbjct: 434 TI 435 >gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1102 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 20/350 (5%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV--------LDISLAGMLATA 196 + I L I A F+ V+ + + + T + I +A Sbjct: 317 MGILLGIGAGLAFLTILFVYYAASKITRPIITLTELVKDAGKGNLKLQPAIKGPNEIAEL 376 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 S F + ++ +IL + E + +LE +++ AE N+AK FLA+M Sbjct: 377 TSSFYRMIEERDQAIQEILDAKQELEFSNQQLENLVEGANQLAVEAELANMAKGVFLANM 436 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N ++G E++ + N EY+ I+ S Q LL +IN+ILD S+I+A Sbjct: 437 SHEIRTPMNGVIGMGELLMETRL----NSEQTEYVERINSSAQALLRVINDILDYSKIDA 492 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 + +L +L + V ++ + A+EK +E I + + D +RQ+++NL Sbjct: 493 DKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPLWLKGDPGRLRQILMNL 552 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NAVKFT G V + V S ++D+G GI T+ T F Q + Sbjct: 553 SGNAVKFTEK-GEVVIRVSLDSEDEETAVIRFEVRDSGIGIPPDVQKTLFTPFTQADSST 611 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479 G GLGL I++ + GG+ + S+ +G LP +R Sbjct: 612 TRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLPKSRKAP 661 >gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] Length = 1052 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + ++ R +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 276 LRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP 335 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +YI IH S LL +IN+ILD S+IEAG+ + L D++ ++ Sbjct: 336 ----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQ 391 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +A EK +E+ +ID + V + D + Q+I+NL++NAVKFT G + V V T Sbjct: 392 KAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQ-GEITVHVTRTPHSD 450 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S++D G G++ + + ++F Q + G GLGL I + ++ GG Sbjct: 451 QKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSI 510 Query: 457 LIRSKLREGVEVIA 470 + S L +G E Sbjct: 511 QVESILGQGSEFTF 524 >gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra magnipapillata] Length = 566 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + AE N AKS FLA+MSHE+RTP+N ++G +E++ T+ + Sbjct: 35 VTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL----D 90 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S + LL +IN+ILD S+IEAG+ ++ +L V + + + LRA Sbjct: 91 AEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAH 150 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 +K +E+ + P + + D +RQV++N+L NA+KFT G V + + Sbjct: 151 DKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTER-GEVVLRIRQEVASNGKP 209 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++ D G GI ++ ++ +F Q + G GLGL I ++ GG + Sbjct: 210 LLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVE 269 Query: 460 SKLREGVEVIAI 471 S +G Sbjct: 270 STPGQGSVFHFT 281 >gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72] gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72] Length = 852 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 13/333 (3%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + + F V + I + F + + S Sbjct: 528 TAFGLTFSTLIMVFFVVAVAIWLASMLTRRITDLIGGLNRIEAGDFGFRFRSE----SKD 583 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ +++ + + ++ R++AE+ + KS F+ASMSHELRTPLN ILGF+E Sbjct: 584 ELGRLSDSLNNMADSVSESFQRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAE 643 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +I + N+ +++ I++SG+HLL+L+N++LD+++IEAG L A L ++ Sbjct: 644 LIRDDA----PNDEVRDHADTIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALL 699 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 ++ + AQ+K + + P L ++ D +RQVI NLL+NA+KFT G V + Sbjct: 700 QQVANLHGTMAQQKGLAFATEFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPA-GEVKL 758 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + T + ++D GPGIA P + F Q S I G GLGL + + ++A Sbjct: 759 -LARTEADRLIVGVRDTGPGIAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVAL 817 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GG + S EG +P V P + Sbjct: 818 MGGAVRLESAPGEGAYFEFWIPL--VSPAAPTE 848 >gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] Length = 587 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ + FLA++SHEL+TP+ +I GFSE + G ++N+ + E ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESE 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + LI ++LDLS+IE ++LS + + ++ + ++L +A EK I + + Sbjct: 410 RMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV- 468 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV D ++Q+ +NL++NA+ +T GG V V + YI + D G GI++ EIP Sbjct: 469 SVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPR 527 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + ++ H G + S++ EG +LP + Sbjct: 528 IFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPKS 583 >gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 717 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 123/392 (31%), Positives = 191/392 (48%), Gaps = 22/392 (5%) Query: 111 LVGQIAIGLCWTLLTLVEPGT------WTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 V W L + G + A ++A + A + + Sbjct: 322 AVPVHLAAGIWGTLAVALFGDVSLFPNGHSRFDQFLVQAQGVLAAGVFAFGVAFVVLTIV 381 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 F + V+ + I V + + +L + + F V + E ++ Sbjct: 382 NRFLSLRVSADAERIGLNVVEHGASSALLDVLGAMEAQASRGDFSKPVH-VEPFTEAGEM 440 Query: 225 IAEL--------------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 E + + R AE N +KS+FLA+MSHELRTPLNAI+GF Sbjct: 441 ATRYNLVLDKFNSEVRKREQTANDLRDARDVAELANASKSQFLANMSHELRTPLNAIIGF 500 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 SEV+ E GP+ NE YK+Y+GDIH+S HLL+LIN+ILDLS+IEA RYEL E + ++D Sbjct: 501 SEVMNGELFGPIENERYKDYVGDIHKSSSHLLSLINDILDLSKIEADRYELYEEELDVMD 560 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 +V C M++ RA E + + ++ L + AD++ +RQ++LNL+SNAVKFT GG + Sbjct: 561 VVASCERMMRHRADEAGVALKVTVEDELPLLMADKRALRQIVLNLVSNAVKFTPKGGLIQ 620 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ-GSIAIKSAEQGVGLGLPIAQSIM 449 + + D G G+++ +IP L F Q G + + +G GLGLP+ +++ Sbjct: 621 LGAFMEPDGRMAFRVADTGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLGLPLTRALA 680 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 HG +I S+ EG + +P +RVL Sbjct: 681 RLHGASLVIESEPGEGTTITIRMPYSRVLQTA 712 >gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 1749 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 198/469 (42%), Gaps = 13/469 (2%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-PIFPMWS 76 PT HL + F E ++ + A+ W+ Sbjct: 1288 PTHRHLTEAGGLEALFAEEDEDSFPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWN 1347 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ-IAIGLCWTLLTL----VEPGT 131 + + + V + + E+ + + I +L L V Sbjct: 1348 GGQGLMISIVPRAAEAVASGSVSSTELQAAQTQIAELDTILETATDGVLVLDRNGVIIKA 1407 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + +I + + +V + ++ Sbjct: 1408 NRSAEALFNANRADMIGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDG--REVLGLL 1465 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + F I I + + A+ + +++AE N KS Sbjct: 1466 KSGGLIPLFMTIGRINHDGED---RKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSD 1522 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA +SHE+RTPLNAI+GFSEV+ E G + NE YKEY+ DI SG H+++LIN++LDL Sbjct: 1523 FLAKISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDL 1582 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IEAG+ +L +A+S+ DIV EC+ ++Q +A + + I + S+ +V AD + +RQ+ Sbjct: 1583 SKIEAGKLDLQFTAVSIKDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQI 1642 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +LNLLSNA+KF GG+ V+ + + ++D G G++ ++ L F Q A Sbjct: 1643 VLNLLSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLHTAR 1702 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGLP+ ++++ + F I S +G V P RVL Sbjct: 1703 HGS--GTGLGLPLTKALVEANRASFRIDSTPDQGTLVEISFPTQRVLAE 1749 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 8/265 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L+ E A + + + ++ AE N AK+ FLA+MSHE+RTP+N ++G + ++ + Sbjct: 332 RLLDNRETAMATARQAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQL--- 388 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + I S + LL +IN+ILD S++EAG+ +L + L+ +V + +L R Sbjct: 389 -DPEQRHFATTIRDSAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPR 447 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398 A K IEI +DP L V D +RQ+++NL NA+KFT+ GG V Sbjct: 448 AHAKGIEIASMVDPDLPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGA 507 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI + I + + F Q + G GLGL I++ + GG + Sbjct: 508 GRLRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGV 567 Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483 S G LP V P+ Sbjct: 568 ESTPGAGSLFWFSLPFQMVETAPPQ 592 >gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 962 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 ++ + I + + + +E+ D RK A E + KS FLA+MSHE+RT Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+GF+E++ + ++++ I +S + LL +IN+ILD S+IEAG+ L Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILD 361 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 L DIV E ++ML A KN+++ + ++ D ++QVI NL++NA+K Sbjct: 362 RIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421 Query: 382 FTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 FT G V + +SI D+G G++ + ++ +F Q + Sbjct: 422 FTQT-GEVVLRASLEEEDKESNRITLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG+ + S+L +G L Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517 >gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 895 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 141/292 (48%), Gaps = 15/292 (5%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + F +L AE +ELE +E ++ E+ N AKS FLA+MSHE Sbjct: 328 LGVMVRSYFHLKDALLRKNAELSAYHSELEQK---VEERTRKLEKANQAKSEFLANMSHE 384 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N +LG +E++ +G N ++Y IH S LL +IN+ILD S+IEAG+ Sbjct: 385 IRTPMNGVLGMTELL----LGTELNTRQQQYTRTIHNSALSLLGIINDILDYSKIEAGKL 440 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 EL +L +V +C + L+ +K I++ +I P + D +RQ+++NL N Sbjct: 441 ELESVPFNLEILVDDCTAIFSLKCAQKPIQLTSRIAPGTPIDLVGDPTRLRQILINLTGN 500 Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 A KFT G + + + + SI+D+G G++E +I + SF Q + Sbjct: 501 AFKFTEK-GEICIGIEFLEDHSKQVRLKFSIRDSGIGLSEEQIGKLFQSFSQADTSTTRK 559 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I + + G+ + S+L G + P+ + Sbjct: 560 YGGTGLGLAICKQLAELMEGEIGVDSRLGHGATFWFT--AWLGVEASPKADP 609 >gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 574 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 141/261 (54%), Gaps = 9/261 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + LI + + ++ AE + AKS+FLA++SHELRTPLNA++G S++++ + + Sbjct: 311 NRLIERVSERTRQLQQAKELAEAASKAKSQFLANVSHELRTPLNAVIGLSQLLKDDAVDI 370 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + + I+ +G+HLL LIN+ILD+S+IEAG+ L +I ++ ++ ++ Sbjct: 371 GASPDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLYPETFDIITLINNVVLTVKP 430 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 ++ + + D L +++AD+ MRQV+LNLLSNA KFT G+V +TV Sbjct: 431 AIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKFT-TNGKVTLTVKIDKTIIL 489 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ DNG G++ + + F QG I+ G GLGL I++ G Sbjct: 490 KEAPFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKYGGTGLGLAISRHFCQMMG 549 Query: 454 GQFLIRSKLREGVEVIAILPN 474 G+ L+ S+L G LP Sbjct: 550 GEILVNSQLGVGSNFKVSLPL 570 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 8/274 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + A+ + +K AE N+AKS+F+A+MSHE+RTP+N ++G + ++ + Sbjct: 429 RDITDRKKAEEALRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDTDL--- 485 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E +E+ I S +LL +IN+ILD S+IEA + EL L + + +L ++ Sbjct: 486 -DERQREFAETIQSSAANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDLLAIK 544 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSG 398 AQ KN+E +DP + S+ D +RQ+I+N+ +NA+KFT G V VG Sbjct: 545 AQAKNLEFVCMVDPDVPSLLVGDPGRLRQLIINICNNAIKFTREGEVVVRVVGEEIKEDK 604 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +I D G GI E + + F Q + G GLGL I + ++ G+ + Sbjct: 605 AYLRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNGEIGV 664 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 S+ EG LP R S Q + Sbjct: 665 SSRPGEGATFWFSLPFQRQRQSREPLATASIQGR 698 >gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1082 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 148/256 (57%), Gaps = 10/256 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + +++A+ N AKS FLASMSHELRTPLNAILGF++V++ Sbjct: 576 RDITERKQAEEALKQAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQR---DHS 632 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +++ + I RSG+HLL LIN+IL++++IEAGR +++ L ++ ML L+ Sbjct: 633 LKGEHRQNLDIIGRSGEHLLELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLK 692 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400 A+EKN+++ + +P L + DE +RQV++NLL NA+KFT GG + + ++ + Sbjct: 693 AEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTNHSTDQN 752 Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I+D GPGIA E+ + +FGQ S +G GLGLPI++ + GG+ Sbjct: 753 PTIILTFEIEDTGPGIAAEEVNQLFEAFGQTETGRNSN-EGTGLGLPISRKFVELMGGEI 811 Query: 457 LIRSKLREGVEVIAIL 472 + S L G + Sbjct: 812 TVSSILGRGSLFTFTI 827 >gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 1200 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 13/322 (4%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + + L Q+ +++ + + + IL+ A E + Sbjct: 570 LFLPLGIQSFLAVPIFAGGICWGFIGFDDCSR--ERRWTDYDKTILAAMAAGIGEFIERK 627 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + TR +A E + KS F+A+MSHE+RTP+NAI+G +E++ + + ++ Sbjct: 628 RVQDELARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDL----DAQQRD 683 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S + LL +IN+ILD S++EAG+ + E+ L+D V ML + A+++ + Sbjct: 684 FAVIVRESAEGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKRGLA 743 Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YI 403 + IDP++ +V DE +RQV+LNL NAVKFT GG V + + G Sbjct: 744 LSTFIDPAIPAVLRGDEGRLRQVLLNLGGNAVKFTEQGG-VTILITPDDPPGVSLLRLRF 802 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G G++ + F Q + G GLGL I++ I+ GG+ + S+ Sbjct: 803 EVIDTGIGLSPVARQRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESEFG 862 Query: 464 EGVEVIAILPNTRVLNFIPEDN 485 G +P T V P + Sbjct: 863 RGSTFWFTVPFTAVAKPAPPPD 884 >gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 692 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 6/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + AE+ N AKS+FLA MSHE+RTPLN+ILG ++ G L + Sbjct: 304 ISARKKRIKDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDI----FHGSLLS 359 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ + S Q LL +I+++LD+SRIEAG + L+E I L+ + I L RA+ Sbjct: 360 EEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAK 419 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K I + ++ V+AD + QVI NL+ NA+KFT G V V + I Sbjct: 420 DKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNH-GHVAVKIEKLPNNSISI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + + F Q +I G GLGL I + ++ G + S+L Sbjct: 479 SVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLN 538 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + + + N+E + Sbjct: 539 VGSTFKITLPLKEIRDLPKQLNNEDKK 565 >gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106] gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106] Length = 641 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 8/285 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +K L + + A+ N AKS FLA+MSHELRTPL ++G S + Sbjct: 223 QLQQQKYTLERRVTERTQALHDALLAAQSANRAKSEFLATMSHELRTPLTCVIGISATLL 282 Query: 276 LET-----MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ E +EY+ IH SG+HLL LIN+IL+LS +EAG+ L S SL Sbjct: 283 RLYSNGAGIKQISREKQQEYLHKIHDSGEHLLELINDILELSEVEAGKTILQISEFSLTK 342 Query: 331 IVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + ++ + + RAQE N+ + I P AD++ + +V+ NLLSNA+KFT G+ Sbjct: 343 LAQKTLYSFRERAQEHNVLLISDIQVKPDEDLFIADQRRVEKVLFNLLSNAIKFTPESGQ 402 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + VG + I+D G GI+E + P + F Q + + G GLGL + + + Sbjct: 403 VTLRVG-VNKNTAIFQIQDTGIGISEEQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQL 461 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 + HGG + S G +P + + + + +K Sbjct: 462 VELHGGVIKLTSTENVGSTFTVHIPIQPTPSPNSQQQVKDSAFKT 506 >gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 579 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + E E++ I + + L +L Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +L+ +A EK I + + V D Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL++NA+ +T GG V + V Q I + D+G GI + EIP + F Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ + S+L G L Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTL 571 >gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 1029 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 8/264 (3%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ + A+ +L+ K+ ++RAEE + KS FLA+MSHE+RTPL ILG Sbjct: 765 QHIGYIGLMADVTELVEAERQLKA----AKERAEEASRLKSAFLANMSHEIRTPLTGILG 820 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F+E++ E + E +E+ I RS + LL L+N+ILDLS+IEA R EL ++ Sbjct: 821 FAELL-DEELETRQQEDLREFTHIIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVV 879 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 D+ R+ + ++Q A+EK +++ + +L + AD + QV++NLLSNA+KFT G V Sbjct: 880 DVARQAVQLMQPLAEEKGLKLELHAEENL-TARADPNRLHQVLVNLLSNAIKFTDE-GHV 937 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V +G ++++D G GI+ +P + F Q + QGVGLGL I + ++ Sbjct: 938 RVELGQ-KKGWVLLAVEDTGCGISPEFLPHLFEPFRQEHEGLTQKHQGVGLGLAIVKRLI 996 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 GQ ++S++ G +LP Sbjct: 997 DLMSGQITVQSEVGRGTRFEILLP 1020 >gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1038 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 28/305 (9%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS----LSDETRKRAEEENLAKSRFLASMSHELRT 262 L ++ + I + L+ + + AE N AKS+FLA+MSHE+RT Sbjct: 244 LQRAALNIGQLKDSMISLLKTRQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRT 303 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NA++G + ++ + ++++ I SG LL LIN+ILD S+IEAG+ +L Sbjct: 304 PMNAVIGMTGLLLNTPL----EAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLE 359 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + + + E ++++ +A EKN+E+ + P+ +++ D +RQV++NLL+NA+K Sbjct: 360 QQPFEIRTCIEEALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALK 419 Query: 382 FTAIGGRVH-VTVGWTSGR-----------------GQYISIKDNGPGIAEGEIPTVLTS 423 FT G V V+ + +KD G GI ++ + S Sbjct: 420 FTGEGEVVVYVSSKPIESKDLDAESDLEVIAEATPYEIQFDVKDTGIGIPPDKLERLFKS 479 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIP 482 F Q + G GLGL I++ + GG+ + S++ G + + + N P Sbjct: 480 FSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVSVGSTFSFTITASEIPNYVSP 539 Query: 483 EDNHE 487 + + Sbjct: 540 KAASD 544 >gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 900 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 95/452 (21%), Positives = 174/452 (38%), Gaps = 28/452 (6%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL------AVYAANLSLGKKV 93 L+ + + I +F + + L A +L Sbjct: 187 LYANRRRERGFF--FYAVANLGIALYFVRMASPLAFLPPVLSYSVSKAGLIVSLGYLLVF 244 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + ++L+ +G L+ ++ L++ + + Sbjct: 245 YFEFFSLRASDRLKRYVLILVWVVGGHMALVPRTLQDAERVFAASLVVGFAFLVSYVVIS 304 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQA-------IMSMHVLDISLAGMLATALSF-FTYITY 205 + F L +M + + F + Sbjct: 305 IVIFRHGAREGGFLLIGTGLLVLLGGHDIVYKVMGREPFVWLQGIGIFVFEAMIFITLAS 364 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + ++ + E+ E + E+ N AKS FLA++SHE+RTPL+ Sbjct: 365 RTMRVYARLEEYST---GIEEEVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLH 421 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GF+E ++ G + + ++ + Q L LI+EILD+ ++E G+ L ES Sbjct: 422 AIMGFAEALK----GEQDPREREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESP 477 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V +++ A+ K + +I+ + V D ++QV++NL+ NAVKFT Sbjct: 478 FNLHEVVGYVCRVMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTE 537 Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GG V V VG + ++D G GI E V SF QG + G GLG Sbjct: 538 EGG-VRVRVGCVEEGEGRWIEVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLG 596 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + IA+ ++ GG + S++ +G V +P Sbjct: 597 MTIARELVRLMGGDIGLESEVGKGTRVWFRIP 628 >gi|283782020|ref|YP_003372775.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440473|gb|ADB18915.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 926 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 182/468 (38%), Gaps = 57/468 (12%) Query: 49 SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108 I L + W + L + A+ L + D+ Sbjct: 271 GIIAGLVAICATCNVAWDFGAVFIGI--SAGLIMELASDILERYFKLDDVVNA------- 321 Query: 109 WLLVGQIAIGLCWTLL--TLVEPGTWTPEYLTIYKSATL-LIALSISALSNFMLPYAVFL 165 + + W L + P + P+ + + ++ +S+ +F + + Sbjct: 322 ---ISVHGVAGAWGTLLVAFITPPEFMPQGWSRLDLLLVQMLGISVCFCWSFGITWVALS 378 Query: 166 SF---FPVVVAL--------STQAIMSMHVLDISLAG-----------MLATALSFFTYI 203 P+ V + + + D+ + + I Sbjct: 379 ILKRYMPLRVTIEEEEAGLNVAEHDARTDLHDLLVTMEQNMRGDHTRRAAVDECTEAGMI 438 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKS--------------LSDETRKRAEEENLAK 249 + +AE LE S + R AE N K Sbjct: 439 AKQYNRVLEAREQSEAELRRYATMLEDTNSYVENQAVEMQFQAKALEAARSEAERANHTK 498 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+F+A+MSHE+RTP+ AILG+ +++ + +E +K+ + I +GQHLL +IN+IL Sbjct: 499 SQFVANMSHEIRTPMTAILGYVDMLLDDADAHPVSEKWKQPLATIKSNGQHLLEIINDIL 558 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D+S+IEAG+ + S+ +V + +L+ RA+ K + + K + + + +D + Sbjct: 559 DISKIEAGKLTIEIIECSVPQLVGDVTNLLRHRAEGKGLALAVKFNSPIPETIHSDPTRI 618 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSF 424 RQV+LNL+ N++KFT G V V + +S+ D+G G+ + +I + F Sbjct: 619 RQVLLNLVGNSIKFTNH-GEVRVELEMFYDDPENPQLQLSVVDSGIGMDDEQIARLFQPF 677 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + G GLGL I + + GG ++S++ G I + Sbjct: 678 VQADSSTTRRFGGTGLGLTITKRLAEMLGGSITVKSQIGHGSSFIVRI 725 >gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 903 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 26/367 (7%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 T + +LI ++ S L F L +V P+ + + LD ++G L Sbjct: 173 RDTFFAVIMVLIGIAFSTLFGFRLVKSV---IQPITDMVQAVHKIREGRLDTRVSGQLTG 229 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEENL 247 L + K+ + + + + ++E+ D +KRA+E Sbjct: 230 ELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAAR 289 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ + + P + +Y+ I +S ++LL +IN+ Sbjct: 290 VKSEFLANMSHELRTPLNGVIGFTRQLLKTALTP----SQTDYMQTIEKSARNLLGIIND 345 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILD S++EAG+ +L SL D + E + +L A +K +E+ ++D + + D Sbjct: 346 ILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPM 405 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI--KDNGPGIAEGEIPTVL 421 ++QV+ NL NA+KFT G V V + T +G +++ +D G GI+E + + Sbjct: 406 RLQQVLTNLAGNAIKFTER-GNVDVHIEQTGGSNGNKVRLNVLIRDTGIGISEEQQRQLF 464 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q +I G GLGL I Q ++ GGQ S+L +G L ++ Sbjct: 465 QAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSL----DMDVS 520 Query: 482 PEDNHES 488 P E Sbjct: 521 PLPQTEK 527 >gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 441 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 R++A+ + AKS FLA+MSHELRTPLNAI+G+SE++ E + TY + Sbjct: 195 KTEELKILREQAQNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDDGLD-TYSDD 253 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I+ SG+HLL LIN+ILDLS+IEAG+ EL L + + + ++ + Sbjct: 254 LSKINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPLVEKNGNKF 313 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + ++ + D+ +RQ++ N+LSNA KFT G V + + + ++ D G Sbjct: 314 VIEKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKK-GTVTLAITKSGDD-IKFAVVDTGI 371 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ EG++ V F Q + G GLGLPI++ + GG+ + S+ +G Sbjct: 372 GMNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEGKGTTFSI 431 Query: 471 ILPNT 475 +P Sbjct: 432 TIPIE 436 >gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] Length = 692 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 6/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + AE+ N AKS+FLA MSHE+RTPLN+ILG +V + + Sbjct: 304 ISARKKRIRDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHSSLL----S 359 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ + S Q LL +I+++LD+SRIEAG + L+E I L+ + I L RA+ Sbjct: 360 EEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAK 419 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K I + ++ V+AD + QVI NL+ NA+KFT G V V + I Sbjct: 420 DKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNH-GHVAVKIEKLPNNSISI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + + F Q +I G GLGL I + ++ G + S+L Sbjct: 479 SVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLN 538 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + + + N+E+ + Sbjct: 539 IGSTFKITLPLKEISDLPKQLNNEAKE 565 >gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.] Length = 701 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 150/269 (55%), Gaps = 6/269 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + N + E + +A+ + ++RAE + K FLA+MSHELRTPL Sbjct: 432 EQISRLNNDLRRHAKELEQRVAD---RTAELVIAKERAESADRIKPAFLATMSHELRTPL 488 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+I+GF+ ++ E GPL NE ++ + + S +HLL+LIN++LD+S+IEAG+ ELS + Sbjct: 489 NSIIGFTGIMLQELAGPL-NEEQRKQLTMVQSSSRHLLSLINDVLDISKIEAGQLELSVT 547 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L + + + ++ A++K +++ I +++ D++ + QV+LNLL+NAVKFT Sbjct: 548 SFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINTAATDQRRLEQVVLNLLNNAVKFTE 607 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G VH++ + + +S+ D G GI E+ + F Q + +G GLGL I Sbjct: 608 K-GYVHISCRIENDKYL-LSVSDTGTGIRPEELSGLFQPFHQIDTGLTRKYEGTGLGLSI 665 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ GG ++S+ +G I P Sbjct: 666 CKRLLDMMGGTIDVQSQWGKGSTFIVRFP 694 >gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 917 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + + AE N AKSRFLASMSHELRTPLNAI+G+SE++ E + Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I +G+HLL+LIN+ILDLS+IEA + E+ S+ D++R+ + Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 E Q + L + +D+ +RQ + NLLSNA KFT GGRV + V Sbjct: 516 RNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRADRDWL 574 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G++ + + +F Q + G GLGL I +S GG + S+ Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634 Query: 462 LREGVEVIAILPN--TRVLNFIPED 484 + +G +P R + P + Sbjct: 635 VGKGSVFTMEVPAQCEREADGSPAE 659 >gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 599 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 114/474 (24%), Positives = 181/474 (38%), Gaps = 46/474 (9%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 L G W P P+W L+ YA + ++N I+ +Y + LV Sbjct: 129 LTYTAGGLWVLTGPHGPLWYASVLSAYAMVFAGTVLMINQAIRSQSLYRAQAISLVVGAL 188 Query: 117 IGLCWTLLTLVE----PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF---FP 169 L W L P + + L +++ L A P Sbjct: 189 --LPWAASMLFVTGLSPIPFVDPTPVAFALGGLAFTVAMQRYRALDLLPAARERIVDQMP 246 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--------- 220 + + + + + A + AT + ++ + + E Sbjct: 247 DAIIVLDMHDRIIDLNPAAQAILSATTDVLGKSLARVAPPWLIEQVRDRYEGQFEVQQTG 306 Query: 221 --------------------------KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 I + A E ++ AE + AKS FL+ Sbjct: 307 ETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQEAKEAAEAASQAKSAFLS 366 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSHELRTPL AILG+SE + + + + + + I +G+HLL LIN+ILD +R+ Sbjct: 367 MMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD-LDRIITAGRHLLTLINDILDYARL 425 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EA + + + ++ E ++ LQ A++ I ++P L V AD +RQV+LN Sbjct: 426 EANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLN 485 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA KFT G + V ++ I + D G GIA ++ + F Q Sbjct: 486 LVGNACKFTGQ-GEIRVHCYRSTTAEIQIDVSDTGIGIAADQLQHLFKPFVQVDNGPTRR 544 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL I Q + GG L+ S+ G LP T V + E + E Sbjct: 545 YGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLPITGVPSAPCEVSQED 598 >gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 606 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++ + + F+A++SHELRTPL +I +SE + + + ET ++ I+ + Sbjct: 365 QKLDNMRREFVANVSHELRTPLTSIKSYSETLMDGAL--EDKETAYRFLNVINSEADRMT 422 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+E + + + +VR + ++L A+EK I V+ Sbjct: 423 RLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVIECFSIGDKPEVY 482 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD+ + QV+LN+L+NA+K+T G++ V +G Y+ + D+G GI E +I V Sbjct: 483 ADKDRIEQVVLNVLTNAIKYTPDKGKITVYIGKMYSD-AYVKVVDSGIGIPEEDIKRVFE 541 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ I+ H G I S+L +G EVI LP Sbjct: 542 RFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVRLP 592 >gi|307822954|ref|ZP_07653184.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735729|gb|EFO06576.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1247 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 132/312 (42%), Gaps = 23/312 (7%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + L FT +S + +L E L A + + R A + K+ F Sbjct: 477 ILGVLFVFTDAYPVQNESRIAMLKEVGEMMALALLQNQANASLEAARDAALQVAHTKTEF 536 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+N +LG ++++ + + + I S + LL +IN+ILD S Sbjct: 537 LANMSHEIRTPMNGVLGMLDLLQDTQL----SREQWDLIDIAANSAESLLTIINDILDFS 592 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371 ++EAG+ EL + +L D+V E +L RA K +E+ + L W D +RQV Sbjct: 593 KLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQV 652 Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-----------------YISIKDNGPGIA 413 + NL+ NAVKFT G V V V + D G GI Sbjct: 653 LTNLIGNAVKFTEQGEVSVTVRVSKKDDTDAASAPGRFAADTPSLTILRFEVVDTGIGIT 712 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +F Q + G GLGL I++ ++ G + S L +G LP Sbjct: 713 AEAQARLFQAFSQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGVESALGQGANFWFTLP 772 Query: 474 NTRVLNFIPEDN 485 V N P Sbjct: 773 LAAVDNEAPAPQ 784 >gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis] gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis] gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 579 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + E E++ I + + L +L Sbjct: 347 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--EDKEALSEFLSIILKESERLQSL 404 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +L+ +A EK I + + V D Sbjct: 405 VQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYVSGD 464 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL++NA+ +T GG V + V Q I + D+G GI + EIP + F Sbjct: 465 PYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQ-IEVADSGIGIQKEEIPRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ + S+L G L Sbjct: 524 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTL 571 >gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 587 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E +S F+A++SHELRTPL +I GF E + M + E + ++ I+ L Sbjct: 359 ELEKMRSEFVANVSHELRTPLTSIKGFVETLLDGAM--EDREVARRFLEIINVETNRLSR 416 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+IL LS IEA E+S S ++ +IV + + +L A+EKNI + I P L + A Sbjct: 417 LINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMA 476 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 +E ++QV++NL+ NA+K+T GRV ++ SG G +S+KD G GI + + Sbjct: 477 NEDLIKQVLINLVDNAIKYTPENGRVVLSATP-SGGGLKVSVKDTGIGIPPESMSRLFER 535 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + + HGG + S++ G + LP Sbjct: 536 FYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFTFYLPA 586 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S+IEAG+ ++ SL D++ ++ L+AQ Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT G + ++ Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 MLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1120 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 11/262 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R+ A E + KS+FLA+MSHE+RTP+N +LG ++++ ++ +EY Sbjct: 399 ELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRLSLEAKP----REYAQT 454 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+RS +HLL++IN+ILD S+IEAG L L + + M+ A+EK +E+ Sbjct: 455 IYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNVL 514 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNG 409 I+ S+ + D ++Q++LNL++NA+KFT G+V V V S R S++D+G Sbjct: 515 IESSVPRQLQGDPGRLKQILLNLVNNAIKFTDR-GQVLVRVSLKSSTVDRKLIFSVRDSG 573 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI+ + SF Q + G GLGL I + ++ GG+ +R+ + +G Sbjct: 574 IGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNFW 633 Query: 470 AILPNTRVLNFIPEDNHESTQY 491 +P + P + +Q Sbjct: 634 FTIPLQ--MQPQPVERSRGSQI 653 >gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 937 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I RS +LL++IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLST----SQTDYLQTIERSANNLLSIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + S + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100] gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100] Length = 713 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 94/419 (22%), Positives = 171/419 (40%), Gaps = 24/419 (5%) Query: 62 IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-----IGEVYVWRIWLLVGQIA 116 + W T + A + + + ++ W + + Sbjct: 146 LFGWSTLITTVGDLTGAIFLTIPALILISPWLRKRNLSLFAVKPLPPTHWEVVTRKEKAL 205 Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176 + + ++ P+ +Y LL A + ++ V F +++ Sbjct: 206 FAVVLGGMLVLALSFHIPQTWYVYGILMLLSAAWYGMYAALVVNTWV--VFLNIILPKIA 263 Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 S L++ L T + KI + L + Sbjct: 264 NLPWSNSFLEVQTPATLLTLCFCSLITGSAVTSLTGKIRELNETQGQLKS---------- 313 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + +AEE + AKS FLA MSHE+RTPLN++LG E++ + ++ + Y+ Sbjct: 314 -AKDQAEEASRAKSEFLARMSHEIRTPLNSVLGMLELLRETQL----SKDQERYLTLFSH 368 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 +G++L LIN++LD S+IEA + + ++ VR +LQ++A+E+ + I Sbjct: 369 AGENLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAEEQGLHFELHISK 428 Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAE 414 + + W D +RQV+ NL+ NA+KFT G +V + + + I ++D G GI Sbjct: 429 DVPPLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLLIEVQDTGIGIPR 488 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +SF QG I G GLGL I+++++ GG ++S G +LP Sbjct: 489 ERQSKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLAGRGTTFKILLP 547 >gi|167766413|ref|ZP_02438466.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1] gi|167711822|gb|EDS22401.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1] Length = 804 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 25/389 (6%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI------------SALSNFM 158 ++ + +G+ L+ + Y Y T++I L + + +F Sbjct: 53 VILGLNLGIAVLSFVLLFYAYKSGRYQFCYVVTTIMIFLMMFPYLFFKSGGYKGGMVSFY 112 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNV 212 + +F F + A M M V ++ + + L Sbjct: 113 IFGILFTVFMLEGKVMFFTAFMEMVVYIATIMIAYQNPQMVVWFSSEKEVVMDLLIGFCA 172 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +S A + + +E R A+ N AKS FLA+M HE+RTP+N +LG +E Sbjct: 173 SSISVAAVMYLHFRMYNKQQEILEEARIEAQSANKAKSAFLANMGHEIRTPINVMLGMNE 232 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +I E+ +E ++Y I RSG +L++LIN ILD+SRIE+G+ E+ E L ++ Sbjct: 233 MILRES----ESEEIRQYAKSIERSGGYLISLINNILDISRIESGKMEIEEGKYELRQLL 288 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E +++ + +A++K++++ D +L + D ++Q++LNL++NAVK+T G++ + Sbjct: 289 DEVMLIAEKQAEQKSLKMNLIFDKTLPAYLIGDVIHIKQILLNLINNAVKYTKE-GQIDI 347 Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V +KD G GI E +P + +F + +G GLGL IA+ ++ Sbjct: 348 KVSKNEEETKLIFEVKDTGIGIKEENLPVLFDAFMRVDSKKNKKIKGTGLGLAIAKQLVE 407 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG + S +G LP +V + Sbjct: 408 QMGGMIWVESVYGKGSSFFVQLPMKKVSD 436 >gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 903 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 12/334 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L ++ L+ + P+ + + + +D + Sbjct: 289 LFSIIGILLACITAYFLASRIMLPINTITEVFKKLAKGEDVDAIPGITQQNEIGQLANAA 348 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + N + E L +E E + E + +AE+ ++KS FLA+MSHE+RTP+ Sbjct: 349 DVFHEKNKQTTVLLLEAQRLNSEQETLNAELVEAKHKAEQATVSKSMFLANMSHEIRTPM 408 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+G +V+ + T ++++ + S Q L++LIN+ILD S++EAG+ ++ + Sbjct: 409 NGIIGLLDVVMKSELTS----TQRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQV 464 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383 SL + + + RAQEKN+ + DP++ + D + QV+LNL SNAVKFT Sbjct: 465 EFSLNSVFANLLTNISARAQEKNLNVRFICDPNIPPILIGDPLRISQVLLNLSSNAVKFT 524 Query: 384 AIGGRVHVTVGWT---SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G V ++V + + + ++D G G+++ ++ V SF Q + G Sbjct: 525 -RNGSVTISVTYDIIPNSNKLLLRARVQDTGIGMSKEQLDKVFESFTQADGSTSRDFGGT 583 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I + ++ GG+ SK+ G Sbjct: 584 GLGLTIVKQLVKLMGGKVTAESKVNVGSTFEVSF 617 >gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] Length = 868 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 137/272 (50%), Gaps = 14/272 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ ++ ++ ++ AE+ N+AK FLA+MSHE+RTP+NAI+G + + + + Sbjct: 184 ISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQL----S 239 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K YI I S Q LL +IN+ILD S+I+AG+ + L D++ M +A Sbjct: 240 EKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYKAY 299 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 +K++E + ++ ++ D + QV++NL+SNA+KFT G ++V V Sbjct: 300 DKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNAIKFT-EDGEINVAVTLLDKNTDKV 358 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G G+ E + + +F Q + G GLGL I++ ++ GG + Sbjct: 359 WLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAISRRLIQLMGGDIGVT 418 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S + +G L L PE + QY Sbjct: 419 SGVGQGSTFYIEL----TLPMQPEQDDSHHQY 446 >gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4] gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4] Length = 2062 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 13/263 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +++I L+ + ++ AE + AKS F+A+MSHE+RTP+N I+G +++ + Sbjct: 1320 NEMIHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTA 1379 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +EY+ + S LL +IN+ILD S+IEAGR EL ++ SL + + + L Sbjct: 1380 ----EQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSW 1435 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 RA +K IE+ I + S+ D +RQ++ NL+ NA+KFT+ G V + V Sbjct: 1436 RAHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQ-GEVDLVVKVEKSLS 1494 Query: 399 -RGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S+ D G GI + ++ + +F Q +I G GLGL I+ ++ G+ Sbjct: 1495 CGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGK 1554 Query: 456 FLIRSKLREGVEVIAI--LPNTR 476 + SK +G P + Sbjct: 1555 LSVVSKSGKGSTFEFTAQFPTSP 1577 >gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 841 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 102/488 (20%), Positives = 181/488 (37%), Gaps = 70/488 (14%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 +Y S ++K+K + ++ + + V+ V Sbjct: 12 LYNSNRDKQKTTWRRRHASR---------SPEYGQSFTRV--------------IVVFVI 48 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 + + TQN + T+A +S+ + + G +A+G Sbjct: 49 CLYFYITQNH-----LIFTIAAAYLAVSIAFLIWITLSPAANNRR------RGLMAVGDV 97 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 T + G L + +++ + V V M Sbjct: 98 VTTSVCMYHGDGEDGALFVGLYLWIIVGHGFRFGVKYAYLAMALSVAGFVTVVYLNPFWM 157 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + I ++ F + L Sbjct: 158 QHIYMAIGNLLLILVVPLFMARLIQKLH----------------------------HAID 189 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE N AKS+F+A+MSHELRTPLN I+G S+++ ++ K + I S H Sbjct: 190 AAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYSTSLSN----EQKRFTFVIKESAYH 245 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 L+LI ILD++++EAG+ EL L ++ + + + +A+EK I I + DP + Sbjct: 246 QLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIALRYDPEIPF 305 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGE 416 ++ D K ++Q++LN++ NAVKFT G + V + + ++ D G G++E Sbjct: 306 ALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVTDTGIGMSEDV 365 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q +I G GLG IA+++ GG ++S+ G LP +R Sbjct: 366 QGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGTTFTINLPLSR 425 Query: 477 VLNFIPED 484 E Sbjct: 426 QQPGTSEP 433 >gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] Length = 1078 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 10/265 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ A I + A ++ R++AEE + AKS FLASMSHE+RTPLNAI G S+ Sbjct: 534 DRITHVAVVTRDITSYKDALRRLEDARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSD 593 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ L + P +E + I S LL LIN+ILDLSRIEAGR EL + D+V Sbjct: 594 LLLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLV 649 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 R M + +A+ K + ++ L V D +RQ+++NLLSNA+KFT GG V + Sbjct: 650 RHTWEMFRPQAETKGLSFELRLSEGLPPVVNGDPVRIRQILINLLSNALKFTEEGG-VTL 708 Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V + + ++D G GI ++ + F Q +I G GLGL I++ Sbjct: 709 SVTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQ 768 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + GG ++ S++ G + + Sbjct: 769 LAEMMGGTIVVSSEVGRGSTFVCRI 793 >gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 778 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 105/423 (24%), Positives = 176/423 (41%), Gaps = 23/423 (5%) Query: 88 SLGKKVMNSDIKIGEV----YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143 L + + +I + G L LVE T + + Sbjct: 108 YLRDRSDTTPSIPQYTGGKVSPAKITFVREVRIEGELLGTL-LVEASTRAIQEQFLLSLL 166 Query: 144 TLLIALSISALSNFMLPYAV-FLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFF 200 +I LS+ + + Y + L P+ +S + A S Sbjct: 167 NAIIMLSVGTIIAGFIGYGIQRLITRPLQELEGLATKVSRDRIYTRRATKRYEDEIGSLV 226 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + Q+ DL E+ ++A+ N AKS FL++MSHEL Sbjct: 227 ESFNFMLESVQTRDEEIQSNNRDLEMEVAARTIELRTAMEKAQSANKAKSEFLSTMSHEL 286 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+G S ++ + + ++ + YI I S LL+LIN++LD S+IE+G + Sbjct: 287 RTPMNAIVGMSSLLMDKDL----DDERQSYIKIIRSSSDALLSLINDVLDYSKIESGHLD 342 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379 L + +L++ + E + ++ ++ I+ IDP L ++ D +RQV++NLL NA Sbjct: 343 LEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKLPAIVKGDVTRLRQVLINLLGNA 402 Query: 380 VKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 VKFT G V + VG + I+I D G GI + + +F Q ++ Sbjct: 403 VKFTQK-GHVWLEAKCCVVGESENVFASIAIHDTGIGIPDDRKHRLFQTFSQVDSSMTRR 461 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN----TRVLNFIPEDNHESTQ 490 G GLGL I+Q + GG + S++ G +P L P N ++ Sbjct: 462 FGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIPLNCEENETLATYPSPNPDAVP 521 Query: 491 YKC 493 + Sbjct: 522 FTA 524 >gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti 1021] gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 917 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + + + AE N AKSRFLASMSHELRTPLNAI+G+SE++ E + Sbjct: 397 ITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDE 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I +G+HLL+LIN+ILDLS+IEA + E+ S+ D++R+ + Sbjct: 457 ELVPD-LDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMA 515 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 E Q + L + +D+ +RQ + NLLSNA KFT GGRV + V Sbjct: 516 RNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRVRREQRPDRDWL 574 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G++ + + +F Q + G GLGL I +S GG + S+ Sbjct: 575 VFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESE 634 Query: 462 LREGVEVIAILPN--TRVLNFIPED 484 + +G +P R + P + Sbjct: 635 VGKGSVFTMEVPAQCEREADGSPAE 659 >gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] Length = 949 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A++ + ++ AE N+AKS+FLA+MS E+RTP+N I GF E++EL + Sbjct: 303 ITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLELTNLSS--- 359 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE+I + + + LL++IN+ILDLS+IEA + + + +L D + + + +L +A Sbjct: 360 -EQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLLAPKAA 418 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +E++ +I + V D +RQ++ NL+ NAVKFT G V +++ + + Sbjct: 419 EKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEK-GYVSISMDYLEKDHEIA 477 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA +IP V +F Q + G GLGLPI+ ++ GG + Sbjct: 478 LVNFEVEDTGIGIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGDIRVE 537 Query: 460 SKLREGVEVIA 470 SKL EG Sbjct: 538 SKLGEGSTFKF 548 >gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 639 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 85/331 (25%), Positives = 153/331 (46%), Gaps = 12/331 (3%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 AL ++ + + +AL I++ ++ + + Sbjct: 309 ALQAYVRNQTFAVGLIGLFIALIASYIINRGIIKPLEQLKQGAERVSNGRYDQKVVVDSD 368 Query: 213 KILSCQAEK-----DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPL 264 A+ + E K ++E + +E + KS +A +SHELRTPL Sbjct: 369 DEFGELAKAFNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPL 428 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 +I G+ E++ TMG + N++ K+ + + L LI +LDLS+IE G E+ Sbjct: 429 TSIKGYVELVLDGTMGAI-NDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYRE 487 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 ++L IV + I LQ A EKNI++ ++I+ ++ AD+ + QV+ NL+ NA+KF+ Sbjct: 488 KVNLKGIVCDVIEYLQPIATEKNIKLKKEIEE--IAIDADKDRITQVLTNLIENAIKFSP 545 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + ++ ++ + D+G GI + ++ V F Q + K + G GLGL + Sbjct: 546 ANESIMISADL-EDEHVHLRVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAV 604 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +SI+ H G + S+L +G ILP + Sbjct: 605 CKSIVEAHKGSIWVESELGKGSTFHIILPLS 635 >gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3] gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3] Length = 508 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 8/336 (2%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-- 212 V + + + + + D T + Y + + Sbjct: 176 IALTDRITVLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQKLGAGELDYRIEDIDDDG 235 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +L A + + A+E N AKSRFLA++SHELRTPLNAI+G+SE Sbjct: 236 ELGDLASAFNSMSDKLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSE 295 Query: 273 VIELETMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++ E P++ + Y+ + I SG+ LL LI++ILDLS+IE G+ L + + Sbjct: 296 MLHDELDDETPIDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGE 355 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + L + + +L + D RQ+I+NLLSNA KFTA G + Sbjct: 356 ALTMAVDALAPLLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAE-GMIR 414 Query: 391 VTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V+ +T + + I++ D G G+ + V +F Q A + G GLGL I + Sbjct: 415 VSASFTQATQHLEITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFC 474 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GGQ + S+ EG LP PE Sbjct: 475 ELMGGQISVASEPGEGSTFTVSLPVDP--ELTPEAA 508 >gi|329889991|ref|ZP_08268334.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] gi|328845292|gb|EGF94856.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] Length = 595 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 98/431 (22%), Positives = 175/431 (40%), Gaps = 20/431 (4%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 ++ + + L ++ A +W + TLA A + K+V Sbjct: 16 AILQTHYLRYLIIVSWALGLIATVGLAHGLVWFVATLAAGALRGEVEKRVSQRAGS---- 71 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 W + A W + L+ + + + + + + + A A+ Sbjct: 72 -GWGLVFPAVATATTAVWAVAPLLAWFSSSMFGRELAIAFLMSGYVLVFAQLRNSPRQAI 130 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 +S A + + + + + +I + Q + Sbjct: 131 LISSPYGAAAAIIAVNLLGDPVFWPFVALAPFTAASLFVLVTMTMLREERIRAFQEHQAH 190 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + R +A+ N AKS FL +SHELRTP+N +LG ++++ + Sbjct: 191 LIEE-------LEAARDKADAANEAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---- 239 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY+ I SG +LL+L+N+ILD+++IEAGR ++L D+ R + + +A Sbjct: 240 EGAQREYLAIIRNSGDNLLSLLNDILDMTKIEAGRMNFEAVDVNLEDLHRRIVGPFEAQA 299 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + K + + + + V D + QV+ NLLSNAVKFT G VT G + Sbjct: 300 EAKGLNFIAEFEGDVPAVVRGDPLRVCQVVQNLLSNAVKFTDQGAVRFVTRGRRVSERRV 359 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G GI++ ++ + F Q + G GLGL I++ + GG+ + Sbjct: 360 AFEFVVIDSGSGISDDDMDQLFQPFTQVDASSTRRFGGTGLGLTISRRLANIMGGEISVT 419 Query: 460 SKLREGVEVIA 470 S L EG Sbjct: 420 SSLGEGSTFTF 430 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 2/233 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ F+A++SHELRTP+ +I G ++ G L E +E + + L+ Sbjct: 264 ELDRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEA-RELLTIARNNTDRLIR 322 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ILD+SRIEAG+ E+ + +S D+VR + + A+++NI + + L+ V A Sbjct: 323 LINDILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEGLARVMA 382 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+SNA+KF+ G V + T + D GPGI + + Sbjct: 383 DADRLHQVLDNLISNAIKFSPQGSEVLIRARETGDG-VRFDVIDRGPGIPADQTGLIFER 441 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ HGGQ + S L EG +P Sbjct: 442 FYRVDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIPVEP 494 >gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] Length = 776 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 8/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + +V + + R+ A +KSRFLA+MSHE+RTPL+ ILG +E++E + + Sbjct: 106 ITDQKVTEEHLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----D 161 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ I SG+ LL LIN+ILD S+IEAG+ + L ++V + + M+ L+A Sbjct: 162 EEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAH 221 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 +K++E+ I + V D +RQ+++NL +NAVKFT G RV + Sbjct: 222 KKHLEVVVDIGEEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAW 281 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G GI E + + F Q + G GLGL I++S++ G+ +RS Sbjct: 282 VAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRS 341 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 K EG +LP V ++ P Sbjct: 342 KEGEGSSFWFLLPLPIVESYEP 363 >gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1390 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 13/298 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + VK+L+ A + + + + ++ A+ N AKS FLA+MSHELRTP Sbjct: 879 SRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLANMSHELRTP 938 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGF++++ +EY+ I +SG++LL+LINE+LDLS+IEAG L+ Sbjct: 939 LNAILGFTQLLGQNYG---LTSQQQEYLQIIQQSGKYLLSLINEVLDLSKIEAGAVTLNP 995 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 + +LI +++ MLQ++A KN+ + ++ + V DE +RQV++NLL NA+KF Sbjct: 996 TNFNLITLLKRINTMLQIKASSKNLVMNIQLQQDIPDYVQTDESKLRQVLVNLLDNAIKF 1055 Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V + S Y ++D GPGI E + F Q + +QG GLG Sbjct: 1056 TDA-GSVTLRVSFVSSVSQLYFEVEDTGPGITPDEQERLFKPFVQTDVGR-RHQQGTGLG 1113 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNHESTQYKC 493 L I+Q ++ GG+ I S + G + + +P + + ++PE+ C Sbjct: 1114 LAISQQYVSLMGGKITIVSVVDGGAKFMFNIPVEVIKSENIDIEYLPEEELTLDDISC 1171 >gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1305 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + ++ + H S + +L+ ++ + + + ++RA+ N AKS Sbjct: 779 LWGLLGAYQNRVPRHWEDSEISLLTRVGDQLGVALQQAELIEELKKAKERADAANQAKSE 838 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLNAILGF++++ N+ ++++G I RSG+HLL+L+N++L++ Sbjct: 839 FLANMSHELRTPLNAILGFTQLLAR---DSSLNQKQQDFVGIIGRSGEHLLSLLNDVLEM 895 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAGR L+E+ L ++ M QL+AQ KN+++ DP + + DE +RQ Sbjct: 896 SKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLIFHCDPDVPQYIKTDESKLRQ 955 Query: 371 VILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 V++NL+ N +KFT G + V V + + ++D GPGI E+ + +F Q Sbjct: 956 VLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEVEDTGPGIGTEELDILFQAFVQTVS 1015 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486 KS +G GLGLPI+Q + GG + S L +G +P T + P H Sbjct: 1016 GRKSQ-EGTGLGLPISQKFVELMGGNISVNSTLHKGSTFSFEIPVTHSESTRVSKPNQTH 1074 Query: 487 E 487 + Sbjct: 1075 Q 1075 >gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 1079 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 10/328 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + + + + + +S + D ML ++++ + L + A + Sbjct: 484 MLAGALAMYKSSARKVTLSDFIKDNFFKVMLISSIAVAVVLLTILMLLQKARKAEAAARK 543 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 E + ++AE N AKS FL++MSH++RTP+NAI+GF+ + Sbjct: 544 AASDTQE-LNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI---D 599 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + K+Y+G S HLL+LIN++LD+SRIE+G+ L E ++L D++ + ++ + Sbjct: 600 DTDRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQ 659 Query: 343 AQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 K +E++ +D + V+ D+ + Q++LNLLSNA+KFT GG V V V +G Sbjct: 660 IYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVR 719 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 IKDNG G+++ + F + + S QG GLG+ I ++I+ GG Sbjct: 720 GCGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTI 779 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484 +++ +G E +P P + Sbjct: 780 EVQTAQGKGTEFTVCVPMRAQTEQRPVE 807 >gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 510 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 155/364 (42%), Gaps = 15/364 (4%) Query: 124 LTLVEPGTWTPEYLTIYKSATLL-----IALSISALSNFMLPY----AVFLSFFPVVVAL 174 L+ P E + L+ I ++ ++ + + A Sbjct: 134 FPLLAPLAKQLEMDHLMAIPLLIGSDTPIDSTLVSMLTQPFMSGKDELIGVVLAGNAEAA 193 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-ELEVAKS 233 + ++ L + + L+ + ++ EK + ELE Sbjct: 194 GKVYAEIVPDGNVQLGLASLASQISSAINSAMLYWALLEERDSLEEKVQVRTRELEAQSR 253 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 L + ++ AE N AKSRFLA+MSHELRTPLNAI+G+SE++ + E + Sbjct: 254 LLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDA-SEWGEWEISEDLEK 312 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +GQHLL LI++ILD+S+IEAGR +L + ++ + + ++ + N + Sbjct: 313 IKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQVD 372 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQYISIKDNGP 410 P +++ D +RQV+ NLLSNA KFT G + + ++ D+G Sbjct: 373 TPPEEITLFTDATKLRQVLYNLLSNATKFT-TDGEIMLKASLCRLRRQPRLEFAVSDSGI 431 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G++E ++ + F Q + G GLGL I++ GG S+ G Sbjct: 432 GMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATFTV 491 Query: 471 ILPN 474 LP Sbjct: 492 SLPL 495 >gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 1183 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 101/490 (20%), Positives = 185/490 (37%), Gaps = 21/490 (4%) Query: 6 KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65 + +D+ S + E + + + + +V + + +L + W Sbjct: 275 NEEGRDLVARTSSVVGRIVSETEAAAIANERRAGAALTTGRQVMMGIAVVTVLGPLLFVW 334 Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 + + E+ L+V Q A+ Sbjct: 335 MYLGRNIVNRLAGLASAMHRIVEGDYHTKVEASGNDEIADMAGELVVFQRALAQLQDSTD 394 Query: 126 LVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 ++ + A + +S +A+ ++ P A Sbjct: 395 ALKESEGRLRTILDTSPLALAISRVSDNAILYVNPRWSELFGSRPDDSNGVDAASFYADP 454 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL--------------IAELEV 230 D L + + +++ + I + + Sbjct: 455 ADRDRVVELVRGQGYLADYESRMRRADGSEFWAMMSAAAIDMDGEPAVCVSTADITKRKE 514 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + E ++ AE+ + AKS FLA+MSHE+RTP+N +L ++++E + + KE Sbjct: 515 QEDALAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLA----QEQKEM 570 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I S LL +IN+ILD S+IE+G+ EL +SL D++ +L RA EK I + Sbjct: 571 ARVIRDSATALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGL 630 Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 IDP+L ++ D +RQ++ NL NAVKFT G V ++ + +I D G Sbjct: 631 MTFIDPALPDLFLGDATRLRQIVTNLAGNAVKFTDK-GYVRISAEAAADGHVRFTISDTG 689 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + + F Q +I G GLGL I + ++A G+ + S++ +G Sbjct: 690 IGLNDEQQAKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDSQVGQGSSFW 749 Query: 470 AILPNTRVLN 479 LP +V Sbjct: 750 FSLPLEQVGE 759 >gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37] gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 968 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 30/412 (7%) Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 + EV V+ + +G+ + + PG + +I + L+ L Sbjct: 295 AISYNDPFSGDREVEVFTSYFKAFDWYLGVVVPMAEIKAPGKNLIKRQSIIIALISLVGL 354 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + L F + + AL TQ + I + + + Sbjct: 355 AAALLLVFRISRP-LNTLASYAKALPTQDFSQQNPDTIKIKRLAMKYSDEVGRLAESFV- 412 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + A + + ++ A + + AKS FLA+MSHE+RTP+N +LG Sbjct: 413 -------------FMEASIRKNIQQALHEKEIAVKASQAKSEFLATMSHEIRTPMNGVLG 459 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +E++ + + ++ I SG LL++IN+ILD S+IEAG+ +L + L Sbjct: 460 MTELVLETELSS----EQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQ 515 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++++ + L A++K +++ + + + V D +RQV+ NL+SNA+KFT G Sbjct: 516 ELIKHLVTSLSPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQR-GE 574 Query: 389 VHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V V+ I ++D+G GIA + SF Q + G GLGL I Sbjct: 575 VLVSAVIFEQSATALSLQIRVRDSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAI 634 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVL--NFIPEDNHESTQY 491 ++ ++ GG S+L +G L P ++L +P E Q Sbjct: 635 SKQLIEMMGGSIGFSSELGQGTTFWFDLKLKPTEQILSDETLPVSTLEQQQI 686 >gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 903 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 101/364 (27%), Positives = 174/364 (47%), Gaps = 24/364 (6%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 T + +LI ++ S L F L +V P+ + + LD ++G L Sbjct: 173 RDTFFAVIMVLIGIAFSTLFGFRLVKSV---TQPITDMVQAVHKIREGRLDTRVSGQLTG 229 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEENL 247 L + K+ + + + + ++E+ D +KRA+E Sbjct: 230 ELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAAR 289 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ + ++ P + +Y+ I +S ++LL +IN+ Sbjct: 290 VKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKSARNLLGIIND 345 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILD S++EAG+ +L SL D + E + +L A +K +E+ ++D + + D Sbjct: 346 ILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPM 405 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI--KDNGPGIAEGEIPTVL 421 ++QV+ NL NA+KFT G V V + SG +++ +D G GI+E + + Sbjct: 406 RLQQVLTNLTGNAIKFT-EHGNVDVRIEQIGSASGSKVRLNVLIRDTGIGISEEQQRQLF 464 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q +I G GLGL I Q ++ GGQ S+L +G L ++ + Sbjct: 465 QAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVFSFSLDLE--VSPL 522 Query: 482 PEDN 485 P+ + Sbjct: 523 PQTD 526 >gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1007 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ ++ AE N AKS FLA+MSHE+RTP+N I+G + +++ + P Sbjct: 605 ITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTTVITP--- 661 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ +I S L LI++ILDLS+IE+G+ EL S SL +RE + Q + Q Sbjct: 662 -EQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQFQIQ 720 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K + + I ++ + D+ RQ++LNL+ NA+KFT G + +T + + Sbjct: 721 HKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQ-GSIAITARLVAQQDDLA 779 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +SI D G G++ ++ + F Q +I G GLGL I Q ++ GG+ Sbjct: 780 LIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIWAE 839 Query: 460 SKLREGVEVIAI----LPNTRVLNF 480 S G +P + + Sbjct: 840 STEGNGSSFHIEMRFFIPESSAIQS 864 >gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1550 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 HL + + + L+ + + R +AE + AKS FLA+MSHE+RTP+N Sbjct: 848 HLLRQIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMN 907 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG + ++ + N+ ++++ I SG LL LINEILDLS++EAG L Sbjct: 908 AVLGMTGLMLETLL----NQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLN 963 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L V E + +L +A K +EI + D +RQ+++NL+ NA+KFT Sbjct: 964 FNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT- 1022 Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + V S + ++ D+G GI + + T F Q + G GL Sbjct: 1023 SFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGL 1082 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL I + ++ GG+ + S+L +G + +P + L + Sbjct: 1083 GLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPV 1123 >gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 587 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GF+E + M + +T + ++ I + + Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--HDAQTLEYFLTIILKESER 408 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS+IE + L+ S + L ++++E I+ML+ +A +K I + + + Sbjct: 409 LQHLIQDLLDLSKIEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCY 468 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++ D ++Q+ +NL++NA+ +T GGRV V V + ++ + D G GI + EIP + Sbjct: 469 MYGDLHRLKQIFINLINNAIAYTPAGGRVTVYVE-KDEKELHVHVSDTGIGIEQKEIPRI 527 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ H G ++S++ G Sbjct: 528 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTVHF 579 >gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32] gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32] Length = 937 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I RS +LL++IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + S + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 771 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 18/374 (4%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VAL 174 G+ LT+ L+ L++ ++ P+ + Sbjct: 144 LSGVLPAQLTVEFSQQGQYLSTLENLLTLFLVMLALIMIAMVPALRFSRQLTQPISDMVS 203 Query: 175 STQAIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + Q I + L+ + + + + + + + Sbjct: 204 AVQRIRDGDLSMAIHTQAKGELSELETALRQMVAALADAQTELQQNVDQATQDLRETLET 263 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E+ D RK A + + KS FLA+MSHE+RTPLN ILGF+++++ M P Sbjct: 264 IEIQNIELDMARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKLLDRSPMTP----RQ 319 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++Y+ IH+S + LL +IN++LD S+IEAG+ L + ++L D++ + +L AQE+ Sbjct: 320 EDYLSTIHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERG 379 Query: 348 IEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---- 402 +E ++ D +RQV+ NL+SNA+KFT G V V RG Sbjct: 380 LEQAAIIYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQ-GSVVVRAMLEEDRGAEAIIK 438 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I++ D GPG+ + ++F Q + + E G GLGL I++ ++ GG+ I S+ Sbjct: 439 ITVTDTGPGLNPEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSRE 498 Query: 463 REGVEVIAILPNTR 476 G L R Sbjct: 499 GRGSTFWFTLRTER 512 >gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1421 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 144/277 (51%), Gaps = 11/277 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I E + A+ +++AEE N++KSRFLA+MSHE+RTP+NAILG S+V+ M P Sbjct: 683 LQDITERKAAERAMLIAKEQAEEANISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMAP 742 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 K+++ IH S + LL +IN+ILD S+IEA + EL +L +++ + ++ Sbjct: 743 ----KEKDFLLKIHSSSKMLLGIINDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQ 798 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 A E +E++ + + DE + QV+ NLLSNA+KFT G + + + Sbjct: 799 SAAEHGLELYFHKKSDVPEIIVGDELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHEN 858 Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I S+ D G GI++ +I + F Q ++ G GLGL I++ ++ GG+ Sbjct: 859 RAIIGFSLTDTGIGISDEDISKLFQPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELS 918 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 + S EG + V E +HE + + Y Sbjct: 919 LSSVKGEGSTFSFDI---DVEVVSWEQSHEHIENEGY 952 >gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 642 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +IA+ + ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I + Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E +EY+ I +SG LLN+IN+ILD S+IE+GR EL E SL + E + M+ +A Sbjct: 296 DEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKA 355 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 +KNIE+ + + V+ D +RQV++NLLSNA+KFT G V ++V + Sbjct: 356 LDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCVRDQANS 414 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G G+ +I + F Q + +G GLGL I + ++ GG Sbjct: 415 KLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWY 474 Query: 459 RSKLR-EGVEVIAI 471 +G Sbjct: 475 ERNPNQQGSVFTFT 488 >gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS] gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS] Length = 1262 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 140/275 (50%), Gaps = 10/275 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + K+ +I + + +L+ + +++AE N AKS FLA+MSHE+R Sbjct: 506 FSQRIVKKAEDEIGQLGTSFNTMADDLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIR 565 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N I+G +++ + ++Y+ + S Q LL +I++ILD S+IEAG ++ Sbjct: 566 TPMNGIIGLTQLALKTDLTA----EQQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQM 621 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 SL ++ +L +R +EK +E+ ID S+ + D + QV++NL++NA+ Sbjct: 622 ELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAI 681 Query: 381 KFTAIGGRVHVTVG---WTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + + + T+ + SIKD+G GI+ I + +F Q + Sbjct: 682 KFTDQ-GEILIKIEMLNLTAKQITLCFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFG 740 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + ++ GG + S+L +G Sbjct: 741 GTGLGLAICKRLVEMMGGNIWVESQLEQGSSFSFT 775 >gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1136 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 108/269 (40%), Positives = 153/269 (56%), Gaps = 2/269 (0%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + Q + + I L + E + AE N AKS FLA+MSHELRTPLNA+LGF++ Sbjct: 864 DLRNTQKDLEASIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELRTPLNAVLGFAQ 923 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ E G L N+ YKEYIG I SGQHLL LI ++LD+S IEAGR L ES +++ D++ Sbjct: 924 IMADEMWGSLGNDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTLRESNVNISDVI 983 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + +L +A+ I + + L + D +++++LNLL NA+KFT GG V +T Sbjct: 984 VTSMRLLSSQAENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALKFTPAGGAVTLT 1043 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMAN 451 I ++D G GI+ ++ VL F QG I E +GVGLGLPI +S+M Sbjct: 1044 ASHDQSG-VTICVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLGLPITKSLMEL 1102 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNF 480 HGG I SK +G P +R L Sbjct: 1103 HGGTLSIDSKEGKGTTACVHFPASRSLAA 1131 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL D++ ++ L+AQ Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT G + ++ Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] Length = 756 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 103/283 (36%), Positives = 155/283 (54%), Gaps = 5/283 (1%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSH 258 +T + + Q + L + +++ E + RAE N AKS FLA++SH Sbjct: 471 RLTESEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRAEAANQAKSEFLANISH 530 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAI+GFS+++ E GPL + Y +Y DI+ SG +LLN+IN+ILD+S+IEAGR Sbjct: 531 ELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVINDILDMSKIEAGR 590 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + ++ + + ++ A EKNI I + +L V D++ ++QV+LNLL+N Sbjct: 591 MSIETEVVNASEAAEDAARIITGAASEKNIVISADVADNL-HVDVDKRALKQVLLNLLAN 649 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT G V + G + D G GI+E +I + F Q QG Sbjct: 650 AVKFTPDHGTVTLKARPR-GDKVRFEVTDTGIGISERDIERLAKPFVQVENQFTKTHQGS 708 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL IA+S++ HGG+ I S++++G V LP R + Sbjct: 709 GLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLPLARTDSTQ 751 >gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 835 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 13/356 (3%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + L + + I ++ A+ N + V V + Sbjct: 210 IPLASTYAEANSFSLKLSALLFGIIAALFAVQNRIFERLVLKPLAVVTEG-------ARR 262 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + L + NV +L ++E + RK AE Sbjct: 263 IAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKDAE 322 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AKS FLA+MSHE+RTP+NAI+G ++++ + + + + D + + LL Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLDDSTTAAESLLI 378 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 +IN+ILDLSR+EA R EL A+ L V + ++A K I + + VW Sbjct: 379 IINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVW 438 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVL 421 D +RQ++ NLLSNA+KFT GG V + G ++ D G GI + + ++ Sbjct: 439 CDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIF 498 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F Q + G GLGL I + ++ GG + S+ G LP Sbjct: 499 EMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPA 554 >gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] Length = 1656 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 142/262 (54%), Gaps = 12/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E++ +E ++RA+ + AKS FLA+MSHE+RTP+NAI+G S + +G ++N Sbjct: 1033 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1088 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI +HRSG LL++IN+ILD S+IEAG+ + + ++ I +++ +A Sbjct: 1089 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1148 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK + + IDP L + + D + QVILNL+ NA+KFT G V +TV + Sbjct: 1149 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTET-GSVSLTVALVESDDNSL 1207 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI++ + + +F Q G GLGL I+Q ++ GGQ + Sbjct: 1208 TMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVG 1267 Query: 460 SKLREGVEVIA--ILPNTRVLN 479 S +G E LP + V Sbjct: 1268 SVFGQGSEFSFVLTLPRSSVEE 1289 >gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1039 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 92/272 (33%), Positives = 131/272 (48%), Gaps = 5/272 (1%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++ E E R AE N K FLA++SHELRTPLNAILG+++++ Sbjct: 633 TDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRK 692 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + T + I R+ + L LI ++LD+SRI G LS I L+ +V I Sbjct: 693 F---DEATTARALETIERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDT 749 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ A+ K I I K DP + V D ++QV+ NLLSNAVKFT+ GG V V + Sbjct: 750 VRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIES 809 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D G GIA +P V F Q + + G+GLGL I + ++ HGG + Sbjct: 810 -SVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSV 868 Query: 459 RS-KLREGVEVIAILPNTRVLNFIPEDNHEST 489 S + +G I LP V S+ Sbjct: 869 ESLGVGQGATFIVNLPMKAVYVEANTAEQPSS 900 >gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 969 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 12/296 (4%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + ++ + + + + +E+ D RK A E + KS Sbjct: 243 LESGLNAMAAALSKAQADMQQNVDQATEDLRETLETIEIQNIELDFARKEALEASRIKSE 302 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN I+GF+E++ ++ ++++ I +S + LL +IN+ILD Sbjct: 303 FLANMSHEIRTPLNGIIGFTELLLKGSLAR----QQRDHLNTIRKSSEILLTIINDILDF 358 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAG+ L DIV E ++ML A +KN+++ + + + + D ++Q Sbjct: 359 SKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLVYNDVPNNLMGDPLRLKQ 418 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSF 424 +I NLL+NA+KFT G V + +S+ D G G++ + ++ +F Sbjct: 419 IITNLLNNAIKFTHT-GEVVLRASLEEEDASNGSVTLRVSVADTGMGLSRAQQRSLFDAF 477 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 Q + G GLGL I++ + GG+ + S+L +G L +TR Sbjct: 478 SQADASTARQYGGTGLGLAISKRLAEEMGGKIGLESELGKGSTFWFTLTSTRASQH 533 >gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1027 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 158/285 (55%), Gaps = 9/285 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L ++ +L A + + ++ A+ N AKS FLA+MSHELRTPLNAILGF++++ Sbjct: 531 LGVAVQQAELFAHTQHQAEELKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLM 590 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + +++YI +++SG+HLL LIN++L+LS+IEAGR L+E+ L ++ Sbjct: 591 QRDV---SLKADHQQYIKIVNKSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCS 647 Query: 335 CIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +L+L+AQ KN+ + +ID + DE +RQV++NLL NA+KFT G V + V Sbjct: 648 LETLLKLKAQAKNLSLRFEIDSQVPPFIKNDENKLRQVLINLLGNAIKFTNK-GNVTLRV 706 Query: 394 ---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +++D GPGI E+ + +F Q +S +G GLGL I+Q+ + Sbjct: 707 INQELEQLNTLIFAVEDTGPGIPPEEVQDLFKAFKQTKTGRESQ-EGTGLGLRISQNFVQ 765 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GG+ I S++ +G LP + V + + +Q A Sbjct: 766 MMGGKITIESEVGKGSCFSFALPISVVEATPTVPSPDISQVSGLA 810 >gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 642 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +IA+ + ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I + Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E +EY+ I +SG LLN+IN+ILD S+IE+GR EL E SL + E + M+ +A Sbjct: 296 DEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKA 355 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 +KNIE+ + + V+ D +RQV++NLLSNA+KFT G V ++V + Sbjct: 356 LDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCVRDQANS 414 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G G+ +I + F Q + +G GLGL I + ++ GG Sbjct: 415 ELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWY 474 Query: 459 RSKLR-EGVEVIAI 471 +G Sbjct: 475 ERNPNQQGSVFTFT 488 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 12/292 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + L + + LI EL++AK +R+ A N AKS FLA+MSHE+RTP+N Sbjct: 144 QITDITRQELRVR-QLKGLIRELKLAKEELKVSREMAVVANRAKSEFLANMSHEIRTPMN 202 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILGF ++ T+ N +Y+G + + Q L+ L+ ++LD+S+IE+G+ + + Sbjct: 203 AILGFVDL----TLATELNAEQSKYLGMVRSAAQSLMRLLEDVLDISKIESGQLVVEQQP 258 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384 SL ++R + +L ++A +K +++ +I + V D + QV++NLLSNAVKFT Sbjct: 259 FSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGDANRLTQVLVNLLSNAVKFTD 318 Query: 385 IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + + + IS ++D G GIA + V F Q + G GL Sbjct: 319 A-GEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTRRFGGSGL 377 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GL I + ++ N GG+ + S+L +G LP + P+ E + Sbjct: 378 GLAIVRQLVENMGGRVWVESELGKGSTFYVTLPFG-IAAPQPDQYAEDVSER 428 >gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] Length = 2035 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 11/279 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F+ ++ K +D+ E E A + AEE KS FLA+MS Sbjct: 1262 LFWARLSGRAIDYLDKEKGVVVVVEDISTEKE-ALEAIQRAKSLAEEATQVKSAFLANMS 1320 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NAI+G + + + + Y+ I + +HLL +IN+ILD S+IEAG Sbjct: 1321 HEIRTPMNAIIGMAHLALQTELSN----QQRNYLVKIDSASKHLLGIINDILDFSKIEAG 1376 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L D++ + ++AQEK +E+ I+ ++ + + D + Q+++NL+ Sbjct: 1377 KMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIETNIPTALRGDPLRLGQILINLV 1436 Query: 377 SNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NA+KFTA G + + V + + D G GI E + + +F Q ++ Sbjct: 1437 NNAIKFTAQ-GEIRLFVKLLAQEAKQVHLLFEVHDTGIGIDEAQQAKLFEAFSQADLSTT 1495 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + ++ G+ ++S L EG Sbjct: 1496 REFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFSFS 1534 >gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 734 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 107/288 (37%), Positives = 161/288 (55%), Gaps = 3/288 (1%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 ++++ L + + + I + A+ +++AE + AKS FLA Sbjct: 448 GSIAWVNLTLSALRRD--GRVEYLIGVTEDIERRKQAEVQLLAAKEQAESASRAKSDFLA 505 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSHELRTPLNAI+GF+E + + +GP+ E Y+EY GDI SG+HLL +I +ILDL++I Sbjct: 506 GMSHELRTPLNAIIGFAETMYSQVLGPI-PERYREYAGDIAASGRHLLGIITDILDLAKI 564 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGR EL E+ + + +V I +L+ R +++ I SL + ADE+ +RQV++N Sbjct: 565 EAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERRIRQVVIN 624 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LL+NAVKFT GG V V+ T+ G + + D G G+ + E+ + F Q I Sbjct: 625 LLANAVKFTPHGGSVSVSANLTTDGGLALHVSDTGIGMTDEEMSQAVEPFVQVDARIARR 684 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +G GLGLP+ +IM H G I S+ +G V P RVL+ P Sbjct: 685 HEGTGLGLPMVAAIMEMHRGTIAIASRPNQGTTVTVTFPRDRVLSADP 732 >gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 923 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 28/397 (7%) Query: 103 VYVWRIW-LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 Y WR L G L L ++L Y L+ + A++ + Sbjct: 122 AYSWRRIDFLAPAQVAGQPAGWLRLSTDLGGAYQHLLGYLGLILVEMAAALAIALHLQSR 181 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 V P+ ++ H+ D+S+ + A L +++ E+ Sbjct: 182 QVGRLIEPLQ-------DLTRHMADVSVGRLDIRAADSRVTEIDQLVTGFNQMVEQIRER 234 Query: 222 DDLIAEL--------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 D ++ E ++ AE + AKS FLA+MSHE+RTP+N +LG +E+ Sbjct: 235 DHWLSTHLGNLEQIVEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTEL 294 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + +G T ++++ + RSG+HLL++IN+ILD S+IEAG+ EL L +++ Sbjct: 295 L----LGTELEPTQRQFVEAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLE 350 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + + A+ K +E+ + P V D +RQ++ NLL NAVKFT G + + Sbjct: 351 ESLELFSQPARRKGLELVADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTET-GEILLR 409 Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G + + D G GI + F Q + G GLGL I + + Sbjct: 410 LLVVEPRDNGLKLALVVSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHL 469 Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPE 483 + GG+ + S +G LP ++ PE Sbjct: 470 VDMMGGRIHVESTPGKGAAFTVELDLPLGKLPVASPE 506 >gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] Length = 937 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLSGVFAFRLMHDV---TQPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I RS +LL++IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTDYLQTIERSANNLLSIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + S + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 365 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 421 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 422 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 480 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 481 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 539 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 540 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 599 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 600 SEEGKGSTFEFS 611 >gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 928 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 13/298 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + VK+L+ A + + + + ++ A+ N AKS FLA+MSHELRTP Sbjct: 417 SRKWLHHEVKLLTQIARQLGVAIYQAELFTQLQQAKEAADTANRAKSEFLANMSHELRTP 476 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGF++++ +EY+ I +SG++LL+LINE+LDLS+IEAG L+ Sbjct: 477 LNAILGFTQLLGQNYG---LTSQQQEYLQIIQQSGKYLLSLINEVLDLSKIEAGAVTLNP 533 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 + +LI +++ MLQ++A KN+ + ++ + V DE +RQV++NLL NA+KF Sbjct: 534 TNFNLITLLKRINTMLQIKASSKNLVMNIQLQQDIPDYVQTDESKLRQVLVNLLDNAIKF 593 Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V + S Y ++D GPGI E + F Q + +QG GLG Sbjct: 594 TDA-GSVTLRVSFVSSVSQLYFEVEDTGPGITPDEQERLFKPFVQTDVGR-RHQQGTGLG 651 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNHESTQYKC 493 L I+Q ++ GG+ I S + G + + +P + + ++PE+ C Sbjct: 652 LAISQQYVSLMGGKITIVSVVDGGAKFMFNIPVEVIKSENIDIEYLPEEELTLDDISC 709 >gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1191 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 156/327 (47%), Gaps = 15/327 (4%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----AEL 228 L S+ S F I Y + ++ ++ + + EL Sbjct: 754 LVASFEFSIKPYFHQTTTFYILTASCFLLIGYLINYLRLRASRLHHQRLEELVGQRTQEL 813 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ AE N KS F A++SHE+RTP+N+I+GF++++ ET+ N T++ Sbjct: 814 QRQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDETV----NPTHQ 869 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ + +SG LL++I+++LD+S++EA + L +L R+ + M Q + EK + Sbjct: 870 HYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKLSEKAL 929 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYI 403 ++ DP++ S + D RQV+LN++ NA+KFT G++ + + Sbjct: 930 DLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDS-GKISIRLELVRQYALHAHVRC 988 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +I D G GI E ++ + +F Q S +E G GLGL I++ ++ GQ + S++ Sbjct: 989 AISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVVSRVG 1048 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G P + + PE + + Sbjct: 1049 RGSTFTVDFPKIPISDSAPEQKAGAPE 1075 >gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 974 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 160/331 (48%), Gaps = 6/331 (1%) Query: 148 ALSISALSNFMLPYAVFLSFF---PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L+ L + ++V P A I + +++ + L FF Sbjct: 374 GLAGRVLVSGAPEWSVGDPTLAADPRAPAAVEHGIRAGFGFPVTVGRDVVAVLEFFARDA 433 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 S ++++S + + E + A+ + ++ AEE + AKS FLA+MSHELRTPL Sbjct: 434 SPPDASLLRVMSNIGAQLGRVIERKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPL 493 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GF+ ++ L + + E + I S +HLL+LIN ILDL+++EAGR E+ S Sbjct: 494 NAIIGFTRLVMRRAKDVLPVKQF-ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPS 552 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++ C+ ++ + + + + + + + DE+ +RQ+++NLLSNA+KFT Sbjct: 553 DFALEPVLDLCLRTVEPLVKNEGVRLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTE 612 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V + V ++ D G GI G + + F Q + + G GLGL I Sbjct: 613 A-GSVTLRVRSVDEG-IEFAVMDTGIGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAI 670 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + GG+ + S+ EG +P Sbjct: 671 SHRLARLLGGRIDVESREGEGSTFTLTIPPR 701 >gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 1756 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 13/320 (4%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAELEVAKS 233 +++ ++ + + K LS + E Sbjct: 964 LAPLLAGEQRHLAQEMRYRKPDGSLRWADMRAVVLKDYQGGLSALVLTMSDVTERRQINE 1023 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + ++ A+ + AK+ FLA+MSHE+RTP+NAI+G +++ + +Y+ Sbjct: 1024 ALRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTDL----PPRQADYLRK 1079 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + Q LL +IN++LD S+IEAGR EL + +L +++ + + +RA+EK +E+ Sbjct: 1080 IDSASQSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLFA 1139 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKD 407 ++P + + D + Q+++NLLSNA+KFT G V + + G S++D Sbjct: 1140 VEPEVPARLNGDMLRLGQILINLLSNAIKFT-DHGEVVLAIRQLDGAPPGQTRLTFSVRD 1198 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ + + SF Q + G GLGL I+Q +++ GGQ + S G Sbjct: 1199 TGIGMSPEQQARLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMGGQIQVNSAAGAGST 1258 Query: 468 VIAILPNTRVLNFIPEDNHE 487 + + E Sbjct: 1259 FHFSIELALPEQPPQPELFE 1278 >gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1048 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 10/297 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 M ++ + + I+ + A+ R+ AE N KS Sbjct: 378 VMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEAEKALVTARQAAEAANRTKS 437 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+NA++G S + + P ++Y+ +H S LL ++N+ILD Sbjct: 438 DFLANMSHEIRTPMNAVIGLSHICLQTELTP----KQRDYLEKVHNSAHSLLGILNDILD 493 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 LS+IE+GR E+ E +L +++ ++ R K ++ + P + + D + Sbjct: 494 LSKIESGRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPVNLRGDPLRLG 553 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFG 425 QV+ NL+ NAVKFT G + VTV + Q I+ ++DNG G+ + + + F Sbjct: 554 QVLTNLVGNAVKFTEE-GEIAVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFS 612 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 Q + G GLGL I++ ++ GG+ + S+ +G I LP + P Sbjct: 613 QADTSTTRKYGGTGLGLSISRQLVELMGGEIRVESEAGKGSSFIFTLPLQKDAAISP 669 >gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 859 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 14/293 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 +K S I + ++ + + AEE N+ KSRFLA+MSHE+RTP+N Sbjct: 459 WNSFVIKEYSLIYSIGRDITKRMESEDELKKAKIAAEEANIEKSRFLANMSHEIRTPING 518 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +++ + + +EY+ + S HLL++IN+ILD+S+IE+G+++L Sbjct: 519 IMGMTDLTLMTELTN----EQREYLNMVKASSSHLLDIINDILDISKIESGKFKLDLVPF 574 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA 384 +L + + + + + + A +K IE+ IDP++S + D + Q+++NLLSNA+KFT Sbjct: 575 NLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNIIGDPSKLDQILMNLLSNAIKFTD 634 Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + V G S+ D G GI E ++ + +F Q + G GL Sbjct: 635 R-GNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDKLFKTFSQIDDSYTKKYGGTGL 693 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI---LPNTRVLNFIPEDNHESTQ 490 GL I++ ++ G + SK EG P+ ED++E Q Sbjct: 694 GLSISKHLVNMMNGDIWVTSKHNEGSCFYFTAEFFPDENSSKCFLEDDNEINQ 746 >gi|46204504|ref|ZP_00049895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 349 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 135/227 (59%), Positives = 168/227 (74%) Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLNAILGFSEV++ E G Y+EY DIH SG HLLNLINEILDLSRIE Sbjct: 1 MSHELRTPLNAILGFSEVMKNEVFGVHTAPAYREYANDIHDSGMHLLNLINEILDLSRIE 60 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGRY+L+E A+ L V EC M+ LRA+ K ID SL +WADE+ +RQ++LNL Sbjct: 61 AGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFTSLIDDSLPRLWADERALRQIVLNL 120 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNAVKFT GG + + VGWTS GQY+S+KD+GPGI E E+ TV++SFG+GS+AIK+AE Sbjct: 121 LSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRGSLAIKTAE 180 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 QG GLGLPI + ++ HGG F ++SK REG EVI P +R ++ +P Sbjct: 181 QGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPASRGMDTLP 227 >gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069] gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069] Length = 950 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 169/398 (42%), Gaps = 23/398 (5%) Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 W+ + +G + ++ ++ TL I + + F+ Sbjct: 148 PENYESWQNYSQANAQLLG----YVAVMMTNEFSAISRYNTILTTLFITIIGLLIGGFLA 203 Query: 160 PYAVFLSFFPVV-VALSTQAIMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSN 211 P+ + I H+ L + + ++ + Sbjct: 204 RRMSMSVTTPIEKMVEGINRIKDGHLDTRLESEASAELLTLQEGINLMAENMEHNQEEMQ 263 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + + + LEV D R++A E + K+ FLA+MSHE+RTP+N ++GF+ Sbjct: 264 LAVDQATEDLRETLETLEVNNLELDIARRQALEASRIKTEFLANMSHEIRTPMNGVIGFT 323 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ + K+++ DI RS LL++I++ILD S+IEAG+ L + Sbjct: 324 ELLLKTELNN----KQKDFLFDIKRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLREC 379 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 V + ML A +K IE+ I + + D ++Q+I NL++NA+KFT G V Sbjct: 380 VDDIFRMLGPNANKKGIELVSLIYSDVPKALLGDPIRIKQIITNLVNNAIKFT-KSGSVE 438 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + S + +KD+G G+ + + + +F Q + K G GLGL I++ Sbjct: 439 LYAEVESENQKGLKLKVQVKDSGIGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISK 498 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 S++ GG + S +G L R + +PED Sbjct: 499 SLVEKMGGNIGVNSTAGDGSTFWFTLQCERT-DSLPED 535 >gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 585 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GF+E + M + +T + ++ I + + Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--KDEQTLEYFLSIIWKESER 408 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ ++LDLS+IE + L + L D++RE +M Q +++EK I+ + P Sbjct: 409 LQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDFYLH-APKSVY 467 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D ++Q+ +NL++NA+ +T GG+V + + + + +KD G GI E EIP + Sbjct: 468 MEGDANRIKQIFINLITNALTYTPKGGKVELMIE-EKEKEILVHVKDTGIGIDEQEIPRI 526 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G ++S + +G P Sbjct: 527 FERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPKQ 581 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL D++ ++ L+AQ Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT G + ++ Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] Length = 1517 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 13/355 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A L V+ A+ + + L + + + I Sbjct: 309 LAAHADTYLAQRLRNLFIALGIWVLAAILVVFALGITRR---LRQNVTDLGNVLSRIGDL 365 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + + +E A L + AE+ N AKS FLA+MSHE+RTPLN Sbjct: 366 TNQHEHIDVRTSEGVNKAYSLIEDALDLIAYQKGAAEDANKAKSIFLANMSHEIRTPLNG 425 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GF+E+++ + +E ++Y+ I +S ++LL +IN ILD+S+IE+ + EL + Sbjct: 426 IIGFTELLKNTDL----DEEKRDYVDTIEKSSENLLTIINNILDVSKIESNKVELEDILF 481 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + I + + +A EKNI+I IDP+L ++ D +++V++NL+SNAVKFT Sbjct: 482 NPIQDFESAVEIYVAKAAEKNIDILLYIDPTLVHHLYGDITKIKEVLINLMSNAVKFTPE 541 Query: 386 GGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + V + + S++D G GI+E ++ V +F Q I G GL Sbjct: 542 HGTIVVEILREPSKAPGEAIVTFSVEDTGIGISEDKLANVFNAFSQADSTITRKYGGTGL 601 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GL I+ +A GG+ ++S + +G L + ES + +A Sbjct: 602 GLTISSKYVAMMGGKLQVKSTVGKGTRFYFTLAFKETQKTDADAVFESIKGLNFA 656 >gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1358 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 148/320 (46%), Gaps = 14/320 (4%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + + + + + A + L ++ +E+ +E Sbjct: 813 VSLAIVVLAPWWATWWFRSTVGLVIAGMAFGAYQSRVRILRLGAARLERQVSER---TSE 869 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 L + AE N AK+ FLA+MSHELRTPLNAILGFS ++ + +E Sbjct: 870 LLERTGELQIAKDAAEAANRAKTIFLANMSHELRTPLNAILGFSNLLREGDV----SEWQ 925 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + + I+RSG+HLL+L++E+LD+++IEAGR L + L +VR+ + M+ RAQ K Sbjct: 926 RNDLDIINRSGEHLLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKG 985 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--- 402 + + L V AD +RQV++NL+ NA+KFT G + + G G++ Sbjct: 986 LALLHADSSGLPRYVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLT 1045 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++D G G+A + + F Q A G GLGL I + ++ GG + S Sbjct: 1046 FYVEDTGCGVAPEDHERIFEPFVQVGPAATKK--GSGLGLAITRQLVEMMGGTVSVESTP 1103 Query: 463 REGVEVIAILPNTRVLNFIP 482 +G +P + P Sbjct: 1104 GKGSRFRVEVPVYAHEDAGP 1123 >gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1242 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 12/249 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + R+ A E + KS+FLA+MSHE+RTP+N +LG + ++ + K+++ Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQA 622 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S HLL++IN+ILD S++EA EL E L + + I +L +A+ K IE+ Sbjct: 623 IRTSADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAI 682 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIK 406 +D ++ + D +RQV+LNL+SN +KFT G V + V ++ Sbjct: 683 VDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLTLRYEVQ 741 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI V +F Q + G GLGL I + ++ GG+ + S + +G Sbjct: 742 DTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGS 801 Query: 467 EVIAILPNT 475 LP + Sbjct: 802 TFWFTLPFS 810 >gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 835 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 13/356 (3%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + L + + I ++ A+ N + V V + Sbjct: 210 IPLASTYAEANSFSLKLSALLFGIIAALFAVQNRIFERLVLKPLAVVTEG-------ARR 262 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + L + NV +L ++E + RK AE Sbjct: 263 IAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKDAE 322 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AKS FLA+MSHE+RTP+NAI+G ++++ + + + + D + + LL Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLDDSTTAAESLLI 378 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 +IN+ILDLSR+EA R EL A+ L V + ++A K I + + VW Sbjct: 379 IINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVW 438 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVL 421 D +RQ++ NLLSNA+KFT GG V + G ++ D G GI + + ++ Sbjct: 439 CDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIF 498 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F Q + G GLGL I + ++ GG + S+ G LP Sbjct: 499 EMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPA 554 >gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 1320 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + +S E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 575 LTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 630 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL ++ ++ +AQ Sbjct: 631 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 690 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 EK IE IDP + + D + QV++NL NAVKFT G + V+V Sbjct: 691 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 749 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KD G GI + +I + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 750 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 809 Query: 460 SKLREGVEVIAIL 472 S + G + Sbjct: 810 SAVGMGSTFTFTI 822 >gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1550 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 HL + + + L+ + + R +AE + AKS FLA+MSHE+RTP+N Sbjct: 848 HLLRQIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMN 907 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG + ++ + N+ ++++ I SG LL LINEILDLS++EAG L Sbjct: 908 AVLGMTGLMLETLL----NQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLN 963 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L V E + +L +A K +EI + D +RQ+++NL+ NA+KFT Sbjct: 964 FNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT- 1022 Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + V S + ++ D+G GI + + T F Q + G GL Sbjct: 1023 SFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGL 1082 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL I + ++ GG+ + S+L +G + +P + L + Sbjct: 1083 GLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPV 1123 >gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 1138 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 10/298 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSR 251 L ++ E ++ LE+ D+ RK E+ + KS Sbjct: 427 LLEASEEELRVQQEELTQTNNELEEKAKLLELKNEDLDKARKNITDKINEVEQASKYKSE 486 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A+MSHELRTPLN+IL +++++ LN + K Y IH +G LL+LINE+LDL Sbjct: 487 FMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIK-YATVIHSAGSDLLHLINELLDL 545 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 ++IE+G+ +L E I + + R + ++ A+EK+I IDP + DE + Q Sbjct: 546 AKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPSTFLCDEYRLEQ 605 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V+ NLLSNA KFT GG++ +T + ++D+G GIA + + +F Q + Sbjct: 606 VLKNLLSNAFKFTLNGGKIELTYKHV-NGNIHFIVQDDGIGIAPEKQKLIFEAFKQEDGS 664 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL I + + GG+ + S+ +G ILP + E+ Sbjct: 665 TSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILPYRPAQKNDIHEEDEN 722 >gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 846 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + L + E+ L ++ AE N AKS FLA+MSHELRT Sbjct: 391 LQDRVLDLQHTSLQLEQERAKLT----RTAQDLSIAKEAAENANRAKSAFLATMSHELRT 446 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N +LG ++++ + + ++ + I SG+ LL ++N+ILDLS++EAGR EL Sbjct: 447 PMNGVLGMADLLLSGPL----TQEQRDGVTTIRESGECLLTILNDILDLSKLEAGRLELE 502 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 S + ++ + +L+ A+EK + + + + + + +D +RQ++ NL+ NA+K Sbjct: 503 PEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGHIPQRIMSDPTRLRQILFNLVGNAIK 562 Query: 382 FTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 FT G V V++ + +++D G GI E +P + T F Q +I Sbjct: 563 FTPQ-GEVSVSLAARACDDPDTAELVFTVRDTGIGIPEAMLPRLFTRFQQADSSISRTYG 621 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I + + G + S +G LP RVL+ D + Sbjct: 622 GTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRLPV-RVLSEGKADTQPAA 673 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 13/292 (4%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRAEEENLAKSRFLA 254 Y + + L + ++ L ++ + + + + AE N AKS FLA Sbjct: 1261 YHGEVVRRRIHSQLELKRHRERLEKQVRMRTAELELATREAELRKDEAEAGNRAKSEFLA 1320 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSHE+RTPLNAILG E++ + + + +G+ LLNL+NE LDL++I Sbjct: 1321 IMSHEIRTPLNAILGTHELLSESALSS----EQQRLMEISRNAGELLLNLVNETLDLAKI 1376 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EAG+ +L + L +V E + ++ A+ K + + ++ + V D +RQ+++ Sbjct: 1377 EAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMALEVPRFVMGDPDRLRQILV 1436 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NLLSNA+KFT G V + + + + D G GIA + + F Q + Sbjct: 1437 NLLSNAIKFTNS-GTVSLQMSRGVADRTFFKVSDTGVGIAAHSMEKIFHPFTQADTSTTR 1495 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + + GG + S++ G LP R + + E + Sbjct: 1496 KFGGTGLGLTICKHLCEAMGGDIQVESQVGVGSTFSVNLPLPRAESSMDEPS 1547 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +ET AE + AKS F+A+MSHE+RTP+NA+LGF+++ + P Sbjct: 379 ITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALRGDLSP--- 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ + L+ +IN+ILD S+++ GR EL L ++ + +A Sbjct: 436 -KVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAA 494 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQ 401 + +++ + + V + D + Q+ +NL+ NAVKFT G + V G Sbjct: 495 DHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFT-KNGFITVRAQPELLEGHRV 553 Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+ D+G GI ++P + F Q + G GLGL I + +++ G Sbjct: 554 RLTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAE 613 Query: 460 SKLREGVEVIAIL 472 S+ +G + + Sbjct: 614 SEPGKGSQFHFEI 626 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 MTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL D++ ++ L+AQ Sbjct: 639 ATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT G + ++ Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQ-GEIVISARVRQINEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 MLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 699 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 23/384 (5%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 + G ++ + + + A +++ L+ + Sbjct: 196 RFPIPDFLGGTPLAVIVEIPHDGYQSMLYAVLLVALIMVVLTSITVFVINCR-------- 247 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 Q ++ + + A L + + L+ + + ++ + Sbjct: 248 -------IQPMLFGRLRLVHNAVRSIARGGALDQRVPVLGRDEIGALA--EDFNAMVDSI 298 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A++ + R +AE+ + KS+FLA++SHE+RTP+ AILG++E++ ++ + + Sbjct: 299 HHAQTQLAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATDK---R 355 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I +G LL LIN++LDLSRIEAG+ + S ++ E I LQLRA EK+I Sbjct: 356 RYLTIIQHNGDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDI 415 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIK 406 ++ L +V D +RQ+++NL+ NAVKFT GRVHV V W + +S++ Sbjct: 416 DLRIHYLTDLPPTVSGDAFRLRQILVNLIGNAVKFTER-GRVHVGVNWDEEASRLNVSVE 474 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+EGE+ + F Q + G GLGL IA+ + G + S L +G Sbjct: 475 DTGIGISEGELSRIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGS 534 Query: 467 EVIAILPNTRVLNFIPEDNHESTQ 490 + +P R + + + + Sbjct: 535 CFVLDIPLVRACDTVSQTAGDRPD 558 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 594 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 650 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 651 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 709 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 710 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 768 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 769 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 828 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 829 SEEGKGSTFEFS 840 >gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1121 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 18/314 (5%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 ++ L L+ +L E L + + + E Sbjct: 413 RMIMGIPLKSGSQVTGVLGLACHRETDQTFSDEEKALLERFGELASLALDNAKLYAEASE 472 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R AE N AKS FLA+MSHE+RTP+N ++G + ++ + NE +E+ I S Sbjct: 473 ARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDTPL----NEEQREFCETIRGS 528 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ LL +IN+ILD S+IEAG+ EL L + + + ++ AQ+K +E+ +D Sbjct: 529 GEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVDKQ 588 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----------YISIK 406 + ++ D +RQ++LNLL+NAVKFT G + +TV G S+ Sbjct: 589 VPATIAGDVTRLRQILLNLLNNAVKFTEQ-GEISLTVRGEDGPDAAALPPGSMLLRFSVA 647 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LRE 464 D+G GI + + SF Q + G GLGL I++ + GG+ + SK + Sbjct: 648 DSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVESKGVPGK 707 Query: 465 GVEVIAILPNTRVL 478 G ++ V Sbjct: 708 GSTFHLLIRTEPVA 721 >gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] Length = 470 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 101/263 (38%), Positives = 157/263 (59%), Gaps = 1/263 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + ++++ A E ++ AE+EN++KS+FLA++SHELRTPLN+I+GFSE+++ E+ Sbjct: 205 YKNAKMLSKQYNANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAES 264 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 MG + N YKEYI DIH +G HLL+LIN+ILD S+ EA + + L ++ C M Sbjct: 265 MGAIENVHYKEYINDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNM 324 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397 + RA+E + + Q + + + AD K M+QVI+NLLSN++KFT G V + V + Sbjct: 325 ILPRAEEAKVRLEQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLE 384 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + DNG GIA+ ++ V++ FGQ +G GLGLP+++ ++ G F Sbjct: 385 NSMIVIEVIDNGIGIAQQDLYKVMSVFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFK 444 Query: 458 IRSKLREGVEVIAILPNTRVLNF 480 I+S+ G V + P T L Sbjct: 445 IKSEPNLGTIVTLMFPYTNTLEE 467 >gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum] Length = 2062 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE + AKS F+A+MSHE+RTP+N I+G +++ + +EY+ + S Sbjct: 1336 AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTA----EQREYLSMVQSS 1391 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL +IN+ILD S+IEAGR EL ++ SL + + + L RA +K IE+ I Sbjct: 1392 AGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASD 1451 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY--ISIKDNGPG 411 + S+ D +RQ++ NL+ NA+KFT+ G V + V S+ D G G Sbjct: 1452 VPDSLIGDPGRLRQIVNNLVGNAIKFTSQ-GEVDLVVKVEKSLSCGEVVLKFSVIDTGIG 1510 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ + +F Q +I G GLGL I+ ++ G+ + SK +G Sbjct: 1511 IPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFT 1570 Query: 472 --LPNTR 476 P + Sbjct: 1571 AQFPTSP 1577 >gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 789 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 9/285 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ ++++ + +K L + + + + N AKS FLA+MSHELR Sbjct: 371 HLAVAIYQAQLYA-QLHQQKSSLEQRVIERTQELRDALQATQAANHAKSEFLAAMSHELR 429 Query: 262 TPLNAILGFSEVIELETMGP-----LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 TPL ++G S + ++G ++ E + Y+ I +G+HLL LIN+ILD S++EA Sbjct: 430 TPLTCVIGLSATLLRWSLGEGGSKTVSIEKQRRYLQTIQENGEHLLALINDILDFSQLEA 489 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILN 374 G+ L+ + SL + ++ + L+ +A +E+ AD + +RQ++ N Sbjct: 490 GKAVLNINEFSLRYLAQQTLRSLKEKASSGQVELILDWQVPTPKDRFQADPRRLRQILFN 549 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LL NA+KFT GG+V + GW I+D G GI + +IP + F Q + Sbjct: 550 LLGNAIKFTPAGGQVTLR-GWREQNRAVFQIEDTGIGIPQEQIPLMFQKFQQLEKTYQRT 608 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 +G GLGL + Q ++ HGG + S + +G +P V+ Sbjct: 609 YEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTVRVPIQSVVP 653 >gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 508 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 160/342 (46%), Gaps = 4/342 (1%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + A + + A + + + A++ + L SL + + Sbjct: 171 LVNRAEADMLAQVDAGAAGYARSRALV--LSIAAGSVVLALLLGYALSWSLVEPVREMDA 228 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 I F+ + I + + E L A+L + + E N KS FLA+MSH Sbjct: 229 RLAEIAAGQFERRIDIPN-RDELGALAADLNRMSAELGRLVREVEAANRNKSAFLANMSH 287 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAI+GFSEV+ + G + N EY+ DIH SG HLL LIN++LDLS+IEAGR Sbjct: 288 ELRTPLNAIIGFSEVLIEQMFGEV-NAKQLEYLRDIHASGHHLLTLINDVLDLSKIEAGR 346 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 EL S L +++ + +++ RA + + + L AD + ++QV++NLLSN Sbjct: 347 MELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPRKIKQVVVNLLSN 406 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT GG V + I++ D G GIA E V F Q +G Sbjct: 407 AVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQAGTDPLRKSEGT 466 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GLGL +A+ + HGG + S G LP+ + Sbjct: 467 GLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLPDRTLEPT 508 >gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment'] Length = 1049 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 161/343 (46%), Gaps = 23/343 (6%) Query: 152 SALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 S+ LP V V +L+ + + + + + + L + Sbjct: 428 GVQSSLSLPLLVGGEVLGVFFLDSLTAGTYAAHDIERLLPLADQVAIVVKHSRLWGSLQR 487 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ E+ A ++ AKS+ AE + AK FLA MSHE+RTPLNAI+G Sbjct: 488 HTEELRREVEERKRAEAAMQQAKSV-------AEAASRAKGEFLAKMSHEIRTPLNAIIG 540 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +E+ + +E++ + S + LL +IN+ILDLSRIEAG+ + E+A L Sbjct: 541 MTELTLDTALTT----EQREFLQVVQSSSEALLTVINDILDLSRIEAGQMAIEETAFHLR 596 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++V +L +RAQ+K +E+ +DP+L V D +RQV++NL+ NA+KFT G Sbjct: 597 EVVEGVAEVLSIRAQKKGLELTCYVDPALPSRVLGDPMRLRQVLVNLVGNAIKFTER-GE 655 Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V T G +IS+ D G GI + + F Q G GLGL Sbjct: 656 VTIQVERTQVEAPGRIGVHISVADTGIGIPTHQQARIFDPFAQADATTARRFGGSGLGLS 715 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I++++M GG+ + S++ +G L V PE Sbjct: 716 ISKALMELMGGRIWVESEVGKGSTFHCDL---VVTVAEPEAET 755 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 152/320 (47%), Gaps = 16/320 (5%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAE 227 V + L A S + +++ + + + + E + Sbjct: 626 VTIGLIALANASEGFTETDRTTAEDLSVALAEALQRKKADQALHAFNAELEERVRARTTD 685 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 LE A + +E + AE N KS FLA+MSHE+RTP+NAILG +I+ + + Sbjct: 686 LEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTHL----SAKQ 741 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 Y+ +H S + LLN+IN+ILD S+IE+G+ +L ++ + +R +L L AQ+K Sbjct: 742 ANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKG 801 Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQY 402 I + +D + D +RQV++NL+ NA+KFT G + VT T + Sbjct: 802 IVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFT-EHGHIQVTQRLTQWVEAQAECI 860 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++D GPGIA G+ + +F Q + G GLGL I++ ++ GG+ ++S Sbjct: 861 FEVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTP 920 Query: 463 REGVEVIAILPNTRVLNFIP 482 +G + VL+ P Sbjct: 921 GQGSRFTFRV----VLDVPP 936 >gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 676 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 112/377 (29%), Positives = 182/377 (48%), Gaps = 9/377 (2%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 L G+ + V + + +SA ++ L + ++ + ++F++ Sbjct: 296 RLSLQADRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMAL 355 Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + + + + L Sbjct: 356 LAANDTPPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRSSSMPGGGLILSFTD- 414 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + + E + AE N AK+ FLA++SHELRTPLNAI+GFSE+++ E GPL Sbjct: 415 --VTDRKRVEQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPL 472 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +Y+ Y+ DIH SG HLL LIN+ILD+S+ EAG +L E+A+ + D+VR I +L R Sbjct: 473 EPASYRTYVDDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLLTRR 532 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ I + + + P+L + ADE+ +RQVILNL SNAVKFT GG V + T Sbjct: 533 AENAGITLSEDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAKVTEAGFI- 591 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I++ D G G+ E+ V+ F Q + +G GLGLP+A++++ HGG + S+ Sbjct: 592 ITVADTGIGMTPEELLRVMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLDSQP 651 Query: 463 REGVEVIAILPNTRVLN 479 G P +R+++ Sbjct: 652 GRGTVATVTFPPSRIID 668 >gi|83312294|ref|YP_422558.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947135|dbj|BAE51999.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 601 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 190/468 (40%), Gaps = 23/468 (4%) Query: 31 MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI---FPMWSLITLAVYAANL 87 D + V L R P L +A + W+ +AV A L Sbjct: 6 ASIDTRVRAEQVRVLARNLPFTALTGTAIALLAALGAAPVAGEMVWWWAGAFVAVAALRL 65 Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147 ++ + + W ++ + GL W + L + + Sbjct: 66 AMLRFYWTVADRDRRPDFWGPYMAFNLLLSGLMWLIFGLAAFDAHDAGHALFIAVILTGL 125 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + A + P + P + +S + LA M A L T Sbjct: 126 TAASLASLSAYFPGQM-AFALPTIAGFVIPVALSGERVMTILAVMAAVFLVVVTLSCRAA 184 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + V+ + + E + LI +L A + ++ N AKS FLA MSHELRTP+ +I Sbjct: 185 ERVLVQSIRLRFENERLIGDLRRAGAEAE-------AANRAKSDFLAVMSHELRTPIASI 237 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LGF ++ + + + R+G+HLL ++++ILD+SRIEAG+Y L + S Sbjct: 238 LGFVQL----AGMAPTLARARAILPKVGRAGRHLLAIVDDILDISRIEAGKYALDLAPFS 293 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 L +++ + + A+EK +E+ + ++ D + Q+++NL+ NAVKFT+ Sbjct: 294 LDEMLGHVEDLTRPLAEEKGVELSLQHSDDAPALLVGDALRLGQILINLVGNAVKFTSR- 352 Query: 387 GRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G VHVTV + + D+G GI + + F QG + G GLGL Sbjct: 353 GAVHVTVRTMPIDEISLLLECEVADSGIGIPADRLEAIFEPFTQGDGSTTRRYGGTGLGL 412 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + ++++ GG+ + S+ G + P+ E+T+ Sbjct: 413 SVCRTLVEMMGGEITVESQPGRGSVFRFS--ALLGVAGAPQAQTEATE 458 >gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 778 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 149/338 (44%), Gaps = 22/338 (6%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 I+ L + + L L + +A A+ + + + + + Sbjct: 174 IWLQVWLALVVFAGGLGLAFLLASRLHRLISEPIARVAVAMERITLDEDYGVRLGSIGTD 233 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +T D ++ +E + E R AE N AKS FLA+MSH Sbjct: 234 ELATLTRAF--------------DAMLERIEQRDAELREARDAAERANRAKSHFLANMSH 279 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N I+G +E+++ + N ++ I S L+ +IN+ILD+SRIEAGR Sbjct: 280 EIRTPMNGIIGMTELLQETDL----NAAQRDCTRVIQDSAAALMRIINDILDMSRIEAGR 335 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL + + + L+ AQ K +E ++DP L + D +RQ++ NL+S Sbjct: 336 LELERLDFDPRESIERTLEPLREIAQRKGLEFAIELDPELPARLRGDPGRLRQILTNLVS 395 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V + + I+++D G G++ E + F Q ++ + Sbjct: 396 NAIKFTEQGRVSVTLDCLERTDDWVRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRR 455 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG + SK G L Sbjct: 456 YGGTGLGLAISRQLVELMGGGIDVESKPGLGSVFRVEL 493 >gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 467 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 5/330 (1%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +++ A +L V F + +A S + + + L +L AL + + Sbjct: 132 VIAMDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYDLEKLLNQALETGRCMQKQI 191 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLN 265 + Q L + R E +S F+A++SHELRTPL Sbjct: 192 QILAPEPRVFQVHVIPLQNSGAERGGVVALLRDITERKILQEMRSEFVANVSHELRTPLT 251 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I GF+E + + +T + ++ I+ + L LI+E+L+LSR+E+ ++ Sbjct: 252 SIRGFAETLLDGAL--EEPDTARRFLEIINSETERLSRLIDELLNLSRLESHKWVPKRQP 309 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +++ ++++ + +LQ RA EKN+ I + L V D + QV+LNL+ NAV +T Sbjct: 310 VNMGELIKRAVAILQPRAVEKNLAIKINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQA 369 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V ++ T + + +KDNG GI + V F + A + G GLGL I Sbjct: 370 GGEVSISAAATQDEMK-VDVKDNGIGIPPESLSRVFERFYRVDKARSREQGGTGLGLSIV 428 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + I+ H G + SK+ G ++P Sbjct: 429 KHIIDAHRGSVQVESKVGIGSTFSFVIPLE 458 >gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica] Length = 776 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 98/362 (27%), Positives = 158/362 (43%), Gaps = 27/362 (7%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + L+I L ++L + L V P+ + T + L+ Sbjct: 165 LRAAHLQRYKDIAIFILLLVICLGGASLFAYYL---VRKITEPISEIVRTVDRIRQGQLN 221 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLS 235 ++G + + + S + E I + E+ Sbjct: 222 SRVSG---KYFGELDTLKNGINAMAKSLSSYKEEMQHDIDQATSDLRETMEQFEIQNVEL 278 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 +KRA+E K+ FLA+MSHELRTPLN ++GF+ +T+ EY+ I Sbjct: 279 AIAKKRAQEAARIKTEFLANMSHELRTPLNGVIGFT----RQTLKTSLTIQQTEYLHIIE 334 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RS HLLN+IN+ILD SR+EA + L L + + E I++L A+ KNI++ ID Sbjct: 335 RSANHLLNIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHSID 394 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGP 410 P + + V D ++Q++ NL+ NA+KFT G V + + + I ++ D G Sbjct: 395 PQIPNLVIGDPMRLQQILTNLIGNAIKFTEQ-GSVKIDINLVQQQHHKINLAMTVSDTGI 453 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI+ + P + +F Q +I G GLGL I Q ++ GG S+ +G Sbjct: 454 GISPEQQPHLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTSEQGKGSVFHF 513 Query: 471 IL 472 L Sbjct: 514 DL 515 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 162/401 (40%), Gaps = 17/401 (4%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 ++++ + + + IG+ W + ++ + L+ S Sbjct: 747 ARTAEVREAHARLQITQFAMDSVGIGIQW-------IDPDSGRFVYANRHTAELLGYSEQ 799 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + + P A + S + S Y++ Sbjct: 800 EMLTLTVSDIDPAFPLPAFHATMARLRQSRYTQFQSQIETRGGVPIPVEITLYYMEGDAD 859 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 A D I+ + + + ++ AE+ NLAK+ F+A+MSHE+RTP+NAILG Sbjct: 860 APARVIAFLTD-ISRRKETEQTLVQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVY 918 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + + + + I RS +HLLNLIN+ILDLS+ + G+ +L+ S L + Sbjct: 919 LLSQGRL----SAQQQHQLDTIDRSARHLLNLINDILDLSKADVGKLQLALSDFDLARLP 974 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + ++ +A+ K +++ + D V D + Q +LNLLSNAVKFT GR+ ++ Sbjct: 975 ADVMGLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLSNAVKFTER-GRIAIS 1033 Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + ++D G GI P + +F Q + G GLGL I + + Sbjct: 1034 LSIDGEDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTRRYGGTGLGLAITKRL 1093 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GG + S +G R + + T Sbjct: 1094 AELMGGAVGVESAPGQGSLFWFTARVARSGQAAADQYPQQT 1134 >gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 90/272 (33%), Positives = 139/272 (51%), Gaps = 23/272 (8%) Query: 225 IAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 IAE + L++E +K A+ N AKS FLA+MSHELRTPLNAI+G+S++++ + Sbjct: 852 IAEDITQRKLAEEFQKVAQSAVAANQAKSAFLANMSHELRTPLNAIIGYSDLLKEDAED- 910 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L E + + I R+G+HLL LI++ILD+S+IEAGR EL + +D++ E I ++ Sbjct: 911 LGAEEFISDLDRIQRAGKHLLGLISDILDISKIEAGRMELYLENFNPVDLIEEVIATVEP 970 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 + + ++ +L ++AD RQ++LNLLSNA KFT G + +T+ G Sbjct: 971 LVMKNSNKLEVSFGSNLDEMYADPTKTRQILLNLLSNAAKFT-KDGTITITLTKDEKVGN 1029 Query: 401 -----------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + D G G++ ++ + F QG + G GLGL Sbjct: 1030 EEIFNGDIESEGDYLCFLLFQVADTGIGMSATQLEHLFQPFMQGDTSTTRQYGGTGLGLA 1089 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I++ GG + SKL G LP Sbjct: 1090 ISRHFCLMMGGDIEVESKLGSGSVFTVRLPVK 1121 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 594 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 650 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 651 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 709 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 710 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 768 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 769 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 828 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 829 SEEGKGSTFEFS 840 >gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1514 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 91/263 (34%), Positives = 155/263 (58%), Gaps = 3/263 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L + ++ L +E+ ++ +++A+ +L KS FLA+MSHELRTP+N+I+GF+ Sbjct: 1252 SELELEIYRNKLEDLVELRTLELEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTG 1311 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + GPLN+E K+ + + SG+ LL+LIN+ILD+S+IEAG+ ++ SA ++I+ Sbjct: 1312 ILLKQLAGPLNDE-QKKQLTMVKSSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEIL 1370 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + I L +A++K ++I +I + +DE+ + Q++LNL+SNA+KF+ G + + Sbjct: 1371 EKTIAFLTPQAEKKGLKIKTEISNFDIVIESDERRVEQILLNLISNAIKFSNK-GIISIK 1429 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 V G I D G GI I T+ F Q + +G GLGL I++S++ Sbjct: 1430 VKL-EGNFVITKIIDQGIGIEAKHIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKL 1488 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG+ L++S+L EG LP Sbjct: 1489 GGEILVKSQLGEGSTFTFKLPLK 1511 >gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 605 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 109/378 (28%), Positives = 187/378 (49%), Gaps = 12/378 (3%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----------- 171 + ++ I +A L+ + +S L L V ++ P Sbjct: 209 MCDVISRHRRNGAVQFISPAAESLLGVPVSELQGHGLFDRVHVADRPAYLTALAAAALGK 268 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 A S + + + + + + + + + + + Sbjct: 269 GAQSVEFRLRRDAASDAEFEGHPSGNFIWVEMRCQPLEPSSPAEPEVVAVMRDVTDRKQQ 328 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + D R AE + AK+RFLA+MSHELRTPLNAI+GFS++I E PL+ KEY Sbjct: 329 EHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMIVQEATLPLDATRRKEYA 388 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ SGQHLL+++N ILD+S++E+G +E+ + +++ +L L+A++ +IE+ Sbjct: 389 QLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKARDNDIELV 448 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 ++ +L + D + RQ++LNL+SNA+KFT GGRV ++ G + + DNG G Sbjct: 449 TRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISA-RVEGARMVLRVVDNGVG 507 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA+ ++ + F Q + +G GLGL I +S++ HGG+ ++SK+ EG V + Sbjct: 508 IAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEEGTTVTVM 567 Query: 472 LPNTRVLNFIPEDNHEST 489 LP T + P N+ +T Sbjct: 568 LPLTLMPAAEPPSNNIAT 585 >gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 807 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 3/254 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E ++ ++L E ++ AE N KS FLA+MSHELRTPLN+I+GFS+++ + G L Sbjct: 556 RDITEKKITENLLHE-KQMAEFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGEL 614 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ I +I SG+HLLNLIN ILDLS+IEA + EL L + +L Sbjct: 615 -NQKQLRAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPI 673 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A +KNIEI +D S+S + ADE +++ NL+ NA+KF+ V + G Sbjct: 674 ADKKNIEIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKIGT-RKKGELVE 732 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I+++D G GI + + F Q + QG GLGL + + I+ HGG +S+ Sbjct: 733 ITVEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQ 792 Query: 463 REGVEVIAILPNTR 476 +G +P T+ Sbjct: 793 GKGSTFAFAIPITK 806 >gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1099 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 8/263 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + E ++ AE N KS FLA+MSHE+RTP+N ++G + ++ + Sbjct: 437 RDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKL--- 493 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + + I SG+ LL +IN+ILD S++EAG+ +L + L+ +V + +L R Sbjct: 494 -TEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPR 552 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR- 399 A K IEI IDP L V +D +RQV++NL NAVKFT GG + VT+ G Sbjct: 553 AHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQ 612 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++D G GI + + F Q + G GLGL I + + GG+ + Sbjct: 613 PMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGL 672 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S+ +G +P + Sbjct: 673 ESQPGKGSRFWMSVPMELLAPQS 695 >gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1202 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 10/282 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + K A I++ + + + AE N +KS FLA+MS Sbjct: 491 VWILSSGRVIERDEEKRALRMAGIHKDISDRKRVEDELKKAMLDAESANRSKSEFLANMS 550 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N ++G E++ + P + ++ S + LL +IN+ILD S+IEAG Sbjct: 551 HEIRTPMNGVVGMMELLSNTELTP----EQQSHMRTARNSAESLLTIINDILDFSKIEAG 606 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + EL E A L ++V + +L R + +E+ L V D +RQV++NL+ Sbjct: 607 KLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADLPMQVAGDPTRLRQVLVNLV 666 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G V +TV + ++D G GI E P + F Q + Sbjct: 667 GNAVKFTPEGEVEVRMTVERQDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTR 726 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILP 473 G GLGL I++ ++ GG+ S + +G P Sbjct: 727 RFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFP 768 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 175/452 (38%), Gaps = 17/452 (3%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV- 103 L + I+ + L+ + +W + + Y+ G ++ Sbjct: 210 LLVMGTIVMIIADLILAYQSLNNIYDSGGIWDVGWIMAYSMIGLAGILQASTSPSDAPPF 269 Query: 104 ------YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157 + + + + + P L+ + + Sbjct: 270 QKVPSEEPAYARTVASSASPYALDSGMVRFPGAHYIPYIFVAGAYIILIWSFDRPLAIST 329 Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 ++V A+ L + ++ + + + Sbjct: 330 PHLSYSVGGIIGLIVIRQIVALKENERLFQTSKRAEEEVRRLNQHLESRVMDRTAMLKAA 389 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + ++ I E + + +++ AE AKS FLA+MSHE+RTPLNA++G + ++ Sbjct: 390 NRKLEEDILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGIL--- 446 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 +G N ++++ I SG LL +IN+ILD S+I++G+ EL + + + + Sbjct: 447 -LGTDLNREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVD 505 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ AQEK + + I+ S+ + +D +RQ+++N+L NAVKFT+ G V + V Sbjct: 506 LMAPVAQEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSS-GEVRILVSGR 564 Query: 397 S----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + ++ D G GI ++ + SF Q G GLGL I++ ++ Sbjct: 565 DLGGREHEIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELM 624 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G S+ +G + L+ P + Sbjct: 625 DGSIWAESEEGKGSTFHFTIKAMEALSPPPGE 656 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 752 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 16/279 (5%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E+ + E ++ AE + AKS FLA+MSHELRTPLN I+G SE++ + Sbjct: 341 EEIHAYQERLKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG---- 396 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 EY I +G++LL LIN+ILD+S++E+G+ ++ L ++ L + Sbjct: 397 ELVEYARTIQTAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIH 456 Query: 346 KNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K++ ++ + +V DE + QV+ NL+ NA+KFT+ G V + V Sbjct: 457 KSLRFVLEVASEVPAVVVSDEARLSQVLFNLVGNAIKFTSR-GEVVLRVWMEEAEEGRAK 515 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++D G GI E+P V F Q + QG GLGL IA+ ++ GG+ + S Sbjct: 516 IVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVES 575 Query: 461 KLREGVEVIAILPN------TRVLNFIPEDNHESTQYKC 493 + +G +P RVL F+ + E +++ Sbjct: 576 EEGKGSCFTVRIPFQVPVSSARVLPFVRDGLEEKVEWRG 614 >gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1765 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + A+ N AKS FLA+MSHE+RTP+NAI+G S++ + + Sbjct: 1013 ITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----D 1068 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI I R+ + LL +IN+ILD S+IEAG+ ++ L ++ + M ++A Sbjct: 1069 AKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKAS 1128 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 +K +E+ + P++ + D + QV++NL++NA+KFT G V +++ Sbjct: 1129 DKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQ-GEVLLSISQLERVEDDI 1187 Query: 401 Q-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++DNG G+ E + + SF Q + G GLGL I++ ++ GG+ + Sbjct: 1188 VLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVE 1247 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 1248 SQFGNGSTFFFS 1259 >gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 710 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 110/446 (24%), Positives = 188/446 (42%), Gaps = 21/446 (4%) Query: 36 EIITLHVESLFRVSPILPLFVLLV-----ANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90 E S+ L L+ A + + W +T A+L + Sbjct: 131 EKAIAFWLSMRACGAFGLLVAALLPWRRFATPLGHWLAMAVVLAWVAMTYWGALAHLEIL 190 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + S + V +LV L + SA+ ++ L+ Sbjct: 191 PRTFISGQGLTPFKVVAEAILVLVYL------LAAFLFWHAANLPNARWLASASWVMGLA 244 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + + P+ ++ + + ++ + ++T + + + Sbjct: 245 GAYFCLYDDPFDIYNQVGHLYIVIAYALLYQG--------LFISTIRDPYVRLQQAQDEL 296 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 +++ E D + LE + ++ + A+ N AKS FL+SMSHELRTPLNA++GF Sbjct: 297 ENRVVERTRELHDALISLERQQHDLEQAKLGADRANQAKSEFLSSMSHELRTPLNAVIGF 356 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ E GPL NE + I R GQHLL LINE+LDL+RIE G+ LS I + Sbjct: 357 TQLLRTERPGPL-NEKQAGQLDHILRGGQHLLELINEVLDLARIETGKLSLSVEVIDPVV 415 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 ++ EC+ + A+E+ +EI + + + D +Q++LNL+SNA+K+ GRV Sbjct: 416 VMNECLAFGRAYARERGVEIGEWQGGPVLPISVDYTRFKQILLNLISNAIKYNRADGRVT 475 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +T SI D GPGIA + + F + A +G G+GL I + ++ Sbjct: 476 LTAQPWGTGMMRFSIADTGPGIARDKQAHLFEPFNRL-GAESRDVEGTGIGLTITKRLVQ 534 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTR 476 G S+ +G P R Sbjct: 535 AMNGLIGFHSQEGQGSVFWIDFPIAR 560 >gi|313113960|ref|ZP_07799516.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623723|gb|EFQ07122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 780 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 157/338 (46%), Gaps = 12/338 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L A +++ + I+ + + S+ + L L Sbjct: 288 AFLVPAKYVAVNTQKLVSIVMIIIIVIAMVFSVITVFVGWFLLRQKQQQELQAEKEANLR 347 Query: 217 CQAEKDDLI---AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + L EL A+ ++ E + AE + AK+ FLA+MSH++RTP+NAI+G + + Sbjct: 348 LEQYNIHLTQVNDELRQAQDIAAEALQSAERASKAKTDFLANMSHDIRTPMNAIIGITTL 407 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ E E E++G + SGQ LL +IN+ILD+SRIE+G+ L+ ++L + Sbjct: 408 MKNEL---HQPEKLAEHLGKLENSGQLLLGIINDILDMSRIESGKTTLNVEKMNLPQQIS 464 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + +++ +A ++ +V AD + +V++N+LSNAVK+T GG + V Sbjct: 465 QLDSIIRQQAGQRRQTFTVNTHLQHENVLADPNRLNRVLMNILSNAVKYTPTGGHIRFEV 524 Query: 394 GWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 Y ++D+G G+++ T+ F + + + QG GLG+ I ++I+ Sbjct: 525 DELPRNEHYARYRFVVQDDGIGMSKAYQKTLFDPFTREERSGTNKVQGTGLGMAITKNIV 584 Query: 450 ANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPEDN 485 GG + S +G +L P + +PE Sbjct: 585 DLMGGSINVESTTGKGTRFEVVLEFPVDAEADTVPEAQ 622 >gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366] gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1196 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 7/373 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R + V G+ + ++TP L S + I ++I N Sbjct: 385 RNVVAVPVFRDGVVVGAMEFGALQSYTPLQLDFLNSISTNIGIAIHVSQNRKKLQEFLEE 444 Query: 167 FFPVVVALSTQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + A + T+ L +SN ++ + ++ Sbjct: 445 TQAQAEELQAQHRELEGLNAELEAQTQRIQTSEEELRVQQEELLQSNQELEERTSLLEEK 504 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ ++ E+ KS FLA+MSHELRTPLN+IL S+++ + Sbjct: 505 NQLIQERNLDIQHKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSEN---KELD 561 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y EY I SGQ LL LI+EILDLS+IEAG+ +L + +++ ++ + + A+ Sbjct: 562 KEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAK 621 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-I 403 KN+++ ++ +S + D + Q++ NLLSNA+KFT+ G+V +TV Sbjct: 622 NKNLDLVIDVESDISGINTDRMRLEQILKNLLSNAIKFTST-GKVALTVKQDDAGKAILF 680 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + +F Q + + G GLGL I++ + GG+ + SK Sbjct: 681 KVTDTGIGIPLDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTSKEN 740 Query: 464 EGVEVIAILPNTR 476 G E LP R Sbjct: 741 VGSEFTLALPVDR 753 >gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 576 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S FLA++SHELRTPL +I GF E + + K ++ I L L Sbjct: 348 LEKLRSEFLANVSHELRTPLTSIKGFVETLLEGAY--KDPGLAKRFLSIIDAEAGRLYRL 405 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN ++DLS+IE + +L +S +++ E II+ + R +EK ++ I L V AD Sbjct: 406 INNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKAD 465 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +RQV +NLL NA+K+T GGRV + G + D G GI E ++P V F Sbjct: 466 PDWLRQVFINLLDNAIKYTQSGGRVWIEAEP-KGDVVEFRVCDTGIGIPEEDLPRVFERF 524 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I + I+ GG + S++ +G + I L ++ Sbjct: 525 YRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVNQGSKFIFTLKRSK 576 >gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] Length = 1328 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + +S E + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 LTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL ++ ++ +AQ Sbjct: 639 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 EK IE IDP + + D + QV++NL NAVKFT G + V+V Sbjct: 699 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 757 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KD G GI + +I + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 817 Query: 460 SKLREGVEVIAIL 472 S + G + Sbjct: 818 SAVGMGSTFTFTI 830 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ P Sbjct: 698 ITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI++ + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1761 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + A+ N AKS FLA+MSHE+RTP+NAI+G S++ + N Sbjct: 1013 ITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----N 1068 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I R+ + LL +IN+ILD S+IEAG+ ++ L ++ + M ++A Sbjct: 1069 RKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKAT 1128 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399 +K +E+ + P++ + D + QV++NL+SNA+KFT G V +++ Sbjct: 1129 DKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQ-GEVLLSISQLERIEDDI 1187 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++DNG G+ E + + SF Q + G GLGL I++ ++ GG+ + Sbjct: 1188 VLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVE 1247 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 1248 SQFGNGSSFYFS 1259 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 292 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3] gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 937 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 165/354 (46%), Gaps = 21/354 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD + G L Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 240 GELDLLKRGINAMAGSLSDYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++YI I +S LL +IN Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYINTIEKSATTLLGIIN 355 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +L +++ + I +L A+EK+IE+ I+ + + D Sbjct: 356 DILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVDIESDVPEDLSGDA 415 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 + Q++ NL+ NA+KFT G VH+ + T + + + D G GI + + + Sbjct: 416 MRISQIMTNLVGNAIKFTDQ-GSVHLKLQLTESNNEQVHLRCEVTDTGIGIDDSQKEVLF 474 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +FGQ +I G GLGL I + ++ GGQ SKL +G LP Sbjct: 475 QAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGSTFWFTLPLQ 528 >gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1302 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 10/260 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + R AE AKS FLA+MSHELRTP+N ++ + ++ + Sbjct: 897 RDITLRKKVHQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISMANILLDTDL--- 953 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +ET ++Y I SG+ LL L+N+ILDLS+ EAG+ + + L +++ + + +L Sbjct: 954 -DETQRDYTSTIRDSGESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTT 1012 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 AQ+KNI++ + ++ D ++QVILNL NA+KFT G V + V Sbjct: 1013 AQQKNIQLETNVTDDTPTLLIGDAGRIKQVILNLTGNAIKFT-EDGHVKINVSKLEDTNK 1071 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I I+D G GI+E + F Q + G GLGL I++ I+ G+ Sbjct: 1072 HVNIRIEIEDTGVGISETAASRLFRPFEQADGSHSRRFGGTGLGLAISKEIVELMDGEIG 1131 Query: 458 IRSKLREGVEVIAILPNTRV 477 + S L +G L +V Sbjct: 1132 VDSVLGKGSTFWFTLKLEKV 1151 >gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 1068 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 17/271 (6%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A + +K AEE + AKS FLA+MSHE+RTPLN I+GF+E+++ + +E +E Sbjct: 369 KAIENIAKEKKNAEEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNSDL----DEEKRE 424 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I +S ++LL +IN ILDLS++E+ + E+ ES S ID + + +A EKNI+ Sbjct: 425 FVDVIEKSSENLLAIINNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQ 484 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403 + +DPSL + D +++V++NL+SNAVKFT G++ V + Sbjct: 485 LSLYMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLF 544 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D+G GI + +I + +F Q I G GLGL I+ +A GG+ + S+ Sbjct: 545 SVRDSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDVESEEG 604 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 +G IL +PE + T YK + Sbjct: 605 QGSRFFFIL-------DLPESSASGTDYKNH 628 >gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD 2210633] gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] Length = 932 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G V V + +G + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 171/370 (46%), Gaps = 15/370 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 L LV + + + + ++++ ++ +A+ N L + + A S Sbjct: 709 ALPDLVLRLRPDGQVVDVVAAESMVLPMAPTAMINSTLEQLFPAAIATQYRQALSAAFAS 768 Query: 182 MHVLDISLAGMLATALSFF-------------TYITYHLFKSNVKILSCQAEKDDLIAEL 228 + ++ ++ FF I + L+ Q E+D L + Sbjct: 769 GELQTLAYQLIVEAKEYFFEARIKAALPAEEAIAIVRDVTAWRNAELALQVERDLLAQRV 828 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + K FLA+MSHELRTPLN+IL SE + E GPL + + Sbjct: 829 AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPL-RDQQQ 887 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I I SG+HLL LIN++LDL++IEA R EL + ++ D+ + +++ +A +K I Sbjct: 888 KAIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQI 947 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKD 407 + ++D + AD + ++Q+++NLLSNAVKFT GG V + V T+ ++ D Sbjct: 948 HLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSD 1007 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GIAE ++ + F Q + +G GLGL + + ++ HGG+ + S G Sbjct: 1008 TGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSR 1067 Query: 468 VIAILPNTRV 477 LP V Sbjct: 1068 FTVTLPYQPV 1077 >gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1236 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 10/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL KS FLA+MSH Sbjct: 672 WMLSRGRVVEFTQDAQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ ++ E K+Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAGRTSL----TEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLS 377 EL + A L ++ + + LRAQEK IE+ + + D + QV++NLLS Sbjct: 788 LELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI+ + + +F Q + Sbjct: 848 NAVKFT-QNGEIELGCEDVGERDHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ +++ GG + S+ G Sbjct: 907 KYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFT 944 >gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 607 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 3/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++ + + F+A++SHELRTP+ +I ++E + M + ET K ++ I + Sbjct: 377 QKLDSMRREFVANVSHELRTPITSIKSYTETLLEGAM--EDQETSKRFLCVIDSEADRMT 434 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR++ + +SL IV+ + LQ+ AQ K+ ++ + + ++ Sbjct: 435 RLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIPAIS 494 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD+ M QVI+NL+SN++K+T+ G + V VG Y+ + D G GI +P V Sbjct: 495 ADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYND-IYVKVTDTGIGIPSESLPRVFE 553 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ I+ HGG I S++ +G EV LP Sbjct: 554 RFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLPRE 606 >gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 927 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 2/243 (0%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +KS FLA+MSHELRTPLNAI+G+SE++E + ++ + + I S +HLL LI Sbjct: 422 NKSKSEFLANMSHELRTPLNAIIGYSEMLEEDAEDMGQDDFVPD-LQKISGSAKHLLELI 480 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N +LDLS++EAGR EL + + +V+ LQ A +++ I ++ +++AD+ Sbjct: 481 NAVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQ 540 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +RQ + NLLSNA KFT G V +T+ +G SIKD G G+ ++ V +F Sbjct: 541 TKVRQSLYNLLSNACKFT-ESGEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFT 599 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q + G GLGL I + + GG + S+ G E LP Sbjct: 600 QADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPRQVESESKASAP 659 Query: 486 HES 488 +S Sbjct: 660 AQS 662 >gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 828 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L+ +E + A+E+N AKS FLA+MSHE+RTP+N ++G + ++ + +E Sbjct: 293 EHLKELNVQLEEKSRIADEQNKAKSEFLANMSHEIRTPMNGVIGMTSLLRNTRL----DE 348 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +++ I S LL +INEILD S+IE+G+ EL E L IV E +L +AQE Sbjct: 349 DQFDFVESIRISADALLEIINEILDFSKIESGKLELEEHPFVLSKIVEETYDLLSFKAQE 408 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K++++ IDP + V D +RQ+I+NL+ NA+KFT G + ++ +G Sbjct: 409 KDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDE-GEILTSIKLLEKKGSTYE 467 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S++D+G GI + ++ + SF Q + G GLGL I+ ++ G+ + S Sbjct: 468 LEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRIWVES 527 Query: 461 KLREGVEVIAIL 472 ++ G + Sbjct: 528 EVNVGTTFKFTI 539 >gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] Length = 930 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 20/363 (5%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS--------LA 190 + +++AL ++A+ P+ ++ + L I+ L+ Sbjct: 175 LLTLFLVMLALIMAAMIPA--MRFSRQLTQPISEMVNAVHRIRDGDLSITIQTQAKSELS 232 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 + + + + + + + +E+ D RK A + + KS Sbjct: 233 ELETALQQMIAALADAQTELQKNVDQATLDLRETLETIEIQNIELDMARKEALKASHIKS 292 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTPLN I+GF++++ + + +EY+ IH+S + LL +IN++LD Sbjct: 293 EFLANMSHEIRTPLNGIIGFTKLLHRSPL----SARQEEYLSTIHKSAESLLAIINDVLD 348 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMR 369 S+IEAG+ L + ++L D++ + +L AQE+ +E ++ D +R Sbjct: 349 FSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASIIYSDVPVALLGDPLRIR 408 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFG 425 QV+ NLLSNA+KFT G V V RG I++ D G G+++ + +F Sbjct: 409 QVLTNLLSNAIKFT-DHGSVVVRAMLEEDRGAEAIIKITVTDTGHGLSQENQKNLFRAFT 467 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q + + E G GLGL I++ ++ + GG+ I S G L R + Sbjct: 468 QTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGSTFWFTLRTERAPQQPVQAL 527 Query: 486 HES 488 E+ Sbjct: 528 SEA 530 >gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297] gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297] Length = 773 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 180/461 (39%), Gaps = 29/461 (6%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96 + E IL V ++ + +S+ + + +G Sbjct: 199 LTRRQPEDFLYALFILGNLVYNSTSLNVFSDVFGWTSFYSIGFPIMASNMAYIGFVWRLL 258 Query: 97 DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS- 155 I V I +G W ++ + + + A I+ I Sbjct: 259 GINRYRTPVLFRISQGALIVMGSFWLIVPFMPEMSLEFARYGVGMFALYGISSGIVMALK 318 Query: 156 ----NFMLPYAVFLSFFPVVVALSTQAIMSMHVL--DISLAGMLATALSFFTYITYHLFK 209 A P ++++ ++ + ++ I L + + I+Y L Sbjct: 319 GHHIARYYLIANVAFIIPALISIGLNSLPNSTLMIEHIGLFAVAIEVILLSLVISYQL-- 376 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 L + + +LIA ++E A+ AK RFLA++SHELRTPLNAI G Sbjct: 377 ----SLVYKEKSANLIA--------AEEALTIADNAVRAKERFLANVSHELRTPLNAIQG 424 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ + +E+ KE I I S LL LIN+ILDL+++ A + E +L Sbjct: 425 SVDLLSHSS----QDESLKEPIDMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPFNLH 480 Query: 330 DIVRECIIMLQ-LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + A I P + + DEK + QVI NLLSNA KFT G Sbjct: 481 GSIQQICSIYSNSLANNAQTRFELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTEK-G 539 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V + IS++D G GI + + +F Q +I G GLGL I+ Sbjct: 540 KVTCRLTLKDTHTLMISVQDTGIGIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRISSK 599 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I+ GG+ S+ +G LP + PE+NH S Sbjct: 600 IIEQMGGEIWAESETGQGSTFTFTLPLV-LAEAQPENNHAS 639 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822] Length = 2003 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 11/278 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLAS 255 L S+ ++ + E+ + E E + AE N AKS FLA+ Sbjct: 1496 LASANAKLQASHQQLEAKVKERTQQLEEKNLQLEQEVRERQRAEEIAEAANRAKSEFLAN 1555 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLN ILG++++ + NE K I IH+ G+HLL LIN+ILD+S+IE Sbjct: 1556 MSHELRTPLNGILGYAQICKK---DKNLNEQQKNRIEIIHQCGEHLLTLINDILDISKIE 1612 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 A + EL + D +R + + Q++A++K I + + SL V DEK +RQ+++N Sbjct: 1613 ARKMELCPTDFYFGDFLRGILEICQIKAEQKGISLIFQPLSSLPKIVQVDEKRLRQILIN 1672 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LL+NAVKFT G + V + ++D G GIA ++ + F Q Sbjct: 1673 LLNNAVKFTEK-GSITFKVSYQK-GKVNFQVEDTGIGIAPNQLEEIFLPFQQV-GEYSRK 1729 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL I++ + GG ++S L +G L Sbjct: 1730 TEGTGLGLSISRQLAQMMGGTITVKSSLGKGSIFSLDL 1767 >gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 867 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 8/254 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D+ +E+ K LSDE +K A AKS FLA+MSHE+RTP+NAI+GFSE++ Sbjct: 349 RDISERIEIEKKLSDEVKKSA-RATKAKSEFLANMSHEIRTPMNAIMGFSEILLESEKRN 407 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + +H+S +L+ LIN+ILD S++EAG+ L E L ++V + Sbjct: 408 ----EQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAY 463 Query: 342 RAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399 +A +K++++ + + + V D + Q++LNL+ NAVKFT G + +T T Sbjct: 464 QANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQG 523 Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Y + D G GI E +P ++ F Q +I +G GLGL I++ ++ +GG + Sbjct: 524 NVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSV 583 Query: 459 RSKLREGVEVIAIL 472 S L G L Sbjct: 584 TSTLGSGSCFSFSL 597 >gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 932 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G V V + +G + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + +++ + +AE N AKS FLA+MSHE+RTPLN ILG ++++ N Sbjct: 1054 INERKRSQADLLSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTT----EPN 1109 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + KEY+ RS + L L+++ILD+SRIEAGR ++ E+ + + + AQ Sbjct: 1110 DEQKEYLAGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDTDAQ 1169 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398 K + + D L + + DE +RQ++ NL+ NA+KFT G V V TS Sbjct: 1170 GKGLVLDFIWDDELPTALIGDEARLRQILFNLVGNAIKFTDK-GEVLVEASLLPSPNTSS 1228 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++ D G GI E + + F Q I+ QG GLGL I + + + GG I Sbjct: 1229 VRVLLTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDISI 1288 Query: 459 RSKLREGVEVIAILPNT 475 S L EG V LP Sbjct: 1289 DSALGEGTTVYLSLPFK 1305 >gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] Length = 928 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 157/366 (42%), Gaps = 29/366 (7%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + ++++L ++A+ F L +V+A V G+ T Sbjct: 172 RALLISGIVIILSLVLAAIMAFKLSRMFMTPLNKLVLA------TDKLVEGKRSTGLTDT 225 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEE 244 L F + L ++ + E I + E +K A++ Sbjct: 226 MLGEFDILREGLNTIADTMVMQKDEMQKNIDQATSDYRETLEQYETQNIQLTMAKKEAQD 285 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS FLA MSHELRTPLN ++GF+ + + K+Y+ I S L+ + Sbjct: 286 ANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKH----QKDYLDTIMLSANSLMTI 341 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 I++ILD S++EAG EL L D V E + +L A EK +E+ I+P + + Sbjct: 342 ISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYINPQVPDDLTG 401 Query: 364 DEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTV 420 D +QV++NLLSNA+KFT G +V ++ +S+ D G GI + ++ Sbjct: 402 DPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTGVGIPMDKQDSL 461 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----AILPNTR 476 T FGQ +I G GLGL I + I+ G+ + S G LPN Sbjct: 462 FTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTFNSVFRLPNHV 521 Query: 477 VLNFIP 482 N +P Sbjct: 522 FTNDLP 527 >gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1382 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 F +T + L ++ I E + A+ + R AEE N KS FLA+M Sbjct: 500 QVFPISVTLSPIRDETGTLMGASKIARDITERKQAEEETRLARIAAEEANRTKSDFLANM 559 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NAI+G + + + K Y+ I + + LL +IN+ILD S+IEA Sbjct: 560 SHEIRTPMNAIIGMTHLAQRT----NPTPKQKGYLTKIGNAAEALLGIINDILDFSKIEA 615 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G+ +L SL D++ + M+ ++A +K +E+ + P + + D + Q+++NL Sbjct: 616 GKLDLESIPFSLDDVLGNLVDMVGIKAGQKGVEVVLAVAPDVPRTLIGDPLRLGQILINL 675 Query: 376 LSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +NAVKFT G + + V +S++D G G+ ++ + SF Q +I Sbjct: 676 ANNAVKFTDK-GEIIIRVVNAPDIPTAGRLMVSVRDTGIGMTSEQVSNLFHSFNQADTSI 734 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + GG + S+ +G I Sbjct: 735 TRKYGGTGLGLAISKQLCEMMGGTVCVESEPGKGSTFIFT 774 >gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus 10329] Length = 932 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G V V + +G + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16] gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16] Length = 870 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 6/270 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 N + E +D IA + ++ E ++ AE N AKS FLA+MSHE+RTPLN I Sbjct: 339 IDGNDEFTRFAHELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLNGI 398 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E++ + N + KE + DI S LL LIN+ILDLS+IE+G LS + Sbjct: 399 IGMTEILSDSQL----NGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTAN 454 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386 L +I+ + + M+ +A ++ + + + + DE ++Q+++NLLSNA+KF+ Sbjct: 455 LREIIFDTMNMVNAQALKQEVTLEVEFADDVPVYAEMDEFRVKQILMNLLSNAIKFS-AN 513 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V V + I + D G GIA ++ + F Q I G GLGL I + Sbjct: 514 GSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICR 573 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ G+ ++ S + EG ILP + Sbjct: 574 QLVELMRGELVVESNVGEGSRFTVILPLVK 603 >gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] Length = 932 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G V V + +G + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 921 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 153/362 (42%), Gaps = 12/362 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G +L L + + S T+L A L+ L P+ + Sbjct: 140 GNVVGVLDLDLDLRPLYLQVLAHGSITVLAAAIALLLATHTLRRLNRAVLQPLSTLSALM 199 Query: 178 AIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 ++ + A + S + L + + + +D L E+ Sbjct: 200 ERVAHTEDYSARAEPSRIIELDSLASGFNRMLGQIAERDARLASHRDHLEDEVATRTEEL 259 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ AE + AKS FLA+MSHE+RTP+N +LG +E++ + N + + + Sbjct: 260 LRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGL----NHEQRHFAEAVE 315 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+HLL +IN+ILD S+IE+G EL L D++ + + M A++K +E+ + Sbjct: 316 NSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLP 375 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 P + V D +RQ++ NL +NA+KFT G V V IS++D G Sbjct: 376 PEVRRCVRGDPFRLRQIVGNLANNAIKFTER-GEVVVRARLLGEGTDGYRLRISVEDTGI 434 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + F Q + G GLGL I + ++ GG+ + S+ G Sbjct: 435 GIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGACFHI 494 Query: 471 IL 472 L Sbjct: 495 DL 496 >gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 1102 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 161/420 (38%), Gaps = 17/420 (4%) Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 +W + + + +++ I L + + Sbjct: 347 TLWMVGLTGSLSLLIFGWIWLIDRRIM-RPAQRQSRRLQESDALGRFVIEVAGVGLMIVE 405 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + +A + +A + + + D+ +A Sbjct: 406 RNTRQVLLANAAAQSLIDQAAPAGLAQLQDACEARLASCDTSPEGPPQVLPRFDVDMAC- 464 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 A Y+ L + + + + + E ++ E + A+ N AKS F Sbjct: 465 ---ANGETRYLEVRLVQITYDVRAALLCALNDVTEARRGEARLREAIRAADAANRAKSSF 521 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLN +LG E++ L + P ++ + + + Q L+++IN++LD S Sbjct: 522 LATMSHEIRTPLNGMLGSIELLSLSRLDP----RQRDQLAVMQHASQSLIDIINDVLDFS 577 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 +IEAG+ L L ++V E A K + + DPSLS V AD + Q+ Sbjct: 578 KIEAGQMSLQPRPCRLDEVVEEVTRNFAAEAARKRLRLLCINDPSLSEPVMADAVKLEQI 637 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFG 425 + NL+SNAVKFT G+V VT G + + D G GIA + + F Sbjct: 638 LNNLISNAVKFTEQ-GKVIVTARRKRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFV 696 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q + G GLGL I + ++ G+ + S+ G I LP P + Sbjct: 697 QAEQSDTRHYGGTGLGLSICRRLVELMRGEIRVVSEPGLGSCFIVSLPLASAGIAAPAEA 756 >gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 389 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 168/336 (50%), Gaps = 6/336 (1%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 A ++ + + S L + ++ + T + + ++ G Sbjct: 52 AVAMVDIRLGGTSGVDLLSRLKAEAPGLIGIMITAHVDTPSAIEAMRRGAYDYIDKSCA- 110 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 V IL E L E ++ AE N AKS FLA++SHELRT Sbjct: 111 -----PGELVAILERAFETHHLRMEKSRMIEALRLAKEGAEAANQAKSNFLATISHELRT 165 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+GFS +I +E MGPL+NE Y+EY+ DI+ SG+HLL++IN+ILDL++ EAG+ EL Sbjct: 166 PLNAIIGFSNLILMELMGPLSNERYREYLRDINASGEHLLSIINDILDLTKAEAGQTELF 225 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 ES I D + +L +A+E + + I L + ADE+ +Q+ LNLLSNAVKF Sbjct: 226 ESVIHPRDAIIPVERLLMPKAREAGLTLTSNITEHLPLLRADERKAKQIFLNLLSNAVKF 285 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T GG + + T I++ D G GIA I V F Q ++ G GLGL Sbjct: 286 TPPGGSIEIDAHLTHKGDLAIAVADTGIGIAPEHIDRVCEPFVQIDSSLSRRHDGTGLGL 345 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 P+ +S M H G +RSK G I P R++ Sbjct: 346 PLVKSFMELHEGSLHLRSKSGIGTCAIVTFPAKRLV 381 >gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 885 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 167/335 (49%), Gaps = 8/335 (2%) Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 N +L + L V++A+ + + +S + + + + + L Sbjct: 289 NLILLFCTALFASLVIIAIIGANLYRRIINYLSHVINTMSQIEETHDYSQKINEEGSDEL 348 Query: 216 SCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 S ++ + LI E + ++ AE+ N AKS FLA+MSHE+RTPLN I+G S+++ Sbjct: 349 SLFSKMLNKLINERHQNVLKILQAKQEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIM 408 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 G T EY+ I S Q LL LIN+ILDLS+IE+G ++ + + ++V + Sbjct: 409 A----GTKLTATQNEYLQTIETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYD 464 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 + ++ + EKN+ + +ID + + DE MRQV++NLLSNAVKFT GG +V ++ Sbjct: 465 TLTIVLAKIAEKNLTLEVEIDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVIS 524 Query: 393 VGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 T+ ISI D+G GIA+ + + + F Q G GLGL I + ++ Sbjct: 525 CSNTADYCDLLISIHDSGIGIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITL 584 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG+ + S+ EG L + V P N Sbjct: 585 MGGEISLISEKGEGCCFSIKLRSQIVTQEKPVSNQ 619 >gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 810 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 13/295 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + I S E+ EL+ + R AE N AK+ FLA+MSHE+RTP+ Sbjct: 364 RGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLANMSHEIRTPM 423 Query: 265 NAILGFSEVIELETMGP-LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 AILG++E++ + + E I I R+G HLL +IN+ILDLS+IEAG + + Sbjct: 424 TAILGYTELLAENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLSKIEAGMMTVEK 483 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 L +V++ ++Q +A K I + + L ++ D ++Q+++NLL NA+KF Sbjct: 484 IPTDLAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQILVNLLGNAIKF 543 Query: 383 TAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G V + V + I + D G G+ ++ + +F Q + G G Sbjct: 544 T-EHGEVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADTSTTRKFGGTG 602 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-------PNTRVLNFIPEDNHE 487 LGL I++S+ GG I S+ +G + P+ V PE + + Sbjct: 603 LGLRISKSLAQLLGGNITISSEPGKGSVFQLTISTGLAEAPHEVVTEVKPESSTK 657 >gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316] gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316] Length = 919 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISGLMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLTIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L + +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +QVI NL+ NA+KFT G + V S I + +D G GI E + + +F Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ +G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTFWFHI 516 >gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ] gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ] Length = 470 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 106/300 (35%), Positives = 170/300 (56%), Gaps = 14/300 (4%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + ++ A + +T +++ NVK+L+ Q + A E ++ AE+E Sbjct: 182 NFVFVILVGIAAAICIVLTLVIYRKNVKLLNSQYD----------ANLELQEKKENAEKE 231 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +++KS+FLA++SHELRTPLN+I+GFSE+++ E++GPL N YKEYI +I+ +G HLL+LI Sbjct: 232 SVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEYIKEINHAGVHLLSLI 291 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILD S+ EA + + L IV C M+ +AQE +E+ + + S + D Sbjct: 292 NDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVELKRDMPESQIVLMVDA 351 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + M+QVILN+L+N++KFT G V ++V I I DNG GIA+ ++ V++ FG Sbjct: 352 RRMKQVILNILTNSMKFTPEKGFVRLSVEKKQE-EVVIEICDNGIGIAQQDLYKVMSVFG 410 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +G GLGLP+++ ++ G F I+ + G V P + PE Sbjct: 411 QADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTLSFPC---VEESPESE 467 >gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1239 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 102/507 (20%), Positives = 191/507 (37%), Gaps = 32/507 (6%) Query: 6 KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLF----RVSPILPLFVLLVAN 61 ++ +D I L F + TL ++L + + ++ Sbjct: 283 EHVSRD-ENDIQAATGLLHNAAALSKRFAERVATLEAQTLSFRLSPSAEVAGSVGEILDE 341 Query: 62 IGTWFTQNPIFPMWSLITLAVYAANLSLGKK--VMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + P + ++ G + + + R + + GL Sbjct: 342 LSRLARVLPSSVGLQAKATPLTVSDQIAGYRAAFARFNQASNALSGARDQVRNEARSAGL 401 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 + + ++I + F++ V +A + + Sbjct: 402 LVARFAGQARSDALIHNDRGMLATIVAGTVAILLAGAIAWSTSRFIAQPIVALASVMRRL 461 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL----------- 228 + + + + T ++ ++I +AE + ++ Sbjct: 462 AAGDLNAKIASAERGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAER 521 Query: 229 -----------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E + R +AE N AKS F+A++SHELRTPL IL E + Sbjct: 522 TDALHHQTEVLEAQAIELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAA 581 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 T P + + R+ L+N +N+ILD S+ EAG++EL + L V Sbjct: 582 TTPPADWHVQ---VDRAQRNALRLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAE 638 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A+ K + IDP+L +V+ D + +++LNL+SNA+KFT GG VH+TV Sbjct: 639 DAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLTVTALD 698 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G +++D+G GIA ++P + F Q + G G+GL + + ++ GG+ Sbjct: 699 GERFEFAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVG 758 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPED 484 + S+ +G LP N +P + Sbjct: 759 VNSEPGQGSCFFVRLPLGAEQNTVPTE 785 Score = 90.3 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF- 382 + + +++ + + M + + + + I L + D M +++NL++NA + Sbjct: 1084 ETVPVAELIDDALRMSAGLLARQEVTVVKDIA-DLPLLPLDRHRMLLILVNLINNAKQAL 1142 Query: 383 ---TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 V + G I++ DNG GIA + + S + + G G Sbjct: 1143 DGVIDRSRCVTFSASLADGAVLRITVADNGNGIAPEHLARIF------SHGFTTRKDGHG 1196 Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479 GL GG +RS +G I +P L+ Sbjct: 1197 FGLHSCALAAQEMGGSLTVRSDGAGQGATFILDIPLDAPLS 1237 >gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 6/237 (2%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R++ E ++ F+A++SHELRTPL +I GF E + + E + ++ + Sbjct: 224 RRKLE---QMRTEFVANVSHELRTPLTSISGFLETLLDGAL--EEPEIARRFLEHMSDET 278 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L LIN++L+LS IE ++ + + + +++ + + RA+EK + + + P+L Sbjct: 279 ERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNL 338 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V DE + QV+ NL+ NA+K+T G++ + + + I + D G GI + Sbjct: 339 PPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVI-VTDTGIGIPTESLA 397 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + I+ HGG + S + +G ILP Sbjct: 398 RIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFILPVA 454 >gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 640 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 170/412 (41%), Gaps = 23/412 (5%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + A+ A L ++++ + W + ++L T Sbjct: 75 LGLIAALIANVLFGAQRLVTELLTNQVTGWWINVFGAVAL------SMLYFYFRMDQTKR 128 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST--QAIMSMHVLDISLAGML 193 + L AL + + + + + + A+ +L + Sbjct: 129 FRLCAHIGIALCALGLVVPVLYGMTSSSWWLVILPLAAVLLMGVRHGVPWAGICALTMVA 188 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIA--------ELEVAKSLSDETRKRAEEE 245 I ++ V+ + ++ E + R AE+ Sbjct: 189 IHLFGESLLIANAAGETTVESSGSRVMLVLILFGIAARSRWVAERQTDELRQARDAAEQA 248 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+N +LG + ++ + N+ ++Y I SG+ LL +I Sbjct: 249 NQAKSDFLANMSHEIRTPMNGVLGMTGLLLESNL----NKEQRDYATSICHSGEALLAII 304 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWAD 364 N+ILDLS+IEAGR E + SL +V + +L++RA++K + + D Sbjct: 305 NDILDLSKIEAGRMEFESNPFSLDVLVDSVVSVLRIRAEDKGVFFSVGLPEGDGMDYVGD 364 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +RQV+ NLL NAVKFT G V + + + ++D+G GI++ + + ++F Sbjct: 365 SLRIRQVLFNLLGNAVKFTMQ-GEVRLEIKVITNG-LRFEVRDSGIGISQEGLARIFSNF 422 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q + G GLGL I++ ++ G + S+L +G LP + Sbjct: 423 VQVDSSTSRKFGGTGLGLVISRKLVEGMNGSMGVESELGQGSCFSFELPLKQ 474 >gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] Length = 424 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 11/243 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F++++SHELRTPL +I G++E + + + + E ++++ I + LIN++ Sbjct: 189 RKEFISNVSHELRTPLTSIHGYAEALLEDDL--EDKELIRKFLSIIESEAARMTRLINDL 246 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDL ++E+G + I+ +++ +++ A++ +E+ L V D+ + Sbjct: 247 LDLEKLESGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVYPDELYLV-GDKDRL 305 Query: 369 RQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 Q+ LNL+ NA+K+T G+ VTV W + +KD G GI E + F Sbjct: 306 TQMTLNLVDNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVGIPEKAQKKLFERFY 365 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + A G GLGL I ++I+ H G SK G + + LP R EDN Sbjct: 366 RVDKARSRKMGGTGLGLSIVKTIVEKHNGVIEFTSKEGVGTKFVVTLPINRE-----EDN 420 Query: 486 HES 488 +E+ Sbjct: 421 NET 423 >gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s] Length = 607 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 16/266 (6%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + ++ +L + K +++E + N AKS FLA+MSHE+RTP+NA+LGF+++++ Sbjct: 286 QEKEQRQELTYKNIRLKKMTEEAK----AANRAKSEFLANMSHEIRTPMNAVLGFADLLQ 341 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + YI I SG+ LL LIN+ILDLS+IEAG+ +L +++ I+ E Sbjct: 342 STI----TDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEI 397 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + + +A+EKNIE+ I P + + DE +RQ++ N++ N++KFT G ++ + Sbjct: 398 EHIFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASC 457 Query: 394 GWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 Y I+I D G GI+ + + SF Q G GLGL I + Sbjct: 458 SQLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITER 517 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 ++ GG + S++ +G P Sbjct: 518 LVHLLGGSIHLESQINQGSTFTFDFP 543 >gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 914 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 97/441 (21%), Positives = 183/441 (41%), Gaps = 29/441 (6%) Query: 55 FVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY-VWRIWLL 111 LL A + S+ + + + + + + L Sbjct: 220 VGLLAACFDGMLFKLLPEHVAFQSVSIYILMYLHCLTAIQFSRHFLHARQYFPRLDTGLR 279 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + +A + L+ W +L + L+ + + Y + + + Sbjct: 280 LLMLACAGILVSVPLIGLTVWNILASVTVSLVSLALLLTGLYVWRRGVRYGSYYTLAWAI 339 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + + + + ATA+ + L + + Sbjct: 340 MLFAFIQATTGSLGLEVFGVFGATAVKIGV------------TIELITLSIGLADRINLL 387 Query: 232 KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 K ++R+ AE+ + AKSRFLA MSHE+RTPLN +LG +++ + + + + Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQR 443 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I SG L+ +IN+ILD +RIE+G+ L + L D++ E + + +A +K + Sbjct: 444 FYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRL 503 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403 ++ ++ + + D ++QV++NLLSNA+KFTA G V V+V S Sbjct: 504 RLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHGQPHLVF 562 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D+G GI+E + + SF QG + G GLGL I++ ++ GG+ ++S Sbjct: 563 AVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPG 622 Query: 464 EGVEVIAILPNTRVLNFIPED 484 +G +P P+D Sbjct: 623 QGTRFAFDIPLLEA-PEAPDD 642 >gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 910 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 166/371 (44%), Gaps = 6/371 (1%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-PVVVALSTQA 178 T + E + I+ + ++ L I +N++L +F A + Sbjct: 266 LITEIPESEATELSTRSGIIFTISLIISGLVILLATNYLLDRFIFRILAELRRGAERVGS 325 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 L + +A S F + L N +I + E + Sbjct: 326 GDLSQPLPVPQEREVAQVASAFNTMMSQLRARNAEIARQTESLKAEVQERRRIEQELIRA 385 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R AE + AKS FLA+MSHELRTPL AI+G+S+++ + + ET + I +G Sbjct: 386 RDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLL-EQLVDKGIYETVAHDVRRIRAAG 444 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 HLL LIN+ILD+S+IEAGR +S + D+VR+ + + + ++ + + P + Sbjct: 445 NHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQMEKNHNRLQLHCPPDI 504 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEG 415 + +D +RQ ++NLLSNA KFT G V +TV G+ ++ D G GI Sbjct: 505 GMLNSDATKVRQALINLLSNAAKFT-ENGTVTLTVTRYEDEGRLWFRFTVADTGIGIPPD 563 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + +F Q + G GLGL ++Q + GG+ ++S + G +P + Sbjct: 564 KLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQSTVGVGSVFTIEVPAS 623 Query: 476 RVLNFIPEDNH 486 L +H Sbjct: 624 LSLPTPVPADH 634 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL KS FLA+MSH Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + ++ K+Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL L ++ + + L+AQE+ +E+ + + D + QV++NLLS Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + + +F Q + Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG+ ++S+L G + Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 >gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 837 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 141/254 (55%), Gaps = 3/254 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + A+ + AE + AKS LA+++HELRTPL +I+GFS+V+ G L Sbjct: 587 RDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDVLLKGKAGDL 646 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE+ K Y+ +H +G+HLL+LI +ILDLS+IE+G+ L+ IS+I++V + +Q Sbjct: 647 -NESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERISIIELVNDLKEYIQPF 705 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 K + + ++D L+ ++AD ++Q++ NLL NAVKFT G + + V Sbjct: 706 VSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEE-GSITLEVSQNEDD-VQ 763 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI +G + SF Q QG GLGL + ++ HGGQ + S++ Sbjct: 764 FSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHGGQIWVESEI 823 Query: 463 REGVEVIAILPNTR 476 ++G +P+ R Sbjct: 824 KKGSRFTFTIPDNR 837 >gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1102 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 10/256 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + AEE + KS FLA+MSHELRTPLN ++G +E+++ G N Sbjct: 428 IQRRKETEQKLKAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQ----GTHLN 483 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +E++ SG+ LLNLIN+ILD S+IEAG+ +L L +++ + + L R Sbjct: 484 QHQQEFVDACRSSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTN 543 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EKN+E+ +DP ++ D +RQ+++NL+ NA+KFT G V V S Sbjct: 544 EKNLELPCFVDPESRLTLKGDSYRLRQILVNLIGNAIKFTDS-GEVVVRTRTVSRENGNI 602 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+ D G GI+E +I + SF Q + G GLGL I+Q+++ GG+ I Sbjct: 603 RIHFSVTDTGIGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIE 662 Query: 460 SKLREGVEVIAILPNT 475 S+ G +P Sbjct: 663 SQDGVGSTFWFEIPFE 678 >gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 968 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 7/285 (2%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 L + IL + + + E E + ++RAE + AKS FL Sbjct: 541 LGILVVMDVQPLTDIELARSILGIFSGRAAMELEREETELALRVAKERAEAASQAKSEFL 600 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A MSHE+RTP+NAILG +E+++ + + + E++ ++GQ LL LIN+IL+LSR Sbjct: 601 AMMSHEIRTPMNAILGITELLQEQP----SKKEQLEFLTVQAKAGQALLTLINDILELSR 656 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVI 372 +EAGR +L + L +++R +L+ A+ K + + +I L + DE+ +RQV+ Sbjct: 657 LEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHLEIAEGLSPNWIGDERRLRQVL 716 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NL+ N +KFT G + ++ + I +KD+G GI + F Q Sbjct: 717 INLVGNGIKFTNR-GSIWISAQPMANG-LEIRVKDSGAGINPRHHDKIFERFHQVDSTAT 774 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I + +M GG+ + S+ +G LP + Sbjct: 775 RKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLALPLSEA 819 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 914 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 12/276 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E K + ++ AE AKS FLA+MSHE+RTPLN I+G+S+++ + Sbjct: 500 RDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTPLNGIIGYSDLLAETLVDTS 559 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE Y + +S LL+++N+ILD S+ EAG+ +L+E L +++ E I ++ ++ Sbjct: 560 FNE----YAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEVPNDLKNLILEAIKIMDIQ 615 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A ++I ID S+ +V D +RQV+LNL+ NA+KFT G + + Sbjct: 616 AIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFTET-GFIECRLTRLESAIK 674 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 IS+KD G GIA+ + SF Q + G GLGL I + ++ + Sbjct: 675 QEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTGLGLAICRQLLQLMKSEL 734 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 ++S++ +G E +P R+ P EST+ K Sbjct: 735 KLKSEVGQGSEFFFEIPF-RIPEIDPNLLLESTESK 769 >gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1122 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 Y V+ L E L E ++ ++ R AE + +KS F+A+MSHE+RTP Sbjct: 679 PYRWRDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTP 738 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 + AILG+++++ + + E++ I R+G +LL +IN+ILDLS+IEAG+ E++ Sbjct: 739 MTAILGYADLVRD----MIEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNH 794 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 ++ + ++++RA+E + + + L + +D K ++Q+++NL+ NA+KF Sbjct: 795 EKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKF 854 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V + V + + +I I D G G+++ + + F QG ++ G GLGL Sbjct: 855 TQK-GWVQIRVRF--NKWLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGL 911 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ + GG + S G Sbjct: 912 AISKRLTEMLGGTIIASSTEGVGSTFTVS 940 >gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01] gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01] Length = 1059 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 157/345 (45%), Gaps = 16/345 (4%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L ++ +V+ L+ + + L + L + ++ Sbjct: 297 TLFISIVALLATIVMGLTLTLARQVTNNLKLVLDFLKSESDETRPSLEKLIQGKDELSVF 356 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGF 270 + + L E E AK + AE + + AKS FLA+MSHE+RTPLN ++G Sbjct: 357 AQKVERLTIEREHAKEKLTLAVEDAEKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGI 416 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 SE++ + P T ++Y+ I S Q LL+LIN+ILD S+IE+G +S + S+ + Sbjct: 417 SEILADTPLTP----TQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRE 472 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-R 388 + + ++ +A+E+ I + I P V D+ +RQ+++N +SNAVKFTA GG Sbjct: 473 SIYDIASIVAPKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVT 532 Query: 389 VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + S I ++D G GI + + + F Q + G GLGL I+ Sbjct: 533 LSIKTLEQSDDNVTIRFAVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAIST 592 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++ GGQ + S EG L V +P+ + + Sbjct: 593 QLVELMGGQIQLDSVKGEGSCFYFDLEL-PVDMMLPKPSTATADI 636 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL KS FLA+MSH Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + ++ K+Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL L ++ + + L+AQE+ +E+ + + D + QV++NLLS Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + + +F Q + Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG+ ++S+L G + Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 >gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4] gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4] Length = 641 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 15/331 (4%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML---ATALSFFTYITYHLFKSNVK 213 F++ +F ++ L + + L + + + + F V Sbjct: 151 FLMVAEAIKTFLLILAVLWVTFRLIVKPLQLLSGAVSDFSGGYVPSKVQLPKRWFFDEVS 210 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L + + + + +E R +AE N KS FLA+MSHE+RTP+N I+G + + Sbjct: 211 LLEYKYNLS--VERVRERQVEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASL 268 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + ++ K+ + I+ S L+ +I++ILD S+IEAG+ EL + +L D++ Sbjct: 269 LNDTKL----DKQQKDLVNVINSSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLS 324 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + ++AQ+K++++ IDP L V D ++QV+ NLL+NAVKFT G V + Sbjct: 325 EVGRLHTVKAQQKSLQLVCDIDPQLPLEVEGDVGRLKQVLNNLLTNAVKFTER-GYVKLL 383 Query: 393 VGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V S RG+ + D+G GIA+ V F Q + G GLGL I + Sbjct: 384 VSQVSRRGRVANVLFRVVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRL 443 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + GG+ L+ S+L G +P V + Sbjct: 444 IEVMGGKILLTSELGLGSCFEFTIPLNIVSD 474 >gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 639 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 12/323 (3%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + + +AL +++ ++ + + A+ Sbjct: 317 QTFAVGLIGLFIALLVSYLINRGIIKPLEQLKQGAERLSNGRYDQKVIVDSDDEFGELAK 376 Query: 221 K-----DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + E K ++E + +E + KS +A +SHELRTPL +I G+ E Sbjct: 377 AFNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVE 436 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ TMG + N++ ++ + + L LI +LDLS+IE G E+ +++ +IV Sbjct: 437 LVLDGTMGAI-NDSQRKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIV 495 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + I L+ A EKNI++ + ++ ++ AD+ + QV+ NL+ NA+KF+ + V Sbjct: 496 GDVIQYLKPLATEKNIKLNKNVEK--ITLEADKDRITQVLTNLIENAIKFSPANESILVN 553 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G G ++ + D+G GI + ++ V F Q + K + G GLGL + +SI+ H Sbjct: 554 -GTLEDEGLHLKVTDHGAGIPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAH 612 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG + S+L +G ILP + Sbjct: 613 GGSIWVESELGKGSTFHIILPIS 635 >gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 685 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 165/370 (44%), Gaps = 16/370 (4%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W W+ L E + +A ++ +L + + L Sbjct: 32 WNRWMERASGLKRAEVLGRPLREVFPELVGGRLLRA-----VATALETGLPALLSHKLNL 86 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 P+ + + + I + + F I V+ E+ ++ Sbjct: 87 WPLPLYPSYAVRPHGPRLCQQIMINALRPHGEKRFVLIQIQDISHTVQREQLLQEQTRVL 146 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + E +R +A++ N AKS FLA+MSHE+RTP+NAI+G ++++ + N+ Sbjct: 147 MQRE---EELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETEL----NK 199 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + Y+ R+G LL LIN++LDLS++EA R EL L +V + + LR QE Sbjct: 200 DQRRYVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRTQE 259 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQ 401 K +++ ++ V +D+K +RQ+++NLL NAVKFT G V V +G Sbjct: 260 KGVKLDFELSARAPRYVISDQKRLRQILVNLLGNAVKFTQSGQIQLWVDVRDCEDAGGWL 319 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y ++D+G G+++ + ++ F Q ++ G GLGL I + ++ G + S+ Sbjct: 320 YFRVQDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAICKKLVELLSGDIWLESE 379 Query: 462 LREGVEVIAI 471 L +G Sbjct: 380 LGQGSRFHFT 389 >gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 885 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 143/262 (54%), Gaps = 7/262 (2%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 I + + + + ++ AE + AKS FLA MSHELRTPLNAILGF++++ Sbjct: 376 REYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLM 435 Query: 275 ELETMGPLNNE--TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 E E N +KE++ I RSG+HLL LIN++L++S+IEAGR L+ + +LI ++ Sbjct: 436 ERELYHNPNIPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLL 495 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-H 390 ML+L A K + + ID + + ++ADE+ +RQ ++NLL NA+KFT GG + Sbjct: 496 NSLREMLELPASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIKFTVKGGVILR 555 Query: 391 VTVGW--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V +G + ++D GPGI E+ + F Q S QG GLGL I Q Sbjct: 556 VKLGKFNHDFGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQ-QGTGLGLSITQKF 614 Query: 449 MANHGGQFLIRSKLREGVEVIA 470 + GG+ + S+ +G Sbjct: 615 IGLMGGEIQVSSERGKGTIFRF 636 >gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida LFI1238] gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida LFI1238] Length = 929 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 161/332 (48%), Gaps = 19/332 (5%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYI 203 S + F L V P+ +S + L++ + L L + + Sbjct: 188 SGVFAFRLMQDV---TQPISHMVSVVDRIRRGHLNVRIENKLHGELDTLKNGINAMAISL 244 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + I ++ + + +LE+ D +KRA+E KS FLA+MSHELRTP Sbjct: 245 SDYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ++GF+ + ++ ++ K+Y+ I RS +LL +IN+ILD S++EAG+ L Sbjct: 305 LNGVIGFTRQMLKTSL----SDNQKDYLQTIERSANNLLTIINDILDFSKLEAGKLLLEN 360 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 D + E + +L A EK +EI KIDP + S + D ++QV+ NL+ N++KF Sbjct: 361 LPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDPRIPSGLIGDPLRIQQVLNNLVGNSIKF 420 Query: 383 TAIGG-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G + + + + ++D G GI+E + + +F Q +I G G Sbjct: 421 TEKGNIDISIELKHLNDDFIDVQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 LGL I Q +++ GG+ + S+L +G Sbjct: 481 LGLVITQKLVSQMGGEIGLSSRLHQGSTFWFT 512 >gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] Length = 470 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + FLA++SHEL+TP+ +I GFSE + M N + + ++ I + + Sbjct: 236 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--ENQQFCEHFLHIILKESER 293 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LI ++LDLS+IE ++L+ + + +++ E ++L+ ++QEK I + + S Sbjct: 294 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQVDVL-RHVS 352 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++Q+ +NL++NA+ +T GG V V + YI + D G GI+ EIP + Sbjct: 353 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVAL-LEDEHNAYIKVSDTGIGISTEEIPRI 411 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G + S + EG LP Sbjct: 412 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPKA 466 >gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] Length = 580 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 3/229 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHEL+TP+ +I GFSE + + + E E++ I + L Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTEFLSIILKESVRLET 409 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI ++LDLS+IE +++L+ + +I++E ++L+ +A EK I++ ++ V A Sbjct: 410 LIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYVMA 469 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D ++Q+ LNL++NA+ +T GG V ++ + D G G+ + EIP + Sbjct: 470 DPLRLKQIFLNLVNNALTYTPEGGSVTISARPRK-GAYEFDVADTGIGMKKSEIPRIFER 528 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + G GLGL I + ++ H G +RSK +G L Sbjct: 529 FYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSL 577 >gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 735 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 43 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 99 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 100 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 156 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 157 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 212 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 213 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 272 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 273 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 332 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 333 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 382 >gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328] gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328] Length = 522 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 97/271 (35%), Positives = 147/271 (54%), Gaps = 9/271 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L ++ +L+A+ + + ++ A+ N AKS FLA+MSHELRTPLNAILGF++ Sbjct: 92 SQLGVAVQQAELLAQTQEQARQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQ 151 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ +++I I+RSG+HLL LIN+IL++SRIEAG L +A L D + Sbjct: 152 LMSTN---QNLAPEKRQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFL 208 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + +LRA KN+ + + L + AD+K +RQV++NLL NA+KFT G V V Sbjct: 209 KSLEDFFKLRATSKNLHLIFERPQGLIRYIKADDKKLRQVLINLLVNAIKFTDE-GSVTV 267 Query: 392 TVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + ++D G GIA + + +F Q + A +G GLGL IAQ Sbjct: 268 RVSHQNQDTSDILKFEVEDTGLGIAPEDCEGLFEAFAQTETGLN-ASEGSGLGLAIAQQF 326 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + GG+ +RS L +G +P R + Sbjct: 327 VTLMGGEITVRSCLNQGSTFSFTIPVQRTED 357 >gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 576 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 41/397 (10%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G ++ + P T L + L A+ + L A+ ++ V + Sbjct: 170 GDLIGMVKISFPLEKTQRSLAWNNAILLTTAIVTAFL-------AMLAAYAIVRYVIVKP 222 Query: 178 AIMSMHVLDISLAGML-----ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + V D G L F +++ + +++ Q E + +L+ Sbjct: 223 VLHLKDVSDAIARGSLDMRADIRTGDEFEELSHAFNRMLRHLVTVQEELQHVNHDLDGKV 282 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R E N K+ FLA+MSHELRTPLN+ILGFSEV+ + P + + Y+ Sbjct: 283 DELAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLSTSTLP---DKQRRYVS 339 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 +I +G++LLNLIN++LDL++IE+GR EL S S+ D+V + L A++K++E+ Sbjct: 340 NIQTAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTS 399 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYIS-- 404 ++ P + +W D ++Q++ NLLSNA+KFT GG+V V V + + I Sbjct: 400 EVSPEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAG 459 Query: 405 ------------IKDNGPGIAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQ 446 ++D G GI E V F QG + +G GLGL I + Sbjct: 460 DAPPVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVR 519 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + GG+ ++S+ +G +LP E Sbjct: 520 ELSRLMGGEVRLQSEFGKGSVFTVVLPLKLKAQSESE 556 >gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 815 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 162/386 (41%), Gaps = 22/386 (5%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VA 173 + G + L + L + + LS L+ F+ P+ +A Sbjct: 152 LLDGQQIGTVVLQSDSREFTDRLARFFFLVAGVMLSALLLAYFLASRLQRFISAPITHLA 211 Query: 174 LSTQAIMSMHVLDIS--------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 +A+ + + L ++ I K +AE Sbjct: 212 QVIKAVSAEKTYSVRAQKQGNDELGTLIEGFNDMLVQIQQRDEKLEAHRQELEAEVQRRT 271 Query: 226 AELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 AEL A ++ +++ AE +LAKS+FLA+MSHE+RTP+N +LG V+ Sbjct: 272 AELSAANCELNQTVAELRVSKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESG 331 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + + SG+ LL++IN+ILD S+IEAGR EL + L D++ + M Sbjct: 332 LAG----EQRRFAEAVRNSGESLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEM 387 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 AQ K + + ++DP+L V D +RQ+++NLL NAVKFT+ G Sbjct: 388 FAAGAQRKGVTVSLQLDPALPRYVEGDPVRLRQILVNLLGNAVKFTSRGSVQLKAAALAG 447 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI + SF Q + G GLGL I++ + GG+ Sbjct: 448 EGWLRFEVADTGIGIRPEAQAHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELG 507 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPE 483 ++S+ G + VL PE Sbjct: 508 LQSEYGVGSAFWFSV-RLEVLCGAPE 532 >gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] Length = 731 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 18/293 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 Y L K + + E L E+ K+ K EE NLAKS FL+ M HE+RTPL Sbjct: 39 YQLEKLIISLGDYFQELQYLQEEIAEQKASE----KALEELNLAKSEFLSMMGHEIRTPL 94 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA+ G + ++ + ++ KE++ I SG++LL +IN ILD S+IEA + EL E+ Sbjct: 95 NAVTGMTGLLLDTEL----SDQQKEFVNIIRNSGENLLTMINNILDFSKIEANKLELEEA 150 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L + E + + +A +K +E+ ++P+ S + D ++Q++ NL+ NAVKFT Sbjct: 151 PFELGLCIEEVLRLFVSQASQKKLELAYLLEPNTPSGIVGDSTRLKQILANLIGNAVKFT 210 Query: 384 AIGGR-VHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 G ++V+ G ++KD G GI + + F Q + Sbjct: 211 PEGEVVIYVSSTVIEGGEGEVNPNYELRFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQ 270 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + GG+ + S+ +G L + P + E Sbjct: 271 YGGTGLGLVISKRLSELMGGKMWVHSEEGKGSTFNFTLRAKAATSSSPVTSQE 323 >gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1447 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 3/257 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E +++++L E ++ AE N K+ FLA+MSHELRTPLN+I+GFS+++ + G LN Sbjct: 1190 ITEKKISENLLHE-KQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELNR 1248 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + IG+I SG+HLLNLIN ILDLS+IEA + EL+ L + +L A Sbjct: 1249 KQLR-AIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVAD 1307 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +KNI+I +D L+ + ADE+ +++ NL+ NA+KF+ V + +G I+ Sbjct: 1308 KKNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGA-RKNGNLVEIT 1366 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F Q + QG GLGL + + I+ HGG RS+ E Sbjct: 1367 VTDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGE 1426 Query: 465 GVEVIAILPNTRVLNFI 481 G +P + + Sbjct: 1427 GSTFAFAIPIASKMKVL 1443 >gi|119774168|ref|YP_926908.1| hybrid sensory histidine kinase BarA [Shewanella amazonensis SB2B] gi|119766668|gb|ABL99238.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 941 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 159/367 (43%), Gaps = 24/367 (6%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + + LD L G L Sbjct: 193 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITDMVKLVGKIREGKLDARLEGNLI 249 Query: 195 TALSFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L ++ + + I ++ + + ++E+ D +K A+E + Sbjct: 250 GELDLLNRGINAMAASLSEYHDEMQQNIDQATSDLRETLEQIEIQNIALDRAKKDAQEAS 309 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + EYI I RS LL +IN Sbjct: 310 RIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHS----SQMEYIKTIERSATSLLQIIN 365 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EA + L L + + I +L A K +E +D ++ + D Sbjct: 366 DILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPENLSGDV 425 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 + QV+ NLL NA+KFT G + +++ + + D G GI + + Sbjct: 426 MRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDPEQQELLFQ 485 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSI-MANHGGQFLIRSKLREGVEVIAILPNT----RV 477 +FGQ +I G GLGL I + + + GG+ S++ +G +P V Sbjct: 486 AFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVPLQLSPFPV 545 Query: 478 LNFIPED 484 + +P + Sbjct: 546 HDTLPLE 552 >gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 528 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 103/436 (23%), Positives = 172/436 (39%), Gaps = 42/436 (9%) Query: 80 LAVYAANLSLGKKVM--NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 +AV A G+ + GEV G ++ Sbjct: 84 IAVAALYTKEGRTFALYRRQVSDGEVIPAAPRADGSAFEGGRLILFHPIILDYEKIGTLY 143 Query: 138 T------IYKSATLLIALSISALSNFMLPYAVFLSFF-------PVVVALSTQAIMSMHV 184 Y + + + L L S V +A + + Sbjct: 144 IQADTQEAYARLQVSVVIVFGVLLASSLVALYLASTLEGVISKPIVNLAETAAIVSEKQD 203 Query: 185 LDISLAGMLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + +AG L L + + ++ Q +D L +E E +++AE Sbjct: 204 YSVRVAGSGRDELGRLIAGFNEMLAQIQRRDVAIQEARDRLEGAVEERTRQLLEAKQQAE 263 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS FL++MSHELRTPLN+I+GF+ +++ + L + + + I SG+HLL Sbjct: 264 EASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQ-LMRHISTSGEHLLA 322 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LD+S++EAG+ L A L + + + + +A +K ++ +D + + A Sbjct: 323 LINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLSMDHDMPIIKA 382 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------------------SGR 399 D +Q++ NLLSNAVKFT +GGR+ V G Sbjct: 383 DPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPLHPIPCTQYPGE 442 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D G GI ++ + F Q + QG GLGL + + ++ HGG Sbjct: 443 CVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTKQFQGTGLGLALTKQLVELHGGTIGAA 502 Query: 460 SK-LREGVEVIAILPN 474 S+ G LP Sbjct: 503 SEGPGRGSTFTVRLPL 518 >gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] Length = 937 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 161/352 (45%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD + G L Sbjct: 183 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTRVDGNLI 239 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 240 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 299 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF++ + + + ++Y+ I +S +LL IN Sbjct: 300 RIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYVNTIEKSATNLLGSIN 355 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +L + + + I +L A++K+IE+ IDPS+ + D Sbjct: 356 DILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVDIDPSIPEDLSGDA 415 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 Q+I NL+ NA+KFT G + + + + + + D G GI E + + Sbjct: 416 MRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTGIGIDEDQQELLFQ 475 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ SK G LP Sbjct: 476 AFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHSKPNTGSTFWFTLPL 527 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL KS FLA+MSH Sbjct: 672 WVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + ++ K+Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL L ++ + + L+AQE+ +E+ + + D + QV++NLLS Sbjct: 788 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + + +F Q + Sbjct: 848 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG+ ++S+L G + Sbjct: 907 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 >gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] Length = 929 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 LLI L +SA+ + L Y V P+ + + LD+ + G Sbjct: 174 IFSAFLVLLIGLGLSAVFAYRLMYDV---TRPISHMKNMVDRIRRGHLDVRIEG---KMH 227 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 228 GELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ + +Y+ I +S +LLN+IN Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTN----SQTDYLQTIEKSANNLLNIIN 343 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + E + + A EK +E+ KIDP + + + D Sbjct: 344 DILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDP 403 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++QV+ NL+ N++KFT G + V + + ++D G GI+E + + Sbjct: 404 LRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDLVELQFMVRDTGIGISERQQSQLFQ 463 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 464 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola AmH] gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola AmH] Length = 1030 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 150/285 (52%), Gaps = 12/285 (4%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L+ L+ T IT + ++ E ++ E A ++ E+ ++AEE AKS F Sbjct: 342 LSNLLTSLTPITGKEVQIDITTPQGMDEALKIVDE---AIKVTQESVRKAEEATKAKSLF 398 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLN ILGF E++ + E +Y+ I +S ++LL ++N ILD+S Sbjct: 399 LANMSHEIRTPLNGILGFLELLNTTDL----TEEQLDYVNTIAQSAKNLLQIVNNILDVS 454 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371 +IE+ + L +D I + A +KNIE+ +I P++ S+ D ++++ Sbjct: 455 KIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIPSIIKGDILKIKEI 514 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + NLLSNA+KFT G +HV + Y ++D+G G++E + + +F Q Sbjct: 515 LTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYFEVRDSGIGMSEEQKEKIFEAFSQA 574 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I +S + GG+ + S+L +G + L Sbjct: 575 DESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGTKFYFNL 619 >gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1258 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 144/333 (43%), Gaps = 38/333 (11%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE 244 + + G L L F + +++I + + E+E ++ + R A Sbjct: 484 VIVNGQLYGTLCFVSLTPRQTPFKDIEIELLRLMAQWIGGEIERQQAAQELAQARDVALA 543 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 AKS FLA+MSHE+RTP+N ++G + ++ + +E++ I SG LL + Sbjct: 544 ATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTS----QQQEFVTTIRHSGDTLLTI 599 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 IN+ILD S+IE+G+ EL E + L + C+ +L +A +KN+E+ +I P + Sbjct: 600 INDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIG 659 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------------------ 399 D +RQ+++NLLSNAVKFT G V V+V Sbjct: 660 DVTRLRQILVNLLSNAVKFT-QSGEVIVSVNAEKLDYEQWERPETKTSLTPRITPSVATP 718 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++KD G GI + + F Q + G GLGL I + + GG Sbjct: 719 HYRIQFAVKDTGIGIPPERLNRLFQPFSQVDSSTTRKYGGTGLGLAICKQLCEMMGGTMW 778 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ G L V+ P + Q Sbjct: 779 VESQEDIGSTFYFTL----VVPADPSTQQNTNQ 807 >gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 755 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 150/255 (58%), Gaps = 1/255 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I+ + A+ +++AE + AKS FLA MSHELRTPLNAI+GF+E + + +GP+ Sbjct: 494 EDISWRKRAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPM 553 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E Y+EY GDI SG+HLL +I +ILDL++IEAGR EL + + + +V + +L+ R Sbjct: 554 -PERYREYAGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDR 612 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + + + P L V ADE+ +RQV++NLL+NAVKFT GGRV V+ T G Sbjct: 613 GAAAGLNLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLE 672 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G G+ E E V+ F Q I +G GLGLP+ +IM HGG I S+ Sbjct: 673 LHVSDTGIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQP 732 Query: 463 REGVEVIAILPNTRV 477 G V P R+ Sbjct: 733 DAGTRVTVTFPPRRI 747 >gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 917 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 104/395 (26%), Positives = 167/395 (42%), Gaps = 14/395 (3%) Query: 91 KKVMNSDIKIGEVYVWRIWLL-----VGQIAIGLCWTLLTLVEPGTWTP---EYLTIYKS 142 + S GE + V G W L + T + + Sbjct: 229 RPEFRSFPPDGEQRFYINLFGEETLGVALAIPGTPWRLFAEIPEAEATELSTQAGITFTF 288 Query: 143 ATLLIALSISALSNFMLPYAVFLSFF-PVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 + ++ + + N++L VF + A + H L + LA F Sbjct: 289 SLIIFGVVMVLAVNYLLNRFVFRTLEELQQGAERIGSGDLSHPLPVPPEQELAQVAQSFN 348 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + L N +I A I E + + R AE + AKS FLA+MSHELR Sbjct: 349 TMMHQLRTRNTEIARQTANLKAEIQERRRVEQELIKARDAAEAASRAKSTFLATMSHELR 408 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL AI+G+S+++E + + + +G I +G HLL LIN+ILD+S+IEAGR + Sbjct: 409 TPLTAIIGYSQLLEQLVSKGIYDTVAHD-VGRIRAAGTHLLALINDILDISKIEAGRMTV 467 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S + D+VR + + + ++ + P + + +D +RQ ++NLLSNA K Sbjct: 468 SVEYADVADLVRSAVNTIIPQIEKNRNRLHVHCPPDIGILNSDATKVRQALINLLSNAAK 527 Query: 382 FTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V +TV Q + D G GI + + +F Q + G Sbjct: 528 FT-EDGEVTLTVSRYQKDHQTWFRFVVADTGIGIPADKHDKLFKAFSQVDDSPTRKYGGT 586 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL ++Q + GG+ + S + G +P Sbjct: 587 GLGLALSQRLCELIGGRITMESAVGVGSTFTMEIP 621 >gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] Length = 423 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 16/264 (6%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L E+ +I + + + RK F++++SHELRTPL +I G++E Sbjct: 165 TLEQNNERYIIILHDVTQERILENARK----------EFISNVSHELRTPLTSIHGYAEA 214 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + + E + ++ I + LIN++LDL ++E+G + I+ +I+ Sbjct: 215 LLEDNLD--DKELIRRFLTIIESEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILE 272 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT--AIGGRVHV 391 +++ ++ N+++ P + D+ + Q++LNL+ NAVK+T G V Sbjct: 273 HVRNIIEPLTKDYNVDVEFV-SPDKIELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKV 331 Query: 392 TVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V + + +KD G GI E + F + A G GLGL I ++I+ Sbjct: 332 LVEAYKDNNHVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVE 391 Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474 H G SK G + I LP Sbjct: 392 KHNGTIEFTSKEGVGTKFIVTLPV 415 >gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] Length = 555 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 6/241 (2%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R +AE + K+ FLA+MSHE+RTP+N I+G E++E + + YI I Sbjct: 165 LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQTPLDT----QQQHYIKSI 220 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S +HLL ++N+ILDLS++E+G+ + L + ++ A++ ++E+ Sbjct: 221 KTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFLATAKDNSVELTFDY 280 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGI 412 +L V D +RQ+++NL++NA+KFT G+V + + Q ++ D G GI Sbjct: 281 PDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKFNVIDTGVGI 340 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + ++ Q G GLGL + +++ GG + S+ +G L Sbjct: 341 KPESLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEKNKGSTFTLSL 400 Query: 473 P 473 P Sbjct: 401 P 401 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GG + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGHITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] Length = 752 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 18/348 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L A +++ + A++ S+ ++A L L Sbjct: 276 AFLVPAEYVAVNTQKLVNIVMAVIVGFATVFSIMAVIAGWFLLREKQQRELQAEKKTNLR 335 Query: 217 CQAEKDDLI---AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + L E+ A+ + E + AE + AK+ FL++MSH++RTP+NAI+G + + Sbjct: 336 LEQYNVQLTQANDEMRRAQDAAAEALQSAERASKAKTDFLSNMSHDIRTPMNAIIGITAL 395 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ E E E++G + SGQ LL +IN ILD+SRIE+G+ L ++L + Sbjct: 396 MKNEL---HEPEKLAEHLGKLESSGQLLLGIINNILDMSRIESGKTTLHVEKMNLPQQIS 452 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + +++ +A +++ + +V AD + QV++N+LSNAVK+T GG + + V Sbjct: 453 QLDSIIRQQAGQRSQSFTVSTNLQHENVLADPNRLNQVLMNILSNAVKYTPTGGHIRLEV 512 Query: 394 GWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 Y ++D+G G++ T+ F + + + QG GLG+ I +S++ Sbjct: 513 EELPRNEHYARYRFVVQDDGIGMSADYQKTLFDPFTREERSGTNKVQGTGLGMAITKSVI 572 Query: 450 ANHGGQFLIRSKLREGVEVIAIL--PNT------RVLNFIPEDNHEST 489 GG + S +G +L P + +PE+ ++ Sbjct: 573 DLMGGSISVESATGKGTRFEVVLEFPIDTEADTVQKAQALPEEEETTS 620 >gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 498 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 148/330 (44%), Gaps = 6/330 (1%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + ++ + A + V V ++ L L+ ++ L + Sbjct: 160 VVGAVLVSAALQSIDANLRALQGVSVYSLLGGLLLATGLSWLLSRSISRPLLKMNKVARA 219 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTP 263 + + + D++ + +LS E + + + + F+AS+SHELRTP Sbjct: 220 MAQGDYTNRIDMTRHDEIGMLAQSLNTLSKELNDKINLLRQIDETRRDFVASVSHELRTP 279 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L I G++E + E + E +EY+ I L L+N++LDL +IE G+ +L++ Sbjct: 280 LTIIQGYTEALLDEVV--ETPEKKEEYLHSILEETLRLRRLVNDLLDLRQIETGQVKLNK 337 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 A+ L D+ + ++ +EK +++ + D + QV++NL+ NA++ T Sbjct: 338 QAVDLADLFSAVLQKMEGLFREKQVDLKLALPEKPVVAEVDPDRIGQVLINLVDNALRAT 397 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GGR+ V + S + + D+GPGI + E + F + + + G GLGL Sbjct: 398 PGGGRILVKL-MVSDNEITVKVTDSGPGIPKEEQKLIWHKFYKIDKSRSRSGGGTGLGLA 456 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I + ++ HGG+ + S+ +G LP Sbjct: 457 IVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486 >gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] Length = 921 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 19/304 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L N ++ E + ELE K +E ++ + + KS FLA+MSHELRTP Sbjct: 474 SEELRMINEQLEERTKEAEKRAQELEKTKHQLEEKAEQLIQSSQYKSEFLANMSHELRTP 533 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ E+ E KE+ IH SG LLNLIN+ILDLS++EAG+ E+ Sbjct: 534 LNSILLLSEMLADESEEGNLTEEQKEFARVIHSSGSDLLNLINDILDLSKVEAGKMEIVI 593 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + ++ A++K +E+ +D ++ ++ D++ +Q++ NLLSNAVKF Sbjct: 594 EETNTRELPVYVGNQFAYLAEQKGLELKIDVDDNVPDLIYTDQRRFQQIVKNLLSNAVKF 653 Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 T G V + S ++++D G GI E + + +F QG Sbjct: 654 T-ENGSVTFRMRKVSAETAGKYVKTEGADFWLEVAVQDTGIGIPEKKQDLIFEAFQQGDG 712 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR----VLNFIPEDN 485 A G GLGL I + GG + S + +G I +P+ +P Sbjct: 713 ATGRKYGGTGLGLSICREFARLLGGTICLDSTVGKGSTFILYIPSLPNGMTATEEVPASE 772 Query: 486 HEST 489 E+ Sbjct: 773 SEAA 776 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1058 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 94/254 (37%), Positives = 149/254 (58%), Gaps = 8/254 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ + E +++AE N AKSRF+A+MSHELRTPLNAILGFS+++ T P Sbjct: 577 LEKQVIQRTAELAEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRSTTLP-- 634 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++E I I+RSG++LL LIN IL L++IEAG+ L+ S L ++ E + L A Sbjct: 635 -PEHQENIQIINRSGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAA 693 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--G 400 ++KN+ + + D ++ + DE +R+V++NLLSNA+KFT G + V V S + Sbjct: 694 KKKNLNLTFERDKTIPQYIRTDEVKLREVLINLLSNAIKFTPR-GDILVDVQTLSQKPIT 752 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++KD G GI E+ + +F Q + K++++G GLGL I++ + GG+ + S Sbjct: 753 LLFTVKDTGVGITPEELDILFDAFSQT-QSGKNSQEGTGLGLAISRQFVELMGGELTVDS 811 Query: 461 KLREGVEVIAILPN 474 ++ G LP Sbjct: 812 QIAVGTIFRFTLPV 825 >gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] Length = 590 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + + ++++ I Q Sbjct: 355 ELKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAM--EDPQLRQQFLSIILTESQR 412 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + +LI ++LDLS++E ++LS ++ L ++ E +L RA EK I + P + Sbjct: 413 MESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAW 472 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + + QV +NL+ NA+ +T GG VHV++ + ++D G GI EI + Sbjct: 473 IDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEE-TITVHVQDTGIGIDSDEISRI 531 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ H G+ ++S++ +G L Sbjct: 532 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKL 583 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] Length = 1508 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 10/271 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L +S + + L+ ++ + + R+ AE + AKS FLA+MSHE+RTP+NA Sbjct: 842 LLRSLADQVGIALAQAKLLEGEKLQREELEIARQEAELASQAKSAFLANMSHEIRTPMNA 901 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG + ++ + N +++ I SG LL LINEILDLS++EAG L Sbjct: 902 VLGMTGLLLETNL----NREQRDFAETIRISGDALLCLINEILDLSKLEAGEMFLETLDF 957 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L V E + +L +A ++ +EI + D +RQ+++NL+ NA+KFT+ Sbjct: 958 DLSTCVEEVLELLAPQAHKQELEIAGLIHRNVPVHLQGDASRLRQILMNLVGNAIKFTST 1017 Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + V S + S+ D G GI+ + + F Q +I G GLG Sbjct: 1018 -GEIVVRAELLSQTPNTVTIHFSVTDTGIGISSEDQNKLFQPFTQVDASITRKYGGTGLG 1076 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I+Q +++ GG + S+L +G + L Sbjct: 1077 LAISQQLVSLMGGTIGVNSQLGKGSQFWFKL 1107 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 11/274 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + I + + A+ ++++ AE N AKS FLA+MSHE+RTPLN ILG ++++ Sbjct: 563 RVQISLDIGQRKQAEEALRQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT 622 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 N+ KEY+ RS L L+++ILD+SRIEAGR ++ E+ + + Sbjct: 623 ----DPNDEQKEYLLGAIRSTNRLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISE 678 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393 + + A+ K + + + + +L + DE +RQ++ NL+ NA+KFT G + + Sbjct: 679 LFDMEARGKGLLLEFRWNDNLPLRLIGDEVRLRQILFNLVGNAIKFTEK-GTIRIDACLL 737 Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S +++ D G GI+E + + F Q + QG GLGL I + ++ Sbjct: 738 PRASDSSVRVLVTVGDTGIGISEEHLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKL 797 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G I S EG LP + Sbjct: 798 LDGDISIDSTPGEGSTFYLSLPFKLPATSQKTEE 831 >gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] Length = 993 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 14/275 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + +N L A + A +++ E A+ N AKS FLA+MSHE+RT Sbjct: 295 LINLVEDANRARNELMNANRKLEASIARANTMASE----ADAANKAKSEFLANMSHEIRT 350 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ++G SE++ T+ ++ K++ I+ SG++LL+L+N+ILD S+IEA + E+ Sbjct: 351 PMNGVIGMSELLLRSTL----DKEQKKFAETINASGKNLLHLLNDILDFSKIEADKLEIE 406 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 E +L+D++ E I M +A +K + D + + D ++Q+++NL+SNA+K Sbjct: 407 EIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLLLRGDPGRIKQILVNLISNAIK 466 Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + V V ++ D G GI E + + F Q + G Sbjct: 467 FTDE-GEILVNVELEEDFGDNARIRFTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGG 525 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I+ + N GG+ +RS +G + Sbjct: 526 TGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSI 560 >gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 785 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 8/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + +V + + R+ A +KSRFLA+MSHE+RTPL+ ILG +E++E + + Sbjct: 116 ITDQKVTEEHLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----D 171 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ I SG+ LL LIN+ILD S+IEAG+ + L ++V + + M+ L+A Sbjct: 172 EEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAH 231 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 +K++E+ I + V D +RQ+++NL +NAVKFT G RV + Sbjct: 232 KKHLEVVVDIGEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAW 291 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G GI E + + F Q + G GLGL I++S++ G+ +RS Sbjct: 292 VAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRS 351 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + EG +LP V ++ P Sbjct: 352 REGEGSSFWFLLPLPIVESYEP 373 >gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 591 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + + +++ I + Sbjct: 354 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--EDKQALNDFLSIILKESDR 411 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS+IE + LS + L D++ + + +++ +A EK I + D Sbjct: 412 LQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVY 471 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D ++QV +N++SNA+ +T G ++++ T I+D G GI EIP + Sbjct: 472 IEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKTGSTVLT-EIRDTGIGIEASEIPRI 530 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G ++S++ +G I LP Sbjct: 531 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELPK 584 >gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1209 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 22/295 (7%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + ++ + + + EL V E ++A E + AKS FLA+MSHE+RTP+NA Sbjct: 507 LAQDVTALMEKEQDLEQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNA 566 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +E+ + P KEY+ I S + LL L+N+ILD S+IEAG+ +L Sbjct: 567 IMGMTELAGNTELTP----EQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDF 622 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 SL + V + + + A +K +E+ +++P + D +RQV++NL+ NA+KFT Sbjct: 623 SLRETVHNAVYSVAMLAHQKGVELVVRVEPDMEDGFKGDPDRLRQVLVNLVGNAIKFTQQ 682 Query: 386 GGRVHVTVGWTSGRG----------------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 G V V V + + D G GIA + + +F Q Sbjct: 683 -GEVQVEVRLAAAEEMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADG 741 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + + G GLGL I+ ++ G+ ++S+ G +LP + E Sbjct: 742 SSRRKYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLPLEPGEDAQKEQ 796 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 211/475 (44%), Gaps = 25/475 (5%) Query: 6 KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65 + + V + L ++ + R++ +SLF +S + + + A I Sbjct: 4 ERRAIGVSAVSQEAR----LARKTEEEVTRDLAVTFRDSLFPISICIAVLFAIFAAI-HP 58 Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 F P +W + +A ++ + I Y ++ + + Sbjct: 59 FILPPELRLWMVGVALSGSAASAI-IAFLAGRNLIAAPYAPVAGFVLVAFCLLNSTAHMY 117 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L + Y + + L + +F+L V+ + L + Sbjct: 118 LTGDENQSTNYGLLLVAMGLFFLSRLYLALSFVLILGVWAGTAHFMGGL------NGEGF 171 Query: 186 DISLAGMLATALSFFTY-ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-- 242 + L ++ I +++ + + AE++ +A+ + R Sbjct: 172 HFAFMMFLGMVIAILAQEIRVRIYRRVISMREEAAERERSLAQA--------LAKTRLYA 223 Query: 243 --EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E EN AK+ FLA+MSHELRTPLNAILGFSE +++E GPL + Y EY+ DIH +G H Sbjct: 224 SMERENKAKTEFLANMSHELRTPLNAILGFSEAMQMELFGPLGHPRYVEYMHDIHHAGTH 283 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL+L+N+ILDLSRIE L+ I + C+ +++ RA+ +++ + P Sbjct: 284 LLSLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLIFECAPPFPE 343 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V DE+ ++QV++NLLSNAVKFT GG V + V G I I+D G G++E E+ Sbjct: 344 VETDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAPDGGGIIRIRDTGIGMSETEVEQA 403 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L F Q + + +G GLGL + ++ GG I S+ G V LP + Sbjct: 404 LRPFWQADAGLDRSFEGAGLGLALVSELLQLMGGSITIESERGAGTLVTVGLPPS 458 >gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 704 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 127/418 (30%), Positives = 193/418 (46%), Gaps = 18/418 (4%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + Y A + + +Y + + + + PGT T Sbjct: 289 LFLVAPAYYAFICYLFREGRVVWVDKLIYGVSAVFCLFALL------VAPFMAPGTVTLL 342 Query: 136 YLTIYKSATLLIALSISALSNFMLPY---AVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 ++ +I L++ L A + ++ A+ A + + I A M Sbjct: 343 REP-FQLLWAVIILAVGVTILRTLLMEKEARRDALAVLLAAMVYFAYEVLTSMKIIGASM 401 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEE 245 + L H+ +K + E+D L L A ++ + AE+ Sbjct: 402 ELSNLLIVFVTMLHIRAFMLKYRRVEGERDTLHRTLRDANAVLEARADELTRALMAAEQA 461 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +LAKS FLA+MSHELRTPLNAI+GFSE ++LE GPL + Y EY DI+ SG HLL+L+ Sbjct: 462 SLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLGHGKYAEYAKDINNSGTHLLDLV 521 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++ILD+SR+E+G L+E + + + R + +A + + D L V+ADE Sbjct: 522 SDILDISRVESGTDALNEEEVCIESVARAVLAATAAQAGKAEVVCRLDADAGLPPVFADE 581 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + +RQ++ NL+ NA+KF GG V VT+ I++ D G GI +IP L FG Sbjct: 582 RKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGY-RIAVADTGIGIVAEDIPKALARFG 640 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q + +G+GLGLPI Q + HGG F I S G V LP R L P+ Sbjct: 641 QLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGRGTTVTITLPRERCLPSAPD 698 >gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 1205 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 8/341 (2%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 +I + + A P + + ++ Sbjct: 456 VIHDAREVVMRAAALTAELGVPVPAGFETFVAKARIRVPDEGEWTYIRKDGTRLPVLLSV 515 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + L+ I E ++ +++AE N AK FLA+MSHE+RTP+N Sbjct: 516 TGLTNAEGALTGFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+G S ++ + + ++ + I SG+ L+++I +ILD S+IEA R +L E Sbjct: 576 GIIGMSGLLLETKL----ESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEET 631 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 SL ++ + +L + Q K + + +DP + S+ D +RQ++ NL+ NA KFT Sbjct: 632 FSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTD 691 Query: 385 IGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + V G ++ D G G+ +I + F Q + G GLG Sbjct: 692 EGEVNLFISVARGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLG 751 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 L I++ ++ GG + S +G LP P Sbjct: 752 LVISKRLVEMMGGAIHVESTPGKGSRFFFRLPARHSAPEEP 792 >gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1187 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 10/286 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 Y+ Y F + I+ EL+ + E R AE N AKS FLA+MSHE+R Sbjct: 436 YLIYSAFVFILAIILLAYTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSHEIR 495 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI+G S ++ + K YI +HRS + LL L+N+ILD S++EAG+ EL Sbjct: 496 TPMNAIIGMSHLVLESELNKH----QKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLEL 551 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + SL +++ + I +L +++Q+K++++ +D +L + D ++Q+ILNL NA+ Sbjct: 552 ERTPFSLDELLDQAIDILSVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAI 611 Query: 381 KFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G+V + + QY + ++D G G+ G++ + SF Q + Sbjct: 612 KFTHQ-GKVTLRLNLLHKTKQYSTLELVVEDEGIGMTPGQLNKLFNSFSQADTSTTRKYG 670 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I ++I+ G + S L +G +P Sbjct: 671 GSGLGLAITKNIIDLMKGTISVTSTLGKGSTFKVQFELEYCNEDVP 716 >gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 742 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A + ++ AE N KS FLA++SHELRTPLN+I+GFS+++ + G L NE Sbjct: 480 KKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGEL-NEKQL 538 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y G+I +SG+HLL+LIN+ILDLS++EAG+ EL + L + +L A K+I Sbjct: 539 RYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAPIADRKSI 598 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 +I ++D L++++ADE Q++ NL+ NA+KF + V+V G I++ D Sbjct: 599 QIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVGARM-KGDKVEITVTDI 657 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F Q QG GLGL + + I+ H G RS EG Sbjct: 658 GAGIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRSVPGEGSTF 717 Query: 469 IAILP 473 +P Sbjct: 718 AFAIP 722 >gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980] gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1464 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 14/264 (5%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E D + E E + L++E A+E + KS+FLA+MSHE+RTP+ ++G +E++ + Sbjct: 706 ENDLQMQERENTRLLANEA--AAKEASRLKSQFLANMSHEIRTPIAGVIGMAELLTDMNL 763 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E +E +I RS LL +IN+ILD S++E+GR ++ E SL +VR+ ML Sbjct: 764 ----DEEQQECAENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVVRDVSKML 819 Query: 340 QLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 A+ KN+ I V D +RQ+I NLL+N++KFT+ GRV +V Sbjct: 820 GFAAERKNLMFDSDITVGVDKDLIVMGDPGRVRQIITNLLTNSIKFTSE-GRVKFSVIKE 878 Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 I +K D G GI E + F Q + G GLGL I+++++ Sbjct: 879 REDADTIEVKFVVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLM 938 Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476 G+ + S L +G +P + Sbjct: 939 HGRITLESSLGQGTTATFWIPFNK 962 >gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 727 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 19/322 (5%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + + G++ + +L E A+ + Sbjct: 256 LGIFPIPATNGGIIGVLTLESRNLEQLQAYPQRDMLYAACRTLGTAIERAQAQDRLRQIN 315 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + E + KS FLASMSHELRTPLN+ILGFS++++ + G L N ++ I +SGQ Sbjct: 316 EDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGEL-NHRQINHVKLIEKSGQ 374 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+ILDLS+IEAG+ EL+ A+ + + EC+ M+Q RA +K + + ++D L+ Sbjct: 375 HLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRADKKRLALSLELDYRLN 434 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------------------GQ 401 V DE+ +RQ+I+NLLSNAVKFT G + ++ G Sbjct: 435 QVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGDYRPDCSPVNASTPYL 494 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D+G GI E + F Q ++ +G GLGL + + + HGG ++S Sbjct: 495 CLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTKRLAELHGGTVSLQSD 554 Query: 462 LREGVEVIAILPNTRVLNFIPE 483 + +G LP T + + E Sbjct: 555 VNQGSRFRVWLPLTEMRQTLAE 576 >gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 932 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + N I AE + + +E+ D RK A + + KS FLA+ SH Sbjct: 220 LAAKLKGAQDNLNYSIEQTTAELRETLETVEIQNIELDIARKGAIQASKVKSEFLANTSH 279 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ILGFSE+++ + PL ++Y+ I+ S + LL +IN+ILD SR+E G+ Sbjct: 280 EIRTPLNGILGFSELLKKTELNPL----QEDYLETIYESAKGLLTIINDILDFSRLETGK 335 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L + L ++ E + + A EK + + +D + + D ++QV+ NLLS Sbjct: 336 LTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIVDHDIPEHLLGDPLRLKQVLTNLLS 395 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT + G + ++V I D+G G+ + + + +F Q + Sbjct: 396 NAIKFTNV-GHILISVSKEDRADNQITLQFRITDSGIGLNQDQQEKLFDAFTQLDASDSR 454 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL IA+ ++ G+ + S+ +G Sbjct: 455 THGGTGLGLAIAKGLVDRMHGEIGVESEPGKGATFWFT 492 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 129/257 (50%), Gaps = 11/257 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + +++ + +AE N AKS FLA+MSHE+RTPLN ILG ++++ N Sbjct: 664 INERKRSQADLLSAKLQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTT----EPN 719 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ RS + L L+++ILD+SRIEAGR ++ E+ + + + AQ Sbjct: 720 EEQNEYLTGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYTEAQ 779 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K + + D L +V DE +RQ++ NL+ NA+KFT G V V V Sbjct: 780 GKGLVLDFIWDDELPTVLIGDEARLRQILFNLVGNAIKFTDK-GEVLVEVSLLPNSNFSS 838 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GI E + + F Q I+ QG GLGL I + +++ GG I Sbjct: 839 VRVLFTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDISI 898 Query: 459 RSKLREGVEVIAILPNT 475 S L EG V LP Sbjct: 899 DSALGEGTTVYLSLPLK 915 >gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina NCIMB 400] gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 952 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 I +LI + + F L V P+ + A + LD L G L Sbjct: 202 HRAAIAAFIIVLIGVQFNLFFTFRLVKHVNY---PITEMVRVVAKIREGKLDTRLEGNLI 258 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 259 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDIAKKRALEAS 318 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 319 RIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHT----SQLDYIKTIERSASNLLGIIN 374 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + +L + + E + ++ AQEK +E+ ID ++ V D Sbjct: 375 DILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSAQEKGLELVIDIDANVPESVSGDA 434 Query: 366 KGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G + + + + + D G GI E + + Sbjct: 435 MRVSQIITNLVGNAIKFTDKGSVILKIHLVGQDEDNITLRCEVIDTGIGIDESQQEYLFQ 494 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G ILP Sbjct: 495 AFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGFTSAPNKGSNFWFILPL 546 >gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740] gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes] Length = 538 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 11/267 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A++ KRAEE + K FLA+MSHE+RTPLN I+GF ++ E + N+ +E Sbjct: 254 RAQNALRVALKRAEEADRVKGVFLANMSHEMRTPLNGIIGFGRLLLEENL----NQEQRE 309 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I +SG+HLL +IN+ILDLS+IE+G++EL + L + +R +++A+EK ++ Sbjct: 310 YVEIIDKSGEHLLGIINDILDLSKIESGKFELESLPMKLSEELRAVADFCEVKAREKGVK 369 Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----S 404 + + + D ++QV NLL NA+KFT GG V + V R + I S Sbjct: 370 LLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEGGEVRLGVEVLEEREEAIALDFS 429 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIA + + F Q + G GLGL I+Q ++ GG+ +S+ + Sbjct: 430 VSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGLSISQELVRLMGGEMRCQSEEGK 489 Query: 465 GVE--VIAILPNTRVLNFIPEDNHEST 489 G LP + L + + Sbjct: 490 GSRFSFTLTLPKAKGLTQAEREIPKEA 516 >gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] Length = 931 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 145/279 (51%), Gaps = 8/279 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 239 AMAISLSEYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + ++ +E ++Y+ I RS +LL +IN+ILD S++EAG Sbjct: 299 HELRTPLNGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAG 354 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L D + E + +L A EK +EI KID + S + D ++QV+ NL+ Sbjct: 355 KLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLV 414 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + V + + ++D G GI+E + + +F Q +I Sbjct: 415 GNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISR 474 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q +++ GG+ + S+L +G + Sbjct: 475 RYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTI 513 >gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 577 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 16/287 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++++ A++ ++ AEE + KS FLAS +HELRTP Sbjct: 276 HRSWSPAEIELVQELADQVGTAIAHATLYQELEQATHAAEEASRLKSEFLASTTHELRTP 335 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN I+GF ++I ++E +E++ + H+S HLLNLIN+ILDL++IEAG+ L Sbjct: 336 LNGIIGFLKLILDGM--ADDSEEQQEFLEEAHKSALHLLNLINDILDLAKIEAGKMVLEL 393 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVK 381 + L +++ +A++K + K + +++ + + + QV+LNL+ NA+K Sbjct: 394 EPVDLEELLTAVNNFTAPQAEQKGLTFKIKKPQTHTPITLYGNYQRLLQVMLNLVGNAIK 453 Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 FT GG + V+ IS+ D G G++ + + F Q + Sbjct: 454 FTHEGG-IVVSAEIVKKKILCHEQEFPGIVKISVADTGIGVSLEQQAKLFEKFVQIDGSR 512 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477 A G GLGL I+Q ++ GGQ S G V P V Sbjct: 513 TKAYGGTGLGLAISQKLVQAMGGQIDFYSMGEGLGATVTFTTPLQEV 559 >gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 748 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 15/282 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ +LE + + AE+ N AKS FLA+MSHE+RTPLNA++GFSE+++ Sbjct: 409 NLEEKVEERTKKLEKTNTELKYAKIEAEKANEAKSEFLANMSHEIRTPLNAVIGFSELLK 468 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E +K YI I+ +G LL +IN+ILDLS+IEAGR EL + L +I RE Sbjct: 469 NTI----KDEKHKSYIETINVAGNSLLTIINDILDLSKIEAGRIELQYKPLKLSNIFREI 524 Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + + + KNIE I S+ DE +RQ++LNL+ NAVKFT G V +++ Sbjct: 525 KYIFKQKTKSKNIEFLLDIQEDFDESILLDEVRIRQILLNLVGNAVKFTDK-GYVKLSLK 583 Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 T+ + + ISI+D G GIAEGE + +F Q S G GLGL I + + Sbjct: 584 GTTSQNKSSVDFRISIEDTGIGIAEGEREKIFDAFKQASGQSIKKFGGTGLGLSITKKLT 643 Query: 450 ANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIPEDNHES 488 G+ + S +G P +PED + Sbjct: 644 EIMQGKIFVESIEGKGSTFYVEFYNVPIA-ATEELPEDTSTA 684 >gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1819 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 13/330 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + L T I+ V I L + F+ + + + + + E+D + +L+ Sbjct: 1073 MAAYLGTPIIVGNEVYGILAFYSLKPRRTAFSSSDHEFLRLMAQWIGAEIERDRYLKQLQ 1132 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 R +A E + KS FLA+MSHE+RTPLNA++G SE++ + NE + Sbjct: 1133 RISDELALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPL----NEEQAD 1188 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I SG+ LL++IN+ILD S+IEAGR L L+ +V I M Q+KN+ Sbjct: 1189 FARIIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLH 1248 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK- 406 +F I P + V D +RQV++NL+ N VKFT G V +++ + ++ Sbjct: 1249 LFGWIAPDVPNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEV 1308 Query: 407 -DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G++E + T F Q ++ G GLGL I++S++ GG+ + S +G Sbjct: 1309 HDTGIGLSETARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQG 1368 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + L+ PE S +++ +A Sbjct: 1369 STFWFTV----TLSVRPE-QPASVEWEAFA 1393 >gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/441 (22%), Positives = 185/441 (41%), Gaps = 29/441 (6%) Query: 55 FVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLL 111 LL A + + S+ + + + + +L Sbjct: 220 VGLLAACFDGMLFKLLPEHVALQSVSIYILMYVHCLTAIQFSRHFLHAPQYFPRLDTYLR 279 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + + C + L+ W +L++ L+ + + Y + + + Sbjct: 280 LMMLICVGCLLSVPLIGFAAWNILASVTVSLVSLILLLTGIYVWRRGVRYGSYYTLAWAI 339 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + + + + L AT + + L + + Sbjct: 340 LLFAFIQATTGSLGLEVLGVFGATVVKIGV------------TIELITLSIGLADRINLL 387 Query: 232 KSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 K ++R+ AE+ + AKSRFLA MSHE+RTPLN +LG +++ M + + + Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPM----DRSQR 443 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I SG L+ +IN+ILD +RIE+G+ L + L D++ E + + +A +K + Sbjct: 444 FYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRL 503 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403 ++ ++ + + D ++QV++NLLSNA+KFTA G V V+V S Sbjct: 504 RLYVSLENGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHGKPHLVF 562 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D+G GI+E + + SF QG + G GLGL I++ ++ GG+ ++S L Sbjct: 563 AVSDSGIGISEQALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTLG 622 Query: 464 EGVEVIAILPNTRVLNFIPED 484 +G +P P++ Sbjct: 623 QGTRFAFDIPL-LNEQDAPDE 642 >gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 914 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 174/455 (38%), Gaps = 42/455 (9%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 + L + F + P + + +L L + + + Sbjct: 191 VLLALFCCQLFLFLFLREPSQGWYLVYSLNSILLALGFDGYLFQWPPGLQH-------IT 243 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 V + T L P+Y + L L + A+ + Sbjct: 244 VLLLIFSFWLTATQLTRHFLNIPQYFPLLDRILRLWMLGLGAVLLAAPLIGLSAWTTLAH 303 Query: 172 VALSTQAIMSM----------------HVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 A A++ H+ +L + +F L + + Sbjct: 304 FATLIGALLLPSCGAHVWRKNLRAGAYHLTAWALLLVSLGGQAFAELGLDLLGEHATMLA 363 Query: 216 SCQAEKDDLI------AELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNA 266 + LI + + + + AEE N AKSRFLA MSHE+RTPLN Sbjct: 364 KIGIASNLLILAVGLADRFQQLRREGLYSHRAAEEALLQNQAKSRFLAKMSHEIRTPLNG 423 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG ++++ + + + Y+ I SG L+ +IN+ILD +RIE+G+ L Sbjct: 424 VLGMLQLLKETRLDH----SQRFYVDTIASSGSTLMAVINDILDYARIESGKLSLEHIEF 479 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L +++ + + + +A EK + + +D + + D ++QV+ NLLSNA+KFT+ Sbjct: 480 DLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPRHIQGDPTRLKQVLTNLLSNALKFTSE 539 Query: 386 GGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G+V + V Y + D+G GI + + SF QG + G GLG Sbjct: 540 -GQVRLDVSRRRKSDGSEHLYFGVSDSGIGIRQEAQARLFESFSQGDSSTTRRYGGSGLG 598 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 L I++ ++ GG ++S G LP R Sbjct: 599 LAISKELVEMMGGHIEVQSTPGLGSRFTFNLPLQR 633 >gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 919 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISGVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLTIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + + + +L + +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +QVI NL+ NA+KFT G + V S I + +D G GI E + + +F Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQTRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516 >gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586] gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586] Length = 927 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 162/351 (46%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + F L + V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDALKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L DI+ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V S R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 643 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 185/437 (42%), Gaps = 9/437 (2%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + ++ + + + + W + A ++G + + Sbjct: 140 TIAASVIAVLGAFAVALSGYLPVGSLALAWPNAVVMPVFAVTAIGHIAAQAMEHMRREGE 199 Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 WR + + L + + LV L SA + S L L V Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--- 221 + P ++ + + L + + Y +++ Sbjct: 260 IGDRPALLQAISDVAAHGMPATVPFRLHLDAPRADGSRTIYAEMRAHRIEAGLAGANGST 319 Query: 222 ----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E D R AE + K+ FLA++SHELRTPLNAI+GFS+V+ E Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGE 379 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L+ E +EY G I +SG+HLL+++N +LD+SRI G ++ + + ++R C Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCD 439 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +++L+A I + P+ ++ AD + RQ+++NL+SNAVKFT GGRV V V Sbjct: 440 LMRLKADASGIALVSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G + + DNG GI E ++P + F Q + +G GLGL + + + HGG Sbjct: 499 GAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 458 IRSKLREGVEVIAILPN 474 + S +G V LP Sbjct: 559 VESAPGKGTAVTVTLPL 575 Score = 41.0 bits (95), Expect = 0.40, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 18/191 (9%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV-WRIWLLV 112 + +A P + +W + + A ++ + + + + W L Sbjct: 39 FLISRLATGAVMMAGLPPYLVWRGVPSGIEALAIASLFLPLVAAVILSRTGSLWIAHALS 98 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G+ L L + + +I+ S A + + + Sbjct: 99 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMISGSRRATIAASVIAVLGAFAVALSG 158 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231 L ++ + + TA+ + + E E A Sbjct: 159 YLPVGSLALAWPNAVVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202 Query: 232 KSLSDETRKRA 242 + +E R R Sbjct: 203 RMQDNEARDRL 213 >gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa HTCC2155] gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa HTCC2155] Length = 1182 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 14/253 (5%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + S E ++ AE N AKS FLA+MSHE+RTP+NAI+G +++ + + E ++EY Sbjct: 539 SNKQSQELKEEAEAANTAKSEFLANMSHEIRTPMNAIIGLAQL----GLKDKSGEKHEEY 594 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +S ++LL +IN+ILD S+IEAG+ + + L +++ + L+ R +N+++ Sbjct: 595 LYKIKQSSENLLTIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGGTLRGRMTNRNVDL 654 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 S V D + QV+LNLL NA+K+T G V ++V + S++ Sbjct: 655 IFPGPLSYKLV-GDPLRLEQVLLNLLGNALKYTRK-GHVILSVDEKELKEDSICLQFSVE 712 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G+++ + + F QG + G GLGL I++ I+ GG+ + S +G Sbjct: 713 DTGIGLSDTQRNRLFQPFAQGDTSTTRKYGGTGLGLSISKKIVKYMGGEIWLDSMPHKGS 772 Query: 467 EVIAI----LPNT 475 +P Sbjct: 773 VFCFTANFEIPLE 785 >gi|16330815|ref|NP_441543.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1653308|dbj|BAA18223.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 674 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 157/366 (42%), Gaps = 25/366 (6%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + +L+ L +AL + P+++ +S + + L Sbjct: 307 FTRMLVLVGLVSTALLLIAVYLLSIKITKPILLITKAAIDISSGDREARAPVLGEDELGI 366 Query: 200 FT----YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-RKRAEEEN-------- 246 +T L +SN + E + +L VA S +E ++R EE Sbjct: 367 LAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKALEL 426 Query: 247 ---------LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 KS FLA+MSHELRTPLNAI+G+SE++ E L++E + I RS Sbjct: 427 ASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAED-LDSEELVPDLDKILRS 485 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ LL LIN++LD+S+IEAG+ EL +L +++ + + + N ++ +I Sbjct: 486 GKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLE 545 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V+ D +RQ ILNLLSNA KFT G + +KD G G+ E Sbjct: 546 SEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEE 605 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + F Q + G GLGL I + GG + S++ G LP Sbjct: 606 QMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLPKY 665 Query: 476 RVLNFI 481 LN Sbjct: 666 AQLNSA 671 >gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 763 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 12/328 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P+ V + + + + I + ++ I+E Sbjct: 199 LPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITSYCSIIQDISE 258 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + A+ + ++ AE N AK+ FLA+MSHE+RTPLNAI+G + + ++ Sbjct: 259 HKQAEENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMTSL----SLLSNPEPDQ 314 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 KE + I +G LL++I+ ILD S+IEAG+ + + +L +++ + I + + RAQEK Sbjct: 315 KENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTVEKINFNLHELIEKNITIHKARAQEKG 374 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYI- 403 + + IDP++ V D ++QV NL+ NA+KFT G V V + + Sbjct: 375 LLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAIKFT-DHGEVEVRLKLLDIFDDHIVLQ 433 Query: 404 -SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI G+ + SF QG +I G GLGL I++ I+ G+ + S + Sbjct: 434 ASVADTGRGITAGQQEKMFESFYQGDSSISRTYGGTGLGLNISKKIVEMMQGKIWLESDI 493 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490 G + + ES Q Sbjct: 494 ESGSTFYFT--VELGIPESSKLEAESNQ 519 >gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1105 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I E + A+ + +++AE N AKS FLA+MSHE+RTP+NA+LGFSE++ Sbjct: 594 QEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELLSELV--- 650 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N+ K Y+ I +G+ LL LI++ILDL++IEAGR ++ A++ +I E + L Sbjct: 651 -TNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQIFVL 709 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + +K ++ ID +L ++ DE +RQV+LNL+ NAVKFT G + + Sbjct: 710 KIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEK-GYIKLGAQKIDKMD 768 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 IS++D G GI + + +F Q G GLGL I + ++ G Sbjct: 769 KSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMMNGD 828 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + + +G L + ++ P +TQ Sbjct: 829 ISVTGTVGKGSIFNISL---QDVDISPTLVPANTQ 860 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 29/294 (9%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------ENLAKSRFLASMSHE 259 + + + +L +LE K L +E + + N+AKS+FLA+MSHE Sbjct: 118 LARIRIHLKLYNLTRKLEQQKQLLEE-KVKLRTVELLAAKEAAEAANIAKSQFLANMSHE 176 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+G+SE+++ E + + + IH +G HLL LIN+ILDLS+IE+G+ Sbjct: 177 LRTPLNAIIGYSEMLQEEAEDLAQEDLIPD-LKRIHGAGTHLLGLINDILDLSKIESGKV 235 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL +++ ++RE IIM++ ++ + +L + D +RQ + NLLSNA Sbjct: 236 ELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKVRQSLFNLLSNA 295 Query: 380 VKFTAIGGRVHVTVGWTSGR--------------GQYISIKDNGPGIAEGEIPTVLTSFG 425 KFT G++ + V + + D G GI+ + + F Sbjct: 296 CKFTKK-GKITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGISPERMEKLFQPFT 354 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 Q + G GLGL I + + GG + S++ +G +LP +L Sbjct: 355 QADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLPAEVLLP 408 >gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 470 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 155/343 (45%), Gaps = 17/343 (4%) Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----- 195 + + + + +A ++ + ++S V I +++ Sbjct: 137 VLTVGVPLVINGRIEGAIFMHAPLTEMNKTIINIFILMLLSGGVALIIGFVLISYTSSKI 196 Query: 196 --ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 L + + K N E+D++ + ++ E E+ + F+ Sbjct: 197 SQPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNVMAKE----LEQLEDMRKDFV 252 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A++SHELR+PL +I G+ + I G + E +Y+ + + + + LIN+ L++++ Sbjct: 253 ANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQKETRRMSRLINDFLEMTK 309 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 +E+G++ L+++ + +++R +I + R EK++ + + V AD+ + QV+ Sbjct: 310 LESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIADKDKIEQVLT 369 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL+ NA+KF+ G +H+ +I+IKDNG GI+ + + F + + Sbjct: 370 NLIDNAIKFSKEKGIIHI-FTEIKDDKAFITIKDNGIGISPEDQEHIWDRFYKADKS--R 426 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + G GLGL I + I+ H + + S+L +G LP + Sbjct: 427 GKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLPMKK 469 >gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] Length = 580 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 3/229 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHEL+TP+ +I GFSE + + + E E++ I + L Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTEFLSIILKESVRLET 409 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI ++LDLS+IE +++L+ + +I++E ++L +A EK I++ ++ V A Sbjct: 410 LIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYVMA 469 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D ++Q+ LNL++NA+ +T GG V ++ + D G G+ + EIP + Sbjct: 470 DPLRLKQIFLNLVNNALTYTPEGGSVTISARPRK-GAYEFDVADTGIGMKKSEIPRIFER 528 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + G GLGL I + ++ H G +RSK +G L Sbjct: 529 FYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSL 577 >gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 918 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++Q+I NL+ NA+KFT G + + V + + I+D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFT-ENGNIDILVEKRAQSNTKVQIEVQIRDTGIGIPERDQSRLF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1122 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 Y V+ L E L E ++ ++ R AE + +KS F+A+MSHE+RTP Sbjct: 679 PYRWRDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTP 738 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 + AILG+++++ + + E++ I R+G +LL +IN+ILDLS+IEAG+ E++ Sbjct: 739 MTAILGYADLVRD----MIEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNH 794 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 ++ + ++++RA+E + + + L + +D K ++Q+++NL+ NA+KF Sbjct: 795 EKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKF 854 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V + V + + +I I D G G+++ + + F QG ++ G GLGL Sbjct: 855 TQK-GWVQIRVRF--NKLLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGL 911 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ + GG + S G Sbjct: 912 AISKRLTEMLGGTIIASSTEGVGSTFTVS 940 >gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga lettingae TMO] gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga lettingae TMO] Length = 421 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 7/237 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E N + F++++SHELRTPL +I G++E + + ++ ET ++ I + Sbjct: 183 ELNEMRREFVSNVSHELRTPLTSIHGYAETLLNDP--DMDAETRDRFLKIIENESARMSR 240 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LDL R+E+G I L +V+ + + + + + ++++ + ++ Sbjct: 241 LINDLLDLERLESGEARFDFQKIDLCSVVKYVVSITEPLSIDYDVKVEYDCEE--VTIDG 298 Query: 364 DEKGMRQVILNLLSNAVKFT--AIGGRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTV 420 D+ + Q++LNL NAVK+T G V++ Q I + D GPG+ + + Sbjct: 299 DQDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGMPRDALNRI 358 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F + G GLGL I ++I+ H GQ + S+ G LP R+ Sbjct: 359 FDRFYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLPVERI 415 >gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 1003 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 11/248 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ AE + AK+ FL MSHELRTP+N I+G E++ + +E + YI Sbjct: 750 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTEL----DEDQQNYI 805 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + S LL+++NEILD S+IE G L+ I L ++ + + +A++K + + Sbjct: 806 HILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSLS 865 Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405 ++ V D +RQV++NL+SNA+KFT G + ++V T + Sbjct: 866 FINSANVPDVIIGDALRLRQVLVNLISNAIKFTHE-GSITMSVEGLRRTGTQEFTLAFQV 924 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GIA + TSF Q ++ G GLGL I++ ++ GG + S+ G Sbjct: 925 KDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENAG 984 Query: 466 VEVIAILP 473 +P Sbjct: 985 SSFYFTIP 992 >gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] Length = 648 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 90/293 (30%), Positives = 142/293 (48%), Gaps = 9/293 (3%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 LA ++ + T + + ++ A+LE + + Sbjct: 76 SALLAALIFYLICVAVLQTLRRRSMKLAEQQKKEQEQKYHAQLEEQNRKLELAVRHEAAA 135 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AK FL +MSH++RTP+NAI+GF+ + N E +Y+ I S QHLL+LI Sbjct: 136 NRAKREFLFNMSHDIRTPMNAIIGFTSLAATHV---DNKEQVLDYLKKISTSSQHLLSLI 192 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWAD 364 N++LD+SRIE+G+ ++ E A+ L D+V + ++Q K + +F +D + D Sbjct: 193 NDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISSKRLSLFIDTMDVVDEDIITD 252 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPT 419 + QV+LN+LSNA+KFT GG V + + G IKDNG GI + Sbjct: 253 PLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCGNYEFRIKDNGIGINKEFQKH 312 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + S QG GLGL I ++I+ GG + S+ +G E I L Sbjct: 313 IFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLESEPGKGSEFIVNL 365 >gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1768 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 12/301 (3%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLS 235 +M + L L ++ ++ + K ++ + I+ L++ Sbjct: 967 HLMGDGADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSEEL 1026 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A+ + AKS FLA+MSHE+RTP+NAI+G S++ ++ ++ + Y+ I Sbjct: 1027 TQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSL----DKKQQNYVEKID 1082 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ + LL +IN+ILD S+IEAG+ ++ L ++ + M ++A +K +E+ + Sbjct: 1083 RASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVA 1142 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWTSGRGQYISIKDNGP 410 P++ + D + QV++NL++NA+KFT G V ++ V S++DNG Sbjct: 1143 PNIPRHLVGDPLRLSQVLINLMNNAIKFTEQ-GEVMLSISQLVREDEEILLKFSVRDNGI 1201 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ E + + SF Q + G GLGL I + ++ GG+ + S+ G Sbjct: 1202 GLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFF 1261 Query: 471 I 471 Sbjct: 1262 S 1262 >gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 915 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALVFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NPTQRDHLNTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + + E + +L A +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +QVI NL+ NA+KFT G + V S + + +D G GI E + + +F Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQVEVQIRDTGIGIPESDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516 >gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 778 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 164/291 (56%), Gaps = 9/291 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRA 242 + T ++ L S ++++ + +LE K+ + ++RA Sbjct: 480 LVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDANANYLAEKERA 539 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHELRTPLNAILGFSE+++ E GP+ + Y EY DIH SG+HLL Sbjct: 540 QAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSEYARDIHDSGKHLL 599 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 N+IN+ILD+S+IEAG ++ I L ++ E + + ++A++KNI + QK+ L ++ Sbjct: 600 NVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQQKVCAGL-TMQ 658 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + M+Q++LN+LSNAVKFT GGR+ + ++I D G GI + + Sbjct: 659 GDRRAMKQIMLNILSNAVKFTGDGGRIALRT-HVHEAAMILTIADTGIGIPAQALQKIGQ 717 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ G GLGL I++S++ HGG IRS G V I+P Sbjct: 718 PFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTIIIP 768 >gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 611 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 115/506 (22%), Positives = 203/506 (40%), Gaps = 57/506 (11%) Query: 40 LHVESLFRVSPILPLFVLLVANI-GTWFTQNPIFPM-----------WSLITLAVYAANL 87 HV S + ++ + + I + P+ LAV Sbjct: 87 AHVLSSIAFAGLVMMIAIPTGGIESFAAVWLVVVPLEAALSASRRVIAFASMLAVSCVLA 146 Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP------------------ 129 + + + IA + Sbjct: 147 LISISYFDVLPPSDAGAAAHGVFMAFGIASATLYAAGVAFGCEVLMRTGASLLNVEEDRY 206 Query: 130 -------------GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS- 175 I +A L+ + +S L + L V ++ P + Sbjct: 207 RLLARHMGDVISRHRRNGAVQFISPAAESLLGVPVSELQDHGLFDRVHVADRPAYLTTLA 266 Query: 176 ----------TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + + + + + + +S+ + Sbjct: 267 AAALGKGAQSVEFRLRREAASDARFEAHLSGDFIWVEMRCQPLESSSPAEPEVVAVMREV 326 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + + D R AE + AK+RFLA+MSHELRTPLNAI+GFSE+I E PL+ Sbjct: 327 TDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMIVQEATLPLDAT 386 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 KEY I+ SGQHLL+++N ILD+S++E+G +E+ + +++ +L L+A++ Sbjct: 387 RRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKARD 446 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 IE+ ++ +L + D + RQ++LNL+SNA+KFT GGRV ++ G + + Sbjct: 447 NGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISA-RVEGARMVLRV 505 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GIA+ ++ + F Q + +G GLGL I ++++ H G+ ++SK+ EG Sbjct: 506 MDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEEG 565 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491 V +LP L +P+ S+ Sbjct: 566 TTVTVMLPL--TLTLVPDAEPPSSNI 589 Score = 37.9 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 12/212 (5%) Query: 21 DHLGLEYPSKMDFD----REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 D L +D T L L F + +A G W Sbjct: 9 DRLDALLHPSARYDALTRARHRTFMAPRLLGSLVALAAFPMYLALRGAPTALEVAAFAWL 68 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 ++ + + G+ + + I + + W Sbjct: 69 VVPILLSYFLSRTGRYEGAHVLSSIA-------FAGLVMMIAIPTGGIE-SFAAVWLVVV 120 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + ++ +++ A+ + V+ S + V Sbjct: 121 PLEAALSASRRVIAFASMLAVSCVLALISISYFDVLPPSDAGAAAHGVFMAFGIASATLY 180 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + + L ++ +L+ + ++ L+A Sbjct: 181 AAGVAFGCEVLMRTGASLLNVEEDRYRLLARH 212 >gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 803 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 146/324 (45%), Gaps = 14/324 (4%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH--LFKSNVKILSCQAEKDDLIAEL 228 +A + + + M + + + ++ I++ Sbjct: 227 ALACLERHFTTPEEPYRAEFRMRTKQGGWCWILARGKVVARTADGQPHRMVGAHQDISQR 286 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + AE+ N AKSRFLA+MSHE+RTP+N ILG E++ P Sbjct: 287 KQLEADLLAAKTEAEQANQAKSRFLANMSHEIRTPMNTILGMGEILLN---APNLTPKQH 343 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ R+G LL LIN+ILDLS+IEAG L + +L D ++ I ML+ A++K + Sbjct: 344 RYLSISQRAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMARDKGL 403 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + IDP L V D + RQ++LNLLSNA+KFT G + + ++ D Sbjct: 404 SMQCVIDPQLPTHVHGDPQRFRQIVLNLLSNALKFTDQ-GSITLHAKPIETGRLQFTVSD 462 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ E I + F Q G GLGL I + ++ G+ S++ EG + Sbjct: 463 TGIGMPEQVITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANSQVGEGSQ 522 Query: 468 VIAILPNTRVLNFIPEDNHESTQY 491 I + +P N E+ + Sbjct: 523 FIFEI-------ELPAANSETVKQ 539 >gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 858 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 11/279 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + L E E A + E +RA E + AKS F+A +SHE+RTPLNAI+G + +++ Sbjct: 456 SRNIQLRKETEKAYA---EAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQSC 512 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + S ++LL++IN++LD S+IE+G+ E+ ++ +S+ +VR+ + + Sbjct: 513 ----TDPVQESYLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSI 568 Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396 + +A+ N IDP + V D + Q++LNL+SNAVKF+ G ++ V Sbjct: 569 NEPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERV 628 Query: 397 SGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G S++D G G+++ ++ + F Q + G GLGL I + ++ G Sbjct: 629 HGENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHG 688 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 + ++ G L + P H T+ Sbjct: 689 EIWAVTEEGVGSTFFFRLQLEKKDAATPAAQHPETKQSA 727 >gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 631 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + E + A + + R+ +E+ N AKS FLA MSHELRTP+N Sbjct: 219 LTDLARHINNLACALEQSGREQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNG 278 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E ++ N+ EY S +HLL +IN+ILD SRIE G EL Sbjct: 279 VLGMLQLLETTSL----NDEQTEYAALATESTEHLLKVINDILDFSRIERGALELEAIPF 334 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++++ + + Q AQ++ +++ + P L V D +RQ+++NL+ NA+KFT Sbjct: 335 NLLELLQGSVQVFQHSAQQRGLQLLLETQPGLQQLEVRGDPTRIRQILVNLIGNALKFTE 394 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G++ V W Q + ++ D+G GI + + +F Q +I G GL Sbjct: 395 E-GQIRVETRWQPLDDQVLWFTCAVHDSGIGIDAERLEHMFDAFQQADTSISRRYGGTGL 453 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLPIA+++ GG S+L +G +P Sbjct: 454 GLPIARTLAERMGGTLQAESQLGKGSVFTLEIPL 487 >gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 1397 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 8/276 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + +L E ++ + R AE N AKS FLA+MSHE+RTP+ Sbjct: 829 KNWGDEEISLLRVLTELFTNAELRYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPM 888 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G + ++ ++ E + + SG+ LL +IN+ILD S+IEAG+ EL E Sbjct: 889 NGVIGMTRLLLNTSLA----EEQRSFAQTALASGESLLTVINDILDFSKIEAGKLELEEI 944 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 + L ++ + ++ ++A +K +E P + D +RQ++ NL NAVKFT Sbjct: 945 SFDLRLLLDDFAAIMAVKAGDKGLEFICAALPDVPVRFIGDPDRIRQILTNLAGNAVKFT 1004 Query: 384 AIGGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V+V++ + S+KD G GI ++ + SF Q ++ G GL Sbjct: 1005 HKGEVAVYVSLLRETDEEVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGL 1064 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GL I++ ++ G+ + S+ G E L + Sbjct: 1065 GLAISRQLVELMSGEIGVNSQSGIGSEFWFTLSLKK 1100 >gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 845 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 141/287 (49%), Gaps = 12/287 (4%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + I + + + + L + RAE + KS FLA+M Sbjct: 554 VVEILSIGNDITERLLAEQEIRELNASLEKRVTERTEELQTALIRAEAADKIKSAFLATM 613 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+I+GF+ +I GPLNNE K+ +G + S +HLL LIN++LD+S+IEA Sbjct: 614 SHELRTPLNSIIGFTGIILQGLAGPLNNEQTKQ-LGMVRGSARHLLELINDVLDISKIEA 672 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ E++ +L+ ++ + L ++K + + I L + +D + + Q+++NL+ Sbjct: 673 GQLEVNSETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEIVSDRRRLEQILINLV 732 Query: 377 SNAVKFTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +NA KFT G + +T + R +S+ D G GI ++ + F Q Sbjct: 733 NNAAKFTEK-GSITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGIKPDDLDLLFKPFHQ 791 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +G GLGL I + ++ GGQ S+ G + +LP Sbjct: 792 IDSGLSRLHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLLP 838 >gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] Length = 590 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + + ++++ I Q Sbjct: 355 ELKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAM--EDPQLRQQFLSIILTESQR 412 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + +LI ++LDLS++E ++LS ++ L ++ E +L RA EK I + P + Sbjct: 413 MESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAW 472 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + + QV +NL+ NA+ +T GG VHV++ + ++D G GI EI + Sbjct: 473 IDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEE-TITVHVQDTGIGIDSDEISRI 531 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ H G+ ++S++ +G L Sbjct: 532 FERFYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKL 583 >gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 758 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 12/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + R++A+E N AKS FLA MSHE+RTPL I+G +E+ +G N Sbjct: 363 VHIRKQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAEL----AIGNPGN 418 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I +SGQ+LL++IN+ILD S++EAG+ EL ++ + ++ I + + Sbjct: 419 PGVQEYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIR 478 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTS 397 EK + + + L V DE +RQ+ NL+ NAVKFT G++ + + ++ Sbjct: 479 EKGVTLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEK-GKIELRLTGLTSEENSA 537 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + I D+G GI + ++ F Q + QG GLGL I + ++ GG Sbjct: 538 RMMLHFEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIG 597 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 +RS G +P R L P + + Sbjct: 598 VRSTEGVGTTFFFNIPVERALPEEPAQDPD 627 >gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 105/458 (22%), Positives = 180/458 (39%), Gaps = 26/458 (5%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75 + T H + + DF+R + ++ ++ + + Sbjct: 86 VKQTNLHPRIPENAPDDFERAALEYFIKDPQNNE---------------FWQRVTLSDGT 130 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + + + + L G +L + E Sbjct: 131 PAFRYVMALRAEESCLRCHGQPKGELDPTGYPKEGLELGDVAGAISVVLPMRETLASART 190 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + + IAL L +L V + +A I + + + Sbjct: 191 ESLRLAALVVFIALLCFGLIWLILYRQV--ATPLAELADVATHIGTGNFVIEPERLQSLK 248 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 A + + + ++ A + +AE +E + E + KS FL Sbjct: 249 ANQETAVVAQAFEQMSDRLQELYAGLEQKVAE---RTRELEEANRELERASRYKSEFLTM 305 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTPL +I+ F+E++ P +E + ++ S Q LL +I +LD SR+E Sbjct: 306 ISHELRTPLTSIIAFTELLLN---DPRLAPEQRESLSEVLESSQKLLGMITNLLDYSRLE 362 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG+ +L + L D++R+ + +Q A +K I + P + V AD + QV+LNL Sbjct: 363 AGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDCAPEVPLVHADPLRISQVLLNL 422 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNAVKFT GGRV V R ++++D GPG+ E E + F QG K Sbjct: 423 LSNAVKFTPEGGRVAVEC-RADQREVRVTVRDTGPGVPEEEQELIFQPFRQGR--EKGRP 479 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +G GLGL ++ S++ H G+ + S+ G LP Sbjct: 480 EGWGLGLALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517 >gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 993 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I +E K + R AE N AKS FLA+MSHE+RTPLNA+LGF++V+ + Sbjct: 288 EDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNG 347 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +++ IHRSG HLL LIN+ILDLS+IE+G + SL DIV + L+++ Sbjct: 348 DEAV--DHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVK 405 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A E+N+ + ++ + +D +RQVI NL+ NA+KFT G + ++ T Sbjct: 406 ADEQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNA 465 Query: 401 -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + I D G G+ + + SF Q + G GLGL I++ + G Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMG 525 Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493 G + S++ G LP + PE+ Q K Sbjct: 526 GSLTVHSEVGIGSTFRVELPTSIASLQDMVSPEELARLAQEKS 568 >gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 797 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 142/267 (53%), Gaps = 14/267 (5%) Query: 216 SCQAEKDDLIAELEVAK---SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + K+ L + + ++RAE+ +KS FLA+MSHE+RTP+ AILG+++ Sbjct: 358 DLRISKEQLEKNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEIRTPMTAILGYTD 417 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 V+ E +N +++ + I R+G+HLL +IN+ILD+S+IEAG+ E+ S ++ Sbjct: 418 VLLHEVA---DNPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEVEIIPTSPTQLI 474 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + ++ +RAQEK++E+ + L + D +RQ++LNL+SNA+KFT GG V + Sbjct: 475 ADVYTLMAVRAQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAIKFTDKGG-VRI 533 Query: 392 TVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 I ++D+G G+++ + + F Q ++ G GLGL I+ Sbjct: 534 RAAIEQGLPGQTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRRFGGTGLGLTIS 593 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + GG+ + S +G + Sbjct: 594 QRLAQKLGGKISVESMPGKGSTFCVSI 620 >gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 1053 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 18/337 (5%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLF 208 ++ + + + + + L+ + + +L L+ +A + + + Sbjct: 282 AVLSTMDKRAVQVKTEALQFLTITLTIWLVSIILAILGFLLSNEIAKNIQNLENVLKRVA 341 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELR 261 + + E A SL + + ++ A+E + AKS FLA+MSHE+R Sbjct: 342 EDTNESDKAIDINLHTAKGTEEAYSLLEKIIEQTKQDKEAAQEASEAKSMFLANMSHEIR 401 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+GF+E+++ + E +E++ I +S ++LL +IN ILDLS+IE+ + E+ Sbjct: 402 TPLNGIVGFTELLKDTGL----KEEQQEFVEIIEKSSENLLEIINNILDLSKIESNKLEI 457 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + + I+ + + +RA EK+I++ IDP L + D +++V++NLLSNAV Sbjct: 458 EDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDPELEQPLKGDPTKIKEVVINLLSNAV 517 Query: 381 KFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 KFT+ G ++V + ++D+G G+ + + +F Q +I Sbjct: 518 KFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKY 577 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ + GGQ + S+ EG L Sbjct: 578 GGTGLGLTISARFIELMGGQLDLHSEPGEGTTFFFTL 614 >gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 985 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 11/274 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + E + AE + AKS FLA+MSHE+RTP+N I+G ++++ + Sbjct: 581 ERDITRSKQRERELAEAKLAAEHADRAKSEFLANMSHEIRTPMNGIIGMADLLAEAELTA 640 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + ++ + I S Q LL +IN+ILDLSR+EAG++ +S +L D + + + Sbjct: 641 DD----QQNVETIRSSAQALLKIINDILDLSRLEAGKFAISREDFNLRDCIGGAADLFRP 696 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +A EK + + L + D+ +RQ+++NL+ NAVKFT G++ V V Sbjct: 697 KALEKGLSMQVSYANGLPDRLHGDDGRLRQILVNLIGNAVKFTPD-GKIAVRVSQAGEDP 755 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++D+G GI+E + + F Q A A G GLGL I+ + GG + Sbjct: 756 CRLVVEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTGLGLTISSMLAKRMGGGITV 815 Query: 459 RSKLREGVEVIAIL---PNTRVLNFIPEDNHEST 489 +S+ +G L P ++ ++ E+ Sbjct: 816 QSQPGKGSCFRLELQMVPASQAVDATAPALPEAP 849 >gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134] gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134] Length = 670 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 100/263 (38%), Positives = 142/263 (53%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + +AEE N KS FLA+MSHE+RTPLN ILG ++IE+E+ +N Sbjct: 417 ITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIEIES----DN 472 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET Y I +SGQ LLN IN ILDLSRIEA R E+S +++I++V + L++ A Sbjct: 473 ETMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLAN 532 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +NI + + + + V D + QV+ NLL NA+KFT GG V + + I Sbjct: 533 SRNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRLN-DENNCLTIE 590 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + F Q S ++ QG GLGL IA+ I+ GG + SK Sbjct: 591 VIDTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIKVHSKKNL 650 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G I P ++ PE + Sbjct: 651 GSCFTVIFPEQKLN---PEAESQ 670 >gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 802 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 8/250 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 EL AK S+ ++ AE KS FLA+MSHE+RTP++ I+G SE++ + P Sbjct: 128 QELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSETALDP---- 183 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +EY I LL+LIN+ILD S+IEAG+ L L D + + M+ L A + Sbjct: 184 EQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHK 243 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 K +E I+ + + D +RQ+I+NL +NAVKFT G + +++ S Sbjct: 244 KGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRISLDDRSDGKVRL 303 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GIAE ++ + F Q + G GLGL I++++ GG+ + S+ Sbjct: 304 RFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIGVESR 363 Query: 462 LREGVEVIAI 471 G Sbjct: 364 ESVGSNFWFT 373 >gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1235 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 12/249 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + R+ A E + KS+FLA+MSHE+RTP+N +LG + ++ + K+++ Sbjct: 560 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQA 615 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S HLL +IN+ILD S++EA EL + L + + I +L +A+ K IE+ Sbjct: 616 IRTSANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAI 675 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIK 406 +D ++ + D +RQV+LNL+SN +KFT G V + V ++ Sbjct: 676 VDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLILRYEVQ 734 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + +F Q + G GLGL I + ++ GG+ + S + +G Sbjct: 735 DTGIGIPPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGS 794 Query: 467 EVIAILPNT 475 LP + Sbjct: 795 NFWFTLPFS 803 >gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1305 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 16/285 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L ++ + + + + E + + AE N AKS FLA + Sbjct: 568 LDLLKHLADQMGVALTQAHLLEQETRNAYLLTRQ-NEELTAAKHAAEVANAAKSNFLAIV 626 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NA++G S ++ + P +Y+ I S LL +IN+ILD S+IE+ Sbjct: 627 SHEIRTPMNAVIGMSGLLLDTCLTP----EQFDYVETIRNSSDTLLTIINDILDFSKIES 682 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G+ EL E L + E + +L +A K +++ IDP L + + D +RQ++ NL Sbjct: 683 GKLELEEQPFDLRICIEEALDLLAPQAASKGLDLVYFIDPHLPTQIIGDITRLRQILWNL 742 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQ 426 LSNAVKFTA+ G V ++V +++D G GIA ++ + F Q Sbjct: 743 LSNAVKFTAM-GEVVISVQGRELEFYPPFISTYEIQFAVQDTGVGIAREQMERLFKPFSQ 801 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G ++ G GLGL I++ + G+ + S+ +G Sbjct: 802 GDASMTRRYGGTGLGLAISKRLSELMRGRMWVASQEGKGSTFYFT 846 >gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 973 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 6/302 (1%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + A +S S+ L + ++ + + + + Sbjct: 514 AAAASLSRERPTASVVFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQERH 573 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R AE AK+ FLA+MSHELRTPL +LG +++ ++ + +G Sbjct: 574 LERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLA---GDASLSDAQRHLVGLA 630 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+ LL ++N+ILD S+IEAG+ + SL +V C ++ A++K + + I Sbjct: 631 QEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTDI 690 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412 + D +RQ++LNL SNAVKFT G + + VG+ + +++ D G GI Sbjct: 691 EGDAPDRFVGDPTRLRQILLNLASNAVKFTPR-GEITMRVGFAASTGRVRVAVTDTGIGI 749 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++P + F Q + G GLGL I + ++ GG + S G L Sbjct: 750 PADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVESVPGRGSTFWFEL 809 Query: 473 PN 474 P Sbjct: 810 PL 811 >gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 936 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EDV 742 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + LL LI++ILDLS+IEAG +E + + + + + + ++++A+ Sbjct: 743 AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E ++E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 803 E-DVELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYELKEGELEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 859 YVKDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 915 KGSRFWFTIPGVIVTEEM 932 >gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 926 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EDV 732 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + LL LI++ILDLS+IEAG +E + + + + + + ++++A+ Sbjct: 733 AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAK 792 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E ++E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 793 E-DVELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYELKEGELEF 848 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 849 YVKDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 905 KGSRFWFTIPGVIVTEEM 922 >gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 421 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 135/251 (53%), Gaps = 3/251 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++A+ ++ +E + KS F A +SHE+RTP+ +I G++E++ E+MG LNN Sbjct: 174 ITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGKLNN 233 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I + L L++++LD+SRIE + L+ + + D++ + L A Sbjct: 234 -NQKMCLNTILENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPIAL 292 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K+I++ +I ++ AD+ + QV N+ NA+KF+ +V +T IS Sbjct: 293 KKHIKLSLEIPN--ITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDILIS 350 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 IKDNG GI++ E + F Q + + + G GLGLPI++ I+ H G+ + S+L + Sbjct: 351 IKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESELNQ 410 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 411 GSTFYISLPKK 421 >gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1057 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 13/311 (4%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSD 236 ++ LA F ++ + + DL E K+ + Sbjct: 481 FFKQPWIVKFVLACGFLFTGLFGWFLLIVSSHTAEVENRVRLRTRDLQLANEHLKASELE 540 Query: 237 E--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + ++ A+E N AKS FLA+MSHE+RTPLN ++G ++ + P Sbjct: 541 QSKAKEEAQEANRAKSEFLANMSHEIRTPLNGVIGCLSLLMNTKLQP----DQSNLAKIS 596 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +S + LL++IN+ILDLS+IE G L + L ++ E + L+A+EK I + Sbjct: 597 QQSAESLLDIINDILDLSKIEMGTLVLDKQEFELRALIEEVTNIFVLKAEEKGIVLNSPT 656 Query: 355 DPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQ--YISIKDNG 409 P +++ D ++QV++NL+ NAVKFT G V + + + I I+D+G Sbjct: 657 TPIPNVTLFGDRLRIKQVLVNLMGNAVKFTQE-GEVALRFAIEPLADDSVILRIVIEDSG 715 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI++ + F Q + G GLGL I++ I+ G+ + S +G Sbjct: 716 IGISKENQSHLFQRFKQADGSTTRKFGGSGLGLAISKEIIQAMDGEIGLNSVEGQGSSFW 775 Query: 470 AILPNTRVLNF 480 +P + V Sbjct: 776 FRIPLSVVSTA 786 >gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 1328 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + +S + + A+ + AK FLA+MSHE+RTP+NAILG + + + + Sbjct: 583 LTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ I+ S ++LL +IN+ILD S+IEAG+ + SL ++ ++ +AQ Sbjct: 639 PSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 EK IE IDP + + D + QV++NL NAVKFT G + V+V Sbjct: 699 EKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEILVSVMPESQSSDDV 757 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KD G GI + +I + +F Q +I G GLGL I++ ++ GGQ + Sbjct: 758 TLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVS 817 Query: 460 SKLREGVEVIAIL 472 S + G + Sbjct: 818 SAVGMGSTFTFTI 830 >gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126] Length = 983 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 31/453 (6%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPI--------FPMWSLITLAVYAANL-----SLGKK 92 R ++ + A I F P W + + + K Sbjct: 147 VREKSLIAYVGYIAAVILWQFVWGGHTHLLFSQGIPSWLVGHSELIFVIIGISSGFFTKT 206 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + ++ + LLV Q GL C+ L + + + + A Sbjct: 207 FLETEKHSPTAHPVINLLLVCQALTGLVCFVDLLPSIWKNNLVYGVGLVAILSYIYAGFE 266 Query: 152 SALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203 + + F Y +F A+ + + + L L F + Sbjct: 267 AFFNKFKPARYFIFAWSMLATGAIIGMLSLIGILPSNDFTTYCFQVGVFLEAGLFSFALM 326 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ + + + +E + D RK A + + KS+FLA+MSHE+RTP Sbjct: 327 EKSRGQLESEVEQATNDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 386 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS E +E + ++ + +LL ++N+ILD S+IEAG+ +++ Sbjct: 387 LNAILGFS----KELNNASLPTDQQEQVRIVNTAADNLLTIVNDILDFSKIEAGKLQINN 442 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S ++ E + ++ + K IE + P + D ++QV+ NLLSNA+KFT Sbjct: 443 QPFSPNKLLEEMVTIMAKSSHSKRIEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFT 502 Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + G + +V I+++D G GI+ + + +F Q A+ QG G Sbjct: 503 SS-GTITFSVSGRSLPHGIHEVNITVEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTG 561 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I++ ++ G ++S L +G L Sbjct: 562 LGLVISRELVRLMNGDLTLKSVLGQGSTFNVSL 594 >gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1] gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1] Length = 1039 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 152/326 (46%), Gaps = 19/326 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L L+ V + +S ++ ++ + + K + Sbjct: 287 LTLVGVLTILVVGIGISLAHRVTRNLSLVLSYLENEKSTGDIPLTARIGGKDELS--RFA 344 Query: 219 AEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILGFS 271 E + L E + ++ E + AE E + AKS FLA+MSHE+RTPLN ++G S Sbjct: 345 REVERLTNEQQESQRNLLEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGIS 404 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ + T K+Y+ I S Q LL+LIN+ILD S+IE+G +++ + S+ + Sbjct: 405 EVLSDTDLTA----TQKDYVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRET 460 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + ++ + +EK IE+ ID ++ V AD+ MRQV++N +SNAVKFT G V Sbjct: 461 IYDIASIVAPKVKEKGIELNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDK-GSVT 519 Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + V + ++D+G GI + + +F Q + G GLGL I+ Sbjct: 520 IGVHYQGESNNMASLMFEVQDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAIST 579 Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG+ + S G L Sbjct: 580 QLIELMGGEIQLDSVKGVGSRFYFTL 605 >gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] Length = 1316 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 12/299 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + +H + + ++ A L + A ++ Sbjct: 720 GHWVWVHDRGQVMTWTADGKPLMMFGTHMDINQAKQVEQELMATNFQLEDAMARANQMAT 779 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E AE NLAK FLA+MSHE+RTP+N I+G + ++ + + + Y + Sbjct: 780 E----AELANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL----TDEQRRYARIVQA 831 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG+ LL +INEILD S+IEAG+ +L +L D L ++A E+ IE +DP Sbjct: 832 SGESLLRIINEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDP 891 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGI 412 + + D + Q++ NL NAVKFT+ G + V V + + Y S+KD G GI Sbjct: 892 DVPLGLRGDSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSVKDTGIGI 951 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ + F Q + G GLGL I++ + GG+ + S EG Sbjct: 952 QREKLGMIFNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEGSNFWFT 1010 >gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1120 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 6/252 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + ++ AE AKS FLA+MSHE+RTP+NAI+GFS+V+ + Sbjct: 517 ITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTTDL----V 572 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ I+ S LL+L+N+ILD +++E G+ +L SL +++ L ++ + Sbjct: 573 AAQRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQTR 632 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K ++I + P L+ + +RQV++N++ NAVKFT G+VH+++ T Sbjct: 633 KKRLDIELSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEK-GQVHLSIKPTQDGKVLF 691 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D G GIA I + F Q ++ G GLG I++ ++ GG+ S+L Sbjct: 692 SVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASSELG 751 Query: 464 EGVEVIAILPNT 475 +G ILP Sbjct: 752 KGSCFEFILPLK 763 >gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1172 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 138/260 (53%), Gaps = 14/260 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL A+ ++ +++AE N AKS FLA MSHE+RTP+N ILGF+E++ + + Sbjct: 407 VTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQALSS--- 463 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE + I G+ LL+LINEILDLS+IE+G+ L E+ SL +I+++ I ++ +AQ Sbjct: 464 -EQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKAQ 522 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 +K +EI + D +RQ++ NLL NAVKFT G + ++V Sbjct: 523 DKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGSVI-ISVSKRQEECHER 581 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D G GI++ + + +F Q I G GLGL I +S++ GG+ Sbjct: 582 DDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLDLMGGE 641 Query: 456 FLIRSKLREGVEVIAILPNT 475 + S +G LP Sbjct: 642 IWVNSNKPQGTIFTFCLPVK 661 >gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 792 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 114/362 (31%), Positives = 179/362 (49%), Gaps = 13/362 (3%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISL-AGMLA 194 L ++ L+++ L ++ L + + A+ + + Sbjct: 166 LLSLFLVLIVGMLALTLLVSYWLKSHITQPLASLSEWAMQVSKHKDFNARASKRNEDEIG 225 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + L + I+S E + I E +V + TR RAEE N AKSRFLA Sbjct: 226 HLVDSLNVMLSELARQE-TIVSLNRELEWEIQERKVVEKDLIATRNRAEEANKAKSRFLA 284 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI---HRSGQHLLNLINEILDL 311 +MSHELRTPLNAI+G+SE+++ + ++ +E + DI +G+HLL+LIN+ILD+ Sbjct: 285 NMSHELRTPLNAIIGYSEMLQE--VVAEDDYEREEILDDIGKVRSAGKHLLSLINDILDI 342 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IEAG+ ++S A S+ D+V E L+L A E+ ++ + + V +D +RQ+ Sbjct: 343 SKIEAGKMQISIEAFSMEDLVDEVAGALRLLADERRNKLVVRGAGDVGVVHSDLVKVRQI 402 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 + NLLSNAVKFT G V + S ++D G GI++ I + F Q Sbjct: 403 LFNLLSNAVKFT-EDGVVELICERESVAGEDWMLCKVRDTGIGISDRAIKELFRPFSQAD 461 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + G GLGL I++S GG+ + SK EG E LP T +N PE+ E Sbjct: 462 PSTTRRYGGTGLGLAISRSYATMLGGEITVSSKEGEGSEFCIRLPTTAEING-PEERIEG 520 Query: 489 TQ 490 + Sbjct: 521 VE 522 >gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii 5216-82] Length = 918 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 162/373 (43%), Gaps = 29/373 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q +I G GLGL I Q ++ GG S+ G + L+ P Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI----NLDLNP 522 Query: 483 EDNHESTQYKCYA 495 E +C+A Sbjct: 523 NIIIEGPSTQCFA 535 >gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 775 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 9/291 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRA 242 + T ++ L S ++++ + +LE K+ + ++RA Sbjct: 477 LVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDANANYLAEKERA 536 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + NLAKS FLA+MSHELRTPLNAILGFS++++ E GP+ + Y EY DIH SG+HLL Sbjct: 537 QAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSEYARDIHDSGKHLL 596 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 N+IN+ILD+S+IEAG ++ I L ++ E + + ++A++KNI + QK+ L ++ Sbjct: 597 NVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQQKVCAGL-TMQ 655 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + M+Q++LNLLSNAVKFT GGRV + ++I D G GI + + Sbjct: 656 GDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMI-LTIADTGIGIPAEALDKIGQ 714 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ G GLGL I++S++ HGG IRS G V I+P Sbjct: 715 PFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVTIIIP 765 >gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 1103 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 13/272 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + A++ + A + AKS FLA+MSHE+RTP+N ++G ++ + N Sbjct: 415 VTKEKNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL----N 470 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I S LL++IN+ILD S+IEAG+ L + L ++ + +L L+A Sbjct: 471 GEQKSMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQAN 530 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI----GGRVHVTVGWTSGR 399 K IE++ D SL V +D + QV+LNL+ NAVKFT G+V V+ Sbjct: 531 NKGIELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQHD 590 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I I+DNG G+ E +I + +F Q + G GLGL I +S++ GG Sbjct: 591 IAPYVEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGDI 650 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + S+ G LP V P+D + Sbjct: 651 HVDSRFGVGSRFSVELPFIEV-EEPPQDPTPN 681 >gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 923 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 11/276 (3%) Query: 208 FKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 +++N++ + + D I E E + + AEE N K+ FLA ++HE+RTPLN Sbjct: 357 YRTNLETIIFERTNDLQQKILENEQYQKELKLAKDLAEEANKTKTDFLAKVTHEIRTPLN 416 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I G ++ + ++ N+ +E + I S HLL ++N++LDLS+IEAG+ Sbjct: 417 SIKGMNDYLLSTSL----NDDQRECLSIIKESSNHLLTIVNDLLDLSKIEAGQLVFEHID 472 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++ I +LQ A +K +++ + V D +RQV+ NL +NA+KFT Sbjct: 473 FALKQLIESTIRILQPLANQKKLDLHVAYEGDADIVVRGDPSRIRQVLFNLANNALKFTQ 532 Query: 385 IGGR-VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + +V W Y ISIKD G GIA + + F Q + G GL Sbjct: 533 TGTVGIVASVAWQESLDAYAITISIKDTGIGIAAEALQRIFQPFVQSDNSTSRKFGGTGL 592 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GL I ++A GG + S+ +G L R Sbjct: 593 GLSICNQLIALMGGTIAVSSRPGQGSTFTFTLQLQR 628 >gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis S2] gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis S2] Length = 639 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 21/350 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 + + LLIAL +S L N + P+ +S Sbjct: 307 FLALQADVRNQTFVVGLIGLLIALIVSYLINRGI-------IKPLEQLKQGAEWVSNGRY 359 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 D ++ + F + K D L E K +E + E Sbjct: 360 DQK---VIVDSDDEFGELAKAFNKM---ATQINISDDKLKKHAEELKISYNELK----EL 409 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS +A +SHELRTPL +I G+ E++ TMG + N++ K+ + + L LI Sbjct: 410 DKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQKKCLQVADDNIVRLRRLI 468 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS+IE G E+ ++L IV + I L+ A EKNI++ ++++ ++ AD+ Sbjct: 469 ESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVED--IAIEADK 526 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV+ NL+ NA+KF+ + V+ G ++ + D G GI + ++ + F Sbjct: 527 DRITQVLTNLIENAIKFSPANESILVS-GVLEDEHIHLKVTDRGAGIPKKDMEKIFNRFY 585 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + K + G GLGL + +SI+ H G + S+L +G ILP + Sbjct: 586 QVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPIS 635 >gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 966 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 17/346 (4%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 L I + +LI I + L + +S +V I G + Sbjct: 192 RLLITAAIFILIGACIVLFVSERLSRPLMHLTRLANELAQGNFAVSDNVKKIHPDGEIGA 251 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + F+ + +L S K+ L ++ S E R +A + +KS FL+ Sbjct: 252 LTTAFSQMARNLKISYDKLEEY---SRTLEQKVINRTSELAEARDQAIAADKSKSEFLSM 308 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+NAI+G + + + ++Y+ + S + LL +IN+ILD S+IE Sbjct: 309 MSHEIRTPMNAIIGMTRLALQTDLTA----KQQDYLTKVQISSRALLGIINDILDFSKIE 364 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 AG+ EL A +L D++ + ++ +A+EK ++I + S + D + QV+LN Sbjct: 365 AGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFITADDVPSDLIGDPLRLGQVLLN 424 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQY---------ISIKDNGPGIAEGEIPTVLTSFG 425 L++NAVKFT+ GG V + V G Q S+KD G G+ +I + SF Sbjct: 425 LVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEFSVKDTGIGLTTEQIGGLFQSFN 484 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q + G GLGL I + ++ GG + S++ +G I Sbjct: 485 QADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQGSTFIFT 530 >gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea DSS12] gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea DSS12] Length = 931 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 27/357 (7%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD + Sbjct: 177 HRAAVAAFIMVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDTR---VDG 230 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAE 243 + + + + E I ++E+ D +KRA Sbjct: 231 HLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRAL 290 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS FLA+MSHELRTPLN ++GF++ + + + ++Y+ I +S +LL Sbjct: 291 EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHS----SQQDYVNTIEKSATNLLG 346 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 +IN+ILD S++EAG+ L +L + + + I +L A+EK+IE+ ID S+ + Sbjct: 347 IINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQSIPEDLS 406 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIP 418 D Q+I NL+ NA+KFT I G VH+ + T + + D G GI E + Sbjct: 407 GDAMRFSQIITNLVGNAIKFTDI-GSVHLRLQLTESTNDKVNLRCEVIDTGIGIDESQQE 465 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +FGQ +I G GLGL I + ++ GGQ SK G LP + Sbjct: 466 LLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSFWFTLPLS 522 >gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1200 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 92/269 (34%), Positives = 145/269 (53%), Gaps = 21/269 (7%) Query: 238 TRKRAEEE-----------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +K+AEEE N KS+F+A++SHE+RTP+NAILGF E++ N+ Sbjct: 693 AKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLN----IHNDPR 748 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 YI I SG+ LL LIN+ILDLS+IEAG+ EL+ I+L +++ + + +AQ K Sbjct: 749 TLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFSTQAQTK 808 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYI- 403 +++ + +P++ V DE +RQ++ N++ NA+KFT G +V V + YI Sbjct: 809 KLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLATNNNYIQ 868 Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S++D G GIA G+ + F Q G GLGL I + + GGQ +++S Sbjct: 869 LKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGGQIILQS 928 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489 +L +G I P + + + ES+ Sbjct: 929 ELGKGSIFTLIFPKIQSVTSGKKPPRESS 957 >gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 1106 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 98/471 (20%), Positives = 168/471 (35%), Gaps = 11/471 (2%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83 R+ + +V L + V +G + Q +W L Sbjct: 298 TRPGRVSSALVRQGLLDYVVVLEYQFDAWGWRTVGVIALGQVWHQFRQNALWMLGLTGSL 357 Query: 84 AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143 + + +++ I + L + + + +A Sbjct: 358 SMLILAWIWLIDRRIM-RPAQRQSLRLQESDALGRFVIEVAGVGLMIVERSTRQVLLANA 416 Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 + + + + D+ L G Sbjct: 417 AAHSITDQATPAGLAQLQDACDARLTSEGTTTEGMPRVQPCFDVDLVGRNGQTRYLEVRQ 476 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 ++ +L + + + +++ E + A+ N AKS FLA+MSHE+RTP Sbjct: 477 VEITYEGRAAVLRALND----VTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTP 532 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG E++ L + ++ + + + Q L+ +IN++LD S+IEAG+ L Sbjct: 533 LNGMLGSIELLGLTRLDS----RQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQL 588 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + +IV + A K + + DPSL V AD + Q++ NL+SNAVKF Sbjct: 589 RPCRVEEIVEDVTRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKF 648 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G+V VT G G I + D G GIA + + F Q G GLGL Sbjct: 649 TEQ-GKVIVTAMRKPGGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGL 707 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 I + ++ G+ + S+ G LP P D T + Sbjct: 708 SICRRLVGLMSGEIRLVSEPGLGSCFTVSLPLASAGAEAPADAWPRTALRG 758 >gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 568 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 12/311 (3%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 F+ +++ ++ +++ + + +FT + LS E Sbjct: 263 LFFMCTALLLLGVAVTFVLNRYFVSRVKRVQEQLRGEYFTGPEQRTVR-----LSGNDEL 317 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 DL + L E + +AE + K+ FLA+MSHE+RTP+++ILG E+++ + Sbjct: 318 SDLSESINDILVLLQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKETNV-- 375 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E +E++ +G+ LL +IN++L++S+IEAG ++ L ++V + + L Sbjct: 376 --DEEQREFLNIAGTAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFAL 433 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K +++ ID ++ V D +RQV+ NL+SNAVKFT+ G + V++ W + + Sbjct: 434 DAARKGLKLVCHIDENVPDKVVGDATRIRQVLNNLISNAVKFTSE-GTIVVSIYWEAEK- 491 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++KD G GIA +I + SF Q + G GLGLPI++ +++ GG+ + S Sbjct: 492 LIFAVKDEGIGIAADKINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCS 551 Query: 461 KLREGVEVIAI 471 + EG Sbjct: 552 SVGEGTTFRFY 562 >gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] Length = 885 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 14/342 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L++ +S+ L + L P+ + + L ++L + Sbjct: 290 AISVITGLIVIISVITLPILIFIVVRNLLLNPIELLGEASHRVGDGDLSVTLPAYTTDEV 349 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAK 249 H+ E + + E S + +AE+ N K Sbjct: 350 GILFNDFNHMINQIKHYQQQLEEYKHHLEDKVESRTKALESMNSKLETAIAQAEQANQLK 409 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 SRFLA+MSHE+RTPL AI+GF+E + + K ++G I R+ +HLL LIN IL Sbjct: 410 SRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTND----KHHLGTILRNSKHLLELINNIL 465 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IEA + + ++ ++++ ++ + +++ AQEK + L + +D + Sbjct: 466 DLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTINYALPLPHTINSDITRL 525 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+++N+ SNAVKFT G+V +T + + + I+D G G++ +I + T F Q Sbjct: 526 KQILINIASNAVKFTEQ-GQVTITAKYQAPKTLTFVIEDTGIGMSSNQIKRLFTPFEQAD 584 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I++++ GG + S++ G Sbjct: 585 ATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTI 626 >gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 728 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 166/332 (50%), Gaps = 22/332 (6%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + + ++ +T + +L E A+ ++ Sbjct: 256 LGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAQAQENLRQSN 315 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E + KS FLASMSHELRTPLN++LGF+++++ + G LN+ + + I +SG Sbjct: 316 EKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQ-VQFIEKSGL 374 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+ILDLS+IE+G+ EL+ +++ ++ EC+ M+Q RA +K + + + D ++ Sbjct: 375 HLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKMVQPRADKKCLALSLESDYRIT 434 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----------------VGWTSGR--GQ 401 D++ +RQ+I+NLLSNA+KFT GG+V ++ + Sbjct: 435 QALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYGSQIDGDYRPDCSPINDSTPYL 494 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D+G GI + + F Q ++ +G GLGL + + + HGG ++S+ Sbjct: 495 CLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 554 Query: 462 LREGVEVIAILPN---TRVLNFIPEDNHESTQ 490 + +G LP R L HES + Sbjct: 555 VNQGSRFRVWLPLTEMRRELAKSYHPEHESQE 586 >gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] Length = 1053 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 11/357 (3%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIM 180 L L+ G P L ++A ++ P +V A + Sbjct: 268 ALRALLPAGAKPPLLLNAIRAAGGHFVAELNFRRADAASEHDLEGTVPYLVHASLIHSQA 327 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 I ++ ++ + + + + + + +D+L A +E + ++ Sbjct: 328 GKLEGAIVISTNISVLKAREKALRNNERQLHETAEELRNHRDNLAAMVEEQTRDLRQAKE 387 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AEE + AKS FL++MSHE+RTPLNAILG S++ + N +++ I + H Sbjct: 388 QAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQTPL----NPQQNQHLSKIRLAADH 443 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD SRIEAG+ + + L ++ E +L R +EKN+E+ I S Sbjct: 444 LLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCVDIAAEASR 503 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415 D ++QVI+NLL NA+KF+ G V + S + S+ D G GI+E Sbjct: 504 SFVGDPLRLKQVIINLLGNAIKFSDQ-GSVRLGCRIDSTDHNSTSLHFSVSDEGIGISEE 562 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + ++F Q + G GLGL I++ ++ GG+ + S G + Sbjct: 563 QQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLESTPGNGSTFHFTI 619 >gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297] gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297] Length = 767 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 204/465 (43%), Gaps = 34/465 (7%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL-------AVYAANLSLG 90 + L LF+ A + +W + A +L G Sbjct: 196 LFLFATVRDVSYLYYVLFITTFACLHLSLDGYIFQHVWPESMAYSPIPDTLLSAGSLIFG 255 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + + + ++ I I L L L PG + LL+A+ Sbjct: 256 LLFITYFLNLKSELPLLNRIIQVMIGIMLAVIALALYYPGLPIDSWTVPLMGTLLLMAVL 315 Query: 151 ISALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 I + F L A + + VV A+ ++ + L G + F Sbjct: 316 IGVYAAFKGLVTARYFTLAWVVFAVGNLYLV------LVLTGTNLLPVPPLMVSKAAAFA 369 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + A + ++ E + L +AE A+S FLA +SHE+RTPLN +LG Sbjct: 370 EAMLLSFALAHRIRVLREERQKQQL------KAE----AQSYFLAQISHEIRTPLNGVLG 419 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++ + +E K+YI I SG+ LLNL+N++LD SRIEAG+ + E I + Sbjct: 420 TVDLLDQTQL----DEEQKKYIETIQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQ 475 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388 D+ R + + + +A +K++ IDP++ + +D + +RQ+ NL+SNA+KFT G+ Sbjct: 476 DLFRHQVELFRAQANQKSLNFKLTIDPNVPEWILSDAQRIRQIATNLISNAIKFTDQ-GQ 534 Query: 389 VHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V V++ T G I ++D G GIA EI + ++ Q + + G GLGL I+ Sbjct: 535 VVVSLSSTRRNGHPYLSIQVRDTGIGIASHEIAHLFDAYQQVDVGKRRVYGGTGLGLAIS 594 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489 Q ++ GG ++S+ +G E LP R L+ P N E+ Sbjct: 595 QQLVDLLGGTITVQSQQNQGSEFTVQLPLKTRTLSAPPTANVETA 639 >gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 660 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 150/273 (54%), Gaps = 15/273 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A++ ++++ AE N AK+ FL +MSHELRTPL AILG++++++ Sbjct: 378 RDITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQ---DKR 434 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +E I I+RSG+HLL LI++ILDLS+IEAG+ EL S L + ++ + + +R Sbjct: 435 LTDEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIR 494 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 ++K IE+ + L AD K +RQ++LNL+SNA+KFT G+V + V +T Sbjct: 495 FEQKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTET-GQVSLKVQYTPIPDN 553 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + ++D+G GIA + + F Q + +G GLGL I ++++ GGQ Sbjct: 554 KNQGKMRVDVEDSGIGIAAAHLEKIFLPFQQVGNKM-YYSEGTGLGLSITKTLVEMMGGQ 612 Query: 456 FLIRSKLREGVEVIAILPN---TRVLNFIPEDN 485 ++S+L G +P LN P Sbjct: 613 LQVKSRLGRGSHFWFEIPIQIHAFALNEPPPPE 645 >gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC 74-1112] Length = 918 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli M718] gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli M718] Length = 918 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia albertii TW07627] gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia albertii TW07627] Length = 918 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|83944788|ref|ZP_00957154.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851570|gb|EAP89425.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 577 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 186/442 (42%), Gaps = 26/442 (5%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 R P+ L A + + ++++ +A + + K + Sbjct: 14 ARKRARELPMRIGTALFGAFVLFFAGLKLFALGYAVLAVASQCLDHWIASKFRDESRTAP 73 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW--TPEYLTIYKSATLLIALSISALSNFML 159 +I + + + ++ L+L W T E + + L +++ + N L Sbjct: 74 VTRPEKISANLSMLLASIIYSSLSLGLWTAWGQTGESIALLLLCGSLFHIAVHSNENLSL 133 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 + ++ L A+ +++ L A F + + + Sbjct: 134 TLSGGGPAAAYLLGLPASALFRDGEMNVEYLLALIAATLFLLHFFIAARRFGDASHRIKD 193 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++AE+ N AKSRFLA+MSHE+RTPLN ++G ++++E + Sbjct: 194 ------------------AYRQAEKANAAKSRFLANMSHEIRTPLNGVMGMAQLLEQTEL 235 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++ ++Y+ ++ SG L LI+++LD+SRIEAG EL ++ D++R + Sbjct: 236 ----DDRQRDYVRMLNSSGTALRGLIDDVLDISRIEAGELELDDTPYRPADLLRNTADTI 291 Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +A K + + I P L + V D + Q++ N NAVKFT + G + ++ Sbjct: 292 ASQAASKKLTVELDIAPELEALVAGDATRVLQILTNFAGNAVKFTDV-GAIAISGRVLET 350 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +S+ D GPGIA ++ ++ F Q ++ +G GLGL IAQ I GG + Sbjct: 351 GQMELSVSDTGPGIAPDQVKSIFERFSQLDDSVGRQHEGAGLGLTIAQEIAVLAGGDIGV 410 Query: 459 RSKLREGVEVIAILPNTRVLNF 480 S+L G LP+ V Sbjct: 411 ESELNAGSRFWVRLPHRPVKPA 432 >gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC 35469] gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia fergusonii ATCC 35469] gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253] gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ECD227] Length = 918 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLTIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|16125173|ref|NP_419737.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221233906|ref|YP_002516342.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|13422191|gb|AAK22905.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220963078|gb|ACL94434.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 586 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 106/449 (23%), Positives = 175/449 (38%), Gaps = 27/449 (6%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 +K D + + ++ +R++ + LVA I + I W L L Sbjct: 5 AKAWSDERLDEVAADT-YRLTLSRLISAALVAVIMVFALGPAIATGWLLSLYIGEGLALL 63 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + ++ + W I I + WT L ++ + Sbjct: 64 VTRRFKDGRTGTPRERAW---FAWASIPINISWTTLAILLWLHGEDLMKIAAVAIWCGQV 120 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + + P+ L + L Sbjct: 121 IYTQNFRHQSAALLLLNGLTPMASLLIFPFFFMPDASAAAQTARWGLVLLVG-------- 172 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 L+ + ++ E R++A E AKS F+A SHELRTP+N +L Sbjct: 173 ----TTLNVMIQNRAAARRMDELTRGLREEREKALEAARAKSTFIAVTSHELRTPMNGLL 228 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ T+ P+ +E I + +SG L+ L+N++LDLSR+E G+ EL+ +SL Sbjct: 229 GMAHALQRSTLDPV----QREQIALMIKSGDSLMQLLNDVLDLSRVETGKVELAPIDMSL 284 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 D+V E + + A KN+ + P L V AD +RQV+ NL+SNA+KFT GG Sbjct: 285 QDLVGEVVDAWRDAAVFKNLSLSVDYAPDLPPGVHADPLRIRQVVTNLVSNAIKFTVDGG 344 Query: 388 RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V + I++ D GPG+ + V SF Q I G GLGL Sbjct: 345 -VRLEVAARPANGGDQRVSITVADTGPGVPADAMERVFDSFTQADQTISREHGGAGLGLS 403 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 IA+++ GG ++ G + Sbjct: 404 IARALARQMGGDLVLVPS-GRGACFVFTF 431 >gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] Length = 916 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L + V P+ + + LD+ + G Sbjct: 164 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 218 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 333 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503 >gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116] gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116] Length = 932 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + SG + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q +++ GG+ + S+L +G Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513 >gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 804 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 99/523 (18%), Positives = 195/523 (37%), Gaps = 40/523 (7%) Query: 5 RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGT 64 + + L L L + M + + + + + + V Sbjct: 153 ESEENFNFTKLFRAILFGLTLGFGIAMGLYNFSLYMFFRTRSYLYYFIMILFSTVYLASW 212 Query: 65 -----WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + + L ++ + + + + ++ + + L Sbjct: 213 DGLISPLFKPNYGRYYLPFILVLFYTSALFLFLFSMEFLYPEKKERYVKIIIFLYVVVNL 272 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISA-------------LSNFMLPYAVF 164 L+ L ++ Y L+I + + + P A Sbjct: 273 L--LIPLSIFYPTHLNRISYYLGLVNNLIIVYFCIVRIRGGFKSAKNFLIIHLVFPVAGI 330 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L+ A+S + + ++ + ++ I F+ + S + L Sbjct: 331 LTNLSTFGAISIDYLSLHLLKLAFISQSVLFSVMLVQRIKELEFRLKDGLQSEIHKNIVL 390 Query: 225 IAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + + ++ + ++ AE+ + KS FLA+MSHE+RTP+N +LG +++ + Sbjct: 391 LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL- 449 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N+ KEY+ + S + LL +IN+ILD S+IEAG+ L S+ ++ E +L Sbjct: 450 ---NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLY 506 Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--- 396 A++K I + + V+ D +RQ++ NL N +KFT+ G V + V Sbjct: 507 PLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSR-GEVVLKVTQKNIS 565 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S ++ D+G GI + V +F Q + G GLGL I + ++ GG Sbjct: 566 KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGV 625 Query: 456 FLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHESTQYKCY 494 + SK EG + +P+ + I E K + Sbjct: 626 LKLESKDGEGSKFTFTIDYDIPSALEIEKILEAEKTKDLEKSF 668 >gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli 2362-75] gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli 2362-75] Length = 918 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32] gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32] Length = 1688 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 142/257 (55%), Gaps = 10/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E++ +E ++RA+ + AKS FLA+MSHE+RTP+NAI+G S + +G ++N Sbjct: 1065 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1120 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI +HRSG LL++IN+ILD S+IEAG+ + + ++ I +++ +A Sbjct: 1121 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1180 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK + + IDP L + + D + QVILNL+ NA+KFT G V +TV + Sbjct: 1181 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTET-GSVSLTVALVESDDNSL 1239 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI++ + + +F Q G GLGL I+Q ++ GGQ + Sbjct: 1240 TMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVG 1299 Query: 460 SKLREGVEVIAILPNTR 476 S +G E +L +R Sbjct: 1300 SVFGQGSEFSFVLTLSR 1316 >gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] Length = 587 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + ++ I + Sbjct: 354 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--HDQAALSAFLDIILKESDR 411 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS+ E + LS + L ++ EC+ +L +A++K I+I Sbjct: 412 LQSLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGW 471 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D ++QV +NLL+NA+ +T GG++ V++ + +KD G GI + EIP + Sbjct: 472 IKGDPHRLKQVFINLLTNAITYTPQGGKISVSLE-EKEDKVQVEVKDTGMGIDQDEIPRI 530 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ H G + S++ +G L Sbjct: 531 FERFYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKVQL 582 >gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] Length = 916 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 7/293 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L+ I ++ AE+ +L + + + K FLA+M Sbjct: 835 LATQLAIAIQQASLVEQLQQELAERQQAELKLTQSNQQLAISNQELARATRLKDEFLANM 894 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILG +E ++ G +N++ +K + I RS HLL+LIN+ILD+++IEA Sbjct: 895 SHELRTPLNAILGMTEGLQEGVFGMINDKQFK-ALETIERSSSHLLDLINDILDVAKIEA 953 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ +L +AIS+ + + ++ ++ +A +K I++ KI +L ++ DE+ +RQV++NLL Sbjct: 954 GQIKLDCTAISVAALCQSSLVFIKQQALQKRIQVEIKIPLNLPDLFVDERRIRQVLINLL 1013 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +NAVKFT GR+ + V S I++ D G GI + I + F Q A Sbjct: 1014 NNAVKFTPETGRISLEVTQVSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSA 1073 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + +G GLGL + + I+ HGG+ + S+L G LP T PE Sbjct: 1074 LNRQYEGTGLGLALVKKIVELHGGRVGLTSELGVGSCFTIELPCTPSTPSSPE 1126 >gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863] gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509] gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli STEC_7v] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1233 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 140/270 (51%), Gaps = 11/270 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + ++ + I A++ + ++ AE + AK FLA+MSHE+RTP+N I+ Sbjct: 563 RDSNGRVTRMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGII 622 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +E+ + N +EY+G + S LL ++N+ILD S+IE+G+ ++ SL Sbjct: 623 GMTELALDTEL----NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSL 678 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++RE + L +RA +K +E+ + P + + D +RQVI+NL+ NA+KFTA G Sbjct: 679 EHMLRETMKSLAVRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTAS-G 737 Query: 388 RVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + V V G S++D G GIA + T+ SF Q + G GLGL Sbjct: 738 EIEVDVQCLKGAPEGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGL 797 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+ +++ GG + S++ +G L Sbjct: 798 TISAQLVSLMGGSIALESEVGQGSNFYFTL 827 >gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 917 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 131/269 (48%), Gaps = 8/269 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + + AE N AKS+FLASMSHELRTPLNAI+G+SE++ E Sbjct: 397 ITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPLNAIIGYSEMLIEEARDHKEE 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I +G+HLL LIN+ILDLS+IEA + ++ SL +++R+ + Sbjct: 457 ELVPD-LDKIASAGRHLLTLINDILDLSKIEANKMDVFLETFSLAELLRDVAATVAPLMA 515 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 Q + L + +D+ +RQ + NLLSNA KFT GGRV + V Sbjct: 516 RNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKFT-KGGRVILRVRREQRAEHDWL 574 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G+ + + +F Q + G GLGL I +S GG + S+ Sbjct: 575 VFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGLSITRSFCRLIGGVVTVESE 634 Query: 462 LREGVEVIAILPN---TRVLNFIPEDNHE 487 +G +P + V PE + Sbjct: 635 AGKGSVFTMEVPAKCESEVDRPPPEQAAQ 663 >gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1025 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 138/255 (54%), Gaps = 11/255 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 ++I + ++A+ + +++AE AK++FL++MSHE+RTP+NA++GF+ ++ Sbjct: 623 EIITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQN----- 677 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E EY+ + SG++LL LIN+ILD S+IEAG+ E +L D+VR +Q R Sbjct: 678 PREDQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQR 737 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A EK I++ +D L V D + Q++ NL+SNA+KFT++ G+V V+ S + Sbjct: 738 AIEKGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSV-GKVVVSASLVSRNNE 796 Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Y +KD G GI + + SF Q S G GLGL I + ++ G Sbjct: 797 YTIVSFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQ 856 Query: 458 IRSKLREGVEVIAIL 472 + S+ +G L Sbjct: 857 LDSEPGKGSTFSFNL 871 >gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27] gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27] Length = 916 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503 >gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1075 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 143/273 (52%), Gaps = 10/273 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 ++ + A+ + + RK+AEE +LAK RFLA+MSHE+RTPLNAI+G ++ ++ Sbjct: 548 RDVSNKKKAQKVLIQARKKAEESSLAKERFLANMSHEIRTPLNAIIGMQRLLSKTSL--- 604 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + Y+ I S +LL +IN+ILD+S+IEAG+ EL L ++R + L + Sbjct: 605 -EERQQRYLDAIGTSADNLLVIINDILDISKIEAGKLELENVGFDLCKLIRHLVFTLGYK 663 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A+EK I ++ ID ++ V D + Q++LNLL+NA+KFT + G+V ++ Sbjct: 664 AEEKGIGLYANIDDNMHPIVLGDSVRLHQILLNLLNNAIKFTDV-GKVIISTSLVEANPD 722 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D G GI I V SF Q +I G GLGL I + ++ GG+ Sbjct: 723 TQTVCFEVSDTGRGIKAENIEAVFESFTQEDASITRKFGGSGLGLAIGRQLVELFGGKLT 782 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ +G L + HE TQ Sbjct: 783 VTSEYSKGTTFSFTLTFKKETLDAIAPVHEVTQ 815 >gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] Length = 883 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 9/273 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + L + E +L ELE + AE + AKS FLA+MSHE+RTP+ Sbjct: 442 QVRDLALNELKDRTENLELTRRELEEKAERLKQANTDAEAASRAKSEFLANMSHEIRTPM 501 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 A+LG+++++ E+ G + + I R+G +LL LIN+ILDLS+IE+G + Sbjct: 502 TAVLGYTDLLIEESWG---RPGSIQLLDVIKRNGHYLLELINDILDLSKIESGNLTIETI 558 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 SL++ ++E ++++RA+ + + + +L + +D ++Q+++NL+ NA+KF+ Sbjct: 559 QFSLLEKMKEIQSLMKVRAELRGLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFS 618 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG+V V + + I D G G+ +I + F Q + G G Sbjct: 619 PDGGKVSVETSFLNSSADNPLLEFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTG 678 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I++ + GG S EG + Sbjct: 679 LGLAISKRLAEMLGGDLTCESVPGEGTVFTLTI 711 >gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25] gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25] Length = 932 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G V V + SG + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q +++ GG+ + S+L +G Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513 >gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 587 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+A++SHELRTP+ +I GF+E + M + ET + ++ I + Sbjct: 358 RRLE---KMRSEFVANVSHELRTPITSIKGFTETLLEGAM--QDEETCRNFLQIISDESE 412 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L +I +ILDLS+IE R L + L D++ + ++ +AQ K + I Sbjct: 413 RLYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDI 472 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D+ ++Q+ILNLL+NA+ +T GG++ + S I + D G GI E E+ Sbjct: 473 WLMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTEADSEN-ITIQVMDTGIGIPEKELTR 531 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + A G GLGL I + ++ N G + SK G LP Sbjct: 532 IFERFYRVDKARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTTFTVTLPL 586 >gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536] gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli F11] gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536] gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli F11] gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] Length = 927 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL KS FLA+MSH Sbjct: 624 WVLSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSH 683 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + ++ K+Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 684 EIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGK 739 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL L ++ + + L+AQE+ +E+ + + D + QV++NLLS Sbjct: 740 LELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLS 799 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + + +F Q + Sbjct: 800 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTR 858 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG+ ++S+L G + Sbjct: 859 KYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 897 >gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 927 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L + V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 600 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 6/238 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++ E N+ K F+A++SHELRTPL +I ++E + + + E +++ I+ Sbjct: 367 EQQKLE--NMRK-EFVANVSHELRTPLTSIKSYAETLLDGAL--EDRELAGKFLSVINSE 421 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ ++L LSR++ + + IS D+VR C+ ++ ++EKN + Sbjct: 422 ADRMTRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGE 481 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + AD+ M QV+LN+L+NA+K+T GG++ V +G Y+ + D+G GI ++ Sbjct: 482 ELEIVADKDRMEQVVLNILTNAIKYTPEGGKITVYIGRMYS-EVYVKVVDSGIGIPREDL 540 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL IA+ I+ H G + S+ +G EV LP Sbjct: 541 GRIFERFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLPAA 598 >gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +++ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 611 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 7/253 (2%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I + V + ++++ + A ++ F+A++SHELRTPL I ++E +E M + Sbjct: 360 IIGTIAVLQDVTEQEKLEA-----SRREFVANVSHELRTPLTTIKSYTEALEDGAM--ED 412 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E ++ I + ++ L+ ++L LSR ++ EL + ++++++ + + + Sbjct: 413 PELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQM 472 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 QEK I+ I + + W D + QV+ NL+SNA+K+T GG + + T R I Sbjct: 473 QEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAI 532 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D G GI + ++ + F + A G GLGL IA+ I+ HGG ++S+L Sbjct: 533 SVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELG 592 Query: 464 EGVEVIAILPNTR 476 +G +V LP + Sbjct: 593 KGTKVTFTLPAEK 605 >gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str. E2348/69] gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O127:H6 str. E2348/69] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 993 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I +E K + R AE N AKS FLA+MSHE+RTPLNA+LGF++V+ + Sbjct: 288 EDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNG 347 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +++ IHRSG HLL LIN+ILDLS+IE+G + SL DIV + L+++ Sbjct: 348 DEAV--DHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVK 405 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A E+N+ + ++ + +D +RQV+ NL+ NA+KFT G + ++ T Sbjct: 406 ADEQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNA 465 Query: 401 -------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + I D G G+ + + SF Q + G GLGL I++ + G Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMG 525 Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493 G + S++ G LP + PE+ Q K Sbjct: 526 GSLTVHSEVGIGSTFRVELPTSIASLQDMVSPEELARLAQEKS 568 >gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 918 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6] gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus CMCP6] Length = 928 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + G +KD G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSIDLQFMVKDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 956 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 ++ + I + + + +E+ D RK A E + KS FLA+MSHE+RT Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+GF+E++ + ++++ I +S + LL +IN+ILD S+IEAG+ L Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLNTIRKSSEILLTIINDILDFSKIEAGKLILD 361 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 L DIV E ++ML A KN+++ + ++ D ++QVI NL++NA+K Sbjct: 362 RVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421 Query: 382 FTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 FT G V + +SI D+G G++ + ++ +F Q + Sbjct: 422 FTQT-GEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG+ + S+L +G L Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517 >gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114] gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system with GacA [Vibrio fischeri ES114] Length = 931 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 145/279 (51%), Gaps = 8/279 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 239 AMAISLSEYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + ++ +E ++Y+ I RS +LL +IN+ILD S++EAG Sbjct: 299 HELRTPLNGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAG 354 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L D + E + +L A EK +EI KID + S + D ++QV+ NL+ Sbjct: 355 KLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLV 414 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + V + + ++D G GI+E + + +F Q +I Sbjct: 415 GNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISR 474 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q +++ GG+ + S+L +G + Sbjct: 475 RYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTI 513 >gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1373 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 17/265 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + ++ + AE N AKS FLA+MSHELRTPLNAILGFS+++ P Sbjct: 877 ITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNR---DPSLT 933 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I+ SG+HLL LIN ILDLS+IEAGR L+E++ L ++ ML L+ + Sbjct: 934 SEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVE 993 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396 K + + + D ++ + DE +RQV++NLL NA+K+T GG V + V Sbjct: 994 TKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGG-VSLKVKQQSYPLEKS 1052 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + D G GI+ EI T+ +F Q + KS QG GLGLPI++ + GG Sbjct: 1053 PETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQ-QGTGLGLPISRKFVQMMGGD 1111 Query: 456 FLIRSKLREGVEVIAILPNTRVLNF 480 +S+L G L RV+ Sbjct: 1112 IRAKSELGTGTSFEFNL---RVIPT 1133 >gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli 1180] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 637 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 152/354 (42%), Gaps = 3/354 (0%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 ++ EP + ++A + + ++ + L F + + ++ Sbjct: 280 VIMFYEPVKTGNYSFILVVPKDEMLAGVTALRNKLIIVSVIALFFMGGLGYMIALSVTKP 339 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + ++ + + V ++++ L+ + + Sbjct: 340 IEDIVDDFKHISDGALHGKLDSRADTEVEVDFKEIPVGLNEILDALKKNSDELRKANEEL 399 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + K FL+++SHEL+TPL I G++E++ MG LN E E + R+ + L Sbjct: 400 KSLDRMKDEFLSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQI-EVQNKVVRNAERLK 458 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L++ +L LS+I+A E + + +I+ + +++ A K IE+ ++ L + Sbjct: 459 RLVDSLLYLSKIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGIELEMNLEEDLPKIN 518 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + +I N++ NA+KFT GG+V VT + +I +KD G GI E I + Sbjct: 519 GDKDKLTDMITNIVDNAIKFTPSGGKVTVT-SFKKEGDIHIVVKDTGIGIPEDMIDNLFQ 577 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 F Q + G GLGL I+ +I H G S+ +G E+ +P + Sbjct: 578 RFYQLDASRTRKYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEMHIEIPIS 631 >gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 927 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. Sakai] gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. MG1655] gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073] gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046] gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197] gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. W3110] gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A] gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS] gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4113] gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4401] gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4501] gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4486] gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4196] gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4076] gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC869] gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC508] gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739] gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. DH10B] gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5] gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94] gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli 53638] gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli B7A] gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli E110019] gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli B171] gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli 101-1] gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. EC4024] gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4206] gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4045] gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4042] gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4115] gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11] gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. TW14588] gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1] gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026] gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972] gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BW2952] gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43] gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. TW14359] gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9] gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B] gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O103:H2 str. 12009] gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O26:H11 str. 11368] gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. FRIK2000] gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. FRIK966] gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli O55:H7 str. CB9615] gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412] gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli B354] gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185] gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088] gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302] gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101] gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 1617] gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli 1827-70] gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA143] gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA271] gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA280] gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli H591] gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli H299] gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response regulatory system with UvrY [Shigella sp. D9] gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073] gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli] gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. MG1655] gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai] gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei Ss046] gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197] gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K12 substr. W3110] gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli HS] gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli E24377A] gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. DH10B] gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli SMS-3-5] gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii CDC 3083-94] gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4196] gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4113] gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli 53638] gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4076] gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4401] gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4486] gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4501] gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC869] gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC508] gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli B7A] gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli E110019] gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli B171] gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli 101-1] gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4206] gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4045] gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4042] gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4115] gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli] gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli] gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli] gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli] gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli] gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11] gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. TW14588] gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli IAI1] gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli UMN026] gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43] gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972] gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BW2952] gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. TW14359] gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O26:H11 str. 11368] gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O103:H2 str. 12009] gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli O55:H7 str. CB9615] gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088] gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412] gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185] gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli B354] gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302] gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101] gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972] gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 1617] gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli ETEC H10407] gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli 1827-70] gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1] gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli 3431] gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. EC1212] gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B] gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. G5101] gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. 493-89] gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. H 2687] gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str. USDA 5905] gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. LSU-61] gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli EPECa14] gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli E128010] gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei 53G] gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli 1357] gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli RN587/1] gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520] gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120] gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489] gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007] gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167] gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. 1044] gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. 1125] gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA143] gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA271] gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA280] gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli H591] gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli H299] gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii 3594-74] gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response regulatory system with UvrY [Shigella sp. D9] gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli UMNK88] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 675 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 176/408 (43%), Gaps = 19/408 (4%) Query: 74 MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT 133 +W + + + L ++ + ++ L W G Sbjct: 109 LWIVSSYMQAVSLLIAPVFLVRKLWAEKVFLTYFALTAALLASVFLGW-FPECYVEGVGL 167 Query: 134 PEYLTIYKSATLLIALSISALSNFM----LPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 + + LI ++ +A + PY +V+++ +++V + Sbjct: 168 TPFKVWSEYIISLILVAAAAFLHLRRQNFAPYVYGYLLASMVLSVIAHLAFTLYVDVYGI 227 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 +L L +Y F + S + D L EL + ++ AE + AK Sbjct: 228 LNVLGHVLKVGSYF---FFYKALVETSLRRPLDFLFWELAQQREELTLAKEEAERASRAK 284 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTP+N +LG S + + + +E + + +SG++L+++IN+IL Sbjct: 285 SEFLANMSHEIRTPMNGVLGMSRL----ALDMSSEAQVRECLELVRQSGENLMDIINDIL 340 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IEAG+ + + L + LQ+ A ++ + +DP++ + D + Sbjct: 341 DLSKIEAGKIDFQHTNFDLGQTLEATFKPLQIMAAQRGLAFESDLDPAVPVQLLGDPGRL 400 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 RQV+ NL+ NA+KFT GG + V V T ++D+G GI ++ + S Sbjct: 401 RQVLTNLIGNAIKFTRKGG-IKVKVALQGQQETESACLLFEVRDSGVGIPADKLDRIFES 459 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q A + G GLGL I++ ++ GG + S++ +G Sbjct: 460 FSQVRHAPDLEQGGTGLGLAISKELVRMMGGGIQVESEVGKGSTFSFT 507 >gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220] gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220] Length = 811 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 70 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 126 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 127 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 183 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 184 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 239 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + + +L + +K +E+ I + V D Sbjct: 240 DVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 299 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QVI NL+ NA+KFT GG + + V + + I+D G GI E + + Sbjct: 300 LRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLF 358 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 359 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 409 >gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus MO6-24/O] gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus MO6-24/O] Length = 928 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + G +KD G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227] gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli E22] gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli E22] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 1109 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ E + A+ NLAKS FLA+MSHE+RTP+N ++G + ++ + P Sbjct: 845 ITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTTDLTP--- 901 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ +I S L LI++ILDLS+IE+G+ L +A SL +++ + Q Q Sbjct: 902 -EQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFIQ 960 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K I + +I L ++ D+ RQ++LN+L NA+KFT G++++ + I Sbjct: 961 QKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQ-GQINIVAELVEQHDRDI 1019 Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G G++E + F Q + G GLGL I + + GG+ + Sbjct: 1020 HVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVE 1079 Query: 460 SKLREGVEVIAIL 472 S+ G L Sbjct: 1080 SREGAGSCFYIEL 1092 >gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236] gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236] gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 927 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + E + + R AE AKS FLA+MSHE+RTP+N+I+GF +++ Sbjct: 911 VECMRNVTERRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSAD 970 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + +EY+ + S LL++I +ILD S+IEAG++ L L ++ + M Sbjct: 971 LDS----AQREYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNM 1026 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + ++A+ K I+ + P + + D + QV+ NL++NAVKFT G V++ V Sbjct: 1027 VSVKAESKGIDFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDR-GEVNLIVTCEE 1085 Query: 398 ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++D+G G++ E+ + SF Q + G GLGL IA+S++ G Sbjct: 1086 NCTGEASIKFIVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMG 1145 Query: 454 GQFLIRSKLREGVEVIAI 471 G + S EG Sbjct: 1146 GTVSVESHPGEGSSFYFT 1163 >gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 664 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 1/302 (0%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 A ++ + + AT + L + + +A+ + L Sbjct: 364 ADGRIFLIRERLTADGGVVITATDATDLKVKEQTLEAQVQALHAARADAEQHAEHLARMT 423 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + ++RAE + KS+FLA+MSHELRTPLNA+LGFSE+++ E GPL + YKEY Sbjct: 424 DMLTREKERAEAASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYAD 483 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 DIH SG HLL+LIN+ILD+S+IEAG+Y L + +L I+ M++ RA E ++ + Sbjct: 484 DIHASGHHLLSLINDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQV 543 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 ++ V D + ++QV++NLL+NA+ FT GGRV + V G + + DNG GI Sbjct: 544 ELPDPALVVNVDVRAIKQVLINLLANAITFTPAGGRVRLGV-RVHDDGVAMYVADNGIGI 602 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E E+P +L F Q A + +G GLGL ++ +++ H G + S++ G V L Sbjct: 603 PEEELPRLLRPFEQIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRL 662 Query: 473 PN 474 P Sbjct: 663 PA 664 >gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 822 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 99/523 (18%), Positives = 197/523 (37%), Gaps = 40/523 (7%) Query: 5 RKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA---- 60 + + L L L + M + + + + + + V Sbjct: 171 ESEENFNFTKLFRAILFGLTLGFGIAMGLYNFSLYMFFRTRSYLYYFIMILFSTVYLTSW 230 Query: 61 -NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + + + + L ++ + + + + ++ + + L Sbjct: 231 DGLISPLFKPNYGRYYLPFILVLFYTSALFLFLFSMEFLYPEKKERYVKIIIFLYVVVNL 290 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISA-------------LSNFMLPYAVF 164 L+ L ++ Y L+I + + + P A Sbjct: 291 L--LIPLSIFYPTHLNRISYYLGLVNNLIIVYFCIVRIRGGFKSAKNFLIIHLVFPVAGI 348 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L+ A+S + + ++ + ++ I F+ + S + L Sbjct: 349 LTNLSTFGAISIDYLSLHLLKLAFISQSVLFSVMLVQRIKELEFRLKDGLQSEIHKNIVL 408 Query: 225 IAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + + ++ + ++ AE+ + KS FLA+MSHE+RTP+N +LG +++ + Sbjct: 409 LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL- 467 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N+ KEY+ + S + LL +IN+ILD S+IEAG+ L S+ ++ E +L Sbjct: 468 ---NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLY 524 Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--- 396 A++K I + + V+ D +RQ++ NL N +KFT+ G V + V Sbjct: 525 PLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSR-GEVVLKVTQKNIS 583 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S ++ D+G GI + V +F Q + G GLGL I + ++ GG Sbjct: 584 KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGV 643 Query: 456 FLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHESTQYKCY 494 + SK EG + +P+ + I E K + Sbjct: 644 LKLESKDGEGSKFTFTIDYDIPSALEIEKILEAEKTKDLEKSF 686 >gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-272] gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-227] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + +++ E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLVAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O111:H- str. 11128] gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O111:H- str. 11128] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 762 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 11/282 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + + + + + + L K++ A++ + + + A+ N AKS+FL +MSH Sbjct: 196 FSSILIFAVISALIIYLLILKRKEEYEAQMRQ---ILRQALESAQTANAAKSQFLFNMSH 252 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ++RTP+NAI+G + + + + ++Y+ I S +HLL LIN++LD+S+IE G+ Sbjct: 253 DIRTPMNAIIGMTTLAL---IHLNEPQKIRDYLVKISSSSKHLLELINDVLDMSKIENGK 309 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L++ L +++ ++ +A +++ + D V D + Q++LN+ N Sbjct: 310 IALNDEEFVLPELIEHFCTIILQQAHTRHLTLDINTDLIHEKVTGDTLRINQMLLNIAGN 369 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A+KFT GG++ + + + I D G G+ I + F + +I + Sbjct: 370 ALKFTPAGGKIDIQIRELPPQYAGYGTYQFIISDTGIGMPADFIEKIFEPFERAHNSIGN 429 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +G GLG+ I ++I+ G+ + S+ +G +P Sbjct: 430 KIEGTGLGMAITKNIVDMMNGRIDVESEPGKGTTFTVTVPLK 471 >gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae 1012] gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae 1012] gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 155-74] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 577 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TPL +I GF+E + E ++++ IH + + L Sbjct: 350 LEQMRKDFVANVSHELKTPLTSIKGFAETLLDGAQDV--PEIREQFLNIIHDESERMQTL 407 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L+LSR+E Y+L + + + ++ E +LQ +A EK + I + + + + AD Sbjct: 408 VEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEV-FIRAD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV++NL++NA+ +T GG V +++ + IKD+G GI E+ + F Sbjct: 467 LNRLKQVVVNLVANALNYTPNGGNVWISLE-DGEEAVMLRIKDDGIGIHPKEMQRIFERF 525 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + A G GLGL I + I+ H G + S+ +G LP Sbjct: 526 YRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPKK 576 >gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 932 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 25/349 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + SG + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q +++ GG+ + S+L +G Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 155/386 (40%), Gaps = 20/386 (5%) Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA----------LSNFMLPYA 162 G L+ L EP T L + A + A S L Sbjct: 294 AVALTGSADGLIALFEPARETFRLLAAHPGALSAFGMPPGAQSFDARRIEPFSTAWLSQQ 353 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 +S P V + Q++ ++ L ++V L E Sbjct: 354 PVISNTPPTVPEA-QSLPWRSLVVPVEGEGENRLLIVVIDKDEPYDDADVHRLILLGEGV 412 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + RK+AE + AKS FLA+MSHE+RTPL+ I+G +++ T+ Sbjct: 413 LGHVKDRARERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQM----TLSQT 468 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E++ I S + LL ++N+ILD S+IEAG+ E S L +I+ + Sbjct: 469 PRPEVREHLELILDSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFS 528 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 +++K + + +I L + D + QV+ NL+ NA+KFT G V V Sbjct: 529 SRQKGLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDK-GEVAVEFRLLRPGDP 587 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI E +P + F Q + G GLGL I++ ++ GG + Sbjct: 588 MLVECSVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGV 647 Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484 RS+ +G + E Sbjct: 648 RSRPGQGSVFSFTVSLRPAQEECSEA 673 >gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] Length = 927 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] Length = 1088 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 17/334 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L F V + + +++ + + + + ++ + Sbjct: 306 AAQVQEASLQFLIVTLTIWLVSLILATLGYFLSNEITRNIKNLEDVLKRVAEDTSDEDDE 365 Query: 217 CQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 A L + E ++ A+E + AKS FLA+MSHE+RTPLN I+G Sbjct: 366 TAVINLQTADGTAQAYDLLEKIIAQTREDKESAQEASEAKSMFLANMSHEIRTPLNGIVG 425 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F+E+++ +G E E++ I +S ++LL +IN ILDLS+IE+ + E+ + + I Sbjct: 426 FTELLKDTGLG----EEQHEFVEIIEKSSENLLEIINNILDLSKIESNKLEIEDIVFNPI 481 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 D + + +RA EK+I++ IDP+L + D ++++I+NLLSNAVKFT+ G Sbjct: 482 DEFESAVEVYAVRASEKHIDLGCFIDPTLEHPLKGDPTKIKEIIINLLSNAVKFTSSAGS 541 Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 ++V + ++D+G G+ + + +F Q +I G GLGL Sbjct: 542 INVDIRRVECDQDGKTRVRFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLT 601 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 I+ + GG+ + S+ G + V Sbjct: 602 ISSRFVELMGGELDLHSETGSGTTFFFTIDFEEV 635 >gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50] Length = 583 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 13 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 69 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 70 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 126 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 127 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 182 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 183 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 242 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 243 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 302 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 303 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 352 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 140/255 (54%), Gaps = 9/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A++ + A++ N AKSRFLA+MSHE+RTP+N ++G +++ + + Sbjct: 942 ITDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRETNL----S 997 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I S LL +IN+ILD S+IE+G+ EL + ++++++V + + L + A Sbjct: 998 RDQVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAH 1057 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRG 400 +K++ ++ +++ +L + D RQV+LNLL NA+KFT G V V VG+T Sbjct: 1058 QKDVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTE-GE 1116 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I+++DNG G+ + ++ + F Q + G GLGL I++S + GG+ + S Sbjct: 1117 LRIAVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTS 1176 Query: 461 KLREGVEVIAILPNT 475 K G +P Sbjct: 1177 KHHHGSRFTFTIPVE 1191 >gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 919 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISGVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L + +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +QVI NL+ NA+KFT G + V S I + +D G GI E + + +F Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516 >gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 16/262 (6%) Query: 224 LIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 +I E + S E ++ AE+ + AKS FLA+MSHE+RTP+N +LG +++ + Sbjct: 163 MIKRKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTEL 222 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G + + + RS LL L+N+ILD SRIEA + L V + +L Sbjct: 223 G----DEQRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEIL 278 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A+ K + + ++ P + +V DE +RQV++NL+ NAVKFT G+V VT Sbjct: 279 AFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDR-GKVEVTAARAER 337 Query: 399 RG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + IS++D G GIA E + F Q A G GLGL + + I+ Sbjct: 338 QSDPLRTAIRISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAM 397 Query: 453 GGQFLIRSKLREGVEVIAILPN 474 GG + S+ +G +P Sbjct: 398 GGAIDVESQSGQGSTFTITIPL 419 >gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 975 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 159/305 (52%), Gaps = 5/305 (1%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + +++ + L FF + +++++ + + E + A+ + Sbjct: 407 LRAGFGFPVTVGREVVAVLEFFACDAPPPDPALLRVMTNIGAQLGRVIERKRAEESLRQA 466 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ + AKS FLA+MSHELRTPLNAI+GF+ ++ L + + E + I S Sbjct: 467 KEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKEALPTKQF-ENLEKILASS 525 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL+LIN ILDL+++EAGR E+ S +L ++ C+ ++ + + + + + ++ Sbjct: 526 EHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVEPLIKSEGVRLVRDVEDPP 585 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + + DE+ +RQ+++NLLSNA+KFT G V + V ++G ++ D G GI + + Sbjct: 586 TMLRTDEEKLRQILINLLSNAIKFTEA-GSVTLRV-RSAGEHVEFAVTDTGIGIPQEALS 643 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F Q + + G GLGL I+ + GG + S++ +G +P + Sbjct: 644 AIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVESRVGQGSTFTLSIPPR--I 701 Query: 479 NFIPE 483 PE Sbjct: 702 AGAPE 706 >gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016] gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 928 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMQDV---TQPITHMKNVVDRIRRGQLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKNGINAMAISLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + G +KD G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4] gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4] Length = 464 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 11/303 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + ++ L + L+ L + + N Q D+L + A+++ Sbjct: 167 AIGSLFLGIGLTYFITKKLSQPLVSMEKAARQIARGNYNTRIIQKSGDELGSL---ARAI 223 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +D + N + F A++SHELRTP+ + G+S+V+ E +Y+ I Sbjct: 224 NDLA-FSLQRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRW--KTEEERNQYLEII 280 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK- 353 L L++++ DL+++E GR+ L +++ +I++ + +A E+N++I + Sbjct: 281 DHEATRLTYLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRG 340 Query: 354 --IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 D S V D + QV++NL+ NA+K+T G + + ++ I ++D G G Sbjct: 341 GLSDKDDSIVLGDPLRLEQVLINLVENAIKYTKE-GSITIYT-VSNDENIKIKVRDTGIG 398 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + E E+P + F + + A G GLGL I + ++ H G + S + EG E I Sbjct: 399 MEEEELPYIFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTII 458 Query: 472 LPN 474 LP Sbjct: 459 LPK 461 >gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli 042] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str. REL606] gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli B str. REL606] gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BL21(DE3)] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1019 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +E KRAE N AKS FLA+MSHE+RTP+NAILGF ++++ G + ++ + Y+ Sbjct: 522 ALEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDA 577 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I G+ L++LI++ILDLS+IEAG+ EL + L +++E + A K + + Sbjct: 578 IAAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQIN 637 Query: 354 IDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDN 408 +P++ + A DE +RQ++ N++ NA+KFT G + V + I + D Sbjct: 638 FEPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADT 697 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + +F Q G GLGL I + + GG + S+L G Sbjct: 698 GIGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVF 757 Query: 469 IAILPNTRVLNF 480 P+ ++ Sbjct: 758 TFTFPDVQITQS 769 >gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] Length = 883 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ ++ E +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 643 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 698 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ + + LL LI++ILDLS+IEAG ++ +E + + + + ++ ++++A+ Sbjct: 699 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 758 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+EI + +D + QVI N ++NA+KFT G + V Sbjct: 759 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 816 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + F + S G GLGL I +SI+ GG+ + S+ + Sbjct: 817 VADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 872 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 873 GSCFWFTLPIK 883 >gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 EDL933] gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia coli O157:H7 str. EDL933] Length = 918 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 928 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 133/261 (50%), Gaps = 12/261 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + E ++ + + AE AKS FLA MSHE+RTP+N+ILG SE++E + Sbjct: 258 VECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEETS 317 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + K Y+ +H SG+ LL +IN+ILD S+IEAG+ +L LID+V + Sbjct: 318 LDF----DQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRI 373 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 L L+AQEK +++ + P + V D ++Q+++NLLSNA+KFT G V + + Sbjct: 374 LGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFT-EHGEVTLHILPGP 432 Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +++ D G GI + + +V SF Q + G GLGL I++ ++ Sbjct: 433 LPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMD 492 Query: 454 GQFLIRSKLREGVEV--IAIL 472 G I S G L Sbjct: 493 GGIRIESNEGAGTTFLLTVRL 513 >gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395] gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] Length = 927 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 16/370 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFF---PVVVAL 174 L W L L GT Y +++ S L+ L+++AL + ++ V L Sbjct: 148 LGWVELELSHQGTLLSGYRSLFASLLLIAGGLAVTALLALRMSRSINGPLREIKAGVAQL 207 Query: 175 STQAIMSMHVL--DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + + + + A + + I + + +E+ Sbjct: 208 KDGHLQTRLPPLGSHEMDELAAGINRMAEALQNAQEELQHSIEQATEDVRQNLETIEIQN 267 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P ++Y+ Sbjct: 268 IELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLS 323 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351 I +S LL +INE+LD S+IEAG+ L +L D++++ + +L A EK +E+ Sbjct: 324 TIEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVS 383 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408 + ++ D ++QV+ NL+SNA+KFT G V V T IS+ D Sbjct: 384 LIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDT 443 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 GIGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 503 Query: 469 --IAILPNTR 476 LP R Sbjct: 504 WITLTLPKAR 513 >gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] Length = 1343 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 10/270 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + +S + +A E + AK FLA+MSHE+RTP+NAILG S + L + N Sbjct: 572 VTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDL----N 627 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + Y+G+I ++G+ LL +IN+ILD S+IEAG+ + +++ ++ ++A+ Sbjct: 628 DKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAK 687 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ IDP+L + D + Q+I+NL N+VKFT G + + + + I Sbjct: 688 EKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFT-ESGEIIIRARKVTDVNEII 746 Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+ D G G+ E ++ + SF Q +I G GLGL I++S + GG+ + Sbjct: 747 EIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVE 806 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S+ +G + R + I E ++T Sbjct: 807 SQPGKGSTFSFTIRCGRSNSSIKEQIAKTT 836 >gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 927 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 568 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 4/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL I + E + ++ E K ++ I + L Sbjct: 342 LDAMRKEFVANVSHELRTPLATIKSYVETLL---YSDVDAEYLKRFLKIIDSETDRMTRL 398 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS++++ L +L +++ + I L + A +KN ++ + V+ D Sbjct: 399 VKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYID 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + M QVI+NL++NA+K+T G + V + ++DNG GI + ++P + F Sbjct: 459 KDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENFATFIVEDNGIGIPKEDLPRIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + A G GLGL I + I+ H G+ I S++ +G V LP Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 639 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 161/362 (44%), Gaps = 20/362 (5%) Query: 117 IGLCWTLLTLVEPGTWTPEYLTIY---KSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 G +L + P + A LI L I+ + ++++ + Sbjct: 291 NGKIIGMLFVGTPESKFLALQADVRNQTFAVGLIGLFIALMVSYLINRGIISPL------ 344 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + ++ + F + K + L E K+ Sbjct: 345 EQLKQGAERVSNGRYDQKVIVDSDDEFGELAKAFNKM---ATQINISDEKLKKHAEELKA 401 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +E + E + KS +A +SHELRTPL +I G+ E++ TMG + N++ K+ + Sbjct: 402 SYNELK----ELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQKKCLQV 456 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + L LI +LDLS+IE G E+ ++L IV + I L+ A EKNI++ ++ Sbjct: 457 ADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKLNRE 516 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 ++ ++ AD+ + QV+ NL+ NA+KF+ + ++ G ++ + D+G GI Sbjct: 517 VEE--ITIEADKDRITQVLTNLIENAIKFSPANESIMIS-GVLEDEHVHLKVTDHGAGIP 573 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ V F Q + K + G GLGL + +SI+ H G + S+L +G +LP Sbjct: 574 KKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHILLP 633 Query: 474 NT 475 + Sbjct: 634 IS 635 >gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++ V I E + ++L + ++ AE + +KS FLA+MSHE+RT Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRT 294 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G ++ P +Y+ I S LL LIN+ LDL+R+E G+ + Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAID 352 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + L DI+ + ++ RA EK +++ + P++ + D + QV++NL SNA+K Sbjct: 353 QVPFDLSDILNKLEKLMGERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412 Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 F+ G V ++ ++++D G GIA ++ T+ F Q + G Sbjct: 413 FSEK-GEVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGG 471 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNH 486 GLGL IA ++ GG+ ++S+ +G P R IPE Sbjct: 472 TGLGLSIANRLVELMGGKLEVKSEPGQGSSFFFNCPLRRSAQRKAIIPEQED 523 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 6/264 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + ++ AE N AKS FLA+MSHELRTPLNAI+G+SE+++ E + Sbjct: 179 ITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQD 238 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + IH +G+HLL LIN++LD+S+IEAG+ +L A + +V + + + Q Sbjct: 239 DLIPD-LAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQ 297 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + ++ AD +RQ + NLLSNA KFT+ G + ++ G + Sbjct: 298 KNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSD-GTITLSTRRQ-GEWIEFA 355 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+A E+ + +F Q + G GLGL I+++ GG + S+ Sbjct: 356 VADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGR 415 Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488 G LP ++ P+ + Sbjct: 416 GTTFTVRLPA---VSASPKAARPA 436 >gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 606 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + + + E + ++ I+ Sbjct: 367 AVRRLE---RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMARSFLQIIYDE 421 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI +IL+LS+IE+ R L S + + IV I M++ A++K+I + ++ Sbjct: 422 SDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENE 481 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGP 410 L + ADE +RQ+++NLLSN + +T GGRV + V + I I D G Sbjct: 482 L-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGI 540 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P + F + A + G GLGL I + + H G + S+ +G Sbjct: 541 GIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNI 600 Query: 471 ILPN 474 LP Sbjct: 601 ELPV 604 >gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 931 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ N Sbjct: 686 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 741 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + LL LI++ILDLS+IEAG +E + + + + + + +Q++ + Sbjct: 742 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 801 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403 E N+E+ + + +D + QVI N ++NA+KFT+ G + VG+ G Sbjct: 802 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 857 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 858 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 913 Query: 464 EGVEVIAILPNTRVLNF 480 +G LP V++ Sbjct: 914 KGSRFWFSLPCFVVMSE 930 >gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 931 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ N Sbjct: 686 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 741 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + LL LI++ILDLS+IEAG +E + + + + + + +Q++ + Sbjct: 742 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 801 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403 E N+E+ + + +D + QVI N ++NA+KFT+ G + VG+ G Sbjct: 802 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 857 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 858 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 913 Query: 464 EGVEVIAILPNTRVLNF 480 +G LP V++ Sbjct: 914 KGSRFWFSLPCFVVMSE 930 >gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36] gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36] Length = 768 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 12/342 (3%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYITYHLFKSN 211 +L AV + + I+ + ++S A + L +T LF Sbjct: 149 FVVLLLSQAVKTFMVALFIIFVVYKIIIRPLTEMSDAVSKFDSEQLPQPLELTTRLFDDE 208 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + L+ + + + +++AE+ NL KS FLA+MSHE+RTP+N ++G + Sbjct: 209 ITTLTTSY--NASVKHTRHHYRELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTA 266 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ MG KE++ ++ S LL+LIN+ILD S+IE+G+ L+++ ++L ++ Sbjct: 267 SLLQEMPMGR----EQKEFVDMLYSSSITLLDLINDILDFSKIESGQLILAKNPLNLFEL 322 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG--- 387 +E + A++K I + ID ++ V D +RQV+ NLLSNA+KFT+IG Sbjct: 323 CKEIESNFSIIARQKQIALVCHIDDNIPDMVLGDITQLRQVLNNLLSNAIKFTSIGCVRL 382 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + + G I D+G GIA + F Q + G GLGL I +S Sbjct: 383 NIKLMDRKDNNAGIMFQIIDSGIGIAAENQQKIFEKFQQADGSTTRNYGGTGLGLAICRS 442 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 I+ L+ SK +G + + + + E + Sbjct: 443 IVKLMDSDILVYSKPGKGSRFEFAVQFESIDELLQRPDSEQS 484 >gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 921 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 13/257 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ N Sbjct: 676 ITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDT----ENI 731 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + LL LI++ILDLS+IEAG +E + + + + + + +Q++ + Sbjct: 732 EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVK 791 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403 E N+E+ + + +D + QVI N ++NA+KFT+ G + VG+ G Sbjct: 792 E-NVELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGS---IRVGYKQKGEELEF 847 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 848 YVQDTGVGIDAESQAHIFERFVKL----NSFVHGTGLGLSICQSIVEQMGGKIGVESEPG 903 Query: 464 EGVEVIAILPNTRVLNF 480 +G LP V++ Sbjct: 904 KGSRFWFSLPCFVVMSE 920 >gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1969 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 10/261 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D + A ++ AEE N AKS FLA+MSHE+RTP+NAI+G + +++ + Sbjct: 1204 DDVTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKRD----- 1258 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + QHLL +IN+ILD S+IEAG+ L L +++ +L + Sbjct: 1259 ATPQQVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEK 1318 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 A +K +E I + D + Q++LN +NAVKFT G + + Sbjct: 1319 AVDKGLEFITNIADLPQYLHGDGLRLGQILLNFAANAVKFT-TNGSISLHAEQLGEESDT 1377 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G G+ E + + +F QG + G GLGL I++ + GG+ + Sbjct: 1378 IWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDLMGGEIGV 1437 Query: 459 RSKLREGVEVIAILPNTRVLN 479 +S+ G + LP RV+N Sbjct: 1438 KSEPGSGSKFWVDLPFGRVVN 1458 Score = 68.4 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLG 441 GR+ + G + + I D G G+ + I + + G GLG Sbjct: 1 MEAQGRITICTG-SDAHTICVEISDTGCGMPQSVIDKIFDPLF-----TTNPVGLGTGLG 54 Query: 442 LPIAQSIMANHGGQFLIRSKLREG 465 L I M H G + S + +G Sbjct: 55 LSIYADNMRRHSGTIAVNSVIGDG 78 Score = 36.8 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 19/143 (13%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + ++ ++ I L + I+E + ++ E ++ Sbjct: 1004 TGAAVNKTVELSAICKDGREIPIALSLSAVQLNASWHAVAIVRDISEAKQHEAELLEAKQ 1063 Query: 241 RAEEENLAKSR-------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 RAE+ AK++ +A+ + EL+ S + ++ + Sbjct: 1064 RAEQSEQAKTQVLEQLEDMVANRTRELK--------QSNLKLQAIFDAASSGIAQIKDRT 1115 Query: 294 IHRSGQHLLNLI----NEILDLS 312 I R + + + E+L+LS Sbjct: 1116 IIRCNRRMEEIFGYGPGEMLNLS 1138 >gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli LT-68] Length = 918 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1248 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 10/264 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + D +E+ + RA+E AK FLA+MSHE+RTP+N ++G + Sbjct: 559 EQRRSVDSLADYANRMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAG 618 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ ++ + + + I SG+ LL L+N+ILD S+IEAG+ EL L+ I+ Sbjct: 619 LLLDTSL----TDEQQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQIL 674 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + + + K +E+ DPS+ + D +RQ++ NL+ NA+KFT G+V V Sbjct: 675 DDVMDSMAVGSHSKGLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQ-GQVSV 733 Query: 392 TVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + S+ D G GI + + F Q + G GLGL I++ Sbjct: 734 RVSIVNEKESDCILKFSVSDTGIGIQSDKQVLIFEQFNQVDASTTRKFGGTGLGLAISKR 793 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S L EG Sbjct: 794 LVEMMGGTIGVESNLGEGASFWFT 817 >gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 918 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 784 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 9/279 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I + +L+ + E + + + + A N +KS FLA+MSHE+RT Sbjct: 331 IARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRT 390 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+ AILG+++V+ +G L + + + I R+G+HLL+LIN+ILDLSRIEAG+ + Sbjct: 391 PMAAILGYADVL----LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVD 446 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 ++ L +V + ++Q+RA EKN++ + + + + D +RQV++NL+ NA+K Sbjct: 447 AESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIK 506 Query: 382 FTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V + V + G SI D G GI++ + + F QG ++ G Sbjct: 507 FTDE-GSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGS 565 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 GLGL I+Q ++ G+ + S+L EG LP V Sbjct: 566 GLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLPVHSV 604 >gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 652 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 17/355 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATA 196 I S + I + + ++ Y V + V+ + + +IS Sbjct: 296 AIVVSIAMFIVAVTLFVLHAIVRYLVLQPLLHLRDVSDAITHGDTNQRANISTDDEFREL 355 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 F + HL ++ ++ S E D + + E N K+ FLA+M Sbjct: 356 ADAFNRMLRHLTETQTQLQSVNRELDARVDQFAQLNLQLYEA-------NRLKTDFLANM 408 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+I+GFSEV++ +E + Y +I +SG+ LL +IN+ILDL+++EA Sbjct: 409 SHELRTPLNSIIGFSEVLQ---GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEA 465 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ E+ S L +V M+Q +++KNI + ++ L + D + Q++ NLL Sbjct: 466 GKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLL 525 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIAI 431 SNA+KFT GG + V V +S+ D G G+A+ + P + F Q + Sbjct: 526 SNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGL 585 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I + + GG+ +S+L G ILP R+ + E+N Sbjct: 586 TREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILP-YRLSDHEMEENE 639 >gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 918 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 918 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 568 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 4/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL I + E + ++ E K ++ I + L Sbjct: 342 LDAMRKEFVANVSHELRTPLATIKSYVETLL---YSDVDAEYLKRFLKIIDSETDRMTRL 398 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS++++ L +L +++ + I L + A +KN ++ + + V+ D Sbjct: 399 VKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYID 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + M QVI+NL++NA+K+T G + V + ++DNG GI + ++P + F Sbjct: 459 KDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENFATFIVEDNGIGIPKEDLPRIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + A G GLGL I + I+ H G+ I S++ +G V LP Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223] gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223] Length = 927 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L + V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGIFASRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] Length = 738 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 13/263 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ RK+AE N AKS FLA+MSHE+RTP+N I+G ++++ + N+ + Sbjct: 199 QHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLLSETQL----NDEQRL 254 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I SG+ LL +IN++LD S+IEA + L L + E +++LQ A++K + Sbjct: 255 YVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEVVMLLQPSARDKGLT 314 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYI 403 + D L +++ D +RQ++ NL+ NAVKFT G V + V +I Sbjct: 315 LLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLH-GHVLIRVTGVPDESRNDCDIHI 373 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +I+D G GI +I + F Q G GLGL I + +++ GG + S Sbjct: 374 AIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLISLMGGTLWVDSDPG 433 Query: 464 EGVE--VIAILPNTRVLNFIPED 484 +G LP P Sbjct: 434 KGSCFGFRLTLPTVVGSQPAPPA 456 >gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] Length = 927 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1175 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 12/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L+ + E RK+AE N +KS FLA+MSHE+RTPLN I+GF++++ ++ P Sbjct: 636 ISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLAPF-- 693 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ +H S L++LIN+ILD S+IEAG+ EL+E LI++ + + +++ +A Sbjct: 694 --QQKYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQAH 751 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTS 397 +K +E+ +I P + V AD +RQ+++NLL NAVKFT G V +TV + Sbjct: 752 QKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQ-GEVALTVTASNTIAQEN 810 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I+D G GI I + +F Q ++ G GLGL I+ ++ G + Sbjct: 811 EAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSKLK 870 Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481 + S G L I Sbjct: 871 VNSVQGTGSTFYFDLKLKTEEEPI 894 >gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 558 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 159/382 (41%), Gaps = 15/382 (3%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFL 165 + L + L + + + + K+A LI L A+ Sbjct: 33 QRRLSDLERFRVLLDAVSDAILLVDIASNRIIDLNKAACRLIGRCKPEAVRISLRDALPG 92 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + + + + + + +L + I Sbjct: 93 ETADAWGEHLSAGGEAGLPTEERFQMSMRASDGHIVPLEINLSLHYFESKRYAVAVVRDI 152 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + A+ + ++ AE + KS FLA++SHE+RTP+N I+G E+ + ++ Sbjct: 153 TDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL----ALLTASDV 208 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +EY+G I +SG LLN+IN+ILD S+IEAGR +L +V + L A+E Sbjct: 209 QTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAKE 268 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 K++ + IDP + + D+ +RQV+ N++ NA+KFT G V V V T G Sbjct: 269 KDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTER-GSVVVRVDRTEPEGLAGG 327 Query: 402 -----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S++D G GI + + SF Q + G GLGL I++ ++ GG+ Sbjct: 328 ESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRI 387 Query: 457 LIRSKLREGVEVIAILPNTRVL 478 + S +G + +R Sbjct: 388 WVESDPGKGSTFHFTVRLSRAA 409 >gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1320 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 152/325 (46%), Gaps = 15/325 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 +++ + + + F ++ + + ++ +E+ + Sbjct: 735 TTSFAFSIAPPIYRTWYAYLTYFLSFILIVSLFSKWLLSRARRHSAQLEKVVSERTRELD 794 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + K A++ AKS+FLA+MSHE+RTP+N ++G ++ + T Sbjct: 795 ET---NDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSN----T 847 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y+ I S + LL +IN+ILD S+IEAG+ ++ L+D+V + + + ++K Sbjct: 848 QRDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQK 907 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYIS 404 +++ I S+S+ D +RQ+++NL+ NA+KFT G +++++ I Sbjct: 908 KLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFT-TSGDIYISIESGDDPDEITIE 966 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GI + ++ + F Q +I G GLGL I++ + G+ S++ Sbjct: 967 VRDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAESEIGV 1026 Query: 465 GVEVIAIL--PNTRV---LNFIPED 484 G + P + IPE+ Sbjct: 1027 GSSFFFTIKTPVDKSSTNTEAIPEN 1051 >gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1016 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 148/271 (54%), Gaps = 11/271 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + ++ L+ ++ ++ +RAE N AKS FLA+MSHE+RTP+NAILGF ++++ Sbjct: 501 ALELRNILMLTALQSSQLALEQVAQRAEIANQAKSEFLANMSHEIRTPMNAILGFCDLLQ 560 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 G + + Y+ I SG+ LL+LIN+ILDLS+IEAG+++L ++L ++ E Sbjct: 561 ----GLVTEPRQRSYLELIAASGESLLDLINDILDLSKIEAGKFQLYYEPLNLRQLIAEV 616 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTV 393 + RA+EK + + ID ++ ++ D +RQ++ N+L NA+KFT G ++ + Sbjct: 617 QKIFTHRAKEKGLSLISHIDDAVPQGIYFDGIRLRQILFNVLGNAIKFTERGFIQISIRA 676 Query: 394 G-WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 +T I+I D G GIA+ + + +F Q G GLGL I + + Sbjct: 677 QVYTQENIKKVWLEIAITDTGIGIAKNQQDDIFEAFVQSEGQSTRKYGGTGLGLAITRRL 736 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG +++S+L G I I P V + Sbjct: 737 TTLLGGTLVLQSELSHGSSFIFIFPEIEVSD 767 >gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4] Length = 916 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 164 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 217 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 218 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 277 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 278 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 333 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 334 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 393 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 394 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 452 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 453 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 503 >gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2] Length = 1043 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 180/453 (39%), Gaps = 31/453 (6%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLSLGKKVMN-S 96 R ++ + A I F P W + + + + S Sbjct: 206 VRERSLIAYVGYICAVILWQFIWGGHIHLLFSGGIPYWLVGHTELIFVIIGISSGFFTVS 265 Query: 97 DIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY-KSATLLIALSISALS 155 ++ + ++V +A+ + ++ + + +Y + + + + Sbjct: 266 FLETKKNAKAAHPVIVLLLAVQMVIGVVCFLGVLPSIWKNNLVYGVGLIAICSYIFAGIE 325 Query: 156 NF-----MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203 F Y +F A+ + + + L + L F + Sbjct: 326 AFINRFQPARYFIFAWGMLASGAIIGMLSLIGVLPSNDFTTYCFQVGVFLESGLFSFALM 385 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ + + + +E + D RK A + + KS+FLA+MSHE+RTP Sbjct: 386 EKSRSQLEHEVEQATDDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 445 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ILGFS E +E + I+ + +LL ++N++LD S+IEAG+ +++ Sbjct: 446 LNGILGFS----RELTHASLPSDQQEQVRIINTAADNLLTIVNDVLDFSKIEAGKLQINN 501 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S ++ E + ++ + K +E + P + D ++Q++ NLL NA+KFT Sbjct: 502 QPFSPNTLLEEMVTIMAKSSHSKKLEFVFDLAPLPEKLIGDVFRIKQILNNLLGNALKFT 561 Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G + + V I+++D G GI + + +F Q +I QG G Sbjct: 562 PS-GTITLAVKGRPLLHGIHEIEITVEDTGIGINRQDRKKLFNAFSQVDDSINRNYQGTG 620 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I++ ++ G ++S R+G + L Sbjct: 621 LGLVISRELVRLMRGDLTLKSTPRQGSTFVVTL 653 >gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 918 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|291615037|ref|YP_003525194.1| integral membrane sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291585149|gb|ADE12807.1| integral membrane sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 606 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 167/450 (37%), Gaps = 20/450 (4%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKK 92 I + + + P++ + L +A + I W V+ + Sbjct: 19 IRSEQIRARLDSYPLMVVSQLALAPLLVMLMWGKISHEVLQAWLAAVYCVHGIEYFFWHR 78 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + W I L W ++ Y + + ++ + Sbjct: 79 HRALTKSVVQNRYWDRMFRRLTAMIALAWGSAGVLMFVPGDLAYQALMICVVMGLSAGAA 138 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + F P ++F+ ++ L + L ML +F L ++ Sbjct: 139 TSNPF-HPPSMFIYLIGTILPLLGRLAWENDTTHWILFVMLGMFCAFVLKSALELIRTFE 197 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + E + L+ L K ++ +R AE+ N AKSRFLA+ SH+LR PL A+ FS+ Sbjct: 198 QSQRRRFENEILVGALLERKRDAEASRLAAEQANHAKSRFLATASHDLRQPLQALRLFSD 257 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ G I +S L+++ +++LD+SR++AG E L D+ Sbjct: 258 ALQDTAREKETV----RLAGQIGKSVNALVDMFDDLLDVSRLDAGIVEPRMQHFLLGDLF 313 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPS---------LSSVWADEKGMRQVILNLLSNAVKFT 383 AQ K + + V +D + +++ NL+SNA++++ Sbjct: 314 DRLYGDFAPLAQAKGLSFELPVCTGRTCGPQNICDVVVRSDPFLLERMLRNLISNAIRYS 373 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V + I D G GI +P + + Q + +G+GLGL Sbjct: 374 DSGG-VTVRC-ICMLGKVGLDIADTGIGIRAETLPHIFEEYYQADNPHRDRRKGLGLGLA 431 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I + I + + S+ G +P Sbjct: 432 IVRRIEQLLECKVRVSSEPGVGSVFSFEVP 461 >gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703] gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703] Length = 918 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 159/350 (45%), Gaps = 27/350 (7%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 S LL + I+ L + L V P+ + T + LD + G + L Sbjct: 173 FMASCLLLGCMGIALLLAYRLMRDV---TIPIRNMVETVDRIRRGQLDSRVEGRMLGELD 229 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247 + + + + + E I ++E+ D +KRA+E Sbjct: 230 M---LKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 286 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ +T+ T ++Y+ I RS +LLN+IN+ Sbjct: 287 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLTPTQQDYLQTIERSANNLLNIIND 342 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LD S++EAG+ L SL + + E +++L A EK +E+ I + D Sbjct: 343 VLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQFIGDPL 402 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + + + I IKD G GIAE + + Sbjct: 403 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQEQHQVLLEIQIKDTGIGIAEIQQAQLFQ 461 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG SKL +G L Sbjct: 462 AFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWCTL 511 >gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 934 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 165/299 (55%), Gaps = 21/299 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIAEL-------EVAKSLSDETRKRA 242 + L+ + + K Q +D L +E+ + + ++ ++ A Sbjct: 400 ALWFHELAEMANYANQMLRDKRKAQRKLQQHRDHLESEVAKRTYWLKEKTTQLEQAKEIA 459 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N AKS FLA+MSHELRTPLNAILGF++++ ++ ++E + I+RSG++LL Sbjct: 460 EAANQAKSLFLANMSHELRTPLNAILGFAQIMHR---SQTLSQEHQENVNVINRSGEYLL 516 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +LIN++LD+S+IEAG+ L E+ I L ++ E + LRA+ K +++ + D ++ + Sbjct: 517 SLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQLQLDIERDNNVPRYL 576 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG------RVH--VTVGWTSGRGQYISIKDNGPGIA 413 + D K +RQV++NLLSNA+KFT GG + ++ + ++D GPGIA Sbjct: 577 YTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEVILEFQVRDTGPGIA 636 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E E+ + +F Q + I S +G GLGLPI++ + GG ++SK+ EG + Sbjct: 637 ENEMDKLFEAFTQTATGIASQ-EGTGLGLPISRKFVQLMGGDISVQSKVGEGTTFTFSI 694 >gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 543 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 165/401 (41%), Gaps = 19/401 (4%) Query: 90 GKKVMNSDIKIGEVYVWRIWL---LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 + + W V + LL + P + + Sbjct: 16 ARWYCGHAWYEEPAWGWIHIFSDIAVWGAYTAIPIVLLYFLRRRKDIPFPAVFWLFVAFI 75 Query: 147 IALSIS-ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 A + + + + V+ V +A + + + +A + T L+ Sbjct: 76 FACGTTHVIEAIIFWWPVYRLSAVVKLATAIVSWGT------VIALLRVTPLAMSLRGPR 129 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K E L A+LE + A + KS FLA+MSHELRTPL Sbjct: 130 QLQDEVHKRTQ---ELQSLNAQLEKEIVARQLAEQAAHAASQTKSEFLANMSHELRTPLT 186 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A++G +EV+ E ++ ++ + I + G HLLNLIN+ILDLS+IEAGR E ++ A Sbjct: 187 AVMGLTEVLNTE----ETDQEKRQLLAMIRQGGDHLLNLINDILDLSKIEAGRIENNKIA 242 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 +I E + L++ A K+IE+ +D ++ + + A +RQ++ NL NAVKFT Sbjct: 243 CQPGEIAAEVVDSLRVSAAAKSIELSWTMDDNMPTTIAAAPIRLRQILFNLAGNAVKFTD 302 Query: 385 IGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VH+ + + S+ D G GI + + F Q G GLGL Sbjct: 303 HGSVTVHLQIDPLDSQLLRFSVTDTGEGIPPEGLKLLFEPFSQLDGTAARRRDGAGLGLS 362 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I++ + GG + S+ +G LP + P Sbjct: 363 ISKRLAETMGGTIEVESQPGQGSTFALRLPLEIMAAEEPTA 403 >gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 601 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 17/355 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATA 196 I S + I + + ++ Y V + V+ + + +IS Sbjct: 245 AIVVSIAMFIVAVTLFVLHAIVRYLVLQPLLHLRDVSDAITHGDTNQRANISTDDEFREL 304 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 F + HL ++ ++ S E D + + E N K+ FLA+M Sbjct: 305 ADAFNRMLRHLTETQTQLQSVNRELDARVDQFAQLNLQLYEA-------NRLKTDFLANM 357 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+I+GFSEV++ +E + Y +I +SG+ LL +IN+ILDL+++EA Sbjct: 358 SHELRTPLNSIIGFSEVLQ---GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEA 414 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ E+ S L +V M+Q +++KNI + ++ L + D + Q++ NLL Sbjct: 415 GKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKLGQILNNLL 474 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIAI 431 SNA+KFT GG + V V +S+ D G G+A+ + P + F Q + Sbjct: 475 SNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGL 534 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I + + GG+ +S+L G ILP R+ + E+N Sbjct: 535 TREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILP-YRLSDHEMEENE 588 >gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 918 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 992 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 662 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ I + LL LI++ILDLS+IEAG E S I L ++ E LQL+ + Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + ++ + Q+++NL+SNA+KFT G ++ G+ G+ Y Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 779 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + ++ F + S EQG GLGL I Q+++ + GG + S+ Sbjct: 780 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 835 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 836 KGSTFWFTLP 845 >gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1014 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 629 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 684 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ I + LL LI++ILDLS+IEAG E S I L ++ E LQL+ + Sbjct: 685 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 744 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + ++ + Q+++NL+SNA+KFT G ++ G+ G+ Y Sbjct: 745 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 801 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + ++ F + S EQG GLGL I Q+++ + GG + S+ Sbjct: 802 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 857 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 858 KGSTFWFTLP 867 >gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] Length = 992 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 662 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ I + LL LI++ILDLS+IEAG E S I L ++ E LQL+ + Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + ++ + Q+++NL+SNA+KFT G ++ G+ G+ Y Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG---YIRFGYELRGKEIYF 779 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + ++ F + S EQG GLGL I Q+++ + GG + S+ Sbjct: 780 YVSDTGCGIPKDKQKSIFGRFVKL----NSFEQGTGLGLSICQTLVEHMGGTIGVDSEEG 835 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 836 KGSTFWFTLP 845 >gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str. 8401] gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401] Length = 918 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1299 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 16/285 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L ++ + + A++ L + + ++ AE+ N+AKS FLA+M Sbjct: 575 LDLLKHLADQMG-IALTQSQLLAQETRQAQLLALQNEELNVAKQVAEKANMAKSNFLATM 633 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NAI+G S ++ T+ P +Y+ I S LL +IN+ILD S+IE+ Sbjct: 634 SHEIRTPMNAIIGMSGLLLDTTLKP----EQFDYVETIRNSSHTLLTIINDILDFSKIES 689 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G+ EL E L V E + +L +A K IE+ +++P + V D +RQ++ NL Sbjct: 690 GKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTLVVGDITRIRQILWNL 749 Query: 376 LSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +SNAVKFT G + +T+G +++D G GI + + F Q Sbjct: 750 VSNAVKFT-KIGEICITIGAKQKIYKQTDPTRYEFQFAVQDTGIGIERDRLHRLFKPFSQ 808 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ G GLGL I++ + GG+ + S+ +G Sbjct: 809 VDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFT 853 >gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 519 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 6/270 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + + Q ++L ++ + ++ K+ FL+++SHEL+TPL Sbjct: 256 WRIIQRKQSEEALQKYANELSE----VNKELEKVNDDLKSLDVMKNEFLSNISHELKTPL 311 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 +I G+ E++ ++G L NE K+ + + R+ + L LI +L +S +E+ + Sbjct: 312 VSIKGYVELVFDGSLGTL-NEQQKKAVNIVLRNSERLRRLIESLLFISGLESRAIQYHIE 370 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + + +I+ + + L+ ++K + I + +L + D+ + ++ NL+ NA+KFT Sbjct: 371 KVRIAEIIDNVVNDVNLQIEDKGLLIENNVPENLPLINGDKARLSDMLTNLVDNAIKFTP 430 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GR+ + + +I +KD G GI + IP + F Q +IK G G+GL I Sbjct: 431 SEGRIILNA-YEEEDDLHIEVKDTGIGIPKELIPNLFQRFYQVDASIKRRYGGTGVGLYI 489 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++I+ H G I S+ +G V LP Sbjct: 490 CKNIVEAHKGNIWIESEEEKGTTVHIRLPR 519 >gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] Length = 833 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 10/275 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + + ++L E + EL+ + R+ AE N AKSRFLA+MSHE+RT Sbjct: 254 LERYRYHLEEQVLQRTQELHETNEELQKTVDKLAQARQAAETANHAKSRFLANMSHEIRT 313 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+ ++G +E++ + +E IH SG+ LL ++N+ILD S+IEAGR + Sbjct: 314 PMIGVIGVAELLSGTPLSDH----QRELAHMIHSSGESLLKVLNDILDFSKIEAGRLVVE 369 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 +L+D+V E + ++ AQ+K +E+ +I P + D +RQ++ NLL NAVK Sbjct: 370 RVPFNLVDVVEEPLSLIAKNAQDKKVELICRIQPGTPVSLLGDPARLRQIVFNLLGNAVK 429 Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT+ G + V +G ++ ++D G GI + +F Q + G Sbjct: 430 FTSE-GEISVRIGCRDENCASASIFLEVRDTGIGIDREAQQAIFDAFSQADSSTTRHYGG 488 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I + ++ G + S+L +G + Sbjct: 489 TGLGLAIVRQLLDLMRGHIHLESELGQGSVFTCTI 523 >gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] Length = 921 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 156/349 (44%), Gaps = 27/349 (7%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + LL + ++ L + L V P+ + T + LD + G L Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDV---TIPIRNMVETVDRIRRGQLDSRVEG---HMLG 228 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247 + + + + + E I ++E+ D +KRA+E Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ +T+ T K+Y+ I RS +LLN+IN+ Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTSTQKDYLQTIERSANNLLNIIND 344 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LD S++EAG+ L SL + + E I++L A EK +E+ I + D Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + + + I IKD G GIAE + + Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRRQESLQVLLEIQIKDTGIGIAEAQQTQLFQ 463 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG SK +G Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCT 512 >gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341] gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341] Length = 925 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + F L + V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V S R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1138 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSR 251 L ++ E ++ LE+ D+ RK E+ + KS Sbjct: 427 LLEASEEELRVQQEELTQTNNELEEKAKLLELKNEDLDKARKNITDKINEVEQASKYKSE 486 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A+MSHELRTPLN+IL +++++ LN + K Y IH +G LL+LINE+LDL Sbjct: 487 FMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIK-YATVIHSAGSDLLHLINELLDL 545 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 ++IE+G+ +L E I + + R + ++ A+EK+I IDP + DE + Q Sbjct: 546 AKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPSTFLCDEYRLEQ 605 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V+ NLLSNA KFT GG++ + + +I ++D+G GIA + + +F Q + Sbjct: 606 VLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFI-VQDDGIGIAPEKQKLIFEAFKQEDGS 664 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + + GG+ + S+ +G ILP Sbjct: 665 TSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILP 707 >gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 2213 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ ++ AE AKS FLA+MSHE+RTP+NAI+G S + + + Sbjct: 1458 ITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTGL----D 1513 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++YI I + + LL LIN+ILD S++EAG+ E+ +L D + + ++ ++ + Sbjct: 1514 RKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKTR 1573 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 EK +E+ + + D + Q+++NL +NAVKFT G V V++ Q Sbjct: 1574 EKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEK-GEVVVSIEKVCVDDEQV 1632 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G G+ + ++ + SF Q + G GLGL I++ + GG + Sbjct: 1633 TLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISVE 1692 Query: 460 SKLREGVEVIAI 471 S +G + Sbjct: 1693 STFGKGSSFVFT 1704 >gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 1052 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 10/266 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E +L ++LE + + + A++ N AKS FL+ MSH++RTP+N I G +E+ Sbjct: 523 TELRELQSKLEERTVMLNTALEEAKQANEAKSDFLSRMSHDIRTPMNVIAGMTEIAGSHV 582 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P E K+ + I S HLL LIN++LD+SRIE G + ++ +SL ++RE I++ Sbjct: 583 YEP---ERVKDCLQKIRLSSHHLLGLINDVLDMSRIENGNFHINMVPVSLPAVLREVIMI 639 Query: 339 ----LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 ++ +AQ ++ + D ++D +RQ++LNLLSNA KFT + GR+ V Sbjct: 640 TLAGIREKAQIFDVHLVNLEDE---QFYSDALRLRQILLNLLSNACKFTPVSGRIVFEVE 696 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ++ D G G++ + + +F + + +G GLG+ I + ++ G Sbjct: 697 QKDRTALIFTVSDTGAGMSPEFLEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDMMEG 756 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480 + S +G LP V Sbjct: 757 TITVSSCPGKGTTFQVTLPAAVVQEE 782 >gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 944 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 105/439 (23%), Positives = 173/439 (39%), Gaps = 23/439 (5%) Query: 40 LHVESLFRVSPILPLFVLLVA--NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97 +++L L +L + Q P+W+ + V A L + Sbjct: 3 AQLDTLRAHFGKFLLLILWAHVPALVLIALQTGHSPLWTALAGMVLAGCYHLS--WLRHG 60 Query: 98 IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157 +L + L L ++ + L IA Sbjct: 61 AAPVT-----RYLSAVALMGEPAIMLFLLTGHTWQMDMHMYFFAMLALTIAWCDWRAIVT 115 Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 + + S ++ + L + + L + K++ Sbjct: 116 GAVAVSLHHLVLLYLLPSAVFSQDGNIGRVILHAGIVIFQTIV------LVWISHKLVES 169 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + E+ + + + AEE N AKS FLASMSHE+RTP+NAILGF +I Sbjct: 170 FDRIGRMSEEILIKNEALTQRTREAEEANRAKSLFLASMSHEIRTPMNAILGFCHLIART 229 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + P K+++ I+ +G LL LIN+ILD S+ EAG+ L + + I Sbjct: 230 DLSP----KQKDHVSKINDAGVSLLRLINDILDFSKNEAGKLTLEARPFDVRAAITNQIN 285 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTV 393 ++ + A K +++ +I P++ + DE QV+LNLLSNAVKFT G + V Sbjct: 286 LVNIDADNKRVKLETRISPAVPRKIIGDELRFNQVVLNLLSNAVKFTENGTVIVRADVAS 345 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +S++D+G G+ E + + SF Q + G GLGL I + I+ G Sbjct: 346 SQDRDVVLELSVRDSGIGMDEQQQAKLFKSFSQADSSTTRQFGGTGLGLAICRQIVEQMG 405 Query: 454 GQFLIRSKLREGVEVIAIL 472 G + SK+ EG + Sbjct: 406 GNIRVESKIGEGSTFTFRI 424 >gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 903 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L ++ L+ + P+ + + + +D + Sbjct: 289 LFSIIGIFLACITAYFLASRIMIPINTITEVFKKLAKGEDVDAIPGITRHNEIGQLANAA 348 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + N + + A+ L +E E+ + E++ +AE+ ++KS FLA+MSHE+RTP+ Sbjct: 349 DVFHEKNKQTSALLAQAQRLNSEQEMLNAELVESKHKAEQATVSKSMFLANMSHEIRTPM 408 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+G +V+ + P T ++++ + S Q L++LIN+ILD S++EAG+ ++ + Sbjct: 409 NGIIGLLDVVMKSDLTP----TQRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQV 464 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 SL + + + RAQEKN+ + DP++ ++ D + QV+LNL SNAVKFT Sbjct: 465 EFSLNSVFANLLTNISARAQEKNLNVRFICDPNIPPTLIGDPLRISQVLLNLTSNAVKFT 524 Query: 384 AIGGRVHVTVGWT---SGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G + +++ + + +KD G G+++ ++ V SF Q G Sbjct: 525 -RNGSITISITHDVIPNSDKVLLKARVKDTGIGMSKEQLGKVFESFTQADGTTSRDFGGT 583 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I + ++ GG +S+L G Sbjct: 584 GLGLTIVKQLVHLMGGNVTAQSELNVGSTFEVTF 617 >gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 610 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 118/438 (26%), Positives = 190/438 (43%), Gaps = 20/438 (4%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + L VA+ + T + +++ ++ Sbjct: 161 TNPALRTSLLAFGVASATLYAAVLAFAADTLARTSVTLLSMEEERYRLLARNMSDVISRH 220 Query: 106 WRIWLLV-GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 R ++ A+ G E + + L ALS +A + Sbjct: 221 RRNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGS-------- 272 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--- 221 A S + + AG + + L ++ V E Sbjct: 273 -------EASSVEFRLRRDAPGEGRAGQQSVDFIWVEMRCRPLDRAGVTCAGTDQEVVAV 325 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + ++ + + R AE + AK+RFLA+MSHELRTPLNAI+GFSE++ E + Sbjct: 326 MRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLV 385 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 LN +EY I+ SGQHLL+++N ILD+S++E+G +EL+ + + C +L L Sbjct: 386 LNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLAL 445 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 RA+E +++ L + D + +Q+++NL+SNA+KFT GGRV V+ G G Sbjct: 446 RARENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAG-VDGARL 504 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + I D G GIA ++ + F Q + +G GLGL I +S++ HGG+ I SK Sbjct: 505 LLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESK 564 Query: 462 LREGVEVIAILPNTRVLN 479 L EG V LP V Sbjct: 565 LDEGTTVTIALPINCVAE 582 >gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 897 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 142/262 (54%), Gaps = 7/262 (2%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 I + + + + ++ AE + AKS FLA MSHELRTPLNAILGF++++ Sbjct: 388 REYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLM 447 Query: 275 ELETMGPLNNE--TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 E E N +KE++ I RSG+HLL LIN++L++S+IEAGR L+ + +LI ++ Sbjct: 448 ERELYHSPNIPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLL 507 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-H 390 ML+L A K + + ID ++ + ++ADE+ +RQ + NLL NA+KFT GG + Sbjct: 508 NSLREMLELPASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNLLGNAIKFTLQGGVILR 567 Query: 391 VTVGW--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V +G ++D GPGI E+ + F Q S QG GLGL I Q Sbjct: 568 VKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRNSQ-QGTGLGLSITQKF 626 Query: 449 MANHGGQFLIRSKLREGVEVIA 470 + GG+ + S+ +G Sbjct: 627 IGLMGGEIQVSSERGKGTIFRF 648 >gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01] gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01] Length = 809 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 140 YKSATLLIALSISALSN----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + ATL + +S + N +L F + +++L I+ V+ + Sbjct: 125 FPLATLTVQSDLSMILNDFEERVLLLLAFEAVKIFLLSLVCLTIVYRLVVKRLMTMSSQI 184 Query: 196 AL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 F T +K + L + + + ++ + AE N Sbjct: 185 NQQQVEDNKPRFITPTDSTYKDEISTLESSY--NQSVERIRQQYQELEKAKDVAEVANRN 242 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N I+G S ++ M + KEY+ ++ S LL+LIN+I Sbjct: 243 KSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSLTLLDLINDI 298 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEAGR EL + + ++ I + +++A++K + IDP + V D Sbjct: 299 LDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLAIDPKIPTMVIGDGTQ 358 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVL 421 +RQV+ NL+ NA+KFT G V +++ + D+G GIAE + +V Sbjct: 359 LRQVLNNLVGNAIKFT-EHGHVTLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQSVF 417 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q + G GLGL I I+ G + + S + +G Sbjct: 418 DKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSVVGKGSTFYFT 467 >gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 157/411 (38%), Gaps = 20/411 (4%) Query: 69 NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128 + + ++ A + + R LL ++ L ++ Sbjct: 417 GTVLEIRTVPLAGGGAVRTYTDITARHGAEQARRESEARYRLLADNVSD------LIVLG 470 Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLD 186 Y++ A L + + + P + +T +S Sbjct: 471 HADGRRSYISPAVHAMLGYTVEEA------HRIGMREWLHPEDLGRVFATTTSLSPERPT 524 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 S+ L + + + + E + ++ + AE Sbjct: 525 ASVVYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQERRLEQAKVAAEAGA 584 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ FLA+MSHELRTPL +LG +++ + + IG +G+ LL ++N Sbjct: 585 RVKAEFLANMSHELRTPLTGMLGVHDLLA---GDTSLSAAQRHLIGLAQEAGRSLLAIVN 641 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADE 365 +ILD S+IEAG+ + SL +V C ++ A+ K + + +I+ + + D Sbjct: 642 DILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVAEIEGDVPDWYVGDP 701 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSF 424 +RQ++LNL SNAVKFT G + + V +G + + D G GI ++P + F Sbjct: 702 TRLRQILLNLASNAVKFTPQ-GEIALRVRSAAGTGRVRVEVTDTGIGIPADKLPLLFERF 760 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + G GLGL I + ++ GG + S +G LP Sbjct: 761 SQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIPGQGSTFWFELPLA 811 >gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella flexneri VA-6] Length = 918 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580] gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580] gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 581 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 6/235 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ EE + F+A++SHEL+TP+ +I GF+E + M ET +++ I + Sbjct: 348 ERKQLEE---MRKDFVANVSHELKTPITSIKGFTETLLDGAMNER--ETLLQFLSIILKE 402 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI ++LDLS+IE + L+ ++ +I+ E ++L+ +A+EK I + + Sbjct: 403 SSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPDK 462 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + D ++Q+ LNL++NA+ +T G V ++ + ++D G GI + EI Sbjct: 463 PAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLED-AVQVKVRDTGIGIKQSEI 521 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 P + F + G GLGL I + ++ H G+ + S+ +G E L Sbjct: 522 PRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRL 576 >gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI] gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 621 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 15/294 (5%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + ++L + I E + + ++ ++ E + K+ FL+++SHEL Sbjct: 93 ARVAKLMMDLFEELLETNRKLKMEITERKKVEEALRQSNEKLTELDELKTDFLSTVSHEL 152 Query: 261 RTPLNAILGFSEV-------------IELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 RTPL ++LGF+++ I + + K+ + I G+ L LIN+ Sbjct: 153 RTPLTSVLGFAKITQKRLEEHIFPLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELIND 212 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LD++++EAG+ E +S+ D++ ++K + F++I+ L + D Sbjct: 213 VLDIAKLEAGKIEWKMEKLSMADVIERATAASSYLFEQKGLAFFKEIEEGLPDLTGDRDR 272 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QVI+NL+SNAVKFT G V G +S+ D G GIA + + F Q Sbjct: 273 LIQVIINLISNAVKFTNE-GSVTCRARMI-GDEITVSVIDTGIGIAREDHERIFEKFKQA 330 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + +G GLGL I + I+ +HGG+ + S+ +G LP +R + + Sbjct: 331 GETLTDKPKGTGLGLAICKQIVEHHGGRIWVESEPGKGSSFSFALPVSRQADVL 384 >gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 758 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 152/306 (49%), Gaps = 9/306 (2%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + + +L L F ++ YH+ + + + L+ ++ + AK +++A Sbjct: 342 TLRYMLGLVILGVLLIFTIFVAYHMKRRDNQRLAAHSKDLQI------AKDRLAIAKRKA 395 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + AKS FL+ MSHELRTPL AI+G++E++ E ++ K+ + + +G+ LL Sbjct: 396 EDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLDSDDRHVKD-LERVIHNGERLL 454 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 LIN +LD+++IE+G +L + + L +V E + ++ I++ Q++D S Sbjct: 455 RLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDDGESLPK 514 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD + + +++NLL NA KF G V + + + YIS+ D G G++ + + Sbjct: 515 ADPEKLLHILINLLGNASKFAPK-GVVSIKAYHRAEK-IYISVADTGIGMSPEQQQHIFD 572 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q QG GLGL I + + GG + S+L +G I LP V Sbjct: 573 PFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKGSTFIVELPLPIVPPAPK 632 Query: 483 EDNHES 488 + E+ Sbjct: 633 DQEPEA 638 >gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 883 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ ++ E +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 643 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 698 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ + + LL LI++ILDLS+IEAG ++ +E + + + + ++ ++++A+ Sbjct: 699 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 758 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+EI + +D + QVI N ++NA+KFT G + V Sbjct: 759 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 816 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI + F + S G GLGL I +SI+ GG+ + S+ + Sbjct: 817 IADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 872 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 873 GSCFWFTLPIK 883 >gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] Length = 744 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 112/274 (40%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL--EVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + L +K +L A+ E+ + +DE + RAE+ N AKS FLA++SHELR Sbjct: 456 SERGHMATIADLRQSRQKLELQAQQLVELTEKYADE-KTRAEDANQAKSEFLANISHELR 514 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+GFSE+++ G L ++ YKEY DIH SG +LLN+IN+ILD+S+IEAGR EL Sbjct: 515 TPLNAIIGFSEIMDQGMFGDLGSDKYKEYCKDIHSSGNYLLNVINDILDMSKIEAGRIEL 574 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S + + IV++ ++ A EKNI++ + P + + AD + ++Q++LNLL+N+VK Sbjct: 575 SVEDVQIQQIVQDAARIISATAAEKNIKVVNENLPHM-HLQADRRAVKQILLNLLANSVK 633 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT G V V+ G + I DNG GIA+ +I + F Q +G GLG Sbjct: 634 FTPENGEVRVSARKV-GAFAELKITDNGIGIAKKDIDRLAKPFVQVENQFTKTHKGSGLG 692 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L IA+S+ HGG I S++ +G EV LP Sbjct: 693 LAIARSLSELHGGYMEIDSEVGKGTEVTIKLPLK 726 >gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] Length = 669 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 143/291 (49%), Gaps = 8/291 (2%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 V G+ L + +V + E + A+ E ++ A Sbjct: 142 VPMWDSCGVTVGYLGLDASAEKQWTREDVTFVRLVGELIAIAESRYEAEKELKEAKEAAV 201 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N AKS FLA+MSHELRTPLNAILGF+ +I + Y++Y+ ++RSG+HLL Sbjct: 202 KANKAKSEFLANMSHELRTPLNAILGFTRLISR---DSSISSEYRQYLEIVNRSGEHLLE 258 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 LIN+IL++S+IEAGR + S L ++ ML+ +AQ K + + L + Sbjct: 259 LINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLIFDRSSDLPQYIC 318 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 DE +RQV++NLL N +KFT GG RV + + I+D G GIA EI Sbjct: 319 TDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDDQRLLWEIEDTGLGIAPEEIYK 378 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + F Q KS QG GLGLPI++ + GG + S L +G Sbjct: 379 LFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILGQGSIFSF 428 >gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 620 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 4/258 (1%) Query: 218 QAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 AEK + ELE +E ++ + KS +A +SHE+RTPL +I G+ E++ Sbjct: 362 MAEKIAISNKELEKRALELEEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLD 421 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 E +G +NN + ++ + + L LI+ +LDLS++ G E+ I++ + E I Sbjct: 422 EAVGKINN-SQRKCLTTARENVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVI 480 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L+ + EKNI I +ID + AD+ M+QV +NL+ NA+KF+ + + Sbjct: 481 DDLKPISAEKNINITLEIDD--IIINADKDRMKQVFINLIENAIKFSPENEIIEIKGKEE 538 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I++KDNG GI + ++ V F Q ++ K +G GLGL + +SI+ HGG Sbjct: 539 YHGDVSITVKDNGEGIPKDKLEKVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSI 598 Query: 457 LIRSKLREGVEVIAILPN 474 ++S++ +G +LP Sbjct: 599 WVKSEIGKGCTFYIVLPK 616 >gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 853 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +K L + + + AE N AKS FLA+MSHELRTPL ++G S + Sbjct: 445 ELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSEFLATMSHELRTPLTCVIGISSTLL 504 Query: 276 LETMG-----PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + G + + ++Y+ IH SG+HLL LIN+ILDLS++EAG+ L S SL Sbjct: 505 QWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEFSLSK 564 Query: 331 IVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 I E + + +A++ +++ + +P L AD++ ++Q++ NLLSN +KFT GG Sbjct: 565 ISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGS 624 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + V ++D G GI++ + P + F Q + + G GLGL + + + Sbjct: 625 VRLKVMRYK-NTAIFQVEDTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQL 683 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + H G + S + G LP ++ + Sbjct: 684 VELHNGIIEVESTVNVGSTFTVKLPAQQLKS 714 >gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1] Length = 376 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 94 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 152 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 153 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 212 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 213 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 271 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 272 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 330 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 331 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 374 >gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 1319 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 10/351 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + +YLT+ + L++ + S V + + + + Sbjct: 486 MYCLSPHGKYLTVNAKFCEMFGLTMQEIVGRTPNEVFNASTGQVFTTVHQELRQTKGSRN 545 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L+ ++ + + F + +S + E + ++ E ++ A+ + Sbjct: 546 YELSLCDGSSQNREMLVYEASFSNGDGEISGIVGILLDLTERKQFENELREAKELADAMS 605 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK FLA+MSHE+RTP+NAILG + + + + + K+Y+ I+ S ++LL +IN Sbjct: 606 QAKGDFLANMSHEIRTPMNAILGMAHLALNTEL----DPSQKKYLTRINESAKNLLGIIN 661 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S+IEAG+ + SL ++ + ++ +A EK +E IDP + + D Sbjct: 662 DILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKVPIGLVGDP 721 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 + QV++NL SN+VKFT G + V+ S+KD G GIA+ +I + Sbjct: 722 LRLGQVLVNLCSNSVKFTEK-GEIVVSALVEQLDENRATIRFSVKDTGIGIAKEKIQHLF 780 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I++ ++ GG+ ++ S G + Sbjct: 781 RAFSQADSSITRQFGGTGLGLSISKQLVELMGGELVVSSSEGTGSVFSFTI 831 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 37/319 (11%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L ++ I ++ E+ +L E+ ++ K Sbjct: 1512 AQLLQQIANQLAIAIQQANLFEQLQQELTERQQTQQQLTERNQQLAESNQKLAHATRLKD 1571 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLNAILG +E + G +N K+ + I RS HLL LIN+ILD Sbjct: 1572 EFLANMSHELRTPLNAILGMTEGLTDVIFGSINT-QQKKALQTIDRSAHHLLELINDILD 1630 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +++IE+G+ EL+ +A S++ + + + ++ +A KNI + +I P + VW DE+ +RQ Sbjct: 1631 VAKIESGQIELNCAATSVLLLCQSSLSFIKQQALRKNIHLEVQIPPHVPDVWVDERRIRQ 1690 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW----------------------------------- 395 V++NLL+NAVKFT GG V ++V Sbjct: 1691 VLINLLNNAVKFTPEGGSVTLSVQRQLIVQDPPPLQGITKVRVHRTPIEQQLGIQLQTSQ 1750 Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 I++ D G GI + + F Q A+ G GLGL + + I+ HGG Sbjct: 1751 FEVHNYLRIAVTDTGIGIPSHYLHKLFQPFVQIDSALNRQYTGTGLGLALVKRIVELHGG 1810 Query: 455 QFLIRSKLREGVEVIAILP 473 + + S G LP Sbjct: 1811 EVGVTSTEGAGSCFTIDLP 1829 >gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736] gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli H736] gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli H736] Length = 918 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + I ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINAMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L + +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +Q+I NL+ NA+KFT G + V S I + +D G GI E + + +F Sbjct: 410 QQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 764 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 13/286 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTP 263 + + + QA + L AE+EV + E ++RAE + AK+ FLA MSHE+RTP Sbjct: 343 MAQLAERTRETQATNEALKAEMEVRRETERELALAKERAEAADRAKTDFLAGMSHEIRTP 402 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ILG ++++ ++YI SG LL +IN++LDLS+IEAG L Sbjct: 403 MNTILGMADLMLET----DPTPVQRQYIEVFQSSGAMLLGIINDVLDLSKIEAGEVRLET 458 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + + D + ++ RA +K + + D +RQV++NL+ N +KF Sbjct: 459 VPVDMADFLNRTREIVAGRAAQKGLAFRIEQADHAPRRFLGDPVRLRQVLVNLIDNGIKF 518 Query: 383 TAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 T G V + VG + ++ D G GIA + F Q + G GL Sbjct: 519 T-ESGTVRLAVGQAADPPGRLTFAVTDTGIGIAPESQEQIFQRFTQADASTTRKYGGTGL 577 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPED 484 GL I++ ++ GG+ + S +G LP P Sbjct: 578 GLAISRRLVELMGGEIRLESAPGQGSTFSFTVDLPEANGAEADPAP 623 >gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 671 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 145/291 (49%), Gaps = 8/291 (2%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 V G+ L + +V + E + A+ E ++ A Sbjct: 144 VPMWDSCGVTVGYLGLDASAEKQWTREDVTFVRLVGELIAIAQSRYEAEKELKEAKEAAV 203 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N AKS FLA+MSHELRTPLNAILGF+ +I + Y++Y+ ++RSG+HLL Sbjct: 204 KANKAKSEFLANMSHELRTPLNAILGFTRLISR---DSSISSEYRQYLEIVNRSGEHLLE 260 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 LIN+IL++S+IEAGR + S L ++ ML+ +AQ K + + L + Sbjct: 261 LINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLIFDRSSDLPQYIC 320 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPT 419 DE +RQV++NLL N +KFT GG + V +G Q + I+D G GIA EI Sbjct: 321 TDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDYQRLLWEIEDTGLGIAPEEIYK 380 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + F Q KS QG GLGLPI++ + GG + S L +G Sbjct: 381 LFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILGQGSIFSF 430 >gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187] gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 908 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 141/278 (50%), Gaps = 9/278 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + I ++ + + ++E+ D +KRA+E KS FLA+MSHELRTPLN + Sbjct: 250 NEMQQSIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTPLNGV 309 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GF+ + + ++Y+ I S ++LL++IN+ILD S++EAG+ L + Sbjct: 310 IGFTRQLFKTQLSLH----QRDYLSTIEHSAKNLLSIINDILDFSKLEAGKLTLENIPFN 365 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 + +++ + + +L A +K +E+ + + V D ++Q+I N++ NA+KFT G Sbjct: 366 IREMINDTVTLLAPSAHDKKLELSLLVSQPIPDLVAGDPLRLQQIITNIVGNAIKFTEQG 425 Query: 387 -GRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 +HV+ + + I+D G G+ + ++ + F QG +I G GLGL Sbjct: 426 MVNIHVSTTPSIDQQKVLLRFRIRDTGIGMDDEQLMRLFQPFIQGDSSISRRYGGTGLGL 485 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 I+Q ++ G + S+ +G E +P V Sbjct: 486 VISQKLIEQMDGSMQVHSEPNQGSEFTITMPLELVSEE 523 >gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 822 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 12/254 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R AE+ N KSRFLASMSHE+RTPLNAI+G +++ + Sbjct: 299 ITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLTLRSELST--- 355 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + S LL LIN+ILDLS++EA L ES SL + +R+ + ++ +A+ Sbjct: 356 -KQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRDVVRSMEQQAR 414 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 +K + + ++D + V D+ ++Q++ NL+ N++KFT GG V V V R Sbjct: 415 DKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGG-VFVQVSKLEDRKDSD 473 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +S++D G GI + + V SF Q + G GLGL I++ ++ GG+ Sbjct: 474 EAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRELVEMMGGRIG 533 Query: 458 IRSKLREGVEVIAI 471 ++S G Sbjct: 534 VKSSEGFGSVFSFH 547 >gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 882 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ ++ E +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 642 ITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDT----EDM 697 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ + + LL LI++ILDLS+IEAG ++ +E + + + + ++ ++++A+ Sbjct: 698 EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKAR 757 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+EI + +D + QVI N ++NA+KFT G + V Sbjct: 758 -PNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEE-GNIRVGYDQLDEAHLRFY 815 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI + F + S G GLGL I +SI+ GG+ + S+ + Sbjct: 816 IADTGIGIEPEMQNEIFERFVKL----NSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEK 871 Query: 465 GVEVIAILPNT 475 G LP Sbjct: 872 GSCFWFTLPIK 882 >gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1040 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 12/273 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I ++ L AK L+++ A+E + AKS FLA++SHE+RT Sbjct: 474 IVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQ----AQEASKAKSEFLANISHEIRT 529 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ++G + ++ + P Y G I S Q LL+LIN+ILD+S+IEAG+ L Sbjct: 530 PMNGVIGMTGLLLETDLTP----QQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTLE 585 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 L +++ + ++A++KN+E I+P + + D +RQ+++N+ NAVK Sbjct: 586 ILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAVK 645 Query: 382 FTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT+ G ++VT+ I+D G GIA+ +I T+ F Q + G Sbjct: 646 FTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGT 705 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL IA+ ++ G + S + +G Sbjct: 706 GLGLSIAKDLVELMQGSIGVESTVNQGSLFWFT 738 >gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium] Length = 595 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 121/476 (25%), Positives = 214/476 (44%), Gaps = 6/476 (1%) Query: 4 SRKNKEKDVGLLI---SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 S ++ + V + + S + + + ++ + L P+ L +VA Sbjct: 116 SGRHVNRGVPVSVPWESTLAEPMRRALRGESGTVIDLDYRAAKVLAAFEPVRRLNAGVVA 175 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 I + P + +++ + + E + + Sbjct: 176 KIDLAEIRRPFLRAAGVCFVSLLLMIAIGASLFRRISVPLIEGEKA---MGELRKLHQSI 232 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 ++ + + S+ + A ++ Sbjct: 233 EQSPLMIFITDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLL 292 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 S + SF+ I ++ +++ + I + + A+ + R+ Sbjct: 293 SGRQFKAEIKDRRKDGSSFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAARE 352 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE N AK+ LA+MSHELRTPLNAI+GFSE ++L+ GPL + Y+EY DI+ SGQH Sbjct: 353 QAEIANRAKTELLANMSHELRTPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQH 412 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL LIN+ILD+S IEAG+ L E +++++I + +++ RA++ ++ +F + L Sbjct: 413 LLKLINDILDVSAIEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLEASDGLPP 472 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + AD + ++Q++LNLLSNAVKFT GGRV + G ++++ D G G+ E E+ Sbjct: 473 LLADGRRIKQILLNLLSNAVKFTPEGGRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLA 532 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +T FGQ + +G GLGLP+ + ++ HGG F + SK G AI P +R Sbjct: 533 MTEFGQVDGGLDRRHEGTGLGLPLTKGLVEIHGGIFSVESKKGHGTTASAIFPASR 588 >gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] Length = 914 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 169/363 (46%), Gaps = 28/363 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L++ L +S + L V P+ +S + LD+ + G L L Sbjct: 171 IISAGVVLVLGLILSCFFAYRLLQDVE---MPIKQMISMIDRIRRGHLDVRIEGKLLGEL 227 Query: 198 --------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + ++ + + I ++ + + +LE+ D +K A+E K Sbjct: 228 DTLKNGINAMAISLSEYHLEMQQSIDQATSDLRETLEQLEIQNVELDIAKKNAQEAARVK 287 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + + ++Y+ I +S +LL +IN+IL Sbjct: 288 SEFLANMSHELRTPLNGVIGFTRQMLKTQLSS----SQQDYLQTIEKSANNLLTIINDIL 343 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L D + E + +L A EK +E+ +IDP + + V D + Sbjct: 344 DFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGVIGDPLRI 403 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSF 424 +QV+ NL+ NA KFT G ++V+V R + + I+D G GI+E + + +F Sbjct: 404 QQVLTNLIGNATKFTER-GHINVSVELKQQRDERLELQFVIRDTGIGISERQQSQLFQAF 462 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-------LPNTRV 477 Q +I G GLGL I Q ++ GG S+L +G LP + Sbjct: 463 RQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFTMTLIKTDLPLVQP 522 Query: 478 LNF 480 ++ Sbjct: 523 IDA 525 >gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] Length = 2241 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 13/264 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L + ++ R A + N +KS FLA+MSHE+RTP+N ++G S+++ + Sbjct: 1470 LENRITERTRELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTNLDN-- 1527 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 K Y S LL +IN+ILD S+IE G+ L E+ +L +V+ + +LRA Sbjct: 1528 --KQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRA 1585 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSG 398 K++E+ I P++ ++ D + Q++LNL SNAVKFT G V + V Sbjct: 1586 HTKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVKFT-KSGHVIIRVQSLNEVEID 1644 Query: 399 RGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I ++D G GI+E + + SF Q + +I G GLGL I + ++ GQ Sbjct: 1645 DMHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQ 1704 Query: 456 FLIRSKLREGVEVIAILPNTRVLN 479 +RS+ G + R Sbjct: 1705 IQVRSQPNIGSTFSLKINLERAEE 1728 >gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 622 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 18/337 (5%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML--------ATALSFFTYI 203 + L + L A+ ++ H+ D+S A F + Sbjct: 219 AILISAALVTAILAMVGSYIIVRYVIVKPVQHLRDVSDAIGAGNLSIRANIHTGDEFEEL 278 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 ++ + +++ Q E D+ A+L+ + E N KS FLA+MSHELRTP Sbjct: 279 SHAFNRMLHNLMAYQQELRDVNADLDRKVDELAQANLALYEMNRLKSDFLATMSHELRTP 338 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+ILGFSEV+ +E ++ + +I SG+ LL +IN+ILDL++IE+G+ E+ Sbjct: 339 LNSILGFSEVLA---GSDQLSEKHRRFANNIMTSGRMLLTMINDILDLAKIESGKMEVRI 395 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S D+ +++ + KNI++ ID L + D +++++ NLLSNAVKFT Sbjct: 396 ENCSARDLCESLAAVMRDAFEAKNIDLKCVIDDQLPLIRQDPGKVKRIVSNLLSNAVKFT 455 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG------SIAIKSAEQG 437 GGRV + V + GR I ++D G GIA + + F Q + QG Sbjct: 456 PEGGRVELRV-FAEGRFLVIQVEDTGIGIAPEDQEAIFEKFRQLAQPQRDDAVLTREHQG 514 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL I + + G + S+ G LP Sbjct: 515 TGLGLSIVRELCRLLEGDIKLVSQPGLGSIFTVRLPL 551 >gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] Length = 928 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + E +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 688 ITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVET----EDP 743 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY + + + LL LI++ILDLS+IEAG ++ + + + + +QLR + Sbjct: 744 EEKLEYAKMVEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVK 803 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + + +D + QV+ N ++NA+KFT G + + + + Sbjct: 804 -PGVELIFESTLPQCVIVSDPNRLHQVVSNFINNAIKFTTT-GSIRIGYDKPDDKHLRVY 861 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIA + F + S QG GLGL I++SI+ GG + S+L + Sbjct: 862 VTDTGIGIAPEACRKIFDRFIKL----NSFVQGTGLGLSISKSIIEQLGGTIGVNSELGK 917 Query: 465 GVEVIAILPNT 475 G ILP Sbjct: 918 GSTFWFILPLE 928 >gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1350 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 11/291 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + S ++E + ++ R AE+ + AK+ FLA MSHE+RTPLN Sbjct: 816 RLLRGADGAPSGYVASLRDVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLN 875 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ILG+++++ E + I +G LL ++N+ILD S+IEAG+ EL Sbjct: 876 GILGYTDLLLE---DATLGEGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRP 932 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L +V I +++ +K I I +DP + + D+ +RQV+LNLL+NAVKFT Sbjct: 933 FLLDALVDNTISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTH 992 Query: 385 IGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V ++V G S+ D G GI E + + F Q +I G GL Sbjct: 993 A-GSVTLSVSCLEPAGATAALRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGL 1051 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489 GL I+++++ GG + S++ +G LP L E + + Sbjct: 1052 GLAISKNLVELMGGTIDVESEVSKGTTFWFTVTLPVGGALTAPSEPSRAAA 1102 >gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str. 301] gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str. 2457T] gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301] gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T] gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella flexneri 2002017] gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella flexneri 2a str. 2457T] gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella flexneri 4343-70] gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-671] gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella flexneri 2747-71] gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Shigella flexneri 2930-71] gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-218] gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-304] Length = 918 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISCVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 908 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 12/297 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + V+ +A + + + N +L +E + I +L+ A +E Sbjct: 189 AIIGSVMLFVIAILTLLVNRGIVVLERVVENRNKMLLLVNSELEQEIQKLKSA----EEA 244 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R AE + K FLA+MSHELRTP+NA++G S + + ++ ++Y+ IH S Sbjct: 245 RSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTEL----SDKQQDYLQKIHSSA 300 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL ++N+ILD+S+IEAG+ EL A L +++ +L ++ EKN+E+ + P + Sbjct: 301 KSLLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDV 360 Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAE 414 SV D + QV++NL NAVKFTA G V + + G ++KD G G+++ Sbjct: 361 PSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVSIDLEKEEGDQVVLRFAVKDTGIGMSQ 420 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 EI + F Q +I G GLGL I++ ++ GG+ + S G + I Sbjct: 421 SEIDKLFRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFT 477 >gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 993 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 14/279 (5%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L+ + E + L+ + AEE N+AKS FLA+MSHE+RTPLN+I+GFS+++ + Sbjct: 360 NRKLLDQSEQLQKLAVD----AEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCASDIN 415 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + KEY I +S + LL++IN+ILD+S+IE+G+ EL + L ++ I M+ Sbjct: 416 AND----KEYALTISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMIS 471 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GW 395 +RA EK+I D ++ + D + ++QV++NLL NAVKFT GG + ++V Sbjct: 472 VRASEKDINFLFYCDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKA 531 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + D G GI+E + + F Q I G GLGL I I+ + Sbjct: 532 DDTVDVRFEVHDTGIGISEAAVAHIFEPFHQADAGINRKYGGTGLGLTICNKILHIMESE 591 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI-PEDNHESTQYKC 493 + S G + + I P DN + C Sbjct: 592 IRVYSSEGVGSTFDFTVSFEKDEKHIKPLDNRKKNTAFC 630 >gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 666 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 10/299 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + L + + Y + + + D + + + + E Sbjct: 217 WTLGFQEHVELRVSHPWRGLCWFVVAYEVVGTQDEPRITGYVHD--VTKQRQHECMLREA 274 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE N AKS FLA+MSHE+RTP+N I+G + ++ + P ++Y+ IH + Sbjct: 275 KESAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDLSP----QQRDYVEKIHSTC 330 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL++IN++LD S+IEA +L ++ + + +L+ R Q KN + IDP + Sbjct: 331 ESLLDIINDLLDFSKIEANHMDLEALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDI 390 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAE 414 + D +RQ++LNL NA+KF+ G RV + + G ++ + D G G++E Sbjct: 391 PQTLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHREGNSVTLACLVSDEGIGMSE 450 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E + T F Q +I G GLGL + + ++ GG+ ++S +G LP Sbjct: 451 EEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGGRIHVQSAPGKGSVFRVELP 509 >gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 655 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 143/286 (50%), Gaps = 10/286 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + + L++A+ + + +AE N AKS FLA+MSHE+RTP+NAI+ Sbjct: 136 QKLYTTIRLALKSYQDLNTLKIAEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAII 195 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFS+++ + ++ YI I + + LL LI++ILDLS+IEAGR E+ ++L Sbjct: 196 GFSDILAS----KITDKKQINYISSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNL 251 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 I + L+ EKNIE +ID +L ++ DE +RQ++LNL+ NA+KFT G Sbjct: 252 QGIFIALQQVFSLKIAEKNIEFIMEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNS-G 310 Query: 388 RVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + YI +++D+G GI + + SF Q G GLGL Sbjct: 311 YVKLCANKIDTEENYIDLTLAVEDSGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLT 370 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 I + ++ GQ + S +G L +V ++T Sbjct: 371 ITKRLVEMMNGQISLTSSPGKGSRFEIALHKVKVAVTEQTVKTDNT 416 >gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 16/321 (4%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-------- 225 + + + + G + + F + + V+ AE+ + Sbjct: 99 MPAGYAAYLGIPIKTPMGKVLGTVCSFYRQPHRCTEEEVQFAEVLAERAAIAIDNYQLYQ 158 Query: 226 ------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 A+ E K FL++MSHELRTPL AI+G +EV+ E Sbjct: 159 RQQLVNAQYRQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVY 218 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L N + + I SG+ LL +N+++DLS+IE+G L +S+ +V C+ M+ Sbjct: 219 GSL-NPKQLKSVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMV 277 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +AQ++NI + I L+ V DE +RQV+ NL+SNA+KFT GG V V + + Sbjct: 278 RPQAQKQNITLSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQ 337 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GIA ++ + F Q + G GLGL + Q ++ HGG + Sbjct: 338 -VQVRVTDTGIGIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVE 396 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S++ G I LP + V Sbjct: 397 SEVGSGSTFIVTLPCSYVSAE 417 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 162/319 (50%), Gaps = 4/319 (1%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 +AL ++ H ++ + A + +F ++ + + A Sbjct: 562 LALMVSHDLAEHHYFTTIDLQIQRANGEMLDVAMRVFGLTLQGQPHYLATLRDVTTEKHA 621 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + K FLASMSHELRTPLNAILG SE + GPL NE + + Sbjct: 622 EEKLRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPL-NERQLDAL 680 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +I SGQHLL LIN+ILDLS++EAGR +L A+S+ ++ + ++ ++ +A +K++ + Sbjct: 681 HNIEASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLS 740 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGP 410 +D ++ + AD + ++Q+++NLLSNAVKFT G V++ V ++D G Sbjct: 741 FHLDDQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGI 800 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA+ ++P + F Q + +G GLGL + + + HGG ++ S+L +G Sbjct: 801 GIAQDDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSI 860 Query: 471 ILPNTRVLNFIPEDNHEST 489 LP + +P + T Sbjct: 861 QLPYRQ--PEMPNTTPDPT 877 >gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1079 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 104/475 (21%), Positives = 181/475 (38%), Gaps = 33/475 (6%) Query: 13 GLLISPTGDHLGLEYPSKM-----DFDREIITLHVESLFRVSPILPLFVLLVA--NIGTW 65 L+S L P + +D IT ++ L + A G Sbjct: 172 AELVSQAWSRLTAGAPGQPLDTTTRYDLRRITGVIDYLHTQASEALAKAQTAAPQAAGHL 231 Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 P + +L + + Q+A + + L+ Sbjct: 232 QIPKP----------VSDSIERALSSNTWRLEPSTLATALTARLDADYQLADKVSFVLVD 281 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L+ + I ++ L I + + L + ++ + QAI + Sbjct: 282 LLHQRIDRLQRRVILSLVIGVLGLLIVSALGWSLIRDITQPLG--ELSTTAQAIEEGELD 339 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRK---R 241 + + + + E + +++A E ++ + E Sbjct: 340 APVTVRHRRDEIGRLADALRRMIIAQRQSRQKLVENNLEMLAANEKLQAKTAEAEHLAVE 399 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A N AK FLA MSHE+RTP+N I+G +E+ + P+ +EY+ + S + L Sbjct: 400 ATAANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPI----QQEYLEMVRSSAETL 455 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L L+N+ILD S+IEAGR EL L D++ + + L +RA +E+ +I P + + Sbjct: 456 LELLNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLELALQIRPDVPDA 515 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416 + D +RQV++NL+ NA+KFT G V V V ++D G GI Sbjct: 516 LTGDPHRLRQVVVNLVGNALKFTER-GEVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEA 574 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + +F Q + G GLGL I ++ GGQ + S++ +G Sbjct: 575 QARIFNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVESQVGQGSTFTFT 629 >gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 939 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 18/277 (6%) Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ ++NV + Q E + I EL+ +++ E +++AE + KS FLA+M Sbjct: 671 WNWIRTNVVVNQYQPENGQIELIGVNYDITELKETEAMLIEAKEKAEAADRLKSAFLANM 730 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLNAI+GFS ++ N E K+YI + + LL LI++ILDLS+IEA Sbjct: 731 SHEIRTPLNAIVGFSSLLGET----ENVEERKQYIAIVEENNDLLLQLISDILDLSKIEA 786 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ ++ A+ + + + + ++++ + +E+ + +D + QV+ N + Sbjct: 787 GTFDFTKRALDVNLLCEDIVRTMRMKVK-PGVELLFDSHLPECQIVSDRNRLNQVLANFV 845 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +NAVKFT+ G + V + D G GI + V F + + Sbjct: 846 NNAVKFTSA-GSIRVGYEPLDENRLRFYVADTGIGIEPEKQVQVFDRFVKLD----TFVP 900 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++SI+ GG + SK+ EG LP Sbjct: 901 GTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLP 937 >gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 764 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 11/249 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R+RAE N AKS FLA+MSHE+RTP+N ++G +E++ ++ +E K Y Sbjct: 199 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTSL----SEEQKLYA 254 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA + L E L + E +++LQ A++K + + Sbjct: 255 NTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTML 314 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISI---- 405 D L D +RQV+ NL NAVKFT G V + V G ++ S+ Sbjct: 315 VDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNE-GHVTLRVTGISNPDEGTCSVHCLI 373 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI ++ V F Q +G GLGL I++ ++ G+ + S EG Sbjct: 374 EDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWVESDEGEG 433 Query: 466 VEVIAILPN 474 +P Sbjct: 434 SCFGFRIPL 442 >gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 915 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 156 IFSACLVLIMGLLLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 209 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 210 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 269 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 270 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 325 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E + + A EK +EI K+DP + + + D Sbjct: 326 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDP 385 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + ++V S R + ++D G GI+E + + Sbjct: 386 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLF 444 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 445 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 495 >gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 959 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 9/281 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + ++ E + E + + K FLA+ SHELRTPLN ++G S Sbjct: 554 IGVFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLS 613 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E + GPL E ++ + I +SG L L+N+ILD S++ EL + L +I Sbjct: 614 ESMLDGVAGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREI 672 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 V +++ + K+IE+ +I +V ADE ++Q++ NL+ NA+KFT G V + Sbjct: 673 VEVVVVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLIGNAIKFTDS-GTVKI 731 Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 T I+I D G GI + + SF QG + G GLGL I + Sbjct: 732 TASVLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQ 791 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 ++ H G+ + S + G LP + IPE ++ Sbjct: 792 LVELHQGKIWLDSVVGSGSTFSFTLPIS---EEIPETTAKA 829 >gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1084 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 136/290 (46%), Gaps = 6/290 (2%) Query: 196 ALSFFTYITYHLFKSNVKIL---SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + F + L + QA + ++ + ++ R E + +S F Sbjct: 772 FVDLFAVLANQLAMAAANAQLYGEVQAYSHAMEEKVARRTAELEQANTRLLELDRLRSDF 831 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 L+++SHELRTPL +I FSE++ + E ++++ I + L +IN++LDLS Sbjct: 832 LSTVSHELRTPLTSIRSFSEILLR--YEVDDPEKRRKFVAIIASEAERLTRMINDLLDLS 889 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 RIEAGR EL + L + + Q EK ++ +I+ L V AD M QV+ Sbjct: 890 RIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIEAGLPQVLADADRMHQVL 949 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLLSN+VKF+ GG + + G G IS+ D GPGI + V F Q K Sbjct: 950 TNLLSNSVKFSPEGGTIRLG-GRRQGEFALISVTDQGPGIPADRLEQVFERFHQVRTPQK 1008 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 S G GLGL I++ I+ GG+ + S+L G +P + P Sbjct: 1009 SHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVPLLQEAGASP 1058 >gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1547 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 125/262 (47%), Gaps = 16/262 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I E + +A+ + AKS FLA+MSHE+RTP+N ++G + ++ + Sbjct: 815 QQDITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDL-- 872 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 NET + Y + SGQ LL L+N+ILD S+IE+G+ EL L D + M+ Sbjct: 873 --NETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAF 930 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +A+EK +E DP + + D +RQ++ NL+ NAVKFT G V V V Sbjct: 931 KAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTER-GEVVVRVSIQESGV 989 Query: 400 ---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + S++D G GI ++ + SF Q +I G GLGL I++ + Sbjct: 990 RSQESQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAE 1049 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 GG + S +G + Sbjct: 1050 MMGGDVGVDSVEGQGTTFWFTI 1071 >gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 497 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 16/266 (6%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + ++ +L + K +++E + N AKS FLA+MSHE+RTP+NA+LGF+++++ Sbjct: 154 QEKEQRQELTYKNIRLKKMTEEAK----AANRAKSEFLANMSHEIRTPMNAVLGFADLLQ 209 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + YI I SG+ LL LIN+ILDLS+IEAG+ +L +++ I+ E Sbjct: 210 STI----TDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEI 265 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + + + +EKNI++ I P + + DE +RQ++ N++ N++KFT G ++ + Sbjct: 266 EHIFEQKTKEKNIKLQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASC 325 Query: 394 GWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 Y I+I D G GI+ + + SF Q G GLGL I + Sbjct: 326 SQLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITER 385 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 ++ GG + S++ +G P Sbjct: 386 LVHLLGGSIHLESQINQGSTFTFDFP 411 >gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 569 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 174/345 (50%), Gaps = 13/345 (3%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 ++ ++ +++ L + +L + + + I S+ L+ Sbjct: 95 DHTILFLLPIIMVGLISGSFR-MILSGFFNIGLVFIFFYIYQAEIRSIT---YYNLLFLS 150 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKS 250 + + L + + L QA L+ E + S + ++ AE+ NL KS Sbjct: 151 IVIFLLWLLVRALENALRQSLHLQANLQHLVDERTAQLATSVQEAKSAQRLAEQANLRKS 210 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +FLA+MSHELRTPLNAI+ +E I + GPLN+ K Y + +G+HLL+LIN+ILD Sbjct: 211 QFLATMSHELRTPLNAIINMTEFI--DWFGPLNS-QQKSYQDQVRGAGEHLLHLINDILD 267 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 LS+IEAGR EL + DI +E + ++ A+ K ++I WAD K ++Q Sbjct: 268 LSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIAYHHADGTGLAWADSKAIKQ 327 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++LNLLSNA+KFT G++ V + +++ IS+ D G GIA + + SF Q A Sbjct: 328 IVLNLLSNAIKFTET-GQIRVALEFSA-TTVNISVHDTGIGIAREQQQFIWESFRQIQSA 385 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +G GLG+ I + ++ HGG + S+L +G + LP Sbjct: 386 DDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVCLPTK 430 >gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] Length = 1235 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 158/366 (43%), Gaps = 10/366 (2%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G W L+T+ + + ++ LS+ + + P+ Sbjct: 344 LAVAPIKGPDWLLVTVYPKALVNEAAQSTARFVLIIGLLSLIVEMLMLYVVTLNKVVNPL 403 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + + + +G + + + +L ++ Sbjct: 404 KMLGKASSEIGKANYQLVASGAIELPSNRKDEVGILANAFKSMATRIFDYNTNLEQKVSE 463 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 S E RK+AE + AKS FLA MSHE+RTP+NAI+G S+++ + N+ +++ Sbjct: 464 RTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL----NKRQRDF 519 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + + S LLN +N++LD S+IEA + L + + D++R + +AQ K +E+ Sbjct: 520 MEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVEL 579 Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISI 405 ID + W D + Q+++NL SNAVKFT G V + V Q S+ Sbjct: 580 LLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQ-GEVIIRVKLLEQHNQQSTLRFSV 638 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI + I + T F Q +I G GLGL I++ + GG+ + S+L G Sbjct: 639 IDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVESQLNVG 698 Query: 466 VEVIAI 471 + Sbjct: 699 SQFHFT 704 >gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 957 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 ++ + I + + + +E+ D RK A E + KS FLA+MSHE+RT Sbjct: 246 LSKAQAEMQQNIDQATEDLRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRT 305 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+GF+E++ + ++++ I +S + LL +IN+ILD S+IEAG+ L Sbjct: 306 PLNGIIGFTELLLKSPL----PRQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILD 361 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 L DIV E ++ML A KN+++ + ++ D ++QVI NL++NA+K Sbjct: 362 RVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIK 421 Query: 382 FTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 FT G V + +SI D+G G++ + ++ +F Q + Sbjct: 422 FTQT-GEVVLRASLEEEEADTNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQY 480 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG+ + S+L +G L Sbjct: 481 GGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517 >gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 631 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 6/254 (2%) Query: 225 IAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I E K ++E + + + K RFL+++SHEL+TPL +I G++E+I E++G Sbjct: 380 IESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYDESLGT 439 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L+ E KE + R+ L L++ +L +SR ++G + +S+++IV + L++ Sbjct: 440 LS-EQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQDLKI 498 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 + +EK + + + I + ++ D + ++ N++ N++KFT GG + T+ Sbjct: 499 QIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKFTIK-EEDEFI 557 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I +KDNG GI IP + F Q + G GLGL I + I+ H G+ + SK Sbjct: 558 HIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIWVESK 617 Query: 462 -LREGVEVIAILPN 474 +G E+ LP Sbjct: 618 GENKGTEMHIQLPK 631 >gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3309 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 154/326 (47%), Gaps = 16/326 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 A P++ A A +S + + + L ++ + + E Sbjct: 2752 AELGIVEPILTADGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEEL 2811 Query: 222 DDLIAEL----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + ++E E E ++ A+ N AKS FLA+MSHELRTPLN ILG+++++ Sbjct: 2812 EARVSERTAALEQTNHALAEAKEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRS 2871 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + K + IH+ G HLL LIN+ILDLS+IEA + EL+ L+ ++ + Sbjct: 2872 D---QISPRDKRGLEVIHQCGSHLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVD 2928 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 M L+A +K IE+ ++D L V DEK RQV++NL+ NA+KFT G V + Sbjct: 2929 MFHLKATQKGIELLFQLDNDLPKGVEIDEKRFRQVLINLMGNALKFTEK-GSVTFQILQL 2987 Query: 397 SGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 +I D G GIA ++ + +F Q +G GLGL I+Q I+ Sbjct: 2988 EANAGQATLRFAIIDTGVGIATEQLSRLFKAFEQVGDPRN-HTEGTGLGLAISQRIVQLM 3046 Query: 453 GGQFLIRSKLREGVEVI--AILPNTR 476 GG + S+L G E +P + Sbjct: 3047 GGDIQVSSQLGAGSEFSFCVTVPLAQ 3072 >gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1568 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 134/315 (42%), Gaps = 37/315 (11%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + + E E ++ R+ AE AKS FLA+MSH Sbjct: 859 LLEAVADQVGIAIAQAHLWEQETRQRQQLTEQ-NVALEKARQTAEAATQAKSEFLATMSH 917 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NA++G + ++ + + + I SG LL +IN+ILD S+IE+G+ Sbjct: 918 EIRTPMNAVIGMTGLLLDTELTS----DQRYFAETIRNSGDALLTIINDILDFSKIESGK 973 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL E L + E + +L +A EKN+E+ ID + D +RQ+++NL+S Sbjct: 974 MELEEQPFELRTCIEEALDLLTTKAAEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLIS 1033 Query: 378 NAVKFTAIGGR-VHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NAVKFT G V VT + ++KD G GI I + SF Q Sbjct: 1034 NAVKFTPTGEVLVSVTAQILADEEDRGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDS 1093 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-------------------KLREGVEVIA 470 + G GLGL I + + GGQ + S + G Sbjct: 1094 STSRQYGGTGLGLAICKRLCEMMGGQMWVESGGSVAGNPPAGWIATDSGEESSGGSTFYF 1153 Query: 471 ILPNTRVLNFIPEDN 485 + + IP+ Sbjct: 1154 TI----LSESIPDSA 1164 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 96/273 (35%), Positives = 139/273 (50%), Gaps = 19/273 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ AE NLAKSRFLA+MSHELRTPLNAILGF++++ + P + Sbjct: 1222 AELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQ---PQFS 1278 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ IHRSG+HLL LIN+IL LS++EAGR L L +++ M L+A Sbjct: 1279 GEPSEYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAA 1338 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------ 397 K +++ K D ++ + DE + QV++NLLSNA+KFT G V +TV Sbjct: 1339 NKRLQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFT-SFGEVCLTVRSQPVPAEMS 1397 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++D G GI E+ + F Q K Q GLGL I++ + GG+ Sbjct: 1398 SNSCYLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVK-QSTGLGLAISREFVELMGGK 1456 Query: 456 FLIRSKLREGVEVIAILPNTRV-----LNFIPE 483 + S+L+ G +P RV +P+ Sbjct: 1457 ITVESQLKHGSVFQFTIPLERVQLASIQPELPQ 1489 >gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 931 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L ++++ L + V P+ + + LD+ + G Sbjct: 175 VFSAFLVLILGLGLASVFASRLMHDV---TQPITHMKNVVDRIRRGHLDVRIEG---NMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + M + +Y+ I +S +LLN+IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQMSN----SQMDYLQTIEKSANNLLNIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E I + A EK++EI KIDP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLKIDPKIPQGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ N++KFT G + V + SG + ++D G GI+E + + Sbjct: 405 LRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 514 >gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 801 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 9/279 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I + +L+ + E + + + + A N +KS FLA+MSHE+RT Sbjct: 348 IARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRT 407 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+ AILG+++V+ +G L + + + I R+G+HLL+LIN+ILDLSRIEAG+ + Sbjct: 408 PMAAILGYADVL----LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVD 463 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 ++ L +V + ++Q+RA EKN++ + + + + D +RQV++NL+ NA+K Sbjct: 464 AESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIK 523 Query: 382 FTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V + V + G SI D G GI++ + + F QG ++ G Sbjct: 524 FTDE-GSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGS 582 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 GLGL I+Q ++ G+ + S+L EG LP V Sbjct: 583 GLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLPVHSV 621 >gi|189426492|ref|YP_001953669.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422751|gb|ACD97149.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 717 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 159/365 (43%), Gaps = 23/365 (6%) Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 G C + + A L + +++ + +F+ P Sbjct: 92 CASRLQGACDAAIMDGAFAWALNRNQAVMVPAQGGGTLLLQSITTRSRIHGMFVGQVPDE 151 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 A + + +S+ A T + L K ++ L + E Sbjct: 152 SAT----FDAPSLNALSILLNAAAYALESTTL-RGLLKEHMANLEQRV---------EER 197 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R++AE + AKS FLA+MSHE+RTP+N ++G +E++ P E ++ + Sbjct: 198 TRELAIAREKAEAASRAKSEFLANMSHEIRTPMNGVMGMTELLLDGGFSP---EQQRKQL 254 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I S ++L+ +IN+ILD S+IEAG+ EL+ + L + + + L L+A++K + + Sbjct: 255 LAIRDSAENLMVIINDILDFSKIEAGKLELAAAPFLLRKNLEQGLYSLGLKAEQKGLRLV 314 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 ++D ++ + D +RQ+++NL+ NA+KF+ G + V+ + RG + Sbjct: 315 IRVDQAVPDRLDGDCYKLRQILINLVGNAIKFSDQ-GEITVSAQLEASRGGFLLVRFCVA 373 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + +F Q + G GLGL I + + GG+ ++S+ +G Sbjct: 374 DQGIGIPLESQSRIFETFEQADVTTTKKFGGTGLGLTICRRLAELMGGRIWVKSEPGKGS 433 Query: 467 EVIAI 471 Sbjct: 434 SFFFT 438 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 11/269 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + + +AEE K+ FLA+MSHE+RTP+N +LG ++ G Sbjct: 125 ITDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLL----TGSPLT 180 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ S + LL +IN+ILD S++EAG+ +L + L ++ E + +L+ A+ Sbjct: 181 PDQRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAAR 240 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K + + +I ++ D +RQV+ NL+ NAVKFT G V V+V Sbjct: 241 DKGLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEK-GDVAVSVEPEESDSSRL 299 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G GI P + + F Q +I G GLGL I + ++ GG+ S Sbjct: 300 RFEVADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSI 359 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 EG LP + +P+ + + + Sbjct: 360 PGEGTTFHFTLPLS---AALPDQDSGAAE 385 >gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + + + E + ++ I+ Sbjct: 343 AVRRLE---RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMARSFLQIIYDE 397 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI +IL+LS+IE+ R L S + + IV I M++ A++K+I + ++ Sbjct: 398 SDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENE 457 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGP 410 L + ADE +RQ+++NLLSN + +T GGRV + V + I I D G Sbjct: 458 L-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGI 516 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P + F + A + G GLGL I + + H G + S+ +G Sbjct: 517 GIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNI 576 Query: 471 ILPN 474 LP Sbjct: 577 ELPV 580 >gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437] Length = 595 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 1/234 (0%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E+ + + F+A++SHELRTPL I + E + E E ++ + + Sbjct: 355 EEEKLDRQRKEFVANVSHELRTPLTTIKSYLEAL-DEGGAMEEPELASRFMRVTRQEAER 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LI+++L LSR++A + ++ + L ++ + + ++K I+ ++ L Sbjct: 414 MTRLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPR 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V+AD + QV+ NLLSNAVK+T G ++ +T S +++ D G GI + ++ + Sbjct: 474 VYADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDLERI 533 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A + G GLGL IA+ I+ HGG + S +G V LP Sbjct: 534 FERFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLPP 587 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 100/337 (29%), Positives = 165/337 (48%), Gaps = 29/337 (8%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P+ + + + ++ + G+ A+ + + + + + L L Sbjct: 77 PISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQ--EEVLARVRLHLKLYFLTKTL 134 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN----- 283 + E +++AE N AKS FLA+MSHELRTPLN ILG++++++ + + Sbjct: 135 AEQNAYLQEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDAALAASKGERN 194 Query: 284 -NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + I +SG HLL LIN+ILDLS+IEAG+ L + +L+ + E + ++++R Sbjct: 195 LTAKQLEGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMR 254 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A EKNI + + + +L + V ADEK +RQV++NLL NAVKFT G V VG + Sbjct: 255 ASEKNIVLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQ-GNVTFNVGVIEDQNP 313 Query: 401 ---------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GI+ ++ T+ F Q + K G GLGL I+ Sbjct: 314 TSLDQGKDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDS-KYRAAGTGLGLAIS 372 Query: 446 QSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF 480 + ++ G Q ++S+L +G LP +V Sbjct: 373 RQLVEFMGSQLNVKSELIKGSMFWFDVALPVVKVTEA 409 >gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 600 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 191/457 (41%), Gaps = 16/457 (3%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85 P + + + L VL N + V A Sbjct: 119 AVPLEAALSASRRVVTAAVALALGCAAMLVVLESMNALPPSHLSSDVASLFTGLCIVLAT 178 Query: 86 NLSLGKKVMNSDIKIGE---VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 + G + + V + I + I + Sbjct: 179 IYAAGLAFGAESLARTSKHLLAVEERRYRLLARNISDVIA------RHRANGDLNFISPA 232 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS-FFT 201 A +L+ + L L V ++ P + + A + + F Sbjct: 233 AEVLLGVPGPTLLLHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRVRRESPHGPEFA 292 Query: 202 YITYHLF-----KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ + + E ++ + + R+ AE+ +KSRFLA+M Sbjct: 293 WVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQEAEQAGASKSRFLATM 352 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAI+GFSE+I E L+ +EY G I+ SG HLL+++N ILD+S++E+ Sbjct: 353 SHELRTPLNAIIGFSEMIAREDEMKLDAARRREYAGLINESGLHLLSVVNGILDMSKMES 412 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G++EL + + + C ++ L+A++ I++ ++ L + D + +Q++LNLL Sbjct: 413 GKFELVSEPFAPREALSSCCNLMVLKARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLL 472 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNA+KFT GG V V+ GR + + D G GI + ++ + F Q + + + Sbjct: 473 SNAIKFTGEGGSVTVSA-QVEGRELLLRVADTGIGIGKDDLARLGNPFFQAGASYQGRRE 531 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I +S+++ HGG+ + S+L G + LP Sbjct: 532 GTGLGLSIVKSLVSLHGGEMKVESELDRGTTISVRLP 568 >gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] Length = 893 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 171/373 (45%), Gaps = 16/373 (4%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ G + + + +++ ++I++ + F++ + Sbjct: 267 RMIFAVQMSGGYYVSTIPKAVLYQSGKAISLITGLIVIISVITLPILIFIVVRNLL--LN 324 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P+ + + + L +SL + H+ E + + Sbjct: 325 PIELLGAASHRVGDGDLGVSLPAHTDDEVGILFNDFNHMVNQIRHYQEQLEEYKHHLEDK 384 Query: 229 --------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 E S + +AE+ N KSRFLA+MSHE+RTPL AI+GF+E + Sbjct: 385 VESRTKALETMNSQLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKI 444 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N K+++ I R+ +HLL LIN ILDLS+IEA + + ++ ++++ ++ + +++ Sbjct: 445 TNN----KQHLSTILRNSKHLLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIE 500 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 AQ+K +++ L + +DE ++Q+++N+ SNAVKFT G V +TV + + Sbjct: 501 PLAQQKKLKLSINYQLPLPHTINSDETRLKQILINIASNAVKFTEQ-GHVSITVHYLPSQ 559 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+D+G G+ E +I + T F Q G GLGL I++++ GG ++ Sbjct: 560 ELMFVIQDSGIGMVESQIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVK 619 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 620 SELDVGSCFTITI 632 >gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1767 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 + V ++T ++ ++ ++ E K LSDE Sbjct: 968 LAEGRVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTE-LKLLSDEL 1026 Query: 238 --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ + LL++IN+ILD S+IEAG+ ++ L ++ + M +A K +E+ + Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410 P++ ++ D + QV++NL++NA+KFT G V +++ + S++D+G Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ + + SF Q + G GLGL I + ++ GG + S+ G Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 471 I 471 Sbjct: 1262 T 1262 >gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 453 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 6/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E +S F+A++SHELRTPL +I GF E + + N E +++ I + Sbjct: 222 RKLE---KIRSDFVANVSHELRTPLTSIRGFIETLREGAID--NVEERDKFLEIIEFEAE 276 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + + I++ D V E +++ A +K+I++ + ++ S Sbjct: 277 RLTRLINDILTLSEIENLKEGFVKEDIAIDDEVNEIFYIMEKTANDKSIKLIKDLNCSGV 336 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + + +RQ+I+NL+ N +K+T GG V VT I +KD+G GI++ IP Sbjct: 337 VIKTSKDRLRQMIINLVDNGIKYTPEGGYVKVTT-IDRKGDVVIEVKDSGIGISKENIPR 395 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F + G GLGL I + I+ + G + S++ +G + +LP + Sbjct: 396 LFERFYRVDKGRSRKLGGTGLGLAIVKHIVESMKGSISVESEVGKGTKFTIVLPKDQ 452 >gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 574 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 27/341 (7%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 + + ++A+ T ++ + + + S F ++ ++ Sbjct: 237 ISSLTLSAAIAAMLAIYTSKAIARPLEATTKIAQQVSEESNFDL--QVPITTSDEVGQLA 294 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++LI + E + AE N +KS FLA+MSHELRTPLNAI+ +SE+++ + Sbjct: 295 IALNELILRVGEYTEELQEAKIAAEAANRSKSAFLANMSHELRTPLNAIINYSEMLQEDA 354 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + I +G+HLL++I++ILD+S+IEAG L + +++ E + Sbjct: 355 QDEGYEDFLPD-LERIQTAGKHLLDMISDILDISKIEAGHVTLYLENFDIANMIEEVVTT 413 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q ++K + +I+ + +++AD+ +RQ++LNLLSNA KFT G + +++ Sbjct: 414 AQPLVEKKGNTLAMQINGDVGTMYADQPKVRQILLNLLSNAAKFTEK-GVITLSIERIKN 472 Query: 399 RG----------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 + D G G+ E ++ + F Q + Sbjct: 473 DKFKSKNKKYKQEYPPALNSNSQVLIFRVSDTGIGMTEEQLQHIFKPFTQADASTTRKYG 532 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I+Q + GG+ + S++ G LP RV Sbjct: 533 GTGLGLTISQRLCQILGGEIAVESEVERGSTFTVRLP-ERV 572 >gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 854 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 155/319 (48%), Gaps = 14/319 (4%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD----------LIAE 227 + ISL + F+ + + + E+D L E Sbjct: 295 YWAQAIITIISLVVAGILFVFFYWLLGRIERRIHAGEKRIIEERDRSEGLRLQSETLRVE 354 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E + ++ R AE+ + KS FLA MSHELRTPLNAI+G SE++ + + +E Y Sbjct: 355 AEEHRESAERARDDAEKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAV-EFGDEDY 413 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 E + + RS +HLLNLINEILD+S+IEAG+ ELSE+ + ++ E ++ A+ K Sbjct: 414 IEPLERVVRSSKHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKP 473 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + + S+ + D ++Q+ NLLSNAVKFT G+V + V S + Q + + D Sbjct: 474 LSFEYE-SASVGVIVGDALRIKQIFFNLLSNAVKFT-ESGKVKLKVVEQSDQLQ-VDVID 530 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ + T+ F Q ++ +G GLGL I++ G ++S++ +G Sbjct: 531 TGLGMSIEQTETLFQDFVQVDSSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSV 590 Query: 468 VIAILPNTRVLNFIPEDNH 486 LP RV H Sbjct: 591 FSVRLPVKRVSQTQSNVEH 609 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 7/287 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEV--AKSLSDETRKRAE--EENLAKSRFLASMSHELRTPL 264 + +AE L +ELE A+ +D +R AE K FLA+MSHELRTPL Sbjct: 597 RDITDRKRREAEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPL 656 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N IL FSE+++ E GP+ NE + + I SG+HLL LIN+ILDLS++EAGR E+ Sbjct: 657 NGILSFSELLQEEISGPI-NEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 S+++I ++ ++ A K +++ +L+ + D K ++Q+++NLLSNAVKFT Sbjct: 716 IYSVVEICEASLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTP 775 Query: 385 IGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG+V + V + + D G GI ++ + F Q ++ +G GLGL Sbjct: 776 DGGQVLLEVTTDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLA 835 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489 + + + GG + S +G I LP + P + + Sbjct: 836 LVRRLADLMGGSIGVESDGEGQGCRFILALPWNPISVIPPVAENPAP 882 >gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6] Length = 830 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 162/399 (40%), Gaps = 11/399 (2%) Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 L A ++ + + I E + + L+ + + T Y Sbjct: 295 FLCSAADMIAAAIRQWETLRTIQEREHFIQRVTQATP------DLIYVYDLQTDQVIYTN 348 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + + + +I ++ A L+ + A + Sbjct: 349 MEQGPGGMPLTAIIGRTSDADLSARELATRQAYLTQIINAADMQVCSLEYRLQQADGSNL 408 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + E ++ AE N AKS FL+ MSH Sbjct: 409 WLLRRDTVFVRDAQGYPTQILGIVQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSH 468 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL AI+G+S+++ + M + E K + I+ SG+HLL LIN++++LSRI++G+ Sbjct: 469 ELRTPLTAIIGYSQLL-GQLMTVGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQ 527 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L ++++D+V E + M++ + + + V D +RQ+ILNLL+N Sbjct: 528 RNLDMRPVNIVDLVTEAVSMVRPLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNN 587 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A KFT G + T + I D G GI + +IP + F Q A+ Sbjct: 588 AAKFT-ENGEITFTTIYDPQGEVPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRY 646 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL + + + GG+ ++S L G LP Sbjct: 647 EGTGLGLALCRRLCEVLGGEISVQSTLGVGSIFTVRLPL 685 >gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 988 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 132/268 (49%), Gaps = 9/268 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + + ++ AE N AKS FLA+MSHE+RTPLN I+G +++E + Sbjct: 577 ISSRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLEST----DTD 632 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI S ++L LI++ILDLSRIE G L ++ + E I Sbjct: 633 HEQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITELS 692 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRG 400 K IE+ I+ ++ V+ D +RQ+I N+ N++KFT+ GR+ + ++ Sbjct: 693 SKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSS-GRIFINIDSLIQRQTIY 751 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I + D G GI E ++ + F Q ++ GVGLGL I + ++ GG + S Sbjct: 752 LFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMGGTITVES 811 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488 + +G +P I ++ +++ Sbjct: 812 NIDKGTTTCIAIPFQTSEPPILDNTNKN 839 >gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 888 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 22/264 (8%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++ A+ N AKS+FLA+MSHELRTP+NA++G + ++ + +++ Sbjct: 357 NTALVQAKRDADTANTAKSQFLANMSHELRTPMNAVIGMTGLLLNTDLDL----QQADFV 412 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG LL+LIN+ILD S+IEAG+ E L + + + ++ RA +K++E+ Sbjct: 413 ETIRSSGDALLSLINDILDFSKIEAGKLEFENQPFDLRICIEQALRIVAPRAVDKSLELA 472 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRG 400 +P + D +RQ+I+NLL+N VKFT G V V + Sbjct: 473 YLFEPDTPEWIIGDVTRLRQIIVNLLTNGVKFTDT-GEVVVYIQDVTADHAAPVRKGHHI 531 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I +KD G GI + + SF Q + G GLGL I + GG+ + S Sbjct: 532 LQIVVKDTGIGIPADRMDRLFKSFSQVDASTTRKYGGTGLGLAICHRLCELMGGRMWVES 591 Query: 461 KLREGVEVIAIL------PNTRVL 478 + +G + P R + Sbjct: 592 DVGKGSSFCFTISVPIADPAQRPI 615 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 153/293 (52%), Gaps = 7/293 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L+ I ++ AE+ +L + + + K FLA+M Sbjct: 847 LATQLAIAIQQASLVEQLQQELAERHQAELKLTQSNQQLAISNQELARATRLKDEFLANM 906 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILG +E ++ G +NN+ +K + I RS HLL+LIN+ILD+++IEA Sbjct: 907 SHELRTPLNAILGMTEGLQEGVFGMINNKQFK-ALETIERSSSHLLDLINDILDVAKIEA 965 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ +L + IS+ ++ ++ ++ +A +K I++ KI +L ++ DE+ +RQV++NLL Sbjct: 966 GQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLPDLFVDERRIRQVLINLL 1025 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +NAVKFT GR+ + V S I++ D G GI + I + F Q A Sbjct: 1026 NNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSA 1085 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + +G GLGL + + I+ HGG+ + S+L G LP P+ Sbjct: 1086 LNRQYEGTGLGLALVKKIVELHGGRVGLTSELGIGSCFTIELPCIPSTPASPD 1138 >gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 927 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + + + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLPGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 844 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 106/278 (38%), Positives = 154/278 (55%), Gaps = 10/278 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELR 261 + + L+ + + + + L++ RK +AE N AKS FLA+MSHELR Sbjct: 556 NQEEARRLNEEQLQHAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELR 615 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI GFSE++ E GPL ++ YK Y DIH SGQHLL LIN+ILD+S+IEAG+ L Sbjct: 616 TPLNAINGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNL 675 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 +SL D+ + + +++ RA+ +++ P L V AD + ++QV+LNLLSNA+K Sbjct: 676 KFEPLSLEDVTEDAVRLVRNRAEAAGLKLEIDFPP-LPEVEADYRAVKQVLLNLLSNAIK 734 Query: 382 FTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT GR+ V +S+ D G GIA ++ + F Q QG Sbjct: 735 FTPRAGRIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGT 794 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL + +S++ H G + S EG V ILP ++ Sbjct: 795 GLGLALTKSLVEMHDGALEMTSTPGEGTTVSFILPISQ 832 >gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus degradans 2-40] gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 1653 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 9/265 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + E I E + A+ + + AE KS FLA MSHE+RTPLN +LG Sbjct: 969 INTVGQMIENTRAIRERDNAQQALVKAKNAAELAARTKSEFLAMMSHEIRTPLNGVLGML 1028 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + + + I S + LLNLIN+ILD S+++AG+ +L ++I + Sbjct: 1029 NLVKRTQL----EDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDFNIITL 1084 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + RA E+ E+ + + D +RQ+++NL+ NA+KFT G V Sbjct: 1085 LEDIAHAMAGRALERGNELIIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFT-QNGEVT 1143 Query: 391 VTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 VT T IS+ D G GIAE +IP + ++F Q + G GLGL I + Sbjct: 1144 VTASLTKNTSGFNLNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKK 1203 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + A GG I S+ G E + Sbjct: 1204 LCALMGGDINITSQEGNGSEFSFQI 1228 >gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 916 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 10/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ ++ AE N AKS FLA+MSHE+RTP+N ++G +++ + Sbjct: 380 ITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALETAL----T 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ S + LL +IN+ILD S+IEAG+ ++ + L ++ + + L LRA Sbjct: 436 EEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRAH 495 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399 EK+IEI + + V D +RQV++NL+ NA+KFT G + + Sbjct: 496 EKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQ-GEIALQADLMQLQNGHA 554 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + +++D G GI+ + + +F Q + G GLGL I + ++ GG + Sbjct: 555 VIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLH 614 Query: 460 SKLREGVEVIAILPNTRVLNFIP 482 S+ +G + N IP Sbjct: 615 SEPGKGSTFHFSVQLQISENAIP 637 >gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1161 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 20/387 (5%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 ++ L ++ T I + +++ + A+F L +Q Sbjct: 360 AVIELGLNQQPNDSISLFLQAITESIGVGVNSAVARVKLRALFEQTQQQAEELESQQEEL 419 Query: 182 MHVLD--ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + L + L ++N ++ + ++ + AK Sbjct: 420 RTTNEELVYKSEQLQASEEELRVQQEELRQTNSELEEKAQQLEERNIAVNQAKEAMSLKA 479 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + E + KS FLA+MSHELRTPLN+IL + +++ L NE +Y G IH +G Sbjct: 480 EELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQIKYAGVIHNAGT 538 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LIN+ILDLS+IE+G+ +LS + + I ++ + A+ K I +D L Sbjct: 539 DLLTLINDILDLSKIESGKLDLSILPLKPLVIKQDMEALFNELAKSKKISFHTVLDKELP 598 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------------TSGRGQYIS 404 ++ D+ + Q++ NLLSNA KFT G + +T+ T+ IS Sbjct: 599 ATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSRQLKTTTEDIIAIS 658 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD+G GI + + +F Q + G GLGL I++ + GG+ + SK E Sbjct: 659 VKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHILGGEIQVNSKQGE 718 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQY 491 G LP PE+ ++ Sbjct: 719 GSTFTLYLPKN--NATAPENQENISEI 743 >gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1391 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 19/294 (6%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKD---DLIAELEVAKSLSDETRKRAEEENL 247 + + L + EK+ +L + K ++ E + N Sbjct: 855 VWTLDEIELLEAVARQLGIAIAHAQLLSQEKEQRQELTYKNIKLKKMTQEAK----AANR 910 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS FLA+MSHE+RTP+NA+LGF+++++ + YI I SG+ LL LIN+ Sbjct: 911 AKSEFLANMSHEIRTPMNAVLGFTDLLQSTI----TDPKATSYIKAIASSGRTLLALIND 966 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 ILDLS+IEAG+ +L +++ ++ E + + +A EKN+ + ++DP L + DE Sbjct: 967 ILDLSKIEAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIMTDEV 1026 Query: 367 GMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPT 419 +RQ++ N++ N++KFT G R+ + Y I+I D G GI+ + Sbjct: 1027 RLRQILFNIVGNSIKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISREDQHK 1086 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q G GLGL I + ++ GG + S+ +G LP Sbjct: 1087 IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140 >gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1058 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 180/429 (41%), Gaps = 24/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 +++ + + ++ LI + L + + + + + Sbjct: 248 MILPQGLSHWFDMHTDIIFVLIGIGSGVFTLV----FLEAKHTAPKTLPFIKVSIGFLAV 303 Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS----------ISALSNFMLPYAVFLS 166 +GLC +++ L P + A + + F + Sbjct: 304 MGLC-SMINLFPPIWQNAAVYVVSMLAISCYTYAGFESYSNQFYAARYFIFAWSILATCA 362 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + + L +AL + + +++ + + I Sbjct: 363 LIGMFSLVDMLPSNFITTYCFQFGVFLESALFSLALMDKSRHQLQLEVQQATNDLRNNIE 422 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +E D RK A + KS+FLA+MSHE+RTPLNAILGFS+ ++ + Sbjct: 423 LVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQADF----SAD 478 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ I I+ + +L+ ++N++LD+S+IEAG+ +++ S+ +++ E I ++ A K Sbjct: 479 KRDQINIINAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLK 538 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQY--- 402 +E I+P + D +RQ++ NLL NA+KFT G + ++ G G + Sbjct: 539 GLEFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKFTDT-GHIGLSASGKLLEHGIFELN 597 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I I+D G GI+ + + T+F Q A+ + QG GLGL I + ++ GQ ++S Sbjct: 598 IKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSP 657 Query: 463 REGVEVIAI 471 +G Sbjct: 658 GQGSVFNVT 666 >gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1767 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 + V ++T ++ ++ ++ E K LSDE Sbjct: 968 LAEGRVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTE-LKLLSDEL 1026 Query: 238 --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ + LL++IN+ILD S+IEAG+ ++ L ++ + M +A K +E+ + Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410 P++ ++ D + QV++NL++NA+KFT G V +++ + S++D+G Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ + + SF Q + G GLGL I + ++ GG + S+ G Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 471 I 471 Sbjct: 1262 T 1262 >gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] Length = 508 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 149/331 (45%), Gaps = 8/331 (2%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV--KILSC 217 V + + I+ + T L +++ + ++ ++ Sbjct: 181 RITVGAFITTLFLTFLLGFILVRYTNRSFKRLQKGTELIGAGDLSFRIQTADQSGELADL 240 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 +D+ +L A +++A+ N AKS FLA++SHELRTPLNAI+G+SE+I+ E Sbjct: 241 GRAFNDMSEKLANAIGEVQMAKEQADSANAAKSTFLANVSHELRTPLNAIIGYSEMIQEE 300 Query: 278 TMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +N + +E + I SG+ LL LIN++LDL++IE G+ + + I + Sbjct: 301 VNDGEAINKDQLQEDLTKIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTV 360 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + E+ I L + D RQ++ NLLSNA KFT G + + G Sbjct: 361 ADSMAPLLNTQGNEMCWDIQGPLPCIHTDATKFRQIVTNLLSNANKFTEA-GSITIRAGI 419 Query: 396 TSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 T + Q +I ++D G G+ + ++ + +F Q + S G GLGL + Q GG Sbjct: 420 TDSQEQIWIEVRDTGIGMTDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGG 479 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 S G I LP L PED Sbjct: 480 DITASSTPNVGSSFIVTLPVN--LELDPEDA 508 >gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 855 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNPTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 882 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 142/268 (52%), Gaps = 10/268 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L + E + ++ + + AE + KS FLASMSHE+RTP+NA++G ++ Sbjct: 368 RTLQGVFAAARDVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIAD 427 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + P +Y+ RSG +LLNLIN+ILDLS++EA + +L ++ SL D + Sbjct: 428 LLAKTALTP----EQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHL 483 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + I M+ +AQEK + + +I P +S + D +RQV+LNLL NA+KFT G+V + Sbjct: 484 EKAIEMVAPKAQEKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQA-GQVSL 542 Query: 392 TVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + S+ D G GIA ++ V F Q + G GLGL I++ Sbjct: 543 KVERDADGSVPTALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKR 602 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ GG+ + S L +G +P Sbjct: 603 LVELMGGRIGVTSTLGQGSVFAFSVPFE 630 >gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] Length = 493 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 90/289 (31%), Positives = 152/289 (52%), Gaps = 12/289 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + +K L ++ ++ R+ AE+ N+AKS+FL++MSHELRTPLN Sbjct: 130 LHELELKNEELANHGTLLEEKVIRRTRDAERAREDAEKANVAKSQFLSNMSHELRTPLNG 189 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG+++V++ + YK + I G+HLL +IN+ILD+S+IEAG+ +L + Sbjct: 190 VLGYTQVLQN---ASDLQDKYKGSLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYDEV 246 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 ++ +V + +L+ +A EK + + +DP + + +D +RQ+++NL+ NAVK+TA Sbjct: 247 DVLKVVSDTEDILRYKALEKGLSLNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYTAS 306 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V + + SG SI D G GI + + V +F Q E G GLGL I Sbjct: 307 GG-VELKLK-KSGDMIKFSIIDTGIGIPKDKQSHVFEAFRQDEGG--RQEGGTGLGLAIC 362 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHESTQ 490 ++ GG+ + S+ +G P +V + ES++ Sbjct: 363 VKLVEAFGGEIGLESEEGKGSTFWFTHPANFDGVKVKLQEKVETAESSE 411 >gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 430 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 3/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + K+ +A+MSHE++TPL +I GF+E + M + ET + ++ I Sbjct: 188 ELKRLDQVKAELVANMSHEIKTPLTSIKGFAETLLDGAMD--DRETCRRFLTIIDSEADR 245 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + LIN+ L LSR+E+ +S I+L +++ + M+ A+ KNI++ + Sbjct: 246 MSRLINDSLTLSRLESQDRNISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDMK 305 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + +E M Q++LNL+ NA+K+T GG+V +T+ G +IS+KD G GIA+ +P + Sbjct: 306 IDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIK-DEGEDAFISVKDTGIGIAKEHMPRL 364 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + G GLGL I + ++ + G + S+L G E I LP Sbjct: 365 FERFYRVDKGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPK 418 >gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1002 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 89/251 (35%), Positives = 150/251 (59%), Gaps = 12/251 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + +E ++A NLAKS+FLA MSHELRTPLNAILGF++++ + + Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNR---DSSLSSQQQ 566 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+G I+RSG+HLL+LIN++L++SRIEAG+ L+++ +L ++++ +L L+A K + Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQ 401 E+ D L + DE +RQ+I+NL+ NA+KFT + G + + + +T Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHV-GHIDLYLSVLSHQPYTKEMML 685 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + +KD G GI + E+ T+ +F Q +S +G GLGL I++ GG ++S+ Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744 Query: 462 LREGVEVIAIL 472 L +G + Sbjct: 745 LGQGSTFTCTI 755 >gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1002 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 89/251 (35%), Positives = 150/251 (59%), Gaps = 12/251 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + +E ++A NLAKS+FLA MSHELRTPLNAILGF++++ + + Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNR---DSSLSSQQQ 566 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+G I+RSG+HLL+LIN++L++SRIEAG+ L+++ +L ++++ +L L+A K + Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQ 401 E+ D L + DE +RQ+I+NL+ NA+KFT + G + + + +T Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHV-GHIDLYLSVLSHQPYTKEMML 685 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + +KD G GI + E+ T+ +F Q +S +G GLGL I++ GG ++S+ Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744 Query: 462 LREGVEVIAIL 472 L +G + Sbjct: 745 LGQGSTFTCTI 755 >gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein [Pedobacter sp. BAL39] gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein [Pedobacter sp. BAL39] Length = 1160 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 164/383 (42%), Gaps = 18/383 (4%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 L+ ++ + + + + + I ++I++ + A+F Sbjct: 346 HLFLLPIQYQKQTLAVIEFGLYQQPEEKTMLLLNAISESIGVAINSALARIQMRALFEET 405 Query: 168 FPVVVALSTQAIMSMHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 L +Q + + L + L ++N ++ + ++ Sbjct: 406 QQQAEELESQQEELRTTNEELMYKTDQLQASEEELRVQQEELRQTNAELEEKALQLEERN 465 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +E A+ K E + KS FLA+MSHELRTPLN+IL + +++ L NE Sbjct: 466 LSIEQAREAISLKAKELEVSSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NE 524 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +Y G IH +G LL LIN+ILDLS+IE+G+ +L + + + A+ Sbjct: 525 DQIKYAGVIHNAGNDLLTLINDILDLSKIESGKVDLILEPVKPESVAYSMESLFSELAKS 584 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------- 395 K+IE + +L S+ D+ + QV NLLSNA KFT G++ ++ Sbjct: 585 KHIEFSTLLGNNLPDSIITDQSRVEQVAKNLLSNAFKFTPEQGKITFSIQRAAAGTLFYS 644 Query: 396 -----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 TS I++ D G GIAE + + +F Q + G GLGL I++ + Sbjct: 645 DQLKDTSEDILAIAVTDTGIGIAESKQKLIFEAFQQEDGSTSRKYGGTGLGLSISKELAN 704 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 GG+ ++SK EG +P Sbjct: 705 IMGGEIQLKSKPGEGSTFTFFIP 727 >gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] Length = 1640 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 12/258 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E++ +E ++RA+ + AKS FLA+MSHE+RTP+NAI+G S + +G ++N Sbjct: 1032 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEISN 1087 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI +HRSG LL++IN+ILD S+IEAG+ + + ++ I +++ +A Sbjct: 1088 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMESKAD 1147 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +++ IDP L + + D + QVILNL+ NA+KFT G V + V + + Sbjct: 1148 EKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFT-SHGNVTLNVTHLESNDRSV 1206 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S + D G GI+E + +F Q G GLGL I+Q ++ G + + Sbjct: 1207 SMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLNISQKLVQAMGSKISVA 1266 Query: 460 SKLREGVEVIA--ILPNT 475 S L +G E LP + Sbjct: 1267 SVLGKGSEFSFVLTLPRS 1284 >gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] Length = 896 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T + Sbjct: 488 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DE 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y + + + LL LINEILDLS+IE+G E + + + L + +E R Sbjct: 544 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 E +E+ + + D+ + QVI NL+ NA KFT G H++ G G+ Sbjct: 604 E-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTSG---HISYGYRREGKYVAF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA ++ V F + + QG GLGL I ++I+ GG + S++ Sbjct: 660 HVTDTGMGIAPDKVDRVFERFVKVNN----FAQGTGLGLSICKTIIERLGGNISVTSEVG 715 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G +LP E E Q Sbjct: 716 KGTTFTFVLPLESTSKTEAEKKEEDNQ 742 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 13/285 (4%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + +I + + + + E A E ++ AE N AKS FLA+M Sbjct: 723 EPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELANRAKSSFLAAM 782 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLN ++G +++E + ++ + S L+ +I+++LD S+IEA Sbjct: 783 SHEIRTPLNGVVGTIDLLEHTRL----ESNQRDMVRTARDSSLTLMGIIDDVLDFSKIEA 838 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ EL ++ +SL +V C+ +Q A + NIE+ +P++ V D +RQ++LNL Sbjct: 839 GKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNLT 898 Query: 377 SNAVKFTA-----IGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 NA+KF+A GRV V+ +S+KDNG G++ + F Q Sbjct: 899 GNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQA 958 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I++ ++ GG + S+L +G L Sbjct: 959 ESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVAL 1003 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 37/281 (13%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + EL A+ + ++ AEE AKS FLA+MSHE+RTP+N ++G + ++ + Sbjct: 375 RDVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDS- 433 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y + S + LL +IN+ILD S+IEAGR ++ L ++R+ M+ ++ Sbjct: 434 ---EQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVK 490 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A+EK +E+ +DP++ V D +RQ+++NL+ NAVKFT G V + V + Sbjct: 491 AEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFT-EHGEVEIRVSKSEVVDQ 549 Query: 398 -----------------------GRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIA 430 G + + I+D G GI + + ++ SF Q + Sbjct: 550 RSEVSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDAS 609 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + GG + S +G Sbjct: 610 TTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFT 650 >gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39] Length = 846 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 9/252 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +E KRAE N +KS FLA+MSHE+RTP+NAILGF ++++ G + +E + Y+ Sbjct: 349 ALEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDA 404 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I G+ L+ LI++ILDLS+IEAG+ +L ++L +++E + A K + + Sbjct: 405 IAAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQIN 464 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDN 408 I+P++ + DE +RQ++ N++ NA+KFT G + V + I I D Sbjct: 465 IEPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADT 524 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+ + + +F Q G GLGL I + + GG+ + S+L G Sbjct: 525 GMGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQLGLGSVF 584 Query: 469 IAILPNTRVLNF 480 P+ ++ Sbjct: 585 TFAFPDVQITQS 596 >gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium] Length = 834 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 148/273 (54%), Gaps = 1/273 (0%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + A D I + + ++ + AE N AK+ FLA+MSHELRTPLN+ Sbjct: 559 VQRDTQGRPERMAGTDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHELRTPLNS 618 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GFS+++ ++ GP+ Y EY DI+ +G HLL+LIN+ILD+SRIE L+E I Sbjct: 619 IIGFSDILVNQSFGPMGVPEYVEYARDINSAGSHLLSLINDILDVSRIEVEALSLNEQRI 678 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + C ++ RA+ + + + + ++ADE+ ++QV+LNLL+N++KFT Sbjct: 679 DAAHMANSCQRLVLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANSIKFTEP 738 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V + ++ D G GIA +I +++FGQ + +G GLGLP++ Sbjct: 739 GGTVTLKGMLDEEGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTRRYEGAGLGLPLS 798 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + ++ HGG + S+ G V P R + Sbjct: 799 KKLVELHGGGLSLESQPGVGTTVTIRFPKERTV 831 >gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1340 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+E + AK FLA+MSHE+RTP+NAI+G S + + N Sbjct: 577 VTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHLALNADL----N 632 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I + + LL +IN+ILD S++EAG+ + L +++ ++ ++A+ Sbjct: 633 PKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDNLTNIIAVKAE 692 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 EK +E IDP + ++ D + QV++NL NA+KFT G V V V G Sbjct: 693 EKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDS-GEVVVGVKLLNKSEDGL 751 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D+G G+++ + + SF Q +I G GLGL I++ ++ GG+ + Sbjct: 752 NLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVT 811 Query: 460 SKLREGVEVIAIL 472 S +G L Sbjct: 812 SDEGQGSTFSFTL 824 >gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein [Geobacter bemidjiensis Bem] gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 1362 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 111/378 (29%), Positives = 179/378 (47%), Gaps = 10/378 (2%) Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-----IYKSATLLIALSISALSNF 157 + ++ L G++ + L ++ P +P I + + +S+ A Sbjct: 433 LRRFQRRHLEGELGVILASGTVSCYTPQEGSPLRFATSFGEIVPAEIATVPISVDAEIRA 492 Query: 158 MLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS-FFTYITYHLFKSNVKIL 215 + A F P V L + L+G L+ L + + +++ Sbjct: 493 FVSIASERPFPPKVHEILELVQMPLGAAFARILSGEDVRLLANELALKNEELTQQSEELV 552 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E EL + D +++ EE KS FL++MSHELRTPLN++L S V+ Sbjct: 553 QQSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLA 612 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ L + K Y+ I R+G+HLL+LIN+ILDL++IE+GR E+ +SL + E Sbjct: 613 VQGGSRLTEDE-KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEV 671 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + L + A+EK I I + +L + D K +RQ++ NL+ NAVKFTA G V V +G Sbjct: 672 VDGLSVLAREKGIAISLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAE-GAVTVRLGA 730 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G + ++D G GIA + T+ F Q + + +G GLGL I + GG Sbjct: 731 -EGEEFLVEVEDTGIGIAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGD 789 Query: 456 FLIRSKLREGVEVIAILP 473 +RS+L +G LP Sbjct: 790 VSVRSELGKGSVFTLRLP 807 >gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1765 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 14/301 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 ++ + ++T ++ ++ ++ E K LSDE Sbjct: 968 LVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTE-LKLLSDEL 1026 Query: 238 --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I Sbjct: 1027 LVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL----DKKQKNYLEKIE 1082 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ Q LL++IN+ILD S+IEAG+ ++ + L ++ + M RA +K IE+ + Sbjct: 1083 RASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVA 1142 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410 P++ + D + QV++NL++NA+KFT G V +++ + S++D+G Sbjct: 1143 PNVPRHLLGDPLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQNDDVVLRFSVRDSGI 1201 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ + + + SF Q + G GLGL I++ ++ GG + S+L G Sbjct: 1202 GLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFF 1261 Query: 471 I 471 Sbjct: 1262 T 1262 >gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1964 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 25/381 (6%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G ++ L + +LT + T IA+ ++ ++ M + + L Sbjct: 1111 FEGAITGVIELASFHYFNEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAQELQ 1170 Query: 176 TQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-AELEVAKS 233 TQ + A + + L +A L E+E + Sbjct: 1171 TQQGELRETNQRLEQQAQSLKASEELLKKQQEQLQQTNEALEEKARLLSLQNEEVERKNA 1230 Query: 234 LSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ L Sbjct: 1231 EIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNVENNLT-PK 1289 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 EY IH SG LL LIN+ILDL++IE+G + + L ++ + + A +K Sbjct: 1290 QVEYAATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDRAFRQIAHDK 1349 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRG 400 ++ DP L ++ D K ++QV+ NLLSNA KFTA G+V + V GW+ Sbjct: 1350 GLDFEINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAK-GQVSLEVEPAYQGWSQDHE 1408 Query: 401 QY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 S+ D G GIA + + +F Q G GLGL I++ I Sbjct: 1409 ILNQAELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLSISREIARLL 1468 Query: 453 GGQFLIRSKLREGVEVIAILP 473 GG+ + S+L G LP Sbjct: 1469 GGEITVISRLGHGSTFTLYLP 1489 >gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1282 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-------RKRAE 243 G L IT + ++ E+ + A + + AE Sbjct: 697 GTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQLEAAIVRAERLAREAE 756 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AKS+FLA+MSHE+RTP+NAI+G + + +++ ++ + S + LL Sbjct: 757 SASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTR----DDDKRGRFLDTVRHSAESLLG 812 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 L+N+ILD S++EAG+ +LS + S ++ E + LQ+ A EK + + I P+L + Sbjct: 813 LLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLAMDIAPNLPPCLV 872 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGE 416 D+ +RQ++LNL+ NA+KFTA G + + + S + ++ D G GIAE + Sbjct: 873 GDDLRLRQILLNLVGNAIKFTAA-GSITLRITQEQPSSGGSEPLIHFTVIDTGIGIAEEK 931 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + SF Q + G GLGL I + ++ GG+ + S++ +G ++P Sbjct: 932 RALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRINQGSAFHVLVPLPV 991 Query: 477 VLNFIPED 484 +P D Sbjct: 992 CDQPLPAD 999 >gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 982 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 136/265 (51%), Gaps = 9/265 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + AE N AKS FL++MSH++RTP+NAI+GF+ + Sbjct: 449 TADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNIDDKN--- 505 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+Y+ S HLL+LIN++LD+SRIE+G+ L E ++L D++ + ++ + Sbjct: 506 RVKDYLAKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYA 565 Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399 K +E++ +D + V+ D+ + QV+LNLLSNA+KFT GG V V V +G Sbjct: 566 KQLELYMDAMDVTDEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRVRQLAGAVRGCG 625 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +KDNG G+++ + F + + S QG GLG+ I ++I+ GG ++ Sbjct: 626 QYEFRVKDNGIGMSQEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQ 685 Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484 + +G E I +P P + Sbjct: 686 TAQGKGSEFIIRVPMRAQAEHRPVE 710 >gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC BAA-894] gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894] Length = 919 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +LI ++ + L + L V P+ ++T + LD + G + L Sbjct: 177 IAISLLMMLICMACAVLFAWRLMRDV---TAPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL++IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTP----TQRDHLNTIERSANNLLSIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L A +K +E+ + + V D Sbjct: 347 DVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHI 516 >gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 914 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T + Sbjct: 506 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DE 561 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y + + + LL LINEILDLS+IE+G E + + + L + +E R Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 E +E+ + + D+ + QVI NL+ NA KFT G H++ G G+ Sbjct: 622 E-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTTG---HISYGYRREGKYVAF 677 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA ++ V F + + QG GLGL I ++I+ GG + S++ Sbjct: 678 HVTDTGMGIAPDKVDRVFERFVKVNN----FAQGTGLGLSICKTIIERLGGNISVTSEVG 733 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G +LP E E Q Sbjct: 734 KGTTFTFVLPLESTSKTEAEKKEEDNQ 760 >gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] Length = 1316 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 153/283 (54%), Gaps = 10/283 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L Q ++ ++ EL AK ++++ K AEE AK +FL++MSHE+RTP+NAI+GF+ V Sbjct: 904 ALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQQFLSNMSHEIRTPMNAIIGFTNV 963 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + NE KEYI I SG+ L+ LIN+ILDL+++EAG+ S L V Sbjct: 964 VMKTKL----NEAQKEYINAIKVSGESLIILINDILDLAKVEAGKMVFEHSPFRLFSSVS 1019 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + + + + QEKN+ + ++ D ++ + D +RQ++LNL+SNAVKFT G++ V Sbjct: 1020 DMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLRQIMLNLISNAVKFTNA-GKITVR 1078 Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V S+ D G GI E + + +F Q + G GLGL I + + Sbjct: 1079 VDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQIAPETTRLNGGTGLGLAIVKQM 1138 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + GG ++SK+ +G L +V + + +N+ + Sbjct: 1139 VKLQGGNVKVKSKVDKGSTFSFSLSFKKVKSLVAIENNHKVDF 1181 >gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] Length = 727 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 585 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 4/235 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GF+E + M + T + ++ I + + Sbjct: 351 ELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM--KDERTLEHFLSIIWKESER 408 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ ++LDLS+IE ++L + L ++ E IM Q +A+EK I+ S+ Sbjct: 409 LQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFRMHAAKSI-Y 467 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D ++Q+ +NL++NA+ +T GG+V V + + +KD G GI E EIP + Sbjct: 468 MEGDANRLKQIFINLITNALTYTPKGGQVEV-IAEEQEEETLVHVKDTGIGIEEAEIPRI 526 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G ++S + +G P Sbjct: 527 FERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPKQ 581 >gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1233 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + + S I + + E + AE N+ KS FLA+MS Sbjct: 671 LWVLSRGRVVEFTADGMPSRMLGTHKDITRQKSNEVALLEAKHDAELANMYKSEFLANMS 730 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NAI+G ++ + ++Y+ S + LL +IN+ILD S+IEAG Sbjct: 731 HEIRTPMNAIIGMLQLASRTQLTL----QQQDYLNKAGFSAESLLRIINDILDFSKIEAG 786 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376 + EL SL ++ I M L AQEK +E+ + ++ D + QV++NLL Sbjct: 787 KLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLL 846 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 SNAVKFT G + + R IS ++D G GI+ + + +F Q + Sbjct: 847 SNAVKFT-QDGEIELGCEDVGERDTQISLKFWVRDTGIGISREQQANLFDAFSQADGSTT 905 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG + S+ ++G L Sbjct: 906 RQYGGTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTL 945 >gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1853 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 137/297 (46%), Gaps = 10/297 (3%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244 + + ++ + L +SN ++ + AE ++ LE S + + EE Sbjct: 1387 VGFVLNMISSNMRMEGLLLELKRSNAELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1446 Query: 245 -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + KS FLA+MSHELRTPLN++L S+++ G L E K + ++ SG Sbjct: 1447 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVK-FASTVYTSGH 1505 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LINEILDLS+IEAG+ + L + + + A+ K + ++ P L Sbjct: 1506 ELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMAPDLP 1565 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D ++Q++ NL+SNA KFT G V + V +G +++D G GI + Sbjct: 1566 DRIHTDPTRLQQILKNLISNAFKFTER-GEVVLEVSPAAGGALAFAVRDTGIGIPADKQK 1624 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q G GLGL I++ I GG + S G +LP Sbjct: 1625 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLPAR 1681 >gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 585 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 125/234 (53%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + FLA++SHEL+TP+ +I GFSE + M N + + ++ I + + Sbjct: 353 ELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAM--KNQKFCEHFLHIILKESER 410 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + +LI ++LDLS+IE ++L+ + + D++ + ++L +AQ+K I + S Sbjct: 411 MQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMD-AMQHVS 469 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++Q+ +NL+ NA+ +T +GG V V++ + + Y+ + D G GI++ EIP + Sbjct: 470 VIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSL-FEDEQNAYVQVADTGIGISKEEIPRI 528 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G + SK+ EG LP Sbjct: 529 FERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALPK 582 >gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 815 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 16/342 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYIT 204 + ++ + + + P + ++ + G+L A + Sbjct: 285 VMVTKAPVISNHPARDPRAGGIPAGHPPLRSFLGLPIMMGDHMVGLLGLANRPGGYDEAL 344 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + ++ + E + + ++ AEE N AKSRFLA++SHE+RTP+ Sbjct: 345 VAFLQPFLQTCAGIIEAHRVEQLQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPI 404 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 A+ G+SE++ + ++ + I R+ +HLL L+++ILD S+IEAG + Sbjct: 405 AALCGYSEMVLE---PQMEEPERRQTLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHC 461 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 +S I+ + + + RA+ K I I +I + ++ D +RQ++LN LSNA+KFT Sbjct: 462 PVSPRWILEDLLTTMGGRARSKGIAIHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFT 521 Query: 384 AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 R+ + + + +++D GPGIA + + F Q +I Sbjct: 522 DRDKRIDLILQVEPVPASGTLHSAANRLVFTVEDQGPGIAPENLSRLFQPFWQVDGSITR 581 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I+Q + GG + S++ G LP Sbjct: 582 RYGGTGLGLSISQRLAELLGGVIEVESEVGRGSRFRFALPLQ 623 >gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 940 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ + ++AE ++ AKS FL+ MSHE+RTP+NAI G ++++ +E P Sbjct: 542 LTYRSKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDG 601 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E + IH S Q++L+LIN+ILD+S+IE G+ + SL +++ I M++++A Sbjct: 602 A---REKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQA 658 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 +EK I + V D +RQV+ NLLSNA KFT GGRV +TV S Sbjct: 659 EEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTG 718 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+KDNG GIA+ + +F Q + + +G GLGLPI+ SI+ GG ++ Sbjct: 719 EYFFSVKDNGIGIAQDRQKQIFEAFEQLGAS-SARSEGTGLGLPISSSIIKAMGGNLMVE 777 Query: 460 SKLREGVEVIAIL 472 S+ +G E L Sbjct: 778 SQTGKGSEFYFRL 790 >gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] Length = 940 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ + ++AE ++ AKS FL+ MSHE+RTP+NAI G ++++ +E P Sbjct: 542 LTYRSKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDG 601 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E + IH S Q++L+LIN+ILD+S+IE G+ + SL +++ I M++++A Sbjct: 602 A---REKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQA 658 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 +EK I + V D +RQV+ NLLSNA KFT GGRV +TV S Sbjct: 659 EEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTG 718 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+KDNG GIA+ + +F Q + + +G GLGLPI+ SI+ GG ++ Sbjct: 719 EYFFSVKDNGIGIAQDRQKQIFEAFEQLGAS-SARSEGTGLGLPISSSIIKAMGGNLMVE 777 Query: 460 SKLREGVEVIAIL 472 S+ +G E L Sbjct: 778 SQTGKGSEFYFRL 790 >gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 784 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 5/277 (1%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259 + + + Q + L + ++D E + RAE N AKS FLA++SHE Sbjct: 506 LVDSEKRLKATVTDLQKSRQTLEVQARQLVEMADKYQEEKTRAEAANKAKSEFLANISHE 565 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFS+++ E GP+ + Y +Y DI+ SG +LLN+IN+ILD+S+IEAGR Sbjct: 566 LRTPLNAIIGFSDIMTQEMFGPVGTDRYSDYCKDIYSSGTYLLNVINDILDMSKIEAGRM 625 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 + ++ + + ++ A EKNI + + ++ SV AD++ ++Q++LNLL+NA Sbjct: 626 TIETETVNASESAEDASRIVTGAATEKNITVTTDVVENV-SVHADKRALKQILLNLLANA 684 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT G V + G + + D G GI+E +I + F Q QG G Sbjct: 685 VKFTPDNGTVTLKARPR-GDKLHFEVIDTGIGISERDIERLAQPFVQVENQFTKTHQGSG 743 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL IA+S++ HGG +I+S++++G V LP Sbjct: 744 LGLAIARSLVELHGGALVIKSEVKKGTTVSFTLPLAE 780 >gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] Length = 842 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/289 (35%), Positives = 154/289 (53%), Gaps = 4/289 (1%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 M A ++ ++ ++ + A + +L + + +AE N AK Sbjct: 542 LVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAESANKAK 601 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLNAI GFSE++ E GPL ++ YK Y DIH SGQHLL LIN+IL Sbjct: 602 SEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDIL 661 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+S+IEAG+ L ++ L D+ + + +++ RA+ +++ P L + AD + ++ Sbjct: 662 DMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEADYRAVK 720 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 QV+LNLLSNA+KFT G V V V +S+ D G GIA+ ++ + F Q Sbjct: 721 QVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQ 780 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL + +S++ H G + S EG V LP Sbjct: 781 VESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829 >gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 11/292 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++ V I E + ++L + ++ AE N +KS FLA+MSHE+RT Sbjct: 235 LQLAVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRT 294 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G ++ P +Y+ I S LL LIN+ LDL+R+E G+ + Sbjct: 295 PMNVIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAID 352 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + L DI+ + ++ RA EK +++ + P++ + D + QV++NL SNA+K Sbjct: 353 QIPFDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIK 412 Query: 382 FTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 F+ G V + ++++D G GIA ++ T+L F Q + G Sbjct: 413 FSDK-GEVSLNFEMADSTADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDG 471 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---FIPEDNH 486 GLGL IA ++ GG+ + S+ +G P R+ IPE Sbjct: 472 TGLGLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQRKASIPEQED 523 >gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 627 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 110/383 (28%), Positives = 177/383 (46%), Gaps = 19/383 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + ++ I + LI + SALS L V ++ P + + A Sbjct: 234 MSDVISRHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGG 293 Query: 183 HVLDISLAGMLATA--------LSFFTYITYHLFKSNVKILSCQAEKD-----DLIAELE 229 + A + F ++ ++S E D + + + Sbjct: 294 EARSVEFRVRREVARDDRGRPSAAEFIWLEMRCRPFETGVVSAAGEADVVAVMRDVTDRK 353 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + +E R A + KSRFLA+MSHELRTPLNA++GFS++I E L E KE Sbjct: 354 QQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPERRKE 413 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I+ SGQHLL+++N ILD+S+IE+G +E++ + + C +L L+A+E I+ Sbjct: 414 YAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARENGID 473 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + +L + D + +Q++LNL+SNA+KFT GG V V G + + D G Sbjct: 474 LVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDA-MVEGARLVLRVSDTG 532 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA ++ + F Q + +G GLGL I +S++ HGG ++S++ G V Sbjct: 533 VGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKSEVDRGTTVT 592 Query: 470 AILPNTR-----VLNFIPEDNHE 487 LP + V P E Sbjct: 593 VSLPLAQPALTNVTPLAPPQPTE 615 >gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42] gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42] Length = 579 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M + + +++ I + + L +L Sbjct: 349 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDEKALSDFLSIILKESERLQSL 406 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS++E + + + I+ E +L+ +A+EK I + V D Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL +NA+ +T G V ++V I + D G GI + EIP + F Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISV-HVKETVVDIKVSDTGIGIQKEEIPRIFERF 525 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ + S+ +G L Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTL 573 >gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase [Arthrospira platensis str. Paraca] Length = 812 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 27/344 (7%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI-------TYHLFKSNVKILSCQA 219 + + + T ++ +L + A F + T L ++ ++ S Sbjct: 354 IVAIFLGVYTSRWIAEPILQLIKASEAIANGEFTHRVDIKKIKETEQLSQTFNQMSSQLQ 413 Query: 220 EK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + L +E + + ++ AE N AKS+FLA MSHELRTPLNAILGF++++ + Sbjct: 414 ELFETLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQI 473 Query: 279 --MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 N +++++ I RSG+HLL LIN++LD+S+IEAG+ L+ + L ++ Sbjct: 474 SLENNHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLE 533 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 M +RA + +++ P+L + +DE+ +RQV++NL+ NAVKFT G V + Sbjct: 534 EMFSIRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFT-ENGSVTLHSQV 592 Query: 396 TSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 Q +++D GPGIA +I + F Q K QG GLGLPI Sbjct: 593 IDPPNQIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPI 651 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 +Q + GG + S L G + RV PE+ S Sbjct: 652 SQQFVQLMGGDISVSSTLGVGSVFKFKI---RVSLGYPEEIASS 692 >gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 606 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 130/268 (48%), Gaps = 10/268 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + ++ AE + + ++ AE + AKS FLASMSHE+RTP+N +L Sbjct: 191 RDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTPMNGVL 250 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ ++ +E +EY+ + S + LL+LIN+ILD S+IEAG EL + L Sbjct: 251 GMLDLAMTTSL----DEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQVFRL 306 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + M RA E+N+E I P + + D +RQ+++NLL NA KFT G Sbjct: 307 SKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFTDQ-G 365 Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +V ++V S++D GPGI E + SF Q + QG GLGL Sbjct: 366 QVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGLGLA 425 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + GG +RS EG + Sbjct: 426 ICKRLTGLMGGDIKVRSTPGEGSTFVFS 453 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + +K A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 LTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ I ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT G + ++ Q Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQ-GEIVISARVRQLNEQQV 757 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++KD G GI + ++ + +F Q +I G GLGL I++ ++ GG+ Sbjct: 758 TLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEISAH 817 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 818 SEEGKGSTFEFS 829 >gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] Length = 621 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 155/297 (52%), Gaps = 7/297 (2%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---DETRKRA 242 + G L + T + +K + +L E L+ + + RA Sbjct: 310 RPTAEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNLERSQEQLSELARKYEAEKIRA 369 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + AKS FLA+MSHELRTPLNAI GFSE++ E GPL + Y++Y DI SGQHLL Sbjct: 370 EGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQHLL 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 LIN+ILD+S+IEAG+ L SL +I + + +++ RA+ + + L V Sbjct: 430 ALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTLVLDF-VELPEVE 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPT 419 AD + ++QV+LNLLSNA+KFT GGR+ + + +S++D G GIA ++ Sbjct: 489 ADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDLER 548 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q +QG GLGL + ++ + HGG ++S +G LP + Sbjct: 549 LARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQ 605 >gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 1004 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 12/249 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ AE + AK+ FL MSHELRTP+N I+G E++ + +E + YI Sbjct: 750 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTEL----DEDQQNYI 805 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + S LL+++NEILD S+IE G L+ I L ++ + + +A+EK + + Sbjct: 806 HILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKEKGLSLS 865 Query: 352 QKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYIS 404 I+ + + D +RQV++NL+SNA+KFT G + + V T Sbjct: 866 FNINSANVPDVIIGDALRLRQVLVNLISNAIKFTHE-GSITLNVEGLRRTGTQEFTLAFQ 924 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA + TSF Q ++ G GLGL I++ ++ GG + S+ Sbjct: 925 VKDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENV 984 Query: 465 GVEVIAILP 473 G +P Sbjct: 985 GSSFYFTIP 993 >gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 938 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 13/270 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q D+L A + + + RAE N AKS FL+ MSHELRTP+NA++G +++ Sbjct: 372 ELQKANDELEARVTQRTQEFQQAKVRAERANQAKSEFLSMMSHELRTPMNAVIGSLDLL- 430 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 N I S +L+ ++N+ILD+++IE+G+ +L + S+ +++ Sbjct: 431 ---TLSKQNPESMSLIETATTSATNLIYILNDILDINKIESGKMQLEQRDFSITEVIDNV 487 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA----IGGRVH 390 + + A +K + + DP + + D +RQ++ NLL NA+KFT G + Sbjct: 488 VQVFLPLAHKKRLNLHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFTHTVEGKPGEIR 547 Query: 391 VTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + SI DNG GI + + T F Q + G GLGL I+ Sbjct: 548 LITNISEHNDIIYKISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKYGGTGLGLAISG 607 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ + GG+ + S +G +LP R Sbjct: 608 NLTSMMGGEIKLNSTPEQGSTFTVVLPFWR 637 >gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1095 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 134/252 (53%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + +VA+ + ++ AE N AKS FLA+MSHE+RTPLN I+G +++++ E + Sbjct: 379 INDKKVAEQELIKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENLPKH-- 436 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ ++ + HLL+LIN+I D SRIE+G ++ SL D + E + +L RA+ Sbjct: 437 --VVEYVKHLNMASHHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAK 494 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 EKNIE+ +DP + + D ++Q++ NLL NA+KFT +G V + Sbjct: 495 EKNIELTVFVDPLIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSVD 554 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 IKD G GI+ + + T F QG ++ G GLGL I + ++ G S Sbjct: 555 ILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFIS 614 Query: 461 KLREGVEVIAIL 472 + +G L Sbjct: 615 EPGKGTTFYVTL 626 >gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1157 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 5/377 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 + + + K+ ++ +SI+ + + + +F L Q Sbjct: 360 GVFEIAFQNGLSSRNEGYLKAIADIVGVSINTAQSRTIMHDLFEEVQQQAEELEAQQEEM 419 Query: 182 MHVLDISL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + ML + L +N ++ + ++ +E A+ + Sbjct: 420 RVTNEELMKKTEMLQASEEELRVQQEELRTTNAELEEKASLLEEKNQAIEEARRSISQKM 479 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + E KS FLA+MSHELRTPLN+IL + +++ L + K Y I +G Sbjct: 480 RELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQIK-YSTVIFNAGN 538 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LIN+ILDLS+IE+G+ E+ + + +I+++ + A+ KNI + + ++ Sbjct: 539 DLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNITFTTQQNNNVP 598 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEI 417 + D +QVI NLLSNA KFT+ G V V G+ +SIKD+G GI + Sbjct: 599 EYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKDSGIGIPYDKQ 658 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +F Q + G GLGL I++ + GG ++SK EG E +LP V Sbjct: 659 KLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKSKPGEGSEFTLLLPLEGV 718 Query: 478 LNFIPEDNHESTQYKCY 494 L +D K + Sbjct: 719 LATPIDDADNVPTLKSW 735 >gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 788 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 18/297 (6%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + + I ++ A+ ++ AEE AKS FLA+M Sbjct: 5 IVWVHAAGKLVRDEANGAIRFMYGAYQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANM 64 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NAI+G S + + ++ + YI +HRSG++LL +IN+ILD S+IEA Sbjct: 65 SHEIRTPMNAIIGMSHLALQTKL----DKKQRNYIEKVHRSGENLLGIINDILDFSKIEA 120 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ + L D++ ++ L+A+++ +E+ + P + ++ D + Q+++NL Sbjct: 121 GKMTMESIDFRLEDVMDNLANLVGLKAEDRGLELLFNVAPDIPSALIGDPLRLGQILINL 180 Query: 376 LSNAVKFTAIGGRVHVT---VGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +NAVKFT G + V V + + + ++D+G G+ + + SF Q + Sbjct: 181 GNNAVKFTEK-GEIIVGAELVERSEDQAELHFWVRDSGIGMTPEQCGKMFKSFSQADTST 239 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--------PNTRVLNF 480 G GLGL I+++++ G+ + S+ +G + P RV + Sbjct: 240 TRKYGGTGLGLAISKTLVELMDGRIWVESEAGKGSTFHFHVRVGVQSHPPLRRVFSP 296 >gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1310 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 8/286 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + ++ A+ L L+ A+ +D R RAE AKS FLA+MSHE+RTP+N I+ Sbjct: 589 RFEAELQRQAADMCALAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIM 648 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +E++ + E +++ I S LL +IN+ILD+S++EAGR + Sbjct: 649 GMTELLFDTPL----TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDP 704 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 D+V + +L RA EK IEI IDP L + D +RQ+++NL+ NAVKFT G Sbjct: 705 ADLVEGVVELLTPRAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGS 764 Query: 388 R-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V + + + ++ D G GI +PT+ F Q +I G GLGL I Sbjct: 765 VAVELEAREATDAHLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAI 824 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + + GG + S+L G + LP ++ + Q Sbjct: 825 CRQLSELMGGSIAVESRLGSGSRFLVDLPLALPDEVRDDELSDGMQ 870 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 6/274 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + ++ E + E + + K FLA+ SHELRTPLN ++G S Sbjct: 554 IAVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLS 613 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E + GPL E ++ + I +SG L L+N+ILD S++ EL + L +I Sbjct: 614 ESMLDGVGGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREI 672 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 V +++ + K+IE+ +I +V ADE ++Q++ NL+ NA+KFT G V + Sbjct: 673 VEVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDS-GTVKI 731 Query: 392 TVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 T + I+I D G GI + + SF QG + G GLGL I + Sbjct: 732 TASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQ 791 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ H G+ + S + G LP + + Sbjct: 792 LVELHQGKIWLDSVVDSGSTFSFTLPISEEIPET 825 >gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 3557 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 157/302 (51%), Gaps = 13/302 (4%) Query: 182 MHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 ++ ++L+G++ + + + ++ + + L + + + + Sbjct: 3034 GSLVPVALSGLIVERNGEQYIWSCVEDISQRKQAEVALKEANNQLEQRVLERTAQLQQAK 3093 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + AEE N AKS FLA+MSHELRTPLN I+G++++++ P + +K I I++ G Sbjct: 3094 ELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQR---SPQLSSDHKSNIQVIYQCGS 3150 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LI +ILD+S+IEAGR EL L ++ + + +++A++K++ + SL Sbjct: 3151 HLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERPSSLP 3210 Query: 360 SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIA 413 +V D+K +RQV+LNLL NA+KFT G + V +TS I+D G GI+ Sbjct: 3211 TVINTDQKRLRQVLLNLLGNAIKFT-SLGSIKFRVSFTSSRTNHNGFLQFEIEDTGVGIS 3269 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F Q ++ +G GLGL I+Q ++ G Q + S L G ILP Sbjct: 3270 AEQLDRIFLPFEQV-GSLSQKAEGTGLGLAISQKLLQMMGTQLTVESTLGVGSIFSFILP 3328 Query: 474 NT 475 Sbjct: 3329 IA 3330 >gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] Length = 933 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S + F L + V P+ + + LD+ + G Sbjct: 174 IFSACLVLIMGLLLSGVFAFRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 227 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 228 GELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 287 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 288 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 343 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E + + A EK +EI K+DP + + + D Sbjct: 344 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDP 403 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + ++V S R + ++D G GI+E + + Sbjct: 404 LRIQQVLTNLVGNSIKFTER-GNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLF 462 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q +++ GG+ + S+L +G L Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1118 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 137/271 (50%), Gaps = 9/271 (3%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + I + + RK AE N AKS FLA+MSHE+RTP+N +LG Sbjct: 383 AAAQDVREFYFSGQDITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLG 442 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++ T+ P + +E G SG+ LL +IN+ILD S+IEAG+ +S L+ Sbjct: 443 AVGLLLNTTLTP----SQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLL 498 Query: 330 DIVRECIIMLQLR-AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 V E M+ ++ A++ N+ + + P++ V+ D +RQV++NL +NA+KFT G Sbjct: 499 QAVEEVAGMVAMQPARKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGH 558 Query: 388 R-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + V S IS++D+G GIA ++ ++ F Q + G GLGL I Sbjct: 559 VLIDVEAEALSEDEVSLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAI 618 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ ++ GG +S++ G LP Sbjct: 619 SKQLVQLMGGTIAAKSRVGAGSTFWFTLPLA 649 >gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1000 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 21/275 (7%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I ++ + + ++ AE N AK FLA+MSHE+RTP+NA+LG E++ ++ Sbjct: 418 LQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSL-- 475 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +EY+ H S + LL++I+++LD S+IE + EL + + L ++ I +L Sbjct: 476 --TDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSG 533 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----- 395 +A K +++ I+ L + D ++QV+ N+L NA+KFT G + ++V Sbjct: 534 KAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKK-GEIALSVEVYMPSE 592 Query: 396 ----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +KD G GI ++ + F Q ++ G GLGL I+ Sbjct: 593 RNSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAIS 652 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 ++ G+ + S++ +G + R + Sbjct: 653 SQLVELMEGRIWVESEVGKGCTFYFTVRVKRGESS 687 >gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 736 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 10/273 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 LF + + L I + E D +R++ ++ + K +FLA+MSHE+RTP+N Sbjct: 189 MLFFACLSSLLSFLYITSRIYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMN 248 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LGF+ +++ + + NE +EY+ I +G++LL++IN+ILD+S+IE+G L + Sbjct: 249 AVLGFTHLLQQQPL----NEKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVS 304 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTA 384 SL ++ +M Q +AQEK +++ ID + + + D + QV++NL++NA+KFT Sbjct: 305 FSLRGMMHSLQLMFQPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTP 364 Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V V G +I D G GI+ ++ T+ F Q I G GL Sbjct: 365 Q-GQVTVRVSPVGGNESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGL 423 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GL I + ++ G + S+L +G + LP Sbjct: 424 GLTIVKQLVELQHGTISVESELGKGSTFLVQLP 456 >gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] Length = 882 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI + + ++ AE N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 363 LIQAQKDHERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSRL---- 418 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 N + K+ + DI S LL LIN+ILDLS+IE+G LS S + + V E + M+ +A Sbjct: 419 NSSQKDILSDIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKA 478 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 ++ +E+ + P + S++ DE +Q+++NLLSNAVKFT G V V V + Sbjct: 479 LKQQVELRATLSPDIPDSLYIDEFRFKQILMNLLSNAVKFT-QDGSVSVVVKLMNEGEKA 537 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+ D G GI E ++ + F Q +I G GLGL I + I GG Sbjct: 538 YLHCSVVDTGVGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITAS 597 Query: 460 SKLREGVEVIAILPNTRVLNFI 481 S G ++P V+ Sbjct: 598 STPGLGSRFSFVIPAQSVVETS 619 >gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 792 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 6/279 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 L + + E + ++ T + A N AKS FLA+MSHE+RTP+N + Sbjct: 382 ISDENGNLDRFIAIERDVTEYKRLENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGV 441 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++E E + ++E + I SG HL++++N+ILD+S+IE L S Sbjct: 442 LGLTQILEKEI----TDPNHREVLQLILSSGNHLVSILNDILDISKIENEALTLEHSPFK 497 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 +I+I+ Q EK + P + DE +RQ++LNL+ NA+KFT Sbjct: 498 MIEILSPVKNTYQSLCSEKGLLFEVIDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQK- 556 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G + ++V G +KD G GI + +V F Q + G GLGL I + Sbjct: 557 GSIVISVEVNVGGMCRFEVKDTGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVK 616 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 S++ GG+ L+ SK+ G +LP ++N + Sbjct: 617 SLVELMGGEILVDSKVGRGSTFTVLLPLPSIVNEKKNEE 655 >gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1095 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 17/295 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + Q E LE + R AEE AKS FLA+MSHE+RTP Sbjct: 288 AVGVVRDITEKKEAQEELQRHGRNLERKNVELNAARLEAEEATRAKSEFLANMSHEIRTP 347 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +NAI+G S + + +Y+ +H S Q LL +IN+ILDLS++EAG+ E+ Sbjct: 348 MNAIIGLSYLCLQTDLNN----KQHDYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEH 403 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 +L D+ ++ ++AQEK + + + + D + Q+++NL NA+KF Sbjct: 404 IPFALQDVTDHLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKF 463 Query: 383 TAIGGR-VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 T+ G + + + + + + +IKD G G+ +I + +F Q + Sbjct: 464 TSQGQVMLQIVLAEQTEQTEQTARIHFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFG 523 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFIPEDN 485 G GLGL I++ ++ GG+ + S+ +G + + P+ +P + Sbjct: 524 GTGLGLVISKQLVETMGGEISVESEPGKGSTFMFTINLEKADPSRFEQPAVPSSD 578 >gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 589 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + +T + ++ I + Sbjct: 353 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAM--NDKDTLEYFLSIILKESDR 410 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS+IE + L+ + + +++ E ++L+ +A+EK I++ Sbjct: 411 LQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELY 470 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++AD ++QV +NL++NA+ +T GG V V V + I + D G G+ + EIP + Sbjct: 471 LFADASRIKQVFINLINNAIAYTPAGGEVKVKVEEV-DKEVVIVVSDTGIGMEQDEIPRI 529 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G + S+L +G L Sbjct: 530 FERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKGTAFTVKL 581 >gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 667 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 10/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++A+ + +K AEE KS FL++MSHE+RTP+NAI+GF++++ Sbjct: 263 ITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDLLLSSGFTG--- 319 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ I S +LL ++N+ILD S+IEAG++ L L + + + ++RA+ Sbjct: 320 -QEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLGYLMKTFEIRAK 378 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK+I+ + + V D + Q+++NL+ NA+KFT GG V V+V G Sbjct: 379 EKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVSVHLDKDHGDSI 438 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D+G GI+E ++ + SF Q G GLGL I + I G Sbjct: 439 DLKIDVSDSGIGISEDKLSVIFDSFSQAHNNNAVRNFGGTGLGLSITRKITELMNGSISA 498 Query: 459 RSKLREGVEVIAIL 472 RS L +G +L Sbjct: 499 RSTLGKGSTFTVVL 512 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 9/264 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + ++++AEE + K+ FLA++SHE+RTP+N ILGF+E+++ L Sbjct: 541 EDITEKKKLWVDLIASKEKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKE---PHL 597 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EYI I++SG+ +L LIN+I+D+SRIEAG + + ++ + Sbjct: 598 SGEEQAEYIELINQSGKRMLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPL 657 Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGR 399 A KN+ + + D + Q++ NL+ N +KF+ G V VG+ Sbjct: 658 AANKNLLLSCNNGLSDEECVIETDSAKLTQILTNLVQNGLKFSVEG---EVRVGYIRKED 714 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D+G GI E ++ F Q ++ +G GLGL I+++ + GG + Sbjct: 715 LLEFSVSDSGIGIPESMKESIFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVE 774 Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483 S G I LP PE Sbjct: 775 SGEGNGSTFIFTLPFNPPGVQTPE 798 >gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] Length = 927 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L+I + +S + L Y V P+ + + LD+ + G Sbjct: 175 IFSAGLVLVIGILLSGVFASRLMYDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L +++ E + + A EK +EI KIDP + V D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NL+ N++KFT G + V+V + R I ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLF 463 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 464 QAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514 >gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] Length = 874 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 ++ + + D+ E K + A+ N AKSRFL++MSH+ Sbjct: 535 IIHVRNRNNSKEINAVFLARISDEQKIEEANQKRNLQDALSAAKLANEAKSRFLSNMSHD 594 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLN+I+G +++++ P + + +E + I SG+HLL LIN+ILD+SRIE+G+ Sbjct: 595 IRTPLNSIIGMTDILKSH---PDDTKQVEEGLDKISMSGRHLLELINDILDMSRIESGKM 651 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSN 378 L ES ++ ++ E I +++ +A I I +V DE ++Q+ LN+LSN Sbjct: 652 SLQESGFNIRAMMSELIELVRPQALGSGITFISDIVSIEHDNVIGDELRIKQIYLNILSN 711 Query: 379 AVKFTAIGGRVHVTVGWTSG-----RGQYISI-KDNGPGIAEGEIPTVLTSFGQGSIAIK 432 AVK+T GG + +T+ R YI I DNG G++ + SF + Sbjct: 712 AVKYTWAGGSITITLREDGDVKNGRRHSYIFICSDNGIGMSREFQKHIFDSFERAEDNAI 771 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLG+ IA++++ GG + S+L +G +P Sbjct: 772 GNVTGTGLGMAIARNLVNLMGGTIDVDSRLGKGSVFTVTIPLE 814 >gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas ingrahamii 37] Length = 1574 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 10/246 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + N+AKS FLA+MSHE+RTP+NAI+G SE+ + M P ++Y+ Sbjct: 810 NRRLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTP----QLRDYL 865 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH SG LL +IN ILD S+IEAG+ +L SL+D++ EKNIE+ Sbjct: 866 SKIHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELI 925 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 IDP + + D Q+ NL++NA+KFT G++ + S+ Sbjct: 926 TSIDPDVPWHLVGDPLRTGQIFTNLINNAIKFTNK-GQITICASCLEKDDKQVRLLFSVA 984 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + I ++ F Q + G GLGL I + ++ G+ I S+ +G Sbjct: 985 DTGLGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGS 1044 Query: 467 EVIAIL 472 L Sbjct: 1045 VFSFEL 1050 >gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1183 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 6/258 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ K +L E++ + + +AEE AKS FLA+MSHE+RTP+N I+G S + Sbjct: 454 EIKSNKKNLEIEVDNRTKELEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLAL 513 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + N+ K YI I ++LLN++N+ILD S+IEAG+ L + +L + + Sbjct: 514 QTRL----NDKQKNYIEKIDICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENI 569 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + ++ EKN+E+ + + D + Q++ NLLSNA+KFT G++ V + Sbjct: 570 VNIIDFSVYEKNLELVVSYGTDVGKNFYGDNLRLAQILTNLLSNAIKFTND-GQIGVYIT 628 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 IKD G G+ E + + SF Q G GLGL I++ ++ G Sbjct: 629 KIDINRYQFEIKDTGIGLTEEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNG 688 Query: 455 QFLIRSKLREGVEVIAIL 472 + + S++ G I + Sbjct: 689 KIWVESQINVGSRFIFQI 706 >gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 843 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 10/264 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + + AE+ + AKS FLA+MSHE+RTP+N I+G ++++ + + ++ Sbjct: 443 KRNTELTQAKLAAEKADQAKSEFLANMSHEIRTPMNGIVGMADILANTDL----SAEQQQ 498 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S LL +IN+ILDLSR+EAG+ E+S L V + L+ R EK + Sbjct: 499 CVDTVRESSSALLKIINDILDLSRLEAGKMEISPIDFDLRKCVDGVVDTLRPRMVEKGLT 558 Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIK 406 Q L + D +RQ++LNLL NAVKFT G V + V +K Sbjct: 559 FTQTYTADLPELAHGDNGRLRQILLNLLGNAVKFTKE-GSVGLHVSRDKSDPYRMCFEVK 617 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+E + + F Q A G GLGL I+ + GGQ + S+ +G Sbjct: 618 DTGIGISEDQAEHIFERFSQADAATTRHFGGTGLGLTISNILAERMGGQITLASEPGKGA 677 Query: 467 EVI--AILPNTRVLNFIPEDNHES 488 L + P S Sbjct: 678 TFRLEIRLEPPKAAQNAPHAPTSS 701 >gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 901 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 151/298 (50%), Gaps = 21/298 (7%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 K + I E+ L LE AK ++E R AE+ N AKS FL+SMSHELRTPLN+I Sbjct: 474 IKEFLSIREDITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFLSSMSHELRTPLNSI 533 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GF++++EL + +E K+ + +I SG+HLL+LIN++L+L++IE+G LS Sbjct: 534 IGFAQLLELSDL----SEKQKKQLKNISTSGEHLLHLINDLLELAKIESGNISLSVERTE 589 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L IV EC+ M+ A++ +I+I + V AD ++QV++N L+NA+K+ Sbjct: 590 LKPIVEECLQMVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVLVNFLTNAIKYNREN 649 Query: 387 GRVHVTVGWTS-------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G + + ISI+D G GIAE + F + S +G G Sbjct: 650 GSITLFAEKKPAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFNRLGH-ETSTIEGTG 708 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF--------IPEDNHEST 489 +GL I + ++ GQ S G + +P ++ PE E+T Sbjct: 709 IGLAITKDLIEKMDGQVGFESTEGVGSKFWFDIPIASDIDSDSLEQCRLKPETEIENT 766 >gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] Length = 367 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 85 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 143 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 144 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 203 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 204 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 262 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 263 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 321 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 322 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 365 >gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 783 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 167/272 (61%), Gaps = 3/272 (1%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ E ++RAE N AKS FLA+MSHELRTPL Sbjct: 502 RLMATIHDLSIARKGERDRVRELSELARKYGQE-KERAEAANRAKSEFLANMSHELRTPL 560 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 561 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 620 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + M+ L+A EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 621 EIDLCPLINETVRMISLQADEKNIAVNTRIEDAM-QLYADRRAIKQVLINLLSNAVKFTS 679 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG++ V T G +++I+D G GI + I + F Q G GLGL I Sbjct: 680 YGGQITVRARKT-GSALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAI 738 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +S+ HGG IRS G V +P+ + Sbjct: 739 TRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770 >gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1186 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 10/288 (3%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + E I + + +++ ++AE N AKS FLA+MSHE+RTP+N I+G Sbjct: 768 EEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFLANMSHEIRTPINGIMGG 827 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +++E ++ K+ + S + L L+ +ILDLSRIEAG+ E+ ++ + Sbjct: 828 LQLLEATSLDH----EQKQLVEMGIASARRLTRLLTDILDLSRIEAGKMEIRKADFEVDR 883 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + A EKN+ I +DP L + D+ ++Q++LNL+ NA+KFT V Sbjct: 884 LCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQILLNLVGNALKFTHDD-TV 942 Query: 390 HVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + +G IS+ D+G GI++ ++ + F Q A +G GLGL I Sbjct: 943 ELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQADGAFTRNFEGAGLGLSIV 1002 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 ++ GG + S EG LP +N E+ Q K Sbjct: 1003 VRLVQMMGGNISVESTPGEGSTFYVSLPLEAGSGESAGENKENIQVKA 1050 >gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] Length = 1497 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 16/283 (5%) Query: 219 AEKDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E+ + EL +E + A+ N AKS FLA+MSHE+RTP+N+I+ +++E Sbjct: 1089 TERKRIEQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVGQLLE 1148 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + K+ + + + HLLN+IN+IL LS++E+ EL L ++ +E Sbjct: 1149 GTKLDT----QQKKLLQTLTNNSNHLLNIINDILSLSKLESRSLELEHRPFHLNEMFQEL 1204 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +AQ K I + I + V D+ ++QV NL+SNA+KFT+ G+V V Sbjct: 1205 SNTFTPQAQSKEIGLTFTIASDVPDVLMGDDFRLQQVFRNLISNAIKFTSS-GQVTVNAS 1263 Query: 395 WTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 Y +++D G GI + + F Q + G GLGL I + Sbjct: 1264 CDRDSVSEKSQVNLYFTVQDTGIGIDPAKQEDLFQPFVQADNSTTRQFGGTGLGLTICRR 1323 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 I+ G+ + S + EG +P + N + E+ Sbjct: 1324 IIQTMNGEIGLDSIVGEGSTFWLKIPFSLGDNTRVPETEETND 1366 >gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] Length = 1323 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E +V + E + A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 583 LTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKLDT--- 639 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +INEILD S+IEAG+ + +L D++ ++ L+AQ Sbjct: 640 -TQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNVTAVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK IE IDP + + D + QVI+NL NAVKFT G + +T + QY+ Sbjct: 699 EKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQ-GEIVITARVSQLNDQYV 757 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + +KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GGQ +R Sbjct: 758 TLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVR 817 Query: 460 SKLREGVEVIAI 471 S EG Sbjct: 818 STEGEGSIFEFS 829 >gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1238 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSLKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40] gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 942 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 16/363 (4%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 W ++ + + EY + L ++ A+ + L Sbjct: 137 LWVIIAIDKRSWAISEYQGTITILLAGSLCLFLTFYFARRFRDALATPLQKIETGLRDFL 196 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-----EKDDLIAELEVAKS 233 + + L+ L KS L E + + +E+ Sbjct: 197 KGNFEKSITIEPSSVFKDLASNINRLGALQKSANDELQLNIDQSTHELRETLETVEIQNI 256 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 D RK A + + KS FLA+ SHE+RTPLN ILGFSE++ + +Y+ Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTELNN----QQVDYLTT 312 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S + LL +IN+ILD SR+E G L + + ++ + + + A EKNI + Sbjct: 313 IEESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTI 372 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408 ID + + D ++QV+ NL+SNA+KFT + G + + V + D+ Sbjct: 373 IDHDVPENLLGDPLRLKQVLSNLVSNAIKFTDV-GYILLGVSKDQSSENQFTLKFRVTDS 431 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+++ + + F Q + G GLGL IA+ ++ G + S L +G Sbjct: 432 GIGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVESTLGKGATF 491 Query: 469 IAI 471 Sbjct: 492 WFT 494 >gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 894 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 19/360 (5%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G L + P +L +A + + + +L + P+ L Sbjct: 249 LDGQPMLTLAVTTPRQIAARGQESLWLTSLSLAGAGTLVLGLLLVMLNRIVLAPLS--LL 306 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 T+ + D A + + + + + D + Sbjct: 307 TRHATRLGTSDALDARLDLDRHDEIGVLAEAFDRMTAHLAQARQRLLDQLD-------AL 359 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E R AE N AKS FLA+MSHE+RTP+NA+LG +E++ + + + + IH Sbjct: 360 AEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLATDL----DAQQQRFAQTIH 415 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RSG LL++IN+ILD+S+IEAG+ L+ ++ E A K + + ++ Sbjct: 416 RSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTVRLP 475 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGP 410 L V D +RQ++ NL+ NA+KFT G + V+ T I ++D G Sbjct: 476 RDLPGLVHGDSTRLRQILFNLIGNALKFT-EHGEIRVSASLTIHADERMTLAIEVRDTGS 534 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + +F QG + G GLGL I+Q + G + S +G Sbjct: 535 GIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQGSCFTL 594 >gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1238 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1238 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 629 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 34/383 (8%) Query: 106 WRIWLLVGQIAIGLCWTL----LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 W+ L+ I L + + + + LL I A Sbjct: 24 WQTGLVWLHIISDATIALAYYSIPFLLIYFISKRKDVPFNGVFLLFGAFIIA-------- 75 Query: 162 AVFLSFFPVVVALSTQA---IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 ++ + ++ + ++ + TA + F + L + L Sbjct: 76 ---CGTGHLMDIWTLWYPDYWIAGGLKALTAIISIYTAFALFYLMPQALALPSPDQLEAI 132 Query: 219 AEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 I E + + + + A+ + AKS FLA+MSHELRTPLN ILG++++++ Sbjct: 133 NRILSTEIVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQILQRT 192 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 +E ++ + I++ G HLL LIN++LDLS+IEA + EL L + Sbjct: 193 ---ESLSEKGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTE 249 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + ++RA++K I +IDP+L + + DEK +RQV++NLLSNA+KFT G V Sbjct: 250 ICRIRAEQKVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQ-GSVTFKTQVI 308 Query: 397 SGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + D G GI + + F Q + K +G GLGL I+Q Sbjct: 309 NQESNANGKTNYKIRFEVVDTGTGITPEQAEKIFQPFEQV-GSQKRQSEGTGLGLAISQK 367 Query: 448 IMANHGGQFLIRSKLREGVEVIA 470 I+ GGQ ++S+ +G Sbjct: 368 IVLLMGGQIKVQSEFGKGSTFWF 390 >gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01] gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01] Length = 1000 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-Y 205 + +I+ + L + +SF + V ++ ++ L S+ Sbjct: 232 VGQAITIANQQRLMFIGVMSFITIAVISLALRLVRKVTNNLQLVLEFLRRDSYSEESPLR 291 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE+ + AKS FLA+MSH Sbjct: 292 ELIKGKDELSKFAQEVERLSYEREQAKVKLTQAKEDAEQAKDDAIKASKAKSSFLANMSH 351 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ ++ T K+Y+G I S Q LL+LIN+ILD S+IE+G Sbjct: 352 EIRTPLNGVIGISEVLSDTSLTA----TQKDYVGTIETSSQLLLSLINDILDFSKIESGM 407 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ +A+EK I++ I + + D+ +RQVI+N +S Sbjct: 408 LLISPHSTCVRESIYDIASIVSPKAKEKGIDLKVSISRNTPYRLMIDDHRLRQVIMNFMS 467 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + VT SG S++D+G GI E + + F Q + Sbjct: 468 NAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDSGIGIDEQQQKNIFEPFAQEDNSTTRQ 527 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG+ + S+ G + Sbjct: 528 FGGTGLGLAISTQLVELMGGKIQLESEKGHGSRFFFQI 565 >gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1238 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 1179 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 144/269 (53%), Gaps = 15/269 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +++ ++ ++ AE N AKS FLA+MSHE+RTPLN I+GF++++ + N Sbjct: 526 ITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL----N 581 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET ++Y+ + +SG LLN IN+ILD S+IEAG+ E++ S +L ++ E +++ + Q Sbjct: 582 ETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKYQVQ 641 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 K +E+ I L +WADE ++Q+++NLL NAVKFT G + + V + Sbjct: 642 SKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFT-ESGEIELKVEALTNPELPE 700 Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI + + +F Q + G GLGL I+ ++ Q + Sbjct: 701 IKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQLQV 760 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S + +G + +L P ++ E Sbjct: 761 ESVIGKGSVFYFEI----ILQSEPGESIE 785 >gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21] gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21] Length = 588 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 33/334 (9%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L Q + D+ + + K + E ++A Sbjct: 90 TAVQALRLGAQDYLFKPFDDLEMVIATVNKALERRRLVEERDKLVRTLAELAIENGRILA 149 Query: 227 ELEVAKSLSDE--TRKRAE--EENLAK---------------------SRFLASMSHELR 261 E S +E ++ AE + NL + S+FLA+MSHE+R Sbjct: 150 ECRRVNSSLEEKVAQRTAELSKANLQQKAIIAELREAKEAAEAANRAKSQFLANMSHEIR 209 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N +LG +E++ + +E K Y +H SG+ LL++IN+IL++S+IEAG+ E+ Sbjct: 210 TPMNGVLGMAELLLHSEL----DEKQKSYAKMLHHSGESLLDIINDILNISKIEAGKLEI 265 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L + R + + + + K + + +I+ + V D +RQV++N+++N + Sbjct: 266 ERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLRQVLINVVNNGL 325 Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G +V V++ + GQY +KD G GI I + F Q + G Sbjct: 326 KFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQVDGSTTRKYGG 385 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL IA+ ++ GG+ + S+ +G I Sbjct: 386 TGLGLAIAKQLVELMGGEIGVESEPGQGSTFTFI 419 >gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 939 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T S F + L S + + ++E L A +E S + + A+ N AK+ Sbjct: 411 AELDTLASSFNQMAQQLQASFTALETAKSE---LEARVEERTSELKDAKIAADTANRAKT 467 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHELRTPLN ILG++++++ +E K+ + I++ G HLL LIN+ILD Sbjct: 468 EFIANMSHELRTPLNGILGYAQILQ---PLKTTDEKVKDGLRIIYQCGSHLLTLINDILD 524 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S+IEA + EL + + + + +L+A++K I + + SL S+ +DEK +R Sbjct: 525 ISKIEAQKMELHPTDFHFPSFLSGVVEICRLKAEQKGIVLAYQPQNSLPDSIRSDEKRLR 584 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------------QYISIKDN 408 Q+++NLLSNA+KFT GRV V + I+D Sbjct: 585 QLLINLLSNAIKFTDE-GRVDFKVEVIGTQECPQAELREKSSITNHQLPITKIRFQIEDT 643 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++ + F Q S A QG GLGL I+Q I+ G ++S+ G Sbjct: 644 GIGINSEQLEKIFLPFEQVSEA-SRNHQGSGLGLAISQKIVELMGSTIKVKSQPGVGSTF 702 Query: 469 IAILPNTRVLNFIP---EDNHES 488 + L ++ +P E NH++ Sbjct: 703 LVELDLIQLPESVPPSVEPNHKN 725 >gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1367 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 11/281 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + + I + ++ + ++ AE+ K RFLA+MSHE+RTP+N I Sbjct: 812 IRLEDGRIEEVSAISHDITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGI 871 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +++ + +EY+ I +S + LLN++N+ILDLS++EAG+ L + Sbjct: 872 IGMIDLMMDTPLEN----KQQEYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMD 927 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 + +V + + +A+ KN + ++DP + + ADE + Q+I NL+SNA+KFT Sbjct: 928 IRFMVEKVYTLFLQQAKAKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFT-ED 986 Query: 387 GRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G+V + S + + D+G GI+ + + ++F Q + + G GLGL Sbjct: 987 GQVAIKFTLASKGELSVHLLVEVADSGLGISPEDQNRLFSTFTQLDNSSSKSYSGTGLGL 1046 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 I++ + G + S++ G + + PE Sbjct: 1047 AISKELCRLMNGDIGVISEIGHGSTFWFTF-EAQPTDEKPE 1086 >gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] Length = 412 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL +I G++E + + + N E K ++ I + L Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL ++E + L ++V ++Q A+E +++ + + V + Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECED--VVVKGN 297 Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + Q++LNL+ NAVK+T G V V + + + +KD GPGI + + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGIPKESQSRIF 357 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ HGG+ + S++ +G + LP Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411 >gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 784 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 167/272 (61%), Gaps = 3/272 (1%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ E ++RAE N AKS FLA+MSHELRTPL Sbjct: 502 RLMATIHDLSIARKGERDRVRELSELARKYGQE-KERAEAANRAKSEFLANMSHELRTPL 560 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 561 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 620 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + M+ L+A EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 621 QIDLCPLINETVRMISLQADEKNIAVNTRIEEAM-QLYADRRAIKQVLINLLSNAVKFTS 679 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG++ V T G +++I+D G GI + I + F Q G GLGL I Sbjct: 680 YGGQITVRARKT-GSALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAI 738 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +S+ HGG IRS G V +P+ + Sbjct: 739 TRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770 >gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1817 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 14/260 (5%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++ EL + ++ ++ AE N AKS FLA MSHE+RTP+NA++G Sbjct: 1102 ALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1161 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ + ++++ + SG LL++IN+ILD S+IE+G+ EL E + Sbjct: 1162 TGLLLDTELTS----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRT 1217 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 V + I +L +A +K+IE+ I P + + D +RQ++ NLL+NA+KFT G V Sbjct: 1218 CVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPE-GEV 1276 Query: 390 HVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V+V +IKD G GIA + + F Q ++ G GLG Sbjct: 1277 VVSVRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLG 1336 Query: 442 LPIAQSIMANHGGQFLIRSK 461 L I++ + GG + S+ Sbjct: 1337 LVISKRLGEMMGGYLWVESR 1356 >gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] Length = 954 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 145/311 (46%), Gaps = 22/311 (7%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 I + +L ++ F + KS +KI E +A Sbjct: 517 PLIVIFILLVASILFMIFWQEARRKSYLKIAE--------------KNEQLLEAVDQANR 562 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N AKS FLA MSHE+RTP+NAI+G +E+ + + + ++Y+ I S + LLN+ Sbjct: 563 ANQAKSDFLARMSHEIRTPMNAIVGLTEIAKH---YEDDPKKIEDYLDKIDVSSKVLLNI 619 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWA 363 IN+ILD+S IE + ++++ L +I+ + + + ++K I + + + + + Sbjct: 620 INDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGIVFEVQDEEVTHTYLIG 679 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQYIS--IKDNGPGIAEGEIPT 419 D + Q++LNL+SNA KFT+ GG++ + V + Y + ++D G G++E Sbjct: 680 DGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNFLVEDTGEGMSEEMQTR 739 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q S G GLGL IA++ + G ++SK EG + +P Sbjct: 740 LFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKGEGTTFVVSIPFEFEQA 799 Query: 480 FIPEDNHESTQ 490 PE + Sbjct: 800 AEPEITERPVE 810 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 3/271 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 T L + + + E++ + + E + KS FLA+MSHELRTP Sbjct: 394 TKELERQKTDMQQKNFALEQTQVEMQKTQVALETKANELELASRYKSEFLANMSHELRTP 453 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN++L ++++ G L + EY IH +G LL LIN+ILDLS++EAG+ E+ Sbjct: 454 LNSLLILAQLLANNKPGNLTD-KQIEYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHA 512 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKF 382 + ISL +++ + A+++ + I + SL++++ D + ++Q++ NLLSNA KF Sbjct: 513 NDISLTNLLETIEQKFRPIAEQQELNFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKF 572 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G + + V + S+ D G GI + + + +F Q + + G GLGL Sbjct: 573 TQQ-GNIKLIVQKSEADFISFSVSDTGIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGL 631 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I++ GG+ + S+ +G LP Sbjct: 632 SISRQFARLLGGEITLHSEEGKGSTFTFSLP 662 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 4/280 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 Y+ + ++ I E + + E AE N AK +FLA+MSH Sbjct: 375 LIVYMQKVPVRDEAGRVTGIIGLAVDITEHKQLEVKLTEALAAAEAANQAKDQFLAAMSH 434 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAI+GFSEV+ + GPL N+ + Y+ DI S +HLL +IN++LDL+++ AG+ Sbjct: 435 ELRTPLNAIMGFSEVLLDQHFGPL-NDKQQVYVNDILDSARHLLEIINDVLDLAKLNAGK 493 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLS 377 + + ++R+ + +++ RA KNI + +D V D + +Q++ NLLS Sbjct: 494 TNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRRFKQIMYNLLS 553 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT GG + V +G IS++D G GIA + F Q S + + G Sbjct: 554 NAVKFTPDGGAIKVEC-RDAGEWLEISVEDTGIGIAATHAEHIFEPFYQVSGNLTAKTPG 612 Query: 438 VGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAILPNTR 476 GLGL I + ++ HGG+ + S+ +G +LP + Sbjct: 613 TGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLPVRQ 652 >gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] Length = 1055 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 17/327 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA---------LSFFTYITYHLFK 209 + ++ V + L ++ ++ + T L+ T L K Sbjct: 300 IALMSLVTLLIVSLTLRLVRKVTGNLNLVLEFLSRDTYEEDNNENSPLTELTKGKDELSK 359 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ E++ +L AK +++ + A E + AKS FLA+MSHE+RTPLN ++G Sbjct: 360 FAKEVKKLSYEREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIG 419 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G +S + + Sbjct: 420 ISEVLSDTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVR 475 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387 + + + ++ +A+EK I++ I + V D+ +RQ+I+N +SNAVKFT G Sbjct: 476 ESIYDIASIISPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCV 535 Query: 388 RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + V S+KD+G GI E + + F Q + G GLGL I+ Sbjct: 536 ELSVITREIKNGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAIS 595 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG+ + S+ +G L Sbjct: 596 TQLVELMGGEIQLESEKGKGSRFFFEL 622 >gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1238 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 698 ITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 873 TLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] Length = 931 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 161/340 (47%), Gaps = 23/340 (6%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212 + P+ +S + LDI + G L L + ++ + + Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I ++ + + +LE+ D +KRA+E KS FLA+MSHELRTPLN ++GF+ Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + N + K+Y+ I S +LL +IN+ILD S++EAG+ L D + Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390 E + +L A EK +E+ KID + + + D ++QV+ NL+ NAVKFT G V Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429 Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + + ++D G GI+E + + +F Q +I G GLGL I Q + Sbjct: 430 VELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489 Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481 ++ GG+ + S+L +G LP ++ ++ Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLPVSQPIDTT 529 >gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 469 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLP---YAVFLSFFPVVVALSTQAIMSMH 183 G +T LT+ + + + + L V F ++++ ++S Sbjct: 127 YFGGAFTSPVLTVGVPLVIKGHIEGAIFMHASLEEMNRTVLNIFLLMLLSGGMAFVVSFI 186 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 ++ + + ++ L + + K N E+D++ + R+ A+ Sbjct: 187 LISYT-SNRISEPLKKMSLAAREIAKGNFSARVDHFEEDEIGDLARSFNVM---ARELAQ 242 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E++ K F+A++SHELR+P+ +I G+ + I G + E +Y+ + + + Sbjct: 243 LEDMRK-EFVANVSHELRSPITSIQGYIDGILD---GTIPKEKTYDYLKVVQEETRRMSR 298 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++L+++++E+G + L+ + + +++R CII + R EK++ + + V+A Sbjct: 299 LINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEEDRRFVFA 358 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA+KF+ G +H+ G +I++KDNG GI+ ++ + Sbjct: 359 DRDKIEQVLTNLIDNAIKFSKPKGIIHL-FTEVKGDKVFITVKDNGIGISPEDLEHIWER 417 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F + + + G GLGL I + I+ H + S+L++G LP +V Sbjct: 418 FYKADKS--RGKDGAGLGLYIVKKIIEAHKEEIWAESELKKGTSFTFTLPIKKV 469 >gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222] gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222] Length = 808 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 21/359 (5%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + E+ + +++ ++ + +L F + +++L I+ V+ Sbjct: 116 MVHQMGGSEFQLATLTVQSDLSMILNDFEDRVLLLLAFEAVKIFLLSLVCLTIVYRLVVK 175 Query: 187 ISLAGMLATAL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + F T + + L + I + ++ + Sbjct: 176 RLMTMSSQINHQQVEDNKPRFLTPTNSTYSDEISTLESSY--NQSIERIRQQYQELEKAK 233 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE N KS FLA+MSHE+RTP+N I+G S ++ M + KEY+ ++ S Sbjct: 234 DTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSL 289 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL+LIN+ILD S+IEAGR EL + + ++ I + +++A++K ++ IDP + Sbjct: 290 TLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIP 349 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGI 412 V D +RQV+ NL+ NA+KFT G V +++ + D+G GI Sbjct: 350 TMVIGDGTQLRQVLNNLVGNAIKFT-EHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGI 408 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 AE + +V F Q + G GLGL I I+ G + + S + +G Sbjct: 409 AEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSVVGKGSTFYFT 467 >gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 639 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 15/340 (4%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213 F++ F ++ L + + L + + + + F V Sbjct: 151 FLVIAEAIKIFLLIIGVLWVTFRLMVKPLQLLSGAVSDFSGGHVPSKVQLPKRWFFDEVG 210 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L + + + + + +E R +AE N KS FLA+MSHE+RTP+N I+G + + Sbjct: 211 LLELKY--NRSVERVSEHQLEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + +E K+++ I+ S L+ +I++ILD S+IEAG+ EL + +L+D++ Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLH 324 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + ++AQ+K +++ ID L V D ++QV+ NLLSNAVKFT G V + Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDAQLPSEVEGDVGRLKQVLSNLLSNAVKFTER-GHVKLM 383 Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + + + D+G GIA+ V F Q + G GLGL I S+ Sbjct: 384 VSQVNREDDIASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSL 443 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + GG+ + S+ G +P V + + + Sbjct: 444 VEVMGGEIRLTSEPGLGSCFEFTIPLNIVSDTPIAPSTPN 483 >gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 711 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 4/244 (1%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + +K+AEE N++KS FLA+MSHELRTP+N I+G++E++E E N + I Sbjct: 190 ELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTEMLEEEI-KECPNPNLLQDIKS 248 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 IH + +HLL L++ ILD+S+IEAG+ L L +++ I +Q ++K + Sbjct: 249 IHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEKKANALQIS 308 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYISIKDNGPG 411 D L + D +RQ+++NLLSNA KFT G + + V T G I + D G G Sbjct: 309 FDEDLGEAYTDLTKVRQILINLLSNASKFTDQ-GIITLEVRRQRTQGDWITIRVSDEGIG 367 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + + F Q +I G GLGL I + GG I S+ +G Sbjct: 368 MTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFGKGSHFKVR 427 Query: 472 LPNT 475 LP Sbjct: 428 LPAQ 431 >gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1] gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1] Length = 576 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHELRTP+ +I GFSE + M + ET + ++ I R Sbjct: 341 ELKKLEQMRKDFVANVSHELRTPITSIKGFSETLLDGAM--NDKETLEMFLNIILRESDR 398 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS++E ++L+ + +++ E I +L+ + ++K+IE+ D ++ + Sbjct: 399 LQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA 458 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 D ++QV +NL+ NA+ +T GG V V++ S I ++DNG GI E E P + Sbjct: 459 -EVDSFRIKQVFINLIGNAITYTPAGGEVSVSLKQ-SDSVIVIEVRDNGIGIEESEFPRI 516 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ HGG + SK+ EG L Sbjct: 517 FERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTL 568 >gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 680 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 6/285 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 Y + + + + I + + ++ AE AKS FL++MSH Sbjct: 256 RIVYARGGVERDDEGQPEFIFGILEDITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSH 315 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPL ILG++ +++ P + + YIG I+++G+ LL+LI ++LD S++EAG+ Sbjct: 316 EIRTPLTTILGYANLLKGVGDLPKDA---RHYIGRINKAGEALLSLITDVLDFSKLEAGQ 372 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L L + + + +NI I D + + D+ +RQV+ NL+ Sbjct: 373 VTLDPQPTDLRQLAGDVVDQFMAMTDTRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIG 432 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA KFT G V VT+ S + +KD+GPG+ + + T F Q +I G Sbjct: 433 NACKFTHD-GYVAVTLA-VSDGQLRVKVKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGG 490 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GLGL I I+ G+ + S+ +G +P P Sbjct: 491 SGLGLSICHEIVKLMQGRIGVESEAGQGSTFWFEIPVVPTEAPAP 535 >gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] Length = 1039 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----EEE 709 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EY+ I + LL LI++ILDLS+IEAG EL+ S I L +++RE LR + Sbjct: 710 QEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVK 769 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 +++ V+ ++ + Q+++NL++NA+KFT G + G+ Y Sbjct: 770 TDAVKLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTEKGS---IRFGYEMRENELYF 826 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + + F + S QG GLGL I Q+++ GG+ + S+ Sbjct: 827 YVADTGCGIPKDKQQNIFGRFVKL----NSFAQGTGLGLSICQTLIERMGGRIGVESEEG 882 Query: 464 EGVEVIAILPNTRVLNF 480 +G LP + Sbjct: 883 KGSTFWFTLPYKPAVKE 899 >gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 1313 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 98/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + A+ E ++ AE N AKS FLASMSHELRTPLN ILG++++ Sbjct: 814 ISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIF---NHDKSLT 870 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +E I I RSG+HLL LIN+ILDLS+IE+G+ EL + + +++ + ++RA+ Sbjct: 871 EKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAE 930 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------G 394 +KN+E + L + V+ADEK +RQV+LNLLSNAVKFT G+V V Sbjct: 931 QKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQE-GQVSFKVIYQSVPAPST 989 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + ++D G GIA ++ + F Q +G GLGLPI++ ++ G Sbjct: 990 EENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGD-QSEQVEGTGLGLPISKKLVEMMAG 1048 Query: 455 QFLIRSKLREGVEVIAILPN 474 Q ++S L G +P Sbjct: 1049 QLQMQSMLGVGSIFWFEIPL 1068 >gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25] Length = 1059 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 17/327 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA---------LSFFTYITYHLFK 209 + ++ V + L ++ ++ + T L+ T L K Sbjct: 304 IALMSLVTLLIVSLTLRLVRKVTGNLNLVLEFLSRDTYEEDNNENSPLTELTKGKDELSK 363 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ E++ +L AK +++ + A E + AKS FLA+MSHE+RTPLN ++G Sbjct: 364 FAKEVKKLSYEREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIG 423 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G +S + + Sbjct: 424 ISEVLSDTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVR 479 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387 + + + ++ +A+EK I++ I + V D+ +RQ+I+N +SNAVKFT G Sbjct: 480 ESIYDIASIISPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCV 539 Query: 388 RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + V S+KD+G GI E + + F Q + G GLGL I+ Sbjct: 540 ELSVITREIKNGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAIS 599 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG+ + S+ +G L Sbjct: 600 TQLVELMGGEIQLESEKGKGSRFFFEL 626 >gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 891 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 12/256 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 ++ + ++ AE + AKS FL+ MSHELRTP+N I+G + ++ + Sbjct: 617 MVFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---- 672 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E + YI I S L+ ++NEILDLS+IEAG+ L + L D+V + +A Sbjct: 673 DEEQRSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQA 732 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 EK I++ +D + + D +RQ+++NL+SNA+KFT G V++ V + Sbjct: 733 MEKGIQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTER-GHVNIFVERKAYSRRK 791 Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+ D G GI + F Q A+ G GLGL I ++++ GG Sbjct: 792 KKCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSI 851 Query: 457 LIRSKLREGVEVIAIL 472 + S G L Sbjct: 852 GVDSDEARGATFRFQL 867 >gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 953 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 141/259 (54%), Gaps = 11/259 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E ++ + +T + K FLA+MSHELRTPLN ILG SE ++ +G LN+ Sbjct: 546 ISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNS 605 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I I +SG+HLL LI++ILD+S+IEAG+ EL + + + ++ + ++ A Sbjct: 606 -NQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAF 664 Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398 K I I I +L + D + +RQV++NLLSNA+KFT G++++ VG + Sbjct: 665 TKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAA 724 Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + Y S+ DNG GIA ++ + F Q ++ G GLGL + + I+ HGG Sbjct: 725 ISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 784 Query: 455 QFLIRSKLREGVEVIAILP 473 + S+L +G LP Sbjct: 785 CVEVSSQLGKGSCFTVYLP 803 >gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1118 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 161/414 (38%), Gaps = 36/414 (8%) Query: 86 NLSLGKKVMNSDIKIGEVYVWR---IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 L + + + L + W + + Sbjct: 223 MLLNEDGYWLASPYPERNWAFMFKGREDLRFSLEHPRAWARIQAM---DQGQFTTPTGIY 279 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 T I+++ +A + + A + +A + +S Sbjct: 280 TTSTISVAPTAGATVKVANAQSWKVVCMTSTAVIRAHVDPVRGHYLAILGGIFLMSALIG 339 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 +T IA E + R+ AEE N AKS FLA MSHE+RT Sbjct: 340 LTRA----------------RFIAARERNGRELETARRAAEEANRAKSDFLARMSHEIRT 383 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G + + + +Y+ + S LL +IN+ILD S+IEAGR + Sbjct: 384 PMNAIIGLTHLALKTQLTA----KQADYLAKVSLSANSLLGIINDILDFSKIEAGRLTVD 439 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 E+ L D++ I ML L A++K IE + ++ V D + QV+LNL +NA+K Sbjct: 440 EADFLLDDVLNNIINMLGLSAEQKGIEFLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIK 499 Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V + G S++D G GI + + F Q +I G Sbjct: 500 FTEK-GEVILQADLLEQDGTTAVIRFSVRDTGIGIGPEHLDQLFQPFSQADGSITRQFGG 558 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 GLGL I++ ++ GG + S+ +G E LP P+ +++ +Y Sbjct: 559 TGLGLSISKRLVKMMGGDMAVVSEPGKGSEFSFTLPLK----LQPDHANDTFEY 608 >gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1162 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRF 252 T + L S ++ + E + E+ V + R + E+ + KS F Sbjct: 443 LTRQSEILQASEEELRVQEEELRQINDEMTVQNKALEIARQQLSLKAEELEQSSRYKSEF 502 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN++L + ++E L+++ +Y G IH+SG LL LIN+ILDLS Sbjct: 503 LANMSHELRTPLNSVLILARLLEENKDRNLSSKQV-DYAGIIHKSGSDLLKLINDILDLS 561 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 +IEAG+ E+ +S+ +V + + ++ A EK+I +I + +V D + + QV Sbjct: 562 KIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFSTEIAAGVPATVQTDRQRLEQV 621 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 I NLLSNA KFT G + + + + YI++ DNG GI + + +F Q + Sbjct: 622 IKNLLSNAFKFTPKNGNIQLRLTAAADG-VYIAVSDNGTGIPVEKQQLIFEAFRQADGST 680 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +M GG+ + SK +G +L Sbjct: 681 SRKYGGTGLGLSISKELMKRLGGEIRLESKEGQGSTFTVVL 721 >gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1195 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 14/260 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + ++ ++ AE N AKS FLA+MSHE+RTP+NAILGF ++++ + N+ Sbjct: 691 ITERKKYQEALEKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKKV----ND 746 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + Y+ I +G+ LL+LIN+ILDLS+IEAG+ ++ +I L +++ E M A+ Sbjct: 747 ERSRRYLESITSAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFAETAK 806 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG-- 400 +K +E+ ID ++ V DE ++Q++ NL+ NA+KFT G ++ + Sbjct: 807 QKQLELLIDIDDNVPDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKSDNHQ 866 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ISI+D G GIAE + + F Q G GLGL I + + G Sbjct: 867 KFSHCSLKISIEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTEILEG 926 Query: 455 QFLIRSKLREGVEVIAILPN 474 + S+L +G I P Sbjct: 927 TIDLDSQLGKGSIFILSFPK 946 Score = 37.6 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 10/174 (5%) Query: 57 LLVANIGTWFTQNPIFPMW--SLITLAVYAANLSLGKKVM--NSDIKIGEVYVWRIWLLV 112 L +I W LA G + ++ + +W Sbjct: 33 FLFGSIAVLIVVYCYGIFWGTLAGMLAGSITFYLWGHPYAMIIATLEAAFIALWSRRQRN 92 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA-VFLSFFPVV 171 + G+ W LL + G + L + S TLLIAL F A + +S+ P+ Sbjct: 93 FVLLDGIYWVLLGMPLVGLFYGLILPVSASGTLLIALKQGLNGIFNALIANLLISYIPLD 152 Query: 172 VALSTQ-----AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 ++ Q ++ + + LA +L +L + + E Sbjct: 153 HLINPQKSKQPLSLTQTLFNFLLAFILFPSLFLTVLHGKESLSFIEAEIQSELE 206 >gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1820 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 14/260 (5%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++ EL + ++ ++ AE N AKS FLA MSHE+RTP+NA++G Sbjct: 1105 ALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1164 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ + ++++ + SG LL++IN+ILD S+IE+G+ EL E + Sbjct: 1165 TGLLLDTELTS----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRT 1220 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 V + I +L +A +K+IE+ I P + + D +RQ++ NLL+NA+KFT G V Sbjct: 1221 CVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPE-GEV 1279 Query: 390 HVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V+V +IKD G GIA + + F Q ++ G GLG Sbjct: 1280 VVSVRSQPSPNQKTKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLG 1339 Query: 442 LPIAQSIMANHGGQFLIRSK 461 L I++ + GG + S+ Sbjct: 1340 LVISKRLGEMMGGYLWVESR 1359 >gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 753 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 8/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + +E R AEE AKS FLA+MSHE+RTP+N ++G ++++E + Sbjct: 350 ERDMTAAKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDL-- 407 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + Y I S + LL LIN+ILDLS+++AG+ L+ L + E I +L Sbjct: 408 --DGDQRLYTNTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLT 465 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 +A+ K + + + D L + D+ +RQ++ NL+ NA+KFT G +V V + Sbjct: 466 QAEAKGLTLEVERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKVSVEMEPAQDG 525 Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G + +I D G GI + + + F Q AI G GLGL I++ + GG+ Sbjct: 526 GVLLNCAIIDTGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRIT 585 Query: 458 IRSKLREGVEVIAILPNT 475 + S++ G +LP Sbjct: 586 VTSEIGSGSCFTLVLPFA 603 >gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 636 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 13/356 (3%) Query: 140 YKSATLLIALSISALSNFMLPYAV--FLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + A LL ++ + + + V ++ P+ S ++ L Sbjct: 255 WTRAVLLAVGILTVFMSMVALWMVVKYVVIKPLSHLRSVSEAVTRGDLQQR---ADIHTN 311 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F + K + Q+E + +L+ + R E N K FLA+MS Sbjct: 312 DEFEDLAASFNKMLRHLTDAQSELKEANYDLDAKVDQLAQLNMRLHEMNRLKGEFLANMS 371 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN+I+GFSEV+ + K Y +I +SG+ LL +IN+ILDL+++EAG Sbjct: 372 HELRTPLNSIIGFSEVLA---GIDSLTDKQKRYAQNIQKSGRSLLEMINDILDLAKLEAG 428 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + ++ S + I+ M++ ++KNI++ I+ L +++ D+ ++Q++ NLLS Sbjct: 429 KMDVRLSEFRIDSILSAHCDMVRSLTEDKNIDLVLDIENDLPALYQDQAKLQQILTNLLS 488 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS-----IAIK 432 NA+KFT GGR+ V S + + D G GIA+ + + F QG+ + Sbjct: 489 NAIKFTPEGGRITVGAKGDSRGFIEMYVSDTGVGIADADKEIIFEKFRQGTAVLGRDNLT 548 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL I + + GG+ + S+L G +P R +S Sbjct: 549 REYSGTGLGLSIVKELCKLLGGEVSVESELGRGSTFRVTIPWMRADQPQAAAKLQS 604 >gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681] gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681] Length = 609 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 2/233 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE + F+A++SHELRTPL I ++E ++ M ++G I + ++ Sbjct: 372 EEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAE--RFVGVIRNETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ L +++++ E + ++K+I ++ + V Sbjct: 430 RLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVV 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ NL+SNA+K+T GG + + S IS++D G GI + ++ + Sbjct: 490 IDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ I+ HGGQ + S+ +G LP + Sbjct: 550 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPMS 602 >gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 761 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 154/308 (50%), Gaps = 8/308 (2%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 H++ ++ +A S + + + + ++ AE + + ++ R+ A Sbjct: 174 HMIHKRMSDAIAGLRSPLRPLPWFASREFRALDFSVGVLEETFAERDEREFALEQAREAA 233 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHE+RTP+N ++G +E+++ + ++ + Y I +SG LL Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRL----DDDQRMYAETIGKSGSALL 289 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN+IL+ S+IEAG+ ELS + +L V + + +L +A EK +E+ + DP+L ++ Sbjct: 290 TIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELF 349 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 D +RQVI N+ NAVKFT G V T G + + D G GIA+ I Sbjct: 350 EGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIG 409 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q A +G GLGL I+ ++ GG ++S +G +P Sbjct: 410 RIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIPLRASE 469 Query: 479 NFIPEDNH 486 +P + Sbjct: 470 KTLPAQDS 477 >gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 914 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 148/324 (45%), Gaps = 15/324 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 +A + + + + + ++ + AE + LE + Sbjct: 314 RAATTPAIALAGGLAVTLILFIYLVSLANQRARTEQVVAQRTAELRGVNMRLEERTIQLE 373 Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E + RAEE AKS+FLA+MSHE+RTP+N ++G +E++ + N + +E Sbjct: 374 ESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL----NASQRE 429 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I +S LL+LIN+ILD S+IEAGR EL A SL D + + + RA EK IE Sbjct: 430 YLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIE 489 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR--GQYISI 405 + + + ++ D +RQV++NL+ NA++FT G V V V + ++ Sbjct: 490 LACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLRFAV 549 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D GPGIA + + +F Q + G GLGL IA ++ GG+ + S + G Sbjct: 550 SDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRG 609 Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489 + P E Sbjct: 610 SVFHFTIAFALAQGETPHPPAEQP 633 >gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 1054 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 104/378 (27%), Positives = 163/378 (43%), Gaps = 27/378 (7%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 WT T IYK AT I + + M+ YA+ FF +++ + Sbjct: 266 WTAATDKRLNKLALASSNIYKLATERINTRLETEKSRMIQYAIAAVFFLILLMILAVIFY 325 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 ++ L L + V A L + Sbjct: 326 NVTKESRLLDETLKNIQFELDPQKKRELQRIVASRDLAAIYKFLGETI------------ 373 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E N AK FLA+MSHE+RTPLN I+GF+++++ + P +E+I I S + Sbjct: 374 --VEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSP----DQQEFISVIENSSDN 427 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL+++N+ILDLS+I A + EL + A + I+ + + +A EKNI+ +DPS+ Sbjct: 428 LLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK 487 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEG 415 + D + QVI+NL+SNA+KFT G V V + T Y +++D G GI E Sbjct: 488 TLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEE 547 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + +F Q G GLGL I+ ++ GG+ I S+ +G L Sbjct: 548 QKAKIFGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTL--- 604 Query: 476 RVLNFIPEDNHESTQYKC 493 L P+ E + Sbjct: 605 -TLPKGPDQAKEIPDFHG 621 >gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] Length = 918 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISTVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L +L + + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] Length = 412 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL +I G++E + + + N E K ++ I + L Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL ++E + L ++V ++Q A+E +++ + + V + Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECED--VVVKGN 297 Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + Q++LNL+ NAVK+T G V V + + + ++D GPGI + + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKESQSRIF 357 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ HGG+ + S++ +G + LP Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411 >gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1474 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 142/293 (48%), Gaps = 14/293 (4%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + E+ + +L ++ R+ AE N AKS FLA+MSHELRTPLN ILG+ Sbjct: 961 ALAQSQLLEEQTRISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGILGY 1020 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +V++ E P ++ + I + G+HLL L+N+ILDLS+IEA + +L S Sbjct: 1021 VQVLKRE---PHPTAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQFPH 1077 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + I M+++RA EK I + L V DEK +RQV++NLL NA+KFT G + Sbjct: 1078 FLEGIIEMVRIRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQ-GSI 1136 Query: 390 HVTVGWT--------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 VG+T + I+D G GIA ++ + F Q +G GLG Sbjct: 1137 TFKVGYTSAQAPATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQIGD-RNRQVEGTGLG 1195 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 L I+Q ++ GG+ + S + +G L V D E + Sbjct: 1196 LAISQRLVQLLGGELHVESNVGQGSTFYVDLELPAVSPDQAIDVVEDRIISGF 1248 >gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48] gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48] Length = 918 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 107/467 (22%), Positives = 181/467 (38%), Gaps = 15/467 (3%) Query: 25 LEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYA 84 + P++++ + L A L+ Sbjct: 63 RQAPAQLERIAAQALEQTDVRAVAFLAADRTRLAHAGPSMLNQPPSGGTGTQLLQRTGND 122 Query: 85 ANLSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 A L L +I + TLL + + + S Sbjct: 123 ATRYLMPVFGHHRDLATDAVPAEAERLLGWVEIELSHDGTLLRGYRNLFTSLLLIIVCLS 182 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 T L+A+ +S N + L + LA + Sbjct: 183 LTALLAVRMSRTINGPINRIKHTVNQLKDGHLEERLPAMGSHELDELAAGINRMAETLHS 242 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 L S + + + I E+ D RK A E + KS FLA+MSHE+RT Sbjct: 243 AHEELQHSIDQATEDVRQNLETI---EIQNIELDMARKEALEASRIKSEFLANMSHEIRT 299 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILGF+ +++ + P +Y+G I +S +LL +INEILD S+IEAG+ L Sbjct: 300 PLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLD 355 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 +L D++++ + +L A K +E+ + S+ D ++Q++ NL+SNA+K Sbjct: 356 SIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDTPLSLVGDPLRLKQILTNLVSNAIK 415 Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + V + IS++D G G++ ++ T+ +F Q ++ G Sbjct: 416 FTRE-GTIVVRAMLEDDQDDTVQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLSRQPGG 474 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GLGL I++ ++ GG+ + S EG + L R + E Sbjct: 475 TGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLPRAHDDAEEQ 521 >gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 911 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 9/269 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L +++ + + ++ E+ AKS F+A MSHE+RTP+NA++G S + + Sbjct: 160 NETLDRKVKERTAALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQL- 218 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N +Y+ I SG LL L+N++LD S+IEAG +L ++VR I M Sbjct: 219 ---NAEQNDYLTKIKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNS 275 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398 A EKN+E+ I + + D ++Q+++NL++NAVKFT+ G + ++ Sbjct: 276 FSAYEKNLELITDIAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEE 335 Query: 399 RGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D G GI E + T+ +SF Q +I G GLGL I + GG Sbjct: 336 GHVSLKCEVSDTGIGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSI 395 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDN 485 ++S+L G LP ++ + P+ Sbjct: 396 TVKSELGSGTTFTVHLPL-KISSHQPKAQ 423 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 143/322 (44%), Gaps = 23/322 (7%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD----------- 223 +I VL + L G+ A + + + ++ + +AE D Sbjct: 186 LLVSIALAAVLLLVLLGITARITTPLRNLAETMRQAQLGEKQVRAEMDGPKDIMDMESAF 245 Query: 224 --LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ LE + R A E K F A++SHELRTPLN +LG E++ + P Sbjct: 246 NTMMTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTP 305 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +EY+ SG+ LL LI ILD SRIE+GR++L + L +I+ + I +L Sbjct: 306 ----KQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAG 361 Query: 342 RAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +AQ K++++ + + S+ D +RQ+++NL+ NAVKFT G V V V Sbjct: 362 QAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQ-GEVSVEVQLLEKTA 420 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +KD G GI + +F Q + G GLGL I + ++ GG Sbjct: 421 KKLVLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDI 480 Query: 457 LIRSKLREGVEVIAILPNTRVL 478 + SK G +P + Sbjct: 481 GVESKFGGGSRFWFTVPLEEAV 502 >gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 549 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 141/259 (54%), Gaps = 11/259 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E ++ + +T + K FLA+MSHELRTPLN ILG SE ++ +G LN+ Sbjct: 142 ISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNS 201 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I I +SG+HLL LI++ILD+S+IEAG+ EL + + + ++ + ++ A Sbjct: 202 -NQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAF 260 Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398 K I I I +L + D + +RQV++NLLSNA+KFT G++++ VG + Sbjct: 261 TKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAA 320 Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + Y S+ DNG GIA ++ + F Q ++ G GLGL + + I+ HGG Sbjct: 321 ISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 380 Query: 455 QFLIRSKLREGVEVIAILP 473 + S+L +G LP Sbjct: 381 CVEVSSQLGKGSCFTVYLP 399 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 11/285 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + L + + +RAE N AKS FLA+MSHE+RTP+NAILG + +++ Sbjct: 679 ELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLK 738 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +T + T ++ + I + QHLL +IN+ILDLS+I+AG+ L +S SL ++ Sbjct: 739 RDT----PDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNV 794 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++ +A+ K + I I + + V D +RQ +LN +NA+KFT G V + V Sbjct: 795 SALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANAIKFTEQ-GSVTLRVRV 853 Query: 396 T----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G ++D G GI+ + + +F Q ++ G GLGL I + Sbjct: 854 DHPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKYGGTGLGLAITSRLATL 913 Query: 452 HGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHESTQYKCY 494 GG+ + S L +G L + P ++ Q + Sbjct: 914 MGGEVGVTSTLGKGSCFWFTARLAVGQGEPQQPAALEQTVQQALF 958 >gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1767 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 14/301 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 + V ++T ++ ++ ++ E K LSDE Sbjct: 968 LAEGKVDHYRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTE-LKLLSDEL 1026 Query: 238 --TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKIE 1082 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ + LL++IN+ILD S+IEAG+ ++ L ++ + M +A K +E+ + Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410 P++ ++ D + QV++NL++NA+KFT G V +++ + S++D+G Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ + + SF Q + G GLGL I + ++ GG + S+ G Sbjct: 1202 GLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 471 I 471 Sbjct: 1262 T 1262 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 9/258 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + + +AE N AKS FLA+MSHE+RTP+N ++G +++E + Sbjct: 656 RDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLETTPL--- 712 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + YI + L L+ +ILDLSR+EAG+ E+ E+ + DI+ + + Sbjct: 713 -DAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVSGLFAVT 771 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400 A+ KN+ + ++ P + V DE +RQV+ NL+ NA+KFT G V +T G Sbjct: 772 ARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITALPAKDDG 831 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D G GIAE + + F Q ++ QG GLGL I Q ++ GG Sbjct: 832 DYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGLMGGTIT 891 Query: 458 IRSKLREGVEVIAILPNT 475 I S L +G +LP Sbjct: 892 IESTLGQGTSAHVVLPFK 909 >gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 646 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + ++ + + + + W + A ++G + + Sbjct: 140 TIAASVIAVVGAFAVALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199 Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 WR + + L + + LV L SA + S L L V Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259 Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217 + P ++ + + S + + + Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E D R AE + K+ FLA++SHELRTPLNAI+GFS+V+ E Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L+ E +EY G I +SG+HLL+++N +LD+SRI G ++ + + ++R C Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +++L+A I + P+ ++ AD + RQ+++NL+SNAVKFT GGRV V V Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G I + D+G GI E ++P + F Q + +G GLGL + + + HGG Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 458 IRSKLREGVEVIAILPN 474 + S +G V LP Sbjct: 559 VESAPGKGTAVTVTLPL 575 Score = 41.4 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112 + +A P + +W + + A ++ L ++ + + +W L Sbjct: 39 FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G+ L L + + +++ S A + V + Sbjct: 99 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAVALSG 158 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231 L A+ I + TA+ + + E E A Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202 Query: 232 KSLSDETRKRA 242 + +E R R Sbjct: 203 RMQDNEARDRL 213 >gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864] Length = 1482 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 DL + V + S+ +++ + N AKSRFLA+MSHE+RTPLN ILG ++++ ++ Sbjct: 605 DLTDQRRVNAAESEALKEK--QANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSL--- 659 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ +Y+G I S Q LL +IN+ILD S+IEAG+ + + + I + +L Sbjct: 660 -NDEQSDYLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPS 718 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A KN+ + IDP L V+ D +Q+++NL+SN +KFT G V + Sbjct: 719 AATKNLLLSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTT-GSVSLRCLLDEDVDD 777 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I D G GI + + F Q +I + G GLGL I +S++ GG Sbjct: 778 QNMVVRFEIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVNLMGGTI 837 Query: 457 LIRSKLREGVEVIAIL 472 + S L +G + Sbjct: 838 GVDSTLGQGSRFWFTI 853 >gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 742 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 8/279 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 50 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 109 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 110 HELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 165 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L + + E I + A EK +EI K+DP + + D ++Q++ NL+ Sbjct: 166 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 225 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 N++KFT G V V + +G + ++D G GI+E + + +F Q +I Sbjct: 226 GNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 285 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q +++ GG+ + S+L +G L Sbjct: 286 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 324 >gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] Length = 1337 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 10/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + +AE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 745 ITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDT--- 801 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I +SG LL +IN+ILD S+I+AG+ L L + + + ++ RA Sbjct: 802 -RQRTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAA 860 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401 EK+IE+ +IDP+L + D +RQV+ NL+ NA+KFT G + VT S Sbjct: 861 EKDIELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSPASEGSVD 920 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + + D G GI ++ V F Q + +G GLGL I ++A G S Sbjct: 921 LTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAES 980 Query: 461 KLREGVEVIA--ILPNTRVLNFI 481 EG +P + + Sbjct: 981 TPGEGSVFCVKITMPVEKRTETV 1003 >gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 590 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 6/236 (2%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + R E + F+A++SHELRTPL I ++E + + E +++ I+ Sbjct: 352 QHRLEA---MRKEFVANVSHELRTPLTTIKSYAETLLDGAL--EEAEISRQFTSVINDEA 406 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L++++L+LSR++ + I + I++ I + + + K I I L Sbjct: 407 DRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEEL 466 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V+AD + QV N+LSNA K+T GG++++ V + + + ++ KD G GI + ++P Sbjct: 467 PEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEY-AEKMVKVTFKDTGVGIPKEDLP 525 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + G GLGL IA+ I+ HGG+ I S+L +G VI +P Sbjct: 526 RIFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIPA 581 >gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1] Length = 671 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 18/286 (6%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKS----------LSDETRKRAEEENLAKSRFLAS 255 ++ V + + D L+ E + R AE N AKS FLA+ Sbjct: 234 RRKETEVALKEARKLNDKLVTEKRNVEEKEKIQQGLIENLKNARIEAESANKAKSEFLAN 293 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTPL+A++G +E++ T+ ++ + Y ++ S Q LL LIN+ILD SRIE Sbjct: 294 ISHELRTPLHAVIGMTELLIETTL----DKDQRYYSDTLYSSAQMLLMLINDILDFSRIE 349 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374 AGR + + +L ++++ I +++ +A K + + ID ++ SV ++QV+LN Sbjct: 350 AGRIDEDKEVFNLRQLLQDIIAIMKEKASCKGLVLASDIDENIPSVISGYPGYIKQVLLN 409 Query: 375 LLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 L+ NA+KFT G + +S++D G GI E + + F Q + Sbjct: 410 LIQNAIKFTYRGQVTVTVTVVSETPQDVSLKVSVQDTGIGIPEEQQHLIFNPFTQIDASS 469 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 E G GLGL I + ++A GG+ + S R+G L +V Sbjct: 470 TRKEGGTGLGLAIVRKLIAFMGGEIQVTSSERDGSTFSFTLAFDKV 515 >gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1067 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 143/265 (53%), Gaps = 18/265 (6%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 I E + A+ + ++ A+ N AKS FLASMSHELRTPLNAILGF++V+ Sbjct: 573 LFTAIVRDITERKQAEEALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLAR 632 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + E K + I RSG+HLL+LIN+IL++S+IEAGR ++S+ L ++ Sbjct: 633 NSA---LKEEEKTNLEIISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLE 689 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ML+LRA+ K +++ + + DE +RQV++NL+ NA+KFT GG VT+ Sbjct: 690 DMLRLRAEAKGLQLIFDSASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGG---VTLRV 746 Query: 396 TSGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 SG ++D GPGIA EI + +FGQ KS QG GLGLPI+ Sbjct: 747 KSGGKVPLESPKMATITFEVEDTGPGIALDEIDNLFEAFGQTETGRKSN-QGTGLGLPIS 805 Query: 446 QSIMANHGGQFLIRSKLREGVEVIA 470 + + GG+ + S G Sbjct: 806 KKFVELMGGEIRVSSVPGNGSLFAF 830 >gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 16/324 (4%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + + + + + L + S I + KS + A + Sbjct: 196 AASQLDLAPAAEGRPRAPRLRPERLGAIADHLRSVLDLILFSGHKSLLTSTMHVASIRES 255 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 EL + ++ +R +E + KS FLA++SHELRTPL +I+G+SE++ GPL + Sbjct: 256 FRELSQKNAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIMGYSEMLAEGIGGPLTD 315 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +E+I I + LL LI +LDLS++E+G + + +++ ++ E + A Sbjct: 316 E-QREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVGPVLVEAASTIAPAAS 374 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 +K +E+ + + L V D +RQV +NL+ NAVKFT GG V + S Sbjct: 375 KKGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEVLLVARAVSEDMDDLP 434 Query: 401 -----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 I + D G GI GE V F Q + G GLGL I + ++ Sbjct: 435 GLVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTREHGGTGLGLSIVKRLV 494 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 H G I G + LP Sbjct: 495 EAHSGTVRIEPNDPRGTVFVVKLP 518 >gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 890 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +D+L A ++ ++ + AE AKS FLA+MSHE+RTP+NAILG + + + Sbjct: 132 RDELFAVMQTKNQELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRLD 191 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P +Y+G I RS QHLL +IN+ILD S+IEAG+ +L + L ++ ++ Sbjct: 192 P----QQADYVGKIQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVG 247 Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-- 397 +A+ K IE+ ++D L ++ + D + Q+++N +NAVKFT G + V V Sbjct: 248 EKAEAKGIELLFEVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQ-GEILVKVTCLEKL 306 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + S++D G G+++ + + SF Q + G GLGL I++ + A GG+ Sbjct: 307 PKEVLLHCSVQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGE 366 Query: 456 FLIRSKLREGVEVIAI 471 ++S+ +G Sbjct: 367 VGVQSEPGKGSTFWFT 382 >gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 659 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 22/343 (6%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A++ S + ++ T ++ I+ TA + Sbjct: 155 VAITESVIIEGQQRIVYSSFTVAALLMFLTYLLIRNMARSIANPIEQLTAGVELIKNGDY 214 Query: 207 LFKSN----VKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLAS 255 ++ +++ + + L LE A E R AE + AKS FLA Sbjct: 215 RTRAPDIRGLELSRLRNSINQLAVALEKASVEQTEHLGMIETARNEAESASKAKSEFLAI 274 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTP+N +LG ++++ +E KEY RS +HL+ +I++ILD S+IE Sbjct: 275 MSHELRTPMNGVLGMLQLLQET----QQDEEQKEYTHVAMRSTEHLIAIIDDILDFSKIE 330 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVIL 373 GR + +L +V E + + + +EK + + Q+ + L + V AD +RQV+ Sbjct: 331 RGRLSIDPIEFNLRALVEETLNAFRPQVEEKGLLLHQEYEGELQDALVTADPARIRQVLA 390 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL++NA+KFTA G + V W + ++D+G GIA + + +SF Q Sbjct: 391 NLINNAIKFTAE-GYIRVHANWEEIGADKVCFTCEVEDSGIGIAPEQQRRMFSSFQQADQ 449 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL IA+ ++ G+ + S+ +G L Sbjct: 450 SNSRRYGGTGLGLAIAKRLLELMEGEIFVESESGKGSCFKFAL 492 >gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032] gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter turicensis z3032] Length = 919 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +LI ++ + L + L V P+ ++T + LD + G + L Sbjct: 177 IAISLLMMLICMACAVLFAWRLMRDV---TAPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL++IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTP----TQRDHLNTIERSANNLLSIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L A +K +E+ + + V D Sbjct: 347 DVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QVI NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHI 516 >gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 587 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHELRTP+ +I GF E + + E+ Y+ I L L Sbjct: 360 LEQMRRDFVANVSHELRTPMTSIQGFVEALLDGL--AEDKESQDRYLNVILDETVRLNRL 417 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 ++++LDLSR+E G I L + + LQ + ++ + + ++S+V + Sbjct: 418 VSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTGN 477 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV++NLL NA+ FT GG++ ++ G + + D G GI E + F Sbjct: 478 RDRIQQVLINLLGNAISFTPPGGKITLSAK-DVGDKVEVQVTDTGMGIPPEEQDKIWERF 536 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A + G GLGL I + I+ HGG + S +G L Sbjct: 537 HKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPGKGSTFYFTL 584 >gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2] gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2] Length = 918 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + + + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QVI NL+ NA+KFT GG + + V + + I+D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ G + Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516 >gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] Length = 1763 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 13/255 (5%) Query: 225 IAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 IA + K LSDE ++ A+ N AKS FLA+MSHE+RTP+NAI+G S++ + Sbjct: 1010 IANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL-- 1067 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + Y+ I R+ + LL +IN+ILD S+IEAG+ ++ L I+ + M + Sbjct: 1068 --DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSV 1125 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A +K +E+ + P + + D + QV++NL++NA+KFT G V +++ + Sbjct: 1126 KAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTER-GEVMLSISELARDE 1184 Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++D+G G+ + + SF Q + G GLGL I + ++ GG+ Sbjct: 1185 DQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEI 1244 Query: 457 LIRSKLREGVEVIAI 471 + S+ G Sbjct: 1245 GVDSQFGNGSTFYFT 1259 >gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1201 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 16/379 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 +C ++ + + + + +A+ +++ +++ L Q Sbjct: 405 VCIGVIEVGLLHSPDSLEVAFLEHNLEAMAIGVNSALDYIRLQNFLEETQAQAEELQAQH 464 Query: 179 IMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 ++ A L + L ++N ++ ++ E++ Sbjct: 465 TEMENLNAELEMQAQKLQASEEELRVQQEELQQTNTELEERGLLLEEKNDEIQKKADEL- 523 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E KS FLA+MSHELRTPLN+IL S ++ L + EY I Sbjct: 524 ------ELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATLTPDQV-EYARVIQS 576 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG LL LI+EILDLS+IEAG+ +L +S+ +I E + L A+EK ++ + P Sbjct: 577 SGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAITVKP 636 Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGRGQYISIKDNGPGIA 413 + +V D + Q++ NLLSNA+KFT+ G+V + + + + +KD G GI Sbjct: 637 DVPTVIETDRMRLGQILKNLLSNAIKFTSS-GQVSLRIERSTSAASTLCFVVKDTGIGIP 695 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + P V +F Q + K G GLGL I++ + GG+ + S++ G E +LP Sbjct: 696 PEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSSEVNVGSEFTILLP 755 Query: 474 NTRVLNF--IPEDNHESTQ 490 ++ + PE Q Sbjct: 756 LSKDMPEAVSPEIPKPEPQ 774 >gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 722 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 110/467 (23%), Positives = 188/467 (40%), Gaps = 38/467 (8%) Query: 39 TLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVMNSD 97 L ++S + + L +++LL+ F + W I + L ++ Sbjct: 12 RLLLQSHYYEADKLMMWILLIHAFVAIFVTANYYNTYWLGIVGSAVILTLCSAAFILLRG 71 Query: 98 IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF 157 + +L I I + + LTIYK + + + L + Sbjct: 72 TLWFRLIAAVAIMLFSAIYIQQHLGRIEMHFHVFIGLAILTIYKDVVPMFIATAAILIHH 131 Query: 158 MLPYAVFLS-FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 +L + + + I M+ TYI + + ++++ Sbjct: 132 LLFNWMQSLHVILGNEPVMIFSYGCGTEYVILHGVMVIAETVLLTYIIKNSAQQFIEVIR 191 Query: 217 CQAEKDDLIAELEVAKSLSDE-------------------------TRKRAEEENLAKSR 251 Q D +L +E ++ A N KS Sbjct: 192 AQEALDISNQQLSRFNITLEEQVRLRTQELESALQKHIGMAEDLKMAKEEAVSANQLKSE 251 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN+++GFS+++E E +Y+ I G+ LL+LIN ILDL Sbjct: 252 FLANMSHEIRTPLNSVIGFSDLLEQEV----KEPKQVQYLHAIKNGGKALLSLINNILDL 307 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IE+G ++ + +RE + M ++K +E+ +I+ +L + ADE +RQ Sbjct: 308 SKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVTYEIEKNLPEWIIADEIRIRQ 367 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFG 425 ++ NL+SNA+KFT G V ++V T + SIKD G GI+ + +F Sbjct: 368 ILFNLISNAIKFTEK-GSVRLSVLSTPSKNEGFVDLIFSIKDTGIGISPKNQIKIFDAFI 426 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q G GLGL I + + G I S+L +G E + Sbjct: 427 QNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGSEFTFTI 473 >gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] Length = 1214 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 107/410 (26%), Positives = 171/410 (41%), Gaps = 29/410 (7%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + + +G+ + + + + G L L I +L L + Sbjct: 600 RFALGEGLVGQAALEAKQITIDNVPPGSITVETGLSRSTPAQIVVLPIQFEDQVLGVLEL 659 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITY 205 ++ ++F + FL+ F + I + + L A Sbjct: 660 ASFTSFSEVHMAFLTQFVEATGPTINTIKANSRTEALLKESQRLATELQKRSDELQRQQE 719 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ A +E+ ++ R+ EE + KS FLA+MSH Sbjct: 720 ELRRSNAELEEKAALLAKQNRAIEIQNFQIEQARRALEERAEQLAISSRYKSEFLANMSH 779 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ G L E+ IH +G LL LIN+ILDLS++EAGR Sbjct: 780 ELRTPLNSLLVLAKLLADNAEGNLT-PRQVEFAKTIHEAGTALLQLINDILDLSKVEAGR 838 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 ++ ISL +V A++K + ++DPS ++ DE+ ++QV+ NLLS Sbjct: 839 MDIHPQQISLPRLVEYMEATFAPLAEDKELAFTVRLDPSAPQEIYTDEQRLQQVLRNLLS 898 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSF 424 NA+KFT G V + VG QY + D G GIA ++ + +F Sbjct: 899 NAIKFTHE-GEVRLEVGRAPADVQYADEALKNTPDMLAFRVIDTGIGIAPNKLDVIFEAF 957 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 Q G GLGL I + I GG+ + S EG LP Sbjct: 958 RQADGTTSRKYGGTGLGLSICRQIARLLGGEIHVASTPGEGSTFTLYLPA 1007 >gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1099 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 34/381 (8%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 + + + ++ I + A + L P ++A Sbjct: 616 APLSAADDSPVIDRVLNYFIPFVAIILFIQAIYAAIKRVKFANLFLLFYVLCISPFILAF 675 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 S ++ I+ + L Y++ + + QAE Sbjct: 676 VITFSGSDGMIRIAYVLWTLSTLGLMLITAYYIKQ----LREDQAE-------------- 717 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +++A+ AK +FLA+MSHE+RTP+NAI G ++++ + KEY+ I Sbjct: 718 ----KEKAQASERAKHQFLANMSHEIRTPMNAIKGMTDILLRR----NPKDDQKEYLEGI 769 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +S LL +IN+ILD+S+IEAG+ EL S++++V ++Q +A+EK +E+ + I Sbjct: 770 KQSSDSLLIIINDILDISKIEAGKVELENEPFSVVELVNNVHTIMQFKAEEKGLELLKDI 829 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPG 411 +V D +RQ++LNL+ NA+KFT G V +V + I D G G Sbjct: 830 PEENLTVQGDATRLRQILLNLIGNAIKFTEK-GVVTTSVKSEQSGEKVNVHFIISDTGIG 888 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + + SF Q G GLGL I++ ++ HGG+ + S+ +G + Sbjct: 889 IDQDRMDKIFKSFEQAYSDTSRKFGGTGLGLSISKKLVELHGGKIWVESEKGKGSQFHFT 948 Query: 472 LPN----TRVLNFIPEDNHES 488 +P T V PED + + Sbjct: 949 IPYVIAGTAVDTPQPEDANAN 969 >gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] Length = 875 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 10/243 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + ++ AE+ KS FLA+MSHE+RTP+N I+G S + + P ++Y+ Sbjct: 130 AAHQAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDP----RQRDYVKK 185 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I ++G+HLL +IN+ILD S+IEAG+ + E + +++ M+ + EKN+E+ Sbjct: 186 IQQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFH 245 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408 L + D + Q+++N +NA+KFT G V ++ ++ D Sbjct: 246 FPQDLPHKLIGDPLRLSQILINYGNNAIKFTEK-GEVIISAEILERDDEGIFIKFNVSDT 304 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + + + SF Q + G GLGL IA+ + GG+ + S+ +G Sbjct: 305 GIGLTKEQKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTF 364 Query: 469 IAI 471 Sbjct: 365 WFT 367 >gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] Length = 842 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 153/289 (52%), Gaps = 4/289 (1%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 M A ++ ++ ++ + A + +L + + +AE N AK Sbjct: 542 LVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAESANKAK 601 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLNAI GFSE++ E GPL ++ YK Y DIH SGQHLL LIN+IL Sbjct: 602 SEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDIL 661 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+S+IEAG+ L ++ L D+ + + +++ RA+ +++ P L + AD + ++ Sbjct: 662 DMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEADYRAVK 720 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 QV+LNLLSNA+KFT G V V +S+ D G GIA+ ++ + F Q Sbjct: 721 QVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQ 780 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL + +S++ H G + S EG V LP Sbjct: 781 VESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829 >gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 788 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 161/345 (46%), Gaps = 17/345 (4%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + I+ + S++ + L + L ++S ++ L Sbjct: 285 QNQAHPLIHLKTVDTTHHADSSIQSAKLVIGILACLGT-FSGLLLAWMISRGIVSPILEL 343 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + L + + + + Q E L ++ AE+ + KS Sbjct: 344 SQSAELIASGNVEHRI------SIDSQDEIGRLAETFNRMVEDLVIAQQDAEKASHIKSS 397 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+ AILGF+E+++ ++ +I I ++G++LL LIN+ILD+ Sbjct: 398 FLANMSHEIRTPMTAILGFAEIMKQR----NDDPEMSRHIDTIRKNGEYLLELINDILDV 453 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEA + E+ SLI+++ + ++++RA ++ +++ KID S+ + +D +RQ Sbjct: 454 SKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGSIPRWIQSDPVRLRQ 513 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +++NLLSNA+KFT G V + V T+ + D+G G+ + +I + F Q Sbjct: 514 ILINLLSNAIKFTRQ-GHVQLIVTASSIDTNEPVIQFDVIDSGIGMTDEQISRLFQPFMQ 572 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I + + GG+ + S+ G Sbjct: 573 ADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFSVT 617 >gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 869 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 9/282 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 ++ T + + E ++ LE + +++ A + N+AKS+FL Sbjct: 169 VASVVILTSDISPRKQLERDLQQSFGELEEFNRRLEESVLKTEQMAAEARDANVAKSQFL 228 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTP+N ++G ++++ + ++Y I RS + LL +IN+ILD S+ Sbjct: 229 ANMSHEIRTPMNGVIGMADLLLETALDT----EQRKYAQTIIRSARSLLKIINDILDFSK 284 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372 IEA R+EL S L D++ E +L + A E +E+ + P + + + D +RQ++ Sbjct: 285 IEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLIGDSGRIRQIL 344 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGS 428 +NLL NAVKFT +GG V V + ++ S+ D G GI ++ ++ F Q Sbjct: 345 VNLLGNAVKFTPVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQAD 404 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + G GLGL I+ + GG+ + S EG Sbjct: 405 GSTARKYGGTGLGLSISNHLATRMGGRINVESHPGEGSVFSF 446 >gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 579 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M +++ +++ I + + L +L Sbjct: 349 LEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSL 406 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS++E + + + I+ E +LQ +A EK I + V D Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL +NA+ +T G V ++V I + D G GI + EIP + F Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISVN-VKETVVDIKVSDTGIGIQKEEIPRIFERF 525 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G + S+ +G L Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573 >gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 579 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + M +++ +++ I + + L +L Sbjct: 349 LEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSL 406 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS++E + + + I+ E +LQ +A EK I + V D Sbjct: 407 VQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL +NA+ +T G V ++V I + D G GI + EIP + F Sbjct: 467 AHRLKQVFLNLANNALTYTPEKGTVGISVN-VKETVVDIKVSDTGIGIQKEEIPRIFERF 525 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G + S+ +G L Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573 >gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 754 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 7/254 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + + R AEE KS FLA+MSHE+RTP+N ++G ++++E + Sbjct: 353 ERDVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL-- 410 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E K Y I S + LL+LIN++LDLS+++AG LSE L ++ + + + Sbjct: 411 --DEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEP 468 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399 +AQEK I + I P + + D++ +RQV+LNL+ NAVKFT GG V VT R Sbjct: 469 QAQEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDR 528 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G GIA+ + + F Q AI G GLGL I++ + GG+ + Sbjct: 529 LRLRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDV 588 Query: 459 RSKLREGVEVIAIL 472 S +G L Sbjct: 589 TSDPGKGSCFSVHL 602 >gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 648 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + ++ + + + + W + A ++G + + Sbjct: 142 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 201 Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 WR + + L + + LV L SA + S L L V Sbjct: 202 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 261 Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217 + P ++ + + S + + + Sbjct: 262 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 321 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E D R AE + K+ FLA++SHELRTPLNAI+GFS+V+ E Sbjct: 322 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 381 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L+ E +EY G I +SG+HLL+++N +LD+SRI G ++ + + ++R C Sbjct: 382 GAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 441 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +++L+A I + P+ ++ AD + RQ+++NL+SNAVKFT GGRV V V Sbjct: 442 LMRLKADASGIALTSAPVPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 500 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G I + D+G GI E ++P + F Q + +G GLGL + + + HGG Sbjct: 501 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 560 Query: 458 IRSKLREGVEVIAILPN 474 + S +G V LP Sbjct: 561 VESAPGKGTAVTVTLPL 577 Score = 41.8 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112 + +A P + +W + + A ++ L ++ + + +W L Sbjct: 41 FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 100 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G+ L L + + +++ S A + V + Sbjct: 101 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 160 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231 L A+ I + TA+ + + E E A Sbjct: 161 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 204 Query: 232 KSLSDETRKRA 242 + +E R R Sbjct: 205 RMQDNEARDRL 215 >gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3] gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 935 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + E I ++ AQ K +E+ I P++ V D Sbjct: 355 DILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + + + + D G GI E + + Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTGIGIDENQQDFLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 526 >gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1162 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 100/283 (35%), Positives = 155/283 (54%), Gaps = 20/283 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + A+ + ++ AE N AKS FLA+MSHELRTPLN+ILGF++++ Sbjct: 678 ISDRKQAELELRQAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLMS---YENNLT 734 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +E + I+RSG+HLL+LIN+ILDLS+IE+GR L+ S LI+++ MLQ++ Q Sbjct: 735 SSLQERLQIINRSGRHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVKVQ 794 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K++++ + + L + V DEK + QV++NLLSNA+KFT G + + V Sbjct: 795 SKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSNALKFTQQ-GSITLRVRAEQKEKHSC 853 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA EI + F Q A + QG GLGL I+Q ++ GGQ ++ Sbjct: 854 RLCFEVEDTGVGIAPTEIDKLFKVFVQA-QAGNNLSQGTGLGLAISQKLVQLMGGQIQVQ 912 Query: 460 SKLREGVEVIA----------ILPNTRVLNFIPEDNHESTQYK 492 S L G LP+ ++ + E Y+ Sbjct: 913 STLNRGSTFSFEIKVQLSQIASLPSEQINQRVISLAPEQPNYR 955 >gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 178/374 (47%), Gaps = 13/374 (3%) Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176 +GL W L+ +V P + + TL + L ++ F+ P++ Sbjct: 321 LGLDW-LIAIVIPESDFMAQIYANIRTTLALCLGALGIATFLGILTSRWILQPILRLQIA 379 Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLS 235 ++ LD ++ LS + + + + + L ++ + Sbjct: 380 SNSLAAGQLDQAIEVKGIHELSSLGSAFNSMARQLQESFQALEDNNAKLDQRVQQRTAEL 439 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 +++AE N AKS F+A+MSHELRTPLN ILG+++V+E P ++ ++ + IH Sbjct: 440 KVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQQQVHIIH 496 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + G HLL +IN+ILDLS+IEAG+ +L + L ++ ++RA +K +E +D Sbjct: 497 KCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVD 556 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHV-TVGWTSGRGQYISIKDNGP 410 P L V DE+ +RQV+ NLLSNA+KFT G +V V V + R + D G Sbjct: 557 PGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRFGVTDTGV 616 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + +F Q + +G GLGL I++ ++ G Q ++S + +G + Sbjct: 617 GIAPAHLDQLFNAFVQVGD-RQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFSF 675 Query: 471 IL--PNTRVLNFIP 482 L P P Sbjct: 676 ELEVPLATEWELSP 689 >gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 578 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 3/228 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHEL+TP+ +I GF+E + + + E E++ I + + L +L Sbjct: 349 LEQMRKDFVANVSHELKTPITSIKGFTETLLDGALD--DREALLEFLSIILKESERLQSL 406 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++LDLS+IE + LS ++ E +LQ +A EK+I I V D Sbjct: 407 VQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKASEKDIRFELNIPKDPLYVQGD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV LNL +NA+ +T G V ++ Q I + D G GI + EIP + F Sbjct: 467 VYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDIQ-IEVADTGIGIEKEEIPRIFERF 525 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ H G+ ++S+ +G I L Sbjct: 526 YRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQGQGTIFIVAL 573 >gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 918 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 143/277 (51%), Gaps = 9/277 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + I + + + + + DL A + S E + +AE N AKS FLA+MSHE Sbjct: 365 YVAIQKDITQKKLMDEELEIYRRDLEALVVKRTSEMFEAKTQAEAANKAKSEFLANMSHE 424 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+GF+E+ + ++ K+Y+ + Q LL++INE+LDLS+IEAG++ Sbjct: 425 IRTPMNAIIGFNELCLRTQL----SDKQKDYLTKAGSAAQSLLHIINEVLDLSKIEAGQH 480 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLS 377 L + + +V+ ++ + A +K + I +D + + D ++Q++LNL S Sbjct: 481 MLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIEQYPLRGDPMRLQQILLNLCS 540 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KF+ G + +G SG+ +++D+G GI+ ++ + F Q + Sbjct: 541 NAIKFSTQGSISIRCQLGAISGQAVELKFAVQDSGIGISPAQLGLLFKPFSQADSSTTRR 600 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + ++ GG+ + S+ G Sbjct: 601 FGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFT 637 >gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 872 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 10/287 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + L + + KD L E++ + R AE N AKS FL+SMS Sbjct: 364 LYLISAVLDLSERKQAENELKRYKDHLEEEVQQRTADLVLARDAAEAANRAKSVFLSSMS 423 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAILGFS ++ +TM +E + I+RSG+HLL+LIN++L++++IEAG Sbjct: 424 HELRTPLNAILGFSALMSRDTMLSH---IQRENLNIINRSGEHLLSLINDVLEMAKIEAG 480 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R ++ A L +VR+ M+ +RAQEK +++ + DE +RQV++NL+ Sbjct: 481 RVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSDFPRYIMGDEARLRQVLINLV 540 Query: 377 SNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT GG + + G I ++D+G GI + + +F Q S Sbjct: 541 GNAVKFTQHGG-ITMRFGIKPNLLPERLLIEVEDSGIGIKPEDQQRIFDAFVQIGDL--S 597 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 A++G GLGL I + + GG + S G LP +V Sbjct: 598 AQKGTGLGLTITRQFVQLMGGVITLESTPGVGAVFSVELPIEKVSPA 644 >gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89] gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1] gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88] gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a] gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA] gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA206] gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli UTI89] gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY [Escherichia coli APEC O1] gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli S88] gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli ED1a] gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli LF82] gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA] gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli IHE3034] gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146] gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str. NRG 857C] gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327] gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252] gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263] gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA206] Length = 918 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516 >gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 931 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 95/340 (27%), Positives = 159/340 (46%), Gaps = 23/340 (6%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212 + P+ +S + LDI + G L L + ++ + + Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I ++ + + +LE+ D +KRA+E KS FLA+MSHELRTPLN ++GF+ Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + N + K+Y+ I S +LL +IN+ILD S++EAG+ L D + Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388 E + +L A EK +E+ KID + + D ++QV+ NL+ NAVKFT G Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDNRIPPGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + + ++D G GI+E + + +F Q +I G GLGL I Q + Sbjct: 430 VELKSDIDNNIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489 Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481 ++ GG+ + S+L +G LP ++ ++ Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIKMNKTDLPVSQPIDTT 529 >gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 545 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 12/270 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + V + EKDD L V ++ AEE + KS FLA++SHELRTPL Sbjct: 281 QLLATAVGAGLQRLEKDDETNRLRV-------AKEAAEEADRTKSGFLATVSHELRTPLT 333 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+G+SE++ + N Y + +H +GQHLL LIN+ILD S+IEAG+ E++ Sbjct: 334 TIIGYSEMLLEQA-AVDNLPQYTADLQQVHSAGQHLLALINDILDFSKIEAGKLEIANDP 392 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + ++ + ++ ++ A++ N I P L D +RQ +LNL+ NA KFT Sbjct: 393 YAPASLIHDLMVSVEPLAKKNNNRIELDCPPDLGRAMGDPTRIRQCVLNLVGNACKFT-R 451 Query: 386 GGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V VT + +++ D G G+ ++ + +F Q G GLGL Sbjct: 452 DGLVKVTARRAPVSGVDSVQVAVSDTGIGMTPEQVGRLFQAFTQVDSTAGRKFGGTGLGL 511 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+Q + A GGQ +RS+ +G + Sbjct: 512 AISQRLCAAMGGQITVRSEPGKGSTFTMTI 541 >gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B] gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B] Length = 465 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 134/244 (54%), Gaps = 9/244 (3%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + ++ ++ + K+ F+A++SHELRTPL AI ++E + ++ E+ +E++ ++ Sbjct: 228 EIELEKLKQLDKMKTEFVANISHELRTPLTAIKAYTETLLN---MEVDRESQREFLETVY 284 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + L +L+N++LD + IE+G EL S L ++++E + L+ A++ ++I + Sbjct: 285 EQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSCE 344 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGI 412 S+ AD++ ++Q I NL+ N++KF+ V+++V I I+DNG GI Sbjct: 345 S--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSII-IEDNGIGI 401 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + + F +G ++ G GLGL I Q I+ HGG+ + S L EG ++ Sbjct: 402 SQEDKEKIFEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTFELVI 461 Query: 473 PNTR 476 P + Sbjct: 462 PYRK 465 >gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 919 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 13/251 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ +++ E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDL 736 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + LL LI++ILDLS+IEAG +E + + + + + Q++ Sbjct: 737 EERREYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 796 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ PS SV +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 797 Q-GVELVFDPHPSECSVVSDRNRLHQVISNFVNNALKFTSSGS---IRVGYEEKEECVEF 852 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI G++P + F + + G GLGL I +SI+ GG + S+ Sbjct: 853 YVRDTGIGIPAGQLPHIFERFVKL----NTFIHGTGLGLSICKSIVEQLGGVIGVDSEEG 908 Query: 464 EGVEVIAILPN 474 +G +P Sbjct: 909 KGSRFWFTIPK 919 >gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 916 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 16/370 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL-IALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L W L L GT Y +++ S L+ L+++AL + ++ + ++ Sbjct: 148 LGWVELELSHQGTLLIGYRSLFASLLLIAGGLAVTALLALRMGRSINEPLRAIKAGVAQL 207 Query: 178 -----AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + + + A + + I + + +E+ Sbjct: 208 KDGHLETRLPPLGSHEMDELAAGINRMAEALQNAQEELQHSIEQATEDVRQNLETIEIQN 267 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P ++Y+ Sbjct: 268 IELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLA 323 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351 I +S LL +INE+LD S+IEAG+ L +L D++++ + +L A EK +E+ Sbjct: 324 TIEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELIS 383 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408 + ++ D ++QV+ NL+SNA+KFT G V V IS+ D Sbjct: 384 LIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDT 443 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 GIGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 503 Query: 469 IA--ILPNTR 476 LP R Sbjct: 504 WISLSLPKAR 513 >gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1005 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 24/330 (7%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--------------FTYITYHL 207 +F+ + + ++ + + I + + Sbjct: 172 LMFIFSLTIFLIMAFIFLWKRVIRPIVFISKILPEYAIGSDLEPLKWKYNDEIGIFVNTF 231 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + K + E + +L + R AE+ + AKS FLA+MSHE+RTPLN I Sbjct: 232 NDTLEKRNEWENELTLINRQLLNTNKDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGI 291 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G ++++ + K+Y+ I RS + LL ++N++LDLS+IEAG+ + Sbjct: 292 IGLTKLMLDLELSN----KQKDYMRKIDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFV 347 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 + + + ++ +EK +E+F +IDP + + D ++QV++NL+SNAVKFT Sbjct: 348 FESVFKSIDDLFTIKIEEKGLELFFEIDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDE- 406 Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G +H+ T S++D G GI E+ + T+F Q +G GLGL Sbjct: 407 GEIHIKAEVTEITDSDISILFSVRDTGVGIPANELEKIFTAFTQVDETSTRRYEGTGLGL 466 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I +++++ GG + S + G L Sbjct: 467 AITKNLVSMMGGTVTVESDINMGSIFSFKL 496 >gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 622 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 7/245 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+R E + F+ ++SHEL+TP+ AI G +E + E + P E + ++ IHR Sbjct: 385 ERRRLE---QVRKEFVTNVSHELKTPVTAICGLAETVVEEDLAP---EERRHFLELIHRE 438 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L L+ ++LDLSR+E+ L + L ++ R+ + A++ +++ + Sbjct: 439 ARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMARDVVQDYGYAAEQAGTDLYLDKEGD 498 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 D +RQV+ NL+ NA+K+T GGRV V V T R + + D G GI + Sbjct: 499 -CRAEVDPDRVRQVLSNLIDNALKYTPAGGRVDVRVLGTDPREVKVEVADTGVGIPPEDR 557 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 V F + A G GLGL I + ++ HGG+ + S++ +G P Sbjct: 558 DRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLHGGRVGVESEVGKGSRFFVQFPRRWP 617 Query: 478 LNFIP 482 + +P Sbjct: 618 PDSLP 622 >gi|284052131|ref|ZP_06382341.1| periplasmic sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570319|dbj|BAI92591.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 573 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 161/379 (42%), Gaps = 39/379 (10%) Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDIS 188 +P +Y + + L+++ L + + + AI+ +L Sbjct: 190 SPAATNLYNLSGEALQLAVNFRDRADLALVELQTGQSIARNIILISLLTAIVLGWLLAKY 249 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILS-------------CQAEKDDLIAELEVAKSLS 235 +A + I + + + L + LI + Sbjct: 250 TGQAIADPIEQMISIADQVGEDSDFALRIPLTEDQNTEIGKLTTTLNQLIKRVAQYTEEL 309 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + AE N +KS FLA+MSHELRTPLNAI+G+SE++ E+ ++ + + I Sbjct: 310 QKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPD-LERIQ 368 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +G+HLL++I++ILD+S+IEAG L ++ ++ + + ++ + K Sbjct: 369 TAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNQNALKVKTA 428 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------- 398 L +++AD +RQV+LNLLSNA KFT G + + V + Sbjct: 429 KDLGTMYADLPKVRQVLLNLLSNASKFTDK-GTITLQVQRVTKIPNEWKKDTSNAERFAS 487 Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + +KD G G+ + ++ + +F Q + G GLGL I+Q + GG Sbjct: 488 AKTQYLVFQVKDTGIGMNQEQVQHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILGGG 547 Query: 456 FLIRSKLREGVEVIAILPN 474 ++S+ G + LP Sbjct: 548 IYVKSREGVGSTFVVWLPV 566 >gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36] gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36] Length = 903 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + LI E + + + ++ AE+ N+AKS FLA+MSHE+RTPLN ++G S ++ + P Sbjct: 355 NKLIEERHINEKQIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTKLTP 414 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + ++++ I S Q LL LIN+ILD S+IE+G ++ L +++ + + ++ Sbjct: 415 ----SQQDHLAIIENSSQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITP 470 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WT 396 A KN++ I P L DE +RQV++NLLSNAVKFT G+V +T+ Sbjct: 471 SAAAKNLDFSVNIAPELPNEFLLDEHRLRQVLMNLLSNAVKFTDS-GQVSLTLSSKVIEN 529 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S Y S+ D G GI E + + F Q +I G GLGL I+ ++ GG+ Sbjct: 530 SRSELYFSVADTGTGIEEDKQQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEI 589 Query: 457 LIRSKLREGVEVIAILPNT-----RVLNFIPEDN 485 + S +G + RV +P + Sbjct: 590 GVDSTKGQGSNFYFTIEAEFTAEVRVQKIVPTNT 623 >gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 789 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 141/263 (53%), Gaps = 8/263 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + +L +++ + ++ EE AKS F+A MSHE+RTP+NA++G S + Sbjct: 157 ALETINQELDRKVQERTKELENAKRIVEESLEAKSSFVARMSHEIRTPINAVIGLSHLAL 216 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ N ++YI I SG++LL+L+N++LD S+IEAG+ + E S IV+ Sbjct: 217 KTSL----NHEQQDYINTILSSGENLLSLVNDVLDFSKIEAGKMGIEEVPFSPKSIVQHA 272 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 I M ++A+EK + + I PSL + D ++QV++NL++NAVKFT GG V + Sbjct: 273 INMNAIKAEEKKLTVTVDISPSLPPMLLGDPLHIQQVLVNLVTNAVKFTERGGVCVRMYT 332 Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + + D G GI++ + + SF Q ++ G GLGL I++ + + Sbjct: 333 DENDDKSVLLRCDVIDTGIGISKAYLDQLFQSFHQADDSVTRKFGGTGLGLTISRQLCSL 392 Query: 452 HGGQFLIRSKLREGVEVIAILPN 474 G + S+L +G +LP Sbjct: 393 MSGDIWVHSELGQGSTFSFVLPL 415 >gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1092 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 10/285 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + I +L+ A + AE K +FLA+MSHE+RTP+N Sbjct: 544 RLVRDKDSREVTIEGVARDITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMN 603 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G +++ + N ++ I RS + LL ++N+ILDLS+IEAG+ ++ Sbjct: 604 GVIGMVDLLSQTQL----NPEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHI 659 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 + + + + + +A +K+I++ KID + + DE + Q+I NL SNA+KFT Sbjct: 660 TEVKSVFDKVLNLFSQQANQKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTE 719 Query: 385 IGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G+V + + I+++D G GI+E + + F Q + A G GLGL Sbjct: 720 KEGKVLLHISKEIKDNLYRIAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLA 779 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I++ + + GGQ + S+ EG L V E E+ Sbjct: 780 ISKQLSSLMGGQIGVSSEPDEGSVFWFTL----VGEQASEAEIEA 820 >gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 470 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 156/352 (44%), Gaps = 14/352 (3%) Query: 129 PGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVALSTQ---AIMSMHV 184 + L+I A+ + + + + + A++ V Sbjct: 128 YFGGRFNQPVLTVGVPLVIKGRIEGAIFMHAPLTEMNKTIINIFLLMLLSGGVALIIGFV 187 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L + ++ L + L K N E+D++ + ++ E E+ Sbjct: 188 LISYTSSKISQPLKEMSLAVQQLAKGNFSARVQHREEDEIGELAKSFNVMAKE----LEQ 243 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHELR+PL +I G+ + I G + E +Y+ + + + + L Sbjct: 244 LEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPVEKACDYLKIVQKETRRMSRL 300 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I++ L+++++E+G++ L ++ + +++R +I + R EK++ + + V AD Sbjct: 301 IDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIAD 360 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + QV+ NL+ NA+KF+ G +H+ T +I+IKDNG GI+ + + F Sbjct: 361 KDKIEQVLSNLIDNAIKFSKEKGIIHI-FTETKDDKVFITIKDNGIGISPEDQEHIWDRF 419 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + + G GLGL I + I+ H + + SK+ G LP + Sbjct: 420 YKADKS--RGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469 >gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 949 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 8/270 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + + E +D +LE+ S+ +A+ N+AKS FLA+MSHE+RTP+N Sbjct: 256 RQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLANMAKSEFLANMSHEIRTPMN 315 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G ++ + KEY + S LL +IN+ILD S+IEAG+ +L Sbjct: 316 GVVGMISLLLETELTR----EQKEYAETVRNSAHSLLEIINDILDFSKIEAGKLDLEAID 371 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 L + + E ++ LRAQEK +E IDP + + D +RQ++LNL +NAVKFTA Sbjct: 372 FDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDPVRLRQIVLNLANNAVKFTA 431 Query: 385 IGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + V + + S+ D G G+A ++ +F Q + G GLG Sbjct: 432 QGSITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRNYGGTGLG 491 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 L I++ + G+ + S+ +G Sbjct: 492 LAISKKLAQMMKGRIGLESEEGKGSTFWFT 521 >gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 470 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 151/339 (44%), Gaps = 17/339 (5%) Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----- 195 + + + + +A ++ + ++S V I +++ Sbjct: 137 VLTVGVPLVINGRIEGAIFMHAPLTEMNKTIINIFILMLLSGGVALIIGFVLISYTSSKI 196 Query: 196 --ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 L + + K N E+D++ + ++ E E+ + F+ Sbjct: 197 SQPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNIMAKE----LEQLENMRKDFV 252 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A++SHELR+PL +I G+ + I G + E +Y+ + + + + LI++ L++++ Sbjct: 253 ANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQKETRRMSRLIDDFLEMTK 309 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 +E+G++ L ++ + +++R +I + R EK++ + + V D+ + QV+ Sbjct: 310 LESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIGDKDKIEQVLT 369 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL+ NA+KF+ G +H+ +I+IKDNG GI+ + + F + + Sbjct: 370 NLIDNAIKFSKEKGIIHI-FTEIKDDKVFITIKDNGIGISPEDQEHIWDRFYKADKS--R 426 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + I+ H + + S++ +G L Sbjct: 427 GKDGAGLGLYIVKRIINAHNEEIWVESEVGKGTAFTFTL 465 >gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1123 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 156/386 (40%), Gaps = 32/386 (8%) Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 + L Q + L + + + + L+ +AL Sbjct: 519 ERTAALQNTLAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKGHYRE 578 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 P+ A H ++ A + T + +FK V+ Sbjct: 579 -------LPISGLAELVARTQSHPEEVFSAEVALTKERIGQAVATAIFKKTVEQEPLACF 631 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276 L+ A+ D K+ F++++SHELRTPL ++LGF+ + +E Sbjct: 632 GSALLIRDITAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIKEKLET 681 Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 + ++ E K + + I + L +LIN++LD++++EAG+ E + Sbjct: 682 DVFPIISTEDRKLQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPLD 741 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + +++ +I+P L + D + QV++NL+SNAVKFT G Sbjct: 742 PSELLDWATNSTAGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINLISNAVKFT-ESG 800 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V V IS+ D G GIA + P V F Q + +G GLGLPI + Sbjct: 801 CVTCRVKQGHDG-VCISVIDTGIGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 859 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ +HGG+ + S+ +G I+P Sbjct: 860 IIDHHGGRIWVESEPGKGSVFSFIIP 885 >gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 375 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 12/267 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ C I L+ + + R++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 117 MEIEGRDCMVITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ + E +++G + + + L LI +ILDLS+IEAG E S I + Sbjct: 177 FSELLAS----ASSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDIN 232 Query: 330 DIVRECIIMLQLRAQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + ++R +E+ +++ ++ P + D + QVI N ++NA+KFT G Sbjct: 233 QLMSDLEQQFRMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDE-G 291 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + T+ G Y +KD G GI + ++PT+ F + ++G GLGL I Q+ Sbjct: 292 SITLGY-RTNEDGFYFYVKDTGSGIPKEKLPTIFDRFVKLEQ----EKKGTGLGLSICQT 346 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I++ GG+ + S++ +G LP Sbjct: 347 IVSKLGGKIGVDSEVGKGSTFWFTLPR 373 >gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2] gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2] Length = 854 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 132/272 (48%), Gaps = 17/272 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ++L + R AE N AKS FLA+MSHE+RTP+N ++G +E++ + Sbjct: 315 VTAAREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNL----T 370 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I SG+ LL +IN+ILD S+IEA R L L + E ++LQ RA+ Sbjct: 371 EEQRLFADTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRAR 430 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399 K +++ D L D +RQV+ NL+ NAVKFT G V V V + Sbjct: 431 AKGLDLMIDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTET-GHVLVRVVGIEAEPGSQ 489 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +I+++D G GIA + + F Q +G GLGL I Q ++ GG + Sbjct: 490 QLHITVEDTGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVD 549 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S+ +G L +P ++TQ+ Sbjct: 550 SEPGKGSCFGFRL-------ALPVAEEDATQH 574 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/273 (30%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ E E A+ + K A+E AKS FLA+MSHE+RTP+NAI+G S +I+ + Sbjct: 985 DITTEKENARQ-LEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQTDL--- 1040 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N +Y+ I S + LL +IN+ILD S+IEA + EL + +L D + ++ + Sbjct: 1041 -NRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHK 1099 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 Q+K +E+ I+P+L + D + Q+++NL +NA+KFT G + + Q Sbjct: 1100 TQQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDE-GEIIIKARAVEQHEQ 1158 Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ +KD G G+ ++ + SF Q + G GLGL I++++ G+ Sbjct: 1159 QVTIEFAVKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIW 1218 Query: 458 IRSKLREGVEVIAI--LPNTRVLNFIPEDNHES 488 + S EG + V + I + + +S Sbjct: 1219 VESSYGEGSTFLFTAKFAIAAVNSAIEKASSKS 1251 >gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli M605] gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15] gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86] gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli M605] Length = 918 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + P T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTP----TQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++Q+I NL+ NA+KFT G + V S I + +D G GI E + + Sbjct: 407 LRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQ 466 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S G + Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516 >gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] Length = 412 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL +I G++E + + + + E K ++ I + L Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--EDKELVKRFLKIIEEESARMTRL 239 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL ++E + L +++ ++Q A+E +++ + + V + Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECED--VVVRGN 297 Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + Q++LNL+ NAVK+T G V V + + + ++D GPGI + + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQSRIF 357 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ HGG+ + S++ +G + LP Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPKR 411 >gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1388 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 107/420 (25%), Positives = 170/420 (40%), Gaps = 24/420 (5%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 ++ + IG+ R ++V Q ++ L I L + Sbjct: 693 RRFGLGESLIGQAARTRRTIVVEQTPPDYITIGSSVGRAAPAALVVLPILFEDQALGVIE 752 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHL 207 +++ + F + FL + ++ I++ D L A + Sbjct: 753 LASFNPFTAVHHAFLDQLTETIGVNVNTIVANARTDALLEESQRLAGELRARSEELQSRQ 812 Query: 208 FKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257 + + D L + EV ++ R+ EE + KS FLA+MS Sbjct: 813 EDLQRSNDELEVKADLLAQQNHDIEVKNREIEQARQELEERARQLALASKYKSEFLANMS 872 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L + ++ G L EY IH +G LL LIN+ILDLS++EAG Sbjct: 873 HELRTPLNSLLILAGLLARNPKGNLT-AKQVEYAHVIHSAGSDLLQLINDILDLSKVEAG 931 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 + +L ++L +V + EK + + +I P + + D + Q++ NLL Sbjct: 932 KMDLHVEPVALAAVVDDLRATFTPVTTEKGLRLKVEIAPDVPGRLLTDRHRLAQILRNLL 991 Query: 377 SNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 SNAVKFT GRV +T+ G G ++ D G GIAE + + +F QG Sbjct: 992 SNAVKFTEQ-GRVELTITMMAPASGRPGGEHVLFAVTDTGIGIAEENLDRIFGAFQQGDG 1050 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPEDNHES 488 G GLGL I + + GG+ RS G LP PE ++ Sbjct: 1051 TTSRRYGGTGLGLSICREVATLLGGEIRARSVYGSGSTFTLDLPTNPPAELTSPEPPRDA 1110 >gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1287 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 24/299 (8%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 +L T + + +V++L + + +++AE AKS Sbjct: 577 ILGTFGFESVSSKRLINEEHVQLLQILGNILGDALIRNSFERDLLQAKEQAEAATQAKSE 636 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+NAI+G S + + + Y+ I + + LL +IN+ILD Sbjct: 637 FLANMSHEIRTPMNAIIGISHLALRSGL----DRRQHSYLTRIDGAARSLLGIINDILDF 692 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEA + EL +L D++ + +A+EK +++ ++DP S+ D + Q Sbjct: 693 SKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQLDPDTPLSLKGDSMRLSQ 752 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------------ISIKDNGPGI 412 V+ NL+SNA+KFT G + V+V + + S++D+G G+ Sbjct: 753 VLTNLISNAIKFT-SHGEIVVSVSPGTSNTAHEAIPECLPAKGYNQVCLMFSVRDSGQGM 811 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + + +F Q +I G GLGL I++ ++ GG ++S+ EG Sbjct: 812 DQDQASRLFDAFFQADSSITRRFGGTGLGLSISKQLVEMMGGSIQVQSQPGEGSTFSFT 870 >gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1179 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 17/274 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + + ++ AE + AK FLA+MSHE+RTP+N I+G +E+ M + Sbjct: 534 ISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEM----S 589 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S LL +IN+ILD S+IE+G+ EL + ++ L +RA Sbjct: 590 AEQREYLNMVKSSADALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAA 649 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRG 400 +K +E+ +D ++ + D +RQV+ NLL NA+KF+ G + + + TS Sbjct: 650 QKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFS-EHGAITLRMKLLMQTSDGL 708 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GI ++ + +F Q + G GLGL I+ ++A GG + Sbjct: 709 CVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVE 768 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 S++ G +P ++ ++ C Sbjct: 769 SQVGIGSVFGFT-------TTLPVALNQPSEISC 795 >gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 929 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 161/340 (47%), Gaps = 23/340 (6%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212 + P+ +S + LDI + G L L + ++ + + Sbjct: 194 RLMQDVTQPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQ 253 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I ++ + + +LE+ D +KRA+E KS FLA+MSHELRTPLN ++GF+ Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + N + K+Y+ I S +LL +IN+ILD S++EAG+ L D + Sbjct: 314 QMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSL 369 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390 E + +L A EK +E+ KID + + + D ++QV+ NL+ NAVKFT G V Sbjct: 370 DEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVS 429 Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + + ++D G GI+E + + +F Q +I G GLGL I Q + Sbjct: 430 VELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 489 Query: 449 MANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481 ++ GG+ + S+L +G LP ++ +N Sbjct: 490 VSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLPVSQPINTT 529 >gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 590 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + F+A++SHELRTPL I ++E + + ++ ++++ I+ + Sbjct: 359 QRLEEMRKEFVANVSHELRTPLTTIKSYAETLLDGALD--DSSVARQFLSVINDEADRMT 416 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L+LSR++ + I + ++ I + + ++K +E+ + L V+ Sbjct: 417 RLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPEDLPKVF 476 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD M QV N+LSNA+K+T GGR+ V + +SI+D G GI + ++P + Sbjct: 477 ADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQ-VQVSIRDTGIGIPKEDLPRIFE 535 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + G GLGL IA+ I+ H G+ + S+L +G EVI LP Sbjct: 536 RFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLPA 587 >gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 628 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 9/269 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+E + + +++R +A AKS FLA+MSHE+RTP+N ILG + +++ ++ PL Sbjct: 236 RDISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLNPL 295 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E + I+ G LL +IN+IL S+IE+G+ + + + +L V + ++ Sbjct: 296 ----QEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANI 351 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A EK I I KID S+ + +D ++Q+I NLLSNAVKF+ +V + + T G Sbjct: 352 ASEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGN 411 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S+KDNG G++E E + F Q + G GLGL I+ + GG+ Sbjct: 412 IVKVLFSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGKIK 471 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + S+ EG + L + F E+ Sbjct: 472 VESRKGEGSKFSFELEFEKGNEFQSEEQD 500 >gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 810 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 16/281 (5%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + S+ D + + + + R +AE N AKS+FLA MSH Sbjct: 245 WLRLRGKVAHDSHGDANRLLGSMTD-VTQRKRDEQALQVARDKAESANRAKSQFLAVMSH 303 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N ++G + ++ + +E Y+ I SG+ LLN+I+E+L S++EAG Sbjct: 304 EIRTPMNGVMGMAALLASTKL----DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGN 359 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL ++A ++ + + + ++ A+EK +E+ ID SL V DE ++QV++NLL Sbjct: 360 IELEQNAFNIGECLTSALQIISPMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLG 419 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---------QYISIKDNGPGIAEGEIPTVLTSFGQGS 428 NAVKFT G + + + ++++D G GI+ I ++ F Q Sbjct: 420 NAVKFTHA-GEIELRAKAENHEDPTTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQED 478 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 + G GLGL I++S++ GG I S EG Sbjct: 479 ASTTRRYGGTGLGLAISRSLLELMGGAIEIDSAPGEGSTFT 519 >gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 617 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 180/357 (50%), Gaps = 5/357 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 L + T + +A L + + F + P + + ++ Sbjct: 256 APLPISLVDPSTFRVMQANMAALALFGIDETEADGFDVREFFDEEDLPARL---DRLVLG 312 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + S + D+ + A++ E R + Sbjct: 313 GRAGAPVEFCLKRRDGAVIWALVSAAVVSFHGRRALLIGIQDVTVRHKEAEA-LREARDQ 371 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A + +KS FLA+MSHELRTPLNAI+GFSE +E E GP+ N Y+EY DIH SG HL Sbjct: 372 ATAASRSKSEFLANMSHELRTPLNAIIGFSEALERELFGPVGNPRYREYAEDIHDSGVHL 431 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+LIN+ILDLS+IEAG ++L E L IV +++ RAQ+ NI I ++ +V Sbjct: 432 LSLINDILDLSKIEAGHFKLHEDETDLDHIVAAATRIVRHRAQQANIAIECRLPQPPLAV 491 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 DE+ ++QV++NL+SNAVKF+ G + V T+ +G IS+ D G GIA +IP L Sbjct: 492 LVDERALKQVLINLVSNAVKFSPDGSLILVEANVTT-QGLRISVADKGVGIAPEDIPRAL 550 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 T F Q ++ A +G GLGLP+A+ + H G+ I S + G V LP +RV+ Sbjct: 551 TPFTQLDGSLSRAHEGTGLGLPLAKHLTELHDGKLFIESAVDVGTTVYVDLPLSRVV 607 Score = 46.0 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 59/227 (25%), Gaps = 14/227 (6%) Query: 29 SKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85 + + + S + I + A + + Sbjct: 32 ADPALEAGYLRASWTEAHSRLKALLIAIYVFVSWAAFDLVAMGFGWPFVLLTVARFAALG 91 Query: 86 NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145 + L KV + R ++ ++ + ++ S + Sbjct: 92 STLLALKVFRTPDN-------RSAFMICAGVTQAIVCIVAPLSLMLGGVQFAAALLSIVV 144 Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL----SFFT 201 ++ + + + + + T + + +L I G+L + + Sbjct: 145 ILFAFYVGVPSRLPVNLALSASLSLGFVAVTPFLTEVSLLTILEIGVLFMVVNAIGAELV 204 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L ++ L Q E + + + +++ + EE + Sbjct: 205 RSANRLRRTGFLTLMRQQELYEQLKREVEVRQEAEQAVRATEESFQS 251 >gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] Length = 646 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + ++ + + + + W + A ++G + + Sbjct: 140 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199 Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 WR + + L + + LV L SA + S L L V Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259 Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217 + P ++ + + S + + + Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E D R AE + K+ FLA++SHELRTPLNAI+GFS+V+ E Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L+ E +EY G I +SG+HLL+++N +LD+SRI G ++ + + ++R C Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +++L+A I + P+ ++ AD + RQ+++NL+SNAVKFT GGRV V V Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G I + D+G GI E ++P + F Q + +G GLGL + + + HGG Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 458 IRSKLREGVEVIAILPN 474 + S +G V LP Sbjct: 559 VESAPGKGTAVTVTLPL 575 Score = 41.8 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112 + +A P + +W + + A ++ L ++ + + +W L Sbjct: 39 FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G+ L L + + +++ S A + V + Sbjct: 99 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 158 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231 L A+ I + TA+ + + E E A Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202 Query: 232 KSLSDETRKRA 242 + +E R R Sbjct: 203 RMQDNEARDRL 213 >gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1258 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 168/360 (46%), Gaps = 41/360 (11%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + + +L + + M+ + + + ++++ E + E Sbjct: 686 ITITPPWWETTFFRISLLLLIMGFMVGGFRWRISIVENQKCQLEIQVVQRTKELSEKTEE 745 Query: 228 LEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L + + +++AE N AKS FLASMSHELRTPLNAILGF++++ + Sbjct: 746 LMQSHQELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHRSSTL 805 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P +++ + I+RSG +LL+LIN++LD+S+IEAG+ L E L ++ E + Sbjct: 806 PT---EHRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLFY 862 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG------------ 387 L+A+ K +++ + L + D K +RQVI+NL+SNA+KFT GG Sbjct: 863 LKAESKQLQLQVERSDHLPRYIRTDGKKLRQVIINLISNALKFTQDGGVSLYADKIASNT 922 Query: 388 --RV------HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 V + G + S+ D G G+A+ E+ + +F Q + Sbjct: 923 SGEVPPPSGRRLRGGKNPDGEDVNTEITTLHFSVADTGAGVAQEEMDKLFEAFSQTATGR 982 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S +G GLGLPI++ GG +RS++ +G + +++ + + TQ Sbjct: 983 ASQ-EGSGLGLPISRQFTQLMGGNIQVRSEVGKGTVFEVTI-RAQIVEAADSTSEQPTQQ 1040 >gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1129 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 20/304 (6%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 IT + + + + + I + + + AE+ A+ FLA++SHEL Sbjct: 407 VAITVSPIRGMDQQVVGSSSIERDITARRRREEELSKAKDEAEQATRAQGEFLANVSHEL 466 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAILG E+ E + PL ++Y+ S LL L+N+ILD SR+EAG +E Sbjct: 467 RTPMNAILGMLELTLQENLTPLK----RDYLQTAKDSADSLLLLVNDILDFSRLEAGHFE 522 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L SL ++ E + L LRA EK +E+ +ID + V D +RQ++ NL NA Sbjct: 523 LEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNLAGNA 582 Query: 380 VKFTAIG------------GRVHV-TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +KFT G G + + + S+ D G GIA + + F Q Sbjct: 583 IKFTEQGEVVVDVKLIEPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIFAPFAQ 642 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPED 484 + G GLGL I ++ G+ + S+ EG ILP + + Sbjct: 643 ADASTTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAEPEESVQGN 702 Query: 485 NHES 488 S Sbjct: 703 EKAS 706 >gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1245 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + + E ++ AE NL KS FLA+MSH Sbjct: 684 WLLSRGRVVEFTTDNQPKRMVGTHKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSH 743 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + ++ P ++Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 744 EIRTPMNAIIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGK 799 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL + L ++ + + L+AQEK +E+ + + D + QV++N+LS Sbjct: 800 LELERVSFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 859 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + ++ +F Q + Sbjct: 860 NAVKFT-QSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTR 918 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GG ++S++ G + Sbjct: 919 KYGGTGLGLSISKHLVSMMGGTMQVQSEMGVGSTFSFTI 957 >gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32] gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32] Length = 808 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 21/359 (5%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + E+ + +++ ++ + +L F + +++L I+ V+ Sbjct: 116 MVHQMGGSEFQLATLTVQSDLSMILNDFEDRVLLLLAFEAVKIFLLSLVCLTIVYRLVVK 175 Query: 187 ISLAGMLATAL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + F T + + L + I + ++ + Sbjct: 176 RLMTMSSQINHQQVEDNKPRFLTPTNSTYSDEISTLESSY--NQSIERIRQQYQELEKAK 233 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE N KS FLA+MSHE+RTP+N I+G S ++ M + KEY+ ++ S Sbjct: 234 DTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVDMLNTSSL 289 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL+LIN+ILD S+IEAGR EL + + ++ I + +++A++K ++ IDP + Sbjct: 290 TLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIP 349 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGI 412 V D +RQV+ NL+ NA+KFT G V +++ + D+G GI Sbjct: 350 TMVIGDGTQLRQVLNNLVGNAIKFT-EHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGI 408 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 AE + +V F Q + G GLGL I I+ G + + S + +G Sbjct: 409 AEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSIVGKGSTFYFT 467 >gi|225568760|ref|ZP_03777785.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM 15053] gi|225162259|gb|EEG74878.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM 15053] Length = 806 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 149/289 (51%), Gaps = 15/289 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++ + Q E I + K + +E ++AE AKS FL+ MSH++RTP+NA Sbjct: 373 LSRNIDEERRIQEET---IEKERRTKQILEEALEKAERTGQAKSDFLSRMSHDIRTPMNA 429 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +E+ M N E KEY+ I SG+ LL+L+NE+LD+S+IE+G +EL+E Sbjct: 430 IIGMTELAL---MNTGNEEKIKEYLKTIAGSGERLLSLVNEVLDVSKIESGTFELAEKEA 486 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385 L ++V E M ++ ++ + ++ + + V AD + Q+++N+L+NA K+T Sbjct: 487 DLCELVDEVAEMFRVTTEKMHQTFVVHVEKEIHARVLADAGRINQILVNVLANASKYTEE 546 Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG + +++ +++DNG G+ + + F + + S G GL Sbjct: 547 GGMLSLSLRELKKEENQVGTYQFTVEDNGIGMKPEYVEHIFEPFSRADDSRISKIAGTGL 606 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI---PEDNH 486 G+ I +++++ G + S+ +G + I L T+ P + H Sbjct: 607 GMTIVRNLVSMMDGDIQVESEYGKGSKFIITLYLTKCDASALTKPAETH 655 >gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 179/374 (47%), Gaps = 13/374 (3%) Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST 176 +GL W L+ +V P + + TL + L ++ F+ P++ + Sbjct: 321 LGLDW-LIAIVIPESDFMAQIYANIRTTLALCLGALGIATFLGILTSRWILQPILRLQTA 379 Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLS 235 ++ LD ++ LS + + + + + L ++ + Sbjct: 380 SNSLAAGQLDQAIEVKGIHELSSLGSAFNSMARQLQESFQALEDNNAKLDQRVQQRTAEL 439 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 +++AE N AKS F+A+MSHELRTPLN ILG+++V+E P ++ ++ + IH Sbjct: 440 KVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQQQVHIIH 496 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + G HLL +IN+ILDLS+IEAG+ +L + L ++ ++RA +K +E +D Sbjct: 497 KCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVD 556 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHV-TVGWTSGRGQYISIKDNGP 410 P L V DE+ +RQV+ NLLSNA+KFT G +V V V + R + D G Sbjct: 557 PGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRFGVTDTGV 616 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + +F Q + +G GLGL I++ ++ G Q ++S + +G + Sbjct: 617 GIAPAHLDQLFNAFVQVGD-RQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFSF 675 Query: 471 IL--PNTRVLNFIP 482 L P P Sbjct: 676 ELEVPLATEWELSP 689 >gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 629 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 13/286 (4%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + Q + L + + ++ R+ AEE N AKS FLA+MSHELR Sbjct: 244 RVLRDARFQHAATREIQRLNEGLEQRVRERTAELEQARQSAEEANRAKSVFLANMSHELR 303 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAILGF+ + P +E +G + R+G+HLL+LIN++LD+++IE+GR L Sbjct: 304 TPLNAILGFARLAGQ---APQATPDQREQLGFVERNGEHLLSLINDVLDMAKIESGRQTL 360 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 E + L + + + L+ RA+ K + + ++ L + +D + +RQ+++NL+SNAV Sbjct: 361 EEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEVAEDLPRHILSDGRKLRQILINLVSNAV 420 Query: 381 KFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 K+T GRV ++ S G +++ D G GI + V F Q Sbjct: 421 KYTDA-GRVVLSARRQSAEPSGGHDGLLLAVADTGRGIPVEDQDRVFEPFVQ--SGRVGT 477 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +G GLGLPI + + GG+ + S EG LP ++ Sbjct: 478 TEGTGLGLPITREFVELMGGEIGLESTSGEGSRFTVSLPLVPAVDE 523 >gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] Length = 2341 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1830 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1889 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + ++ EY+ I LL LIN Sbjct: 1890 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1945 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + ++ V D Sbjct: 1946 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 2005 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V T I S+ D G GI E + + Sbjct: 2006 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2064 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + + G GLGL I ++I+ GG + S G V L +V + Sbjct: 2065 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2124 Query: 480 FIPEDN 485 + + Sbjct: 2125 ASAKAS 2130 >gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] Length = 906 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 161/362 (44%), Gaps = 15/362 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 TLL + + T L+AL +S + L L T+ Sbjct: 148 TLLRGYRSLLTSLFLVGTGLIITALLALRMSRAISLPLQRVKAAVAQLKDGHLETRLPPL 207 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 LA + L +S + + + I E+ D RK Sbjct: 208 GSHEMDELASGINRMAEALLSAREELQQSIDQATEDVQQNLETI---EIQNIELDLARKE 264 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A E + KS FLA+MSHE+RTPLN ILGF+++++ + P ++Y+G I +S L Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGTIEKSADSL 320 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360 L +INEILD S+IEAG+ L +L D++ + + +L A K +E+ + S Sbjct: 321 LGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLS 380 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416 + D ++QV+ NL+SNA+KFT G + V IS++D G G+ + + Sbjct: 381 LVGDPLRLKQVLTNLISNAIKFTNE-GTIAVRAMVEDDNAERAQLRISVQDTGIGLTDQD 439 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + + +F Q ++ G GLGL I++ ++ GG+ + S EG E LP Sbjct: 440 LRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLSLPK 499 Query: 475 TR 476 R Sbjct: 500 AR 501 >gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1683 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 12/257 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I A+ E ++ +++ + AKS FLA+MSHE+RTP+NAI+G S + +G Sbjct: 919 RDITLDRQAEFALLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHL----ALGCE 974 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K Y+ ++++ + LL +IN+ILD S+IEAG+ ++ SL D + ++ L+ Sbjct: 975 LDRKPKNYVTKVYKAAESLLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLK 1034 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-------VTVG 394 A EKN+E+ I P + + D + Q+++NL NAVKFT G V V+ Sbjct: 1035 AGEKNLELLFDISPDVPVNLKGDPLRLNQILINLAGNAVKFTEQGQVVISVNVVTNVSTS 1094 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 S+KD+G G+ + + + SF Q + G GLGL I++ ++ G Sbjct: 1095 HCDDINLEFSVKDSGIGMDDEQQKKLFQSFSQADSSTTRKYGGTGLGLTISKKLVELMNG 1154 Query: 455 QFLIRSKLREGVEVIAI 471 Q + SK EG Sbjct: 1155 QIWLESKAGEGSCFSFT 1171 >gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 823 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 2/302 (0%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L ++ +A+ + +S V L ++ ++ E + Sbjct: 258 ILGVLILSAMHKLDDTVRRIVESTVGTLGSALNNAMTYKTVQQQALQLEQANMELLEADH 317 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S F+A+MSHELRTPLN+I+GFS ++ G L T Y I+R+G+HLLNLIN+ Sbjct: 318 LRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNL-VATDLSYAEKINRNGKHLLNLIND 376 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLS+IEAGR EL + + +E + ML+ +A E+N+ + + + D + Sbjct: 377 ILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIPMFETDGEK 436 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +++V++NLL NA+KFT GG V V + SG I + D+G GI + ++ T+ F Q Sbjct: 437 LKRVLINLLGNAIKFTHKGG-VKVRLISQSGHRLNIEVNDSGIGIPQDKLETIFQPFRQV 495 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + G GLGL I +SI+ G+ + SK EG LP P E Sbjct: 496 DSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLPLGGDAARQPAPAVE 555 Query: 488 ST 489 Sbjct: 556 EP 557 >gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 15/312 (4%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 A + +I A A+ +I + + E + L Sbjct: 327 MLAFNAKFRDNILFAISTYLAVELLVFILLRMGTG-----QFRREVLERTVALHKNNRQL 381 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ AEE N AKSRFLA+MSHE+RTP+NAI+G +++++ + + ++ Sbjct: 382 ALAKREAEEANAAKSRFLATMSHEIRTPMNAIVGMADLLKDTPL----DREQARFVATFQ 437 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+G L++L+N+ILDLS++++G+ + + ++ + M+ +A+ K +++ Sbjct: 438 RAGDQLMDLLNDILDLSKVQSGQIHIEVVETDIRTLLDDLSAMMVAKARVKQVDLLFNPH 497 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGP 410 P+L V D +RQV++NLL NA+KFT G V + +TS I D G Sbjct: 498 PNLPARVGVDPLRLRQVMINLLGNAIKFT-ANGEVELRAYFTSSSEVPYGLGFEISDTGI 556 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + + +F Q +++ G GLGL I++ ++A GG + S + +G Sbjct: 557 GIDETRLKAIFEAFTQADLSVTRQFGGTGLGLTISRHLVALMGGDIQVESTIGQGSRFWF 616 Query: 471 ILPNTRVLNFIP 482 +P + P Sbjct: 617 EIPIDEPVQRQP 628 >gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 470 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 156/352 (44%), Gaps = 14/352 (3%) Query: 129 PGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVALSTQ---AIMSMHV 184 + L+I A+ + + + + + A++ V Sbjct: 128 YFGGRFNQPVLTVGVPLVIKGRIEGAIFMHAPLTEMNKTIINIFLLMLLSVGVALIIGFV 187 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L + ++ L + L K N E+D++ + ++ E E+ Sbjct: 188 LISYTSSKISQPLKEMSLAVQQLAKGNFSARVQHKEEDEIGELAKSFNVMAKE----LEQ 243 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHELR+PL +I G+ + I G + E +Y+ + + + + L Sbjct: 244 LEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPVEKACDYLKIVQKETRRMSRL 300 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I++ L+++++E+G++ L ++ + +++R +I + R EK++ + + V AD Sbjct: 301 IDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIAD 360 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + QV+ NL+ NA+KF+ G +H+ T +I+IKDNG GI+ + + F Sbjct: 361 KDKIEQVLSNLIDNAIKFSKEKGIIHI-FTETKDDKVFITIKDNGIGISPEDQEHIWDRF 419 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + + G GLGL I + I+ H + + SK+ G LP + Sbjct: 420 YKADKS--RGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469 >gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 611 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 145/267 (54%), Gaps = 23/267 (8%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +L E++ + +++AE N AKS F+A+MSHELRTPLNAILGFS++++ Sbjct: 112 QELEQEVKRQTEELEIAKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKR---SS 168 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ KE I I RSG +LL LIN ILDL++IEAG+ L+ L ++E +L L Sbjct: 169 TLSQEEKENINIIGRSGDYLLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHL 228 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------ 394 +A K +++ D + + DE +RQV++NL++NA+KFT+ GG V V V Sbjct: 229 KANNKGLKLEINHDQDVPQYINTDETKLRQVLINLINNAIKFTSEGG-VFVQVRNQPSDI 287 Query: 395 -----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ I+++D G GIA GE+ + +F Q + K + +G GLGL Sbjct: 288 KDSNLNNDSKSLTNNDYINITVQDTGVGIAAGELDKLFEAFAQTE-SGKKSSEGTGLGLA 346 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470 I++ + GG + +++ G Sbjct: 347 ISRKFVQLMGGDITVTTEVESGTTFSF 373 >gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 775 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 8/269 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + I ++ + + + E+ +KRA++ K+ FLA+MSHELRTPLN + Sbjct: 251 EEMQNDIDQATSDLRETMEQFEIQNVELAIAKKRAQDAARIKTEFLANMSHELRTPLNGV 310 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GF+ +T+ EY+ I RS HLLN+IN+ILD SR+EA + L Sbjct: 311 IGFT----RQTLKTPLTIQQTEYLYIIERSANHLLNIINDILDFSRLEADKLVLENVPFL 366 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L D + E +++L L A+ KNI++ +DP + + V D ++Q+ N++ NA+KFT G Sbjct: 367 LQDTIDEVMVLLTLSAKSKNIQLTHHVDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQG 426 Query: 387 G-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + + + I++ D G GI+ + P + +F Q + +I G GLGL Sbjct: 427 SVEIKINLLQQKHHKINLEITVSDTGIGISPEQQPHLFQAFHQANASISRHYGGTGLGLV 486 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I + ++ GG S+ ++G L Sbjct: 487 ITRKLIQEMGGNISFTSEPKKGSVFRFDL 515 >gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 102/391 (26%), Positives = 174/391 (44%), Gaps = 6/391 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R + V G ++ L +TP L +S I LSI+ N + Sbjct: 386 RNIVAVPIHYEGYVRGVIELASLTAYTPNDLAFLESVMHNIGLSINTSENRRRVQELLEE 445 Query: 167 FFPVVVALSTQA--IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + +++ + A L + L ++N ++ +D Sbjct: 446 TQAQSEELQVQHGELENINTELEAQAQKLQASEEELRVQQEELQQANQELEERSRLLEDR 505 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + E KS FLA+MSHELRTPLN+IL S ++ L++ Sbjct: 506 NQVIVERNLEIQKKAEELEISTKYKSEFLANMSHELRTPLNSILLLSRLMAENNEKNLSD 565 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E I SG+ LLNLI+EILDLS+IEAG+ +L + + + +I + + A+ Sbjct: 566 DQI-ESAQVIQSSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDMEALFGPIAR 624 Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 EKN+ + + + + + + D+ + Q++ NLLSNA+KFTA G + VT Sbjct: 625 EKNLALNVQVMSDAPALIETDKMRLEQILKNLLSNALKFTAKGAVTLQVTAVAQDPSIVR 684 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +++D G GI + + +F Q + + G GLGL I++ + GG+ + S+ Sbjct: 685 FAVRDTGIGIPVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLGGEIRLESEP 744 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G E + +P R + E+TQ + Sbjct: 745 GHGSEFVVTIPL-RPQENREQPVQEATQQQA 774 >gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1022 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 92/436 (21%), Positives = 158/436 (36%), Gaps = 19/436 (4%) Query: 43 ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102 S + +VL A++ + TL L + + Sbjct: 307 RSRLAATGWTIAYVLSWADVAA--GIGVQAGALAASTLVAIVVMWLLLVRFHRRVLVPVY 364 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 + + + + + + S L L + + L Sbjct: 365 ARSA--RVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDVLAQMLVLHGGDHHALAAQ 422 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + V M ++ + Y + + + + Sbjct: 423 ALAQYDAFVANGGAGRTMMTELVLDAHGDAPLHLEVIAHSARYQGEDVLIAVFADTTAQR 482 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L+ + +E + A+ N AKS FLA+ SHE+RTPLN ILG E++E + Sbjct: 483 RLVHQ-------LEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERTAL--- 532 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + + + S + LL ++++ILD S+IEAG + +I ++ + Sbjct: 533 -DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFDVIAVIERELAAFAPV 591 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400 A+ K + +F ID S + + D + QV+ NLL NA+KFT G V V VG Sbjct: 592 ARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTGEGRIVARVAVGHDVRGK 651 Query: 401 QYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I+I +D G GI + + F Q +I G GLGL + ++A GG + Sbjct: 652 PEIAIGIEDTGIGIDPAQQNRLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISV 711 Query: 459 RSKLREGVEVIAILPN 474 S G LP Sbjct: 712 HSAPGVGSLFTVRLPL 727 >gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 793 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 12/296 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + ++ + ELE A + + ++ A+ + +KSRFLA++SHE+ Sbjct: 238 ANLKRNREDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEI 297 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N +LG ++ + +EY I SG+ L+ +IN++LD SRIE+G+ + Sbjct: 298 RTPMNGVLGMVSLLLETDL----QAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLK 353 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 + + + ++ E + RA++K + + + + + D +RQV+ NLL NA Sbjct: 354 MEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNA 413 Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT G + +TV G +S + D G GI + +P + F Q + Sbjct: 414 VKFTLK-GTITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFG 472 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL---NFIPEDNHEST 489 G GLGL I + ++ GG S+ G + + V PE +HE+ Sbjct: 473 GTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFTVALSVVPDTGEPEPEPSHEAA 528 >gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1141 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 10/248 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + AE N AKS+FLA+MSHE+RTPLN I+G +E+ + M ++ Sbjct: 571 RKRAEALHREKLTAEAANRAKSQFLANMSHEIRTPLNGIIGMTELAMMRDMDS----KHR 626 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I LL +IN+ILD S+IEA +L E + +V + RA++K + Sbjct: 627 NILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISFDPASVVENVVKAFVHRAEQKGL 686 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYI 403 I ++ + V D +RQ+++NL+ NAVKFT G + + Sbjct: 687 GITVSMERDIPDGVIGDPGRLRQILINLVGNAVKFTQK-GEIGIEARVAEDLDKRIKLRF 745 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++KD G GI + + T+ SF Q + G GLG I++ + GG+ + S++ Sbjct: 746 AVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGTGLGTTISKHLAELMGGEIGVESEVG 805 Query: 464 EGVEVIAI 471 G Sbjct: 806 TGSIFWFT 813 >gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 765 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 28/347 (8%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI----- 203 ++ A + LPY P+ T ++ + A + I Sbjct: 275 VAREAFLSLGLPYDNLHLREPIF----TTFTLAGEKYNAMFAPFTGAEWPWVIGIYMPED 330 Query: 204 ----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + ++ +++ A LI L VA LS R+ AE + AKS+FLA MSHE Sbjct: 331 DYLGSIKANRTVNILIALVAVVIALIIGLLVANKLSR-AREMAESADEAKSQFLARMSHE 389 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NA+LG E++ ++ N + Y+ +G+HL L+ ++LDLSR E+GR+ Sbjct: 390 IRTPMNAMLGAGELLAETSL----NGDQRRYVSIYQSAGEHLRELVRDVLDLSRFESGRF 445 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 L E+ SL + + + L A+ K +++ +DP + D +RQV++NLL N Sbjct: 446 RLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVDPDTPDRLVGDPTALRQVLVNLLGN 505 Query: 379 AVKFTAIG----GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 ++KFT G G V G + +++D G GI + + F Q + Sbjct: 506 SIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQDTGIGIPVDKQEVIFERFSQADGST 565 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTR 476 G GLGL I ++++ GG + S+ EG LP + Sbjct: 566 SRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTTLTFTVRLPLDQ 612 >gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] Length = 906 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T + Sbjct: 489 ITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 544 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + Y + + + LL LINEILDLS+IEAG E + + + L + +E L+ R Sbjct: 545 EERQNYYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCP 604 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 E +E+ + +V D+ + QVI NL+ NA KFT G V G G Sbjct: 605 E-GVELVYEASDEEITVEGDKNRIFQVISNLIGNAFKFTTRGS---VGYGYRRKGNEIEF 660 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I ++I+ GG + S++ Sbjct: 661 YVSDTGIGIQTDKLAKVFERFVKV----NTFAQGTGLGLSICKTIIERLGGTISVCSEVG 716 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP + E+ + ++ Sbjct: 717 KGTTFTFTLPLAKDKRETAEEQNSVSE 743 >gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 714 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 10/280 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 27 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 86 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LL +IN+ILD S++EAG Sbjct: 87 HELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIINDILDFSKLEAG 142 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L +++ E + + A EK +EI KIDP + V D ++QV+ NL+ Sbjct: 143 KLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLV 202 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 N++KFT G + V+V + R I ++D G GI+E + + +F Q +I Sbjct: 203 GNSIKFTER-GNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASIS 261 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q ++++ GG+ + S+L +G L Sbjct: 262 RRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 301 >gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 499 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 3/253 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + R AE+ + AKS F+A++SHEL+TPLN+I+GFS+++ ++ G L Sbjct: 224 RDITERQRAEDALLKVRI-AEDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKL 282 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E YI +I SG+HLL I++ILDLS+IEAG+ L I ++ + + R Sbjct: 283 S-ERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFEFTKIFKDIEKVFRPR 341 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 K + + ++D + S +AD+ +Q++ NL+SNAVKFT G + V+ G Sbjct: 342 VSGKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEGSITVSAAKI-GNMVR 400 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I +KD G GI+ ++ + F Q K + GLGL + + + HGG S Sbjct: 401 ICVKDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKRFVEMHGGNIQAESVP 460 Query: 463 REGVEVIAILPNT 475 EG I LP Sbjct: 461 GEGSSFIIELPLK 473 >gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 502 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 133/262 (50%), Gaps = 10/262 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 K + ++ AE N AKS FLA+MSHE+RTPLN I+G +++ T+ E KE + Sbjct: 10 KEELFKLKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTDL----TLSTNLTEEQKENL 65 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + LL+LIN ILDLS+IEA + + ++ +++ I +A EK I++ Sbjct: 66 SIVKSCAHSLLSLINNILDLSKIEAEKVLIENVNFNIQVLIKNVIYTNLPKANEKYIQLH 125 Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIK 406 ID ++ V D + QV+ NL+SNAVKFT G V + V + ++ Sbjct: 126 YTIDENIPQVLVGDVYRLEQVLNNLVSNAVKFT-ESGFVIIKVRKINKSKNEYEIQFVVE 184 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+ E+ + SF Q +I G GLGL I++ ++ GG + S+ G Sbjct: 185 DVGIGISRDEMQHLFKSFSQVDGSITRKYGGTGLGLSISKKLVELMGGNIEVESEKGVGS 244 Query: 467 EVIAILPNTRVLNFIPEDNHES 488 + + + ++ I E +H+ Sbjct: 245 KFYFAIKLDKAMDDIGELDHQK 266 >gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1450 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 9/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I ++ ++ +++AEE AKS FLA+MSHE+RTP+NAI+G + + + Sbjct: 678 EDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPL--- 734 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++YI +HRS + LL ++N+ILD S+IEAGR ++ + L D++ ++ L+ Sbjct: 735 -DARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLK 793 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++K +E+ + P + + + D + Q++ NL +NAVKFT GG + + V + Sbjct: 794 AEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGAD 853 Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G G+ + + SF Q ++ G GLGL I + + GG+ Sbjct: 854 WVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEIG 913 Query: 458 IRSKLREGVEVIAI 471 + S+ G Sbjct: 914 VESEPGAGTCFRFS 927 >gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1131 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 163/391 (41%), Gaps = 34/391 (8%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 +L L P + + K +A++I++ A+ + + Sbjct: 331 LIGVLELASFRILEPPVMKLLKRLMETLAVAINSSQTHEQVRALL------------ERV 378 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + L L +L S ++ Q E + AEL + R Sbjct: 379 QQQNELVAEQQEELRQTNDSLLRQAENLQASEEELRVQQEELRQINAELVERNEAVEIAR 438 Query: 240 -------KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + E + KS FLA+MSHELRTPLN++L ++++ L EY Sbjct: 439 QSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLT-AKQIEYAT 497 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IHRSG LL LIN+ILDL++IEAG + ++ + IVR+ + + A+EK +++ Sbjct: 498 IIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLIT 557 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------------WTSG 398 K+ S+ + D + Q++ NLLSNA KFT GR+ +++ Sbjct: 558 KLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRKEK 617 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++ D G GI + + +F Q + G GLGL I++ ++ GG+ + Sbjct: 618 SLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEITL 677 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S+ +G LP + + P T Sbjct: 678 HSEEGKGSTFTLWLPLSLSVTPQPGTTPPET 708 >gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH 1] Length = 1739 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 22/287 (7%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + V E+ +RA E + +KS FLA+MSHE+RTP+ AILG++E+++ + + Sbjct: 1340 TQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDT 1395 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ I R+G +LL++IN+ILDLS+IEAG+ ++ ++ + ++++RA+E Sbjct: 1396 EGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKE 1455 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 +E+ + + + + +D K ++QV++NL+ NA+KFT G V + V S I Sbjct: 1456 AGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPE-GNVRLVVRMESEPIRLCI 1514 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + F QG ++ G GLGL I++ + GG +S++ Sbjct: 1515 DVIDTGIGITPEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVG 1574 Query: 464 EGVEVIAIL---------------PNTRVLNFIPEDNHESTQYKCYA 495 G + P +++++ + + + CYA Sbjct: 1575 VGSTFTLSVFPGDLTGVAMVDHSQPVSKLVDDLENSSTTPIKLNCYA 1621 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 22/261 (8%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ + + ++ AE N AKS FLASMSHE+RTP+N I+G +E+ + Sbjct: 436 ITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTEL----ALMQEPK 491 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ + +S LL++IN+ILDLS+IEAGR EL + L D++ +++ A+ Sbjct: 492 AKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAE 551 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 K + IDP + + DE +RQ+ +NL+ NA+K+T G+V V VG GRG Sbjct: 552 RKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEA-GQVSVRVGVEDGRGAQD 610 Query: 402 ------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 S+KD G GI + ++ + F G A + G GLGL I + ++ Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTG--ARSAKYDGTGLGLAITKRLV 668 Query: 450 ANHGGQFLIRSKLREGVEVIA 470 GG+ ++S+L G Sbjct: 669 ELMGGRITVQSELGRGSTFSF 689 >gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 754 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 2/283 (0%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G I Y + + + E+ +L + + + + + K Sbjct: 470 GSSIPVELSSRIIEYEGKTAILALARDITERKRAERKLNEYANELAKANEELKSLDKMKD 529 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FL+++SHEL+TPL +I G+S +I ET+G LN+E K+ + I R+ + L L++ ++ Sbjct: 530 EFLSNVSHELKTPLTSIKGYSNIIYEETLGKLNDE-QKKTMNTIVRNSERLRRLVDSLIY 588 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +S +AG+ E S + + ++ + I +K + + + + ++ + D+ + Sbjct: 589 MSMSQAGKIEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIPQINGDKAKLTD 648 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NLL NA KFT+ GG + V + +I + D G GI E IP + F Q + Sbjct: 649 MLTNLLDNATKFTSSGGEITVEA-FEEDEHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSS 707 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I+ G GLGL I + I+ H G I S +G V LP Sbjct: 708 IRRKYGGTGLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750 >gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] Length = 646 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 182/437 (41%), Gaps = 9/437 (2%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + ++ + + + + W + A ++G + + Sbjct: 140 TIAASVIAVVGAFAIALSGYLPVGALALDWPNAIVMPVFAVTAIGHIAAQAMEHMRREGE 199 Query: 106 WRIWLLVGQIAIGLCWTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 WR + + L + + LV L SA + S L L V Sbjct: 200 WRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEASGSAARFVGAEASRLRGHGLLDRVH 259 Query: 165 LSFFPVVVALSTQAIMSMHVLDI---SLAGMLATALSFFTYITYHLFKSNVKILSC---- 217 + P ++ + + S + + + Sbjct: 260 IGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDGSRTIFAEMRAHRIEAGLAGANGST 319 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E D R AE + K+ FLA++SHELRTPLNAI+GFS+V+ E Sbjct: 320 VVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGE 379 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L+ E +EY G I +SG+HLL+++N +LD+SRI G ++ + + ++R C Sbjct: 380 GAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCD 439 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +++L+A I + P+ ++ AD + RQ+++NL+SNAVKFT GGRV V V Sbjct: 440 LMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRR-G 498 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G I + D+G GI E ++P + F Q + +G GLGL + + + HGG Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 458 IRSKLREGVEVIAILPN 474 + S +G V LP Sbjct: 559 VESAPGKGTAVTVTLPL 575 Score = 41.8 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 18/191 (9%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS-LGKKVMNSDIKIGEVYVWRIWLLV 112 + +A P + +W + + A ++ L ++ + + +W L Sbjct: 39 FLISRLATGAVMMAGLPPYLVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALS 98 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G+ L L + + +++ S A + V + Sbjct: 99 SLGLTGIVVCLAALTGGASSAAAIWLVAVPLEAMVSGSRRATIAASVIAVVGAFAIALSG 158 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VA 231 L A+ I + TA+ + + E E A Sbjct: 159 YLPVGALALDWPNAIVMPVFAVTAIGHIAAQA----------------MEHMRREGEWRA 202 Query: 232 KSLSDETRKRA 242 + +E R R Sbjct: 203 RMQDNEARDRL 213 >gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116] Length = 641 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 13/330 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213 F++ F ++ L + + L++ + + + F V Sbjct: 151 FLVIAEAIKIFLLILGVLWVTFRLMVKPLELLSGAVSDFSGGHVPSKVTLPKRWFFDEVS 210 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L + + + + + ++ R +AE N KS FLA+MSHE+RTP+N I+G + + Sbjct: 211 LLERKY--NRSVERVSEHQLEIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + +E K+++ I+ S L+ +I++ILD S+IEAG+ EL + +L+D++ Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLH 324 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR---V 389 E + ++AQ+K +++ IDP L V D ++QV+ NLLSNAVKFT G V Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMV 384 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + T + + D+G GIA+ TV F Q + G GLGL I S++ Sbjct: 385 SLVSRKTDIASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICNSLV 444 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG+ + S+ G +P V + Sbjct: 445 EVMGGEIRLTSEPGLGSYFEFTIPLNIVCD 474 >gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01] gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01] Length = 641 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 15/331 (4%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF---TYITYHLFKSNVK 213 F++ F V+ L + + L++ + + + F V Sbjct: 151 FLVIAEAIKIFLLVLGVLWVTFRLMVKPLELLSGAVSDFSGGHVPSKVTLPKRWFFDEVS 210 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L + + ++ R +AE N KS FLA+MSHE+RTP+N I+G + + Sbjct: 211 LLERKYNRSVDRVSEHQL--EIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASL 268 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + +E K+++ I+ S L+ +I++ILD S+IEAG+ EL + +L+D++ Sbjct: 269 LGDTKL----DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLH 324 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + ++AQ+K +++ IDP L V D ++QV+ NLLSNAVKFT G V + Sbjct: 325 EVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTER-GHVKLM 383 Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V S G + + D+G GIA+ TV F Q + G GLGL I S+ Sbjct: 384 VSQVSREADVAGVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICSSL 443 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + GG+ + S+ G +P V + Sbjct: 444 VEVMGGEIRLTSEPGLGSYFEFTIPLNIVSD 474 >gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae] Length = 2341 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1830 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1889 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + ++ EY+ I LL LIN Sbjct: 1890 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1945 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + ++ V D Sbjct: 1946 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 2005 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V T I S+ D G GI E + + Sbjct: 2006 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2064 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + + G GLGL I ++I+ GG + S G V L +V + Sbjct: 2065 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2124 Query: 480 FIPEDN 485 + + Sbjct: 2125 ASAKAS 2130 >gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 760 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 10/309 (3%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 H++ ++ +A S + + + + +D E + + ++ RK A Sbjct: 174 HMIHQRMSDAIAGMASRRDRLPWFASREFRALNFSVGVLEDTFEERDEREFALEDARKAA 233 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHE+RTP+N ++G +E+I + ++ K Y I +SG LL Sbjct: 234 DIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DDDQKMYAETISKSGSALL 289 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN+IL+ S+IEAG+ EL + +L + + + +L +A EKN+E+ + DP L + Sbjct: 290 TIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPGLPEFF 349 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIP 418 D +RQ++ N+ NAVKFT+ G V++ V + G IS+KD G GI ++ Sbjct: 350 EGDVGRIRQILTNIAGNAVKFTSA-GYVYIEVSGHTAGGYSDLRISVKDTGTGIPADQLN 408 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RV 477 ++ +F Q A +G GLGL I+ ++ GG + S L EG LP R Sbjct: 409 SIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEGSTFTVELPLKVRE 468 Query: 478 LNFIPEDNH 486 P + Sbjct: 469 HQRQPRVDE 477 >gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40] Length = 2326 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1815 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1874 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + ++ EY+ I LL LIN Sbjct: 1875 KAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLIN 1930 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + ++ V D Sbjct: 1931 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVLGD 1990 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V T I S+ D G GI E + + Sbjct: 1991 PVRLHQIFMNLLSNSYKFTPK-GSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRL 2049 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + + G GLGL I ++I+ GG + S G V L +V + Sbjct: 2050 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKVKD 2109 Query: 480 FIPEDN 485 + + Sbjct: 2110 ASAKAS 2115 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 12/312 (3%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + ++ I+ L +++ I + A+ + R Sbjct: 345 RGDAIGKTIELSALDRDGREFPISLSLSAVSLQNRWHAVGIVRDITRQKDAEEKIVKARD 404 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE N AKS FLA+MSHE+RTP+N I+G +++E ++ +Y+ S + Sbjct: 405 EAEAANRAKSEFLANMSHEIRTPINGIMGMMQLLEATSLDV----EQAQYVQMGLTSARR 460 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+++ILDLSRIEAG+ E+ + + + + + +EKNI + +DP L Sbjct: 461 LTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLPE 520 Query: 361 VW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEG 415 + DE ++Q++ NL+ NA+KFT GRV V +++ D G G+ Sbjct: 521 ILLGDETRLQQILFNLVGNALKFTEQ-GRVQVNWHLMKRRERDIQVLLTVSDTGIGMTPH 579 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q A QG GLGL I + ++ G+ + S G +LP Sbjct: 580 RAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLPLK 639 Query: 476 RVLNFIPEDNHE 487 + PE + Sbjct: 640 --VPEQPEKEQQ 649 >gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima] Length = 412 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 119/235 (50%), Gaps = 7/235 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL +I G++E + + + N E K ++ I + L Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL +IE + L +++ ++Q A+E +++ + + V + Sbjct: 240 INDLLDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECED--VVVRGN 297 Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + Q++LNL+ NAVK+T G V V + + + ++D GPGI + + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRIF 357 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ HGG+ + S++ +G + +LP R Sbjct: 358 EKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPKRR 412 >gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] Length = 871 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 27/291 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +L+ +++ E + A+ N +KS FLA+MSHE+RTP+NA++G ++++ + P Sbjct: 276 RDITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKLDP- 334 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ I S LL LIN+ILD S+IEA R EL SL + + + Sbjct: 335 ---DQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFK 391 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393 A EK +E+ + I P L + D +RQV+ NL+ NA+KFT GG Sbjct: 392 ASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERA 451 Query: 394 --------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D+G GI + VL F Q + G G Sbjct: 452 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 511 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 LGL I++ ++ GG+ ++S++ G L +P + + + Sbjct: 512 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEE 562 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 141/271 (52%), Gaps = 2/271 (0%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + +L E + A+ ++ K A + +KS FLA+MSHELRTP Sbjct: 551 SRNWSSEEIGLLKIVGEIVAISLARHEAEVAQEKAAKAAFAASKSKSEFLANMSHELRTP 610 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L AILG SE + E GPL + +++ + I +SGQHLL LIN++LDLS+IE+G+ EL Sbjct: 611 LTAILGLSEALRDEVFGPLTAKQHQK-LATIEQSGQHLLELINDVLDLSKIESGKMELHL 669 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S + + + ++ +A +K I++ + P + V DE+ MRQ+++NLLSNAVKFT Sbjct: 670 SNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLINLLSNAVKFT 729 Query: 384 AIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V + V + D G GIA I + F Q + G GLGL Sbjct: 730 PESGAVWIEVKGDLEHETLQFIVADTGIGIAPENIGKLFQPFVQVDSSFTRRYAGTGLGL 789 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + ++ HGG + S+L G LP Sbjct: 790 ALVRQVIELHGGSVSLESELGSGSRFTVSLP 820 >gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4] gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 935 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + L + + E I ++ AQ K +E+ I P++ V D Sbjct: 355 DILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + + + + D G GI + + + Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526 >gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1051 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205 +A +I A + L + V +S ++V T ++ ++ L + ++ Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE E + AKS FLA+MSH Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ +A+EK IE+ I P+ + D+ +RQVI+N +S Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + +T ++ I S++D+G GI E + + F Q + Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG + S+ G L Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618 >gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum] Length = 1361 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 13/267 (4%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 ++ +++I L+ + ++ AE + AKS F+A+MSHE+RTP+N I+G + Sbjct: 706 LKSIINEMIYNLKQTTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIG----MTD 761 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 T+ +EY+ + S LL +IN+ILD S+IEAGR EL ++ SL + + + + Sbjct: 762 LTLDTDLTAEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTL 821 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + RA +K +E+ I P ++ + D +RQ++ NL+ NA+KFTA G V + V Sbjct: 822 KTMAWRAHQKGLELVCDIAPDVADILVGDPGRLRQIVTNLVGNAIKFTAE-GEVILAVDI 880 Query: 396 TSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 R + ++ D G GI ++ + +F Q +I G GLGL I+ ++ Sbjct: 881 DERRSNNVIVIHFTVTDTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVE 940 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNT 475 GG+ S G + P + Sbjct: 941 LMGGKLRAESTPGLGSKFEFTAVFPIS 967 >gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1847 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 139/297 (46%), Gaps = 10/297 (3%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244 + + ++ + L +SNV++ + AE ++ LE S + + EE Sbjct: 1385 VGFVLNMISSNMRMEGLLLELKRSNVELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1444 Query: 245 -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + KS FLA+MSHELRTPLN++L S+++ G L E K + ++ SG Sbjct: 1445 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVK-FASTVYTSGH 1503 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LINEILDLS+IEAG+ + L + + + A+ K + ++ P L Sbjct: 1504 ELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQVRMGPDLP 1563 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D + Q++ NL+SNA KFT G V + VG +G +++D G GIA + Sbjct: 1564 ERIHTDPTRLLQILKNLISNAFKFTER-GEVVLDVGPAAGGALAFAVRDTGIGIAADKQK 1622 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q G GLGL I++ I GG + S G +LP Sbjct: 1623 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLPAR 1679 >gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] Length = 914 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 92/420 (21%), Positives = 173/420 (41%), Gaps = 23/420 (5%) Query: 63 GTWFTQNPIFPMWSL-ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121 G W + ++ + + + E+ + L+ + + + Sbjct: 230 GFLVKWLADDGGWVAQGIYVLMFSHCLIAIQFSRHFLHTREL--FPRLDLLLRCTLLAAF 287 Query: 122 TLLT---LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 + +++ +W+ + + L+ + + + Y V+ + A Sbjct: 288 GSMISGLVLDVQSWSILASITVIIVSAGLLLAGAFVWRRGVRYGVYYTL-----AWGVLL 342 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + V SL L F+ + + L E ++ E Sbjct: 343 ASFILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSR----EA 398 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 +RA EN AKSRFLA MSHE+RTPLN +LG +++ + + + + Y+ I SG Sbjct: 399 AERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQQFYLDTISSSG 454 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L+ +IN+ILD +RI +G+ L + L ++ E I + +A EK + + ++P + Sbjct: 455 NSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGV 514 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG--QYISIKDNGPGIAE 414 + D ++Q+++NLLSNA+KFT G V V+ T + D+G G+ + Sbjct: 515 PRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFCVSDSGIGMRQ 574 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + SF QG + G GLGL I++ ++ G ++S G +P Sbjct: 575 EVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGRGSRFCFEIPL 634 >gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 921 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 24/341 (7%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL--------SFFTYITYHLFKSNV 212 + P+ +S + LDI + G L L + ++ + + Sbjct: 194 RLMQDVTRPISHMVSVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHVEMQQ 253 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I ++ + + +LE+ D +KRA+E KS FLA+MSHELRTPLN +LGF+ Sbjct: 254 SIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVLGFTR 313 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + N + ++Y+ I +S +LL +IN+ILD S++EAG+ L + + Sbjct: 314 QMLKTRL----NPSQQDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFAESL 369 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVH 390 E + +L A EK +E+ K+D + + D ++QV+ NL+ NAVKFT G V Sbjct: 370 DEVMRLLAPTAHEKGLELTLKVDDRIPPSLIGDALRIQQVLTNLIGNAVKFTERGNIDVT 429 Query: 391 VTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + ++D G GI+E + + +F Q +I G GLGL I Q Sbjct: 430 VELKSDKDDEGIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQK 489 Query: 448 IMANHGGQFLIRSKLREGVEVIAI-------LPNTRVLNFI 481 +++ GG+ + S+L +G LP +++++ Sbjct: 490 LVSQMGGEVSLTSRLHQGSTFWFTVRLTKTDLPVSQLIDTS 530 >gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116] Length = 1054 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-Y 205 + +I+ + L + +SF + V ++ ++ L S+ Sbjct: 286 VGQAITIANQQRLMFIAVMSFITIAVISLALRLVRKVTNNLQLVLEFLRRDSYSKESPLR 345 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE+ + AKS FLA+MSH Sbjct: 346 ELIKGKDELSKFAQEVERLSYEREQAKVKLTQAKEDAEQAKDDAIKASKAKSSFLANMSH 405 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ ++ T K+Y+ I S Q LL+LIN+ILD S+IE+G Sbjct: 406 EIRTPLNGVIGISEVLSDTSLTA----TQKDYVDTIETSSQLLLSLINDILDFSKIESGM 461 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ +A+EK I + I + + D+ +RQVI+N +S Sbjct: 462 LLISPHSTCVRESIYDIASIVSPKAKEKGINLKVSISRNTPYRLMIDDHRLRQVIMNFMS 521 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + VT SG S++D+G GI E + + F Q + Sbjct: 522 NAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDSGIGIDEQQQKNIFEPFAQEDNSTTRQ 581 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG+ + S+ G + Sbjct: 582 FGGTGLGLAISTQLVELMGGKIQLESEKEHGSRFFFQI 619 >gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 623 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ +++ + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 380 ITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++YI I+ + Q LL LIN++LDLS+IEAG EL + +++ E I + R Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++F + + + D ++Q++ N +SNA+K T G + V T G IS Sbjct: 495 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GHIEVYYE-TDTDGIRIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F + S QG GLGL I +SI+ G + S + Sbjct: 553 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 608 Query: 465 GVEVIAILP 473 G LP Sbjct: 609 GSTFTVELP 617 >gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1296 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 7/265 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ E +K AE N AKS FLA+MSHE+RTPLN ++GFS+++ + L + Sbjct: 647 KSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVIGFSDLLRKTNLNIL----QTD 702 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I+ S LL +IN+ILD S+IEAG+ +L I+ +++V + + +A +KN+E Sbjct: 703 YTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGLELVESAVSFITFQASQKNLE 762 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKD 407 + + DP + + ADE +RQ+++NLL NAVKFT G + + V + D Sbjct: 763 LLIEYDPDVPIYFEADELRLRQILINLLGNAVKFT-ESGNIALKVTKLHKEDKLKFEVID 821 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI+ + + +F Q ++ G GLGL I+ ++ + + S++ +G Sbjct: 822 TGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNKLLKMMQSRLHLESEVNKGSN 881 Query: 468 VIAILPNTRVLNFIPEDNHESTQYK 492 + T+ + ++ E K Sbjct: 882 FSFSIAVTKSAKTLEQNKIEKPLRK 906 >gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] Length = 631 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 86/321 (26%), Positives = 159/321 (49%), Gaps = 12/321 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDIS----LAGMLATALSFFTYITYHLFKSNVKILSCQ 218 + + F +++AL ++S ++ A ++ + Y+ + ++ Sbjct: 315 ILIGFLSILLALIVSFVLSETIISPIKKLKSAAEKISSGDYNIYVNVNSNDEIGELAKAF 374 Query: 219 AEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + + + A +E+ ++ +E + KS ++ +SHELRTPL +I G+ E++ Sbjct: 375 NKMAEDVRKSHEALKKHAKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELV 434 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 MG L NE + + + L LI+ +LDLS+IE+G + I + D++ E Sbjct: 435 LDGLMGEL-NENQRRCLEIAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINE 493 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + LQ +EKNIE+ I+ +L + D+ + QV++NL+ NA+KF+ + G + + Sbjct: 494 VLNSLQPLTKEKNIEVKCDIEDNL-TAKVDKDRIIQVLINLIENAIKFSPVKGVIEIHAF 552 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +I IKD GPGI + ++ + F Q + K G GLGL I +SI+ HGG Sbjct: 553 R-DKNYAHIIIKDYGPGIPKKDLERIFDKFYQVNFP-KIKRDGAGLGLAICKSIIEAHGG 610 Query: 455 QFLIRSKLREGVEVIAILPNT 475 + + S+L +G +LP Sbjct: 611 KIWVESELGKGSAFHILLPME 631 >gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] Length = 623 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ +++ + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 380 ITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++YI I+ + Q LL LIN++LDLS+IEAG EL + +++ E I + R Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++F + + + D ++Q++ N +SNA+K T G + V T G IS Sbjct: 495 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GHIEVYYE-TDTDGIRIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F + S QG GLGL I +SI+ G + S + Sbjct: 553 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 608 Query: 465 GVEVIAILP 473 G LP Sbjct: 609 GSTFTVELP 617 >gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7] gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 935 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLEGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + L + + E I ++ AQ K +E+ I P++ V D Sbjct: 355 DILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDA 414 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + + + + D G GI + + + Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526 >gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 935 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 166/355 (46%), Gaps = 18/355 (5%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL----S 198 +L + + + L + + V + + +L+ +L Sbjct: 222 IYVLQSEGLMVMLRNRLLPILSIVLLGVFGFSFVLSFTLNAHISKALSELLKGFESIKKG 281 Query: 199 FFTYIT----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 F + L + ++ + + + L+ + + + K A++ + KS FLA Sbjct: 282 SFVRVKLNSNDELGEIASELNNTMVFIEKTLDRLKNSNEMLRKVSKEAQQASKMKSEFLA 341 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+NAILGF+E++ + N +Y+ I+RSG+HLL+LIN++LDLS+I Sbjct: 342 NMSHEMRTPMNAILGFAELLMND----ETNLEKMKYLKTIYRSGEHLLSLINDVLDLSKI 397 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EA R++L S S +V+E A K + I + V DE +RQV+ Sbjct: 398 EAARFDLIISPYSPAKLVKEITETYLPMAYSKGLHFANSITERVPEYVDGDEFRVRQVLT 457 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NL+SN +KFT G +V+V I +++D G G++ EI + F Q + Sbjct: 458 NLVSNGLKFTDKG---YVSVLLDYDGHHLIYTVQDTGSGVSREEIDKIFEPFIQADGTMS 514 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I + I+ GG SK+ EG +V +P + V +P+ + Sbjct: 515 RKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKVTVRIP-SNVSKEVPKQKEK 568 >gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 919 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 13/274 (4%) Query: 225 IAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I E A ++E R + + AKS+FLA+M HE+RTPLNA++G S + + Sbjct: 412 IIEDVTANREAEELRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTEL-- 469 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + Y+ I S + LLN+IN+ILD S++EAG+ EL ++ ++L +++ M Q Sbjct: 470 --DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQS 527 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWT 396 +AQEK IE ++ P L + D + QV+ NL++NAVKFT G V V + Sbjct: 528 KAQEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEK-GEVVVAIKPLRREE 586 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + ++D G GIA ++ + T F Q + G GLGL I++ ++ GG+ Sbjct: 587 EEVVVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGEL 646 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S G +P P + Sbjct: 647 QVESVPGSGSSFSFTVPLALPDAVNPVAQPREQE 680 >gi|17232370|ref|NP_488918.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134015|dbj|BAB76577.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 941 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 27/375 (7%) Query: 117 IGLCWTLLTLVEPGTWTPEYLT---IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 +GL W ++ +V + + T L + +A+ + + + Sbjct: 342 LGLDWLVIVVVPESDFMGQINTNNRTTILLCLWALIIATAMGVYTSRWIARPIVQLTQAS 401 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + +S L+T + F + L S ++ E ++ +AE + Sbjct: 402 SAIASGNLDQEVRVSGLKELSTLATSFNQMAGQLRDSFAELEKTNQELENRVAE---RTA 458 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ A+ N AKS FLA+MSHELRTPLN ILG++++++ + N+ + + Sbjct: 459 EITAAKEVADAANRAKSEFLANMSHELRTPLNGILGYAQILQ---LDSNTNDEQMQGLNT 515 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ G HLL LIN+ILD+++IEA + EL L ++ M ++ ++K I + Sbjct: 516 IYECGSHLLTLINDILDIAKIEAKKLELYPQEFDLGRLLLGVCEMCHIKVEQKGISFKYQ 575 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------------- 398 + + +ADEK +RQV++N+LSNA+KFT G V V + Sbjct: 576 FNDYIPSKTFADEKRIRQVLINILSNAIKFT-DNGTVTFDVEVVACTGTKLITNTNQILP 634 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I+D G G+ + ++ + F Q + +G GLGL I+ I+ G Sbjct: 635 VHQLRFQIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEGTGLGLAISSQILELMGSDIK 693 Query: 458 IRSKLREGVEVIAIL 472 + S +G + L Sbjct: 694 VESVYGKGTKFWFDL 708 >gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 770 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 170/346 (49%), Gaps = 23/346 (6%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 L++ A+S ML L+ P+ ++ ++ +A A + + + + Sbjct: 157 WTVLAVIAMSLLMLYLVYRLALNPL------------QIVHARMSNAVAGAKTAHSSLPW 204 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + + +D AE + + + R++AE + AKS FLA+MSHE+RTP+N Sbjct: 205 YSSREFQALNVSVGVLEDSFAERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMN 264 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G +EV+ + P + Y I +SG LL +IN+IL+ S+IEAG+ EL+++ Sbjct: 265 GVIGMAEVLRETKLTP----DQEMYTDTIVKSGNALLTIINDILNFSKIEAGKLELTQAT 320 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384 +L +V + +++L +A EK +++ + DP L + D +RQ+I N++ NAVKFT+ Sbjct: 321 FNLRTVVEDVVMLLAPKAAEKWVQLTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTS 380 Query: 385 IGG-RVHVT-VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + VT IS+ D G GI ++ + +F Q A + +G GLGL Sbjct: 381 QGSVHIDVTGTSRGKEMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGL 440 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF--IPED 484 I+ ++ G+ + S +G LP + +PE Sbjct: 441 AISTRLLQLMKGRIHVTSSEGKGSVFTIDITLPTSDRAPVAFLPEQ 486 >gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] Length = 1771 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L+ I L+ + + + A+ + AKS FLA+MSHE+RTP+NAI+G S++ Sbjct: 1013 TLNSAVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQL 1072 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + ++ + Y+ I R+ + LL +IN+ILD S+IEAG+ ++ + L ++ Sbjct: 1073 CLQTEL----DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLE 1128 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + M ++A +K +E+ + P++ + D + QV++NL++NAVKFT G V ++ Sbjct: 1129 DLSDMFSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQ-GEVLLS 1187 Query: 393 V----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + S++DNG G+ E + + SF Q + G GLGL I + + Sbjct: 1188 ISQLERVDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQL 1247 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + GG+ + S+ G Sbjct: 1248 VELMGGEIGVESQFGNGSTFFFT 1270 >gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] Length = 837 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 10/274 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + +++S L +AK + ++ A+ N AK +FLA+MSHE+RT Sbjct: 128 LAIRRQDGTFRVVSVHMLIQAQSHLLAIAKDVIQSQKESADAANRAKGQFLANMSHEIRT 187 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G +E++ + P EY+ I S L+++IN+ILD S+IEAG+ E+ Sbjct: 188 PMNGIIGMTELLLETELAP----QQHEYLQMIKTSADCLVSVINDILDFSKIEAGKLEIE 243 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 L + + + + L RA K +E+ + P + + D +RQ+++NL+ NA+K Sbjct: 244 SIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGRLRQILVNLVGNAIK 303 Query: 382 FTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + V V + ++ D G GI E + + +F Q G Sbjct: 304 FT-EHGEIVVRVDIDEISETDALLHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGG 362 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I ++ G+ + S++ G + Sbjct: 363 TGLGLSICSRLVELMHGKIWVESQVHVGSQFHFT 396 >gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula baltica WH47] Length = 843 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 27/291 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +L+ +++ E + A+ N +KS FLA+MSHE+RTP+NA++G ++++ + P Sbjct: 248 RDITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKLDP- 306 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ I S LL LIN+ILD S+IEA R EL SL + + + Sbjct: 307 ---DQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFK 363 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393 A EK +E+ + I P L + D +RQV+ NL+ NA+KFT GG Sbjct: 364 ASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERA 423 Query: 394 --------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D+G GI + VL F Q + G G Sbjct: 424 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 483 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 LGL I++ ++ GG+ ++S++ G L +P + + + Sbjct: 484 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEE 534 >gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri DSM 4166] Length = 908 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 161/362 (44%), Gaps = 15/362 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 TLL + + T L+AL +S + L L T+ Sbjct: 150 TLLRGYRSLLTSLFLVGTGLIITALLALRMSRAISLPLQRVKAAVAQLKDGHLETRLPPL 209 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 LA + L +S + + + I E+ D RK Sbjct: 210 GSHEMDELASGINRMAEALLSAREELQQSIDQATEDVQQNLETI---EIQNIELDLARKE 266 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A E + KS FLA+MSHE+RTPLN ILGF+++++ + P ++Y+G I +S L Sbjct: 267 ALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGTIEKSADSL 322 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360 L +INEILD S+IEAG+ L +L D++ + + +L A K +E+ + S Sbjct: 323 LGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLS 382 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGE 416 + D ++QV+ NL+SNA+KFT G + V IS++D G G+ + + Sbjct: 383 LVGDPLRLKQVLTNLISNAIKFTNE-GTIAVRAMVEDDNAERAQLRISVQDTGIGLTDQD 441 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + + +F Q ++ G GLGL I++ ++ GG+ + S EG E LP Sbjct: 442 LRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLSLPK 501 Query: 475 TR 476 R Sbjct: 502 AR 503 >gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1230 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + P Sbjct: 698 ITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTP--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ S Q LL +IN+ILD S+IEAG+ EL A L ++ + + L+AQ Sbjct: 755 -QQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ + + D + QV++N+LSNAVKFT G + + R I Sbjct: 814 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI++ + ++ +F Q + G GLGL I++ +++ GG ++ Sbjct: 873 TLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQ 932 Query: 460 SKLREGVEVIAIL 472 S+L G + Sbjct: 933 SELGVGSTFSFTI 945 >gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1] gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1156 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 147/273 (53%), Gaps = 6/273 (2%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 ++ L K ++ + + I + + + + +++AEE +KS FLA+MSHE+ Sbjct: 744 VSLSLSLLKDEHGNVAGRIGINQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEI 803 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPL+AILGF ++++ E + + KEY+ I S + LL +I +ILD S+IE+G+ E Sbjct: 804 RTPLSAILGFIDLLKKENI----EKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLE 859 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + + S I + + EK+I + +D SL + D ++Q+I NLLSNA Sbjct: 860 IDKIDFSPKIEFETIIHLFLAKCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNA 919 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +KFT G ++ VT+ + +S+KD G GIA+ ++ + SF Q + G G Sbjct: 920 IKFTDQGKKITVTINY-KNGFLNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTG 978 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I+ ++ GG+ ++SK+ G E + Sbjct: 979 LGLTISYRLVKILGGELHVKSKVGAGSEFYFSI 1011 >gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 770 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 111/285 (38%), Positives = 163/285 (57%), Gaps = 9/285 (3%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAK 249 ++ L +S ++++ A+ LE+ E + +AE+ N AK Sbjct: 471 ITALKRHEERLMESEKRLMALVADLRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAK 530 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLNAI+GFSE++E GPL ++ Y EY DI SG++LL++IN+IL Sbjct: 531 SEFLANMSHELRTPLNAIIGFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDIL 590 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+SRIEAGR L+ + L ++V + I ++ +RA EK I + D S+ AD++ ++ Sbjct: 591 DMSRIEAGRMHLNLQPVELDEVVTDSIRVMSVRADEKQITVAADTD-GAVSLEADKRALK 649 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+ LNLLSNA+KFT GRV V ++ R + I+D+G GI + + + F Q Sbjct: 650 QITLNLLSNAIKFTPENGRVSVRTRRSA-RAALLVIEDSGIGIPKAALAKIGKPFEQVES 708 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL IA+S++ HGG IRS G VI LP Sbjct: 709 QFTKTHKGSGLGLAIAKSLVELHGGTMRIRSSEGVGTTVIIRLPL 753 >gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 843 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 104/278 (37%), Positives = 153/278 (55%), Gaps = 10/278 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELR 261 + + L+ + ++ + + L++ RK RAE N AKS FLA+MSHELR Sbjct: 555 NQDEARRLNQEQLQNAVAGLERSQEQLAELARKYETEKVRAEGANRAKSEFLANMSHELR 614 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI GFSE++ E GPL +E YK Y DIH SGQHLL LIN+ILD+S+IEAG+ L Sbjct: 615 TPLNAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNL 674 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + + D+ + + +++ RA+ + + P L + AD + ++QV+LNLLSNA+K Sbjct: 675 KFEPMHVEDVAEDAVRLVRNRAEAAGLNLRIDFPP-LPEIEADYRAIKQVLLNLLSNAIK 733 Query: 382 FTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V +T +S+ D G GIA+ ++ + F Q QG Sbjct: 734 FTPRAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKEDLARLARPFEQVESQFSKTTQGT 793 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL + +S+++ H G + S EG V LP + Sbjct: 794 GLGLALTKSLISMHDGALEMTSTPGEGTTVSFALPIRQ 831 >gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] Length = 468 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 11/258 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + ELE+A E++ AEE + AKS FLA+MSHE+RTP++AI+G + + + Sbjct: 5 QVQARTNELELANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNL 64 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E +E++ + +S LL+++N ILDL++IEAGR EL ++ D++ + ML Sbjct: 65 ----TEEQREHLDTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKML 120 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q+ A++K++++ ++ + + D ++Q ILNL+ NA+KFT G V Sbjct: 121 QVSARQKDLDMSWEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQ 180 Query: 399 RG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 R S+KD G GI++ + V +F Q +I G GLGL I + ++A Sbjct: 181 RREEEAVCVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMM 240 Query: 453 GGQFLIRSKLREGVEVIA 470 GG+ + S+ +G Sbjct: 241 GGRIWLESEAGKGSTFYF 258 >gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] Length = 760 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 106/459 (23%), Positives = 186/459 (40%), Gaps = 20/459 (4%) Query: 37 IITLHVESLFRVSPILPLFVLLV-ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95 ++ + P+L ++V A + + L T A ++ ++ Sbjct: 32 LVPEQQLARREGLPLLTFVAIMVLAGLAHLTGAPIFISLALLATGLAGLALHLHARRSVH 91 Query: 96 SDIKIGEVYVWRIWLLVGQIAIGLCW----------TLLTLVEPGTWTPEYLTIYKSATL 145 + + + R + +A + W L+ + + A Sbjct: 92 RTVVLLDETTARSRAEIETLADRM-WEMQESEERFRGLIDALGDLVIHRDRDGYIVYANK 150 Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + A + L V + A L + + + Sbjct: 151 VFADLVET-DQRDLAGKTLAELGIEVGIVPDAAFSDHECLSSTDVAIRTPGGPRWFSWIE 209 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + I + A+S R+RAE + AKSRFLA++SHE+RTP+N Sbjct: 210 LSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMN 269 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+G + ++ ++ P + Y+G I S LL LI ++LD S+IEAGR++ Sbjct: 270 GIMGMARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQP 325 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 +S+ +I I +L RA K+I + ++P + + AD +RQV+LNL+ NA+KFT Sbjct: 326 MSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFTD 385 Query: 385 IGGR-VHV-TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG V + + +I D GPG+ E ++ + F Q A G GLGL Sbjct: 386 GGGVLVSIARARSETSDRICFTITDTGPGLREEDMERIFEEFEQADGTSTRAHGGAGLGL 445 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I++ ++A GG + S+L +G E + +P T Sbjct: 446 AISKRLVAAMGGTISVSSRLGQGSEFVFEIPATEATEAP 484 >gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 10/258 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ++ + R+ AE + AKS FLASMSHELRTPLN ++G +E++ + + Sbjct: 692 ATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTELLANTDL----D 747 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +++ SG+ LL LIN++LD S+IEAGR EL E L+ ++ + + ++ LR Sbjct: 748 ARQTQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVS 807 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 K+I++ ++D P + D +RQV++NL+ NA+KFT G++ + V Sbjct: 808 GKDIQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTER-GKISLRVEPLELTEDRA 866 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GI + + +F Q +I G GLGL I +S++ GG+ + Sbjct: 867 KLRFAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVD 926 Query: 460 SKLREGVEVIAILPNTRV 477 S G E L TRV Sbjct: 927 SIQGVGSEFYFTLELTRV 944 >gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] Length = 906 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 13/279 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 ++E + ++ AE +AKS FLA+MSHE+RTP+NA++G + ++ + Sbjct: 376 RDVSERVRGTAELVRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLMLDTDLTR- 434 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y I SG LL LIN ILD S+IE+G EL + SL + E +L + Sbjct: 435 ---EQRQYAETIRTSGDMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVNELLGPK 491 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A EK I + + + + D +RQ+++NL+SNA+KFT + G V V Sbjct: 492 AAEKGIVLTGMVSGQVPAMISGDSTRVRQILVNLISNAIKFTNV-GEVTVRASARPDEAL 550 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 I++ D G GI E + + F Q + G GLGL I++ + GG Sbjct: 551 SGEHLIITITVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRLSELMGG 610 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 ++SK+ G + V + + + Sbjct: 611 SITVQSKVGVGSSFRVTFRTSAVDPHLSPTTSNTRAERT 649 >gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus] Length = 1364 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 16/265 (6%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ L++E A+E + KS+FLA+MSHE+RTP+ ++G SE++ NE KE Sbjct: 720 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMDLNEEQKEC 773 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +IHRS LL +IN+ILD S++E+GR ++ E SL ++R+ M+ A K +E Sbjct: 774 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEY 833 Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYIS 404 I + V D +RQ++ N+L+N++KFT++G V ++ S Sbjct: 834 QSLIQDEVQSDLRVIGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFS 893 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI E + F Q + G GLGL I+++++ GQ + SKL + Sbjct: 894 IVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 953 Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489 G +P TR P + ES Sbjct: 954 GTTATFWIPFTR----APSQDGESP 974 >gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 981 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 30/280 (10%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L ++ ++ E + KS FLA+MSHE RTPLN+I+GFS+++ GPL Sbjct: 693 HLEQTVQEKTRTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSDILRDPAFGPL 752 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + +I SGQHLL+LIN++LDLS++EAG+ +L + +R + +Q + Sbjct: 753 T-EKQARFAQNIQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAIRAALAEVQPQ 811 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 A K +E+ + D + S++ AD +Q++LNLLSNAVKFT GGR+ VTV + + Sbjct: 812 ADLKQLELTPQTDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVTVRRAARQEEG 871 Query: 401 --------------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 I++ D G GI ++P + F + AI Sbjct: 872 DTSQGAAGQGLEILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEFTRLDAAIAKR 931 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 +G GLGL + + ++ HGG+ S G LP Sbjct: 932 TKGTGLGLALTKRLVELHGGEIAAVSDGEGRGSTFTVRLP 971 >gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 1205 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + +++ ++ AEE + AKS FLA+MSH Sbjct: 514 WVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEAAEEASRAKSDFLANMSH 573 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N ILG + + + +E +EY+ + S Q LL +IN+ILD S+IEAG+ Sbjct: 574 EIRTPMNGILGMTRL----CLATELSEEQREYLDMVDSSAQLLLTVINDILDFSKIEAGK 629 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 ELS + SL ++VR+ + L L+A EK +EI I PSL+ AD +RQV+ NLL Sbjct: 630 LELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHADATRLRQVLGNLLG 689 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT + G V + V + S++D G GI+ + V SF Q +I G Sbjct: 690 NAVKFTEV-GEVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSISRRYGG 748 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GLGL I+ ++ GG + S+ G +P + +P+ N+ Sbjct: 749 TGLGLTISSRLVGMMGGTLQVESEAGLGSCFHFAVPL-PPGDILPDQNN 796 >gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 572 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 96/336 (28%), Positives = 149/336 (44%), Gaps = 19/336 (5%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 A+ S +V L+ A + VL +S HL + + Sbjct: 213 YWRQALMQSEPVIVDQLALDAFQAKSVLVVSTFYQNERNGLICLQQCKHLRPWSAAEIEF 272 Query: 218 QAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 E D + ++ AEE + KS FLAS +HELRTPLN I+GF +I Sbjct: 273 VQELADQVGTAIAHATLYQELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLI 332 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + E +E++ + H S HLLNLIN+ILDL++IEAG+ L+ S + L ++ Sbjct: 333 LDGM--ADDPEEQREFLEEAHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEA 390 Query: 335 CIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +AQ+KN+ K + ++ + + + QV+LNL+ NA+KFT GG + V+ Sbjct: 391 VNNFTCPQAQQKNLSFKLKKPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGG-IVVS 449 Query: 393 VGWTSGRG----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + IS+ D G G++ + + F Q + A G GLGL Sbjct: 450 AEVVKKKIFCHDQEFPAIAKISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGL 509 Query: 443 PIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477 I+Q ++ GGQ S G V +P +V Sbjct: 510 AISQKLVQAMGGQIDFYSMGEGLGSTVTFTVPLCQV 545 >gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] Length = 553 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 136/274 (49%), Gaps = 9/274 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L + + L + + E+ A N AKS+FLA MSHE+R Sbjct: 143 ITAHKLRMALLNALRSYRDIRRAADLQKQIMLAEQESMTAA-AANEAKSQFLAHMSHEIR 201 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN ILG ++++ + NE E+I I SG+ LL +IN+ILD S+IEAG+ EL Sbjct: 202 TPLNGILGLTDILAQTQL----NENQLEFIKTIRHSGEALLAIINDILDFSKIEAGKLEL 257 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 SL + + + + Q+K ++ +DP++ + D ++QV+LNL+SN++ Sbjct: 258 ESIDFSLPTLCDDLEGLFISQVQDKGLQFDINLDPNIPEFLNGDPLRIKQVLLNLISNSL 317 Query: 381 KFTAIGGRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 KFT G V + + + + + D+G GI+E + + F Q + G Sbjct: 318 KFTHE-GYVKLDIRQSQATPLVLEFKVSDSGIGISEEKQDQLFKPFTQVDSSTTRKYGGT 376 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I+Q ++ GG + S++ +G I L Sbjct: 377 GLGLQISQRLVQLMGGNIRLHSQVDKGSTFIFDL 410 >gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1200 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 144/296 (48%), Gaps = 11/296 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----KRAEEEN---LAKS 250 + + L S ++ Q E ELE L +E K+AEE KS Sbjct: 470 AELEAQSQKLQASEEELRVQQEELQQTNGELEERSGLLEEKNLEILKKAEELELTTRYKS 529 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+IL S ++ L +E EY I SG LL LI+EILD Sbjct: 530 EFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQI-EYATVIQSSGNGLLGLIDEILD 588 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 LS+IEAG+ EL +S+ +I + + A+EK ++ I + V D+ M Sbjct: 589 LSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKGLDFSVAIGNGVPPVIETDKMRME 648 Query: 370 QVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q++ NL+SNA+KFT+ G + V + + R ++D G G+A + + +F Q Sbjct: 649 QILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVVRDTGIGVAPEKQQHIFEAFQQAD 708 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483 + K G GLGL I++ + GG+ + S + EG E +P + PE Sbjct: 709 GSTKRKYGGTGLGLSISRELAKLLGGEISLTSVVNEGSEFTLFVPIKPTYVAAEPE 764 >gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37] gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 926 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 13/292 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 +A + ++ H + I +E + + ++EV D T+K+A++ L Sbjct: 231 IASLQLGINEMAVAMSKHHEEMQDSIDLATSELRETLDQMEVQNIELDITKKKAQQAALV 290 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLN ++GF+ + + +Y+ I RS +LL +IN+I Sbjct: 291 KSEFLANMSHELRTPLNGVIGFARQLLKTQLTT----NQIDYLQTIERSAGNLLKIINDI 346 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S++EAG++ L L D + E + +L A EKN+E+ +DP + V+ D Sbjct: 347 LDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLIVDPEVPYEVFGDAMR 406 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTV 420 ++Q++ NL+ NA+KFT G + + + + I I D+G GI++ + + Sbjct: 407 LQQILTNLIGNAIKFTEK-GDIKIQIQRIEEQTNRDNKVTLKIMISDSGIGISKKQQAQL 465 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +FGQ +I G GLGL I Q ++ G+ + S +G + Sbjct: 466 FKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGSTFGFTI 517 >gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1349 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 10/246 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + +++AE + K+ FLA+MSHE+RTP+N ++G + ++ + ++Y G Sbjct: 769 ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTT----EQRDYAGT 824 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + RSG+ LL LIN+ILD S++EAG+ + SA L + E ML + + + +++ + Sbjct: 825 VRRSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQ 884 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDN 408 D +RQV+ NL+ NA+KFT G + + V S ++I D Sbjct: 885 YPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGE-GSIVIEVVCESQDEARAVMRVAIHDT 943 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 GPGI +I ++ F Q + G GLGL I++ +++ GG + S+L EG Sbjct: 944 GPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGSTF 1003 Query: 469 IAILPN 474 LP Sbjct: 1004 SFTLPL 1009 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 134/275 (48%), Gaps = 10/275 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AEE N AKS FLA+MSHE+RTPLNA+LG +E + Sbjct: 344 RDITRFKRLEDRLRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLS----FIT 399 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EY+ I S LL +I++ILDLS+IEAG+ ++ E L ++ + + + + Sbjct: 400 EPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQ 459 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 AQEK +E+ + ++ + AD QV+ NL+SNA+KFT G V ++V + Sbjct: 460 AQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEE-GSVEISVTNDNRDSR 518 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G + + D G GI + SF Q + + G GLGL I++ ++ GG+ Sbjct: 519 DMGLLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEMLGGRIW 578 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S +G LP V S+ + Sbjct: 579 VESMPGKGSSFSFTLPIASVSKPAQPAPPTSSPVR 613 >gi|28900955|ref|NP_800610.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260366168|ref|ZP_05778628.1| putative lipoprotein [Vibrio parahaemolyticus K5030] gi|260879810|ref|ZP_05892165.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894484|ref|ZP_05902980.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|28809401|dbj|BAC62443.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086387|gb|EFO36082.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308092066|gb|EFO41761.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308114882|gb|EFO52422.1| putative lipoprotein [Vibrio parahaemolyticus K5030] Length = 785 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 134/271 (49%), Gaps = 7/271 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+ S + +AE AKS FLA+MSHELRTP+N +LG S++I ET P+ Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE+I I SGQHL+ ++N+ILD S++E + EL ++ L ++ +Q Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQPLID 361 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQY 402 EK+I++ + D P+ + D +RQ++ NL NAVKFT G V + + + Sbjct: 362 EKSIDLIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNSEDKHLL 420 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GIA + V SF Q + G GLGL I + + GG ++S Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G + I LP + P H Q + Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511 >gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + L + + ++ + E L EL + R+ AE+ N AKS FLA+MSHE Sbjct: 370 MRGVNQELQEQSEELQAQSEELRALNEELLSQRQQEQAAREDAEKANQAKSVFLATMSHE 429 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N +LG + ++E T+ +EY+ I SG+ LL++I+++LD S+IE+G+ Sbjct: 430 IRTPMNGVLGMASLLEETTLNN----EQREYVSTIKNSGETLLSVISDVLDFSKIESGKL 485 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 +L +L + E + + + +++ +I + + AD ++QV++NL+ N Sbjct: 486 DLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHIIADSLRLKQVLINLVGN 545 Query: 379 AVKFTAIGGRVHVTV---GWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A+KFT+ G V + V T +KD G GI ++P + +F Q + Sbjct: 546 AIKFTSK-GEVFLGVSLLSRTDDHSLELAFEVKDTGIGIPRDKLPRLFKAFSQIDSSTTR 604 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I + ++ GQ + S+L G + Sbjct: 605 RYGGSGLGLAICERLVHLMEGQITVESQLDLGTTFRFSIKAEESQQ 650 >gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1320 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 10/260 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + + +E+ D +AE AKS+FLA+MSHE+RTP+N ++G + ++ Sbjct: 632 AEQQLQQYTRRMEIQNQELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLD 691 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P + + SG++LL LIN+ILD S+IEAG+ EL L ++ E + Sbjct: 692 TDLDP----EQRRLAEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVL 747 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 M+ A EK++E+ +I P + + V D + +RQVI+NL+ NA+KFT G V + + Sbjct: 748 EMMAFNAHEKDLELTYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTER-GEVGLQLAL 806 Query: 396 TSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + D+G GI E ++ + T+F Q + G GLGL IA+ + Sbjct: 807 ERAEAGRALIRFEVHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQL 866 Query: 452 HGGQFLIRSKLREGVEVIAI 471 G + S+ +G Sbjct: 867 MNGDIGLESRPGQGSRFWFT 886 >gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1319 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 7/259 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + L + + +RAE N AKS FLA+MSHE+RTP+NAILG + +++ Sbjct: 679 ELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLK 738 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +T + T + + I + QHLL +I +ILDLS+I+AG+ L + SL ++ Sbjct: 739 RDT----PDHTQHDRLEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNV 794 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A+ K + I I S + V D +RQ +LN +NA+KFT G + V V Sbjct: 795 SALMSEQARAKGLTIIVDIGDSPAWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVE 854 Query: 395 W--TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++G ++D G GI+ + + +F Q + G GLGL I + Sbjct: 855 RPLSNGYLLRFEVEDTGIGISPEQREKLFQAFEQADASTTRKYGGTGLGLAITSRLATLM 914 Query: 453 GGQFLIRSKLREGVEVIAI 471 GG+ + S +G Sbjct: 915 GGEVGVESTQGKGSCFWFT 933 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 10/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I ++ A++ ++ AEE + K+ FLA+MSHE+RTP+NA++G + + + P Sbjct: 500 LADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTP 559 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +EY+ I SGQHLL +IN+ILD S+IEAG+ + L ++ ++ Sbjct: 560 ----RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399 +A K +E+ ID +L D + Q+++N +NAVKFT G + V + + Sbjct: 616 KATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQ 675 Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Y+++KD G GI I + SF Q + G GLGL I + I GG+ Sbjct: 676 DVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVG 735 Query: 458 IRSKLREGVEVI--AILPNTRVLNF 480 + S+ +G L + V+ Sbjct: 736 VESEYGQGSTFWAKVCLQKSNVIPH 760 >gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1164 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AE ++AKS FLA+MSHE+RTPLN ++GF++++ + N Sbjct: 632 ITHRKILENDLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRTDL----N 687 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ +H S LL+LIN+ILD S+IE+G+ EL + +++ D++ + +++ +A Sbjct: 688 QVQRKYMETVHLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKHKAY 747 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 EK +E+ I P + V+ D +RQ++LNL+ NA+KFT G + + + T Sbjct: 748 EKGLELILNISPKVPRNVFVDSLRLRQILLNLIGNALKFTLK-GEIQIKLTATPVNQNEF 806 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GI + + F Q + G GLGL I+ ++ + + Sbjct: 807 EFLFEVIDTGIGINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLLQLFDSKIELE 866 Query: 460 SKLREGVEVIAIL 472 S+L G Sbjct: 867 SELNHGSRFYFKF 879 >gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 642 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 99/259 (38%), Positives = 158/259 (61%), Gaps = 5/259 (1%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A +++DE A+ N +K+RFLA++SHELRTPLNAILGFS+++ E G N+E +E Sbjct: 357 RASTMADE----ADMANASKTRFLAAVSHELRTPLNAILGFSDILAREMFGKFNDERQRE 412 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ IH+SG+HLL L+N +LD+S+IE+GRYE+ L ++V C ML+L+A+++ + Sbjct: 413 YVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAMLRLQAEQRGVV 472 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + +++ P L V AD + ++Q+++NL+ NA+KFT GG ++V G +S+ D G Sbjct: 473 MTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGI-HEGLLVLSVSDTG 531 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E ++ + F Q + +G GLGL + + ++ HGGQF I S+ EG V Sbjct: 532 IGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIASQEGEGTVVT 591 Query: 470 AILPNTRVLNFIPEDNHES 488 LP P+ ++ Sbjct: 592 IRLPVNGSGANAPKSQTDA 610 >gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 498 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 3/273 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L + +A+ AEL + E+ + AKS+FLA+MSHE RTP Sbjct: 224 ARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTP 283 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILG++ ++ G + T K + I +G+HLL +INEILD++RIEAGR L+ Sbjct: 284 LNAILGYTNMLLQGVSGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNL 342 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S +L ++++E + L + + + P L V +D + ++Q++LNLLSNA+KFT Sbjct: 343 SDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFT 402 Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + V + IS+KD G GIA+ + F Q + A G GLGL Sbjct: 403 HE-GSIQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGL 461 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + + GG+ ++S L +G LP Sbjct: 462 SICRRLATMLGGRITVQSALGQGSTFTLHLPRR 494 >gi|226324999|ref|ZP_03800517.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758] gi|225206347|gb|EEG88701.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758] Length = 809 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 15/291 (5%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E + I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 576 AIVGLTAIAGANV---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + + E I+ +V D ++QV LNL+SNA+K+T Sbjct: 633 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFLNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDQRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 LG+ I+++I+ G + S L +G ++ + L ++ + + Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTIYLE--LQEQEKEQDKKSD 801 >gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 763 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ ++++ + Q +K + +T A+ N +KS FL++MSHELR Sbjct: 340 HLAVAIYQAQLYA-QVQEQKKTFEQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELR 398 Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 TPL I+G S + L + ++Y+ I SG+HLL +INEIL+ S++EAG+Y Sbjct: 399 TPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKY 458 Query: 320 ELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 LS SL + L+ A ++ N+++ +I+P + +AD + ++Q++ +LL+ Sbjct: 459 VLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLN 518 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GG V + + W G ++D G GIA+ +IP + SF Q + + G Sbjct: 519 NALKFTPEGGTVILRI-WREGNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGG 577 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + ++ HGG + S L+EG LP Sbjct: 578 TGLGLALTKQLVELHGGTIEVESVLQEGSIFTVRLP 613 >gi|71908362|ref|YP_285949.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71847983|gb|AAZ47479.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 455 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 101/443 (22%), Positives = 201/443 (45%), Gaps = 25/443 (5%) Query: 49 SPILPLFVLLVANIGTWFTQ--NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI--GEVY 104 I+ + + + + +W L + + L+L +K S ++ + Sbjct: 24 GQIVTIMIASSLCWVGYQEGVVPYLVGLWGLAAIGMALLRLALARKYAQSPVEERAENIL 83 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 W + +G + GL W++ T++ A I+ + +A Sbjct: 84 AWHRKIRLGALGSGLIWSVGTMLMMSGGNLPMQLFTAFAMAGISAGALPVLGAD-RWAYR 142 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L +P+++ + + + + + + AL FT + + + EK L Sbjct: 143 LFAWPIILTVIFSVFAT-DHMHAAFSALATLALIIFTRSADAFHRMLNETFELEREKTRL 201 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ + D+ R+ AE+ +LAK++FLA++SHELRTP+N ILG SE++ + + P Sbjct: 202 LSTV-------DQARQTAEKSDLAKTQFLANVSHELRTPMNGILGLSELLSSDPLTP--- 251 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + + L+ I+ +++LS +EAG + + ++ D++ + A Sbjct: 252 -DQAELLSLLRDTADGLMRQIDLLIELSALEAGHVVIKPAPFAVADLLEGLVSSQLRSAN 310 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +++ ++ DP L V D + +R++ +L+ NA+KFT G + +T + Q+ Sbjct: 311 EKGLKLEKQADPDLPLVLIGDLERLREIFDHLVGNAIKFT-EHGTISITAKLLEKQNQHA 369 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 SI+D GPGI+E ++ + F G ++ G+G+GLPI++ ++ GG+ I Sbjct: 370 RIAFSIRDTGPGISEEKLQVIKGLFAPGDSSLIRRHSGIGIGLPISRKLVELMGGEISIA 429 Query: 460 SKLREGVEVIAILPNTRVLNFIP 482 S++ G LP L P Sbjct: 430 SEVGVGSNFCFTLPFA--LEAAP 450 >gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 586 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 7/234 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TP+ A+ GF+E + G + ET + ++ I+ G L L Sbjct: 350 LERMRSEFVANVSHELKTPIAAVKGFAETLLAG--GVKDEETTRSFLQIIYDEGDRLNRL 407 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I ++L+LS+IE+ R L + + L ++ +L A++K+I + + L + AD Sbjct: 408 IGDLLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVPEHL-FIEAD 466 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 E +RQ+ +NLLSNA+ ++ GG+V V+ G I + D G GI + ++P + Sbjct: 467 EDRLRQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDLPRI 526 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A + G GLGL I + ++ H G + SK+ EG I LP Sbjct: 527 FERFYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELPL 580 >gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 1843 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-- 244 + + ++ + L +SN ++ + AE ++ LE S + + EE Sbjct: 1381 VGFVLNMISSNMRMEGLLLELKRSNAELEAQAAELNEKARLLEQKNSEVELASRSLEEKA 1440 Query: 245 -----ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + KS FLA+MSHELRTPLN++L S+++ G L E K + ++ SG Sbjct: 1441 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVK-FASTVYTSGH 1499 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LINEILDLS+IEAG+ + L + + + A+ K + ++ P L Sbjct: 1500 ELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMGPDLP 1559 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D + Q++ NL+SNA KFT G V + VG +G +++D G GI + Sbjct: 1560 ERIHTDPTRLLQILKNLISNAFKFTER-GEVVLDVGPAAGGALAFAVRDTGIGIPADKQK 1618 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q G GLGL I++ I GG ++S G +LP Sbjct: 1619 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGRGSVFTLVLPAR 1675 >gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM 14863] gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 444 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 5/302 (1%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 AL + H ++ A + +IL + E V Sbjct: 143 ALGRDHLEVTHHFELDERLARVLATGRPEALEIRRAHPQEQILEARLALAPSGGERGVLV 202 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 L D TR R + ++ F+A+++HELRTPL +I GF+E + + ET + ++ Sbjct: 203 MLRDITRSR--QLEQMRTEFVANVTHELRTPLTSIQGFAETLLEGALDE--PETARHFVE 258 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + R +HL LI+E+LDLSR+E+G++ + +++ +A+ +++ Sbjct: 259 IMLRESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVT 318 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 + L + D + QV+ NL+ NA+K+T GGR+ ++ G G I++ D G GI Sbjct: 319 EAPDGLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLSARR-DGDGVRIAVADTGAGI 377 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + ++ + F + A A G GLGL IA+ I+ HGG + S++ +G IL Sbjct: 378 PQADLGRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVIL 437 Query: 473 PN 474 P Sbjct: 438 PA 439 >gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera] Length = 1203 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 33/312 (10%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + L + + + +I + + ++ E Sbjct: 582 RFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMM-----------E 630 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + RAE ++AKS+FLA++SHE+RTP+N +LG +++ + + ++Y H S Sbjct: 631 LKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGL----DANQQDYAETAHAS 686 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ L++LINE+LD ++IE+GR EL L + + + ++ EK IE+ I Sbjct: 687 GKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQ 746 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------- 400 + V D RQ+I NL+ N++KFT G + V+V Sbjct: 747 VPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEETSII 806 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D G GI + F Q + G G+GL I++ ++ GG+ Sbjct: 807 KLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFE 866 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 867 SEPGTGSTFSFT 878 >gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 917 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 27/344 (7%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI-------TYHLFKSNVKILSCQA 219 + + + T ++ +L + A F + T L ++ ++ S Sbjct: 354 IVAIFLGVYTSRWIAEPILQLIKASEAIANGEFTHRVDIKKIKETEQLSQTFNQMSSQLQ 413 Query: 220 EK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + L +E + + ++ AE N AKS+FLA MSHELRTPLNAILGF++++ + Sbjct: 414 ELFETLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQI 473 Query: 279 --MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 N +++++ I RSG+HLL LIN++LD+S+IEAG+ L+ + L ++ Sbjct: 474 SLENNHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLE 533 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 M +RA + +++ P+L + +DE+ +RQV++NL+ NAVKFT G V + Sbjct: 534 EMFSIRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFT-ENGSVTLHSQV 592 Query: 396 TSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 Q +++D GPGIA +I + F Q K QG GLGLPI Sbjct: 593 IDPPNQIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPI 651 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 +Q + GG + S L G + RV PE+ S Sbjct: 652 SQQFVQLMGGDISVSSTLGVGSVFKFKI---RVSLGYPEEIASS 692 >gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] Length = 929 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 146/280 (52%), Gaps = 10/280 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 239 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 299 HELRTPLNGVIGFTRQMLKTKLTN----SQTDYLNTIEKSATNLLNIINDILDFSKLEAG 354 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L + + E + + A EK +E+ KIDP + + + D ++QV+ NL+ Sbjct: 355 KLALESIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDSLRIQQVLTNLV 414 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 N++KFT G + ++V S + + ++D G GI+E + + +F Q +I Sbjct: 415 GNSIKFT-EHGNIDISVEMRSQKEDVVELQFMVRDTGIGISERQQAQLFQAFSQADASIS 473 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q +++ GG+ + S+L +G L Sbjct: 474 RRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1253 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 8/259 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ + E + + E + AEE + AKS FLA+MSHE+RTP+N ILG +E+ + Sbjct: 549 EEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTPMNGILGMTELALQTELST 608 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 T + Y+ H S + LL +IN++LD S++EAG L +++ ++ V + + Sbjct: 609 ----TQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIAY 664 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397 A K IE+ ID LS + D ++Q++ NLL NAVKFT G V V S Sbjct: 665 SAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDVEVQGESDS 724 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D G GI +I ++ SF Q + + G GLGL I + ++ G+ Sbjct: 725 EAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIW 784 Query: 458 IRSKLREGVEVIAILPNTR 476 + S + EG ++P + Sbjct: 785 VESHMGEGSTFHFVIPFRK 803 >gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 816 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++L+ A+ + AE+ N+AK FLA+MSHE+RTP+N ++G ++++ G + Sbjct: 121 ISDLKRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLL----DGTELS 176 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I S L+ LIN++LD S+IEAG+ EL L D + + + L RA Sbjct: 177 VQQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAA 236 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ- 401 K +E+ + + ++ D +RQ+I NL+ NA+KFT G V V + T+ Sbjct: 237 HKGLELAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQ 296 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++D G GI++ + V T+FGQ + G GLGL IA + GG+ + S Sbjct: 297 LEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLES 356 Query: 461 KLREGVEVIA 470 + G Sbjct: 357 EPGVGSTFSF 366 >gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1285 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 6/280 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 H + +++ ++ + + + ++ A+ N AKS FLA+MSHELRTP Sbjct: 776 PRHWEDREISLMARVGDQLGVAMQQAELLEQLTKAKETADAANKAKSEFLANMSHELRTP 835 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGF++++ ++ EY+G I RSG+HLL+L+N++L++S+IEAGR L+E Sbjct: 836 LNAILGFTQLLAR---DSSLSDKQHEYVGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNE 892 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + L ++ M QL+AQ K +++ P + + DE +RQ+++NL+ N +KF Sbjct: 893 NHFDLYRLLNTLEEMFQLKAQSKGLQLIFDCHPDVPQYIKTDESKLRQILINLIGNGIKF 952 Query: 383 TAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T +G + V + S ++D G GIA E+ T+ F Q KS +G GLG Sbjct: 953 TEVGSVILRVKLSLLSTMTIDFEVEDTGLGIAPEELDTLFQPFIQTVSGRKSQ-EGTGLG 1011 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 LPI+Q + GG ++S L +G +P T+ + Sbjct: 1012 LPISQKFVQLMGGNISVKSNLNKGSMFRFEIPFTQSESAQ 1051 >gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB] gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB] Length = 1028 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 9/260 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + L A++ + R+ AE N +KS FLA+MSHE+RTPLNA+LG ++ Sbjct: 623 ELEQHHTHLEAQVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLR 682 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + + I + QHLL +IN+ILD+S+IEAG+ L E+ + + I++ Sbjct: 683 RDAPTL----EQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRV 738 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + +L RA++K +E+ D + D + Q ++N NAVKFT G + + Sbjct: 739 VSVLGDRARQKGLELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFT-EHGSITLKARR 797 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + ++D G GI++ I + F Q + G GLGL I + + Sbjct: 798 MADDSNGVLIRFEVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAEL 857 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG+ + S++ G Sbjct: 858 MGGKVGVSSRVGAGSRFWFT 877 >gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1162 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 127/253 (50%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + R AEE + AKS FLA+MSHE+RTPLN ++ ++E ++GP Sbjct: 386 ISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP--- 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ S + LLN+IN+ILD SRIEAGR EL+ L + +++L RA+ Sbjct: 443 -EQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRAR 501 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K +E+ D V D +RQ++ NL+ NAVKFT G + V V Sbjct: 502 SKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEK-GYILVQVSLAEAGEEKA 560 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS++D G GI + F Q + G GLGL I++S++ GG + Sbjct: 561 RLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQVM 620 Query: 460 SKLREGVEVIAIL 472 S+ EG L Sbjct: 621 SREGEGSTFFFEL 633 >gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 1126 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 134/261 (51%), Gaps = 8/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + E RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 568 VTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 624 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K +I I +SG LL +IN+ILD S+I+AG+ +L ++A + + V + +L A Sbjct: 625 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 683 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V +G Sbjct: 684 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVAGGEIM 743 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I+D G GI E ++ +V F Q + +G GLGL I ++ GG + S Sbjct: 744 ANIRIEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVES 803 Query: 461 KLREGVEVIAILPNTRVLNFI 481 + EG LP + Sbjct: 804 QWGEGSVFTVNLPFAVAAAHL 824 >gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 957 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHELRTPL ++LGF+E++ +T+ E K+Y+ I++ Q L + Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK---EERQKKYLTTIYQEAQRLTS 637 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ R+EAG+ + ++ ++++ I + +++ + E D +V Sbjct: 638 LINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKH--EFDMISDQEHFTVMG 695 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+ + Q+ N++SNAVK++ GG V V V + YI I+D G GI + + T Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDEGIGIPSEALGQLFTK 754 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + + G GLGL I + I+ HGG ++S+ ++G +LP Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLPL 805 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 22/291 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDET----------RKRAEEENLAK 249 H +S++ + + + + + E + E + K Sbjct: 1317 PRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNQELIRATRLK 1376 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 FLA+MSHELRTPLNAILG +E + E GP+ N+ + + + RS HLL LIN+IL Sbjct: 1377 DEFLANMSHELRTPLNAILGMTEGLHEEVFGPV-NDRQLKALQTVERSASHLLALINDIL 1435 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+++IE+G+ EL S ++ + + I ++ +A +K I++ + +L + DE+ +R Sbjct: 1436 DVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNLPDIILDERRIR 1495 Query: 370 QVILNLLSNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 QV++NLL+NAVKFT GG + + V S++D G GI+ I + Sbjct: 1496 QVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIGISPENIKKLFQ 1555 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q A+ QG GLGL + + I+ HGG+ + S++ G LP Sbjct: 1556 PFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGSCFSIDLP 1606 >gi|238499603|ref|XP_002381036.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus flavus NRRL3357] gi|220692789|gb|EED49135.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus flavus NRRL3357] Length = 900 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 269 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 328 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 329 DTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNA 385 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 386 LKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIR 444 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 445 KSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKR 504 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 505 LVNLMGGDVWVTSEYGHGSTFHFT 528 >gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1236 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 10/283 (3%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + S I + + E ++ AE N+ KS FLA Sbjct: 668 GLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEAKQDAELANMYKSEFLA 727 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+NAI+G ++ + ++ ++Y+ S Q LL +IN+ILD S+I Sbjct: 728 NMSHEIRTPMNAIIGMLQLAQRTSLTV----QQQDYLNKAGFSAQSLLRIINDILDFSKI 783 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVIL 373 EAG+ EL A L ++ I + ++AQEK +E+ + + + D + QVI+ Sbjct: 784 EAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLILYGDPLRLGQVIV 843 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNAVKFT G V + R I+ ++D G GI++ + + +F Q Sbjct: 844 NLLSNAVKFTQT-GEVELGCEDVGERDDRITMKFWVRDTGIGISKDQQAMLFDAFSQADG 902 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I++ +++ GG + S+L G + Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTI 945 >gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 758 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 128/284 (45%), Gaps = 24/284 (8%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRF 252 L ++ +A AELE A +L E + AE + AKS F Sbjct: 174 LQETKANADELEARVRARTAELESANALLHEEIGRRMLVELDLKRAKDAAEAADRAKSVF 233 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+N +LG + ++ + N + + +SG+ LL +IN+ILD S Sbjct: 234 LANMSHEIRTPMNGVLGMANLLLATPL----NPEQHDLAETLCQSGESLLTIINDILDFS 289 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 +IEAGR EL L D + + + A K++E+ IDP++ V D +RQ+ Sbjct: 290 KIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHVRGDPGRLRQI 349 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +LNL+ NA+KFT G V V V ++ D G GI E + F Q Sbjct: 350 LLNLVGNAIKFTEK-GEVVVKVTVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQA 408 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I + + G + SK EG Sbjct: 409 DTSTTRRFGGSGLGLVICKRLAELMSGSIGVESKPNEGSTFWFT 452 >gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 448 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 12/309 (3%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-----------DLIA 226 ++ ++ + + + ++ + + + E + I Sbjct: 136 RVLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVADRTRALMQEIQ 195 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E A+ + +++AE N AKS FLA+MSHELRTPLNAI+GFS ++E E +GPL + Sbjct: 196 ERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMESEIVGPLGHPK 255 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 Y +Y I +SGQHLL +I++ILD+++IEAG+ E+ + + D V ++++ RA+E Sbjct: 256 YLDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAERAKEG 315 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + Q I P + D ++Q++LNLL+NAVKFT GG V + V G I + Sbjct: 316 GLTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRP-EGGRILIEVA 374 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G G++ I L FGQ + G GLGLP+ +S + G IRS+ EG Sbjct: 375 DSGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLDIRSREGEGT 434 Query: 467 EVIAILPNT 475 + LP Sbjct: 435 TISVRLPVA 443 >gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 404 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 7/387 (1%) Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 ++ + + + + + + L I + L I Sbjct: 22 AVRRALKKAGIAAQFHEATDAEEALALVSQTTFDCIFLDYRLPDYDGLDLIKQLKGLGIQ 81 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + L+ +++ +S L +L L + Sbjct: 82 VPLIVLTGQGDEQIAVEMMKAGASDYLSKSRVSPETLSQTLRNALRIYQAE-----KEAA 136 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++N+K+ ELE + + ++ +E + KS+FLA+MSHELRTP+NAI+ Sbjct: 137 QANLKLRETNQLLKQQNQELERQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIM 196 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFS+++ PL + + I + ++LL L+N++LD S+IEAG+ L L Sbjct: 197 GFSQMLLRRYPEPLT-PAQTDLVQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDL 255 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +V L+ A KN+ + +++ + D+ +R++++NLLSNA+KFT GG Sbjct: 256 KQLVVLTTEELRSLAISKNLSLQIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGG- 314 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V VTV + I+++D G GIA+ + + F Q + G GLGL I++S+ Sbjct: 315 VSVTVWELNPDLMAIAVEDTGIGIAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESL 374 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475 + G+ + S+L +G P Sbjct: 375 IKMMHGKITVTSELGKGSIFQIEFPRK 401 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 142/304 (46%), Gaps = 10/304 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ + T + + + I + A+++ R+ AEE N AKS Sbjct: 526 IIVHGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQSARQAAEEANKAKSA 585 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTP+NAILG ++ + +Y + + LL L+N+ILD Sbjct: 586 FLANMSHELRTPMNAILGMLTLLRKTGLNN----KQADYAVKSEAATRTLLRLLNDILDF 641 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAG+ L + ++R+ ++L + K +E+ IDP+L V D ++Q Sbjct: 642 SKIEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQ 701 Query: 371 VILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NL NA+KFT G V + V + + ++D G GIA ++ F Q Sbjct: 702 ILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGIAPEHQESIFGGFTQA 761 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIPEDN 485 + G GLGL I+Q +A GG+ + S+ +G LP + N + ++ Sbjct: 762 EASTTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTITLPLSSPSNLVIDNE 821 Query: 486 HEST 489 ST Sbjct: 822 IPST 825 >gi|332532699|ref|ZP_08408575.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis ANT/505] gi|332037915|gb|EGI74364.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis ANT/505] Length = 888 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 15/344 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L++ +SI L + L P+ + + + L + L + Sbjct: 290 AISLITGLIVIISIITLPILIFIVVRNLLLNPIELLGAASHRVGDGDLSVHLPAHTNDEV 349 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAK 249 H+ E + + E S + +AE+ N K Sbjct: 350 GVLFNDFNHMVNQIRHYQQQLEEYKHHLEDKVESRTKALEAMNSQLELAIGQAEQANQLK 409 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 SRFLA+MSHE+RTPL AI+GF+E + + K+++ I R+ +HLL LIN IL Sbjct: 410 SRFLANMSHEIRTPLTAIMGFTEQLLHNDKVAND----KQHLSTILRNSKHLLELINNIL 465 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IEA + + SA++++ +V + ++Q AQEK + + L +++D + Sbjct: 466 DLSKIEAEKLAVDLSALNVVQLVHDIESIIQPLAQEKQLTLNIDYQLPLPRTIYSDVTRL 525 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q+++N+ +NAVKFT G V + V + + + IKD G G++E +I V F Q Sbjct: 526 KQILINIANNAVKFT-ENGSVSICVHYLQASQKLEFVIKDTGIGMSEHQIERVFKPFEQA 584 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++++ GG + S++ G Sbjct: 585 DATTTRRFGGTGLGLCISKNLALLLGGDVTLESEVGVGSRFTIR 628 >gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 693 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 102/289 (35%), Positives = 159/289 (55%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + +T +++ ++ + + E A + +++E N AK FLA+MSHE Sbjct: 388 WLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHE 447 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFSE+I +++GP+ N Y EY DIH SG+ LL++INEILDLS IE GR Sbjct: 448 LRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRVLLDVINEILDLSAIETGRR 507 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL E + + +VR + +++ RA + + + +D +L V ADE ++Q++ NLLSNA Sbjct: 508 ELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPLVRADETALKQILSNLLSNA 567 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT GGR+ T ++++D G G+ ++ + F Q + G G Sbjct: 568 VKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHAMEPFRQVEKPLTRHAGGAG 627 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 LGLP+ ++++ HGG F + S G LP RV P + + Sbjct: 628 LGLPLVKALVDLHGGSFELESTPDAGTLASVWLPADRVRRDTPPEASRT 676 >gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1115 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 137/261 (52%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + L + R++AE N AKS FLA+MSHE+RTP+NA++GFSE+ + N Sbjct: 594 ITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRTPMNAVIGFSELALDDP----NP 649 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + ++ I S + LL ++N+ILD S+IE+ + L ++L +++ + M ++A+ Sbjct: 650 VSQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLEMEVLNLDELLGQVRRMFVMQAK 709 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 E+ +++ + + ++ D +RQ++ NLL NA+KFT G ++V T+ Sbjct: 710 ERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAIQTNSENVT 769 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +KD+G G++ ++ ++ F Q +I G GLGL I++++ G + S Sbjct: 770 LDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGTGLGLTISRNLARLMDGDIRVDS 829 Query: 461 KLREGVEVI--AILPNTRVLN 479 G E LP + Sbjct: 830 VAGTGSEFHFEVTLPIANAMQ 850 >gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] Length = 2333 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 14/301 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ A + + +N ++ Q E E AK E + E+ Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1885 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G N+ EY+ I LL LIN Sbjct: 1886 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTNLNKEQDEYVESIRVCADTLLTLIN 1941 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + +D V D Sbjct: 1942 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVLGD 2001 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + + D G GI E + + Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKGRLRLECAVSDTGIGIPEEQKSRLF 2061 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG + S G V L ++ + Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFRLSFSKAKDP 2121 Query: 481 I 481 + Sbjct: 2122 L 2122 >gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 586 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 150/296 (50%), Gaps = 2/296 (0%) Query: 181 SMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 VL LA + + + + + + Q + L + D R Sbjct: 292 WRWVLARGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANEQLEQRVVERTRELDLAR 351 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +AEE N KS FLA+MSHELRTPLNAI+GFS+V+ GP+ N Y EYIG I SG Sbjct: 352 CQAEEANRCKSEFLANMSHELRTPLNAIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGH 411 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL +IN+ILDL+++E GR++LS + ++ ++ I ++ RA + + K +P L Sbjct: 412 HLLRIINDILDLAKVEVGRFDLSRESTPVLPLLESAIRLVSERATRAEVNVGCKAEPGLG 471 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 D M+QV+LNLLSNAVKFT GG V + I + D G G+ E + Sbjct: 472 DAMLDPLRMKQVLLNLLSNAVKFTPAGGSVSLEARHEGTDLVLI-VADTGIGMDEESLEK 530 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L F Q ++ G GLGLP+A+S HGG + S+ EG V +P Sbjct: 531 ALQPFVQVESSLSRRYAGTGLGLPLAKSFSELHGGSLDLVSRPGEGTTVTVRIPRK 586 >gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1932 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 100/391 (25%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ +LT + T IA+ ++ ++ M + Sbjct: 1102 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1161 Query: 167 FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L TQ A L + L ++N L +AE L Sbjct: 1162 SQSLAEELQTQQSELRETNQRLEQQAQSLKASEDLLRGQQEELQQTN-AELEEKAELLAL 1220 Query: 225 IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E+E ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1221 QKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTD 1280 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 L EY I+ +G LL LIN+ILDL++IE+G + + I L ++ + Sbjct: 1281 NVDSNLT-AKQVEYSQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIE 1339 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 AQ K + ++ P L + V D K ++QV+ NLLSNA KFT G V + + Sbjct: 1340 RGFGQIAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTER-GEVRLRIEV 1398 Query: 396 TSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 ++ D G GIA + + +F Q G GLGL Sbjct: 1399 AKPGWNPNQQPLNPAQNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGL 1458 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I++ I GG+ + S +G LP Sbjct: 1459 SISREIAHLLGGEIKLTSHPGQGSTFTFYLP 1489 >gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1055 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 157/292 (53%), Gaps = 17/292 (5%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + L ++ + + + I + + + + AE N KS FLA+MSHE Sbjct: 542 WVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVALQQALDAAEAANHGKSEFLANMSHE 601 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAILGF++++ N+ ++Y+G I RSG+HLL+LIN +L++S+IEAGR Sbjct: 602 LRTPLNAILGFTQLMAR---DASLNQDQQDYLGIITRSGEHLLDLINNVLNMSKIEAGRI 658 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 LSE++ L +V ML+L+A K +++ + ++ + ADE +RQ+++NL+ N Sbjct: 659 SLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGMADEGKLRQILINLVGN 718 Query: 379 AVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 AVKFT+ GRV + V S R + ++D G GI E+ T+ +F Q Sbjct: 719 AVKFTSQ-GRVILRVQEISDRITAPTNTDTQSRLFFEVEDTGVGIPPDELDTLFQAFVQT 777 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + + ++ G GLGL I++ + GG I S +G V +P VL Sbjct: 778 KTS-QRSQSGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFDIPIGIVLQ 828 >gi|153836688|ref|ZP_01989355.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810] gi|149750037|gb|EDM60782.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810] Length = 785 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 91/271 (33%), Positives = 133/271 (49%), Gaps = 7/271 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+ S + +AE AKS FLA+MSHELRTP+N +LG S++I ET P+ Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE+I I SGQHL+ ++N+ILD S++E + EL ++ L ++ +Q Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQPLID 361 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK+IE+ + D P+ + D +RQ++ NL NAVKFT G V + Q Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNGEDKQLL 420 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GIA + V SF Q + G GLGL I + + GG ++S Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G + I LP + P H Q + Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511 >gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21] gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21] Length = 1361 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 110/378 (29%), Positives = 178/378 (47%), Gaps = 10/378 (2%) Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT-----IYKSATLLIALSISALSNF 157 + ++ L G++ + L ++ P TP I + + +S+ A Sbjct: 433 LRRFKRSHLEGELGVILSSGTVSCYAPQEATPLRFATSFGDIVPAEIATVPISVDAEIRA 492 Query: 158 MLPYAVFLSFFP-VVVALSTQAIMSMHVLDISLAGMLATALS-FFTYITYHLFKSNVKIL 215 + A F P V L + L+G L+ L + + +++ Sbjct: 493 FVSIASERPFPPKVREILELVQMPLGSAFARILSGEDVRLLANELALKNAELTQQSEELV 552 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E EL + D +++ EE KS FL++MSHELRTPLN++L S V+ Sbjct: 553 QQSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLA 612 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ L + K Y+ I R+G+HLL+LIN+ILDL++IE+GR E+ ++SL + E Sbjct: 613 VQGSSRLTEDE-KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEV 671 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + L + A+EK I + + L + D K +RQ++ NL+ NA+KFTA G V V + Sbjct: 672 VDGLSVLAREKGIALSLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAE-GSVTVRLDA 730 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I ++D G GIA + ++ F Q + + +G GLGL I + GG Sbjct: 731 -EGEEFLIEVEDTGIGIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGD 789 Query: 456 FLIRSKLREGVEVIAILP 473 +RS+L EG LP Sbjct: 790 VSVRSELGEGSVFTLRLP 807 >gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] Length = 1318 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ ++ + ++ A+ + AK FLA+MSHE+RTP+N ILG + + + Sbjct: 583 LTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I+ S ++LL +IN+ILD S+IE G+ + SL ++ ++ L+AQ Sbjct: 639 PAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400 EK IE IDP + + + D + QV++NL NAVKFT G V + + Sbjct: 699 EKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIELLTERDVV 758 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + S+KD G GI + +I + +F Q +I G GLGL I++ ++ GGQ + S Sbjct: 759 LHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSS 818 Query: 461 KLREGVEVIAIL 472 L G + Sbjct: 819 TLGAGSTFAFTI 830 >gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1208 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 10/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R+ AE + AKS FLA+MSHE+RTP+N I+G +E+ + + Sbjct: 534 ITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALDTRL----D 589 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ + S + LL ++N+ILD S+IEAG+ + E + V E + + RA+ Sbjct: 590 PTQRDYLNIVLSSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEALKSISTRAE 649 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-- 400 K + ++ P L +V D +RQV+ NL NA+KFT G V V ++ G Sbjct: 650 RKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAGGDA 709 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D G GI + + +F Q + G GLGL I+ ++ GG+ + Sbjct: 710 LIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGRIWV 769 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S G + R Sbjct: 770 DSTPGVGSTFHFTVRLKRRAEPA 792 >gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC BAA-895] gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895] Length = 918 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 31/372 (8%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 234 DM---LKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRL----TLKTELNTTQRDHLNTIERSANNLLAIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E + +L + +K +E+ I + V D Sbjct: 347 DVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++QVI NL+ NA+KFT G + + V + I I+D G GI E + + Sbjct: 407 LRLQQVITNLVGNAIKFT-ESGNIDILVEKRALSNTKVQIEIQIRDTGIGIPERDQSRLF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q +I G GLGL I Q ++ GG S+ G + L+ Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI----NLDLN 521 Query: 482 PEDNHESTQYKC 493 P ++ +C Sbjct: 522 PNVISDAPPTRC 533 >gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR] gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina loihiensis L2TR] Length = 866 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ ++ ++ ++ AE N +K FLA+MSHE+RTP+NAI+G + + + Sbjct: 184 ISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTEL----T 239 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K YI I S Q LL +IN+ILD S+I+AG+ + L D++ M RA Sbjct: 240 QKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAY 299 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 +K++E + ++ + D + QV++NL+SNA+KFT G ++V V Sbjct: 300 DKDLEFIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFT-EDGEINVAVNLLDSSRDNV 358 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G G+ E + + +F Q + G GLGL I++ ++ GG + Sbjct: 359 LLRISVTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVT 418 Query: 460 SKLREGVEVI--AILPNT 475 S +G LP Sbjct: 419 SAAGQGSTFYIEVELPLQ 436 >gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] Length = 649 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 30 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 89 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 90 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 149 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 150 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 205 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 206 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 265 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 266 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 323 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 324 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 356 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 17/300 (5%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 +F + + I E + A+ ++RAE + AKS FLA++S Sbjct: 253 VWFESTVRPVQNMETGKVQEVVFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVS 312 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPL+ I+G +++ + E Y I + L ++IN+ILD S++EAG Sbjct: 313 HEIRTPLHGIIGMIDLLLDTAL----TEEQASYGRTIGELSRLLSSIINDILDFSKMEAG 368 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLL 376 R EL L +V + + +L++R+++KN++I ID + D +RQV++NL Sbjct: 369 RIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLG 428 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFG 425 NAVKFT G+V + + S Q I D G GI + P + F Sbjct: 429 GNAVKFTEK-GKVALRIAMDSRAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFS 487 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q ++ G GLGL I++ ++ GG+ RS G +P ED+ Sbjct: 488 QADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGTTFWFTMPLLESSAQAAEDS 547 >gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1040 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 111/405 (27%), Positives = 196/405 (48%), Gaps = 4/405 (0%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + A + + + + + + + + V Sbjct: 636 VMSFFASPSLSAAALRSEPEVPPQGDAAETDADLVAEVEELQAVLSAATDGVVLIDREGM 695 Query: 136 YLTIYKSATLLIALSI--SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 ++ ++A L + +A F+ A + + + + D + Sbjct: 696 IRSMNRAAHALFGIGADDAAGRPFVTLLAHESQKPTLEHIETLRTASATAPRDDGREVIG 755 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A F ++ + + C +D I+ + + + R AE +L KS+FL Sbjct: 756 RVAEGGFVPLSVSFGRLPEERGWCAVIRD--ISRAKRVEQELIKARSEAEAASLQKSQFL 813 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A++SHELRTPLNAI+GF++VI E GP+ NE Y EY+ DI RSG H+L+L+N++LD+S+ Sbjct: 814 ANVSHELRTPLNAIIGFADVIATECFGPIGNERYLEYLDDIKRSGHHVLDLVNDLLDISK 873 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEAG+ EL+ A+SL +++ E + ++Q +A + + + + S+ V AD + MRQ+ L Sbjct: 874 IEAGKLELAFEAVSLNEVIGEVVALMQPQANREQVIVRSNLPSSVPPVVADRRSMRQIAL 933 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL+SNAV+FT GG++ V+ ++ + +D+G G++E EI + F Q + + Sbjct: 934 NLVSNAVRFTPAGGQIIVSTSYSPEGDVVVRFRDSGIGMSEDEIEIAMMPFQQVNPGNRR 993 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 +G GLGLP+ +++ + F + S EG V P RVL Sbjct: 994 RGEGTGLGLPLTKALAEANRAGFAMSSTPGEGTLVEISFPPQRVL 1038 >gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 936 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 742 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 743 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 803 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 915 KGSRFWFTIPGVIVTEEM 932 >gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 926 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 793 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 905 KGSRFWFTIPGVIVTEEM 922 >gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] Length = 957 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 708 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 763 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 764 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 823 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 824 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 879 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 880 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 935 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 936 KGSRFWFTIPGVIVTEEM 953 >gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 936 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 742 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 743 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 803 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 915 KGSRFWFTIPGVIVTEEM 932 >gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] Length = 1200 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 162/357 (45%), Gaps = 8/357 (2%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 +L L ++P + K+ + L+ ++ + + + L +Q Sbjct: 404 GVLELGATHEYSPRQIEFLKAVAGNVGLAFHSVQSRIKLQELLEETQAQSEELQSQHSEL 463 Query: 182 MHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 ++ A L + L +SN ++ A ++ +E + Sbjct: 464 ENINSELEAQSQKLLASEEELRVQQEELLQSNQELEERSALLEEKNMLIEQRNIDIQQKS 523 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E+ KS FLA+MSHELRTPLN+IL S+++ +E Y EY + SGQ Sbjct: 524 IELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTE---SEDLDEQYVEYAAVMQSSGQ 580 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LI+EILDLS+IE+G+ L + L +I + ++ A++KN+E+ + + Sbjct: 581 GLLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLPMAKDKNLELKVETEAQAP 640 Query: 360 SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEI 417 + D+ + Q++ NLLSNA+KFT+ G + + V + D G GIA+ ++ Sbjct: 641 QMLQTDKLRLEQILKNLLSNAIKFTST-GSITLQVSGDEAHTKIIFKVIDTGIGIAKDKM 699 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 V +F Q + + G GLGL I++ + GG+ + S +G E +P Sbjct: 700 RLVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLESTEGKGSEFTLTVPV 756 >gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 926 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 793 E-EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 905 KGSRFWFTIPGVIVTEEM 922 >gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans OS217] Length = 950 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 I +LI + + F L V FP+ + A + LD L G L Sbjct: 202 HRAAIAAFVIVLIGVQFNLFFTFRLVKHVN---FPITEMVRVVAKIREGKLDARLDGNLI 258 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEEN 246 L + S + + + + ++E+ D +KRA+E + Sbjct: 259 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNVELDLAKKRAQEAS 318 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 319 QIKSEFLANMSHELRTPLNGVIGFARQLIKTPLHA----SQLDYIKTIDRSATNLLGIIN 374 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S++EAG+ EL + SL + V E I ++ AQ K +E+ ID ++ V D Sbjct: 375 DILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHVSGDA 434 Query: 366 KGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + V T R + D G GI + + + Sbjct: 435 MRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQEYLFQ 494 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G ILP Sbjct: 495 AFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFWFILPL 546 >gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 927 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 8/279 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 239 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 298 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 299 HELRTPLNGVIGFTRQMLKTKLTN----SQADYLQTIEKSANNLLNIINDILDFSKLEAG 354 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L + + E + + A EK +E+ K+DP + + + D ++QV+ NL+ Sbjct: 355 KLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIPAGLVGDPLRIQQVLTNLV 414 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 N++KFT G + V + + ++D G GI+E + + +F Q +I Sbjct: 415 GNSIKFTERGNIDISVELRSQKEDAVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 474 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I Q +++ GG+ + S+L +G L Sbjct: 475 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTL 513 >gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 422 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 6/232 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + + F++++SHELRTPL +I G++E + + + N E ++++G I + Sbjct: 182 QLDKLRREFISNVSHELRTPLTSIHGYAEALLDDDLS--NKELVRKFLGVIESESARMTR 239 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LDL ++E+G + + S +++ ++ + +L+ A++ +E++ K + S+V+ Sbjct: 240 LINDLLDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCE-CKSTVYG 298 Query: 364 DEKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTV 420 D + Q++LNL+ NAVK+T G V V + ++D GPGI E + Sbjct: 299 DFDRLVQLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGIPEDAQKRL 358 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I H SK+ EG Sbjct: 359 FERFYRVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTTFRVYF 410 >gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 881 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 8/279 (2%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 ++ L + I E + + E R AE N AKS FLA+MSHE+ Sbjct: 459 IVVSLSLSAVFLNGRWYAVGLLRDITESKHYQEELLEARHSAEAANRAKSEFLANMSHEI 518 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N ++G ++++ +EY+ ++ S ++LL LIN+ILDLSRIE+G+ E Sbjct: 519 RTPMNGVVGMAQLLR----YTQPTREQEEYLDNLELSCKNLLELINDILDLSRIESGKLE 574 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L + SL ++E + R ++K +++ +D + V D +Q++LNLL NA Sbjct: 575 LEAAVFSLRSCIQEVVSNQASRIEQKGLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNA 634 Query: 380 VKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KFT G ++ +G + + D G G+ E + + SF Q + Sbjct: 635 IKFTEAGSITVSGQISSRQETGCTFRLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYG 694 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I + + GG+ S +G LP Sbjct: 695 GSGLGLAICRRLTELMGGRIWAESTFGKGSAFFVELPFA 733 >gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] Length = 1053 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 10/254 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + ++ + ++ R +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 274 LRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP 333 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +YI IH S LL +IN+ILD S+IEAG+ + L D++ ++ Sbjct: 334 ----KQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSMVTGQ 389 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A EK +E+ +ID ++ V + D + Q+I+NL++NAVKFT G + V V Sbjct: 390 KAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQ-GEITVHVTKKPYSE 448 Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I ++D G G++ + + ++F Q + G GLGL I + ++ GG Sbjct: 449 EKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGDI 508 Query: 457 LIRSKLREGVEVIA 470 + S + +G + Sbjct: 509 HVESAVGKGSQFKF 522 >gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1045 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 833 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP +P + + Sbjct: 890 GSRFWFTLPFQPKKELLPSEEQK 912 >gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] Length = 1051 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205 +A +I A + L + V +S ++V T ++ ++ L + ++ Sbjct: 285 LAQTIKATTQQRLVFIVIMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE E + AKS FLA+MSH Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ +A+EK IE+ I P+ + D+ +RQVI+N +S Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + +T ++ I S++D+G GI E + + F Q + Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG + S+ G L Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618 >gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] Length = 886 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 170/354 (48%), Gaps = 17/354 (4%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 + + +++ ++I++ + F++ + P+ + + + L + Sbjct: 282 AVLHQSGKAISLITGLIVIISVISLPILIFVVVRNLL--LNPIELLGAASHRVGDGDLAV 339 Query: 188 SLAGMLATALSF----FTYITYHLFKSNVKILSCQAEKDDLIAELEVA----KSLSDETR 239 SL + F ++ + ++ + +D + A S + Sbjct: 340 SLPAHTDDEVGILFNDFNHMVNQIRHYQQQLEEYKHHLEDKVESRTQALESMNSQLELAI 399 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +AE+ N KSRFLA+MSHE+RTPL AI+GF+E + + K+++ I R+ + Sbjct: 400 TQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKIVND----KQHLSTILRNSK 455 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN ILDLS+IEA + + +++++++ +V + ++ AQEK +E+ D + Sbjct: 456 HLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLELNIIFDLPIP 515 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEI 417 +++ D ++Q+++N+ +NAVKFT G V + V + + I D G G++E +I Sbjct: 516 QTIYTDVTRLKQILINVANNAVKFTEQ-GHVSICVHYHAKSNLIEFVITDTGIGMSEHQI 574 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 V F Q G GLGL I++++ GG + S++ EG E Sbjct: 575 SRVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGSEFSIS 628 >gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] Length = 803 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 157/342 (45%), Gaps = 14/342 (4%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + + + + + + L + Sbjct: 335 MFRKAFSLESIRESVAAGETVIVRELRRLAPDGVYRWTEMIGILVISAAVGER------T 388 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 ++ + DD+ E E ++ + AE+ N AKS FL+ MSH++RTP+NAI+G + + Sbjct: 389 VVLTFRDVDDIRKEEERKRAALLDALNLAEQANNAKSDFLSRMSHDIRTPMNAIIGMASI 448 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 E + E + I I S LL LIN+ILD+S+IE+G+ + L ++R Sbjct: 449 AEANIRDTVKTE---DCIHKIQASAHFLLALINDILDMSKIESGKMSIIREPFDLCALLR 505 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E +++ +A+EK + + + + + D + Q+++NLLSNAVK+T GG++ + Sbjct: 506 ELEVIIDAQAREKGQQFSVLMPAHMEAEYYGDSLRLNQILMNLLSNAVKYTPDGGKITLR 565 Query: 393 VGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V +G+ ++DNG G++E + + F Q + ++G GLGL I +++ Sbjct: 566 VNEDRKKGKKSVMRFEVEDNGIGMSEAFLKHIYEPFRQDERKEEKRQEGTGLGLSITRNL 625 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + GG I S+L +G LP + PE + E+ + Sbjct: 626 VHLMGGSISISSELGKGTCFTVELPFVQEEGNWPEASSENKK 667 >gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 1089 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 10/254 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ AE AKS FLA+MSHE+RTP+N ILG ++ + + + + Sbjct: 699 QKELVIAKEMAEASEEAKSEFLANMSHEIRTPMNGILGMISLLSESDL----TKEQMDML 754 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG L+ ++N+ILD+S+++AG+YEL + + + + A EK I + Sbjct: 755 ETIQSSGDILMTILNDILDISKLDAGKYELDIRDFDIRNCIENTTFLFSTLASEKGINLT 814 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIK 406 I + + D +RQ+++N LSNA+KFT G V + VG + IS+ Sbjct: 815 STISSVVPLFLKGDVTRIRQILVNFLSNAIKFTER-GEVKIEVGAIKKSDRDVSLVISVI 873 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + +F Q + G GLGL I ++ G+ + S+ +G Sbjct: 874 DTGIGIHSDAQENIFEAFSQADSSTTRVYGGTGLGLSICSKLIEIMDGEVKLESEPGKGT 933 Query: 467 EVIAILPNTRVLNF 480 + LP + Sbjct: 934 NITFSLPLEIGVES 947 >gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 945 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 152/400 (38%), Gaps = 28/400 (7%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 + + + ++ R L+ + +G ++ L Sbjct: 132 IAAWVRIEFSLAAMQEELTREARHLFLLSVLFMGATISVAQLGIRRMSGLFRE------- 184 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + V + S H + + Sbjct: 185 -----------TAEKLQKTLHTLHCVSEQAPSGDAASDHDNSHASPSCKGDLEQVVDLVE 233 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + Q+ D L + + + ++ AE N AKS+FLA+MSHE+RTP+ Sbjct: 234 TTTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPM 293 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N +LG +E++ + + + +HRSG L+++INEILD S+IEAG+ +L Sbjct: 294 NGVLGMTELLLSTAL----TQKQRSLTETLHRSGTGLMDIINEILDFSKIEAGKLKLERI 349 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 L V + + + A K++E+ + P + +V D +RQ++LNL+ NA+KFT Sbjct: 350 EFGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFT 409 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V VT+ + I+D G GI E + +F Q + G G Sbjct: 410 -QSGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTG 468 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 LGL I + + GG + S +G + + Sbjct: 469 LGLAIVKQLALLMGGDVGVDSVSGQGSTFWFTVELEQAAQ 508 >gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1321 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 11/278 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + ++ AEE AKS FLA+MSHELRTP+N I+G + + Sbjct: 921 HDIEVRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRTPMNGIIGMT----GLLLELE 976 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I S LL L+N+ILDLS+ EAG+ +L D V + + +L+ Sbjct: 977 LTRDARNFGETIRDSAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLLETT 1036 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A KN+E+ +I L S+ D +RQV+LNL+ NA+KFT G V V+V S + Sbjct: 1037 ANSKNLELLSEIPEKLPDSLLGDAGRLRQVLLNLIGNAIKFT-ESGHVKVSVSKISDDNE 1095 Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I D G GI+E P + SF Q ++ G GLGL I++ I+ GG+ Sbjct: 1096 KEIYRFQIMDTGIGISEKAKPKLFQSFEQADNSLARRFGGTGLGLKISKEIVTLMGGEIG 1155 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDN-HESTQYKCY 494 + S EG LP + + IP H++ Q K + Sbjct: 1156 MESTEGEGSTFWFTLPLKKETSQIPSPTKHKTGQKKKH 1193 >gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1792 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I R+ Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL++IN+ILD S+IEAG+ ++ L ++ + M +A K IE+ + P+ Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV++NL++NA+KFT G V +++ + S++D+G G+ Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I + ++ GG+ + S+L G Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTFYFT 1265 >gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] Length = 796 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 140 YKSATLLIALSISALSN----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + ATL + +S + N +L F + +++L + AI+ V+ + Sbjct: 125 FPLATLTVQSDLSMILNDFEERVLLLLAFEAVKIFLLSLVSLAIVYRLVVKRLMTMSSQI 184 Query: 196 AL-------SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 F T +K + L + I + + ++ AE N Sbjct: 185 NEQQVEDNKPRFLTPTDSTYKDEISTLENSY--NQSIERIRQQYQELIKAKETAEVANRN 242 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N I+G S ++ M + KEY+ ++ S LL+LIN+I Sbjct: 243 KSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----PKEQKEYVNMLNTSSLTLLDLINDI 298 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEAGR EL + + ++ I + +++A++K + +IDP + V D Sbjct: 299 LDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLEIDPKIPTMVIGDGTQ 358 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVL 421 +RQV+ NL+ NA+KFT G V +++ + D+G GIAE + +V Sbjct: 359 LRQVLNNLVGNAIKFTER-GHVTLSLRLEKVIEPEQKLRVRFEVADSGIGIAEDKQKSVF 417 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q + G GLGL I I+ G + + S +G + Sbjct: 418 DKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSIEGKGSTFYFV 467 >gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] Length = 1406 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 32/389 (8%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L E + I +L + + + F + FL +++ + I++ Sbjct: 821 GLGEAPPLSLAIFPIVSEDRVLGVIELGSYGTFREIHLNFLRQLVSLLSATITTILANSK 880 Query: 185 LDISLAG---MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL---EVAKSLSDET 238 + LA + + + K ++ L ++ E+ + Sbjct: 881 TEYLLAQSQQLTTALQERSNELQRQQEELRRKNAELHSKAGQLASQNRAIELQNRQIERA 940 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R+ E+ + KS FLA+MSHELRTPLN++L + ++ + L E+ Sbjct: 941 RRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNLT-PKQVEFA 999 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+++G LL LINEILDLS++EAGR EL+ S +S+ +V + A EK + Sbjct: 1000 QTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEKGLAFA 1059 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG------------RVHVTVGWTSG 398 ++ P + +W DE+ ++QV+ NLLSNAVKFT+ G + V Sbjct: 1060 VEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDTFTDPD 1119 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G GI E ++ + +F QG G GLGL I++++ GG+ + Sbjct: 1120 EVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIRV 1179 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S + EG +LP +PE E Sbjct: 1180 SSTVGEGSTFTLLLPVR-----LPEGTSE 1203 >gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 914 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 13/266 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T N Sbjct: 506 ITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----NE 561 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y + + + LL LINEILDLS+IE+G E + + + L + +E R Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403 + +E+ + + D+ + QVI NL+ NA KFT G H++ G+ G+ Sbjct: 622 K-GVELIYEPSDENIVIDGDKNRIFQVISNLIGNAFKFTTAG---HISYGYHQEGKYVAF 677 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA ++ V F + + QG GLGL I ++I+ GG + S++ Sbjct: 678 HVTDTGMGIAPDKVDRVFERFVKV----NNFAQGTGLGLSICKTIIERLGGNISVTSEVG 733 Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489 +G +LP E E+ Sbjct: 734 KGTTFTFVLPLEAASKTEAEKKEENN 759 >gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 810 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 12/296 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + ++ + ELE A + + ++ A+ + +KSRFLA++SHE+ Sbjct: 255 ANLKRNREDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEI 314 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N +LG ++ + +EY I SG+ L+ +IN++LD SRIE+G+ + Sbjct: 315 RTPMNGVLGMVSLLLETDL----QAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLK 370 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 + + + ++ E + RA++K + + + + + D +RQV+ NLL NA Sbjct: 371 MEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNA 430 Query: 380 VKFTAIGGRVHVTVG-WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT G + +TV G +S + D G GI + +P + F Q + Sbjct: 431 VKFTLK-GTITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFG 489 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL---NFIPEDNHEST 489 G GLGL I + ++ GG S+ G + + V PE +HE+ Sbjct: 490 GTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFTVALSVVPDTGEPEPEPSHEAA 545 >gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 1780 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + K+A++ N+AKS FLA+MSHE+RTP+ A+LG+++++ +G Sbjct: 1375 FTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIRTPMTAVLGYTDLL----IGMEQE 1430 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + EY+ +I R+G LL +IN+ILDLS+IEAG+ E+S+ + SL +++ + M+++RA+ Sbjct: 1431 QEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEISQESFSLNEMLADLQSMMRVRAE 1490 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSGRGQ 401 EKN+E + L + D K +RQ++LNL+SNA+KFT G +V + + + Sbjct: 1491 EKNLEFGIEFISDLPERIETDPKRLRQILLNLISNAIKFTETGSVKVVINFLREKADAVL 1550 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G GI + + SF QG ++ G GLGL I+Q + G + SK Sbjct: 1551 KFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGTGLGLAISQRLAGMLNGNISVSSK 1610 Query: 462 LREGVEV--IAILPNTR 476 EG LP Sbjct: 1611 PGEGSTFSCTINLPVRE 1627 >gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 1045 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLRDDNTLWFY 833 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP +P + + Sbjct: 890 GSRFWFTLPFQPKKELLPNEEQK 912 >gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 894 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 12/268 (4%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + L ++RAE + AKS FL+ MSHE+RTPLN I+G E+ + P Sbjct: 352 EKRSNELLRLEKERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKNHIDEPG---RM 408 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + + I S HLL+LIN+ILD+S+IE+G+ EL L ++R + ++A + Sbjct: 409 RNCLDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQ 468 Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402 I+ + + + D + Q++ NLLSNAVKFT G V++ + Sbjct: 469 IDFQIFLRGEVTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLR 528 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GIA I + F Q + I G GLGLPI +S GG + S++ Sbjct: 529 FEVKDTGRGIAPENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEV 588 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + P+D ++ Q Sbjct: 589 GTGSVFTVDLPF----DCAPDDVYKDAQ 612 >gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 417 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 8/239 (3%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 L + F++++SHELRTPL +I G++E + + + ET ++++ I + L Sbjct: 183 LELMRREFVSNVSHELRTPLTSIHGYAETLLEYDLS--DEETVRKFLRIIEGESARMTRL 240 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL ++EAG +L + L ++ I ++ A+E + I++ ++ + V D Sbjct: 241 INDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEELGVSIYEDMERGV-FVEGD 299 Query: 365 EKGMRQVILNLLSNAVKFT--AIGG--RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + Q+ LNL+ NAVK+T G V + V +T+ + ++D G GI E + Sbjct: 300 FDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRV-YTANNYAVLEVEDTGIGIPEEARKHI 358 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL I + I HGG + S+ G LP +V+ Sbjct: 359 FERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLPLKKVIE 417 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 10/271 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + L + I + R A E KS FLA+MSHE+RTP+N Sbjct: 557 RAVRDQDGKLLYYEGTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMN 616 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+G + ++ + P +++ I S LL +IN+ILD S+IEAG E Sbjct: 617 GIIGMTGLLLDTELSP----KQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEID 672 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 L +V + +L RA + IE+ +++ D +RQV+ NL+ NAVKFT Sbjct: 673 FQLGTVVEGSVELLAARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTD 732 Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V V S+ D G GI+ + F Q + G GL Sbjct: 733 K-GEVVVRANCQENAETHTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGL 791 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL I + ++A GG+ + S+ +G Sbjct: 792 GLAICKQLVARMGGEIGVTSEAGKGSTFWFT 822 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 21/411 (5%) Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV---------- 127 + + +++ ++ + L + A L Sbjct: 243 LYFISHLLDVTEARRTAARLTLHANTLEALLRLGRMRGANLAALGEFVLSRGVALTASQS 302 Query: 128 -EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 P A AL++ L + + S + + ++S Sbjct: 303 GLAAMSDPATGRFAVLAAGSEALAVFGLGEGTREFELRDSPSLAMAVGDLRPVVSDTPCS 362 Query: 187 ISLAGMLATALSFFTYITYH---LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + +F + ++ L+ E + + R++AE Sbjct: 363 RLATALRGDGQTFILAVAGRAMPYGDDDINRLTLLGEGVLRHVKERRREEDLTTARRQAE 422 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AKS FLA+MSHE+RTPL+ I+G +++ T+ +E + I S + LL Sbjct: 423 AASQAKSGFLANMSHEIRTPLSGIIGLTQM----TLTQNPRPEIRENLELILDSSRSLLG 478 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 ++N+ILD S+IEAG+ E L D + + Q A++K + + +IDP + V Sbjct: 479 IVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVPAMVH 538 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTV 420 D + QV+ NL+ NA+KFT G V +++ S++D G GI E + + Sbjct: 539 GDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPGDPMLVSCSVRDTGIGIPEDRLHEL 598 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q G GLGL I++ ++ GG + S +G Sbjct: 599 FQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESVPGQGSTFTFT 649 >gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3] gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3] Length = 759 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 165/337 (48%), Gaps = 6/337 (1%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 ++ A+ P V + +S + + A ++ Sbjct: 416 IAALAIKAEHAPTDGRAGLREVELHDGRWLQLSERFTSEGGSVVTAADITAIKREETERR 475 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + A+ + L + RAE N AKS FLA+MSHELRTPLNAI Sbjct: 476 RAVEDLSRTVAQLEASQQMLSQLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAIN 535 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFSE++ E GP+ E YK Y GDI +SGQHLL+LIN+ILD+++IEAG+ L +SL Sbjct: 536 GFSEIMAAELFGPIG-EKYKGYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSL 594 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 D+ + +++ + E + + + L + AD +G++QV+LNL+SNAVKFT GG Sbjct: 595 RDVCEDAARLMRGKVLESGLTLEIE-AGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGT 653 Query: 389 VHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V +++ G ++ D G GIA + + F Q QG GLGL + Sbjct: 654 VTLSLTPFKGAAGEDRVRVACADTGIGIAPEHMVRLARPFEQVEGQHSKTTQGTGLGLAL 713 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +S++ HGG+ I S+ G V LP R + + Sbjct: 714 TKSLIEMHGGRLNIESEPGVGTVVSFDLPTRRPVQTV 750 >gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 865 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 145/255 (56%), Gaps = 9/255 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + AE+ N AKS+FLA+MSHE+RTP+ +ILG++++I + + +E + ++ Sbjct: 453 ERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI----DEDTRSHV 508 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I R+G LL LIN+ILDLS+IEA E+ + +++LI ++ + + ++Q+RA EK++EI Sbjct: 509 ATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIMQVRAAEKDLEIR 568 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKD 407 + + AD K +RQ+++NL+ NAVKFT G V V V + + D Sbjct: 569 VDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEA-GHVRVAVRAEQSDRRTRVHFDVVD 627 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI++ + + F QG +I G GLGL I+Q ++A GG+ RS++ EG Sbjct: 628 TGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSRVNEGSC 687 Query: 468 VIAILPNTRVLNFIP 482 + +V P Sbjct: 688 FSFCIDAGQVDCTSP 702 >gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 933 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + + I ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524 >gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 888 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 10/296 (3%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 S + ++ A + ++ + +D+L A ++ + + Sbjct: 90 SRGIRLVAHADNAIALVYRLPRWPDEPLLQQMQRQFAEPTRDELFAVMQAKNQELEVAYE 149 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE AKS FLA+MSHE+RTP+NAILG S + + P +Y+ I RS QH Sbjct: 150 LAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRLDP----QQFDYVSKIQRSAQH 205 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD S+IEAG+ +L L ++ ++ +A+ K IE+ ++D L + Sbjct: 206 LLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDT 265 Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEG 415 + + D + Q+++N +NAVKFT G + V V + Q + S++D G G+++ Sbjct: 266 LLYGDPLRLGQILINYANNAVKFTEQ-GEILVKVSCLEKQPQEVLLHCSVQDTGIGMSQE 324 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + SF Q + G GLGL I++ + GG+ ++S+ G Sbjct: 325 QQQRLFQSFQQADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTFWFT 380 >gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 662 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 138/283 (48%), Gaps = 9/283 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 L ++T L + L A+ EL D +K AE LAK FL Sbjct: 128 IGTLCAVDHVTKELNEDQRNALRIVAKHVISQLELGTKNVQLDAQKKIAERAVLAKDSFL 187 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTPLNAI+GF++++ + N ++YI + +G++LL ++N+ILDLS+ Sbjct: 188 ANMSHEIRTPLNAIIGFTDLLAQTKL----NAVQRDYINSVQIAGENLLLIVNDILDLSK 243 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 +E+G + +L + ++ +L+++ ++ V DE + Q+++ Sbjct: 244 MESGNLTIEAVPFNLKNTLKHVYNLLKIKVPKEVEFNLFLDADMPEMVIGDEGRLNQILV 303 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G V V+V + S+KD G GI ++ T+ F Q Sbjct: 304 NLIGNALKFTHE-GEVTVSVKMIEETETHYSLKFSVKDTGIGIPPKKLKTIFERFTQAED 362 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ + ++S+ +G E ++ Sbjct: 363 STTRKFGGTGLGLNIVKQLIELQNAEINVKSEQNKGSEFFFVI 405 >gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 561 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 3/273 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L + +A+ AEL + E+ + AKS+FLA+MSHE RTP Sbjct: 287 ARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTP 346 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILG++ ++ G + T K + I +G+HLL +INEILD++RIEAGR L+ Sbjct: 347 LNAILGYTNMLLQGVSGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNL 405 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S +L ++++E + L + + + P L V +D + ++Q++LNLLSNA+KFT Sbjct: 406 SDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFT 465 Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + V + IS+KD G GIA+ + F Q + A G GLGL Sbjct: 466 HE-GSIQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGL 524 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + + GG+ ++S L +G LP Sbjct: 525 SICRRLATMLGGRITVQSALGQGSTFTLHLPRR 557 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 5/254 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + +++AEE N KS FL +SHELRTPL +LG ++ P + Sbjct: 313 ITERKAAEFALIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLP-DA 371 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + DI SGQHLL LIN++LDLS+IEAG+ + + +S+ + ++ I +Q+ A Sbjct: 372 EEIADIATDIEDSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAH 431 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 EKN+ I +ID V+AD ++Q++LNLL NA+KFT G + V + + + Sbjct: 432 EKNLTIETEIDD--IEVFADPIRLKQILLNLLGNAIKFT-ENGFIKVKIKPMAHQ-VCFF 487 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E ++P + +F Q + G GLGL I + ++ H G+ ++S L + Sbjct: 488 VEDCGCGIDEKDVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLLGK 547 Query: 465 GVEVIAILPNTRVL 478 G +P V+ Sbjct: 548 GSVFSFSIPKNSVV 561 >gi|260903020|ref|ZP_05911415.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037] gi|308108337|gb|EFO45877.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037] Length = 785 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 134/271 (49%), Gaps = 7/271 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+ S + +AE AKS FLA+MSHELRTP+N +LG S++I ET P+ Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE+I I SGQHL+ ++N+ILD S++E + EL E+ L ++ +Q Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQPLID 361 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK+IE+ + D P+ + D +RQ++ NL NAVKFT G V + S Q Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNSEDKQLL 420 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GIA + V SF Q + G GLGL I + + GG ++S Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G + I LP + P H Q + Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511 >gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 1513 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 14/279 (5%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + Q L + +A+S++ + A++ N AKS FLA+MSH Sbjct: 816 LIYAVARDISDRVETEARLQEANRRLEEQTALARSMALQ----ADQANRAKSDFLANMSH 871 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N ILG + ++ + P + + + S ++LL L+N+ILDLS+IEAGR Sbjct: 872 EIRTPMNGILGMAALLLDTDLTP----EQRHFGEIVQASAENLLGLLNDILDLSKIEAGR 927 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L E L + + L +AQ K +E ++P + ++ D +RQV+ NLL Sbjct: 928 LALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRGDPGRLRQVLTNLLG 987 Query: 378 NAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G V V S S++D G GI ++ + F Q + Sbjct: 988 NAVKFTHR-GEVVVRARRVSESPERVQVRFSVRDTGIGIPADKVDLLFQKFTQADASTTR 1046 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+++++ GG+ + S+ G E L Sbjct: 1047 HYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTL 1085 >gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B] gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B] Length = 1316 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 147/302 (48%), Gaps = 7/302 (2%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 I +S +A LS I +++S V + +A + +L ++ + Sbjct: 625 PIAVSPPWWLSQLAYIAYVLSALALIALLMWRSRVNLAQAEARERELTQRVQERTLDLEL 684 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + AEE N AKS FLA MSHE+RTPL+ ++G +E++ + P + + S Sbjct: 685 ATREAEEANRAKSEFLAVMSHEIRTPLHGMIGMNELLIKTDITP----QQRRFTKAALNS 740 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ LL+LINEILDL++IEA R E+ E+ LI+++ E + AQ+K + I+ + Sbjct: 741 GKTLLHLINEILDLAKIEADRMEVEETDFDLIELIDEVCYLQGEPAQKKGLAIYHLPEAG 800 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 ++ D + +RQ++ NLL NA+KFT G + V V T I+++D G GI E Sbjct: 801 IANRYRGDSQKIRQIVTNLLGNAIKFTDR-GHITVRVQRTIDDTISIAVQDTGIGIHEEV 859 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEVIAILPNT 475 + F Q + G GLGL I ++ GG+ I S G V LP Sbjct: 860 RDRIFEKFTQADASTTRKYGGTGLGLTICRNFATLLGGKLDILESGDGTGTLVEVELPLM 919 Query: 476 RV 477 V Sbjct: 920 PV 921 >gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 938 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 9/263 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E K A+E + AKS FLA+MSHE+RTP+N +LG ++++ + +E +Y+ I Sbjct: 543 LIEAMKAADEASRAKSEFLANMSHEIRTPMNGLLGIIDLLDHTNL----DEEQSQYLEII 598 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SG LL++I +ILD S+IEAG+ +L+ + + + + + I + AQEK+I + I Sbjct: 599 KNSGSSLLSIIKDILDYSKIEAGKMDLNPTLGNPAEELEKQIQIFYGLAQEKSITLKTDI 658 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409 + ++ D + QVILNL+ NA+KFT G+V V++ I +KD+G Sbjct: 659 GKAAYGLFETDFDRINQVILNLVGNALKFTPQNGQVTVSMDAEQIENELHYLKIQVKDSG 718 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E IP++ F Q + + QG GLGL IA+ I+ GG+ I S + EG E Sbjct: 719 IGIPEKHIPSLTDPFFQVESSSTRSYQGTGLGLAIAKKIVELMGGELNINSTVGEGSEFS 778 Query: 470 AILPNTRVLNFIPEDNHESTQYK 492 + + L E +S+ + Sbjct: 779 FSVLLKKDLKAQEEKVQKSSDER 801 >gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 639 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 11/254 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +IA+ + ++ AE+ N AKS FLA MSHE+RTP+N ++G +++I + Sbjct: 240 IIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL---- 295 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E ++Y+ I +SG LLN+IN+ILD S+IE+GR EL E SL + E + M+ +A Sbjct: 296 DEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILPKA 355 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 EKNIE+ + + V D +RQV++NLLSNA+KFT G V ++V + G Sbjct: 356 LEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTP-NGAVSISVQCLNHEGNP 414 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G G+ E ++ + F Q + +G GLGL I + ++ GG Sbjct: 415 PLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDIWY 474 Query: 459 RSKL-REGVEVIAI 471 L G Sbjct: 475 ERNLNGSGSVFAFT 488 >gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 926 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 677 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVET----EEL 732 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 733 AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 792 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 793 E-EVELVFDGHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 848 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 849 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 904 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 905 KGSRFWFTIPGVIVTEEM 922 >gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185] gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 933 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + + I ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524 >gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] Length = 2332 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 14/292 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A + + +N ++ Q E E AK E + E+ Sbjct: 1825 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1884 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G N+ EY+ I LL LIN Sbjct: 1885 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTNLNKEQDEYVESIRVCADTLLTLIN 1940 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ + + +D V D Sbjct: 1941 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2000 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + + D G GI E + + Sbjct: 2001 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2060 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG + S G V L Sbjct: 2061 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHL 2112 >gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223] gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 933 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + + I ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524 >gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329] Length = 1051 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 164/338 (48%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205 +A +I A + L + V +S ++V T ++ ++ L + ++ Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE E + AKS FLA+MSH Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ + +EK IE+ I P+ + D+ +RQVI+N +S Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKVKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + +T ++ I S++D+G GI E + + F Q + Sbjct: 521 NAVKFTERGSVELSITTLESNESEAVIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG + S+ G L Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618 >gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1] Length = 935 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 182 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLQGNLI 238 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 239 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 299 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 354 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + E I ++ AQ K +E+ I P++ V D Sbjct: 355 DILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDS 414 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + + + + D G GI E + + Sbjct: 415 MRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQ 474 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 475 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 526 >gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195] gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 933 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + + I ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524 >gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 972 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 I +LI + + F L V FP+ + A + LD L G L Sbjct: 224 HRAAIAAFVIVLIGVQFNLFFTFRLVKHVN---FPITEMVRVVAKIREGKLDARLDGNLI 280 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRAEEEN 246 L + S + + + + ++E+ D +KRA+E + Sbjct: 281 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNVELDLAKKRAQEAS 340 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 341 QIKSEFLANMSHELRTPLNGVIGFARQLIKTPLHA----SQLDYIKTIDRSATNLLGIIN 396 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S++EAG+ EL + SL + V E I ++ AQ K +E+ ID ++ V D Sbjct: 397 DILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHVSGDA 456 Query: 366 KGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + V T R + D G GI + + + Sbjct: 457 MRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQEYLFQ 516 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G ILP Sbjct: 517 AFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFWFILPL 568 >gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 655 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 147/280 (52%), Gaps = 8/280 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + I+ L K + I + + A+ + +K AE N AKS F+A+M Sbjct: 219 QILWIEISNSLVKDRNGSPLYFVVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVANM 278 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLN ++GF+E++ + KEY+ + S LL +IN+ILD+S+IEA Sbjct: 279 SHEIRTPLNGVIGFNELLMTTNLDS----DQKEYVKNAISSAHGLLGIINDILDISKIEA 334 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ L+E+ +L IV++ + +LQ RA+EKNI++ +++P L + D +RQ+++NL Sbjct: 335 GKLVLNETISNLKHIVKDSLGVLQWRAKEKNIQLDFEVNPKLPEWIVVDATRLRQILINL 394 Query: 376 LSNAVKFTAIGGRV-HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L NAVKFT G + + SIKD G GI E P + SF QG Sbjct: 395 LGNAVKFTEKGSVILKIDSEIAENEKIKLNFSIKDTGIGIPESHKPNLFQSFWQGESNST 454 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I +S++ GGQ S+ +G E + Sbjct: 455 RRFGGTGLGLRITKSLLDLMGGQIDFSSEEGKGTEFRFSI 494 >gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium TW-7] gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium TW-7] Length = 1107 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 6/252 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + ++ + AEE AK F+A+MSHE+RTP+N+I+GFS+++ + Sbjct: 515 ITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLNN--- 571 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ ++ + + LL L+NE+LD +++E G+ + SL ++ I L A+ Sbjct: 572 -EQQKHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLEAK 630 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K++ + I S+ + + D +RQ++ NL+ NA+KFT G V +TV T + Sbjct: 631 KKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKFT-EHGSVTITVSTTQNGHLFF 689 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + + + F Q G GLG I++ ++ GG + S++ Sbjct: 690 EVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEVN 749 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 750 KGTCFYFSLPLK 761 >gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] Length = 919 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 14/295 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 ++ H + I +E + + ++EV D RK+A++ KS FLA+MSH Sbjct: 241 MAMAMSKHHQEMQESIDLATSELRETLDQMEVQNIELDLIRKKAQQAAKVKSEFLANMSH 300 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ++GF+ + M + +Y+ I RS +LL++IN+ILD S+IEAG+ Sbjct: 301 ELRTPLNGVIGFARQLLKTKMTS----SQVDYLETIERSAANLLHIINDILDFSKIEAGK 356 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 L L D + E + +L A EK +E+ ID +++ V D ++Q++ NL+ Sbjct: 357 LMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLIDANVTQSVLGDAMRLQQILTNLIG 416 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + V + + + ISI D G GI++ + + +FGQ +I Sbjct: 417 NAIKFTQQ-GDIEVKIQQVADKKGLITLKISISDTGIGISKQQQAQLFCAFGQADSSITR 475 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR----VLNFIPED 484 G GLGL I Q ++ G+ S +G + + +L+ +P + Sbjct: 476 QYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGSTFWFNIKFEKNSHELLSILPTE 530 >gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 490 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 130/275 (47%), Gaps = 8/275 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + R++AEE KS FLASMSHE+RTP++ I G +++ + Sbjct: 81 QQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASSEL-- 138 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E K Y+ S Q LL+++N+ILD S+IEAG+ ++ E+ +++ + + Sbjct: 139 --TEEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAI 196 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399 QEK + + D V D+ RQ++ NLL NAVKFT G V ++ + Sbjct: 197 MCQEKGLALHFHFDLQGFHVVQGDDVRFRQILSNLLGNAVKFTDSGCIEVTTSIQQNADN 256 Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + S+KD G GIA+ + T+ F Q ++ G GLGL I++ + GG Sbjct: 257 SLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMGGDIK 316 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S G + + + + H S+ K Sbjct: 317 LESVKGHGSTFSFTIMLEQADEALLKPVHHSSGVK 351 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 11/290 (3%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 +A ML + +L + ++ E D LE A ++ R ++E Sbjct: 58 LMAAMLGERDARLAEQRTYLERLEQEVQDRTREVRDYAVTLETANKALEQARAQSEIAAR 117 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHE+RTP+N I+G +E++ + +EY+ + S + LL L+N+ Sbjct: 118 LKSEFLANMSHEIRTPMNGIIGMTELVLDTHLST----EQREYLDLVKSSAESLLGLLND 173 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILD S+IEAG+ L SL +I+ + L L+A K++ + +I P + ++ D Sbjct: 174 ILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLTWEILPDVLDTLVGDPT 233 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVL 421 +RQ+++NL+SNA+KFT GG + V Y S+ D G GI + + Sbjct: 234 RLRQIVVNLVSNAIKFTERGG-IAVRAQAIVEADLRQCVLYCSVTDTGIGIPPEKRHVIF 292 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q + G GLGL I ++ GG+ + S+ G Sbjct: 293 DPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESEPGLGSTFHFT 342 >gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 763 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ ++++ + Q +K + +T A+ N +KS FL++MSHELR Sbjct: 340 HLAVAIYQAQLYA-QVQEQKKTFEQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELR 398 Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 TPL I+G S + L + ++Y+ I SG+HLL +INEIL+ S++EAG+Y Sbjct: 399 TPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKY 458 Query: 320 ELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 LS SL + L+ A ++ N+++ +I+P + +AD + ++Q++ +LL+ Sbjct: 459 VLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLN 518 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GG V + + W G ++D G GIA+ +IP + SF Q + + G Sbjct: 519 NALKFTPEGGTVILRI-WREGNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGG 577 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + ++ HGG + S L+EG LP Sbjct: 578 TGLGLALTKQLVELHGGTIEVESILQEGSIFTVRLP 613 >gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] Length = 591 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 6/281 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + ++ + E I+ + A+ + RAE+ + AKS+FLA+M Sbjct: 165 LLLEAKVKERTHNLRIREEELRDE----ISVRKDAEKELIAMKLRAEDASKAKSQFLANM 220 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPL AI+GF+E++ + + Y Y+ I S Q+LL +IN ILD+S+IE Sbjct: 221 SHEIRTPLGAIMGFNEILLENSKSLELPDYYPLYLNYIDNSLQYLLKVINNILDISKIEE 280 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 +++L + L + + + A+EK I K ++ V D ++QVI+NL Sbjct: 281 RKFKLKVEDVDLEKFFKNIVYTYKHLAEEKKINFIYKNTELIAKYVKIDPVKLQQVIINL 340 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 L NA KFT + V +TV T + I ++D G GI + T+ F Q + + Sbjct: 341 LDNAFKFTPVNKLVEMTVK-TDDQKLIILVRDEGIGIPKEYQETIFKVFEQVDDSNTRSY 399 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 QG GLGL I++ + GG + S + +G LP Sbjct: 400 QGTGLGLSISKKFIELMGGIISLESGINQGSMFSINLPLKE 440 >gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1062 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 155/311 (49%), Gaps = 9/311 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 A I S + L LA +T L ++ +L+A+ + Sbjct: 510 AYIITPIFSGYQLWGLLAVYQNYHPRIWTTAEIRTVTQIGSQLGVAVQQAELLAKTQEQA 569 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + ++ A+ N +KS FLA+MSHELRTPLNAILGF++++ +++I Sbjct: 570 RQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTN---QNLAPENRQHIE 626 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+RSG+HLL LIN+IL++SRIEAGR L + L + ++ + +LRA KN+ + Sbjct: 627 IINRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLHLIF 686 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDN 408 + L + ADEK +RQV++NLL NA+KFT G V V V + ++D Sbjct: 687 ERPKGLIRHIKADEKKLRQVLINLLGNAIKFTDE-GSVTVRVSHQNRDASDLLQFEVEDT 745 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA + + +F Q + A +G GLGL IAQ + G + +RS L G Sbjct: 746 GLGIAPEDCEGLFEAFAQTETGLN-ASEGSGLGLAIAQQFVKLMGDEITVRSCLNRGSTF 804 Query: 469 IAILPNTRVLN 479 +P R + Sbjct: 805 SFTIPVQRSED 815 >gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4] Length = 790 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 111/293 (37%), Positives = 161/293 (54%), Gaps = 12/293 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL---EVAKSLSDET-------RK 240 G L + + T + H + + A DL + E K+ E ++ Sbjct: 478 GGLVSVGTDITLLKRHQERLREQERRLMATIGDLSSSQKKLERQKAELSEANEKYLAEKQ 537 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAE N AKS FLA+MSHELRTPLNAILGFSE++ GP+ + Y EY DIH SG+H Sbjct: 538 RAEAANKAKSEFLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKYGEYARDIHDSGKH 597 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LLN+IN+ILD+S+IEAG L + ++ E + + + A++KNI I Q+I L + Sbjct: 598 LLNVINDILDMSKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKNIAIEQRIASGL-A 656 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + AD + ++Q++LN+LSNAVKFT GGR+ V + + D G GI + I + Sbjct: 657 MTADRRALKQILLNILSNAVKFTNEGGRISVRAHKI-DGAVRLLVSDTGIGIPKQAISKI 715 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ G GLGL I++S++ HGG IRS+ +G V +P Sbjct: 716 GQPFEQVQSQYAKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTVVSINVP 768 >gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 845 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/380 (27%), Positives = 176/380 (46%), Gaps = 37/380 (9%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 + W L+ L+ +T Y Y + SNF +F ++ A++ Sbjct: 220 ILWFLICLMGYIAFTISYPVAYMF------IPCLVWSNFRFGQVGSTTFILIISAIAV-- 271 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 I ++H + L +L + +N+ IL+ EK ++IA L+ ++ + Sbjct: 272 INTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKS 331 Query: 238 -----TRKRAEE---------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++A N AKS FLA+MSHE+RTPLNAI+GFS++++ Sbjct: 332 SAQLAANQKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL 391 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + Y+ I SG LL LIN+ILDLS+IEA + EL E ++L +V+E Sbjct: 392 VRDYKS----RSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQ 447 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGW 395 + ++A +KNIE+ + + + DE +RQ++ NL+ NA+KFT G ++ V + Sbjct: 448 IFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDY 507 Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 I ++D G GI + + +F Q I G GLGL I + + G Sbjct: 508 LDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLG 567 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G + I P Sbjct: 568 GTISLHSESEKGSTFLMIFP 587 >gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155] gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 932 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 179 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 235 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 236 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 295 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 296 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYIKTIERSATNLLGIIN 351 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + + I ++ AQ K +E+ I P++ V D Sbjct: 352 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 411 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 412 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 471 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S +G LP Sbjct: 472 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 523 >gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] Length = 930 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 88/279 (31%), Positives = 148/279 (53%), Gaps = 21/279 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ +SN+ + + + +++++ I EL+ ++ R +AE + KS FLA+ Sbjct: 658 QWNWVRSNIMVTNYRPDENEIEIIGINYDITELKETEAELILARDKAEMADRLKSAFLAN 717 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLNAI+GFS+++ N E KEY+ + + + LL LI +ILDLS+IE Sbjct: 718 MSHEIRTPLNAIIGFSDLLVE----AENLEERKEYVKIVRNNNELLLQLITDILDLSKIE 773 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG +E S + + + + + +Q++ E +E+ + +D + QVILN Sbjct: 774 AGTFEFSCGDVDVNLLCEDIVCCMQMKVHE-EVELLFDSHLPQCHIISDRNRLHQVILNF 832 Query: 376 LSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 ++NA+KFT+ G + VG+ G + ++D G GI E + + F + S Sbjct: 833 VNNAIKFTSQGS---IRVGYQVKGEELEVYVQDTGVGIDEEQQLHIFERFVKL----NSF 885 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I QSI+ GG+ + S+L +G LP Sbjct: 886 VPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924 >gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] Length = 1507 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 10/278 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + A D+ AK L E +++AE N KS FLA+MSHE+RTP+N Sbjct: 1089 LRDTRGNRIGLLAILRDVSDNKRFAKELL-EAKQKAERANRTKSEFLANMSHEIRTPMNG 1147 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG +++ + + +E++ +H+SGQ LL++IN+ILDLS+IEAGR L + Sbjct: 1148 ILGMTQLALNRDL----PDDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPF 1203 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 L+++V + L L A++K + I P + V D+ +RQ++ N++ NA+KFT Sbjct: 1204 DLVEMVESTLKPLGLLARDKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKR 1263 Query: 386 GG-RVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V V + G+ IKD G GI+ +I ++ F Q + + G GLG Sbjct: 1264 GRVEVKVRLAEIQEPGRASLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGLG 1323 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 L I+++++ GG + S+L G +L +V Sbjct: 1324 LAISKALVEMMGGVIQVESELHRGSTFSFVLTLEKVAE 1361 >gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1037 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 12/280 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + K + +++AE N AKSRFLA+MSHELRTP N I+G ++++ T+ Sbjct: 634 RDITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQLLQTTTL--- 690 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E +EY+ +S Q L+++ILDLS +E GR + S L + + + Sbjct: 691 -DEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHDIFDAS 749 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A+EK + + + V D ++Q+++ L+SNA+KFT G + + + G Sbjct: 750 AREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVVEIRLDALCAAKGG 809 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ D G GI E ++ + T F Q + QG GLGL I + ++ G Sbjct: 810 DVRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNID 869 Query: 458 IRSKLREGVEVIAILPN---TRVLNFIPEDNHESTQYKCY 494 I S EG V +LP R P + Q + + Sbjct: 870 IDSLPGEGTTVHVVLPFGLSARDDRETPGKALSTEQSRDF 909 >gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 907 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 16/336 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG--------MLATALS 198 I+A + + ++ ++ + T + +L ++ A + Sbjct: 339 FMAEINANTRLSILLCIYALIIATIIGIFTARWVIKPILHLNRAAKDIAKGKWNKTLTIK 398 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + N + + L +E + E + +AE N AKS FL++MSH Sbjct: 399 RSDEVGELSESFNQMARQLKESFETLEQRVEARTAEIAEAKDKAEVANQAKSEFLSNMSH 458 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG++++++ E + + IH+SG HLL LIN+ILDLS+IEA + Sbjct: 459 ELRTPLNGILGYAQILKREHNLSF---RQTDGLEIIHKSGIHLLTLINDILDLSKIEARK 515 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL I + + + ++++RA EK+I + + +L + ADEK +RQV+LNLL Sbjct: 516 MELYPDDIHFANFLDSVVGVIKMRALEKDILFKYQTESNLPIGIIADEKRLRQVLLNLLG 575 Query: 378 NAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V V + I D G G+ ++ + F Q + Sbjct: 576 NAIKFTEQGQVTLGVRVKEYQVNTSTICFDIIDTGVGMNPQQLHKIFLPFEQVGD-TQRR 634 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 +G GLGL I + ++ GG+ + S+L +G + Sbjct: 635 SEGTGLGLAITKQLVELMGGELKVTSELGKGSKFWF 670 >gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] Length = 1319 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ ++ + ++ A+ + AK FLA+MSHE+RTP+N ILG + + + Sbjct: 583 LTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL----D 638 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I+ S ++LL +IN+ILD S+IE G+ + SL ++ ++ L+AQ Sbjct: 639 PAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQ 698 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRG 400 EK IE I+P + + + D + QV++NL NAVKFT G V + + Sbjct: 699 EKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIEMLTERDVV 758 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + S+KD G GI + +I + +F Q +I G GLGL I++ ++ GGQ + S Sbjct: 759 LHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSS 818 Query: 461 KLREGVEVIAIL 472 L G + Sbjct: 819 TLGAGSTFAFTI 830 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 164/465 (35%), Gaps = 20/465 (4%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77 G + K I + + ++ V +V+ A F + + Sbjct: 261 SRRMQRGDTFTIKATSGNSIYAVSLVAVNDVGGKAAGYVISYAPAPLAGLIMREFMVSLV 320 Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 + + AA L ++ S E + + +A GL + Sbjct: 321 VATVMLAAACVLFGRLKRSSTA-LEHERASLKAITDTMADGL--------FVMDNHGLIV 371 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM---SMHVLDISLAGMLA 194 +A ++ + + + +S + S Sbjct: 372 LANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVFKAVSGGKPYAGEEYFSH 431 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + L+ I + + + AE N+AKS FLA Sbjct: 432 KDGRVIAMDVASMPLVQDGQLTGSVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLA 491 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+N I+G + ++ + Y I S + LL +IN+ILD S++ Sbjct: 492 TMSHEIRTPMNGIIGMTSLLLDTHLSS----EQNYYTNTIRVSAESLLTIINDILDFSKM 547 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVIL 373 EAG+ E E+ L +V + +L RA+ K I + + S V+ D +RQV+L Sbjct: 548 EAGKLEFEETPFLLTPLVEGVVDILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLL 607 Query: 374 NLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 NL NAVKFT G + VT+ +I D G GI + + + F Q + Sbjct: 608 NLAGNAVKFTEKGSVAITVTLEPKDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSS 667 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I Q I+ GG S +G P Sbjct: 668 TARKFGGTGLGLVICQRIVEALGGAIGFDSTPGQGSRFWFQFPLR 712 >gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium] Length = 1248 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 167/405 (41%), Gaps = 26/405 (6%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 +SL + + ++ ++ ++ + + YL + Sbjct: 520 LLISLVRDITSARQSQADLEESERRFR--ELVESMDDGV---YVASEHRANYLYLSHRTQ 574 Query: 145 LLIALSISALSNFMLPYAVFLSFF-PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L +S + + ++A D L F Sbjct: 575 DLWGVSAEDIQAHPARLKSLVLPEDQHLLAEQEALEDQDQPTDTLLRLQHPDKGLRFLRH 634 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + D+ E A R AE + AKS+F+A+MSHE+RTP Sbjct: 635 RTRARRLPDGQSRIYGLVSDVTDEHGQA-LELQRARDLAEAASQAKSQFMANMSHEIRTP 693 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ILG +E++ +G N+ + + ++RSG+ LL +IN+ILD ++IEAGR EL+ Sbjct: 694 MNGILGMTELL----LGTPLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELAT 749 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 L +V + + ++ RA EK +E+ + P L SV D +RQ++ NL++NA+KF Sbjct: 750 CDFVLRTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKF 809 Query: 383 TAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSI 429 T G + V + G ++D G GI +P + ++F Q + Sbjct: 810 T-EHGEIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANG 868 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + G GLGL I++ ++ GGQ + S G E + +P Sbjct: 869 GMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPV 913 >gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217] gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217] Length = 454 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 91/422 (21%), Positives = 160/422 (37%), Gaps = 23/422 (5%) Query: 58 LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLLVGQIA 116 + A + ++ + + + +++L +K + D + + + Sbjct: 44 VAAILALFYIDPIVILAFYSAVALIELLDMALARKHLGWDGEDPVVGGKILKRITINTGL 103 Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA----LSNFMLPYAVFLSFFPVVV 172 + + + T L ++ + + +L + + Sbjct: 104 SAITISAFIVGTAVQQTSSGHLTPSFLLLCASIFAAMYNSQMIGILLLRLSIYGLAFLFI 163 Query: 173 ALSTQAIMSMHV--LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 A + + L F I+ + S + L E+ LI Sbjct: 164 AFLDVFRYFPPLNSPIWLEFFTIIFVLYFICDISAKFYLSYQERL----EQIQLIK---- 215 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + +RA+ KS+FLA++SHELRTPL +I+G +++ +G + E K Sbjct: 216 ------QENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEV-PEKLKHV 268 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 IG ++G L NLI+++LDL +IEAG ++ ++V E + A + I++ Sbjct: 269 IGIAAKNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKLGIQV 328 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 D + QV+ NLLSNA+KF+ G V V V G IS+ D G Sbjct: 329 TTIHCEEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEAL-GTRIRISVHDEGV 387 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + V F Q + G GLGL I++ I+ H G S+L G Sbjct: 388 GIPKDAKDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVSELGVGSTFSI 447 Query: 471 IL 472 Sbjct: 448 EF 449 >gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] Length = 772 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 150/286 (52%), Gaps = 27/286 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E + ++ R+ AE N+AKS FL SMSHELRTPLNAI+GFSEV++ GPL Sbjct: 341 EDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPL 400 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + EY+ DI +GQHLL+LIN+ILDLS++EAG+ L ++ + D + ++ML+ + Sbjct: 401 TD-KQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLVMLKEK 459 Query: 343 AQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 I + + + ADE+ ++Q+I N+LSNAVKFT GG + + + Sbjct: 460 IACHGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMVLDPDP 519 Query: 400 ----------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 ISI D G GI+ ++P + F Q I+++ G Sbjct: 520 IPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIRASTPG 579 Query: 438 VGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIP 482 GLGLP+++ + HGG + S+ +G ++P V P Sbjct: 580 TGLGLPLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPLMTVSGKTP 625 >gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1026 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 7/258 (2%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++ AE AKS FLA+MSHE+RTP+NA++G +E++ E Sbjct: 616 ESIRDITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKD 675 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L + +E + I SG LL++IN ILDL++IEA EL I + + + ++ Sbjct: 676 EKLTSA-QRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLV 734 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397 +K I+ KI+ ++ + D + Q+++NLL+NAVKFT G + V+V T+ Sbjct: 735 SGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQ-GEIAVSVSNTNL 793 Query: 398 ---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G + ++KD G GI E ++ + SF Q + G GLGL I++ + G Sbjct: 794 DDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNG 853 Query: 455 QFLIRSKLREGVEVIAIL 472 + + S + G + Sbjct: 854 RMWVESAVGVGSVFHFTI 871 >gi|209525055|ref|ZP_03273599.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209494464|gb|EDZ94775.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 573 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 39/379 (10%) Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDIS 188 +P +Y + + L+++ L + + + AI+ +L Sbjct: 190 SPAATNLYDLSGEALRLAVNFRDRADLALVELQTGQSIARNIILISLLTAIVLGWLLAKY 249 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILS-------------CQAEKDDLIAELEVAKSLS 235 +A + I + + + L + LI + Sbjct: 250 TGKAIADPIEKMIDIADQVGEDSDFALRIPLMEDQHTEIGKLTTTLNQLIKRVAQYTEEL 309 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + AE N +KS FLA+MSHELRTPLNAI+G+SE++ E+ ++ + + I Sbjct: 310 QKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPD-LERIQ 368 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +G+HLL++I++ILD+S+IEAG L ++ ++ + + ++ + + K Sbjct: 369 TAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNHNALKVKTA 428 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------------- 398 L +++AD +RQV+LNLLSNA KFT G + + V + Sbjct: 429 KDLGTMYADLPKVRQVLLNLLSNASKFTNK-GTITLQVQRVTKIPNEWKKDTLNAEKFAS 487 Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + +KD G G+ + ++ + +F Q + G GLGL I+Q + GG Sbjct: 488 AKTQYLVFQVKDTGIGMNKEQVKHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILGGG 547 Query: 456 FLIRSKLREGVEVIAILPN 474 ++S+ G + LP Sbjct: 548 IYVKSREGVGSTFVVWLPV 566 >gi|75910333|ref|YP_324629.1| periplasmic sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704058|gb|ABA23734.1| Periplasmic Sensor Hybrid Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 922 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIY----KSATLLIALSISALSNFMLP----YA 162 LV QI L L + S L +++ LP Sbjct: 310 LVSQILSAALDGRPLLRVCSEQAEWLLIFFWSFINSVVTWYGLQVNSQRKQSLPGWPILV 369 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + LS + + T ++ + +S ++ T + L + Q Sbjct: 370 ILLSTSIIFGSSYTAFMIGWWIPVMSPLLTTFLSIIVTTNLYKQL-QLEKANQQLQDYSR 428 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L ++ + + A+ N AKS FLASMSHELRTPLN ILG+++++E Sbjct: 429 TLEEKVRDRTQELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILER---SEN 485 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 T E I IH+ G HLL LIN+ILDLS+IEAG+ EL + + + M ++R Sbjct: 486 IAPTVLEGINIIHQCGSHLLTLINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRIR 545 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398 A +K I DP L + ADEK +RQ+I+NLL NA+KFT GG + V + Sbjct: 546 ALQKGISFHYLPDPHLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEVGANF 605 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G G+ ++ + F Q +G GLGL I+ + GGQ + Sbjct: 606 HKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDK-SKQVEGTGLGLAISCKMAELMGGQIQV 664 Query: 459 RSKLREGVEVIAIL 472 S L G + L Sbjct: 665 DSILGTGSKFWLDL 678 >gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1637 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 7/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ E + A+ N AKS FLA+MSHELRTPL+AILGF+++++ + + Sbjct: 1233 IETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP----DE 1288 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T +EY+ I R+G +LL L+ ++LDLSRIEA ++ + S++SL +++ + +++R Q Sbjct: 1289 GTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQ 1348 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-Q 401 + + + L + D +RQ+++NL++NA+KFT G V V Sbjct: 1349 DYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFL 1408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + + D+G GIA+ ++ T+ F Q I + G GLGL I + + GG + S Sbjct: 1409 LLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSST 1468 Query: 462 LREGVEVIAILPNTRV 477 EG E LP + Sbjct: 1469 EGEGSEFTIRLPVDPI 1484 >gi|254420410|ref|ZP_05034134.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196186587|gb|EDX81563.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 566 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 102/450 (22%), Positives = 169/450 (37%), Gaps = 28/450 (6%) Query: 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 D + + + R ++A T P W L+ + A G +V Sbjct: 5 DLSRLGGAMVARARQWRTRIGLGAVIALAFFTMTGWPFALAWLLVYSILQALEFW-GFRV 63 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT--IYKSATLLIALSI 151 VW + L + + + + I A ++ I Sbjct: 64 SRKSEDWTPSTVWAWRAVGFIALNNLVFGAFAVRQAFGGQDLSVIAAILVIAGAIVNGVI 123 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + L +A L A++ +M+ + ++ +A L I Sbjct: 124 ACAGSRHLTWASILPHIGCFCAVTASVLMAGYPPWLTAQMGVAGLLFVVLAIAAS----- 178 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +L L +E R AE N++KS+FLA+MSHE+RTPLN ++ + Sbjct: 179 --------------NQLAQKLRLMEEGRLTAESANVSKSQFLANMSHEIRTPLNGVVSMA 224 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ + + +E + I S L L+++ILD++RIEAG L D+ Sbjct: 225 HLLARSPLSAPD----RELVQIIQSSADTLTTLLSDILDMARIEAGEVTLEYVPYHFGDM 280 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 VR + LRAQEK + + ++ + D +RQV+ NL+SNAVKFT G++ Sbjct: 281 VRSACALFTLRAQEKGVAVVLELPEDADRFIIGDGNRLRQVLNNLISNAVKFTTR-GQIT 339 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V V + + D G G + F Q I G GLGL I++ ++ Sbjct: 340 VIVTLPEAGCVRVVVADTGVGFDPQASGDLFARFQQADATITRKFGGSGLGLAISRELVC 399 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G+ S EG LP Sbjct: 400 LMKGRIGYDSIPGEGATFWIDLPFEPCEPS 429 >gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] Length = 821 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 163/307 (53%), Gaps = 7/307 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + + + A ++ +T ++ + + + Sbjct: 500 TTTIALRTGRWLKMVERATPDGGLITVGIEVTENVRNEEELKKQKEKLRRAALDLERSEG 559 Query: 233 SLSD------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 S+ E +++AE LAKS FLA+MSHELRTPLNA++GFSE++ E GPL + + Sbjct: 560 HASELSRKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPS 619 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 YKEY DI SGQHLL++IN+ILD+++IEAG+ +S I ID V + M++ +A+EK Sbjct: 620 YKEYAKDILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEK 679 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I++ + + +L + AD + +RQ++LNLLSNA+KFT G + V V Y + Sbjct: 680 AIDLVLEAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTD-IYFGVT 738 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI ++P + F Q + +G GLGL + +S HGG+ L+ S EG Sbjct: 739 DTGIGIPAEDLPRLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGT 798 Query: 467 EVIAILP 473 V +LP Sbjct: 799 TVAFVLP 805 >gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 700 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 141/265 (53%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E RK+AE N AKS+F+A MSHE+RTPLNA+LG E + L + Sbjct: 305 ITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLDS--- 361 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K ++ + +S LL +IN+ILDLSRIE+G + L S I++++ ++ L +A Sbjct: 362 -KQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSPQAT 420 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +KN+++ +ID S+ ++ D+ + QV+ NL+ NAVKFT++ G V + V I Sbjct: 421 KKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSV-GSVRI-VARKIEETIEI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA+ + F Q +I G GLGL I+Q ++ G+ + S+L Sbjct: 479 AVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLESELG 538 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G +P E++ +S Sbjct: 539 TGSCFKISIPIVYPSITSCENDTQS 563 >gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] Length = 607 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 3/228 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F+A++SHELRTP+ +I ++E + + ++ET ++ I + L+ + Sbjct: 382 MRREFVANVSHELRTPITSIKSYTETLLDGAV--EDHETSNRFLSVIDSEADRMTRLVKD 439 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +L LSR++ + +SL +V+ + L++ +Q KN ++ + + + AD+ Sbjct: 440 LLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVINADKDR 499 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV++NL+SN++K+TA G + V VG Y+ + D+G GI +P V F + Sbjct: 500 LEQVVVNLISNSIKYTAEYGEITVYVGKIYND-VYMKVTDSGIGIPGESLPRVFERFYRV 558 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL IA+ I+ HGG I S++ +G EV+ +P Sbjct: 559 DKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIPRA 606 >gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] Length = 508 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 145/336 (43%), Gaps = 8/336 (2%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-- 212 V + + + + + D T + Y + + Sbjct: 176 IALTDRITVLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQRLGAGELDYRIDDIDDDG 235 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + +L A + ++ A+E N AKSRFLA++SHELRTPLNAI+G+SE Sbjct: 236 ELGDLAIAFNTMSDKLRRAIDEEIDAKQSADEANAAKSRFLANVSHELRTPLNAIIGYSE 295 Query: 273 VIELETMG--PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++ E P++ E Y+ + I SG+ LL LI++ILDLS+IE G+ L A + Sbjct: 296 MLHDELDDEAPVDREQYQSDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVREAFHPGE 355 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + L + + L + D RQVI+NLLSNA KFT G + Sbjct: 356 ALTMAVDALAPLLRRNGNVLECDDFSDLPQIHNDAVKFRQVIVNLLSNAAKFTEQ-GVIR 414 Query: 391 VTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V+ + + Q I++ D G G+ E + V +F Q + G GLGL I + Sbjct: 415 VSASFEASSAQLSIAVSDTGIGMTEEQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFC 474 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GG ++S EG LP +P Sbjct: 475 ELMGGTIAVQSSPGEGSVFTVSLPADP--ESVPAAA 508 >gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 782 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 125/252 (49%), Gaps = 11/252 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R+RAE N AKS FLA+MSHE+RTP+N ++G +E++ T+ ++ K Y Sbjct: 204 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDTTL----SDEQKLYA 259 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA + L E L + E +++LQ A++K + I Sbjct: 260 NTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTARDKGLTIL 319 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISI 405 D L + D +RQV+ NL NAVKFT G V + V + I Sbjct: 320 VDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNE-GHVTLRVTGISNPEEGTCAVHCMI 378 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI +I V F Q +G GLGL I++ ++ G+ + S +G Sbjct: 379 EDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWVESDEGKG 438 Query: 466 VEVIAILPNTRV 477 +P V Sbjct: 439 SCFGFRIPLPIV 450 >gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 940 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDLI------AELEVAKSLSDE--TRKRAEEENLAKSRFLAS 255 L + V + ++ + LE+A+S+ ++ ++A+ N AKS FLA+ Sbjct: 432 VRRLDRDTVNRAMQFYSRFAMLISSLSWSNLELARSVHEQKVATQQADVANKAKSEFLAN 491 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N I+G ++++ + P +EY S L L+++ILDLSRIE Sbjct: 492 MSHEIRTPINGIMGILQLLQSTELSP----EQQEYTNMGIVSASRLTRLLSDILDLSRIE 547 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374 AG+ E+ + + L + + + ++EK+I + DP L V DE ++Q++ N Sbjct: 548 AGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISLEFTQDPCLPQVLLGDEARLQQIVFN 607 Query: 375 LLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L+ NA+KFT GR+ V +++ D G G+ + + + F Q A Sbjct: 608 LVGNALKFTQE-GRISVNWHLQQRRGRDARVLLTVSDTGIGMTDDTLDELFKPFAQAENA 666 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 QG GLGL I + ++ G + S +G LP +PE+ T Sbjct: 667 FTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQGSTFFVSLPL-----GMPEEPASRT 720 >gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 830 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 29/305 (9%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVA-----------KSLSDETRKRAEEENLAKS 250 + L + Q+E L LE E ++ AE N AKS Sbjct: 129 RVNARLQNKVEALTKAQSEILALNTALEKRVEERTAELAETNRKLLEAKEAAESANEAKS 188 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N ILG E++ + + + I + S LLN++N+ILD Sbjct: 189 LFLATMSHEIRTPMNGILGMLELLSHSQL----SAEQTKMISTVRDSAFSLLNILNDILD 244 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+IEAGR EL +S+ +I+ + A ++N+ + +DP + ++ DE +R Sbjct: 245 FSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLHCYVDPDIPDALVGDEVRLR 304 Query: 370 QVILNLLSNAVKFTAI----GGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVL 421 Q++ NL SNA KFT G V + GQ IS+KDNG G+ + + + Sbjct: 305 QILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIRISVKDNGIGMDQVTLDKLF 364 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-----PNTR 476 + F QG + G GLGL I + + GG + S+ +G E L P + Sbjct: 365 SPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVASEPGQGTEFRLNLTLAAAPGAQ 424 Query: 477 VLNFI 481 V Sbjct: 425 VEPPP 429 >gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] Length = 693 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 142/268 (52%), Gaps = 9/268 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E RK+AE N AKS+FLA MSHE+RTPLNA+LG + + + Sbjct: 305 ITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADSGL----R 360 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E++ + +S Q LL +IN+ILDLS+IE+G +EL+ +S+ D + + L +A+ Sbjct: 361 QEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQAR 420 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 KNI + +ID ++ SV D+ + Q++ NL+ NA+KFT+ G V V I Sbjct: 421 NKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTST-GSVRVLARRVEDN-IEI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA+ + F Q +I G GLGL I++ +++ G+ + S L Sbjct: 479 SVIDTGIGIAKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSSLG 538 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQY 491 G ILP V+ + + E QY Sbjct: 539 IGSCFKVILPI--VIPLMTIEVDEPEQY 564 >gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 748 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 132/294 (44%), Gaps = 15/294 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIA----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 LFK+ + AE+ + ELE + K AE N+AKS FLA+MSHE Sbjct: 43 AMVLFKNAKDLERKVAERTQSLEKARDELEKSNQELTVAMKAAESANVAKSEFLATMSHE 102 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N ++G ++E + ++ +G LL LIN+ILD S+IEAG+ Sbjct: 103 IRTPMNGLVGVLTLLEEDL-----PFEKRKLLGTAQECADDLLVLINDILDFSKIEAGKM 157 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 L + +++ + A +K +EI DPS + D +RQVI NL SN Sbjct: 158 NLESVEFNALNLAESICELHSSSAHKKGLEITSDSDPSSAFCSIGDPLRLRQVISNLTSN 217 Query: 379 AVKFTAIGGRV---HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT G V + I D+G GI + + +F Q + + Sbjct: 218 AIKFTNQGEIVVTPSIVSKDCEQNYLRFEITDSGIGITKETQEKLFNAFTQANSSTTREF 277 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI--PEDNHE 487 G GLGL I++ ++ GG + SK G +P+ + P D E Sbjct: 278 GGTGLGLAISKKLIEIMGGDIGVSSKEGTGSTFWFEIPHRPAKDQRCNPADIPE 331 >gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 995 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 12/281 (4%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + L + + L D I + A+ E ++ AE + AKS FLA+MS Sbjct: 570 LLYGLFSAELIRLQQRDLLLTVMVD--ITDRVNAEHALLEAKQAAESASRAKSEFLANMS 627 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +E++ + ++Y+ I SG +LL LIN+ILDLS+IEAG Sbjct: 628 HEIRTPMNGVLGMAELLAFTDLTA----EQEQYLACIKSSGDNLLALINDILDLSKIEAG 683 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + EL + SL + + + K ++ + L V D+ +Q++LNLL Sbjct: 684 KIELEYADFSLRKAINDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLL 743 Query: 377 SNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 SNA+KFT G V ++ +++ D G GI T+ F Q + Sbjct: 744 SNAIKFT-DHGSVSISAELIECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTT 802 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ + GG + S+ G LP Sbjct: 803 RRFGGTGLGLAISRQLAELMGGDIGLESEPGSGSRFYLDLP 843 >gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1002 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 150/386 (38%), Gaps = 32/386 (8%) Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 + L Q + L + T + + + L+ + L+ Sbjct: 398 ERTAALQNTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTANTLNGHYQE 457 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 P+ H ++ A + + +FK Sbjct: 458 -------LPIFGLADLIEHTRSHPGEVFTADVALAKDRIGQAVGTAIFKRTDTQEVAACF 510 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276 L+ A+ D K+ F++++SHELRTPL ++LGF+ + ++ Sbjct: 511 GSALLIRDVTAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIQEKLQK 560 Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 + L+ E K + + I + L +LIN++LD++++EAG+ E I Sbjct: 561 DVFPILSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPID 620 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + +++ +I+ L + D + QV++NL+SNAVKFT G Sbjct: 621 PGELLDWATTSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFT-EFG 679 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V V IS+ D G GIA + P V F Q + +G GLGLPI + Sbjct: 680 SVTCRVKQDKDG-VCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 738 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ +HGG+ + S+ G +P Sbjct: 739 IVEHHGGRIWVESEPGHGSVFSFHIP 764 >gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1637 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 7/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ E + A+ N AKS FLA+MSHELRTPL+AILGF+++++ + + Sbjct: 1233 IETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP----DE 1288 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T +EY+ I R+G +LL L+ ++LDLSRIEA ++ + S++SL +++ + +++R Q Sbjct: 1289 GTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQ 1348 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-Q 401 + + + L + D +RQ+++NL++NA+KFT G V V Sbjct: 1349 DYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFL 1408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + + D+G GIA+ ++ T+ F Q I + G GLGL I + + GG + S Sbjct: 1409 LLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSST 1468 Query: 462 LREGVEVIAILPNTRV 477 EG E LP + Sbjct: 1469 EGEGSEFTIRLPVDPI 1484 >gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4] Length = 984 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 22/334 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L I++ ++ GG+ + S+L +G LP + Sbjct: 659 LAISRKLVQAMGGELQLDSQLGQGSCFWFTLPLS 692 >gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii] Length = 905 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 17/314 (5%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + L + A + + + I + + +E+ D R+ Sbjct: 205 PSLRSHELDELAAGINRMAEVMQHAQEEMQNSIDQATEDVRQNLETIEIQNIELDMVRRE 264 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A E + KS FLA+MSHE+RTPLN I+GF+ +++ + P +Y+ I +S L Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNTIQKSADSL 320 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360 L++INEILD S+IEAG+ L + +L +++++ + +L A K++E+ + + Sbjct: 321 LDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDTPLA 380 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416 + D + +RQV+ NL+SNA+KFT G + V IS+ D G G+++ + Sbjct: 381 LNGDPQRLRQVLTNLISNAIKFTNE-GTIAVRAMVEDIGEEFAQLRISVHDTGIGLSQED 439 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + +F Q ++ G GLGL I++ ++ GG+ + S EG E L Sbjct: 440 LNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFWIRL---- 495 Query: 477 VLNFIPEDNHESTQ 490 +P D+H + Sbjct: 496 ---SLPLDDHSEDE 506 >gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] Length = 1144 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 180/373 (48%), Gaps = 7/373 (1%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 GL ++L + +Y + L ISA S + + A + Sbjct: 555 GLAHSVLRNLYRYLPRRFVRGLYSRLGRFVVLVISANSLLAGLLMLIFNQIGASSATESA 614 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSD 236 + + + + + +++ + + + K + Q+ K I E Sbjct: 615 LLEKALITLFIVLFIASGVIAWLFLLAHESRLTAQKESNHQSAKLTREIDAHEQTDRELQ 674 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E +++AE N AKSR+L +SHELRTPL +ILG+++++ + + K + IHR Sbjct: 675 EAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKEEVASD---QKRGLKIIHR 731 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SGQ+L +LI +LD+S+IEAGR +L + ++L +++ + + M +++A +K++ + +D Sbjct: 732 SGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQADKKSLVLNFTLDG 791 Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 L V DEK +RQ+++NLLSNA+K+T G+V + + + ++D GPGI + Sbjct: 792 RLPDYVMTDEKRLRQILINLLSNAIKYTDK-GKVDFHIRYR-NQVAEFVVRDTGPGIEKE 849 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + V F + + + G GLGL I + + GG ++S++ G E L Sbjct: 850 NLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKSEIGTGSEFRVSLLLP 909 Query: 476 RVLNFIPEDNHES 488 + ED +S Sbjct: 910 WLDQSQAEDTSKS 922 >gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1133 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 11/330 (3%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVK 213 N + + LSF + + + + + + L A L + Sbjct: 351 VNMNIRTTILLSFAALTITVLLGIVTTNWITKPILQLNSAAKEISQGKWETQLKIYREDE 410 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + D + ++L+ + + K+ E + K FLA+ SHELRTPLN I+G E Sbjct: 411 LGELANSFDQMASQLKKSFETLEAQNKQLTELDRLKDEFLANTSHELRTPLNGIIGIGEF 470 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + E LN+ T + I S + L NL+N+ILD S+I + EL AI + +V Sbjct: 471 LLEENTKNLNSITTSN-LAIIVSSARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVE 529 Query: 334 ECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 I + ++ + KN+++ I L V ADE ++Q++ NL++NA+KFT G+V ++ Sbjct: 530 SVITLNRVLVGKNKNLQLTNAIPTDLPPVLADENRLQQILYNLIANAIKFT-ESGKVEIS 588 Query: 393 VG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 I + D G GI ++ + SF QG +I G GLGL + Sbjct: 589 ASLYSPKEDQDEATEIIIMVSDTGIGIPPDQLDRIFESFEQGEGSIIRKYGGTGLGLAVT 648 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + ++ GG+ + S++ G LP + Sbjct: 649 KELVELQGGRIWVESEVGVGSRFNVTLPIS 678 >gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] Length = 905 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 17/314 (5%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + L + A + + + I + + +E+ D R+ Sbjct: 205 PSLRSHELDELAAGINRMAEVMQHAQEEMQNSIDQATEDVRQNLETIEIQNIELDMVRRE 264 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A E + KS FLA+MSHE+RTPLN I+GF+ +++ + P +Y+ I +S L Sbjct: 265 ALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNTIQKSADSL 320 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSS 360 L++INEILD S+IEAG+ L + +L +++++ + +L A K++E+ + + Sbjct: 321 LDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDTPLA 380 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416 + D + +RQV+ NL+SNA+KFT G + V IS+ D G G+++ + Sbjct: 381 LNGDPQRLRQVLTNLISNAIKFTNE-GTIAVRAMVEDIGEEFAQLRISVHDTGIGLSQED 439 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + +F Q ++ G GLGL I++ ++ GG+ + S EG E L Sbjct: 440 LNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFWIRL---- 495 Query: 477 VLNFIPEDNHESTQ 490 +P D+H + Sbjct: 496 ---SLPLDDHSEDE 506 >gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 840 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 105/445 (23%), Positives = 168/445 (37%), Gaps = 33/445 (7%) Query: 46 FRVSPILPLFVLLVANIG--TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 F L ++ IG + P +L YA + + + + Sbjct: 240 VHYVAAALFFQLALSGIGSQLLWGDMPWMQQKNLPLSMGYANFAAAI--FVIKFLDLRGK 297 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL----TIYKSATLLIALSISALSNFML 159 W L+ GL + +V P T +L L I Sbjct: 298 SKWACKSLMAFGVAGLATAVSCVVLPEQITVHFLQGLTFFGCLLILTITFVEVKKGKPSA 357 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSC 217 F ++ + T + L + ++ L K + Sbjct: 358 RIFGFAWLPLLLGTIVTVLYYRGFLPRNLLIEQSQAIGVVMEMVLLSLALAKRIEILQRT 417 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E A LE A+ + R AKS FLA MSHE+RTP+N ++G SE++ Sbjct: 418 QFEAH---AALEKAEQETRIARHNM----RAKSNFLAMMSHEIRTPMNGVIGISELLSHT 470 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + Y+ I SG+ LL L+N+ILD S++EA + L + L ++++EC+ Sbjct: 471 QLDS----AQQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVD 526 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +L + Q +++ +I L V D +RQ+ILNL NA+KFT G V + V + Sbjct: 527 ILTPKIQGSAVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRK-GHVTIAVSFQ 585 Query: 397 SGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 Q ++ D G G+ E +I + F Q I+ G GLGL I + Sbjct: 586 DENFQPHQSNDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTARQFGGTGLGLVICK 645 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 + GG + S EG Sbjct: 646 DLAELMGGSIGVHSISGEGATFWFT 670 >gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] Length = 790 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 108/285 (37%), Positives = 159/285 (55%), Gaps = 6/285 (2%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHE 259 + + N + + L + + + L+D E R RAE N AKS FLA++SHE Sbjct: 506 LIDREKELNATVDDLTRSRKTLQLQAKQLEELADKYSEERNRAENANKAKSEFLANISHE 565 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFS+++ E GPL E Y +Y DIH SG +LLN+IN+ILD+S+IEAGR Sbjct: 566 LRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCHDIHNSGTYLLNVINDILDMSKIEAGRM 625 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 + +S + + ++ A+EK+I++ ++ + V AD + ++Q++LNLL+NA Sbjct: 626 SIETEDLSAKEAAEDAARIMSTAAREKHIDVTCTVEDGI-QVRADRRALKQILLNLLANA 684 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT G V + I D G GIA+ +I + F Q QG G Sbjct: 685 VKFTPEHGTVSLKAHQ-EKNRICFEISDTGIGIADKDIARLAQPFVQVENQFTKTHQGSG 743 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPE 483 LGL IA+S++ HGG+ I S+L EG V +LP++ PE Sbjct: 744 LGLAIARSLIEIHGGKLEISSELGEGTHVRFLLPSSDPSAEVQPE 788 >gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] Length = 762 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 8/275 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +D AE + E K A+ N AKS FLA+MSHE+RTP+N ++G +E+I + Sbjct: 213 EDAFAERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTEL-- 270 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + Y I +SG LL +IN+IL+ S+IEAG+ EL + +L + + + +L Sbjct: 271 --DEDQQMYAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSP 328 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399 RA K +EI + P L + D +RQV+ N++ NA+KFT+ G + V+ Sbjct: 329 RATMKGVEITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAKGPKG 388 Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Q I + D G GI E + + ++F Q A + +G GLGL I+ +++ GG+ + Sbjct: 389 YQLGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTV 448 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +S +G LP T + +P +K Sbjct: 449 KSVAGKGSVFTIRLPLTE-CDAVPSVQEGDFDFKG 482 >gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 773 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 123/459 (26%), Positives = 198/459 (43%), Gaps = 7/459 (1%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82 + F + + + +L V I W + ++ ++ Sbjct: 322 TTARAAAGRSFYEFLDAPQATERRALFGEVLATLLPVNGIERWGERWLDMVVFPVVDGDG 381 Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 A ++L + + S + + L+ A L + L +P + ++ Sbjct: 382 KAMGVTLFTRDITSRREAEDRARAAERHLLE--ATELMSAAMLLFDPQGILVLINSACRA 439 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 A + + +F+ A ++ V A++ + + Sbjct: 440 ALPDLEDILHPGLSFIELRAAIVARRLFVQAITESQGGIKGGTPGPAPIEVRGKDGRWLL 499 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I S ++ I EL+ + + ++ AE N AKS FLA+MSHELRT Sbjct: 500 IRQSATSSGYTLI-----LGTDITELKRRERALADAKEVAEYANRAKSEFLANMSHELRT 554 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+GFS++ + G L+N Y +Y +I+ SG HLL +I++ILDL++IEAG L Sbjct: 555 PLNAIIGFSDITRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIEAGELGLD 614 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 E + +V I M+ RA K I + + L +W D ++QV++NLLSNAVK+ Sbjct: 615 EEEVDAARLVDSAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKY 674 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V VT G G IS+ D G G+ E I +T+FGQ + G GLGL Sbjct: 675 TQEDGAVAVTARLAGGDGLAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGL 734 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 P+ + + H G I S+ EG V +LP R+ Sbjct: 735 PLTRKLTEAHQGCLTIASRPGEGTTVTILLPAHRLRAAS 773 >gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1739 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 22/287 (7%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + V E+ +RA E + +KS FLA+MSHE+RTP+ AILG++E+++ + + Sbjct: 1340 TQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDT 1395 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ I R+G +LL++IN+ILDLS+IEAG+ ++ ++ + ++++RA+E Sbjct: 1396 EGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKE 1455 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 +E+ + + + + +D K ++QV++NL+ NA+KFT G V + V S I Sbjct: 1456 AGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPE-GNVRLVVRMDSDPIRLCI 1514 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + F QG ++ G GLGL I++ + GG +S++ Sbjct: 1515 DVIDTGIGITLEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVG 1574 Query: 464 EGVEVIAIL---------------PNTRVLNFIPEDNHESTQYKCYA 495 G + P +++++ + + + CYA Sbjct: 1575 VGSTFTLSVFPGDLTGVALVDHSQPVSKLVDELENSSTTPIKLNCYA 1621 >gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1002 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 152/386 (39%), Gaps = 32/386 (8%) Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 + L Q + L + T + + + L+ + L+ Sbjct: 398 ERTAALQNTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTATTLNGHYQE 457 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 P+ H ++ A + + +FK + Sbjct: 458 -------LPIFGLADLIERTRSHPGEVFAADVALAKDRIGQAVGTAIFKRTDTKEAAACF 510 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IEL 276 L+ A+ D K+ F++++SHELRTPL ++LGF+ + ++ Sbjct: 511 GSALLIRDVTAEKEID----------KMKTDFISTVSHELRTPLTSVLGFASIIQEKLQT 560 Query: 277 ETMGPLNNETYK---------EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 + L+ E K + + I + L +LIN++LD++++EAG+ E I+ Sbjct: 561 DVFPVLSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIN 620 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + +++ +I+ L + D + QV++NL+SNAVKFT G Sbjct: 621 PGELLDWAANSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFT-EFG 679 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V V IS+ D G GIA + P V F Q + +G GLGLPI + Sbjct: 680 SVTCRVKQDKDG-VCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQ 738 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ +HGG+ + S+ G +P Sbjct: 739 IVEHHGGRIWVESEPGHGSVFSFQIP 764 >gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 845 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 177/380 (46%), Gaps = 37/380 (9%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 + W L+ L+ +T Y Y + SNF +F ++ A++ Sbjct: 220 ILWFLICLMGYIAFTISYPVAYMF------IPCLVWSNFRFGQVGSTTFILIISAIAV-- 271 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE- 237 I ++H + L +L + +N+ IL+ EK ++IA L+ ++ + Sbjct: 272 INTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKS 331 Query: 238 -----TRKRAEEE---------------NLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++A E N AKS FLA+MSHE+RTPLNAI+GFS++++ Sbjct: 332 SAQLAANQKALAEQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL 391 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + Y+ I SG LL LIN+ILDLS+IEA + EL E ++L +V+E Sbjct: 392 VRDYKS----RSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQ 447 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGW 395 + ++A +KNIE+ + + + DE +RQ++ NL+ NA+KFT G ++ V + Sbjct: 448 IFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDY 507 Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 I ++D G GI + + +F Q I G GLGL I + + G Sbjct: 508 LDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLG 567 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G + I P Sbjct: 568 GTISLHSESEKGSTFLMIFP 587 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 92/416 (22%), Positives = 161/416 (38%), Gaps = 22/416 (5%) Query: 64 TWFTQNPIFPMWSLIT---LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 F + W++ + + L W L+ + + Sbjct: 257 FVFNELAPILSWNVCLRIEYFTFYLSPYLFFTFFRGF-YPDYYPKWMHRSLLFPTLVFIS 315 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + L + Y I +L+ L + + + FL + + Sbjct: 316 FLLFLPTQIYPELNSYYQIVFLFGILMILQGVFRAAYHRKESGFLFLVGISTVAIAAFVD 375 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 ++ I + F + L L A S + K Sbjct: 376 LLNANQIFYSVEAIPIGIFVFILVQSLT---------------LSRRFSRAFSEVETLSK 420 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + K FLA+ SHEL+TPLN I+G +E + G L N+ ++ +G I SG+ Sbjct: 421 RLLALDKLKDEFLANTSHELKTPLNGIIGIAESMFDGIGGKL-NQEQRQNLGMIVSSGKR 479 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +L+++ILD S+++ +L AI L I +++ + KN+ + + Sbjct: 480 LSSLVDDILDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPIDFPP 539 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + DE ++Q++ N++ NA+KFT GR+ V+ + ISI+D G GI + + + Sbjct: 540 ILGDEARLQQILFNIIGNAIKFTEK-GRIDVSAEIIE-KMAVISIRDTGIGIPKDKFGDI 597 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 SF Q + G GLGL I++ ++ HGG + S EG LP R Sbjct: 598 FRSFEQVDASTTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLPLAR 653 >gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 573 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 24/305 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV + + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG ++++ T+ +E + + + S + LL +I++ILDLS+IE+GR++L+E Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 ++L D V I + A++K+++ + W D + Q++ NL+ NA+KFT Sbjct: 287 WVNLRDTVTFVISQQKQIAKKKSLQFKLNCMVTTDKQFWIDSTRLSQILFNLIGNAIKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V+V ISI D G GI++ + + T+F QG +I G GLGL Sbjct: 347 DE-GEVKVSVS-EQDTELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486 I + ++ G+ +++S G +P T+ ++ + ++ Sbjct: 405 ITKHLVEMMRGKIIVKSDEHVGSTFTIKIPVLTRCNQNRPVKIENNQPTKAMDLLVVEDT 464 Query: 487 ESTQY 491 ES Q+ Sbjct: 465 ESNQF 469 >gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 1630 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 106/291 (36%), Positives = 158/291 (54%), Gaps = 8/291 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +IL QA D I E + A+ E ++ AE N AKS FLA+MSHELRTPL Sbjct: 1320 RAITDDAGRILEIQAVGRD-ITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPL 1378 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ILG+++++ E Y+E IG I RSG +LL LIN+ILDLS+IEAG+ EL + Sbjct: 1379 NGILGYAQIMGR---DSHLCENYREGIGIIERSGNYLLTLINDILDLSKIEAGKIELYPT 1435 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 ++ + Q+RA++K+I + SL +V ADEK +RQ+++NLL NAVKFT Sbjct: 1436 DFYFNQFIQAITEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFT 1495 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG + + VG + ++D G GIA ++ + + F Q +G GLGL Sbjct: 1496 KQGG-IVLKVGLEKEK-IRFQVEDTGIGIATEDLDNIFSPFLQVGNP-NYRAEGTGLGLS 1552 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 I Q ++ GG+ + S L +G +L V + ++ E++ Y Sbjct: 1553 ITQKLVDMMGGELHVESVLGQGSRFWMVLDLPEVSGMVHKEPSETSIIIGY 1603 >gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 485 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 24/327 (7%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + + L+ + ++ VL + + + K + S QA + + Sbjct: 143 LSIPLAAKEFGALGVLHLRTEKGASIPQEVMDSLEKDCQKLADAVFSAQAVGKLTVHYKK 202 Query: 230 VAKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + +++ R E AKS FL+S+SHELRTPLNAILGFS+V++ E G LN Sbjct: 203 LQEREEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLN 262 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 K+Y+ DI SG+HLL+LIN+ILDLSR+E+G +L + + I+ + +++ +A Sbjct: 263 T-KQKQYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKA 321 Query: 344 QEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 + IEI + + ++ AD ++Q++ NLLSNA KFT G + V Sbjct: 322 FKHGIEITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVD 381 Query: 399 -----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++D+G GI + V F Q S + G GLGLP+A+ Sbjct: 382 GGGSQDLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKR 441 Query: 448 IMANHGGQFLIRSK-LREGVEVIAILP 473 ++ HGG+ + S+ +G + LP Sbjct: 442 LVELHGGRIWVESEGRHQGSCFVFTLP 468 >gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1022 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 106/473 (22%), Positives = 196/473 (41%), Gaps = 28/473 (5%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97 I + +S R+ ++ L V+ + G Sbjct: 288 IVQYGQSSSRLYMLIMLLVIGAFAAVMILLLERNVLSRIIALSLQAGRIGRTGDVQARLA 347 Query: 98 I----KIGEVYVWRIWLL--VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + ++ ++ +L + Q A L + + +PE + ++ ++ Sbjct: 348 VIGNDEVAQLGRAINAMLDDIAQAARRLAESEARYRQLVEISPEAIIVHDGKRIIYTNQA 407 Query: 152 SALS-----NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 A L A F P + L T + + D+++A +L Sbjct: 408 GARLVGHTDPSQLIGADATPFLPPALHLETAEGVMRYERDLTIADGTGISLELVAAPFLA 467 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 K +I++ I + + + ++ AEE N KSRFLA+MSHELRTPL Sbjct: 468 EGKPAWQIVA------HNITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTT 521 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G++++I + ++ + I + +G+HLL +IN++LDLS+IEAGR E+ Sbjct: 522 IIGYADLITISVHSGEFDQVASD-IARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERF 580 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ + E I +++ AQ++N ++ IDP++ + +D+ +RQ++ NL+ NA KFT Sbjct: 581 SVRALAEEVIASMRVFAQKRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFT-ED 639 Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V + + T +I D G G+ +I + F Q + G GLG Sbjct: 640 GAVTLDIARTVSDHDHAALLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLG 699 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHESTQ 490 L + + + GG+ + S+ G + LP + P D ++ Sbjct: 700 LALCRRLTHLLGGKITVTSQPGVGTTFVVTLPEHLASATASEPAPVDAAPASD 752 >gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1559 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 10/270 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 HL + + + ++ + + R +AE + KS FLA+MSHE+RTP+N Sbjct: 853 HLLRQIADQVGIALAQAQMLYAETQQRRELEVARHQAELASKTKSAFLANMSHEIRTPMN 912 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG + ++ + N +++I I SG LL+LINEILDLS++EAG L Sbjct: 913 AVLGMTGLMLETPL----NSEQQDFIETIRISGDALLSLINEILDLSKLEAGEMALETLD 968 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L + E + +L A K +EI I P++ + + D +RQ+++NL+SNA+KFT Sbjct: 969 FDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFT- 1027 Query: 385 IGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V V S Y +I D G GI + + T F Q + G GL Sbjct: 1028 SNGEVVVRAELRSLSSTTATIYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGL 1087 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GL I + +++ GG+ + S+L +G + Sbjct: 1088 GLAICKQLVSLMGGEIGVESRLGKGSKFWF 1117 >gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] Length = 1138 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 154/364 (42%), Gaps = 8/364 (2%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 TL + A L+A+ + + + + L Sbjct: 148 AITLFSRTPELRGRVLATIWTTLAGALVAVVAGLIVALRMARKISAPIVAL-AGLVKHVH 206 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + I L + A+ + L +E+ R Sbjct: 207 DTRDFSTRVDIKAEGEVADLVSGIDTMLSGIRERDARIAAQVEGLESEVAARTGELVVAR 266 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE+ N AKS FLA MSHE+RTPLN IL S+++ + + + Y I +SG+ Sbjct: 267 DAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL----PQRQQRYADVISKSGK 322 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL +IN+ILD S++EAG+ +L + L D + + +A K +++ +DP L Sbjct: 323 SLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVFVDPRLP 382 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK--DNGPGIAEGEI 417 V D +RQVI NL++NA+KFT +GG V + + + I + D GPGI ++ Sbjct: 383 QVLGDPTRLRQVIGNLVNNAIKFTDLGG-VLIAIDRDPEDPRRIRVAVHDTGPGIPADKL 441 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 PT+ +F Q + G GLGL I ++ + GG + + S + EG P V Sbjct: 442 PTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGSTFAFSAPLHPV 501 Query: 478 LNFI 481 + Sbjct: 502 ADPA 505 >gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 913 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + L+I + I+ L + L V P+ ++T + LD + G L Sbjct: 172 VFVATLLLVICMCIALLFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + N T +Y+ I RS +LL +IN Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLNATQSDYLQTIERSANNLLTIIN 341 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EAG+ L L + + E ++L A EK IE+ I + V D Sbjct: 342 DVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHVIGDP 401 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLT 422 ++QV+ NLL NA+KFT G + V + + + + D G GI+E + + Sbjct: 402 MRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHDTGIGISERQQSQLFQ 461 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+ +G + Sbjct: 462 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHI 511 >gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1] gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1] Length = 1049 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 128/271 (47%), Gaps = 20/271 (7%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E +LE A + ++E +AE N AKS FLA+MSHE+RTP+N +G + ++ Sbjct: 488 QAEEELLQANEQLENATARANELAVQAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLL 547 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + E ++Y G + SG+ LL LIN+ILD S+IEAG+ E+ L ++ + Sbjct: 548 DTEL----TEEQRQYAGIVKSSGESLLVLINDILDFSKIEAGKLEIETLDFDLQSLLDDF 603 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + +K +E+ +P + + D +RQ++ NL+ NA+KFT G V + V Sbjct: 604 AATTAFKTHDKGLELLCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEK-GEVAIRVK 662 Query: 395 WTSGRGQ--------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 Q S++D G GI +I + F Q + G GL Sbjct: 663 TVGEACQTGQTSLNDDASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKYGGTGL 722 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL I++ + GG+ + S +G E Sbjct: 723 GLAISKHLAEMMGGEIGVESVEGQGSEFWFT 753 >gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1493 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 24/251 (9%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E +E + AE + AKS FLA+MSHE+RTP+NA++G + ++ + P + Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQR 767 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ I SG LL +IN+ILD S+IE+G+ EL + L + + EC+ +L RA EK + Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGL 827 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399 E+ IDPS + D +RQV++NL+SNA+KFT+ G V + V T Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVILAVKATHPDAKKDVKKS 886 Query: 400 ----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++D G GI I + +F Q + G GLGL I+Q + Sbjct: 887 DDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLS 946 Query: 450 ANHGGQFLIRS 460 G+ + S Sbjct: 947 QLMNGKMWVAS 957 >gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8] gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter aquaeolei VT8] Length = 922 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 32/327 (9%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + +L + ++ ++ S ++E L ++ + AE Sbjct: 515 TVVRRIILIAIVVVLIFLYWNRKLSLEVDERIRSEN-----ALRRSEDELRAAKLEAERL 569 Query: 246 NLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 KS FLA+MSHE+RTP+NA++G+S+++ + + + Y+ I Sbjct: 570 AREAEAASRAKSEFLANMSHEIRTPMNAVIGYSDLL----YNSVTDPQQRNYLNAIRAGS 625 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LIN+ILDLSRIEAG+ L +S+ ++ + + LRA E+ I + + + Sbjct: 626 RSLLMLINDILDLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDLRATEQGITLEVSVGSGM 685 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------------QYISI 405 ++ DE +RQV+ NL+ NA+KFT GG V V +++ Sbjct: 686 PSAMMLDETRLRQVLFNLVGNAIKFTHEGG-VTVRAVAKPLGEPADADSEVCYYRLVVTV 744 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GIA + + +F Q G GLGL I++ ++ GG+ ++S+ G Sbjct: 745 ADTGIGIAPDQQERIFEAFEQQEGQSSRRYGGTGLGLAISRKLVEMMGGRLTVKSEANVG 804 Query: 466 VEVIAILPN--TRVLNFIPEDNHESTQ 490 +LP V + E ++ Sbjct: 805 STFKVVLPRVEATVEQADDDGAPEESE 831 >gi|328470858|gb|EGF41769.1| putative sensor histidine kinase [Vibrio parahaemolyticus 10329] Length = 785 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 92/271 (33%), Positives = 133/271 (49%), Gaps = 7/271 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+ S + +AE AKS FLA+MSHELRTP+N +LG S++I ET P+ Sbjct: 246 MHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEPVT- 304 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE+I I SGQHL+ ++N+ILD S++E + EL E+ L ++ +Q Sbjct: 305 ---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQPLID 361 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK+IE+ + D P+ + D +RQ++ NL NAVKFT G V + Q Sbjct: 362 EKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLIRTELNGEDKQLL 420 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GIA + V SF Q + G GLGL I + + GG ++S Sbjct: 421 IIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKSVE 480 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G + I LP + P H Q + Sbjct: 481 GVGTQFIVTLPIPWNESEKPSPQHTPVQTRS 511 >gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 600 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + G + ET + ++ I+ Sbjct: 361 AIRRLEN---MRSEFVANVSHELKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDE 415 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L LI +IL+LS+IE+ R L S + + + + L A +K I + I Sbjct: 416 SERLNRLIGDILELSKIESKRSTLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDE 475 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIA 413 L + ADE ++Q+ LNLLSN + +T GG+V + V ++ D G GI Sbjct: 476 L-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIP 534 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++P + F + G GLGL I + ++ H G + S+L G LP Sbjct: 535 KKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594 Query: 474 N 474 Sbjct: 595 L 595 >gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1065 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + +++A N AKS FLA+MSHE+RTP+N I+G ++++ T + +E Sbjct: 675 QTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQLMQDTT----QDREQQE 730 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ S Q L L+++ILDLSR+EAG+ + E S D+ + ++ A+++ + Sbjct: 731 YVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAGSVAELFKVTAKDRGVS 790 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYI 403 + +DP L + D +RQ++ NL+ NAVK++ G V++ G Sbjct: 791 LECILDPGLPGEIIGDPARVRQILFNLVGNAVKYS-EHGNVNLHMTPVPAGRNEDIRVLF 849 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI E I T+ F Q QG GLGL I + + GG I S Sbjct: 850 IVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRRLTQLMGGNISIDSTEG 909 Query: 464 EGVEVIAILPNT-RVLNFIPEDNHE 487 EG V LP +PE + Sbjct: 910 EGTAVYVALPFKLPDKASLPEYEQQ 934 >gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 651 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 154/358 (43%), Gaps = 25/358 (6%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + + AL ++ L L + P+ + SL + Sbjct: 167 ILLKAGLLAAFALILTFLVARRLAQRL---SAPISTMGQAVEAIQSGDYKTSLPILDDGE 223 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + +L + E E A R+ AE+ N AKS FLA M Sbjct: 224 IGDLARHINNLASGLDRASR----------EQEQAIGQLISAREEAEQANRAKSDFLAMM 273 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTP+N +LG +++E EY S +HLL +IN+ILD SRIE Sbjct: 274 SHELRTPMNGVLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIER 329 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILN 374 G EL +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++N Sbjct: 330 GALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLEHLEVRGDPTRIRQILVN 389 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIA 430 LL NA+KFT G +H+++ W + + + ++ D+G GI+ + + +F Q + Sbjct: 390 LLGNALKFTEE-GSIHLSLEWQALDHEVLWLTCAVHDSGIGISPERLEHMFDAFQQADSS 448 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I G GLGL IA+++ GG +SK G +P +P S Sbjct: 449 ISRRYGGTGLGLAIARTLAERMGGTLQAQSKEGCGSTFTLEIPL-PFQQSLPHPQQAS 505 >gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1033 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 8/284 (2%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + E+ I + + + +++AE + AKS FLA+MSHE+RTP+ I+G Sbjct: 485 EQGEILYIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGA 544 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 E++ T ++E + + S + L +IN+ILDLS++EAG+ E+ Sbjct: 545 LEMVSART----DDEESRRLMKMTLESARSLQQIINDILDLSKVEAGKLEIEHQEFDPQS 600 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + + ++A EKNIE+ P + + D+ + QV+ NL+SNAVKFT+ G + Sbjct: 601 LFKRVMDLYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVI 660 Query: 390 -HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V + ++D G GI E +P + SF Q QG GLGL I+ Sbjct: 661 LRVRPVQAASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISN 720 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 ++ GG +S G LP + TQ Sbjct: 721 RLVQMMGGDIQAQSIPGAGSIFSFSLPFAIPAEHTAGEKRSDTQ 764 >gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus A1163] Length = 2333 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 14/301 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A + + +N ++ Q E E AK E + E+ Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1885 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G + ++ EY+ I LL LIN Sbjct: 1886 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQDEYVESIRVCADTLLTLIN 1941 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ + + +D V D Sbjct: 1942 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2001 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + + D G GI E + + Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2061 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG + S G V L + Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKAKES 2121 Query: 481 I 481 + Sbjct: 2122 L 2122 >gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 636 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 163/343 (47%), Gaps = 20/343 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV----VALSTQAIMSMHVLDISLAGMLAT 195 + ++++ + ++ P+ V+ + + DI Sbjct: 250 FAFLVATGIITVALSMAALYLIVKYVIVKPLNHLREVSEQVTSGNTSVRADIRTNDEFED 309 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + F + HL + ++ + D+ + EL E N KS FLA+ Sbjct: 310 LAASFNKMLRHLIDAQNQLHLANDDLDNKVDELARVNVQLYE-------MNRVKSDFLAN 362 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLN+ILGFS+V+ N+ K Y+ +I +SG+ LL++IN+ILDL++IE Sbjct: 363 MSHELRTPLNSILGFSDVLSD---IDSLNDKQKRYVQNIQKSGRLLLDMINDILDLAKIE 419 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 +GR E+ S S+ +VR M++ +EKN+++ + ++ D+ ++Q++ NL Sbjct: 420 SGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDVHDGGEPMFQDQTKLQQILTNL 479 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG-----SIA 430 LSNA+KFT GGR+ V + ++++D G GIAE + + F QG + + Sbjct: 480 LSNAIKFTPEGGRITCRVSREAD-MMKLAVEDTGVGIAEEDREIIFEKFRQGAVSPRNDS 538 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL I I G + S+L G +P Sbjct: 539 LTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTIRIP 581 >gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1084 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 10/251 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + + ++ AE + AKS FLA+MSHE+RTP+N I+G + + + Sbjct: 544 TQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQTELTS---- 599 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++Y+ I S LL ++N+ILD S+IEAG+ E+ + L ++ E + L A E Sbjct: 600 RQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAE 659 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K +E+ +I P + V D + Q++LNL+ NA+KFT G V V+V G Sbjct: 660 KGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFT-QSGHVLVSVTQERHEGSKTR 718 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G G+ +I + SF Q + G GLGL I + ++ GG+ +RS Sbjct: 719 LRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRS 778 Query: 461 KLREGVEVIAI 471 G + I Sbjct: 779 TPGHGSDFIFT 789 >gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] Length = 632 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 159/326 (48%), Gaps = 8/326 (2%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + + V+L + + + A ++ ++ ++ + Sbjct: 311 IKTHTILIGFLSIILALSVSLVLSEAIIGPIKKLKYAAEKISSGNYNIHVDVSSDDEIGE 370 Query: 214 ILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + I EL+ E+ ++ +E + KS ++ +SHELRTPL +I G Sbjct: 371 LAKAFNKMAEDIRKSHEELKRHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKG 430 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + E++ MG LN+ + + + + L LI+++LDLS+IE+G + + + Sbjct: 431 YVELVLDGLMGELNS-NQRRCLEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIK 489 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 D+V + + L + +EKNIEI +I+ +L + D+ + QV++NL+ NA+KF+ + G + Sbjct: 490 DMVVDVLNSLGPQIKEKNIEIKCEIEENL-TAKVDKDRITQVLINLIENAIKFSPVKGVI 548 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + +I IKD GPGI + ++ + F Q + K + G GLGL I +SI+ Sbjct: 549 EIHAFR-DNNYAHIIIKDYGPGIPKKDLDKIFDKFYQVNFP-KIKKDGAGLGLAICKSII 606 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475 HGG+ + S+L +G +LP Sbjct: 607 EAHGGKIWVESELGKGTSFHVLLPIE 632 >gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 631 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A + +FF + S+V +L A I L A S E ++AE+ N K Sbjct: 353 AVYIDKPQTFFQQHYVKIIASSVFLLLLIAAIVYYIRILRKAYSRLSEAVEKAEQANQLK 412 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLNAI+GFS ++ + +EY I + LL LIN+IL Sbjct: 413 SAFLANMSHEIRTPLNAIVGFSNML----PHTEDPVEMREYADIIETNTDLLLQLINDIL 468 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IEAG ++ S+I + + E ++LR + ++ + + D+ + Sbjct: 469 DLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPGCLFYIDKNRLI 528 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ N ++NA+KFT G + + T Y + D G G++ + V F + Sbjct: 529 QLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYVSDTGCGMSNEQCEHVFERFVK--- 584 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 QG GLGL I ++I+ GG+ + S+ +G LP + Sbjct: 585 -YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630 >gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 838 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 17/337 (5%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 ++ L + L+ P+ + + + A +LA + + Sbjct: 12 LAVLGTGSAIGSAILALPPMALP---APWPWLAPACMIAAAILAATAGWRAQQQIRELDA 68 Query: 211 NVKILSC-QAEKDDL---IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + ++E++ L + E + + ++ AE LAK FLA+MSHE+RTPLN Sbjct: 69 ALTRADLAESERNALQRDVHLRERLERELVQAKQAAEAAVLAKGEFLATMSHEIRTPLNG 128 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+ E+I + +E + + S LL ++++ILD S++EA R EL +A Sbjct: 129 IIPMLELIAHSPLDL----DQREMLRAANTSSLQLLRIVDDILDYSKLEANRLELETTAF 184 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385 +L +++ + + ++Q A+ K + + ++D ++ V D +RQV+ NLL NA+KFTA Sbjct: 185 NLRELLDDVLQLMQRAAEAKGLRMALQLDRAVRLPVRGDPVRLRQVLSNLLGNAIKFTAR 244 Query: 386 GGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GG + + V ++D G GI+ + +F Q + G GLG Sbjct: 245 GG-IDLHVRRLGESPAQHVLRFEVRDTGIGISAERQERLFQAFTQADASTTRLYGGTGLG 303 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 L I + I+ GG+ + SKL G +P +V+ Sbjct: 304 LAICKRIVELMGGRIGLESKLDHGAIFWFEIPLLKVI 340 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 11/323 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 S L+ ++ + + + + I + A+ Sbjct: 198 IATVFDSGEPLEEEMSLYSGDNEGLIHNVRMVPERDSSGNIVTVLAISRDITLQKQAQQA 257 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +K AE N +K+ FLA+MSHE+RTPLN I G +++ + N +++I Sbjct: 258 LLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLSTPL----NSEQQKFIEMG 313 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H++ + + L+++ILDLSR+EAGR ++S+ +L D+ +L ++++EK I + + Sbjct: 314 HQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIKSREKGIPLTFNL 373 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDN 408 PSL ++ D +RQ++ NL+ NA+KFT G+V + + ++ D Sbjct: 374 SPSLPDTLMGDSTMVRQILFNLVGNALKFT-EHGQVTLDIHPLPQSHQDQLQVLFTVSDT 432 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 GPGI + + + F + ++ +G GLGL + + GG + S +G + Sbjct: 433 GPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTISVDSAEGQGTSI 492 Query: 469 IAILPNTRVLNFIPEDNHESTQY 491 LP V P +N +Y Sbjct: 493 YVTLPFETVPETRPAENERVNEY 515 >gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 635 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE++ L Sbjct: 256 HDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIMALT----E 311 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E EY+ I ++ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 312 NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLK 371 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+++ D + QV+ N LSNA+K T G + + + G Sbjct: 372 -MKLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTET-GSITLGLKQ-EGDWLK 428 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI E ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 429 LFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVSSEL 484 Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489 +G LP IP + E + Sbjct: 485 GQGSTFALYLP----YQEIPVEVAERS 507 >gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 764 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 164/395 (41%), Gaps = 11/395 (2%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + +R ++V G+ L ++ T L+ I+ + Sbjct: 83 REQAPNTTLTHFRTPIMVQGSFQGILVGAWDLAPDLRAIDTHVNHILLLTSLLFGLITLM 142 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 FM+ + L Q + A L S+++ Sbjct: 143 VIFMVHRLAIQPVDAIYNRLIKQISPPQSKPETFHAARELRRLHQTVESFSRTAASHLEN 202 Query: 215 LSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 E + L+ + E ++ AE+ NLAK+ FLA+MSHE+RTPLN +LG S++ Sbjct: 203 ARTLQESEALLKQRVERRTRELRLAKEAAEQANLAKTEFLATMSHEIRTPLNGVLGMSDL 262 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + ++ IHRSG+ LL +IN+ILDLSRI+AGR L +A L + Sbjct: 263 LLESDLNSY----QRHHVETIHRSGRTLLRVINDILDLSRIQAGRMPLEVTAFKLRACLE 318 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + + +A+ K + L + D + Q++ NL+ NA+KFT G V V+ Sbjct: 319 DVQALFKDQARRKGLSFSINCQEELPQRLLGDATRLNQILFNLVGNALKFTER-GFVRVS 377 Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + I ++D+G GI++ + F Q +I G GLGL I + + Sbjct: 378 VQAEQVREADLLLRIQVEDSGIGISDEYKNRLFEIFSQQDSSISRRYGGSGLGLVITRKL 437 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 GG+ S+ G RV + +P+ Sbjct: 438 AQIMGGKLGFSSRSGAGSTFWVTARFGRVPDTLPD 472 >gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 916 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 160/350 (45%), Gaps = 27/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL+ L I+ L + L V P+ ++T + LD + G Sbjct: 176 AFVSTMLLLLCLGIATLFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---NMP 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + + E I ++E+ D +KRA+E Sbjct: 230 GELSMLKNGINSMAMSLTAYHEEVQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ + T +Y+ I RS HLL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLSPTQADYLQTIERSANHLLTIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L SL +++ E +I+L A +K +E+ + ++ V D Sbjct: 346 DVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLELTLNVHNNVPENVLGDP 405 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 M+QV+ NLL NA+KFT G + + V S + I D G GI+E + + Sbjct: 406 MRMQQVVTNLLGNAIKFTET-GNIDINVELRSQNNLQVELEVQIHDTGIGISERQQSQLF 464 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG S+L G Sbjct: 465 QAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFH 514 >gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 697 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 6/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + ++ AE N AKS+FLA MSHE+RTPLNAILG +V + + Sbjct: 308 ISIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNESLL----S 363 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E++ + S Q LL +I+++LD+SRIEAG + L E I L++ + + +++ Sbjct: 364 KEQYEWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKEKSK 423 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K I + + S+ V AD + Q+I NL+ NAVKFT G + + + T I Sbjct: 424 DKGINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKK-GSIWINITQTECNSTKI 482 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +I D G GI++ + + F Q +I G GLGL I + + G ++S + Sbjct: 483 AITDTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSVIN 542 Query: 464 EGVEVIAILPNTRVLN 479 EG LP Sbjct: 543 EGSTFTVTLPFKETKE 558 >gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 837 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F+ ++SHELRTPL +I+G+ ++ T GPL E +E++ + R+ L N Sbjct: 605 ELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQ-EQQREFLNIVARNTNRLAN 663 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LD+ RIE+GR + S SL +V++ +++A++K + + + + A Sbjct: 664 LINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLINA 723 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q+I NL+SNAVK+T GG V V+V + + + D G GI+ + + Sbjct: 724 DPDRLTQIIANLVSNAVKYTKEGG-VTVSVSAVGDQ-VELEVADTGIGISPADQKRIFEK 781 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + G GLGLPI ++++ HGG + S+ G I P Sbjct: 782 FYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGSRFIVSFPA 832 >gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 2001 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 17/295 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 +S + +L +E + E +++AE N AKS FL++MSHELRTP Sbjct: 1504 AELYQQSQNYAHQLKQINQELEQRVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTP 1563 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ILG++++++ + + IH SGQHLL LIN+ILDLS+IEA + E+ Sbjct: 1564 LNGILGYAQILKR---DSNLTSFQTQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYP 1620 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 I + ++++RA +KNI + D L + ADEK +RQV+LNLL NA+KF Sbjct: 1621 KGIHFPSFLDSVAGIIKMRAVDKNILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKF 1680 Query: 383 TAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G+V V + I D G GI + + F Q I+ +G Sbjct: 1681 TDR-GQVTFRVNAIQTEANQAQIRFEIVDTGVGITPEQATKIFQPFEQIGD-IERRAEGT 1738 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEV---IAILPNTRVLNFIPEDNHESTQ 490 GLGL I Q ++ G + + S + EG L V +PE E+ + Sbjct: 1739 GLGLAITQQLVELMGSELKVSSTVGEGSTFSFETVFL----VEETVPEMVVETPK 1789 >gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus Af293] gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus Af293] Length = 2333 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 14/301 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A + + +N ++ Q E E AK E + E+ Sbjct: 1826 IGISLANALLFREVRRVSATNAAMIEAQKRALAQAREAEHKAKVAEAEAKHNVKLKEDAA 1885 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G + ++ EY+ I LL LIN Sbjct: 1886 RAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQDEYVESIRVCADTLLTLIN 1941 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ + + +D V D Sbjct: 1942 DILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTIEDLDKVPPDLVVLGD 2001 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + + D G GI E + + Sbjct: 2002 PVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSRLF 2061 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG + S G V L + Sbjct: 2062 KPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFHLSFNKAKES 2121 Query: 481 I 481 + Sbjct: 2122 L 2122 >gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1101 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 97/332 (29%), Positives = 145/332 (43%), Gaps = 11/332 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 AL + L + + + V +L Sbjct: 494 ALIEVMRTAHPLLVTRRGMRLTGLACPGQTPEVWLGVPIRVRQEVLGIMAVMHFSDPGRY 553 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + ++L AE+ L E ++ A+ N AKS+FLA MSHE+RTP+NAI Sbjct: 554 GRKDAELLLSVAEQLALGVERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAI 613 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG +EV + E ++Y+ + S +HLLN++N+ILD S+IEA + EL Sbjct: 614 LGLTEVALRTEL----TEEQRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFD 669 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L +++R I L L A+EK + + I P L V D +RQV++NL+ NAVKFTA Sbjct: 670 LHELLRSAIKTLGLGAREKGLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAA- 728 Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V V G +G + D G GI + + SF Q + G GLG Sbjct: 729 GSVTVRAGLAAGAVGEPGRLVFEVADTGIGIRPDMLEVIFDSFRQADNSTARQYGGTGLG 788 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 L I++ + GG+ S G +P Sbjct: 789 LAISRELAGLMGGEIRAASTPGCGSRFTFTVP 820 >gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 929 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +S++ L + V P+ + + LD+ + G Sbjct: 175 IFSACLVLIMGLVLSSVFAVRLMHDV---TRPITHMKNMVDRIRRGHLDVRIEG---KMH 228 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + V + E I +LE+ D +KRA+E Sbjct: 229 GELDSLRKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +Y+ I +S +LL +IN Sbjct: 289 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIIN 344 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L + + E + + A EK +EI K+DP + + D Sbjct: 345 DILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGLVGDP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 ++QV+ NL+ N++KFT G + V + + ++D G GI+E + + Sbjct: 405 LRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDMVELQFMVRDTGIGISERQQAQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG+ + S+L +G L Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGSTFWFTL 514 >gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] Length = 872 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 7/360 (1%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 L + + L ++ + S + + +V+ + Sbjct: 247 LDQLGQAVSVVELRNKLVERQLLLFSRHLQNELGAEIKYSQRAMWAIAGVGIIAMVIMFA 306 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSNVKILSCQAEKDDLIAELEVAKSL 234 + + + + + + E + IA+ + + Sbjct: 307 WGTSTLYRINSKLSRILQVMSNLRGSSHVEQIPIDGRDEFAKFATELNYTIAKQKAYEQD 366 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + ++ AE N AKS FLA+MSHE+RTPLN I+G +E++ + + K+ + D+ Sbjct: 367 LVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSHL----SAAQKDILNDV 422 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S LL LIN+ILDLS+IE+G LS S+ +I+ + + M+ A ++ + + + Sbjct: 423 DASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHVEF 482 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + + DE ++QV++NL+SNA+KF+ G V + V G I + D G GIA Sbjct: 483 ADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQ-GNVIMRVSVVEHHGLSIEVADTGVGIA 541 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E ++ + F Q I G GLGL I ++ GQ + S L EG LP Sbjct: 542 EDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLGEGSRFTFTLP 601 >gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 840 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L +++ L ++RAE N AKS FL+ MSHE+RTPLN I+G +E+ Sbjct: 299 LRHREKLSSELLLAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAEL---GKSHTGE 355 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + + + I S HLL+LIN+ILD+S+IE+G+ EL L ++R + ++A Sbjct: 356 PDRMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQA 415 Query: 344 QEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 + I+ + D + Q++ NLLSNA+KFT G+V + V Sbjct: 416 VSRQIDYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSELRRDESG 475 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GIA I V +F Q + I G GLGLPI ++ + GG + Sbjct: 476 IWLRFEVRDTGRGIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMMGGSITV 535 Query: 459 RSKLREGVEVIAILPNT 475 SK+ G +P Sbjct: 536 SSKVGAGSIFTVDIPFA 552 >gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 998 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSL---SDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + + L E+E + + E ++ AE N KS FLA++SHE+RTP+N Sbjct: 557 RVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMN 616 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILGF +++ + + K+Y+ I S + LL LI++ILD+S+IEAG+ + Sbjct: 617 AILGFCDLLLQKDLSLSQT---KKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEP 673 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384 + L I+RE + +A+ K++ + +ID +L +++ D +RQ++ NL+ NA+KFT Sbjct: 674 VDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTE 733 Query: 385 IGGR-VHVTVG--WTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 G +++ V +G YIS + D G GIA + + F Q G Sbjct: 734 EGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGG 793 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I + + A GG+ + S+L EG I P R++ Sbjct: 794 TGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFPAVRLVE 835 >gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 1057 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 15/273 (5%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + +++ + + +E+ R AE + AKSRFLA MSHELRTP+ ++ Sbjct: 641 QRELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVI 700 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +++ +G + Y+ +H S LL ++N+ILD S+IEAG+ + + L Sbjct: 701 GMIDLL----LGTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRL 756 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPS------LSSVWADEKGMRQVILNLLSNAVKF 382 ++ + I + A +K +E+ + + D +RQV++NL+ NAVKF Sbjct: 757 QALLDDVIDLFAPAASQKGVELRVRQPERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKF 816 Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + + G ++D G GI +P + SF Q + G Sbjct: 817 TPA-GSIELRAEAQREDGGTWLLRFEVEDTGIGIPPDVVPMLFESFTQADASTTRRFGGT 875 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I + ++ GG+ +RS+ R G Sbjct: 876 GLGLAICKRLVTMMGGEIGVRSEPRRGSVFWFT 908 >gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 929 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 142/277 (51%), Gaps = 19/277 (6%) Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ + NV + ++E ++ I EL+ +++ E +++AE + KS FLA+M Sbjct: 653 WNWVRMNVVVTKFESEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLKSAFLANM 712 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLNAI+GFS ++ + E EYI + + LL LI++ILDLS+IEA Sbjct: 713 SHEIRTPLNAIVGFSGLLVDT----EDMEERCEYIKIVQENNDLLLQLISDILDLSKIEA 768 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G +E + + + + + Q++ + +E+ PS +V +D + QVI N + Sbjct: 769 GTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLHQVISNFV 827 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +NA+KFT+ G +HV + D G GI++ ++ + F + S Sbjct: 828 NNALKFTSS-GSIHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKL----NSFIH 881 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I +SI+ GG + S+ +G +P Sbjct: 882 GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918 >gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+A++SHELRTPL +I GF E + + + E ++ I + L LIN+I Sbjct: 228 RSDFVANVSHELRTPLTSIRGFIETLREGAIDNI--ERRDRFLEIIEFEAERLTRLINDI 285 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS IE + + I + + + E +++ A++KNI++ + ++ + + + Sbjct: 286 LTLSEIENLKEGFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDRL 345 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 RQ+I+NL+ N +K+T GG V VT I ++D+G GI++ IP + F + Sbjct: 346 RQMIINLVDNGIKYTPEGGYVKVTTT-DMENNIVIEVEDSGIGISKENIPRLFERFYRVD 404 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I+ + G + S++ +G + +LP + Sbjct: 405 KGRSRKLGGTGLGLAIVKHIVESMKGSITVESEVGKGTKFAIVLPKDQ 452 >gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] Length = 910 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN+ILD Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFTITDTGIGISPEDQTKLFTAFN 474 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 531 IEKNQTHRFA 540 >gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 919 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ +++ E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 671 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 726 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EYI + + LL LI++ILDLS+IEAG +E + + + + + Q++ Sbjct: 727 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 786 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + +E+ PS +V +D + QVI N ++NA+KFT+ G +HV Sbjct: 787 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 843 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI++ ++ + F + S G GLGL I +SI+ GG + S+ + Sbjct: 844 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 899 Query: 465 GVEVIAILP 473 G +P Sbjct: 900 GSRFWFTIP 908 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ ++ AEE KS FLA+MSHE+RTP+NAI+G S + + N Sbjct: 849 ITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGL----N 904 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I ++GQHLL +IN+ILD S+IEAG+ + + L ++ ++ +A Sbjct: 905 PRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAG 964 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K +E+ + ++ D + Q+++N +NA+KFT G + + V Q Sbjct: 965 AKGLELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTER-GEISIAVRVQEQDAQRV 1023 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G G+ ++ + SF Q + G GLGL I +S+ GG+ + Sbjct: 1024 RLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEVGVD 1083 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S+ +G LP R Sbjct: 1084 SEYGKGSTFWVSLPLERGAPA 1104 >gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] Length = 912 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 131/253 (51%), Gaps = 13/253 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T + Sbjct: 500 ITEMERMKQELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 555 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + + + + LL LINEILDLS+IEAG E + + + L + RE L+ R Sbjct: 556 EERKSFYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCP 615 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 + +++ + ++ D+ + QVI NL+ NA KFT G V+ G G G Sbjct: 616 Q-GVKLIYEPSDEEITIEGDKNRIFQVISNLIGNAFKFTTQG---KVSYGYRRKGDGIEF 671 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI G++ V F + + S QG GLGL I ++I+ GG S++ Sbjct: 672 HVSDTGIGIEAGKLDKVFERFVK----MNSFAQGTGLGLSICKTIIERLGGTISASSEMG 727 Query: 464 EGVEVIAILPNTR 476 +G LP + Sbjct: 728 KGTTFTFTLPEKQ 740 >gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 582 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 138/252 (54%), Gaps = 2/252 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + + + +AE N A+S F+ ++SHELRTPLN+ +GFSE++ E +GPL Sbjct: 326 RDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLGPL 385 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ K+Y+ ++ SG+HLL+LINEIL++S+IE G EL + + V + +++ Sbjct: 386 -NDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDIYTTVEDVEMLMAPI 444 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 E E+ I+ ++ AD ++Q++ N+LSNA+KF+ + + + G+ Q Sbjct: 445 LAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENENIIMDIKVIDGKLQT 504 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +I D G G++E E + F Q ++G GLGL I + + H G+ I S+ Sbjct: 505 -NITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRFVQLHKGKIWIDSEE 563 Query: 463 REGVEVIAILPN 474 +G +P Sbjct: 564 GKGTTFCFTIPL 575 >gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 929 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +LI + ++ L F L V P+ + A + LD L G L Sbjct: 176 HRAAVAAFIIVLIGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLQGNLI 232 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 233 GELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 292 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 293 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 348 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S++EAG+ L L + + E I ++ AQ K +E+ I P++ V D Sbjct: 349 DILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDS 408 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + + + + D G GI E + + Sbjct: 409 MRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQ 468 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 469 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 520 >gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1064 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 10/258 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + R++A+ N AKS FLA MSHE+RTPLNAI+G +++ + P+ Sbjct: 536 MTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGDLLGETALSPV-- 593 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ +G+ L+ LI +ILDLSRIE G EL + + +V E ++ A Sbjct: 594 --QRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALVEEVCEVVTSSAH 651 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 +K + + +IDP L V D+K +RQ++ NLL NAVKFT G + ++ Sbjct: 652 DKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLDIRHDAARSAAGA 711 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G G+AE I V F QG I G GLGL I + +++ GG + S Sbjct: 712 VLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRLVSKMGGDIQLES 771 Query: 461 KLREGVEVIA--ILPNTR 476 L G +LP R Sbjct: 772 ALGRGTTATVQLVLPVGR 789 >gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1917 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 168/403 (41%), Gaps = 27/403 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ +LT + T IA+ ++ ++ M + Sbjct: 1102 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1161 Query: 167 FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L TQ A L + L ++N L +AE + Sbjct: 1162 SQSLAEELQTQQSELRETNKRLEQQAQSLKASEDLLRGQQEELQQTN-AELEEKAELLAI 1220 Query: 225 IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E+E ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1221 QKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTD 1280 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G L EY I+ +G LL LIN+ILDL++IE+G + + I L ++ + Sbjct: 1281 NVDGNLT-AKQVEYSQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIE 1339 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 AQ K + ++ P L + V D K ++QV+ NLLSNA KFT G V + + Sbjct: 1340 RGFGQVAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTER-GEVRLKIEV 1398 Query: 396 TSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 ++ D G GIA + + +F Q G GLGL Sbjct: 1399 AKPGWNSNQQPLNSAQNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGL 1458 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 I++ I GG+ + S +G LP + + + + Sbjct: 1459 SISREIAHLLGGEIKLTSYPGQGSTFTFYLPQFSAESTLTQAD 1501 >gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1203 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ Sbjct: 667 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTL--- 723 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S LL +IN+ILD S+IEAG+ EL A L ++ + + L+AQ Sbjct: 724 -QQKDYLEKADFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 782 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ + + D + QV++N+LSNAVKFT G + + R I Sbjct: 783 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-KSGEIELGCEDVGERDHRI 841 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI++ + + +F Q + G GLGL I++ +++ GG + Sbjct: 842 TLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVE 901 Query: 460 SKLREGVEVIAIL 472 S++ G + Sbjct: 902 SEMGVGSTFSFTI 914 >gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] Length = 670 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 15/312 (4%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 I+ +G+ + + L L ++++I+ LE+ K + K+ Sbjct: 115 GAPLITPSGLALGTICTISNEPKTLTDWQRNALVVL--RNEVISRLELRKKI-----KQL 167 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N KS F++++SHE+RTP+N ++G +++ + N+ Y I RSG LL Sbjct: 168 ESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLLETPL----NDKQLRYAQAIKRSGDSLL 223 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN++LDLS++EAG+ + ++ +L ++V + A EK +E+ I Sbjct: 224 RVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDIQLKSDRFI 283 Query: 363 ADEKGMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 D ++Q++ NLLSNA+KFT G R+ V S+ D G G++E + Sbjct: 284 GDHYRLKQILNNLLSNAIKFTDKGWTALRIKVVSETDDQATLKFSVSDTGLGLSEKQQSQ 343 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-L 478 + F Q + I G GLGL I + ++A G ++S+ +G LP V Sbjct: 344 LFKRFQQANETITREFGGSGLGLSICKQLLALMDGDIGVKSEPGKGSTFWFTLPLQVVRE 403 Query: 479 NFIPEDNHESTQ 490 E+ E+ Sbjct: 404 EPAVEELTETPD 415 >gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5] Length = 651 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 12/259 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + E + +AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 268 VTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLLAET----DDI 323 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + + + LL LI++ILDLS+IEAG +E + + + + E + L L+ + Sbjct: 324 GERREYMRVVEENNELLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKVK 383 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K +E+ + V D+ + QVI N ++NAVKFT G + + T G Sbjct: 384 DKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVKFTDE-GSITLGY-RTEGGELLFH 441 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E ++ F + S QG GLGL I++SI+ GG+ + S++ Sbjct: 442 VEDTGSGISEEHRQSIFDRFVKL----NSFAQGTGLGLSISKSIVEQMGGRIGVESEVGR 497 Query: 465 GVEVIAILPNTRVLNFIPE 483 G +P V PE Sbjct: 498 GSRFWFTIPA--VTCDAPE 514 >gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 164/385 (42%), Gaps = 10/385 (2%) Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 L+ + A+ L + Y + + + + F Sbjct: 263 TREAEHQRLILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQ 322 Query: 163 VFLSFFPVVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 + A + A ++ + + +G ++ +++ Sbjct: 323 QVAARRDESDAEADLDHDAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGGTVTLV 382 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 I +L+ + D+ R AE N KS FLA+MSHELRTPLNAI+G+S+++ + Sbjct: 383 MD---ITDLKQREIELDQARAEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLREDAA 439 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N+ + + I +G+HLL+LIN+ILDLS+IEAG+ ++ I++ +++ + +++ Sbjct: 440 DDGNDGAVAD-LTKIEGAGKHLLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLLI 498 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG- 398 + A + + S + D ++Q +LNLLSNA KFT GG + ++V Sbjct: 499 EPVAARNDNRLVVACAAGASRMVTDVTKLKQSLLNLLSNAAKFT-KGGLLTLSVDPDPDR 557 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ D G G++ ++ + +F Q + G GLGL I +S GG Sbjct: 558 AGNLCFAVSDTGIGLSPEQVGRLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDIA 617 Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482 + S L G + LP + P Sbjct: 618 VTSALGAGSTFVITLPAHPPVKAPP 642 >gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 637 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 17/316 (5%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEK 221 V + ++ + I +A +L L Y+ HL ++ + + + + + Sbjct: 9 VMSVNLHVAAAPWKTWWAYSIYIAFLLGIVL-MIIYLRTHLQQTEITKQKRFVQALEQQV 67 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + A L+ + + ++AEE KS FLA+MSHE+RTP+N ++G +++ + Sbjct: 68 SEKTASLKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTT 127 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + S LL LIN+ILD S+IEA + E+ + +++ + Sbjct: 128 ----EQSQRVNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAH 183 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 AQEK +++ + S S + +D ++Q++ NLLSNAVKFT G + VT Sbjct: 184 LAQEKGLDVVVDLSKVSESKINSDPSRIQQILTNLLSNAVKFTEQ-GELSVTAELLPTNN 242 Query: 401 Q-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 Q +I++ D G GI ++P + +F Q + G GLGL I + + GG Sbjct: 243 QNTALMHIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGD 302 Query: 456 FLIRSKLREGVEVIAI 471 + ++L +G Sbjct: 303 ISVTTELGKGSRFDVT 318 >gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 780 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 101/359 (28%), Positives = 159/359 (44%), Gaps = 22/359 (6%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-----FPVVVALSTQAIMSMHV 184 + S L++AL+IS L L + V+ + Sbjct: 157 LWSQLYMSLLISSLVLVVALTISILLAKRLLPLITDPLEELANLAHRVSEDRNYSLRARK 216 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + GML +++F ++ + +L + + E R+RAE Sbjct: 217 RNSDEIGMLVDSINFMLASVRQRDQAINET------NRNLEQLVADRTAKLVEARERAET 270 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 KS FLA+MSHELRTP+NAI+G S V++ E + +E+ I I +S +LL+L Sbjct: 271 ALETKSDFLATMSHELRTPMNAIIGMSSVLQFEDL----DESRARQIEVIRKSSVNLLDL 326 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 IN+ILD S+IEA R EL +A L+ + E + + + + DP+L + Sbjct: 327 INDILDFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFDPTLPSHIKG 386 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIP 418 D +RQ+++NLL+NA KFT G V + V IS++D G GI E + Sbjct: 387 DVTRVRQILVNLLNNAFKFTKK-GTVTMDVFHLPADRRGSERIQISVRDTGIGIPEESLK 445 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 ++ SF Q + + G GLGL I+ + GG + S+ G +P RV Sbjct: 446 SIFESFTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVESEYGTGSVFHFTMPINRV 504 >gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 836 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 129/268 (48%), Gaps = 8/268 (2%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 L + I + + + A+ N+AK++FLA+MSHE+RTP+N +LG Sbjct: 425 ANGELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMSHEIRTPMNGVLGM 484 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +V+ E ++ KE + I SG HL++++N+ILDL+++E + EL ++ Sbjct: 485 VQVMLSEA----KDKQQKENLSLILESGNHLISILNDILDLTKVEQNKIELESCPFNIEQ 540 Query: 331 IVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-R 388 I+ Q QEK IE+ + + + D +RQV+ NLL+NA+KFT GG Sbjct: 541 IIAPLRSTYQAVCQEKGIELNIECHIDANMTFLGDRNRVRQVMYNLLNNAIKFTERGGVT 600 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V +T T+ S++D+G GI + + F Q + G GLGL I + + Sbjct: 601 VVITNNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTREYGGTGLGLAIVKQL 660 Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPN 474 + GG S+ +G LP Sbjct: 661 VEKMGGTIDATSEQGQGTRFEFEIKLPV 688 >gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 900 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 8/280 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + S I E + A++ S + + A+ N AKS FLA+MS Sbjct: 220 GWMLIQGQIMTLSLQGSAQKVIGTLQDITEQKNAEAASRQAVEAAKAANQAKSEFLANMS 279 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N ILG +++ + ++YI H S LLN+INEILD S+IEAG Sbjct: 280 HEIRTPMNGILGMTQLCLETDLTA----DQRDYINMAHSSASALLNIINEILDFSKIEAG 335 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLL 376 + L+ ++ +++E L + EKNIE+ I P + + D +RQV+ NL+ Sbjct: 336 KLTLNAEDFAIRPLIQEITRPLMPKFSEKNIELLVDIHPDVAIEIHGDPLRLRQVLTNLI 395 Query: 377 SNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V + + S+ D+G GI E + + SF Q + Sbjct: 396 GNALKFTLH-GEVVLRILPVPDALHRLLFSLHDSGIGIPEDKQKVIFESFSQADNSTTRK 454 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+ ++ GG+ + S++ +G LP Sbjct: 455 YGGTGLGLTISSRLVEKMGGELHLTSQVGQGSCFSFSLPV 494 >gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1494 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 24/251 (9%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E +E + AE + AKS FLA+MSHE+RTP+NA++G + ++ + P + Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQR 767 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ I SG LL +IN+ILD S+IE+G+ EL + L + + EC+ +L RA EK + Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGL 827 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399 E+ IDPS + D +RQV++NL+SNA+KFT+ G V + V T Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVILAVKATHPDAKKDVKKF 886 Query: 400 ----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++D G GI I + +F Q + G GLGL I+Q + Sbjct: 887 DDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLS 946 Query: 450 ANHGGQFLIRS 460 G+ + S Sbjct: 947 QLMNGKMWVAS 957 >gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 608 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 2/232 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ F+A++SHELRTPL I + E + + + + + ++G + ++ Sbjct: 371 EKLERSRKEFVANVSHELRTPLTTIKSYLEALGDGAI--EDPQLSERFLGVTRNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ + L ++ ++ D++ E ++++++ I I +D + S+ Sbjct: 429 RLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKIRIDVSVDARVGSIS 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ NLLSNA+K+TA G V + IS++D G GI + ++ + Sbjct: 489 IDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFE 548 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ HGG + S+ G V LP Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRVSFTLPV 600 >gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] Length = 2330 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 14/301 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1821 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1880 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G N EY+ I LL LIN Sbjct: 1881 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLNREQDEYVESIRVCADTLLTLIN 1936 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + +D V+ D Sbjct: 1937 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVFGD 1996 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + + D G GI E + + Sbjct: 1997 PVRLHQIFMNLLSNSYKFTPKGSVTVAARVTREGKGRVRLECAVTDTGIGIPEEQKSRLF 2056 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG + S +G V L +V + Sbjct: 2057 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGKGTTVTFHLSFNKVKDP 2116 Query: 481 I 481 Sbjct: 2117 A 2117 >gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 936 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEELS--- 743 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 744 -ERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 803 E-EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 915 KGSRFWFTIPGVIVTEEV 932 >gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1229 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 105/422 (24%), Positives = 160/422 (37%), Gaps = 22/422 (5%) Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI-AIGLCWTLLTLVEPGTWT 133 W L A L ++ E L V + GL T L+ Sbjct: 324 WPLYASASALVLLLAVIGAYLHASRMLERQDAAQALAVSEARFRGLVETSPDLIWETDMD 383 Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 A L +AL + + + T + + Sbjct: 384 GVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAPEDTPETWEATLPGAGEGGGKALE 443 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + T L + V I E + A+ L D R+ A N AKS FL Sbjct: 444 VSCVPRRTPEGEALGRRGVA---------RDITERKNAQCLLDAARQEAVRANQAKSEFL 494 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A MSHE+RTPLNA++G S + + P ++Y+ I S LL +IN+ILD S+ Sbjct: 495 ARMSHEIRTPLNAVIGMSHLALKTELTP----RQEDYLTKIRSSADTLLAVINDILDYSK 550 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372 IEAGR+ + L ++ + ++ A EK +E + + + D + QV+ Sbjct: 551 IEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPSWLVGDPLRLGQVL 610 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 LNL+ NAVKFT G V V V +++D G G+ + + F Q Sbjct: 611 LNLVGNAVKFTDS-GEVLVEVRLEKAVADAARLRFAVRDTGIGMTPEQKHNLFRPFAQAD 669 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNH 486 +I G GLGL I ++ GG + S +G E LP ++ DN Sbjct: 670 GSISRRYGGTGLGLSICHRLVELMGGNLAVESVSGQGSEFYFSLTLPVSQEGKTGCTDND 729 Query: 487 ES 488 E+ Sbjct: 730 EA 731 >gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] Length = 587 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + +E KE I+ + Sbjct: 360 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIVDDI--AATDEEKKELAKVIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG L + L V I Q A+EK + + +++ L V Sbjct: 418 LVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMNDELI-VSF 476 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T GG V V V IS++D+G GI E ++P V Sbjct: 477 DPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEE-VVRISVQDSGSGIPEEDLPFVFER 535 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA++I+ H G + SKL EG LP Sbjct: 536 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLPLK 587 >gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens] Length = 917 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 164/373 (43%), Gaps = 22/373 (5%) Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169 L W L L + G + + A L L+AL + N L Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLIIAGLICTGLLALRMGRTINNPLSQIKHAVTQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L T+ + LA + L S + + + I E Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + ISI Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 E LP TR Sbjct: 502 SEFWISLRLPKTR 514 >gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 770 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 174/364 (47%), Gaps = 9/364 (2%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 + W + L + E+ I + + L A++ S + +L V L+ P+ + Sbjct: 181 IGWVRIGLSKEVMSRSEHRIIIRGSML--AVAFSIVGALLLYLFVSLATRPLYALIDAVK 238 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDE 237 + + + T + ++ + + +D L + + Sbjct: 239 EVREGEHPEVPVLSPKSEIGRLTAEFNRMSRAIKEREDELKRHRDHLEELVAERTAELTI 298 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++AE N AKS FL+SMSHELRTPLNAILG+++++ + ++ ++ + + S Sbjct: 299 AKEQAESANRAKSDFLSSMSHELRTPLNAILGYAQILR---LHNNLSDIQRQQLDIMRNS 355 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+HLL LIN+ILD+ +IEA + ++ ++ L ++ + + +L+A+EK ++ + + Sbjct: 356 GEHLLTLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQFHYEPETP 415 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEG 415 L V DE+ +RQ++LNLLSNAVK+T G + V+ G + D G GI Sbjct: 416 LPAYVHGDERKLRQILLNLLSNAVKYTRRGSVTMRVSYGRAGDGLFRCEVADTGIGIPAD 475 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + F Q + + +G GLGL I + ++ G + S +G +P Sbjct: 476 KLGVIFEPFTQLTNDRQGR-EGTGLGLNITKRLLTLIQGTMGVESIPGKGSTFWLEVPLA 534 Query: 476 RVLN 479 +L+ Sbjct: 535 SLLD 538 >gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 649 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 99/272 (36%), Positives = 152/272 (55%), Gaps = 1/272 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 A++ + EL A+ E ++AE N +KS FLA++SHELRTPLNAI+GFS+++ + Sbjct: 378 ADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKV 437 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 GPL +E Y+ Y DI SGQHLL+LI ++LDLSRIE G+ L + L ++ + M Sbjct: 438 FGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLVDLPIEIQAAVAM 497 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ R ++ I ++ ++ AD + +RQ+++NL+SNA KFT GR+ VT Sbjct: 498 VRARRGQEIASIQIEVAEGFPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDD 557 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++ D+G GI + VL F Q + +GVGLGLP+ ++ + H GQ + Sbjct: 558 G-ISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQL 616 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S + EG + LP R+ P T Sbjct: 617 ESAIGEGTTITIRLPKERIDGTRPGALAAGTD 648 >gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str. 'morsitans'] gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] Length = 925 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 141/265 (53%), Gaps = 10/265 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ + + ++E+ D +KRA+E KS+FLA+MSHELRTPLN ++GF+ Sbjct: 261 QATSDLRETLEQMEIQNVELDLAKKRAQEAVRIKSKFLANMSHELRTPLNGVIGFT---- 316 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +T+ + T ++Y+ I RSG HLL++IN++LD S++EAG+ L +L I+ E Sbjct: 317 RQTLKTPLSPTQRDYLQTIERSGNHLLSIINDVLDFSKLEAGKLMLETIPFALRAILDEV 376 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +I+L A EK +E+ ++ + V D ++QV+ NL+ NA+KFT G + + V Sbjct: 377 VILLAHTAHEKGLELILQVQREVPEYVIGDPLRLQQVMTNLIGNAIKFTEQ-GHIIIRVS 435 Query: 395 WTSGRGQYISI----KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + I +D G GI E + + +F Q +I G GLGL I Q ++ Sbjct: 436 CQGHERERVEINVQIRDTGIGIPERQQSQLFQAFRQADASIARRHGGTGLGLVITQKLVH 495 Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475 GG+ RS+ G +P Sbjct: 496 EMGGEITFRSRTGRGSTFWFHIPLQ 520 >gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1075 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 133/277 (48%), Gaps = 6/277 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + I+ + + I + + E +++AE N AKS FLA M Sbjct: 647 AFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVM 706 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NAILG +E++ + + ++RSG+ LL+LIN+ILDLS+IEA Sbjct: 707 SHEIRTPMNAILGMAELLRESDLTS----RQHWCVETLNRSGESLLSLINDILDLSKIEA 762 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 R L L+ +V + + AQ K + + I P+L V D +RQ+++NL Sbjct: 763 ERLTLEHVVFDLVQLVGDVCSLFGYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNL 822 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 + NAVKFT G V V + + I+D G G++ + + F Q +I Sbjct: 823 VGNAVKFTKQ-GHVSVELNPLADGRLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREH 881 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I ++A GG+ + S L EG L Sbjct: 882 GGTGLGLTICMRLVALMGGEMQLESTLGEGSCFHFEL 918 >gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1253 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 134/260 (51%), Gaps = 14/260 (5%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ AE + AKS+FLA+MSHE+RTP+NA++G S+++ + + ++Y+G Sbjct: 513 EIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPL----DAKQRDYLGK 568 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S + LL +IN+ILD S+IEAG+ +LS SL D++ + + A ++IE+ Sbjct: 569 IRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFD 628 Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDN 408 + SL V D +RQV++NLLSNAVKFT G+V +++ ++D Sbjct: 629 LAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQ-GQVVLSIRQLDAGTASARLRFEVRDT 687 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA + + F Q + G GLGL I+Q ++ GG ++ S G Sbjct: 688 GIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPGAGSRF 747 Query: 469 IA--ILPNT--RVLNFIPED 484 LP + + P D Sbjct: 748 YFDLTLPVSSDQTRPSSPGD 767 >gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 336 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE + AKS FLA+MSHE+RTP++ I+G + + + + +E++ + +S LL Sbjct: 1 EEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDL----TDEQREHLETVAQSADCLL 56 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 +++N ILDL++IEAGR EL S+ D V I MLQ++A +K + + ++DP + + Sbjct: 57 HIVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHL 116 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 D ++Q ++NL+ NA+KFT G + V + S++D G GI++ + Sbjct: 117 IGDAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQK 176 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 V +F Q + G GLGL I + ++ GG+ + S+ +G I Sbjct: 177 EVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYFI 229 >gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis TAC125] gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas haloplanktis TAC125] Length = 1107 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ + + +AEE AK F+A+MSHE+RTP+NAI+GFS+++ + + Sbjct: 514 ITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDTPL----S 569 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++++ ++ + + LL L+NEILD +++E G+ + +L ++ I L A+ Sbjct: 570 KEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLEAK 629 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +KN+ + I+ S+S+ + D +RQ++ NL+ NA+KFT G V VTV T + Sbjct: 630 KKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQ-GAVTVTVSTTQNNHLFF 688 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GIA+ I V F Q G GLG I++ ++ G + S++ Sbjct: 689 EVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEVD 748 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 749 KGSCFYFSLP 758 >gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] Length = 1385 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 137/240 (57%), Gaps = 10/240 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ N AKS FLA+MSHE+RTPLN ++GF+E++ + +E ++Y+ I +S Sbjct: 395 KEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTEL----DEEQQDYVDTIEQSS 450 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++LL +IN ILD+S+IE+ + EL + + I + + +A EKNI+I IDP+L Sbjct: 451 ENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKATEKNIDILLYIDPTL 510 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGI 412 ++ D +++V++NL+SNAVKFT GG + V + S++D G GI Sbjct: 511 IHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVEDTGVGI 570 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 AE ++ V +F Q I G GLGL I+ +A GG+ ++S L +G L Sbjct: 571 AEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKGTRFYFTL 630 >gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 558 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 12/355 (3%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 L ++ + L++ LS+ L V+ + + + Sbjct: 202 AALGSFRNRLFVFSAILLVVTLSVIMFVTSRLVARPLQELTNRVLEVGKGNLNADFGDIH 261 Query: 188 SLAGMLATALSFFTYITY------HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + F + ++ + + + E + + ++ ++ + Sbjct: 262 AYGEVATLSREFSDMVAKIKDLYDNMERKVKSRTRELEAANLRLTEGKKSLAVLNQ---K 318 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E + KS F+A+M+HELRTPL +I+ F E++ E GP+ NE +E + DI S Q L Sbjct: 319 LSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPI-NEEQQENLMDIKTSAQQL 377 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 + LIN+ILD+++ EAG L + + L D+ R + A + + + L V Sbjct: 378 MLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLDVS-AVDLPLV 436 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 + D + +RQ++ NL++NAVK + GG VH+ + IS++DNG GI +P + Sbjct: 437 YGDPERLRQMLSNLIANAVKHSKEGGYVHIYAKADNE-FAAISVEDNGDGIPPELMPHIF 495 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F QG ++K G GLGL + +++ G + S++ EG +P + Sbjct: 496 EKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHIPFAK 550 >gi|119476448|ref|ZP_01616799.1| two-component system sensory histidine kinase [marine gamma proteobacterium HTCC2143] gi|119450312|gb|EAW31547.1| two-component system sensory histidine kinase [marine gamma proteobacterium HTCC2143] Length = 458 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 5/258 (1%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM-G 280 + + +L A + + ++ A+ N AKS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 197 NAMSGKLRQAMADVKKLKEDADFANNAKSDFLANMSHELRTPLNAIIGYSEMMLEEIDPD 256 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 +NNE + + +I +G+HLLN IN++LD S+IE+G L I+ E I + Sbjct: 257 DVNNEGQQSDLKNILIAGKHLLNQINDVLDFSKIESGNMTLYAELFDSNAILSEVIATMT 316 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A +++ + D + + D R + NLLSNA KF+ + ++ Sbjct: 317 PLAGQRDNTLIYSGDQKIPLLKNDATKFRHIFTNLLSNACKFSEQN-AIQISARLGPSGH 375 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ D+G G+ E ++ + +F Q + G GLGL + + GG+ Sbjct: 376 STMAIFTVSDSGIGMTEKQLSIIFEAFKQADSSTTRQYGGTGLGLTLCKQYCDLMGGKIQ 435 Query: 458 IRSKLREGVEVIAILPNT 475 + S++ G +P + Sbjct: 436 VNSEVGGGTTFTVHMPLS 453 >gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638] gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 918 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TSPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + T+ N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRL----TLKSELNPTQRDHLHTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L + +K +E+ I + V D + Sbjct: 350 DFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIPTVLTSFG 425 +QVI NL+ NA+KFT G V V S I + +D G GI E + + +F Sbjct: 410 QQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQIRDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+ G + Sbjct: 470 QADASISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTFWFHI 516 >gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 767 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 11/270 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + AE N KS FLA+MSHE+RTP+N ++G ++++ + Sbjct: 357 RDITERKRAEDELLRAKAAAETANTTKSEFLANMSHEIRTPMNGVIGNAQLLRFTDL--- 413 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E Y+ I +HL+++IN++LD+S+IEAG+ EL +++ SL + + + + R Sbjct: 414 -TEEQSRYLEYIEADAKHLVSVINDLLDISKIEAGKMELEQTSFSLRGCINDLLKPMTPR 472 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 K + +I ++ ++ D+ ++Q++ NL+ NA+KFT G + + V Sbjct: 473 IATKGLIFNTEIANTVPDALTGDQLRLKQILRNLVGNAIKFTDQ-GSITLRVELLEHSEN 531 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Y S+ D G GI + + + T F Q ++ G GLGL I + GG Sbjct: 532 KALFYFSVIDTGIGIPQEALERLFTPFTQADSSVTRKFGGTGLGLSICNRLAGLMGGNIS 591 Query: 458 IRSKLREGVEVIAILPNT-RVLNFIPEDNH 486 + S G LP R +P++ Sbjct: 592 VESSEGAGSCFHVTLPFQTRQAGTLPQEEP 621 >gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon GZfos9E5] Length = 424 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + EK L+ ELE + + + EE K+ FL+ SHELRTPL + + Sbjct: 153 RAEEEKRRLMEELETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQ 212 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ MG L+ + ++ I + R+ L NLI +ILDLSRIEAGR +LS +++L D V Sbjct: 213 MLQEGYMGKLD-KKQEKSIEVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAV 271 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +E I M + A+ KNIEI K+ + ++ D + +RQ I NLL+NA+KF+ G+V + Sbjct: 272 KEAIKMQEAFAKGKNIEISAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIE 330 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G+ SI D G GI++ + + F Q ++ G GLGL I + I+ H Sbjct: 331 TKRL-GKNVQFSITDYGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAH 389 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480 G+ S+L +G ++P + + Sbjct: 390 NGKIWAESELGKGSTFYFVIPTKQKITE 417 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 11/269 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + E ++ AE+ N AKS FLA+MSHELRTP+NAILG ++ + + N Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + Q LL L+N+ILD S++EAG+ E+ + SL +++ E I+L Q Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K++EI +ID + + + D +RQ++LNL NA+KFT G V V++ S G Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEA-GEVKVSIQTESHNGDRC 683 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D G G+ E + V F Q +I G GLGL I + ++ G ++ Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743 Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDNHE 487 S+ G E + V PE + E Sbjct: 744 SEQGVGSEFSFTVNLGCVDEERQPEPSAE 772 >gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 678 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 10/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +A + KS+FLA+MSHE+RTP+N I+G S ++ + P Sbjct: 25 ITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLDTRLSP--- 81 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E+ + +S + LL +IN+ILD S+IE+GR + E L +V + + +L RA Sbjct: 82 -EQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLALLGERAI 140 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 +K IE+ + L + + D +RQ+I NL+ NA+KFT G V VTV Sbjct: 141 DKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTER-GEVSVTVTRIQETNTTL 199 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS++D G G+A+ P + F Q + G GLGL I++ ++ GG+ Sbjct: 200 HFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIGFT 259 Query: 460 SKLREGVEVIAILPNTRVLNFIP 482 +K G L ++L P Sbjct: 260 TKPGRGSTFWFDLCLPKLLEATP 282 >gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1116 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 157/379 (41%), Gaps = 23/379 (6%) Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL------IALSISALSNF 157 L +A T T T T SA ++ I+L+ + + Sbjct: 308 RHLWKIHLAYAVAALTLVTTHTFSWSQTVTLAQFLFLASAIIILTKSVQISLAGNVEAKL 367 Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L+ + L + + G L L+ + ++ + + Sbjct: 368 FTLGFGLLTLSAMNDILIYRLEWVNWYQKLYPWGTLLFILTLGVMLERQFIQARNLLQNY 427 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E + + + K FLA+ SHEL+TPLN I+G +E + Sbjct: 428 AIE--------------LETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDG 473 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L++ T + + I SG+ L L+N++LD S+++ +L+ + + ++ + Sbjct: 474 VTGNLSDAT-RFNLSLIVSSGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLT 532 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + Q +K IE+ I+P + V ADE ++Q++ NL+SNA+KFT G + V+ + Sbjct: 533 ISQPLVGKKPIELINGINPDIPPVDADENRVQQILYNLVSNAIKFTEQ-GTIEVSATPVN 591 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 R I + D G GI+ +I + SF Q +I G GLGL I + ++ HGG Sbjct: 592 DR-LEIHVVDTGIGISPDKINRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIK 650 Query: 458 IRSKLREGVEVIAILPNTR 476 + S G LP ++ Sbjct: 651 VDSTPGVGSRFTFTLPLSQ 669 >gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens] Length = 917 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 13/389 (3%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + L ++ + LL+ + + + T L+AL + Sbjct: 133 HRNLAGELIPEEADRLLGWVELELSHSGMLLSGYRSMFASLLLIAVCLGLTALLALRMGR 192 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 N L L T+ LA + L S + Sbjct: 193 TINRPLSQIKHAVAQLKDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEELQHSIDQ 252 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ + Sbjct: 253 ATEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHL 309 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ + P +Y+G I +S LL +INEILD S+IEAG+ L +L D+++ Sbjct: 310 LQKSELTP----RQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQ 365 Query: 334 ECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH-- 390 + + +L A K +E+ + S+ D ++Q++ NL+SNA+KFT G V Sbjct: 366 DTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARA 425 Query: 391 -VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + ISI+D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 426 MLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLV 485 Query: 450 ANHGGQFLIRSKLREGVEVIA--ILPNTR 476 GG+ + S EG E LP TR Sbjct: 486 EQMGGEIGVDSTPGEGSEFWISLRLPKTR 514 >gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 542 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 11/281 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + H+ + N D + E + A + +++AE + AKS FLA+MSH Sbjct: 123 IVPVYSAHVMQKNPDGSKYMYCIDVDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSH 182 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN +LG ++++ E EYI + L L+++ILDLSR+EAG+ Sbjct: 183 EIRTPLNGVLGMLQLLKS----APEKEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGK 238 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLS 377 + + L+++++ + + AQ+K +++ + P+ ++ + D ++QV+ N++S Sbjct: 239 LAVDPAPFDLLELMQNLTDLYRPSAQQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIIS 298 Query: 378 NAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT G + V S+ D GPGI + ++ + + F Q S + Sbjct: 299 NAIKFTND-GIIKVETYPLPHTTAGTTKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQ 357 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 QG GLGL I + ++ GG I S+L G V +P Sbjct: 358 RTHQGAGLGLSICKQLVELMGGNISIESELGIGTTVYLCIP 398 >gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 954 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 93/259 (35%), Positives = 139/259 (53%), Gaps = 11/259 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E ++ + +T + K FLA+MSHELRTPLN ILG SE ++ +G L N Sbjct: 547 ISERKLMEIKLQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTL-N 605 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I I +SG+HLL LI++ILDLS+IEAG+ EL + +S+ ++ + ++ A Sbjct: 606 PNQHHAIAMIEKSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAF 665 Query: 345 EKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398 K I I I L + D + +RQV++NLLSNAVKFT G++++ VG Sbjct: 666 TKQINIESNIPQQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLA 725 Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + Y S+ DNG GIA ++ + F Q ++ G GLGL + + I+ HGG Sbjct: 726 ISTPQSIYFSVVDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGG 785 Query: 455 QFLIRSKLREGVEVIAILP 473 + S+L +G LP Sbjct: 786 CVEVSSQLGKGSCFTVYLP 804 >gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 718 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 9/241 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++ + R +AE N AKS FLA+MSHE+RTP+N I+G ++++ +G E + ++ Sbjct: 199 ENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSETGLG----EEQRLFV 254 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA R EL + + E + +LQ A++K+I + Sbjct: 255 DTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLLQPPARDKDIALL 314 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKD 407 D L + V D +RQ++ N++ NAVKFT G V ++V T G ++I+D Sbjct: 315 VDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPS-GHVLISVTGTHEDGVCDLRVTIQD 373 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI +I + F Q +G GLGL I + ++ GGQ + S+ EG Sbjct: 374 TGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQIWVTSENGEGTC 433 Query: 468 V 468 Sbjct: 434 F 434 >gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 418 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 90/263 (34%), Positives = 141/263 (53%), Gaps = 2/263 (0%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + L EL+ ++ E ++ N K FL+SMSHELRTPLNAILG+S Sbjct: 144 LARIRHHLQHKRLDDELKRSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYS 203 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ MG L N EY +I+ SG +LL +IN++LDLS+IEAG+ EL + + Sbjct: 204 EVLLDGMMGEL-NPKQLEYCKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEIL 262 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 V I +++ +A I + I + D ++Q+++NLLSNA+KFT G +V + Sbjct: 263 VNSVIGIIKEKASRHGIILLTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGL 322 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMA 450 V + I + D G G++E ++ + F Q +IK +G GLGL + ++ Sbjct: 323 KVSLHDDQELLIQVFDQGCGVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVL 382 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 HGG ++S+L +G LP Sbjct: 383 LHGGSIDVKSELGQGSSFFIRLP 405 >gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 1001 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 11/250 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ AE + AK+ FL MSHELRTP+N I+G E+++ + +E + Y Sbjct: 749 EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTEL----DEDQRNYT 804 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + S LL+++NEILD S+IE G L+ I + ++ + + +A+EK + + Sbjct: 805 DILMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKGLLLS 864 Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405 I+ ++ V D +RQV++NL+SNA+KFT G + ++V T + Sbjct: 865 CSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNE-GSISMSVEGLHRTGTQEFTLAFQV 923 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI + + SF Q ++ G GLGL I++ ++ GG + S+ + G Sbjct: 924 KDTGIGIPAEQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESREQLG 983 Query: 466 VEVIAILPNT 475 +P Sbjct: 984 SSFYFTIPTR 993 >gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b] Length = 909 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 179 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 238 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 239 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 298 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN+ILD Sbjct: 299 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 354 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 355 FSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 414 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 415 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 474 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 529 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 530 IEKNQTHRFA 539 >gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 919 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L+ D Sbjct: 625 TRFSVDLPLSPALDAGEADE 644 >gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 806 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 9/368 (2%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L P T + ++ + + + A N ++ + + V+ + ++ V Sbjct: 272 LWVPMFLTEDGFPLWVGRVVDPS-PLDAFRNELIVRVLTIIAVLVLAVMGLARWIAARVE 330 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-KRAEE 244 + + + L E+ +A + + E Sbjct: 331 HFGHELLGGIQRILRDGQPLRFSWTGPRELRELGERLTELAATHAEHLYAARAHTRELER 390 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS+FLA++SHELRTPLN+IL S+++ G + T + IH +G+ L L Sbjct: 391 SNRYKSQFLANVSHELRTPLNSILLLSKML--GAEGNGLSPTQRRQAQVIHEAGRDLRAL 448 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 I+ ILD+SRIE+GR L+ + L ++ + I + + +K +E+ +++P + Sbjct: 449 IDNILDISRIESGRLGLNPEPVDLRPMLEDLIELFSPQLADKPVELSLRLEPDAPEHIRT 508 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQYISIKDNGPGIAEGEIPTVL 421 D +RQ++ N L+NA+KFT G V + VG S R +S+ D G GI + + Sbjct: 509 DRDKLRQILKNFLANAIKFT-ECGEVRIEVGGCAESERPLILSVIDTGIGIPPDKQEIIF 567 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q + + G GLGL I++ + GG+ + S G +LP + Sbjct: 568 EAFQQADGSTRRRYGGTGLGLAISRELATLLGGRIEVESTPGIGSRFSLLLPLSP-EGVA 626 Query: 482 PEDNHEST 489 PE ES Sbjct: 627 PETRPESA 634 >gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 920 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 8/250 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L + A++ N AKS FLA+MSHE+RTP+NAI+G S + + N Sbjct: 137 QMLRNQARELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIGMSHLALKTDL----NA 192 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++Y+G IH S LL +IN+ILD S+IEAG+ + A L D++ ++ ++ +E Sbjct: 193 KQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNVANLVSMKVEE 252 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY- 402 K +EI ++D + + D + Q+++NL++NAVKFT G V +T Sbjct: 253 KGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAITAELDCESHVVV 312 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D+G G+ + +I + +F Q + G GLGL I + ++ G + S+ Sbjct: 313 QFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGMMDGDIWVESQ 372 Query: 462 LREGVEVIAI 471 G + Sbjct: 373 PGRGSQFTFT 382 >gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 456 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F+A++SHELRTPL +I GF E + + N E +++ I + Sbjct: 222 RRLE---KIRNEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + L + + + + ++ A+ KNI + + ++ Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGL 336 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++ Q+++NL+ N +K+T GG V V+ G I +KDNG GI++ IP Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVKDNGIGISKENIPR 395 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ +G + I Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFIMKF 448 >gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas ingrahamii 37] gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing ATPase domain [Psychromonas ingrahamii 37] Length = 1121 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 9/351 (2%) Query: 149 LSISALSNFMLPYAVFLSF--FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 L+++ +F+ +FL + P+ Q S V L ++ +S+ + Sbjct: 568 LALTFTLSFLSAGILFLIYQQVPLDDPRVKQVFASTLVKIFFLLLIIIGVVSWLFILVRS 627 Query: 207 LFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ +K L Q + E S ++ AE N AKSR+LA +SHELRTPLN Sbjct: 628 GNQTALKELRSQTNALAKESNAHEQTSSALQVAKEVAEAANEAKSRYLAGLSHELRTPLN 687 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +LG+++++ + P +E IG + R+G+HL +LI +L++S+IEAGR L Sbjct: 688 VLLGYAQLLSRDPALPF---KQREIIGIVKRNGEHLADLIEGLLEISKIEAGRVNLQRDE 744 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 +L I+++ + M Q++A +K ++ + P+L V D++ +RQ+++NL+SNA+K+T Sbjct: 745 FNLKAILQQLVDMFQMQASKKRLKFYYLASPNLPDYVATDKQRLRQILINLISNAIKYTE 804 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V V + S + S+ D GPGI++ + F Q A G GLGL I Sbjct: 805 Q-GSVTFKVTYRSE-VAHFSVIDTGPGISKSNQELIFKPFEQIRNDHTKAISGTGLGLTI 862 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 ++S+ GG+ + S + +G L ++ E Q Y+ Sbjct: 863 SRSLAELMGGEISLTSSIGQGSTFNFRLMLFKLHKDPKEPEFNKLQATGYS 913 >gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 674 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 11/265 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ + ++ ++ +E N AKS FLA+MSHE+RTPLN ILG +++E + Sbjct: 271 RDISQRKQLETQLRHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDL--- 327 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + + SG+ LL LIN+ILDLS+IE G L + L +++E + Sbjct: 328 -TEMQHWCVNILGNSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFS 386 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A K I + SL V D +RQV+LNLL NA+KFT G V ++ + Sbjct: 387 ALAKGITLRGHFSESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQ-GFVELSAQTMAEDEI 445 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+ D+GPGIA+ + F Q + G GLGL I++ ++ GQ + S+ Sbjct: 446 CFSVFDSGPGIAKERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESR 505 Query: 462 LREGVEVIAIL-----PNTRVLNFI 481 L +G L P R+ Sbjct: 506 LGKGSRFYFSLNLPQAPTERIPPPS 530 >gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 874 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 134/293 (45%), Gaps = 12/293 (4%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 I + + + ++E + E +++AE N+AKSRFLA MS Sbjct: 326 GALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEAKEQAEAANMAKSRFLAVMS 385 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N ILG ++ + + +E++ S + +L L+N+ILD S+IEAG Sbjct: 386 HEVRTPMNGILGMLGLLNDRRL----DGQQQEWLATAQESAESMLTLLNDILDFSKIEAG 441 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 EL +SA S I++ + RA K I + + +L V D +RQV++NL+ Sbjct: 442 HLELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWVQGDPGRLRQVLMNLV 501 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 SN +KFT GG V + V + R ++D+G GI ++ + F Q + Sbjct: 502 SNGIKFTHQGG-VTMRVAQQAKREDSLLLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYS 560 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + ++ GG+ + S G P+D Sbjct: 561 RKYGGSGLGLAICRHLVDLMGGEIRLESPPSGGSRFTFT--ARFGYAHAPQDE 611 >gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] Length = 2241 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 12/293 (4%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 ++ A L + S L + + + E + AEE Sbjct: 1456 NLVPAAFTTDRLQALNILAGQAAISIENALVYETLEKRVTDRTEELNV----AKVLAEEA 1511 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G S + + K+++ I S + LL +I Sbjct: 1512 NRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPLNL----DQKDFMDKILESAEGLLGII 1567 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEA + L ++ L ++ + + L+A+EK +E+ ID + ++ D Sbjct: 1568 NDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALELHVDIDSDVPALLLGD 1627 Query: 365 EKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVL 421 ++Q++ NL+SNA+KFT G + V++ T + D+G G+ + + Sbjct: 1628 PLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQVRFDVTDSGVGLTQEHQRELF 1687 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGL I + ++ GQ +RS L +G +P Sbjct: 1688 KPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRSHLGKGSTFGFRIPV 1740 >gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 774 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 18/297 (6%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + I+ L + + ++E + ++ AE + +KS FLA MSHE Sbjct: 189 YVRISVSLLRDANGDPQFFVAHIEDVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHE 248 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NA+LG +E++E + KE++ I SG+ LL +IN+ILD S++E+G Sbjct: 249 IRTPMNALLGMAELLESTALTV----QQKEFVSIIRSSGKTLLTIINDILDFSKVESGNL 304 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW-ADEKGMRQVILNLLS 377 L E + L + + + +I+ +A EK++ + ++P ++ +V+ D MRQ++ NL+S Sbjct: 305 VLEEGYLDLYECIEDVLILFSNQADEKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLIS 364 Query: 378 NAVKFTAIGG-RVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 N++KFT G +HVT+ ++KD G GI + ++ + F Q Sbjct: 365 NSIKFTKKGEISIHVTISPIEAEALSEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQV 424 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482 ++ G GLGL I + ++ GGQ + S+L LP P Sbjct: 425 DSSVTRKHGGTGLGLSICKRLVELMGGQMWVESELGCSSTFHFSIQLPAYENACQTP 481 >gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] Length = 918 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGHERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L+ D Sbjct: 625 TRFSVDLPLSPALDAGEADE 644 >gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] Length = 918 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGHERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L+ D Sbjct: 625 TRFSVDLPLSPALDAGEADE 644 >gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] Length = 924 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 17/360 (4%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGM 192 + ++++L +A+ L +V+A L + ++ Sbjct: 172 RALLISGIVIILSLVFAAILALRLSRMFMTPLNKLVLATDKLVEGKRSTGLNDNMIGEFE 231 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + K ++ QA D + + + E + +K A++ N KS Sbjct: 232 LLREGLNTIAHTMVMQKDEMQKNIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKS 291 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHELRTPLN ++GF+ + + K+Y+ I S L+ +I++ILD Sbjct: 292 DFLAKMSHELRTPLNGVIGFTRQLYKTPLNKH----QKDYLDTIMLSANSLMTIISDILD 347 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 S++EAG EL L D V E + +L A +K +E+ I+ + + D + Sbjct: 348 FSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFK 407 Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQ 426 QV++NLLSNA+KFT G +V ++ +S+ D G GI + ++ T FGQ Sbjct: 408 QVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGVGIPMDKQDSLFTPFGQ 467 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI----AILPNTRVLNFIP 482 +I G GLGL I + I+ G+ + S G LPN N +P Sbjct: 468 ADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGNGTCFTFNSVFSLPNHVFTNDLP 527 >gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] Length = 926 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 9/267 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + +L + AE ++ AKS FL+ MSHE+RTP+NAI+G +++ E P Sbjct: 532 MSVRSRMRNALLQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDLTCKERDVP-- 589 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ + I S Q+LL LIN+ILD+SRIE G+ E+ + SL +++E M+ +A Sbjct: 590 -PEIEKKLKKIRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQA 648 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 ++K +E S + D +RQV++NLLSNAVKFT GG+V + V S + Sbjct: 649 EQKGLEFQVDFYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEME 708 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S++D G GI + + +SF Q +I + G GLGLPI+++I GG ++S Sbjct: 709 YRFSVQDTGVGIPYEDQERIFSSFEQLRPSISHSA-GTGLGLPISRNIARLMGGDLEVKS 767 Query: 461 KLREGVEV--IAILPNTRVLNFIPEDN 485 + +G E P + PE Sbjct: 768 EPGKGSEFYMTLRFPKGANVPPSPEPA 794 >gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 614 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 98/268 (36%), Positives = 154/268 (57%), Gaps = 1/268 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + D AE + AK+RFLA+MSHELRTPLNAI+GFSE++ E L Sbjct: 324 RDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGFSEMMVQEDALSL 383 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + KEY I+ SGQHLL+++N ILD+S++E+G +E+ + +++ +L L+ Sbjct: 384 DAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPREVLLNSSNLLALK 443 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A++ IE+ ++ L + D + RQ++LNL+SNAVKFT GGRV ++ G Sbjct: 444 ARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVTISA-RVEGSRMV 502 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + DNG GIA+ ++ + F Q + +G GLGL I +S++A H G+ ++SK+ Sbjct: 503 LRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVALHRGEIDVQSKV 562 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490 EG V +LP T V + ++ Sbjct: 563 EEGTTVTVMLPLTFVPGVDVSEAEPASD 590 >gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 595 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 130/240 (54%), Gaps = 7/240 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+A++SHEL+TP+ ++ GF+E + M + T +E++ I+ Sbjct: 360 RRLE---QIRSEFVANVSHELKTPVTSVKGFAETLLDGAM--YDEATLREFLKIIYDESD 414 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LI++ILDLSRIE R L ++++D+V E + ++ R ++K +E+ Sbjct: 415 RLHRLISDILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKRIEKKQLELVL-PQKRHV 473 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + AD+ +RQ++LNL++NA+ +T GR+ +++ I + D G GI+E ++P Sbjct: 474 MMEADKDRLRQILLNLVTNAIAYTPDKGRIEISLIERENELDLI-VSDTGIGISEKDLPR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A G GLGL I + ++ ++ G+ + S+ +G I LP T+ Sbjct: 533 IFERFYRVDKARSRQSGGTGLGLAIVKHLVESYHGKIRVESEEGKGSTFIVTLPRTQTRP 592 >gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 716 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 9/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + I +L+ + ET+ +AE N AKS FLA+MSH Sbjct: 214 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 273 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNA+LG++++++ + EY+ I+RSG+HLL+LIN++LD+S+I+AG Sbjct: 274 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLDIINRSGEHLLSLINDVLDMSKIDAGH 330 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 + + ++ E ++Q++A +K + + +++ S+ V D RQV++NLL Sbjct: 331 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 390 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G + + D G GI+E V F Q I Sbjct: 391 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDTGIGISEENQERVFQPFEQLDSDITQN 450 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ + GGQ +++S+L G L Sbjct: 451 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 486 >gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1786 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I R+ Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL++IN+ILD S+IEAG+ ++ L ++ + M +A K IE+ + P+ Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV++NL++NA+KFT G V +++ + S++D+G G+ Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I + ++ GG+ + S+ G Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265 >gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776] gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776] Length = 1322 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 12/244 (4%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA MSHE+RTPLN ++G ++++ ++ ++ K Y+ S LL LIN+IL Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSL----DDRQKRYVTICRSSADTLLGLINDIL 666 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 DLS+IEAGR EL+ L +V + M RA+ K +E+ I P + + D + + Sbjct: 667 DLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERL 726 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 RQ+++NL+ NA+KFT++ G V + V T I +KD G GI+ + + F Sbjct: 727 RQILVNLVGNALKFTSV-GYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQQQKLFQPF 785 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIP 482 Q + G GLGL I + + G I S + G LP V P Sbjct: 786 TQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPLTSAEVSKVAP 845 Query: 483 EDNH 486 E Sbjct: 846 EHEP 849 >gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 844 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 24/307 (7%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ Y + + + QA ++ +E + ++ EE LAKS FLA+ Sbjct: 135 LIARLRYHSKAFLGQLQRDEAYQALRESQKQLVEK-NASLVALNQKLEEATLAKSEFLAN 193 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N ++G + ++ + + +EY+ S +L +IN+ILD S+IE Sbjct: 194 MSHEVRTPMNGVIGMTALLLDTEL----TDEQREYVEATRSSADAMLTIINDILDFSKIE 249 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374 +G+ +L L + E + +L +A EK++++ +D ++ + D +RQ+++N Sbjct: 250 SGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVN 309 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR-----------------GQYISIKDNGPGIAEGEI 417 L+ NAVKFT G V + V S++D G GI + Sbjct: 310 LIGNAVKFTNE-GEVFIQVKPAPKHFNDRDRSASSITGPDMWMLQFSVRDTGVGIPIDKQ 368 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + SF Q + G GLGL I + + GG + S +G + Sbjct: 369 HRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFHFTIQARAT 428 Query: 478 LNFIPED 484 + IP Sbjct: 429 ASVIPPA 435 >gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] Length = 361 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298 +R E +S F+A++SHELRTPL +I GF E + G ++N ++ ++ I Sbjct: 127 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 180 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L LIN+IL LS IE + + I L + + + + ++ A+ KNI + + ++ + Sbjct: 181 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 240 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + ++ Q+++NL+ N +K+T GG V V+ G I+++DNG GI++ IP Sbjct: 241 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIITVEDNGIGISKENIP 299 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ G + I Sbjct: 300 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 353 >gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 635 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE++ + Sbjct: 256 HDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIM----VLTE 311 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E EY+ I ++ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 312 NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLK 371 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+++ D + QV+ N LSNA+K T G + + + G Sbjct: 372 -MKLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTET-GSITLGLKQ-EGDWLK 428 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI E ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 429 LFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVSSEL 484 Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489 +G LP IP + E + Sbjct: 485 GQGSTFALYLP----YQEIPVEVAERS 507 >gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 774 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 109/271 (40%), Positives = 163/271 (60%), Gaps = 3/271 (1%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + L+ +AE++ +E+ + ET +RAE N AKS FLA+MSHELRTPL Sbjct: 500 RLMATIHDLSLARRAEQERGQELVELNRKYMRET-ERAESANRAKSEFLANMSHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+++ GPL +E Y+EY+ DI+ SG +LL +IN+ILD+S+IEAG++ + Sbjct: 559 NAIIGFSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRE 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +I L +++RE + ++ L+A +KNIE+ + SL S+ AD + ++Q+++NLL NAVKFT Sbjct: 619 SIDLSEVIRETMRVVTLQAGKKNIELTSDVPASL-SLHADRRAVKQILINLLFNAVKFTG 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGRV + ++IKD G GI + + F Q + G GLGL I Sbjct: 678 QGGRVTLRARVV-SNSLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++S+ HGG IRS G V LP Sbjct: 737 SRSLTELHGGALRIRSTEGVGTIVSIRLPVQ 767 >gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 595 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 7/335 (2%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 +++ + F + ++ P L + +I F Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERFLQAWYFEQGNDAEIIAPLPPQVNELFIRV 317 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE--ENLAKSRFLASMSH 258 + +S L + + + R EE + + F+A++SH Sbjct: 318 VREEKEQSIELSLQGRTWVILMTPLYDKTNVRGAVAVLRDMTEERRLDKLRKDFIANVSH 377 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTP+ + G+SE I + +E KE I+ + L+N++LDL+R+EAG Sbjct: 378 ELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGH 435 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L+ + L + I Q A+EK I++ + D + D + QV+ NL+ N Sbjct: 436 ITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIRIRMDPDRIEQVLTNLIDN 495 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A++ T G V + + +G G I ++D+G GI E ++P V F + A G Sbjct: 496 AIRHTDQNGTVKI-IAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFYKADKARTRGRSGT 554 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL IA++I+ H G + SKL EG LP Sbjct: 555 GLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589 >gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] Length = 1272 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +AE AKS FLA+MSHE+RTP+NA++G + + + P Sbjct: 486 ITHRKKMEEELIVARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTP--- 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ I S LL +IN+ILD S+IEAG+ + +L +++ M+ ++ + Sbjct: 543 -KQRDYLHKIQISANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLR 601 Query: 345 EK-NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 EK IE+ + + D + Q+++NL +N++KFT G + V+ S Sbjct: 602 EKEGIEVLFDTGADVPRQLVGDPLRLSQILVNLANNSIKFT-ESGEIVVSTKVVSQGNHV 660 Query: 403 I----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I S++D G G+ E + + T+F Q +I G GLGL I Q ++ GG+ + Sbjct: 661 IVLQFSVRDTGIGLTEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWV 720 Query: 459 RSKLREGVEVIAI 471 S +G Sbjct: 721 ESIYGKGSTFYFT 733 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ ++ E R AE+ K FLA+MSHE+RTPLNA+LGFSE++E + + Sbjct: 335 ISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTNL----D 390 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E++ I +G++LL ++N+ILD+S+IEAG +L S+ + M Q A Sbjct: 391 ADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAAT 450 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 +K +++ ++DP+L +V D + Q++LNL++NA+KFT G V + + + Sbjct: 451 DKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQ-GSVTLLIEQGERKTSAS 509 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G G+A +PT+ F Q G GLGL I +S+ G + Sbjct: 510 IPVRFIVQDTGIGMAREALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQKGSVSV 569 Query: 459 RSKLREGVEVIAILP 473 S L +G +P Sbjct: 570 ESTLGKGSRFTVEIP 584 >gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] Length = 909 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 179 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 238 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 239 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 298 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN+ILD Sbjct: 299 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 354 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 355 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 414 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 415 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 474 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 529 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 530 IEKNQTHRFA 539 >gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1234 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ P Sbjct: 698 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S LL +IN+ILD S+IEAG+ EL A L ++ + + L+AQ Sbjct: 755 -QQKDYLEKAGFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQ 813 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ + + D + QV++NLLSNAVKFT G + + R I Sbjct: 814 EKGVELLLYAPVTAGLILEGDPLRLGQVLINLLSNAVKFT-QSGEIELGCEDVGERDHRI 872 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + I+D G GI++ + T+ +F Q + G GLGL I++ +++ GG + Sbjct: 873 TLKFWIRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVE 932 Query: 460 SKLREGVEVIAIL 472 S++ G + Sbjct: 933 SEMSVGSTFSFTI 945 >gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3] Length = 1287 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933 >gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 795 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 112/284 (39%), Positives = 162/284 (57%), Gaps = 7/284 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + S QAE AEL +RAE + AKS FLA+MSHELRTPL Sbjct: 503 KRLMATIGDLTSSQAELKRKAAELSELNMDYQVETERAEAASRAKSEFLANMSHELRTPL 562 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSEV++ GPL ++ Y EY DIH SG HLL +IN+ILD+++IEAG+ +L Sbjct: 563 NAIIGFSEVLQARMFGPLGSDKYGEYADDIHNSGIHLLTVINDILDMAKIEAGQMQLERE 622 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L +++E + ++ ++A++K+I + Q+I L S+ AD + M+Q++LNLLSNAVKFT Sbjct: 623 DVDLAPLLKETLRLVAIQAEQKDIRVDQRISAKL-SLNADRRAMKQILLNLLSNAVKFTE 681 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG++ V T ++I+D G GI + + + F Q + G GLGL I Sbjct: 682 PGGKILVRARKT-SCAVTLTIEDTGIGIPKALLNRIGQPFEQVQNQFSKSTGGSGLGLAI 740 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 ++S+ HGG +RS G V +P PED S Sbjct: 741 SRSLAELHGGAMKVRSIEGMGTIVSVRVPI-----NCPEDQPSS 779 >gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 498 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 11/276 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + ++ E R AE N K FLA++SHELRTPLNAILG++ + Sbjct: 226 AIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGL 285 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + P + + + I R+ + LI+++LD+SRI G L+ + L I+ Sbjct: 286 LRRKQLSP---DKVQRALEVIERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIIN 342 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 I LQ A K+I+I ++PS + + D ++Q++ NLLSNA+KFT G+V + + Sbjct: 343 AAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVKIYL 402 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 W I ++D G G++ P + F Q +I + G+GLGL I + ++ HG Sbjct: 403 EWLE-NAVQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSHGGLGLGLAIVRHLVELHG 461 Query: 454 GQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHES 488 G S +G I LP P+ + ES Sbjct: 462 GTVWCESDGDGKGATFIVELPLK------PQADAES 491 >gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1014 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 134/259 (51%), Gaps = 12/259 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 630 ITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST----DEE 685 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ I + LL LI++ILDLS+IEAG E S + L +++E LQL+ + Sbjct: 686 EEKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIK 745 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ V ++ + Q+I+NL++NA+KFT G + G+ G+ Y Sbjct: 746 SEAVKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGS---IRFGYELRGKELYF 802 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA+ E ++ F + S QG GLGL I Q+++ + GG + S+ Sbjct: 803 YVADTGCGIAKDEQESIFGRFVKL----NSFAQGTGLGLSICQTLVNHMGGHIGVESEKG 858 Query: 464 EGVEVIAILPNTRVLNFIP 482 +G LP P Sbjct: 859 KGSTFWFTLPYEAASTAEP 877 >gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146] gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella ictaluri 93-146] Length = 918 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 25/360 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LLI++ I+ L ++ L V P+ ++T + LD + G L Sbjct: 172 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + M + T +Y+ I RS +LL +IN Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVMKTPLSATQIDYLHTIERSANNLLTIIN 341 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EAG+ L L + + E +L A +K +E+ + + V D Sbjct: 342 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHVLGDP 401 Query: 366 KGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ++QV+ NLL NA+KFT G R+ + + I + D G GI+E + + Sbjct: 402 MRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDTGIGISERQQSQLFQ 461 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q +I G GLGL I Q ++ GG S+ +G + N P Sbjct: 462 AFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAPP 521 >gi|119486633|ref|ZP_01620683.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456250|gb|EAW37382.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 536 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 152/338 (44%), Gaps = 26/338 (7%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 + +F +V+A+ +++ + + S F + L+ Sbjct: 199 FFSLLISAFLGLVLAVYISWVIAYPIATMIKVANQVGEESDFAIQIPVTTDDEIGELTYA 258 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + LI + ++ + AE N +KS FLA+MSHELRTPLNAI+G+SE++ E Sbjct: 259 --LNHLIQRVAEYTEELEKAKVLAESANRSKSVFLANMSHELRTPLNAIIGYSEMLHDEA 316 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI-DIVRECII 337 ++ + + I +G+HL ++I++ILD+S+IEAG L S+ ++++ I Sbjct: 317 DDLGCHDFLPD-LEKIQTAGRHLRDMISDILDISKIEAGHVTLYLEDFSVEKQLLKDVIT 375 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A++ + +I + ++AD +RQ++LNLLSNA KFT G + + V Sbjct: 376 TTKPLAEKNRNTVKIEIKNEIGQMYADLPKVRQILLNLLSNACKFT-QDGVITIVVKRVK 434 Query: 398 G---------------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 + + D G G+++ + + +F Q + Sbjct: 435 SKPSSTRRTLSSGSRFGGNQMQQYLIFKVIDTGIGMSDEQQKLIFKAFTQADASTTKRFG 494 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+Q + GG + S+ +G I LP Sbjct: 495 GTGLGLAISQRLCEILGGGITVESQEGKGSTFIVWLPV 532 >gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 894 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 13/269 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T + Sbjct: 488 ITEMERMKRELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y + + + LL LINEILDLS+IEAG E + + + L + +E R Sbjct: 544 DERLNYYEIVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + +E+ + + D+ + QV+ NL+ NA KFT G++ G Sbjct: 604 Q-GVELIYESSDEGIVIDGDKNRLFQVVSNLIGNAFKFT-TNGKISYGYHR-EGDYVVFH 660 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIA ++ + F + + QG GLGL I ++I+ GG + S++ + Sbjct: 661 VNDTGSGIAADKLDRIFERFVKV----NTFAQGTGLGLSICKTIIERMGGNISVSSEIGK 716 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G ILP + E ++ + Sbjct: 717 GTTFTFILPL--TAPQKEGEVQEDSEERV 743 >gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1297 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 5/256 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E A R E N K FLA +SHELR+PLN ILG++++++ + L Sbjct: 898 IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL-- 955 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+ + LI+++LD+SRI G+ L+ + L+ + + ++L A+ Sbjct: 956 -KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAE 1014 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K+I I + S+ V D ++QV+ NLLSNAVKFT GG + V + G +I Sbjct: 1015 SKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERV-GSLAHIQ 1073 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 ++D G GI+ +P V F Q G+GLGL I + ++ HGG + S Sbjct: 1074 VRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGEG 1133 Query: 464 EGVEVIAILPNTRVLN 479 G LP V Sbjct: 1134 LGTTFTVKLPLVAVSQ 1149 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 11/272 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + E ++ AE+ N AKS FLA+MSHELRTP+NAILG ++ + + N Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + Q LL L+N+ILD S++EAG+ E+ + SL +++ E I+L Q Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K++EI +ID + + + D +RQ++LNL NA+KFT G V V++ S G Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEA-GEVKVSIQTESHDGDRC 683 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D G G+ E + V F Q +I G GLGL I + ++ G ++ Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743 Query: 460 SKLREGVEVIAILPNTRVLNF-IPEDNHESTQ 490 SK G E + V PE + E Sbjct: 744 SKQGVGSEFSFTVNLGCVDEERQPEPSAELPD 775 >gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 962 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 8/247 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHELRTPL ++LGF+E++ + + P E + YI I++ L Sbjct: 583 EIDQMKSEFVSTVSHELRTPLASVLGFAELLLTKKLKP---ERQQRYIATIYQEATRLTA 639 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LDL R+E+GR +++ ++R+ + ++++ E+ + + ++ V Sbjct: 640 LINDFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTV--VSG 697 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+ + QV LNL+SNAVK++ GG V V G + ++D G GI IP + T Sbjct: 698 DQAKLHQVFLNLISNAVKYSPHGGHVRVGC-RQDGNRLLVEVQDEGLGIPSEAIPHLFTK 756 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR--VLNFI 481 F + + + G GLGL I Q I+ H G+ + S+ +G LP + Sbjct: 757 FYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLPLAEHDLSPGY 816 Query: 482 PEDNHES 488 P + E+ Sbjct: 817 PAGSEEA 823 >gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 786 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ A+ E ++ AE + KS FLA+MSHELRTPLNAI+G+SE++ + N Sbjct: 248 ISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDAADDGNT 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I +G+HLL LIN+ILDLS+IEAGR ++ + L +V E ++ Q Sbjct: 308 AMVAD-LDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTIVGPMMQ 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRG 400 + ++ + + ++ D ++Q ++NLLSNA KFT G V + + + Sbjct: 367 KNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKE-GTVTLRISRDAMPDGSSA 425 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D+G G+ E ++ + +F Q + G GLGL I + +A GG + S Sbjct: 426 IRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGGTIAVAS 485 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487 + G LP +P + E Sbjct: 486 EAGRGSTFTIELPVD--AKGLPAEAGE 510 >gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040] gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040] Length = 761 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 11/249 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R+RAE N AKS FLA+MSHE+RTP+N ++G +E++ T+ E + Y Sbjct: 199 EEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTTL----TEEQRLYA 254 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA + L A L + E +++LQ A++K + + Sbjct: 255 NTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVMLLQANARDKGLTLL 314 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405 D + + D +RQ++ NL+ NA+KFT G V V +ISI Sbjct: 315 VDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNE-GHVTARVTGVPHPEDNTVMLHISI 373 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D+G GI + +I + F Q +G GLGL I + ++ G+ + S+L +G Sbjct: 374 EDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDGEIWVESQLGKG 433 Query: 466 VEVIAILPN 474 LP Sbjct: 434 SCFGFRLPL 442 >gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188] Length = 1287 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933 >gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] Length = 936 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 687 ITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEELS--- 743 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI + + LL LI++ILDLS+IEAG +E + + + + + + + ++A+ Sbjct: 744 -ERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKAK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 +E+ + V +D + QVI N ++NA+KFT+ G + VG+ Sbjct: 803 G-EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS---IHVGYKLKDGELEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG+ + S+ Sbjct: 859 YVEDTGIGIEKEQLPHIFERFVKL----NSFVHGTGLGLSICQSIVEQLGGRIGVDSEKG 914 Query: 464 EGVEVIAILPNTRVLNFI 481 +G +P V + Sbjct: 915 KGSRFWFTIPGVIVTEEV 932 >gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 578 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 148/334 (44%), Gaps = 33/334 (9%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L Q + D+ + + K + E ++A Sbjct: 90 TAVQALRLGAQDYLFKPFDDLEMVIATVNKALERRRLVEERDKLVRTLTDLAIENGRILA 149 Query: 227 ELEVAKSLSDE--TRKRAE--EENLA---------------------KSRFLASMSHELR 261 E S +E ++ AE + NL KS+FLA+MSHE+R Sbjct: 150 ECRRVNSSLEEKVAQRTAELSKSNLQQKAIIAELHEAKEAAEAANRAKSQFLANMSHEIR 209 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N +LG +E++ + +E K Y+ +H+SG+ LL +IN+IL++S+IEAGR E+ Sbjct: 210 TPMNGVLGMAELLLHSEL----DEKQKSYVKILHQSGESLLGIINDILNISKIEAGRLEI 265 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L + R + + + + K + + +I+ + V D +RQV++N+++N + Sbjct: 266 ERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRLRQVLINVVNNGL 325 Query: 381 KFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G RV + + +G+ +KD G GI I + F Q + G Sbjct: 326 KFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFAQVDGSTTRKYGG 385 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL IA+ ++ GG + S+ +G I Sbjct: 386 TGLGLAIAKQLVELMGGAIGVESEPGQGSTFTFI 419 >gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942] gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 754 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 4/235 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K FLA+MSHELRTPL ++G S + GPL E +EYI IH SG+HLL LIN+I Sbjct: 384 KGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLT-ERQREYIKAIHDSGEHLLELINDI 442 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSSVWADEK 366 LDLS+IEAG+ L SL + + + LQ +A+ E + + +++ + AD K Sbjct: 443 LDLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPK 502 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQ+++NLLSNAVKFT G V + V W G + D G GI E E + F Q Sbjct: 503 RLRQILINLLSNAVKFTEPQGTVFLRV-WREGDRAIFQVSDTGIGIPESEQAQLFQKFQQ 561 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +I+ G GLGL + + ++ HGG I S + +G +P ++ + Sbjct: 562 LDTSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIPEQTLIEPV 616 >gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 932 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 8/278 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 355 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L + + E I + A EK +EI K+DP + + D ++Q++ NL+ Sbjct: 356 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 415 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 N++KFT G V V + SG + ++D G GI+E + + +F Q +I Sbjct: 416 GNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 475 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I Q +++ GG+ + S+L +G Sbjct: 476 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I+ + + ++ LE + ++ R A E K F A++SHE+RTPLN ++G E Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILE 296 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ + N +EY+ SG+ LL LI ILD SRIE+G+++L L +I+ Sbjct: 297 LLKNMGL----NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEIL 352 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + I +L +AQ K +E+ + ++ S+ D +RQ+++NL++NAVKFT G V + Sbjct: 353 DDVIGLLAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDR-GEVSI 411 Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + ++D G GI V +F Q + G GLGL I + Sbjct: 412 EVSLLEKKAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 ++ GG + S +G P P++ Sbjct: 472 LVDLMGGDIGVESGSGKGSIFWFTAPLEE--TSAPQE 506 >gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM 15053] gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM 15053] Length = 870 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 12/269 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L + + L ++RAE N AKS FL+ MSHE+RTPLN I+G E+ Sbjct: 327 LRRSEKRSSELLRTEKERAETANRAKSDFLSQMSHEIRTPLNGIMGMVEL---GKHHIEE 383 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + + + I S HLL+LIN+ILD+S+IE+G+ EL L ++R + ++A Sbjct: 384 PDRMRNCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQA 443 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 + K I+ + L + D + Q++ NLLSNA+KFT G V + V Sbjct: 444 KNKQIDFQIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENG 503 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GIA + V +F Q + I G GLGLPI ++ + GG + Sbjct: 504 IWLRFEVRDTGRGIAPENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVTV 563 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S++ G LP + + PE+ E Sbjct: 564 SSEIGAGSVFTVDLPFS----YEPENESE 588 >gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS] Length = 1284 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 680 EMDELKRKINKMVSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 739 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 740 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 796 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 797 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 855 Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 856 TISKSTRELCQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 915 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 916 SKRLVNLMGGDVWVTSEFGHGSTFHFT 942 >gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 594 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 118/232 (50%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + F+A++SHEL+TPL +I+G+ + I ++ T K ++ I Sbjct: 362 ELRRLEQLRKEFVANVSHELKTPLTSIIGYIDTIIDN--DIKDDTTIKRFLSIIKDEADR 419 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI ++LDLS++EA R E+ L IV++ +MLQ +A+ K+I++ I L Sbjct: 420 LYLLIKDLLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPF 479 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V+ + + QV++NL+ N +K+T GGRV + + + ++DNG GI E + + Sbjct: 480 VYLIPEQIEQVLINLVDNGIKYTEPGGRVILRA-YEENNRVVVEVEDNGIGIPEEDQGRI 538 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A + G G+GL I + I+ NH + + S+ +G L Sbjct: 539 FERFYRVDKARSRSMGGTGIGLSIVKHIIKNHDSEIKVESEPGKGSLFRFYL 590 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE NL+KS FLA+MSH Sbjct: 672 WLLSRGRVVEYTVDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ + + ++Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAQRTELTA----KQEDYLDKAGFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL + A L ++ + + L++Q+K +E+ + + D + QV++N+LS Sbjct: 788 LELEKVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + ++ +F Q + Sbjct: 848 NAVKFTQT-GEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GGQ ++S++ G + Sbjct: 907 KYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945 >gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 1045 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 833 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP P + + Sbjct: 890 GSRFWFTLPFQPKKELFPSEEQK 912 >gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1564 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 132/278 (47%), Gaps = 32/278 (11%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + RK A+ N+AKS FLA+MSHE+RTP+NA++G + ++ T+ ++++ Sbjct: 1013 NTALKQARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDN----QQRDFV 1068 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG LL LIN+ILD S+IEAG+ E E SL + E + ++ RA +K +E+ Sbjct: 1069 ETIRSSGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELA 1128 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---------------- 394 DPS + D +RQ+++NLL+N VKFT G V + V Sbjct: 1129 YLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFTEQ-GEVVIYVQDITDTDITQPETTSQR 1187 Query: 395 ------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 R ++D+G GI + + SF Q + G GLGL I +S+ Sbjct: 1188 KNFTDIQNQRRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSL 1247 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG+ + SK G + + PE + Sbjct: 1248 SQMMGGRIWVESKAGVGSSFFFTI----AVPVAPEGEN 1281 >gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 919 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ +++ E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 671 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 726 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EYI + + LL LI++ILDLS+IEAG +E + + + + + Q++ Sbjct: 727 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 786 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + IE+ PS +V +D + QVI N ++NA+KFT+ G +HV Sbjct: 787 Q-GIELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 843 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI++ ++ + F + S G GLGL I +SI+ GG + S+ + Sbjct: 844 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 899 Query: 465 GVEVIAILP 473 G +P Sbjct: 900 GARFWFTIP 908 >gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris] gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str. Paris] Length = 910 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN+ILD Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 531 IEKNQTHRFA 540 >gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 910 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN+ILD Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINDILD 355 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 356 FSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRIK 415 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 531 IEKNQTHRFA 540 >gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703] gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703] Length = 1374 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 19/288 (6%) Query: 210 SNVKILSCQAEKDDL---------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 N+ + + + E+D L I A+ ++ +++A+E N AK+ FLA+MSHE+ Sbjct: 602 VNLVVTAMRDEQDQLLGYLGVATDITRQRQAQDALEKAKRQADEANEAKTMFLANMSHEI 661 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NA+LG +++ + P + H + LL L+N+ILD S+I+AG+ E Sbjct: 662 RTPMNAVLGMLQLLLRNNLTP----RQHAFASKAHIAATSLLGLLNDILDYSKIDAGKLE 717 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNA 379 L +++ IM + K+IE+ +DP L + DE ++QV++NLLSNA Sbjct: 718 LDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDLDPQLSPYMIGDELRLQQVLINLLSNA 777 Query: 380 VKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KFT G + TV + IS+ D+G GI+ + + F Q + Sbjct: 778 IKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGIGISPEQQTRIFGEFIQAEASTTRRYG 837 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IAILPNTRVLNFIP 482 G GLGL I + ++ G + S L +G P + ++P Sbjct: 838 GTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSLTLTFPRDTTVEWVP 885 >gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 580 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 7/261 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 DL A++E + A + N AKS+FLA++SHE+RTP+N ++G + ++ ++ Sbjct: 48 DLEAQVEERTAALKTAMSDAVKANEAKSQFLANISHEIRTPMNGVIGMATLLLDTSL--- 104 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ + Y I S LL +IN+ILDLS++EAGR ELS L D++ + +L Sbjct: 105 -SDNQRHYATTIRESSDALLTIINDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPA 163 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRG 400 A +++++ + L +SV D +RQ++LNL NA+KFT G V V V S Sbjct: 164 AISRSLDLVSFLPMELQTSVVGDAGRLRQILLNLAGNALKFTDK-GTVAVRVSEAKSSGK 222 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I+D G GI + ++PT+ F Q + G GLGL I + +++ GG+ ++S Sbjct: 223 VRFEIEDTGIGIPQDQLPTLFDKFVQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQS 282 Query: 461 KLREGVEVIAILPNTRVLNFI 481 + REG LP + + Sbjct: 283 EEREGSLFWFELPLLKDDQQL 303 >gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081] gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081] Length = 1287 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933 >gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 720 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + + +AEE N KS FLA++SHE+RTPLNAI+GFS ++ G + Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI I + LL LI+++LDLS+IEAG E + + + + E +LR + Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNK 588 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + I I + V AD + QV++NL++NAVKFT G + + Sbjct: 589 KSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + +F + S QG GLGL I ++I+ GG+ S+L + Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 465 GVEVIAILP 473 G LP Sbjct: 704 GSTFWFTLP 712 >gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 918 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L+ D Sbjct: 625 TRFSVDLPLSPALDAGEADE 644 >gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1927 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 136/254 (53%), Gaps = 14/254 (5%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + ++ + ++ A+ N AKS FLA+MSHE+RTP+NAILGF +++ Sbjct: 1417 EKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGFCDLLNHLVTDNRG---- 1472 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + Y+ I +G+ LL LIN+ILDLS+IEAG+ +L ++L +++E + +A+EK Sbjct: 1473 QFYLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTLIQEIYQIFSQKAEEKQ 1532 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG-- 400 I++ +ID S+ + + DE +RQ++ N++ NA+KFT G V +++ T + Sbjct: 1533 IKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEE-GYVKISLNSYHSETQDQEDS 1591 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I+I+D G GIA + + +F Q G GLGL I + + GG+ + Sbjct: 1592 ITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLAITKRLTTILGGKIEL 1651 Query: 459 RSKLREGVEVIAIL 472 S+ +G Sbjct: 1652 YSQPNQGSIFSFTF 1665 >gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 630 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 165/397 (41%), Gaps = 10/397 (2%) Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 +A +L + I L+ ++ G L L E L Y Sbjct: 94 CFAVARALLAACPPRPRDGLKREREAIVLVRPVLSGGERVGTLVLAASVPSIREVLGQYL 153 Query: 142 S-ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 A L++AL++ + +S + +A + I H D + + Sbjct: 154 GGAALIMALTLLVAGVLAMVLQARVSAPILAIARVAERITQTHQFDDR---VAVDSSDEL 210 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + +I AE + I E + ++RAE+ K++FLA+MSHE+ Sbjct: 211 GVLARSFNTMLEEIARSGAELEQQIMERNRVNAELLAAKERAEDAARQKTQFLANMSHEI 270 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N ++G ++ + + +E++ + Q L+ ++N+ILDLS+IEAG+ Sbjct: 271 RTPMNGVMGMISLVLDHELDSQD----REHLLMAQSAAQSLIIILNDILDLSKIEAGKMT 326 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L ++ + + + A K +++ + P V D +RQ+++NL+ NA Sbjct: 327 FETVDFDLHRLIGDAMGIFSSAAIAKGLDLGIDLAPDSPRWVRGDPVRLRQILINLVGNA 386 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFTA G V +T+ +++D G G+ + ++ + +F Q + G G Sbjct: 387 VKFTAA-GSVRLTLAPHLDNLVRFAVRDTGIGVPKDQMEAIFEAFVQADGSHTRQFGGTG 445 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL I + ++A G S+ G LP Sbjct: 446 LGLAITRRLVALMEGTLWAESQSGCGSTFFVELPVQP 482 >gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1105 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A + KS+F+A++SHELRTP + ILG ++++ + P ++ I Sbjct: 535 RQAEESAIKATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTP----NQRDSAETIK 590 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ--- 352 RS L+NLIN+ILD S+IEAG+ L LI IV E + + A +K I++ Sbjct: 591 RSIDGLINLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIG 650 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409 + P ++ D + +RQV++NL+ NA+KFT G V ++ + SG S+KD G Sbjct: 651 RQSPVPPMLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTG 710 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + F Q + G GLGL I + ++ GG SK+ +G Sbjct: 711 IGIPDSVSEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFW 770 Query: 470 AILPNTRVLNF-IPEDNHESTQY 491 L +P + Q+ Sbjct: 771 FSLKLLVAAPAYLPSSVPAANQF 793 >gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 1022 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 158/437 (36%), Gaps = 19/437 (4%) Query: 43 ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102 S + +VL A++ + TL L + + Sbjct: 307 RSRLAATGWTIAYVLSWADVAA--GIGVQAGALAASTLVAIVVMWLLLVRFHRRVLVPVY 364 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 + + + + + + S L L + L Sbjct: 365 ARSA--RVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDVLAQMLVPHGGDHHALAAQ 422 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + V + M ++ + Y + I + + Sbjct: 423 ALAQYDAFVANGGSGRTMMTELVLDAHGDAPLHLEVIAHSARYQGEDVLIAIFADTTAQR 482 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L+ + +E + A+ N AKS FLA+ SHE+RTPLN ILG E++E + Sbjct: 483 RLVHQ-------LEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERTAL--- 532 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + + + S + LL ++++ILD S+IEAG + +I ++ + Sbjct: 533 -DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMTVESIEFDVIAVIERELAAFAPV 591 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR- 399 A+ K + +F ID S + + D + QV+ NLL NA+KFT+ G V V VG Sbjct: 592 ARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTSEGRIVARVAVGHDVRGR 651 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I I+D G GI + + F Q +I G GLGL + ++A GG + Sbjct: 652 PELAIGIEDTGIGIDPAQHARLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISV 711 Query: 459 RSKLREGVEVIAILPNT 475 S G LP Sbjct: 712 HSAPGVGSLFTVRLPLR 728 >gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 561 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 4/266 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L+ + + + ++ E + +E +R E+N KS FLA +SHELRTPL Sbjct: 282 LYDDLENKVELRTQDLARANDILESQQIQLEEANRRLREDNQYKSDFLAIISHELRTPLT 341 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I+ F+EV+E + E ++ +I + Q LL +IN IL+++RIEAG+ EL Sbjct: 342 SIIAFAEVLEKASEDKCPKE--QKITQEIRANSQVLLRMINNILEIARIEAGKQELIIEP 399 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 I L+D++ +++ ++K+I+ + + + D +G+R+++ NLLSNA+KFT Sbjct: 400 IDLVDVINAVESVIEPLIEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPE 459 Query: 386 GGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG + V V + I+++DNG GI + + P + F Q +I G GLGL + Sbjct: 460 GGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLAL 519 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIA 470 A+ + HGG + S+L +G Sbjct: 520 AKELAELHGGWIKVVSELDKGSLFTV 545 >gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] Length = 2394 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 23/321 (7%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 +V+ + L ++ + K + + + +A+ A+ + Sbjct: 1813 FTQRNVVVLRLLCNQVGISLSNAFLFRRVRKVSATNAAMVESQKRALAQAREAEQKAKIA 1872 Query: 239 RKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 A E+ AKS FLA++SH+LRTP+N ++G SE+++ G ++ Y+ Sbjct: 1873 EAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLK----GTKLDKEQDNYV 1928 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I LL LIN+ILD S++EAG+ ++S +SL + +RE + L+ +++ +E Sbjct: 1929 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETIREVVRALRYTHRDRGLETI 1988 Query: 352 QKID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SI 405 + +D P V D + Q+ +NLLSN+ KFT G V V+ + S+ Sbjct: 1989 EDLDKVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPK-GYVKVSAMVVREGKGRVRLECSV 2047 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLRE 464 D G GI E + F Q + + G GLGL I ++I+ GG + S Sbjct: 2048 ADTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGV 2107 Query: 465 GVEVIAILPNTRVLNFIPEDN 485 G V L V P+D+ Sbjct: 2108 GTTVTFQL----VFQRAPKDS 2124 >gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B] gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B] Length = 1060 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 L+ L K ++ E+ +L AK +++ + A + + AKS FLA+ Sbjct: 350 PLAQLIKGKDELSKFAREVKKLSDERMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLAN 409 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLN ++G SEV+ ++ T ++Y+ I S Q LL+LIN++LD S+IE Sbjct: 410 MSHEIRTPLNGVIGISEVLSDTSLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIE 465 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 +G +S + + + + + ++ +A+EK I++ I + V D+ +RQV++N Sbjct: 466 SGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMN 525 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +SNAVKFT G + V I S+KD+G GI + + F Q + Sbjct: 526 FMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNST 585 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I+ ++ GG+ + S+ +G L V Sbjct: 586 TRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFELTAPVVTQE 634 >gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2] gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2] Length = 609 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 2/233 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE + F+A++SHELRTPL I ++E ++ M ++G I + ++ Sbjct: 372 EEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQLAE--RFVGVIRNETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ L +++++ E + +E +I ++ + V Sbjct: 430 RLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVV 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ NL+SNA+K+T GG + + + IS++D G GI + ++ + Sbjct: 490 IDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGIPKKDLDRIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ I+ HGGQ + S+ +G LP + Sbjct: 550 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPMS 602 >gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 929 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ +++ E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 736 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EYI + + LL LI++ILDLS+IEAG +E + + + + + Q++ Sbjct: 737 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVP 796 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + +E+ PS +V +D + QVI N ++NA+KFT+ G +HV Sbjct: 797 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 853 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI++ ++ + F + S G GLGL I +SI+ GG + S+ + Sbjct: 854 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGK 909 Query: 465 GVEVIAILP 473 G +P Sbjct: 910 GSRFWFTIP 918 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I+ + + ++ LE + ++ R A E K F A++SHE+RTPLN ++G E Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILE 296 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ + N +EY+ SG+ LL LI ILD SRIE+G+++L L +I+ Sbjct: 297 LLKNMGL----NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEIL 352 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + I +L +AQ K +E+ + ++ S+ D +RQ+++NL++NAVKFT G V + Sbjct: 353 DDVIGLLAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDR-GEVSI 411 Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + ++D G GI V +F Q + G GLGL I + Sbjct: 412 EVSLLEKKAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 ++ GG + S +G P P++ Sbjct: 472 LVDLMGGDIGVESGSGKGSIFWFTAPLEE--TSAPQE 506 >gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM 15053] gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM 15053] Length = 678 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 9/254 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E + + ++ K A + AK+ FL+SMSH++RTP+NAI+G + + E P + Sbjct: 266 EQERQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIAEANLYTP---DK 322 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+ + I+ S QHLL LINE+LD+S+IE+G+ +L+ +SL ++ + M + AQEK Sbjct: 323 LKDCLSKINASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNISDMCRPLAQEK 382 Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--- 402 N ++ +D +V D ++QV++NLL+NA+K+T GG + + V Y Sbjct: 383 NQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVREIPSDAVYKGQ 442 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + DNG G+ IP + F + + QG GLGL I Q+I+ G ++S Sbjct: 443 YEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIVNMMNGTIEVQS 502 Query: 461 KLREGVEVIAILPN 474 + G I +P Sbjct: 503 EPENGSRFIVAVPL 516 >gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 755 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 10/253 (3%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + ++ A N AKS+FLA MSHE+RTP+N ILG +++++ + K+YI Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLLKDS----HPRDDQKKYIK 417 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + +G+ LL LIN+ILD+S++EAG +L + I+R+ + + A +K IE+ Sbjct: 418 LLDDAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELAC 477 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKD 407 ++D L V D ++Q++LNL+ NAVKFT GG V+V G+ + I+D Sbjct: 478 RVDGKLPGLVQGDPVRVKQILLNLIGNAVKFTDTGG-VYVQAGYKQLTNNNVELKFEIQD 536 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 GPGI + + F Q +I QG GLGL I++ + G+ + S G Sbjct: 537 TGPGIPKDRQHAIFEHFTQADSSITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGST 596 Query: 468 VIAILPNTRVLNF 480 + V + Sbjct: 597 FTFTITMKEVKDS 609 >gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 427 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 11/316 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + L + + + ++N +I + + + ELE + Sbjct: 104 GASDYLPKNKLSPETLTRIVLSALRMYQAEILVKQTNQRISEKNRQLERINRELERKQQQ 163 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + +E + KS FLA+MSHELRTPLNAI+GFS+++ G + NET ++ +G + Sbjct: 164 IYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDI-NETQRDMLGRV 222 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+HLL LI++IL+LS+IEAGR EL + L+ +V E + LQ K +++ I Sbjct: 223 LSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITPKQLDLKVDI 282 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------SGRGQYISI 405 + + D +RQV++NLLSNA+KFT G + V++ +S+ Sbjct: 283 TLNDPIITNDPTRVRQVLINLLSNAIKFT-QHGSITVSIKSLTTKHSCMNGGSEEILLSV 341 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI++ + P + +F Q G GLGL I S++ G + S++ +G Sbjct: 342 SDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDITVESQVDKG 401 Query: 466 VEVIAILPNTRVLNFI 481 +P+ + Sbjct: 402 STFRVRIPHEVCVETA 417 >gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 918 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 16/265 (6%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ L++E A+E + KS+FLA+MSHE+RTP+ ++G SE++ N+ K+ Sbjct: 442 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMNLNDEQKDC 495 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +IHRS LL +IN+ILD S++E+GR ++ E SL ++R+ M+ AQ K ++ Sbjct: 496 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDY 555 Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--IS 404 I + V D +RQ++ N+L+N++KFT++G ++ V + S S Sbjct: 556 QSSIQDEVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFS 615 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + F Q + G GLGL I+++++ GQ + SKL + Sbjct: 616 VVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 675 Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489 G +P R P + ES Sbjct: 676 GTTATFWIPFMR----APSQDGESP 696 >gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1195 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 14/266 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E +VA+ + ++ AE N AKS FLA+MSHE+RTP+NAILGF ++++ + Sbjct: 691 ITEKKVAQEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKRI----TD 746 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + Y+ + G+ LL+LIN+ILDLS+IE+G+ E+ I L ++ E M A+ Sbjct: 747 ERSRHYLESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVETAK 806 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG-- 400 EKNIE+ I+ + V DE +RQ++ NL+ NA+KFT G ++ V Sbjct: 807 EKNIELLVNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSDKNH 866 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ISI+D G GIA + V F Q G GLGL I + G Sbjct: 867 HPSYCSLEISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEMLKG 926 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480 + S+L +G P + + Sbjct: 927 IIDLESELGKGSIFTVSFPKVTIGDS 952 >gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS 92-3] gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS 92-3] Length = 916 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 791 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 25/394 (6%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-- 168 L IA+ L L K + LI + ++ A Sbjct: 147 LSIVIALVASVAALWLSFYFRRGGSGAAWKKLGSGLIMGAAIVGMHYTGMTAAHFYLGDK 206 Query: 169 --PVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---------ITYHLFKSNVKILSC 217 + + Q + + +L + + L + I + + Sbjct: 207 SESSLGIILDQNWLGYFISGGTLFTLGLSLLGIYISNKFSFKDTEIQEKANEIHQMNQEL 266 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + ++L ++ + ++ A + N+ KS+FLA+MSHELRTPLNAI+G+SE+ E Sbjct: 267 RQLNENLEQLVKERTAQLEQAHDEAIKANMIKSQFLANMSHELRTPLNAIIGYSEM-LAE 325 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L + + E +G I +G+HLL LIN+ILD+S+IEAG+ E+ L ++++ I Sbjct: 326 EAEELGEQIFVEDLGKIRNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVIT 385 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ + ++ D +RQ+++NLLSNA KFT G + + V Sbjct: 386 TVKPLIDKNGNKL--DXXXXXXXXXTDITKLRQILINLLSNASKFT-QNGTISLEVNREP 442 Query: 398 GRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +G+ +KD G G++ ++ + F Q + G GLGL I+ S G Sbjct: 443 RKGRTGYCFRVKDTGIGMSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDG 502 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + S++ G LP + + E+ ES Sbjct: 503 SIQVESEMGAGSIFTCWLP-----SSMEEETQES 531 >gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 795 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 150/309 (48%), Gaps = 6/309 (1%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----A 226 +A+ + + M + L K+ K ++ ++ Sbjct: 488 TIAIGNWDNTNAFNPEAQQLLMAVGKQAAIAINNAQLIKALEKREELLETQNQILLRQNQ 547 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ELE + + + E KS FL+++SHELRTP+NAI+GFSE++ + P+N+ Sbjct: 548 ELESQRQHIELQNLQLLEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINS-Q 606 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I ++G++LL LIN ILDLSRIEAGR EL L ++V + + A EK Sbjct: 607 QIDMVQRILKNGKNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEK 666 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + I + D+ +RQV++NLLSNAVKFT G +++ V S I I+ Sbjct: 667 ILSMSVYIYLDNPCIVNDKSRLRQVLVNLLSNAVKFTER-GSIYIHVSELSADKLLIEIR 725 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIAE +IP + F Q K G GLGL I S++ G+ + S++ +G Sbjct: 726 DTGIGIAETQIPHIFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGS 785 Query: 467 EVIAILPNT 475 LP Sbjct: 786 SFRLELPRQ 794 >gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] Length = 1436 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 10/246 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E ++ AEE + AKS FLA+MSHE+RTPLN ++GF++++ + NET + Sbjct: 786 AQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKL----NETQHQ 841 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ +H+S LL++IN+ILD S+IEAG+ EL L ++ + ++ + Q K +E Sbjct: 842 YLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKCDLYEMASQATDIITYQIQNKGLE 901 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYIS 404 + I +L ++AD ++QV++NLL N+ KFT G + + + G S Sbjct: 902 MLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEK-GEIELKIENLESEGNSNTFRFS 960 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + +F Q + G GLGL I ++ + ++S++ + Sbjct: 961 VRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLGLTITNKLLGLMDSKLQLKSEVGK 1020 Query: 465 GVEVIA 470 G Sbjct: 1021 GSTFFF 1026 >gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1056 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 159/306 (51%), Gaps = 21/306 (6%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + TAL I + + + + E+ + +L+ + RK A+ N AKS F Sbjct: 539 IRTALLSADLIEINSEQYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTF 598 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAILGFS+++ + ++ + I+RSG+HLL+LIN+ILDLS Sbjct: 599 LANMSHELRTPLNAILGFSQLMAQNPIFVSASKE----LEIINRSGEHLLSLINDILDLS 654 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IE G+ L E ++ ML++RA K I++ + D + DE +RQV+ Sbjct: 655 KIEVGKVVLEEKPFDFYILLDTLEEMLKMRANAKGIQLISERDQIPQYIKTDENKLRQVL 714 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGEIPTVLT 422 +NL+ NA+KFT G + + V S + ++D G GI+ EI + Sbjct: 715 INLIGNAIKFTNQ-GSITLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFD 773 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA-----ILPNTRV 477 +F Q S A K ++QG GLGL I++ + GG+ ++S+L +G + V Sbjct: 774 AFVQTS-AGKQSQQGTGLGLSISRKFVQLMGGKISVKSQLGKGSLFQFNIQATTVKADEV 832 Query: 478 LNFIPE 483 ++ P+ Sbjct: 833 ISPKPQ 838 >gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1784 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I R+ Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL++IN+ILD S+IEAG+ ++ L ++ + M +A K IE+ + P+ Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV++NL++NA+KFT G V +++ + S++D+G G+ Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I + ++ GG+ + S+ G Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265 >gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 771 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 108/269 (40%), Positives = 156/269 (57%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + AEL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 502 RRLMATINDLSASRQILERQKAELSTANTNYLAEKERAEAANKAKSEFLANMSHELRTPL 561 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG +LS Sbjct: 562 NAILGFSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNVINDILDMSKIEAGHIKLSCE 621 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ EC+ + + A KNI + Q I + + AD + M+Q++LNLLSN+VKFT Sbjct: 622 KIDLAPLIEECLRLTSIPAACKNIHVEQSISSGI-KLTADRRAMKQILLNLLSNSVKFTN 680 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V ++I D G GI + + + F Q ++ G GLGL I Sbjct: 681 NGGRIAVRTRKV-DDAVVLTIADTGIGIPKSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 739 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ H G+ IRS+ G + +P Sbjct: 740 SRSLTLLHHGRMRIRSREGIGTVIAIRIP 768 >gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 844 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 9/288 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + S+ N+K+L + + L + S +T+ AE N AKS+ Sbjct: 322 LWGLLASYQNSAPRDWSPQNIKLLKQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQ 381 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA MSHELRTPLNAILGFS+++ NE +EYI I+RSG+HLL LI +ILD+ Sbjct: 382 FLAHMSHELRTPLNAILGFSQLL---NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDM 438 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 ++IEAG+ L ++ +L +++ M L+AQ+K +++F +IDPS+ + DE +RQ Sbjct: 439 AKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQ 498 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427 V++NLLSNA+KFT G++ + V ++D+GPGI E P + F Q Sbjct: 499 VLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQT 557 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + K+ +G GLGL I++ ++ GG + L G LP Sbjct: 558 ELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLPVE 604 >gi|254227606|ref|ZP_04921037.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395654|ref|YP_003287507.1| sensor histidine kinase [Vibrio sp. Ex25] gi|151939648|gb|EDN58475.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339248|gb|ACY53042.1| sensor histidine kinase [Vibrio sp. Ex25] Length = 785 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 8/269 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +E R +AE AKS FLA+MSHELRTP+N +LG S++I ET N T K Sbjct: 250 KQLNLEIEEARNKAERAAKAKSSFLAAMSHELRTPMNGVLGLSQMIAEET----NEPTTK 305 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I SGQHL+ ++N+ILD S++E + E ++ +L ++ ++ EKNI Sbjct: 306 EYVKVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFNLDQVISPVCSAIKPLIDEKNI 365 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIK 406 E+ + + P D +RQ++ NL NAVKFT+ G V + + + Sbjct: 366 ELIVENEVPEYVEFTGDCARLRQILFNLAGNAVKFTSE-GHVLIRTELDKVNHCLVMIVS 424 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA + V SF Q + G GLGL I + + G+ ++S G Sbjct: 425 DTGIGIALDKQEHVFNSFEQADSSTTRKFGGTGLGLAIVKKLTGLMDGKITLKSVEGVGS 484 Query: 467 EVIAILPNTRVLNFIPED-NHESTQYKCY 494 + I LP V +P+ T+ K + Sbjct: 485 QFIVELPIPWVECELPKAQEPPKTRKKTH 513 >gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 778 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 16/338 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-YITY 205 +A +I A + L + V +S ++V T ++ ++ L + ++ Sbjct: 285 LAQTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLS 344 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSH 258 L K ++ E + L E E AK + ++ AE E + AKS FLA+MSH Sbjct: 345 ELIKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSH 404 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++G SEV+ + T ++Y+ I S Q LL+LIN++LD S+IE+G Sbjct: 405 EIRTPLNGVIGISEVLADTPLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIESGM 460 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +S + + + + + ++ +A+EK IE+ I P+ + D+ +RQVI+N +S Sbjct: 461 LLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMS 520 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NAVKFT G + +T ++ I S++D+G GI E + + F Q + Sbjct: 521 NAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQ 580 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+ ++ GG + S+ G L Sbjct: 581 FGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618 >gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 916 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 588 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 8/273 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRT 262 L++ + + ++ L A ++ + S R ++A+ N K FLA++SHELRT Sbjct: 157 RSLYQDLEHRVQERTQELAL-ANKQLKEDASIRQRLYEQAQTANRLKDEFLATVSHELRT 215 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILG S++++ + E K I IHR+ Q + +IN++LD+SRI +G+ +L Sbjct: 216 PLNVILGHSDILKD---PATSPEEAKVSINAIHRNAQIQVQIINDLLDVSRIISGKLQLH 272 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 I + +V +Q+ A+ KNI++ + L SV D + ++QV+ NLLSNA+KF Sbjct: 273 VKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQVLWNLLSNAIKF 332 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T GG + V + R I + DNG GI +P V F Q G+GLGL Sbjct: 333 TPKGGNITVKLSNVESR-VQIDVIDNGKGIDPEFLPYVFERFRQEDATTTRRYGGLGLGL 391 Query: 443 PIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 I + I+ HGG S +G + LP Sbjct: 392 AIVRHIVEGHGGTVAATSAGPNQGAKFTVSLPV 424 >gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591] gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591] Length = 922 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 156/349 (44%), Gaps = 27/349 (7%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + LL + ++ L + L V P+ + T + LD + G L Sbjct: 176 FMAAMLLLFCMGVAMLLAYRLMRDV---TTPIRNMVETVDRIRRGQLDSRVEG---YMLG 229 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247 + + + + + E I ++E+ D +KRA+E Sbjct: 230 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 289 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ +T+ T K+Y+ I RS +LLN+IN+ Sbjct: 290 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 345 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LD S++EAG+ L SL + + E I++L A EK +E+ I + D Sbjct: 346 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 405 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + + + I IKD G GIAE + + Sbjct: 406 RLQQIVTNLLGNAIKFTEQ-GNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQ 464 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG SK +G Sbjct: 465 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCT 513 >gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1009 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 10/260 (3%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E A+ ++E + A+ NLAKS FLA+MSHE+RTPLN ++G + ++ + N Sbjct: 339 QEDARLKAEEMARDAQAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETEL----NSQQ 394 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + Y + SG+ LL+LIN+ILDLS+IEA + EL E L + + + +RA E+ Sbjct: 395 RRYAETMLYSGESLLSLINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERG 454 Query: 348 IEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402 +E+ P L V D +RQV+ NL+ N++KFT G V + V Sbjct: 455 LELICLFSPGLSPLVKGDCGRLRQVLANLVGNSIKFTEK-GEVAIKVSSRDKDEENVLLS 513 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D G GI + ++ T+ F Q + G GLGL I + ++ GG+ + S+ Sbjct: 514 FEISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSSRE 573 Query: 463 REGVEVIAILPNTRVLNFIP 482 G + +V IP Sbjct: 574 GSGSVFSFTVLFRKVAGEIP 593 >gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] Length = 1358 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 16/265 (6%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ L++E A+E + KS+FLA+MSHE+RTP+ ++G SE++ N+ K+ Sbjct: 720 SRLLANEA--AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELL----FDMNLNDEQKDC 773 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +IHRS LL +IN+ILD S++E+GR ++ E SL ++R+ M+ AQ K ++ Sbjct: 774 AENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDY 833 Query: 351 FQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--IS 404 I + V D +RQ++ N+L+N++KFT++G ++ V + S S Sbjct: 834 QSSIQDEVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFS 893 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + F Q + G GLGL I+++++ GQ + SKL + Sbjct: 894 VVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQ 953 Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489 G +P R P + ES Sbjct: 954 GTTATFWIPFMR----APSQDGESP 974 >gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 791 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F+ + +S ++ D I + + + R RAE N AKS FLA MS Sbjct: 329 LFWEAASISAIRSEQGKITHFVAVKDDITARKKLERELQQARDRAESSNRAKSEFLALMS 388 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NAILG SE++ + +E + R+ LL+LIN+ILDLSR+E+G Sbjct: 389 HEIRTPMNAILGMSELLAESNLSG----EQRELLTVQRRAALALLDLINDILDLSRVESG 444 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R EL + + L D E + + +A +KN+ ++ L +AD +RQV++NL+ Sbjct: 445 RLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDLPKTYFADRARLRQVMINLV 504 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT GG V ++V S +G S+ D+G GI + F Q + Sbjct: 505 GNAIKFTQQGG-VWISVERLSQQGEMVKLKFSVVDSGCGIPSEAQSQIFEPFTQADAYVT 563 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+Q ++ GG + S +G IL Sbjct: 564 RHHGGTGLGLTISQRLVQLFGGTLQVESTPNQGSRFSFIL 603 >gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 595 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 7/335 (2%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 +++ + F + ++ P L + +I F Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERFLQAWYFEQGNDAEIIAPLPPQVNELFIRV 317 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEE--ENLAKSRFLASMSH 258 + +S L + + + R EE + + F+A++SH Sbjct: 318 VREEKEQSIELSLQGRTWVILMTPLYDKTNVRGAVAVLRDMTEERRLDKLRKDFIANVSH 377 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTP+ + G+SE I + +E KE I+ + L+N++LDL+R+EAG Sbjct: 378 ELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGH 435 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L+ + L + I Q A+EK I++ + D + D + QV+ NL+ N Sbjct: 436 ITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIRIRMDPDRIEQVLTNLIDN 495 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A++ T G V + + +G G I ++D+G GI E ++P V F + A G Sbjct: 496 AIRHTDQNGTVKI-IAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFYKADKARTRGRSGT 554 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL IA++I+ H G + SKL EG LP Sbjct: 555 GLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589 >gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B] gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B] Length = 753 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 17/265 (6%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R+RAE N AKS FLA+MSHE+RTP+N ++G +E++ ++ E + Y Sbjct: 205 EEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDTSL----TEEQRLYA 260 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA + L L + E +++LQ A++K + + Sbjct: 261 NTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHEVVMLLQANARDKGLTLL 320 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405 D + + D +RQ++ NL+ NAVKFT G V V +ISI Sbjct: 321 VDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQ-GHVTARVTGVPHPEDNTVMLHISI 379 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D+G GI E +I + F Q +G GLGL I + ++ G+ + S+ +G Sbjct: 380 EDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKMMDGEIWVESEFGKG 439 Query: 466 VEVIAILPN-----TRV-LNFIPED 484 LP ++V +P+D Sbjct: 440 SCFGFRLPLVVADGSQVNAPELPDD 464 >gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 929 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 27/322 (8%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 LS + I+ ++ +L + + L NV+++ E Sbjct: 221 LSARRILYKNLQMGLGGAILLLVIGCGILLARQLAAVNVQLMQSGEEMR----------- 269 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +++AE + AKS FLA+MSHE+RTP+N ILG +E++ + N +Y+ Sbjct: 270 ---IAKEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTEL----NPQQFDYLRS 322 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + S ++L+++IN+ILD S+IE GR E L ++ + + L +RA +K +E+ + Sbjct: 323 VKVSAENLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQ 382 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKD 407 +DP L ++ D +RQV+LNL NAVKFT G V + V ++D Sbjct: 383 VDPDLPDTLIGDPGRLRQVLLNLAGNAVKFTDQ-GEVELLVSKQQELPGKELLLRFEVRD 441 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI+ + F Q ++ G GLGL I+ ++ GG+ + S +G Sbjct: 442 RGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGST 501 Query: 468 VIAILPNTRVLNFIPEDNHEST 489 L + P+ + T Sbjct: 502 FWFTL--RCQVQEQPQHEAQQT 521 >gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 844 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 9/288 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + S+ N+K+L + + L + S +T+ AE N AKS+ Sbjct: 322 LWGLLASYQNSAPRDWSPQNIKLLKQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQ 381 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA MSHELRTPLNAILGFS+++ NE +EYI I+RSG+HLL LI +ILD+ Sbjct: 382 FLAHMSHELRTPLNAILGFSQLL---NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDM 438 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 ++IEAG+ L ++ +L +++ M L+AQ+K +++F +IDPS+ + DE +RQ Sbjct: 439 AKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQ 498 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427 V++NLLSNA+KFT G++ + V ++D+GPGI E P + F Q Sbjct: 499 VLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQT 557 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + K+ +G GLGL I++ ++ GG + L G LP Sbjct: 558 ELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLPVE 604 >gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 845 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 12/274 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E + AE N AKS+FLA+MSHE+RTPLN I+GF++++ + + Sbjct: 431 ITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTDLLLYDIESTEAD 490 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + SG+HLL LINEILDLS+IE+G+ + + S I+ + I +L+ + + Sbjct: 491 --RREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQILTDVISVLRPKFE 548 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RG 400 EK I+I + D + + V D ++Q++LN++ NA+KFT G V + + Sbjct: 549 EKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQT-GEVRIVARLEAEATRSR 607 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GI +G++ + F Q ++ G GLGL I++++ GG S Sbjct: 608 LIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHAES 667 Query: 461 KLREGVEVIAI-----LPNTRVLNFIPEDNHEST 489 G + L + P ++ + Sbjct: 668 VEGLGSKFTITVDAGNLTLSSEPKPAPPEDAPTA 701 >gi|93609097|gb|ABF13477.1| DRK1 histidine kinase [Ajellomyces dermatitidis] Length = 1274 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 674 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 733 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 734 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 791 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLAIS 849 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 850 RSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 909 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 910 LVNLMGGDVWVTSEYGLGSSFHFT 933 >gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1603 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 14/340 (4%) Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 F + A + I + + ++ F + Y + + Sbjct: 813 TFKIRAANAQGVWTPQPRTLKVIITPPWWRTVWAILLFLLLIAGFAGMFYRWRMTTQRQN 872 Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 Q E+ EL+ + ++ R+ R ++ + K +FLA+ SHELRTPL I+G SE Sbjct: 873 LQQRER-----ELQQEREQLEKERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSE 927 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + + P K + + SG+ L +L+N+ILD S+++ EL ISL + Sbjct: 928 ALLEDELDP----ERKANLTMVVSSGKRLNSLVNDILDFSKLKNADIELDLRPISLHSMA 983 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + K+IE+ + + ADE ++Q++ NLL NAVKFT G + + Sbjct: 984 DVVLKNISPLVAGKSIELLNSVSVDFPAASADENRLQQILYNLLGNAVKFT-ESGYIKID 1042 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + ++D GPGI + + F QG + A G GLGL I++ ++ H Sbjct: 1043 A-LERDNDLVVCVEDTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTGLGLSISKRLVELH 1101 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG + S++ +G + L + +P E ++ K Sbjct: 1102 GGTMWLESEIDQGSKFFFSLQKSISEGELPVQKVEVSKNK 1141 >gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 1660 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 28/286 (9%) Query: 223 DLIAELEVAKSLSDETRKRAE------------------EENLAKSRFLASMSHELRTPL 264 + I++ + A+ + + E N AKS FLA+MSHELRTPL Sbjct: 1160 EDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAANRAKSDFLANMSHELRTPL 1219 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ILG+++V++ +++ + IH+SG+HLL LI++ILD+++IEA + EL+ S Sbjct: 1220 NGILGYAQVLKR---DHHLLPCHQQALNTIHQSGEHLLTLIDDILDIAKIEARKLELNIS 1276 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 I ++ + + Q+RAQEKNI+ + SL + +D+K +RQ++LNLLSNA+KFT Sbjct: 1277 DIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQILLNLLSNAIKFT 1336 Query: 384 AIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G+V ++V Q I +I D G GI+ +I + F Q + +G G Sbjct: 1337 DQ-GQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGD-LNRRAEGTG 1394 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL I++ ++ GG S +G +P +P Sbjct: 1395 LGLSISRQLVELMGGTLQAESCEEKGSTFWFSIPYKFSKQSVPAQT 1440 >gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01] gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01] Length = 1058 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 L+ L K ++ E+ +L AK +++ + A + + AKS FLA+ Sbjct: 348 PLAQLIKGKDELSKFAREVKKLSDERMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLAN 407 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLN ++G SEV+ ++ T ++Y+ I S Q LL+LIN++LD S+IE Sbjct: 408 MSHEIRTPLNGVIGISEVLSDTSLTA----TQRDYVDTIETSSQLLLSLINDVLDFSKIE 463 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 +G +S + + + + + ++ +A+EK I++ I + V D+ +RQV++N Sbjct: 464 SGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMN 523 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +SNAVKFT G + V I S+KD+G GI + + F Q + Sbjct: 524 FMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNST 583 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I+ ++ GG+ + S+ +G L V Sbjct: 584 TRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFELTAPVVTQE 632 >gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 918 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 177/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L D Sbjct: 625 TRFSVDLPLSPALEAGEADE 644 >gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 891 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 12/256 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 ++ + ++ AE + AKS FL+ MSHELRTP+N I+G + ++ + Sbjct: 617 MVFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---- 672 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E + YI I S L+ ++NEILDLS+IEAG+ L + L ++V + ++A Sbjct: 673 DEEQRSYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQA 732 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 EK IE+ +D + + D +RQV++NL+SNA+KFT GRV++ V + Sbjct: 733 MEKGIELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTER-GRVNIFVERKAYSRHK 791 Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+ D G GI + F Q A+ G GLGL I ++++ GG Sbjct: 792 NRCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSI 851 Query: 457 LIRSKLREGVEVIAIL 472 + S G L Sbjct: 852 GVDSDEARGATFRFQL 867 >gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] Length = 1161 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 6/241 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 K ++ R+ AE+ AKS FLA+MSHE+RTP+N ++G +E++ + Y+ Sbjct: 640 KEIAQREREAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRETPLDL----QQTGYV 695 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH SG L++LIN+ILD S+IE+G+ E+ ++ L+ ++ EC + ++ KN+ ++ Sbjct: 696 NTIHNSGMALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQQSISKNLGLY 755 Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 IDP + + +D +RQ++LN LSNA KFT G V + + I ++D G Sbjct: 756 VDIDPQINDRIISDPARIRQILLNFLSNAFKFTET-GSVRIRADSLADGRIRIGVRDTGI 814 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+++ + + SF Q ++ G GLGL I++ + GG+ + S+ +G E Sbjct: 815 GLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISESGKGSEFWF 874 Query: 471 I 471 Sbjct: 875 S 875 >gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR] Length = 1288 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934 >gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae NTUH-K2044] gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 916 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 746 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 144/272 (52%), Gaps = 12/272 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L S ++L E L+ E + ++ +K A+E N AKS FL+++SHELRTP Sbjct: 253 VEVLADSFNQLLRRMKE---LLQEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTP 309 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ILG+++++E + + + IH SG HLL LIN++LDLS+IEA + +L Sbjct: 310 LNGILGYAQILERNS---NLTPLQTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYP 366 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + I + + M+ +A++K+I + DP+L V DEK +RQ++LNLL N VKF Sbjct: 367 TDIDFHTFLNTVVEMIHTKARQKDIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKF 426 Query: 383 TAIGGRV-HVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + V V S + I D G GI E + TV F Q +G Sbjct: 427 TDQGKVIFKVQVTPLSLTINQTFRFEIIDTGVGINEEYLETVFKPFEQVGNVQHR-SEGT 485 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GLGL I++ ++ GG+ + SK+ +G + Sbjct: 486 GLGLAISKQLIELMGGELKVESKVNQGSKFWF 517 >gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] Length = 924 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 12/278 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ + + + E +K A++ N KS FLA MSHELRTPLN ++GF+ Sbjct: 257 QATSDYRETLEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFT---- 312 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + N+ K+Y+ I S L+ +I++ILD S++EAG EL L D V E Sbjct: 313 RQLYKTPLNKNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEV 372 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + +L A +K +E+ I+P + + D +QV++NLLSNA+KFT G +V ++ Sbjct: 373 MTLLAPSAHDKQLELSIYINPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGAIKVDISH 432 Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 +S+ D G GI + + T+FGQ +I G GLGL I + I+ Sbjct: 433 RLLDEERTSVLVSVADTGVGIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEA 492 Query: 452 HGGQFLIRSKLREGVEVI----AILPNTRVLNFIPEDN 485 G+ + S G LPN +N +P + Sbjct: 493 MSGRITLNSAPGSGTCFTFNGVFRLPNHVFINDLPTQS 530 >gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704] gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704] Length = 1290 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 684 EMDELKRKINKMISNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 743 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 744 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 800 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 801 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 859 Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 860 TISKSTREICQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 919 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 920 SKRLVNLMGGDVWVTSEFGHGSTFHFT 946 >gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 575 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + + +++ I + L+ L Sbjct: 342 LERVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + + +++ ++V E I +L+++A++KNI+ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VT+ I +KD G GI E EI + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTLE-KPNGMVVIKVKDTGIGIPEKEIERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ ++S+ G E +P + + Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIPIKKKADP 573 >gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 918 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L+ D Sbjct: 625 TRFSVDLPLSPALDAGEADE 644 >gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2] gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 600 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + G + ET + ++ I+ Sbjct: 361 AIRRLEN---MRSEFVANVSHELKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDE 415 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L LI +IL+LS+IE+ R L S I + + + L A +K I + I Sbjct: 416 SERLNRLIGDILELSKIESKRSPLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDE 475 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIA 413 L + ADE ++Q+ LNLLSN + +T GG+V + V ++ D G GI Sbjct: 476 L-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIP 534 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++P + F + G GLGL I + ++ H G + S+L G LP Sbjct: 535 KKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594 Query: 474 N 474 Sbjct: 595 L 595 >gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 591 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 6/237 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + + + ET + ++ I+ Sbjct: 358 AIRRLE---RMRSEFVANVSHELKTPIAAVKGFAETLLGGAV--NDEETARSFLQIIYDE 412 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI +IL LS+IE+ R L S + + + + + M++ A +K+I++ +++ Sbjct: 413 SDRLNRLIGDILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHG 472 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V ADE +RQ+++N+++N V +T GG+V V + I I D G GI + ++ Sbjct: 473 L-YVEADEDRLRQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDL 531 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 P + F + A + G GLGL I + ++ H G + S + G + LP Sbjct: 532 PRIFERFYRVDKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELPV 588 >gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 834 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 17/321 (5%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + L AL + N+ I +AE D + + Sbjct: 153 VSHLFFSKLKRNMQHAFLMDALLTLCLLLIAWVVINILIRKLRAEIDA----RKQTEKEL 208 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 +++AE + AKS F+A++SHE+RTP+NAILG +++ + + +++ I+ Sbjct: 209 ILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRTDL----DARQTDFLNRIN 264 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + + LL LIN+ILD S+IEAG+ ++ SL ++++ M +A EK +E+ + Sbjct: 265 VAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIFSVS 324 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-----GQYISIKDN 408 + + D + Q++LNL++NA+KFT G V V + SI+D Sbjct: 325 QDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSIRDT 384 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA + + +F Q + +G GLGL I + ++ GG+ +S +G Sbjct: 385 GVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKGSTF 444 Query: 469 IAI--LPNTRVLNFIPEDNHE 487 + P++ E Sbjct: 445 VFTAGFQVDTDEAPPPQEVKE 465 >gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 633 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 11/262 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E A + +TR+ AE+ N AKS FLA MSHELRTP+N +LG +++E M + Sbjct: 243 EQHQAMAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRM----TDE 298 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 EY S +HLL +IN+ILD SRIE EL +L ++V C Q A ++ Sbjct: 299 QHEYTALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQR 358 Query: 347 NIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI- 403 + + + + V D +RQ+++NL+ NA+KFT GRV V W + + + Sbjct: 359 KLGLDLLVPDDMQALQVQGDPTRIRQILVNLIGNALKFTEQ-GRVTVQCQWQALDHELLW 417 Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D+G GI + + +F Q +I G GLGLPIA+++ GG +S Sbjct: 418 FTCTVRDSGIGIPAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQS 477 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + +G +P P Sbjct: 478 EEGQGSVFTLEIPLALSRQTPP 499 >gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 769 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 113/295 (38%), Positives = 160/295 (54%), Gaps = 12/295 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETR------K 240 G + T I H K L +A DL + A L+D R + Sbjct: 469 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQTKLEKQAHQLADLARKYGDEKR 528 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE N KS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 529 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 588 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR L + L + E + ++ RA+ K++++ ++ + Sbjct: 589 LLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRAEVGDQIPI 648 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GRV V +G + I D G GI + + Sbjct: 649 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-SRIAGDSIVLMIADTGIGIPPQSLRRL 706 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F Q + + G GLGL IA+S++ HGG +RS L EG V+ LP Sbjct: 707 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSLPRA 761 >gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 927 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 18/277 (6%) Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ ++NV + + E + I EL+ +++ E +++AE + KS FLA+M Sbjct: 659 WNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANM 718 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLNAI+GFS ++ + E ++Y+ I + LL LI++ILDLS+IEA Sbjct: 719 SHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIEA 774 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ E + + + + + ++++A+ +E+ + +D + QVI N + Sbjct: 775 GTFDFVEKELDVNMLCEDIVRFMKMKAK-PGVEVLFDRHLPECRIVSDRNRLNQVIANFV 833 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +NA+KFT G + V + D G GI + F + + Sbjct: 834 NNAIKFTTA-GSIRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKL----NTFVH 888 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++SI+ GG + S+ +G +LP Sbjct: 889 GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 925 >gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 940 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 18/277 (6%) Query: 205 YHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ ++NV + + E + I EL+ +++ E +++AE + KS FLA+M Sbjct: 672 WNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANM 731 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLNAI+GFS ++ + E ++Y+ I + LL LI++ILDLS+IEA Sbjct: 732 SHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIEA 787 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ E + + + + + ++++A+ +E+ + +D + QVI N + Sbjct: 788 GTFDFVEKELDVNMLCEDIVRFMKMKAK-PGVEVLFDRHLPECRIVSDRNRLNQVIANFV 846 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +NA+KFT G + V + D G GI + F + + Sbjct: 847 NNAIKFTTA-GSIRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKL----NTFVH 901 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++SI+ GG + S+ +G +LP Sbjct: 902 GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 938 >gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 932 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 8/278 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLSN----SQMDYLQTIEKSANNLLNIINDILDFSKLEAG 355 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L + + E I + A EK +EI K+DP + + D ++Q++ NL+ Sbjct: 356 KLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLV 415 Query: 377 SNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 N++KFT G V V + SG + ++D G GI+E + + +F Q +I Sbjct: 416 GNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISR 475 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I Q +++ GG+ + S+L +G Sbjct: 476 RYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513 >gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK] gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK] Length = 697 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + RK+AE N AKS FLA MSHE+RTPLNA+LG + + + + Sbjct: 305 ITHRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----D 360 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E++ + +S Q LL +IN+ILDLSRIE+G++EL + I + D + + L +A+ Sbjct: 361 EKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNADIHIADSINLVVNQLNEQAK 420 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 KNI + +ID S+ S+ D+ + QV+ NL+ NA+KFT + G V V+V + I Sbjct: 421 RKNITLTTQIDASVPDSMLGDKNRIAQVMFNLIGNAIKFTNV-GSVRVSVKAVNNN-IEI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA T+ F Q +I G GLGL I+ ++ G + S L Sbjct: 479 AVIDTGIGIAPYAQKTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSVLN 538 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G +P T V++ +D E Sbjct: 539 VGSCFTVSIPITSVVDETEKDLPEQ 563 >gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1021 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 143/279 (51%), Gaps = 15/279 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + R A E + KS+FLA++SHE+RTP+ +++G +++ + Sbjct: 522 ITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAER 581 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + +HL +++N++LDLS+IEAGR L S ++R + +L ++A+ Sbjct: 582 EETTSLLRL---AAEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQAR 638 Query: 345 EKNIEIFQKI----DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTS 397 + IE+ + +PS S+ D +RQ+++NL+SNA+KF+ GGRV V G Sbjct: 639 ARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEED 698 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 R I + D G GIA +I + T + Q + G GLGL I++ + GG+ Sbjct: 699 SRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELH 758 Query: 458 IRSKLREGVEVIAILPNTRVLNF-----IPEDNHESTQY 491 +RS++ G LP + + P +N +++ + Sbjct: 759 VRSQVGVGSTFTLTLPCPKEASAFEPSISPSENSKNSDF 797 >gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. 230613] Length = 522 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 299 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 354 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI I + + + ++ Sbjct: 355 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 413 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 414 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 472 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 473 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 520 >gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] Length = 569 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51] gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 564 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 3/243 (1%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + +E +R E+N KS FLA +SHELRTPL +I+ F+EV+E + E + Sbjct: 308 ESQQIQLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKCPKE--Q 365 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + +I + Q LL +IN IL+++RIEAG+ EL I L+D++ +++ ++K+I Sbjct: 366 KITQEIRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSI 425 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKD 407 + + + + D +G+R+++ NLLSNA+KFT GG + V V + I+++D Sbjct: 426 QYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQD 485 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG GI + + P + F Q +I G GLGL +A+ + HGG + S+L +G Sbjct: 486 NGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSL 545 Query: 468 VIA 470 Sbjct: 546 FTV 548 >gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 22/373 (5%) Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169 L W L L + G + + +A L L+AL + N L Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L T+ + LA + L S + + + I E Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + ISI Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 E LP TR Sbjct: 502 SEFWISLRLPKTR 514 >gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 358 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 143/288 (49%), Gaps = 15/288 (5%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 LA SF I ++ E+ +L + K F Sbjct: 60 LAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNEELIRAK-------RLKDEF 112 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAILG +E ++ E GP+ N+ + + + RS HLL LIN+ILD++ Sbjct: 113 LANMSHELRTPLNAILGMTEGLQEEVFGPV-NDRQLKALQTVERSASHLLALINDILDVA 171 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IE+G+ EL S ++ + + I ++ +A +K I++ + L + DE+ +RQV+ Sbjct: 172 KIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKLPDIILDERRIRQVL 231 Query: 373 LNLLSNAVKFTAIGGRVHVTV-------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +NLL+NAVKFT GG + + V S++D G GI+ I + F Sbjct: 232 INLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIGISPENIKKLFQPFM 291 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q A+ QG GLGL + + I+ HGG+ + S++ G LP Sbjct: 292 QIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVLLGSCFSIDLP 339 >gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 568 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 4/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTP+ I + E + ++ E K+++ I + L Sbjct: 342 LDTMRKEFVANVSHELRTPIATIKSYVETLL---YSDVDAEYSKKFLKIIDSETDRMTRL 398 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS++++ L +L DIV E I L + AQ+KN ++ + + V+ D Sbjct: 399 VKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYID 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI+NL++NA+K+T G + + + I ++DNG GI + ++P + F Sbjct: 459 RDKMEQVIVNLVTNAIKYTPENGMIKIMTEYDESFASLI-VEDNGIGIPKEDLPRIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + A G GLGL I + I+ H G+ I S++ +G V LP Sbjct: 518 YRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella pneumoniae 342] gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella pneumoniae 342] Length = 916 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 1318 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 27/290 (9%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L+ + L E RK AEE AKS FLA+MSHE++TP+N LG + ++ + Sbjct: 762 LLKQERENNRLLKEARKAAEEAVQAKSEFLANMSHEIKTPMNGALGMAGLLLDTELQS-- 819 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + ++ I G L+ +IN+ILD S+IEAG+ +L E + +L + E + +L ++A Sbjct: 820 --EQRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEECSFNLRTCIEEALDLLAVKA 877 Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 +K +E+ + V D +RQ+++NL+ NA+KFT + G V V VG + Sbjct: 878 AQKQLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFTNV-GEVTVAVGAREIQHVC 936 Query: 400 --------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 I++ D G GI + + SF Q +I G GL L I+ Sbjct: 937 ALDPQKIAEEVQHFEVEIAVNDTGIGIPPDNMSRLFDSFSQVDSSITRQYGGTGLALTIS 996 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + + GG+ +RS++ +G + L PE + + + A Sbjct: 997 KHLCELMGGRMWVRSEVGKGSSFAFTV----QLQVKPESAGLAAETRTPA 1042 >gi|120598068|ref|YP_962642.1| hybrid sensory histidine kinase BarA [Shewanella sp. W3-18-1] gi|146293861|ref|YP_001184285.1| hybrid sensory histidine kinase BarA [Shewanella putrefaciens CN-32] gi|120558161|gb|ABM24088.1| Hpt sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145565551|gb|ABP76486.1| Hpt sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 933 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +L+ + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIMVLLGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S++EAG+ L L + + + + ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPNVPDHVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 524 >gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] Length = 878 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 137/265 (51%), Gaps = 8/265 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + +I + + + ++ AE + AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 359 QLNQIIDQQKEYERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHL 418 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + KE + DI S LL LIN+ILDLS+IE+G LS + L ++V + + ML Sbjct: 419 SS----SQKEILSDIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNML 474 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +A ++++E+ +L + D+ +QV++NLLSNAVKFT G V V + G Sbjct: 475 TSKALKQDVELKVDFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQ-GSVSVEL-LIEG 532 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D+G GI+ ++ + F Q +I G GLGL I ++ G + Sbjct: 533 QQLVCHVADSGVGISPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISV 592 Query: 459 RSKLREGVEVIAILPNTRVLNFIPE 483 S G +P V + PE Sbjct: 593 SSTPGVGSRFTVSVPLE-VSDQQPE 616 >gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 418 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL AI GF E +E + + ET +E++ I + L++L+ ++L L Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGAL--EDRETAQEFLQIIASETERLIHLVEDLLKL 254 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 SR+E + L ++L +++ ++ + RA+EK + + P L V D + + QV Sbjct: 255 SRLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQV 314 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +NL+ NA+K+T + GRV + G I ++D G GI + +P V F + A Sbjct: 315 FVNLIDNALKYTPV-GRVRIR-GEYQSGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRAR 372 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ HGG+ + S+L +G LP Sbjct: 373 SRASGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414 >gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus] Length = 1177 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 14/312 (4%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 ++ I+ G L L +T ++ + +L E L + AK+ A Sbjct: 456 IVPIASGGDLLGVLFLYTDPNPTRSEARMVMLRQVGEMLALAILEDRAKASLKAAHDAAV 515 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AKS FLA+MSHE+RTP+N +LG E+++ M + + + S + LL Sbjct: 516 DAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDM----SREQWDLVETASNSAESLLE 571 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362 +IN ILD S++EAG+ E+ + +L D+V E +L RA +K +E+ + L +W Sbjct: 572 IINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWI 631 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIP 418 D +RQ++ NLL N+VKFT G V V V + I+D G GIA Sbjct: 632 GDPTRIRQILTNLLGNSVKFTER-GEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQA 690 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV- 477 + F Q + G GLGL I ++++ GG + S G LP + Sbjct: 691 RLFQPFTQADGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLEPLP 750 Query: 478 ---LNFIPEDNH 486 +P+ +H Sbjct: 751 GASAPALPDFSH 762 >gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 902 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 13/341 (3%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFL---SFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 I ++A + + A L L P ++ + +L Sbjct: 55 INRTALAVFGVEAGAGLPATLGGLARLEGDGPLPGALSRGLAGADLAALSGEFWELLLRR 114 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 A T + L ++ I+ ++ + + + AE AKS FLA+ Sbjct: 115 ADGSATQVEAGLTVVDMSGERTGTLFIRDISNRKLQEGKLKQAMEEAESATRAKSDFLAN 174 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+NAI+G + + + P ++Y+ IH SG+HLL +IN+ILD S+IE Sbjct: 175 MSHEIRTPMNAIIGLAHLALRTGLDP----KQRDYLQKIHNSGKHLLGIINDILDFSKIE 230 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 AG+ +L + L ++ +L +A+ K +E+ I P L + D + Q+++N Sbjct: 231 AGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELIFDIGPGLDRSLIGDPLRLGQILIN 290 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +NAVKFT G V V RG + + D G G++ + + SF Q + Sbjct: 291 YANNAVKFTER-GEVTVRARCREERGDSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTS 349 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + GG+ + S+ +G Sbjct: 350 TSRKYGGTGLGLAISRKLAEMMGGEVGVDSEPGKGSTFWFT 390 >gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1187 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 154/334 (46%), Gaps = 12/334 (3%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 +F P L QA + H + + + T+ + + +L Sbjct: 730 ARMFSQLPPGSYRLQLQASLGHHSSWSPVQEFGFSVAPPWWRTTWATLVAVLLVLLLIVG 789 Query: 221 KDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 L +++ R+ AE+ ++AKSRFLA++ HE+RTP+ +LG SE++ Sbjct: 790 GGWLYRRRVRSRAQWQLALHKRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDT 849 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + Y+ I R+G HLL L+N+ LDL+RIEAG+ EL + + E Sbjct: 850 SLDS----RQRSYVESIRRAGDHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAG 905 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ A+++ + ++ P + +V D +RQ++LNLL NAVKFT G V + +G Sbjct: 906 LMAPVAEQRGLAFHLRVAPEMPAAVRGDPGRVRQILLNLLGNAVKFTDR-GEVVLELGTV 964 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQ 455 S G ++D GPG++E + + F Q A S G GLGL I Q + GG+ Sbjct: 965 SPEGLVFVVRDTGPGLSEEQKARLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGR 1024 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S L G LP P+ ST Sbjct: 1025 IEVDSTLGHGTAFRVQLPL--PTAAAPDPQPRST 1056 >gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] Length = 811 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 8/259 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E ++ +L + + AE+ N AK+ FL+ MSHE+RTP+NAI+G + + Sbjct: 265 TELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMTTIAAAYI 324 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + + I S +HL+ LIN+ILD+S+I G+ +++ L +V + Sbjct: 325 ---DDRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVVESVSSI 381 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + +A +K + + + +S+ D + Q++LNLLSNA+KFT GG + + + Sbjct: 382 VYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRMEIRQIK 441 Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G G+A+ I + F Q + G GLG+ I ++++ G Sbjct: 442 KNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKNLVTLMG 501 Query: 454 GQFLIRSKLREGVEVIAIL 472 G ++SK +G L Sbjct: 502 GTISVKSKPGKGTTFTVEL 520 >gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1] gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1] Length = 916 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 15/320 (4%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--- 220 + V++ + + + L L F + + Q E Sbjct: 306 LWLTIGLTVSIMAALFILSINITRRIIFFLNNTLETFERLENQEESDTLASTEGQDEFSH 365 Query: 221 ----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + LI E + ++ AE N+AKS FLA+MSHE+RTPLN I+G S ++ Sbjct: 366 FGKKMNKLIHERRENEHRMLAAKEEAERANVAKSSFLANMSHEIRTPLNGIIGMSGILSE 425 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P+ ++Y+ I S Q LL LIN+ILD+S+IE+G +S + +L +I + I Sbjct: 426 SNLDPI----QRDYLNTIDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTI 481 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A+EK++++ + P + + D+ +RQ+++NL+SNAVKFT G R+ + V Sbjct: 482 AIVMSKAKEKDLQLQIRFSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVT 541 Query: 395 WTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + Y +I D G GI + + ++ F Q ++ G GLGL I+ ++ Sbjct: 542 EIDEQRCSIYFAIVDTGIGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELM 601 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GG I S+ +G + Sbjct: 602 GGNIEIDSEKGKGSRFFFTI 621 >gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] Length = 917 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 98/402 (24%), Positives = 173/402 (43%), Gaps = 20/402 (4%) Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 Y + + + D+ E W+ V G+ + G + + + Sbjct: 125 YLLPVFGRHRNLAGDVIPDEADRLLGWVEVELSHNGM-------LLRGYRSLFASLLLVA 177 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG--MLATALSFF 200 L+ +++ + + A V L + + S + + Sbjct: 178 LGLICTAALALRISRTI-NAPIGQIKQAVAQLKDGNLETRLPPLGSQELDQLASGINRMA 236 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + I + + +E+ D RK A E + KS FLA+MSHE+ Sbjct: 237 ETLQNAQEELQHSIEQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEI 296 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN ILGF+ +++ + P +Y+G I +S +LL +INEILD S+IEAG+ Sbjct: 297 RTPLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLV 352 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNA 379 L +L D++++ + +L A K +E+ + S+ D ++Q++ NL+SNA Sbjct: 353 LDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLISNA 412 Query: 380 VKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KFT G V + IS++D G G++ ++ + +F Q ++ Sbjct: 413 IKFTREGTIVARAMIEDEQEDNVQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPG 472 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476 G GLGL I++ ++ GG+ + S EG E LP TR Sbjct: 473 GTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 514 >gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas chlororaphis] gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis] Length = 917 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 22/373 (5%) Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169 L W L L + G + + +A L L+AL + N L Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLMLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L T+ + LA + L S + + + I E Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + ISI Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 E LP TR Sbjct: 502 SEFWISLRLPKTR 514 >gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 929 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 130/266 (48%), Gaps = 13/266 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I T ++ Sbjct: 502 ITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAEST----DD 557 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y + + + LL LINEILDLS+IEAG E + + + L + E L+ R Sbjct: 558 EERKNYYDIVEANNERLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRC- 616 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 +E+ + + D+ + QV+ NL+ NA KFT G V+ G G Sbjct: 617 PMGVELVYEASDEDIVIEGDKNRIFQVVSNLIGNAFKFTTNGS---VSYGYRRKGSEIEF 673 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I ++I+ GG + S++ Sbjct: 674 HVSDTGIGIEADKLSKVFERFVKV----NNFAQGTGLGLSICKTIIERLGGTISVSSEMG 729 Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489 +G + LP + E+ Sbjct: 730 KGTTFLFTLPLSESKKETAAKQKETA 755 >gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1001 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 90/434 (20%), Positives = 167/434 (38%), Gaps = 25/434 (5%) Query: 49 SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI 108 + + + + + + + ++ I Sbjct: 331 AGFRAALIATFSWRSLFDDVAARLGIAIGLAVLAIGTVWFAIVMFDRRALRPVNRR--TI 388 Query: 109 WLLVGQIAIGLCW--TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 L+ + L+ + + ++A A + A S Sbjct: 389 RLIESEALNRTLIRTAPAGLMLLSLANGDTMVRNEAAQAFDATGTEPSLGKRIWQAYHGS 448 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 ++ + A Y+ H+ ++ + + I Sbjct: 449 IVG-----------GRTPRVVTHELPVGLAGDGTAYLAAHIVRTRYRGVDVLLCTLTDIT 497 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + E R+ AE+ N AKS FLA+MSHE+RTPLNAI+G E++E + Sbjct: 498 AHKQMEGMLREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPL----PAE 553 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + + S LL +IN++LDLS++E+ + L L ++R+ + + A + Sbjct: 554 ERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIFRPLAAAR 613 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQ 401 ++ + +IDP L+ D +RQ++ NL+SNA+KFT G V + T G Sbjct: 614 HLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTER-GSVTIEARPTGAVGQAHGV 672 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GIA +PT+ + Q +I G GLGLP+ + + G + ++ Sbjct: 673 EVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVETR 732 Query: 462 LREGVEVIAILPNT 475 EG I LP Sbjct: 733 PGEGATFIVSLPLR 746 >gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1 str. Okra] gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 569 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI+I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-IPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 916 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta SOWgp] gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta SOWgp] gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides posadasii str. Silveira] Length = 1285 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 684 EMDELKRKINKMVSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 743 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 744 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTV 800 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 801 FNALKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 859 Query: 392 TVG-------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 860 TISKSTRELCQDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSI 919 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 920 SKRLVNLMGGDVWVTSEFGHGSTFHFT 946 >gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 720 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 128/249 (51%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + + +AEE N KS FLA++SHE+RTPLNAI+GFS ++ G + Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI I + LL LI+++LDLS+IEAG E + I + + E +LR + Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRLRNK 588 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + I I + V AD + QV++NL++NAVKFT G + + Sbjct: 589 KSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + +F + S QG GLGL I ++I+ GG+ S+L + Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 465 GVEVIAILP 473 G LP Sbjct: 704 GSTFWFTLP 712 >gi|312885615|ref|ZP_07745251.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301927|gb|EFQ78960.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 783 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 103/453 (22%), Positives = 174/453 (38%), Gaps = 30/453 (6%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPI------FPMWSLITLAVYAANLSLGKKVMNSD 97 S R I L + G +F I + + VY+ + Sbjct: 191 SRRRSEAIDLLLTGCLFMGGLFFLGLYIFGNRDKAILLFSLYSIVYSYRIIGVNNYELHT 250 Query: 98 IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK--SATLLIALSISALS 155 I + I L + G+ L + +Y S L + + + L Sbjct: 251 ILPDISWYVTIRLEYISLFAGIGLFGLYTLYLYPRDIYKPIVYVIGSICFLFSAASAVLP 310 Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-------------ISLAGMLATALSFFTY 202 + V L + + SL + + +L + Sbjct: 311 PLYFTQLINPFLIVTVFCLVFIPYVYIKAYRNKRPGSGYALASSFSLMVVFSISLFHYWA 370 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I L N LI V+ + R +AE+ AKS FL++MSHE+RT Sbjct: 371 IIGPLQLLNFAGYVSFFFLQSLILSHRVSFA-LKRARAQAEQGLKAKSEFLSTMSHEIRT 429 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN+++G S ++ E++ + S +LL ++N+ILD ++IEAG+ Sbjct: 430 PLNSVIGMSHLLLKT----NPRPDQVEHLDVMLFSANNLLAIVNDILDYNKIEAGKIVFE 485 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + + + I + LQ A +K I + ++D +L+ V D + QVI NL+ NA+K Sbjct: 486 HTEMDIASIAGNIVAGLQNSANDKGIGLKLQVDSALNNKVIGDPTRLFQVISNLVHNAIK 545 Query: 382 FTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT GG V +TV + +S +KD G GI++ + + F Q + G Sbjct: 546 FTQAGGVEVGITVKGQTEHDVTLSIWVKDTGIGISKDKQKLIFERFTQADSSTSRGFGGT 605 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ I+ + S+ +G I Sbjct: 606 GLGLAISKRILELQNSTLQLESEEGKGSTFYFI 638 >gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] Length = 1008 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 16/335 (4%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++ + + + + P + + + + S + ++F Y + Sbjct: 213 IVVTADNVPAPNISPPGILGALLERQLEPVITPVYSGAEDSEYTFNFRFSPSAYF-YEAH 271 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTP 263 + + I+ I L++ + L D+ RK A N KS FLA+MSHE+RTP Sbjct: 272 RSGITRLFIVLVLVIGGMFIYLLKMRRVLHDQVKARKLALSSNQIKSDFLATMSHEIRTP 331 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG +E+I + ++ + Y I SG L +I++ILD S+IEAGR EL Sbjct: 332 MNGVLGMAELI----LSAKPSKKIESYAETILSSGNSLQRIIDDILDFSKIEAGRMELER 387 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 ++++++ E + +RAQ+K +EI DP + S V+ D RQV+ N +SNA+KF Sbjct: 388 VDCNVVELIDETGQLFAMRAQDKGVEISIFSDPDMPSNVFLDPVRFRQVLDNFVSNAIKF 447 Query: 383 TAIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 T G + V V + + D G GI+E + F Q + Sbjct: 448 TNT-GSIQVKVFEIPDESLDEDGIRFRVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKF 506 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I QSI+ G+ + S EG Sbjct: 507 GGTGLGLSICQSIIELANGKIGVDSVEGEGSTFWF 541 >gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 720 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + + +AEE N KS FLA++SHE+RTPLNAI+GFS ++ G + Sbjct: 471 VTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--S 528 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI I + LL LI+++LDLS+IEAG E + + + + E +LR + Sbjct: 529 EEKQEYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNK 588 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + I I + V AD + QV++NL++NAVKFT G + + Sbjct: 589 KSGICICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGE-GSIEFGFDVREDGFLHFY 647 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + +F + S QG GLGL I ++I+ GG+ S+L + Sbjct: 648 VTDTGCGIPEERLEEIFGNFVKL----NSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 465 GVEVIAILP 473 G LP Sbjct: 704 GSTFWFTLP 712 >gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] Length = 991 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 15/269 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 606 IITERKKMEQELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK 665 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY+ I + LL LI++ILDLS+IEAG +L S + + D++RE QL+ Sbjct: 666 ----QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKL 721 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N+++ ++ + Q+I+N ++NA+KFT+ G + Y Sbjct: 722 KSDNVKLEFVAPEEPCFANIEKNRLSQLIINFVTNAIKFTSQ-GSIRFGYERQ-NNELYF 779 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + ++ ++ F + S QG GLGL I ++++ + GG+ + S+ Sbjct: 780 YVTDTGCGIPQDKLDSIFGRFVKL----NSFAQGTGLGLSICRTLINHMGGKIGVESEEG 835 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYK 492 +G LP ++ E ++ Q K Sbjct: 836 KGSTFWFTLPYKQI-----EAIEKAPQKK 859 >gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1045 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GLISFGYKLRDDNTLWFY 833 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGK 889 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP P + + Sbjct: 890 GSRFWFTLPFQPKKELFPSEEQK 912 >gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 912 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 8/273 (2%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + D+L A++ + + + EE AKS F+A MSHE+RTP+NA++G S++ Sbjct: 157 LKQINDNLDAKVRERTAALELAKAELEEALEAKSSFVARMSHEIRTPINAVIGLSDLALN 216 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N++ ++Y+ I SG LL+L+N +LD S+IEAG+ S ++R + Sbjct: 217 TS---PNHKEQQDYLQKIRDSGDILLSLVNNVLDFSKIEAGKLTAESVCFSTEKLIRTTV 273 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 M A K +E+ I + + D ++Q+++NL+SNA+KFT G + + Sbjct: 274 NMNVFGAYAKKLELVTDIADDIPEYLLGDPLRIQQILVNLVSNAIKFTESGSIVIRLRCN 333 Query: 395 WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G + + D+G GI+ ++ + F Q ++ G GLGL I + + Sbjct: 334 KLDGENILLQCEVSDSGIGISSTQLEQLFCPFTQADNSVTRVYGGTGLGLTITRQLCELM 393 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G+ + S + +G +LP +V P++ Sbjct: 394 NGEIKVESDVGKGSTFTVLLPL-KVPTLQPKNA 425 >gi|167746930|ref|ZP_02419057.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662] gi|167653890|gb|EDR98019.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662] Length = 812 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E E K+ + + A N AK+ FL+SMSH++RTP+NAI+G + + + P + Sbjct: 279 EEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---D 335 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I+ S +HLL+LINE+LD+S+IE+G+ +S ISL D++ + M Sbjct: 336 KIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLING 395 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398 K+ + I + V AD +RQV++NL+SNAVK+T GG + + + Sbjct: 396 KHQQFQMSIGHVNHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKS 455 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++I I D G GI+E +P + F + + S QG GLG+ I ++I+ G + Sbjct: 456 QYEFICI-DTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTISV 514 Query: 459 RSKLREGVEVIAILPNT 475 SK+ G + +P Sbjct: 515 ESKIGTGSKFTVSVPLE 531 >gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31] gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31] Length = 698 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 15/315 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL---IAELEVAKSLS 235 + L + A + + L + +L A + A + Sbjct: 252 WLVWDPKQPGLEVVRQIAPLVLPGVLLLMVAGLALALRVRQVLRELHASEAGQKAAMADV 311 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E R RAE +LAKS+FLA+MSHE+RTPLN +LG ++V+E +G ++E++ I Sbjct: 312 VEARDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGSP----HREHLKIIR 367 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+ LL ++N++LDLS+IEAGR+EL + L + + L A++K++ + I Sbjct: 368 DSGETLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIA 427 Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 P W D +RQV+ NL SNAVKFT G++ +TVG TS ++ D G GIA Sbjct: 428 PDALGAWCGDSVRLRQVLSNLASNAVKFTHE-GQIRLTVGATSEG-LTFTLTDTGIGIAP 485 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I ++ F Q + G GLGL I++ ++ GG + S +G + LP Sbjct: 486 DRIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLPF 545 Query: 475 TRV-----LNFIPED 484 RV L PE+ Sbjct: 546 ERVGAVDYLAPAPEE 560 >gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1784 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I R+ Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL++IN+ILD S+IEAG+ ++ L ++ + M +A K IE+ + P+ Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV++NL++NA+KFT G V +++ + S++D+G G+ Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I + ++ GG+ + S+ G Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265 >gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 11/268 (4%) Query: 219 AEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + DD E ++ E + AE N K FLA +SHELRTPLN ILG+S++++ Sbjct: 593 TDIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLK 652 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 G L+ + E + I R+ + ++LI+++LD+SRI G+ L+ + ++L DI+ Sbjct: 653 T---GKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGKLTLNVTTVNLADIISAA 709 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + L A K I + I+P++ V D ++Q++ NLLSNA+KFT GG V V + Sbjct: 710 LETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSNAIKFTPQGGEVVVQLEQ 769 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G +I + D G GI +P + F Q + G+GLGL I + ++ HGG Sbjct: 770 I-GSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGLGLGLAIVRHLVELHGGT 828 Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIP 482 S +G + ILP ++ +P Sbjct: 829 VEADSPGEGQGTTLKVILPL---ISSLP 853 >gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1093 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 143/277 (51%), Gaps = 7/277 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I E+ + E E R+ AE N K FLA +SHELR+PLN ILG Sbjct: 678 TVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPILG 737 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++++ + + T ++ + I R+ + LI ++LD+SRI G+ L+ +++SL+ Sbjct: 738 WAQMLKNYEL---DQPTTQKALCIIERNARLQAELIEDLLDVSRILRGKLNLNTTSVSLV 794 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + ++L AQ K+IE+ +++ + V D ++QV+ NLLSNAVKFT GG+V Sbjct: 795 VVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQV 854 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + G I +KD G GI +P + F Q + G+GLGL IA+ ++ Sbjct: 855 EIELEQIHGG-VEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLV 913 Query: 450 ANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDN 485 HGG+ S +G I LP + P D Sbjct: 914 ELHGGKIWAESLGENQGATFIVNLPL--LPQEFPNDT 948 >gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] Length = 1177 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 14/312 (4%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 ++ I+ G L L +T ++ + +L E L + AK+ A Sbjct: 456 IVPIASGGDLLGVLFLYTDPNPTRSEARMVMLRQVGEMLALAILEDRAKASLKAAHDAAV 515 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AKS FLA+MSHE+RTP+N +LG E+++ M + + + S + LL Sbjct: 516 DAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDM----SREQWDLVETASNSAESLLE 571 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362 +IN ILD S++EAG+ E+ + +L D+V E +L RA +K +E+ + L +W Sbjct: 572 IINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWI 631 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIP 418 D +RQ++ NLL N+VKFT G V V V + I+D G GIA Sbjct: 632 GDPTRIRQILTNLLGNSVKFTER-GEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQA 690 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV- 477 + F Q + G GLGL I ++++ GG + S G LP + Sbjct: 691 RLFQPFTQADGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLEPLP 750 Query: 478 ---LNFIPEDNH 486 +P+ +H Sbjct: 751 GASAPALPDFSH 762 >gi|319427233|gb|ADV55307.1| hybrid periplasmic sensor histidine kinase, BarA [Shewanella putrefaciens 200] Length = 933 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + +L+ + ++ L F L V P+ + A + LD L G L Sbjct: 180 HRAAVAAFIMVLLGVQLNLLFTFRLVKNV---TQPITEMVRVVAKIREGKLDARLDGNLI 236 Query: 195 TALSFFTYITYHLF--------KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + I ++ + + ++E+ D +KRA E + Sbjct: 237 GELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEAS 296 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + +YI I RS +LL +IN Sbjct: 297 RIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHS----SQVDYINTIERSATNLLAIIN 352 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S++EAG+ L L + + + + ++ AQ K +E+ I P++ V D Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPNVPDHVNGDA 412 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + Q+I NL+ NA+KFT G V + + S + + D G GI E + + Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGIDESQQDFLFQ 472 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +FGQ +I G GLGL I + ++ GGQ S + +G LP Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPL 524 >gi|315051696|ref|XP_003175222.1| signal transduction histidine-protein kinase barA [Arthroderma gypseum CBS 118893] gi|311340537|gb|EFQ99739.1| signal transduction histidine-protein kinase barA [Arthroderma gypseum CBS 118893] Length = 1321 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 22/298 (7%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +I+ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKKKINKMISNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 870 KHEPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GLGL I++ ++ GG + S+ G + + YK ++ Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFTCVVKKADQSLDVIASSLVPYKGHS 987 >gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] Length = 907 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 9/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E K+ +++AEE K +FLA+MSHE+RTPLN I+GF++++ + Sbjct: 382 ITKREEIKNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKILLRD----NAT 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + I S LL ++N+ILDLS+IEAG+ L ++ + L ++V + +LR Sbjct: 438 KKQRHQLNAIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRIG 497 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK + + D ++ + D + Q++LNL+ NA+KFTA+GG ++V + Sbjct: 498 EKEQTLNTRFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENKV 557 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G GI +I + F Q S G GLGL I + ++ G ++ Sbjct: 558 NVEISVSDTGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISVK 617 Query: 460 SKLREGVEVIAILPN 474 S+ G +P Sbjct: 618 SQESIGSTFTLTIPL 632 >gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 902 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 10/231 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTPLN I+G + + + + +E + ++ + LL +I Sbjct: 412 NRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTEL----TDEQRENLNIVNSCAELLLRVI 467 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEAG+ L +++ + ++A EK + + + + + D Sbjct: 468 NDILDYSKIEAGKMTLENVKFDFFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGD 527 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++QV+ NL+SNAVKFT I G V + V ++ D G GI ++ + Sbjct: 528 PGRLQQVLNNLISNAVKFTDI-GEVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNML 586 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 SF Q +I G GLGL I++ ++ GG+ + S+ +G Sbjct: 587 FKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWVESQKGKGSTFYFT 637 >gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 902 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 10/231 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTPLN I+G + + + + +E + ++ + LL +I Sbjct: 412 NRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTEL----TDEQRENLNIVNSCAELLLRVI 467 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEAG+ L +++ + ++A EK + + + + + D Sbjct: 468 NDILDYSKIEAGKMTLENVKFDFFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGD 527 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++QV+ NL+SNAVKFT I G V + V ++ D G GI ++ + Sbjct: 528 PGRLQQVLNNLISNAVKFTDI-GEVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNML 586 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 SF Q +I G GLGL I++ ++ GG+ + S+ +G Sbjct: 587 FKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWVESQKGKGSTFYFT 637 >gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88] Length = 1288 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934 >gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 661 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 13/260 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D I E E+ ++L ++ AE + AKS FLASMSHE+RTPL ILG +++++ +G Sbjct: 146 RDTIREREIQRNLLS-AKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLGA 204 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++Y+ +G++LL+LIN ILDLS+IEAG+ E+ L ++R+ ++ L Sbjct: 205 ----EQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMAL 260 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-VGWTSGR 399 RA +K +E ++ V D +RQ+++NL+ NA+KFT G+V V V W + Sbjct: 261 RAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTER-GKVTVEAVRWPAEE 319 Query: 400 GQY-----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + D G GI + V F Q + G GLGL I++ ++ GG Sbjct: 320 SAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGG 379 Query: 455 QFLIRSKLREGVEVIAILPN 474 + S+ EG +P Sbjct: 380 TIRLASREGEGSRFTVEIPL 399 >gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 948 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 123/254 (48%), Gaps = 7/254 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + +LE DE R+ AE AKS FLA MSHE+RTP+N +LG ++ + Sbjct: 390 EKYAQDLEFNNWALDEAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTEL-- 447 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + ++ S + LL LIN+ILD S+IE+G+ L +L + E I L + Sbjct: 448 --DQDQQHHLEIAQGSAKSLLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAI 505 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSG 398 RAQEK++E+ I + + D + QV+ NL+ NA+KFT G + + Sbjct: 506 RAQEKSLELTLDISQIKPANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKLTAKNNN 565 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 SI+D G G+ + ++ + +F Q + G GLGL IA+ + G + Sbjct: 566 HRLTFSIQDTGIGMKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISV 625 Query: 459 RSKLREGVEVIAIL 472 SK G + L Sbjct: 626 TSKENIGSHFVVDL 639 >gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1003 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 14/273 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + R AEE + AKSRFLA+MSHELRTPL I+G++++I L T Sbjct: 459 HNITERKQTEEALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYADLITLATQQGE 518 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N ++ I + +G+HLL +IN++LDLS+IEAGR E+ + S+ + E + + L Sbjct: 519 FN-RIRDDITRVRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVASMDLL 577 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 AQ + + IDP++ + +D+ +RQV+ NL+ NA KFT G V VT+ ++ Sbjct: 578 AQTRRNTLILTIDPTVGVMHSDDVRVRQVLYNLVHNACKFT-EDGVVTVTIARSALESTV 636 Query: 398 -----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 +I D G G+ + ++ + F Q G GLGL +++ ++ Sbjct: 637 HVNGHSARIVFTISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHLVRML 696 Query: 453 GGQFLIRSKLREGVEVIAILP--NTRVLNFIPE 483 GG + SK G + LP +V PE Sbjct: 697 GGDITVTSKPGVGTTFVVTLPENPAQVAEPAPE 729 >gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 684 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 105/438 (23%), Positives = 181/438 (41%), Gaps = 17/438 (3%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R I+ + + +L K ++G Sbjct: 1 MRADGIMVAMNGFLCLVCFALAPLRNTGAAALAIGVPTLLISLWLK--HRHSGELGTRLY 58 Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 ++ I +T + + +Y I + + Sbjct: 59 MACGFMIYTALIIHQNGGVTEAHFSAFGLIGVLLYYRDWRTILTATVFIYLHHFVLGYGQ 118 Query: 166 SF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + +P+ V + + + ++ +++ +++ + + +L Sbjct: 119 TLGWPIYVFADSHFWRMFVSHVLYFLPFVGMMSYLSIWLRREGYENQQDLIALRQAEQEL 178 Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 EV + +E + A+ N AKS FLA+MSHELRTPLN ILG+++++ Sbjct: 179 TQFNEVLEKRVEERTFELQAAKLEADRANQAKSEFLANMSHELRTPLNGILGYAQILSR- 237 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + K +G I SG HLL+LIN++LDL++IEAG+ EL + SL +++ + Sbjct: 238 --SKTLSAEDKNGVGVILDSGSHLLSLINDVLDLAKIEAGKLELFPTTTSLPSLLQRVVD 295 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVG 394 + Q++A +K ++ K + ADEK + QV++NL+ NA+KFT G ++ V G Sbjct: 296 ICQIKATQKGLQFLYKPSQLPEGILADEKLLSQVLINLIGNAIKFTDAGTVTFQIEVHKG 355 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + D G GIAE +I + +F Q K +G GLGL I+Q I+ GG Sbjct: 356 SDGQVSLMFKVIDTGRGIAEEDIDKLFEAFEQVGDHHK-QSEGTGLGLAISQRIVQLMGG 414 Query: 455 QFLIRSKLREGVEVIAIL 472 I SK +G E IL Sbjct: 415 TIHINSKPGDGSEFWFIL 432 >gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator [Pseudomonas fluorescens Pf0-1] Length = 633 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 154/332 (46%), Gaps = 15/332 (4%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILS 216 A+F F V+A +S + DI A + T + L + I + Sbjct: 172 LALFALLFTFVLARRLAGSLSQPIRDIGNAVKAIQDGDYKTPLPIVDDTELGALSQHINN 231 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + E A + +TR+ AE+ N AKS FLA MSHELRTP+N +LG +++E Sbjct: 232 LAQALEQASREQHQAMAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLET 291 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 M E EY S +HLL +IN+ILD SRIE EL +L +++ C Sbjct: 292 TDM----TEEQVEYAALASESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACA 347 Query: 337 IMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 Q A ++ + + +I L V D +RQ+++NL+ NA+KFT GRV + Sbjct: 348 QSFQHSAAQRGLALQLRIPEDLRDLQVQGDPTRIRQILVNLVGNALKFTEQ-GRVSIEAQ 406 Query: 395 WTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 W S + + +++D+G GI+ + + +F Q +I G GLGLPIA+++ Sbjct: 407 WQSLDHELLWFTCAVRDSGIGISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAE 466 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GG +S+ G +P +P Sbjct: 467 RMGGTLRAQSEEGRGSVFTLEIPLALYKQALP 498 >gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 955 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 7/286 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I E+ + E E R+ AE N K FLA +SHELR+PLN ILG Sbjct: 542 TVQAICRDITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILG 601 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++++ T+ P T+++ + I R+ Q LI ++LD+SRI G+ L +++L Sbjct: 602 WAKLLNTHTLEP---ATHQKALSIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLG 658 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 I+ I ++L AQ KNI+I K+DP++ V D ++Q++ NLLSNAVKFT GG+V Sbjct: 659 FIIDSAIETIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKV 718 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + G I + D G GI +P + F Q G+GLGL IA+ ++ Sbjct: 719 EIELNSL-GNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLV 777 Query: 450 ANHGGQFLIRS-KLREGVEVIAILPN--TRVLNFIPEDNHESTQYK 492 HGG S +G I LP V + S +K Sbjct: 778 ELHGGTIKAESLGEGQGATFIVKLPLIPETVQSQKQSSVSPSKTHK 823 >gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 2198 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 96/398 (24%), Positives = 167/398 (41%), Gaps = 25/398 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ +LT + T IA+ ++ ++ M + Sbjct: 1378 LNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQ 1437 Query: 167 FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L TQ A L T+ L ++N ++ Sbjct: 1438 SQSLAEELQTQQNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQTNAELEEKAELLAMQ 1497 Query: 225 IAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ R +AE+ + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1498 KKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADN 1557 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L + EY I+ +G LL LIN+ILDL++IE+G + + + L+++ + Sbjct: 1558 IDNNLTTKQV-EYSQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQIER 1616 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + AQ K + + P L + ++ D K ++QV+ NLLSNA KFT G V + + Sbjct: 1617 TFRQVAQSKGLAFTIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQ-GEVRLQIAVA 1675 Query: 397 SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 S+ D G GIA + + +F Q + G GLGL Sbjct: 1676 KQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLS 1735 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I++ I GG+ + S+ +G P V Sbjct: 1736 ISREIARLFGGEIKLTSQPGQGSTFTFFFPQLNVEPTS 1773 >gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 762 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 104/456 (22%), Positives = 184/456 (40%), Gaps = 21/456 (4%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99 + + + ++++A + + L T A ++ ++ Sbjct: 38 QQLAGREGLPLVTFFAIVVLAGLAHLTGAPIFISLALLATGLAGLAMHLHARRSVHRTAV 97 Query: 100 IGEVYVWRIWLLVGQIAIGLCW----------TLLTLVEPGTWTPEYLTIYKSATLLIAL 149 + + R + +A + W L+ + + A + A Sbjct: 98 LLDETSARSRAEIETLADRM-WEMQESEERFRGLIDALGDLVIHRDRDGYIVYANKVFAD 156 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + L V + A L + + + + + Sbjct: 157 LVET-DQRDLAGKTLAELGIEVGIVPDAAFSDHECLSSTDVAIRTPSGPRWFSWIELSVR 215 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I + A+S R+RAE + AKSRFLA++SHE+RTP+N I+G Sbjct: 216 DKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMG 275 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + ++ ++ P + Y+G I S LL LI ++LD S+IEAGR++ IS+ Sbjct: 276 MARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVR 331 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +I I +L RA K+I + ++P + + AD +RQV+LNL+ NA+KFT GG Sbjct: 332 EIADNIIELLAARAFAKDIGLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFTDGGG- 390 Query: 389 VHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V V+V +I D GPG+ + ++ + F Q G GLGL I+ Sbjct: 391 VLVSVARARTATTDRICFTIADTGPGLRDEDMERIFEEFEQADGTSTRTHGGAGLGLAIS 450 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + ++A GG + S+L +G E + +P T Sbjct: 451 KRLVAAMGGTISVSSRLGQGSEFVFEIPATAATEAP 486 >gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 569 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI+I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-VPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 1314 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTPLN ++G E++ T+ +E Y+ S LL LI Sbjct: 597 SQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTL----DERQNRYVHIARSSAGTLLGLI 652 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N++LD S+IEAG+ EL L ++ + M RA EK +E+ +I P + + V+ D Sbjct: 653 NDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGD 712 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTV 420 + +RQV++NL++NA+KFT G V + IS+ D G GI + Sbjct: 713 PERIRQVLINLVNNAIKFTKQ-GEVILRAEQQVHSSGVSRMRISVIDTGIGIPADRSSQL 771 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F Q + G GLGL I + ++ GG+ + S G +P Sbjct: 772 FAPFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVPLE 826 >gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1041 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 9/261 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I++ + + E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 656 IISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVL--- 712 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E +EY I + LL LIN+ILDLS+IEAG E S + + ++ + + R Sbjct: 713 -EEKQEYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRV 771 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +N+ + + V + + QVI+NLL+NA+KFT G + + + Sbjct: 772 VNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQ-GSISYGYSCLNKKMLRF 830 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI+ + + F + S QG GLGL I + I+ + GG+ + S++ Sbjct: 831 YVSDTGRGISVEQQEAIFDRFVKLD----SFAQGTGLGLSICRMIVDHLGGEMGVESEIG 886 Query: 464 EGVEVIAILPNTRVLNFIPED 484 +G P + ED Sbjct: 887 KGSTFWFTFPYKAPEKPVRED 907 >gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1] gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1] Length = 1288 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 675 ELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 734 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 735 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKANEKFLSLAYQVDSSVPDFVTGDPFRLRQIILNLVGNAIKFT-EHGEVKLTIS 850 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S+ D G GI E ++ + +F Q + G GLGL I++ Sbjct: 851 KSDREECKDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ G Sbjct: 911 LVNLMGGDVWVTSEYGLGSSFHFT 934 >gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1041 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 9/261 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I++ + + E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 656 IISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVL--- 712 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E +EY I + LL LIN+ILDLS+IEAG E S + + ++ + + R Sbjct: 713 -EEKQEYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRV 771 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +N+ + + V + + QVI+NLL+NA+KFT G + + + Sbjct: 772 VNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQ-GSISYGYSCLNKKMLRF 830 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI+ + + F + S QG GLGL I + I+ + GG+ + S++ Sbjct: 831 YVSDTGRGISVEQQEAIFDRFVKLD----SFAQGTGLGLSICRMIVDHLGGEMGVESEIG 886 Query: 464 EGVEVIAILPNTRVLNFIPED 484 +G P + ED Sbjct: 887 KGSTFWFTFPYKAPEKPVRED 907 >gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 919 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 174/382 (45%), Gaps = 20/382 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L W + L G Y ++ S L++A L +S L + + + A Sbjct: 150 LGWVEIELSHDGMLLRGYRNLFTSMLLILACLVLSGLLAMRMSRTINDPIARIKHA--VN 207 Query: 178 AIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNVKIL----SCQAEKDDLIAELEV 230 + H+ + A L + L ++ ++ + + +E+ Sbjct: 208 QLKDGHLEERLPAMGSHELDELARGINRMAETLHSAHEELQHSIDQATEDVRQNLETIEI 267 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y Sbjct: 268 QNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDY 323 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +S +LL +INEILD S+IEAG+ L +L D+V++ + +L A K +E+ Sbjct: 324 LSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLVQDTLTILAPAAHAKQLEL 383 Query: 351 -FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405 + SS+ D ++Q++ NL+SNA+KFT G + V + IS+ Sbjct: 384 LSLIYRDTPSSLVGDPLRLKQILTNLVSNAIKFTRE-GTIVVRAMLEDEQQDNAQLRISV 442 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ T+ +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 443 QDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 502 Query: 466 VEVIAILPNTRVLNFIPEDNHE 487 + L + + + + Sbjct: 503 SQFWISLSLPKAHDDSEAQSSQ 524 >gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 444 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 5/295 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLAK 249 LA L I ++ + + + LI ELE + + E + K Sbjct: 115 LAQVLRSAIRIYRAEMQAALAEEQLRESHEKLIRKNQELERQQEQIQMQNFKLLEASRLK 174 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTP+NAI+GFS+++ G L+N + + I +G+HLL L+NE+L Sbjct: 175 SHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSN-QQADMVERILNNGKHLLMLLNEVL 233 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D S++E GR +L + ++ + ++ A K + + + D ++ D +R Sbjct: 234 DFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAKKLSLLVQNDLQNPFIFNDPVRIR 293 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G + V V I ++D G GIA + + +F Q Sbjct: 294 QILTNLLSNAIKFT-ESGEIWVEVKELPTNQVAIIVRDTGIGIASRDFKRIFEAFRQVDQ 352 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I G GLGL I S++ GG+ + SKL G LP L + +D Sbjct: 353 TITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIGSMFKIELPRQITLQNVVDD 407 >gi|317471741|ref|ZP_07931081.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900764|gb|EFV22738.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 799 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E E K+ + + A N AK+ FL+SMSH++RTP+NAI+G + + + P + Sbjct: 266 EEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---D 322 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I+ S +HLL+LINE+LD+S+IE+G+ +S ISL D++ + M Sbjct: 323 KIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLING 382 Query: 346 KNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398 K+ + I + V AD +RQV++NL+SNAVK+T GG + + + Sbjct: 383 KHQQFQMSIGHINHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKS 442 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++I I D G GI+E +P + F + + S QG GLG+ I ++I+ G + Sbjct: 443 QYEFICI-DTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTIGV 501 Query: 459 RSKLREGVEVIAILPNT 475 SK+ G + +P Sbjct: 502 ESKIGTGSKFTVSVPLE 518 >gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 907 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 3/265 (1%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 N K+ E D ELE K +E K + + KS FLA+MSHELRTPLN+IL Sbjct: 464 NEKLHEQYKESDQKTKELEKIKEDLEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILIL 523 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+++ G L+ + E+ I+ SG+ LL+LIN+ILDLS+IE+G+ E+ + + D Sbjct: 524 SQMLSENANGNLS-KKQIEHAETIYSSGKDLLDLINDILDLSKIESGKVEVYPEELFIED 582 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-R 388 + A++K ++ I S+ + D++ ++Q++ NLLSNA KFTA G R Sbjct: 583 MRAFVERQFHPIAEQKGLQFNCYIHQETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVR 642 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V ++ SI D G GI + +V +F QG G GLGL I++ + Sbjct: 643 FEVHPSYSESTKVVFSIIDTGIGIPPEKQESVFEAFHQGDGTTTREYGGTGLGLSISREL 702 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 GG+ + S+ +G LP Sbjct: 703 ANLLGGRIEVVSEDGKGSTFSLYLP 727 >gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11] gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11] Length = 827 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 10/319 (3%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 L + ++ + L + ++ + D++ + E + ++E R++ Sbjct: 104 GGPLPGGGFVSTYSDITERVAARHQLLRQMEELKEARQATLDMMEKAEANRKRAEELREK 163 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE AK FLA+MSHE+RTP+N ++G +++ + ++ + + S L Sbjct: 164 AESATKAKDMFLAAMSHEIRTPMNGVVGMIDLLTHTDL----DDEQMQMAATVRDSAFAL 219 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L +IN+ILD S+IEAG+ +L +S++D+V + A K ++ DP + Sbjct: 220 LTIINDILDFSKIEAGKMDLEMIPMSILDVVEGVGETMGPNACAKVLDFIAYCDPRIPAE 279 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYIS--IKDNGPGIAEGE 416 V D+ +RQ++ NLL NAVKFT G+V + V + ++D+G G+ + Sbjct: 280 VAGDQVRLRQILFNLLGNAVKFTEA-GQVTLRVDMNEISEGQATVRYQVQDHGIGMTPEQ 338 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q ++ G GLGL I + ++ GG + S +G L + Sbjct: 339 TANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVDMMGGTIDVESVPGDGSTFTVTLTHEI 398 Query: 477 VLNFIPEDNHESTQYKCYA 495 V E H+ K A Sbjct: 399 VEEAGVETGHDLAGVKVLA 417 >gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 651 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A S R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 569 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A+ KNI+I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGEK-VPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1304 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + + A+ + AKS FLA+MSHE+RTPLN ++GFS+++ + N Sbjct: 655 ISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----N 710 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET K+Y+ I+ SG LL++IN+ILD S+IEAG+ EL ++ DI + I ++ +AQ Sbjct: 711 ETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVLYQAQ 770 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K++E+ I+ L S +W DE ++QV++NLL NAVKFT G + + + S Sbjct: 771 RKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFT-EHGEIELKIEKLSSYNDKI 829 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G GI + + + +F Q ++ G GLGL I+ +++ + ++ Sbjct: 830 TLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSKLQLK 889 Query: 460 SKLREGVEVIAIL 472 S+ +G L Sbjct: 890 SEPGKGSIFYFDL 902 >gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] Length = 968 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 11/305 (3%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + L A + T + ++ I + E++D + E E Sbjct: 335 FRTRLVPLLNASRIAGAEGTAYVDGVIGVSMDITELR-EREDQLREQEKENERLLANAAA 393 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A+E + KS+FLA+MSHE+RTP+ ++G SE++ + +E KE +IHRS L Sbjct: 394 AKEASRMKSQFLANMSHEIRTPIAGVIGMSELLSDMNL----DEEQKECAENIHRSANSL 449 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--- 358 L +IN+ILD S++E+GR ++ E SL ++R+ M+ AQ K + I + Sbjct: 450 LTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQD 509 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D +RQ++ N+L+N++KFT+ G V ++ S+ D G GI E Sbjct: 510 LRVMGDPGRLRQILTNVLTNSIKFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEE 569 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q + G GLGL I+++++ GQ + SKL +G +P + Sbjct: 570 VRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIPFS 629 Query: 476 RVLNF 480 R + Sbjct: 630 RAPSQ 634 >gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 918 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 98/440 (22%), Positives = 176/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDESGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP + L D Sbjct: 625 TRFSVDLPLSPALEAGEADE 644 >gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 596 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 8/312 (2%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDL 224 V++ +S++ SL ++ ++ + L + + + + Sbjct: 209 FLRTVLILSGIVFGISLYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTI 268 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L + E ++ E + AKS FLASMSHE+RTPLN ++G ++++ + + Sbjct: 269 LNSLNTTQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----D 324 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ I +G+ LLN++N+ILD S+I+AG+ + ++ L ++VRE + + A Sbjct: 325 AEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEAN 384 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E +I+P + V D +RQ++ NL+ NA+KFT G V +++ Sbjct: 385 TKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTET-GFVILSIK-KEEHSILF 442 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 IKD+G GI+ ++ ++ F Q + G GLGL I++ ++ G+ + S Sbjct: 443 QIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKG 502 Query: 464 EGVEVIAILPNT 475 G P + Sbjct: 503 VGSTFWCSFPLS 514 >gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2] gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2] Length = 941 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 14/305 (4%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A F + + + +L ++ A L+DE A+ + AKS+FL Sbjct: 223 LLAEGFNNMLGQIQQRDEHLEEQVRNRTAELQLTMDKAIVLADE----AQAASKAKSQFL 278 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTP+N +LG +E+ + + I I SG+ LL +IN+ILD S+ Sbjct: 279 ANMSHEIRTPMNGVLGMAEMALDMNLTL----EQQNAIETIKSSGESLLTIINDILDFSK 334 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVI 372 IEAG+ E+ +L ++ E +L RA K +E+ I +L + +D +RQV+ Sbjct: 335 IEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSDPSRIRQVL 394 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 NLLSNA+KFT G V++ V ++D G G+ E + F Q Sbjct: 395 TNLLSNAIKFTEQ-GEVYLKVESLKDMGDSEQVRFLVRDTGIGMTAEERKKLFQPFSQAD 453 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + G GLGL I++ ++ GQ EG E L + + Sbjct: 454 ESTTRKYGGTGLGLAISRQLVELMDGQINCTGNPGEGAEFWFDLTLKKTAGTRILAQTPT 513 Query: 489 TQYKC 493 + K Sbjct: 514 QELKG 518 >gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622] gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 502 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 153/306 (50%), Gaps = 8/306 (2%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 V + + A +L + ++ + + +LE + + R Sbjct: 179 RRVPERTAAQVLVHFGQVLAALVASGQRAFLATQLHIEAMLETHRDLEANNARLAQANIR 238 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 +E + KS FL ++SHELRTPL +I+G+SE++ G LN E Y+ I G+ L Sbjct: 239 LKELDRLKSTFLGTVSHELRTPLASIIGYSEMLAEGLAGALNPEQLL-YVRTIVEKGESL 297 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SS 360 LNLI+ ILDLS+IEAGR L + L +++ + + +AQ K +E+ ++ P Sbjct: 298 LNLISSILDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLPPLPQPR 357 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAE 414 + AD +RQV++NLL+NAVKFT+ GGRV V + + + + + ++D G GI E Sbjct: 358 LAADADKLRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDTGMGIRE 417 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + SF Q + G GLGL I +S++ HGG+ + S+ G +LP Sbjct: 418 DQFENIFQSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSVESEFGRGSRFTVVLPL 477 Query: 475 TRVLNF 480 L+ Sbjct: 478 QPPLSE 483 >gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1205 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 12/256 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+ L+ + + +++AE N KS FLA+MSHE+RTPLN ++GF++++ + Sbjct: 665 ADISALKAMEYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKSPL--- 721 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE ++Y+ I+ S LL+LIN+ILD S+IEAG+ LSE +++ ++ + M++ Sbjct: 722 -NENQQKYMETIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHE 780 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A +KNIE+ I + + AD +RQ+++NLLSNAVKFT G + + V + Sbjct: 781 AYQKNIEVLLNIPQKIDQYIIADGLRLRQILINLLSNAVKFTHD-GEIELKVEEQNSALH 839 Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + S++D G GI+E + + +F QG + G GLGL I+ ++ + Sbjct: 840 PNKKQFTFSLRDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESK 899 Query: 456 FLIRSKLREGVEVIAI 471 +RS L G Sbjct: 900 LEVRSTLGVGTTFYFT 915 >gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 607 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 8/312 (2%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDL 224 V++ +S++ SL ++ ++ + L + + + + Sbjct: 220 FLRTVLILSGIVFGISLYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTI 279 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L + E ++ E + AKS FLASMSHE+RTPLN ++G ++++ + + Sbjct: 280 LNSLNTTQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----D 335 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ I +G+ LLN++N+ILD S+I+AG+ + ++ L ++VRE + + A Sbjct: 336 AEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEAN 395 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E +I+P + V D +RQ++ NL+ NA+KFT G V +++ Sbjct: 396 TKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTET-GFVILSIK-KEEHSILF 453 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 IKD+G GI+ ++ ++ F Q + G GLGL I++ ++ G+ + S Sbjct: 454 QIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKG 513 Query: 464 EGVEVIAILPNT 475 G P + Sbjct: 514 VGSTFWCSFPLS 525 >gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 609 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ F+A++SHELRTPL I ++E +E + + + ++G I ++ Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ L + +++++ + + ++K+I ++ P +S+ Sbjct: 430 RLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D G+ QV+ NL+SNA+K+T GG + + T +S+KD G GI + ++ + Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ HGG ++S+L +G V LP Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601 >gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 743 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 158/364 (43%), Gaps = 29/364 (7%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + + + F + ++ A++ + + L + + + + Sbjct: 108 LRLVVANRAYLSFFHGEVAITAGVTYDAVLKIVAKHEMVDMAGRDPLDWHHEMIARIRRE 167 Query: 211 NVKILSCQAEKDDLIAELEV-------------------AKSLSDETRKRAEEENLAKSR 251 +++ + + I ++ + +E R +AE N AKS Sbjct: 168 HIEPIVLRTRNGHHIKLIDRWGEDGDLVCLAQDITHIIEREQELEEARNKAEAANRAKSA 227 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N ++G +E++ + NE + Y+ I SG+ LL +IN++LD Sbjct: 228 FLANMSHEIRTPMNGVVGMAELLGETEL----NEEQQLYVETIRSSGEALLTIINDVLDY 283 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEA R +L L + E +++LQ A++K +++ D L AD MRQ Sbjct: 284 SKIEAERLKLYPEVFDLERCLHEIMVLLQPSAKDKGVKLLVDYDLFLPTRFIADPGRMRQ 343 Query: 371 VILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NLL NAVKFT G + V + +++++D G GI+ + V F Q Sbjct: 344 ILTNLLGNAVKFTHTGHVLARVVGFERDAEHYELHVTVEDTGIGISPDNLDHVFGEFNQV 403 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDN 485 +G GLGL I + ++ GG + S+L EG LP + + Sbjct: 404 EATSNRRFEGTGLGLAITRQLVHLMGGSVWVDSQLGEGSCFGFRVTLPRAEPVAPLDRPT 463 Query: 486 HEST 489 T Sbjct: 464 PPVT 467 >gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 663 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 22/291 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------EN 246 L S + L+ + L+ L A + ++ E+ + Sbjct: 371 KALLSSIAEQLAIAINQSQLMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAAS 430 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 ++ FLA++SHEL TPL ++G S + +G L +EY+ IH SG+ LL++IN Sbjct: 431 RIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELT-PRQREYLQTIHDSGERLLDMIN 489 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWAD 364 +ILDLS+I+AG+ L+ SL + + L ++ + + + P AD Sbjct: 490 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 549 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q+I NLL+NA+KFT GG V + W ++D G GI E ++P V F Sbjct: 550 PGRIEQIIWNLLTNAIKFTPQGGNVTLRF-WVEDNTVIFQVEDTGIGIPEEKLPLVFEKF 608 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + +G G+GL + + I+ H G+ + S + G +P++ Sbjct: 609 QQVDASYHRPYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIPSS 659 >gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 883 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 20/298 (6%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + ++ + K + +L + + + E+R +AE N AKS Sbjct: 328 LWGLLAAYQLNVPRQWHKVELYLLKQAGAQLGVALQQAELLKQVRESRDKAEAANKAKSA 387 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLNAILGFS+++ + L K+ + I+RSG HLL+LIN++LD+ Sbjct: 388 FLANMSHELRTPLNAILGFSQLLARDENLTL---EQKQTLNTINRSGSHLLSLINDVLDM 444 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEAG+ L+ L+ ++ M L+A+ K + + + L + DE +RQ Sbjct: 445 SKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVLNIQKSSQLPSHIRVDESRLRQ 504 Query: 371 VILNLLSNAVKFTAIGGRVHVTV--------------GWTSGRGQYISIKDNGPGIAEGE 416 V++NLL+NA+KFT + G V + V ++D G GIA E Sbjct: 505 VLINLLTNALKFTDV-GSVTLRVFTQPLPAPFSLNQETLQPSLSLCFDVEDTGIGIANNE 563 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + +F Q S + +G GLGL I + G I+S+L +G V +P Sbjct: 564 LDHIFEAFIQTSSGR-RSHEGTGLGLAICHHFIHLMEGDIQIQSQLGQGTTVSVQIPV 620 >gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1079 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 7/275 (2%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E +A E + + RK+AEE N AKS FL+ MSHELRTPLNAI GFS+++ Sbjct: 672 QGEISHFVALKEN-ITELKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSS 730 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 PL N+ ++ + I +G+HLL LINE+LDL+RIEAG+ LS A+ I+ EC+ Sbjct: 731 RKNPL-NDKHRSMVEQIDGAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLP 789 Query: 338 MLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 +L A++ + + + V AD +QV++NLLSNA K+ GG V + V Sbjct: 790 LLHSLAEQHQVTFHSCCGEQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQAN 849 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + DNG GIAE + + F + +G G+G+ I + ++ GGQ Sbjct: 850 EPTGFLRFQVIDNGLGIAEEKQKQLFVPFARL-AQDSENIEGTGIGMTITKQLVEAMGGQ 908 Query: 456 FLIRSKLREGVEVIAILPNTR--VLNFIPEDNHES 488 S+ +G LP V + +P + E+ Sbjct: 909 IDFESRYGQGSTFWFTLPLADEVVEDEVPTLSAET 943 >gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA [Klebsiella sp. 1_1_55] gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA [Klebsiella sp. 1_1_55] Length = 916 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 19/358 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 S +L + I+ + + L V P+ ++T + LD + G + L Sbjct: 177 IFISSVMMLFCIGIALIFGWRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 233 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + ++ + + ++E+ D +KRA+E K Sbjct: 234 DMLKNGINSMAMSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 293 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN ++GF+ + + N T ++++ I RS +LL +IN++L Sbjct: 294 SEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L L + E + +L A +K +E+ I ++ V D + Sbjct: 350 DFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRL 409 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q++ NL+ NA+KFT G V V S I I+ D G GI E + + +F Sbjct: 410 QQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFR 469 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q +I G GLGL I Q ++ GG S+ G + N IP+ Sbjct: 470 QADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWFHISLDLNPNAIPD 527 >gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21] gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21] Length = 984 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2] gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] Length = 651 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A S R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 386 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 174/381 (45%), Gaps = 6/381 (1%) Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK-SATLLIALSISALSNFM 158 + R +++G +G + + L + + L + Sbjct: 7 EQSIQQLRHIMIIGMAFVGYSLGFMWFYDQVGAVIGSLLLLPVGLAAWLLGWRGGLLAAL 66 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 + + + F + + + + + +A ++ A+ + + + ++ + Sbjct: 67 IGICLNIGLFLLNGSSFAEILALG--PGLMMAFVVGGAIGWLRSLIDKIQTQTTELQRER 124 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + I++ + + ++ AE N +KS+FLA MSHELRTPLNAI+G+SE+++ + Sbjct: 125 ELLANEISQRKQIEQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQEDA 184 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 Y + + I +G HLL LIN++LDLS+IEAGR EL I+++ + + Sbjct: 185 -EADQLPNYVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELY 243 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +Q + + N + + L + +D + +RQ++LNLL+NA KFT G + + G Sbjct: 244 IQPQIAKNNNRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQ-GTITLRAKR-DG 301 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D G G++ + + F Q + + G GLGL I++S+ GG ++ Sbjct: 302 DWLHFEVVDTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMV 361 Query: 459 RSKLREGVEVIAILPNTRVLN 479 S L +G I+P ++ Sbjct: 362 ESVLGQGSNFQLIVPAFQLAP 382 >gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava] Length = 896 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T ++A+ +S Sbjct: 113 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLIFTGLAFTAILAVRMSRT 172 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N L L T+ + L + + + + + I Sbjct: 173 INGPLSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 229 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + +E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 230 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 289 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 290 QKSELTP----RQYDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 345 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 346 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAM 405 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q +I G GLGL I++ ++ Sbjct: 406 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIE 465 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 466 QMGGEIGVDSTPGEGSEFWISLNLPKAR 493 >gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 957 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHELRTPL ++LGF+E++ +T+ E K+Y+ I++ Q L + Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK---EERQKKYLTTIYQEAQRLTS 637 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ R+EAG+ + ++ ++++ I + +++ + E D +V Sbjct: 638 LINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKH--EFDMISDQEHFTVMG 695 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+ + Q+ N++SNAVK++ GG V V V + YI I+D G GI + + T Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDEGIGIPNKALGQLFTK 754 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + + G GLGL I + I+ HGG ++S+ ++G +LP Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLPL 805 >gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359] gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359] Length = 412 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 7/235 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTPL +I G++E + + + N E K ++ I + +L Sbjct: 182 LDEMRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTHL 239 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDL ++E E + L ++V ++Q A+E +E+ + +V + Sbjct: 240 INDLLDLEKMEESSVEFEMKELDLCEVVDYVYRIVQPIAEENEVELEIDCEN--VTVKGN 297 Query: 365 EKGMRQVILNLLSNAVKFT--AIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + Q++LNL+ NAVK+T G V V + + I ++D GPGI + + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGIPKEAQSRIF 357 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ HGG+ + S++ +G + LP R Sbjct: 358 EKFFRVDKARSRKMGGTGLGLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPKGR 412 >gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 769 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 14/288 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + L ++ Q E + ++ AE LAK FLA+MSHE+RT Sbjct: 69 LAQRLEEAERARERLQQELQRHGEL----EQELLRAKQAAEAAMLAKGEFLATMSHEIRT 124 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+ E+I + ++ + S LL ++++ILD S++EA + EL Sbjct: 125 PLNGIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELE 180 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381 + +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+K Sbjct: 181 ITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 240 Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V + + ++D G GIA + + SF Q + G Sbjct: 241 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGG 299 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 300 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 998 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 9/268 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ AEE KS FLA+MSHE+RTP+NAI+G + ++ E + P Sbjct: 477 LTERKHIEEALKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTP--- 533 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I I +G LL +IN+ILD S++E + L E ++ V + + ++ + A Sbjct: 534 -EQRDCIEVIETNGDALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAA 592 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402 K + + ID S+ + D ++QV+ NLLSNAVKFT G V V+ G Sbjct: 593 NKGLNLAYSIDKSVPEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVI 652 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GI + + + F Q + G GLGL I++ ++ G+ S Sbjct: 653 QFEVRDTGIGIPQNRMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESS 712 Query: 462 LREGVEVIAIL--PNTRVLNFIPEDNHE 487 G + P ++ P + Sbjct: 713 EGTGSSFHFTIRAPAVKLKFDSPAATSQ 740 >gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107] gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107] Length = 803 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 13/275 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H+ ++ + + + + + + K + + AE+ + AKS+FLA+MSHE+RTP+ Sbjct: 234 NHMRETLLDDIEQRHAIELALLSEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPM 293 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G +++ + +E K YI IHRSG+ LL++IN+ILD S+IEAG+ +L E Sbjct: 294 NGVIGMLDMLRDTPL----DENQKHYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEM 349 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L D+V CI + A ++NIE+F ++P + + D +RQ+I+NLL NA KFT Sbjct: 350 VFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFT 409 Query: 384 AIGGRVHVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 G V + VG + Q ++D+G GI + SF Q + Sbjct: 410 EE-GFVSLEVGLDNTALQAEGRLMLRFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYG 468 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I +S+ GG+ ++S EG + Sbjct: 469 GTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFT 503 >gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1006 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 95/390 (24%), Positives = 167/390 (42%), Gaps = 7/390 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + + A + + +L + + + + +A+++ + + + Sbjct: 183 KHLAICPMAAEDITYAVLEIGFLSEVDGRTRLLLERVSESVAIAVRSANYRAHLQTLLEE 242 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q+ + A + L ++N ++ + + Sbjct: 243 TQRQSEELQAQSEELRVANEELEEQGNALKETATRLELQQAELEQTNTQLEEQTQQLEAQ 302 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +L K E + KS FLA+MSHELRTPLN+ L ++++ G L+ Sbjct: 303 RDDLARTKLSLQHQAADLERASRYKSDFLANMSHELRTPLNSSLILAKLLADNPQGNLSE 362 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + I +G LLNLI++ILDLS+IEAG+ EL + + ++ E +Q A+ Sbjct: 363 EQVK-FAKTIQSAGNDLLNLISDILDLSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLAR 421 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + +I P + D + + QV+ NLLSNA+KFT G V ++V S + + Sbjct: 422 QKELRFETQIAPDCPKIIFTDRQRLEQVLKNLLSNAIKFTEQ-GEVKLSVTPLSNQRLAL 480 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GI+E + V +F Q + G GLGL I++ GG+ + SK Sbjct: 481 AVSDTGIGISEEQQQIVFEAFRQADSSSHRKHGGTGLGLSISKEFSRLLGGELRLESKPG 540 Query: 464 EGVEVIAILPNTRVLNFIPE--DNHESTQY 491 +G I+P P + ES + Sbjct: 541 DGSTFTLIIPADFDPTASPPTIASEESKEI 570 >gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] Length = 2272 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + N ++ Q L E E AK E + E+ Sbjct: 1771 IGISLSNALLFREIRKVSAKNASMIESQKRALALAREAEQKAKIAEAEAKHNVKLKEDAA 1830 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + ++ EY+ I LL LIN Sbjct: 1831 RAKSIFLANISHDLRTPMNGVIGLSELLKGTYL----DKEQDEYVESIRVCADTLLTLIN 1886 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + E I L+ +++ +E + +D V D Sbjct: 1887 DILDFSKLEAGKMKISTVPLNLKQTISEVIRALRYTHRDRGLETIENLDKVPPELVVLGD 1946 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + S+ D G GI + + + Sbjct: 1947 PVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGRVRLECSVSDTGIGIPDEQKARLF 2006 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + + G GLGL I ++I+ GG + SK G V L Sbjct: 2007 RPFSQADASTERSYGGSGLGLSICKAIIEDVLGGAIWLESKPGVGTTVTFHL 2058 >gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1816 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 166/400 (41%), Gaps = 26/400 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R +++ + G ++ L + +L T I + ++ ++ M + Sbjct: 1098 RSVVVLPILFEGEVKAVIELASFHRFGEIHLAFLDQLTESIGIVLNTIAASMRTEELLKQ 1157 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L Q + + A L + L ++N ++ + Sbjct: 1158 SQSLAEELRAQQAELTDSNRRLEQQANSLQASEDRLRNQQEELQRTNEELEERSRLLEVQ 1217 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ + EE + KS FLA+MSHELRTPLN++L S+++ Sbjct: 1218 NVEVERKNREIEQAKAALEERAQQLAVASKYKSEFLANMSHELRTPLNSMLVLSKLLSDN 1277 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L+ ++ IH +G LL LIN+ILDLS+IE+G ++ S L + Sbjct: 1278 ADGNLS-PKQVDFAQTIHSAGADLLALINDILDLSKIESGAMQVDVSECLLAGLQDYIER 1336 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + A +K + ++D ++W DE+ ++Q++ NLLSNA KFT G V V + Sbjct: 1337 AFRQLASQKGLRFAVEVDRRTPGAIWTDERRLQQIVRNLLSNAFKFT-EHGEVVVRIAPA 1395 Query: 397 SGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G +S++D G GIA + + +F Q G GLGL Sbjct: 1396 RGGWSRDAEGLNAAGSVLALSVRDTGIGIAPEKQRIIFEAFQQADGTTSRKYGGTGLGLS 1455 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLNFIP 482 I++ + GG+ + S +G LP R + P Sbjct: 1456 ISRELAKLLGGELAVESSPGKGSTFTLYLPEARLAVPAAP 1495 >gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] Length = 943 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 17/279 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--------TRKRAEEENLAKSRFLAS 255 T L ++ ++ E+DD +A+ + + E ++ AE N AKS FLA+ Sbjct: 226 TAQLARAFTDMMDKIKERDDKLADHRASLERTVEERTHDYRMAKEDAEAANAAKSDFLAT 285 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N +L +E++ + ++ Y I RSG+ LL +IN+ILDLS+IE Sbjct: 286 MSHEIRTPMNGLLVMAEMLSAANLSM----RHRRYAEIISRSGKSLLTIINDILDLSKIE 341 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 +G+ +L + +V + + +A+ N+EI I P+ + D + QV+ N Sbjct: 342 SGKLDLETAPFEPDAMVEDIACLFWEKARSNNVEIATYISPNTPQSILGDVTRLNQVVTN 401 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L++NA+KFT GG + V + I + D G GI + + +F Q + Sbjct: 402 LVNNALKFTEKGGVEIRVDGRLNKNGQRVRLRIDVIDTGIGIPADRLDQIFEAFSQADQS 461 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G GLGL + + +M GG + S +G Sbjct: 462 TTRKFGGTGLGLAVCKRLMHAMGGDVKVASAEGKGSCFT 500 >gi|295108000|emb|CBL21953.1| amino acid-binding domain sensor hybrid histidine kinase [Ruminococcus obeum A2-162] Length = 951 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 84/298 (28%), Positives = 148/298 (49%), Gaps = 7/298 (2%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + F I +F K +A + + + K+AE+ +L+ Sbjct: 512 MFAFFVAIGFFSLSIISIIFALLRKARKAEAVAKLAANDTQKLNDKLEIALKKAEDASLS 571 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+RFL +MSH++RTP+NAILG+++++E E G ET E++ + +SG LL++IN + Sbjct: 572 KTRFLNNMSHDIRTPMNAILGYAQLMEDELKGKGLPET-SEHLEKLQQSGTLLLSIINNV 630 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD++RIE+ R EL E+ + D+ + + +A +KNI + ++ V D + Sbjct: 631 LDMARIESERMELDENYCRIEDVWKSLFAVFDEKAMKKNIVLHYAMNVEHEHVLTDVTKV 690 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTS 423 +++ +N+LSNA+K+T GG V V + S IS+ D G G+++ + + Sbjct: 691 KEIFVNILSNAIKYTPAGGSVMVDIDELSCDESGYMIVRISVSDTGIGMSQDYQTKIFEA 750 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + KS G GLG+ I + + GG + S+L +G L R+ + Sbjct: 751 FTREQNTTKSKIAGTGLGMSIVKKYVELLGGIINVESELGKGSTFTVTL-KHRIADES 807 >gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 950 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 21/288 (7%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEV-----------AKSLSDETRKRAEEENLA 248 ++ + ++ Q + L +LE ++ E + AE A Sbjct: 398 LPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTQELENSQESLLEAKLVAEGATKA 457 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+NAI+G SE++ + + Y+ + +G+ LL +IN I Sbjct: 458 KSEFLANMSHEIRTPMNAIIGMSELVLQTDLTS----QQRNYLQKVQYAGELLLGIINNI 513 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 LD S++EAG+ EL + S+ +++ +L ++A+ K + + +DP + + D Sbjct: 514 LDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLR 573 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + Q+++NL +NAVKFT G + + S+ D G G+ + + Sbjct: 574 LSQILINLGNNAVKFTNQ-GEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQW 632 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F QG + G GLGL I++S+ GG + S + +G Sbjct: 633 FNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFT 680 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 136/256 (53%), Gaps = 5/256 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + +E ++ AE + AK FLA+MSHE+RTP+ AILGFS+++ + Sbjct: 245 RDITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSDLLIHDQRLQN 304 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E ++R+G+HLL+LIN++LDLS+IEAGR + S ++IVR+ ++ L+ Sbjct: 305 EFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIVRDVCQLMSLK 364 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A EK++ + + + D ++QV++NL+ NAVKFT G V +TV S Sbjct: 365 ASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPR-GSVQITVDIHSSGHA 423 Query: 402 Y---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D G G+ +I + F Q + G GLGL I++ I+ GGQ + Sbjct: 424 TMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVISKRIVEALGGQVSV 483 Query: 459 RSKLREGVEVIAILPN 474 S+ EG +LP Sbjct: 484 VSQSGEGSTFRVLLPL 499 >gi|163813929|ref|ZP_02205323.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759] gi|158450799|gb|EDP27794.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759] Length = 779 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 86/410 (20%), Positives = 169/410 (41%), Gaps = 23/410 (5%) Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 + + A L + + N+ + + + + + + Sbjct: 63 VAILTALAVLGICIYLANAKKMV-------RQSAIVIVFVITLMAFPMMFFTSGGAYSGM 115 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + ++ + L + M Y + +V+A + ++ Sbjct: 116 GFWFGLGMIFSF---LLIDGMFCYVMLAVQIIMVLACYIVSYKYPELVIPLANERSVYVD 172 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + I + + ++ K L E+E + A+ N AKS FLA MS Sbjct: 173 MLQSLIIFGIVIGSIVRFQNDVYKCKL-EEIEQINEELTRAKDDADVANHAKSEFLAHMS 231 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLN I+G +E+I ET E + DI S L++L+ ++LD S+IE+G Sbjct: 232 HEIRTPLNTIVGMNEIIMRETH----EEQTMKCARDIQSSSDVLVDLVRDVLDFSKIESG 287 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 R E+ ++ + +++ RA++KN+E+ ++ +L + D + ++++NL+ Sbjct: 288 RMEIVNEEYHFSQLLSNVLSVMESRARQKNLELDAEVQETLYNDLKGDSARICRILINLI 347 Query: 377 SNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 NAVK+T G + VTV + ++++D G GI E + + F + ++ Sbjct: 348 GNAVKYTKK-GSIRVTVHMENHGADPHNVELVMAVRDTGIGIKEEDQERLFKDFERLDLS 406 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + +G GLGL I ++ GG SK G + + R+ + Sbjct: 407 NNRSIEGTGLGLAITYHLVEMMGGSITCHSKYGYGTTFVVKISQERLSDE 456 >gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Magnetospirillum gryphiswaldense MSR-1] Length = 1117 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 14/316 (4%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 ++V L + ++ + T + S D Sbjct: 294 AAILVGLLVMLYVNRQVVGRLVRLQETMGSHARGVAMPIPTEGKDEIADMARSLGYFVDA 353 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + + R A++ N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 354 I----RQREDALSQARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRTGL---- 405 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + ++Y+ I + Q LL +IN+ILD S+IEAGR E + S+ D++ + ++ RA Sbjct: 406 DPRQRDYLIKIQNASQTLLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLITRRA 465 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ 401 +EK +EI L V D + QVI NL +NA+KFT +G V V + S Sbjct: 466 EEKGLEIVFATTGDLPQKVIGDPLRLAQVITNLCTNAIKFTHVGEVVVRVELQSISDGKA 525 Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G G+ E + + F Q + G GLGL I + ++ G+ + Sbjct: 526 CLLFSVRDTGIGLTEQQAARLFEPFSQADASTTRQFGGTGLGLSICRRMVELMEGRIWVD 585 Query: 460 SKLREGVEVIAI--LP 473 S+ +G LP Sbjct: 586 SEHGKGSTFSFTASLP 601 >gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] Length = 1302 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 148/266 (55%), Gaps = 14/266 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 +K A+ + AKS FLA+MSHE+RTPLN ++GFS+++ + NE +Y+ Sbjct: 656 NKELKNAKKMADIASQAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----NEIQTQYL 711 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ SG++LL++IN+ILD S+IE+G+ ELS ++ DIV + I ++ ++Q+KNIE+ Sbjct: 712 NYINESGENLLSIINDILDFSKIESGKMELSIEKANVYDIVSQVINVILYQSQKKNIELL 771 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIK 406 I+P L +W DE ++Q+++NLL NAVKFT G + + V + S++ Sbjct: 772 LNIEPGLPETIWLDESRLKQILINLLGNAVKFTQE-GEIELKVEKLSIESKNITLRFSVR 830 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + + +F Q + +I G GLGL I+ +I+ G + S+L +G Sbjct: 831 DTGIGIPKEKQKHIFNAFTQENSSISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGS 890 Query: 467 EVIAILPNTRVLNFIPEDNHESTQYK 492 + + + + HE K Sbjct: 891 TFYFDI----QVPYEMSERHEEEDLK 912 >gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571] gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571] Length = 763 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 108/285 (37%), Positives = 160/285 (56%), Gaps = 9/285 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSD------ETRKRAEEENLAKSRF 252 L + ++++ A+ LE A+ L++ E + RAE+ N AKS F Sbjct: 475 LKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEEKTRAEDANRAKSEF 534 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAI+GFSE++E GPL ++ Y+EY DI SG +LL++IN+ILD+S Sbjct: 535 LANMSHELRTPLNAIIGFSEIMESGMFGPLGSDKYREYCSDIKGSGTYLLDVINDILDMS 594 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IEAGR +L I L +I+ + + + ++ EK +++ ++ + D + ++Q++ Sbjct: 595 KIEAGRMQLELEDIRLDEIIADAMRVTAVKGDEKQLDMTAQVGAGQV-MRGDRRALKQIL 653 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNLLSNAVKFT GG V V +G I+I+D G GI + + F Q Sbjct: 654 LNLLSNAVKFTPEGGHVAVRAK-VNGGAAVIAIEDTGIGIPRHALNKIGRPFEQVESQFT 712 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +G GLGL IA+S+ HGG IRS G V+ LP V Sbjct: 713 KTHKGSGLGLAIAKSLAELHGGSMRIRSTEGAGTTVVVRLPIHGV 757 >gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1782 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++A+ + AK FLA+MSHE+RTP+NAI+G S++ + ++ K Y+ I R+ Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIERA 1087 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL++IN+ILD S+IEAG+ ++ L ++ + M +A K IE+ + P+ Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV++NL++NA+KFT G V +++ + S++D+G G+ Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTER-GEVLLSLSLVEQQDDDVVLRFSVRDSGIGL 1206 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I + ++ GG+ + S+ G Sbjct: 1207 TEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265 >gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 631 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 9/287 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A + +FF + S+V +L A I L S E ++AE+ N K Sbjct: 353 AVYIDKPQTFFQQHYVKIIASSVFLLLLIAAIVYYIRILRKTYSRLSEAVEKAEQANQLK 412 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLNAI+GFS ++ + +EY I + LL LIN+IL Sbjct: 413 SAFLANMSHEIRTPLNAIVGFSNML----PHTEDPVEMREYADIIETNTDLLLQLINDIL 468 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IEAG ++ S+I + + E ++LR + ++ + + D+ + Sbjct: 469 DLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPGCLFYIDKNRLI 528 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ N ++NA+KFT G + + T Y + D G G++ + V F + Sbjct: 529 QLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYVSDTGCGMSNEQCEHVFERFVK--- 584 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 QG GLGL I ++I+ GG+ + S+ +G LP + Sbjct: 585 -YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630 >gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] Length = 560 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 169/429 (39%), Gaps = 31/429 (7%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R + +V + ++ +W + + L + Sbjct: 6 RRSRAARLIATAMVGGLLFFYLGWTALIVWLVANTICELWVVYLERAYRPH-----WGQG 60 Query: 106 WRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 ++ +G A + W+ ++ I + + L + Sbjct: 61 VIRFMRIGPPSAFAMVWSFMSAYCVLNGPMAMRYAALLILFGIVVEGVRYAMNSLAAMLS 120 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L+ +P ++ + + L LA L Y+ + + + + Sbjct: 121 LTVWPFLMLAALPLLAKRFDLLDRLAAFAIL-LGLIGYVADAVRTMRASAKAREEAEAQA 179 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + AKS FLA MSHELRTP+N +LG + + G + Sbjct: 180 LEA------------------SRAKSAFLAMMSHELRTPMNGVLGLAHALR----GTKLD 217 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ I +SG L+ ++N+ILDLS+IEAG+ L + L + + + A+ Sbjct: 218 AQQSEYLEMIEQSGHGLMTILNDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESAR 277 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +++ ++ PS V D +RQ+++NL+SNA+KFT GRV + +G +G + Sbjct: 278 LKGLDLILEVSPSAPPWVSGDATRVRQILMNLVSNALKFT-ESGRVVIRLGGEAGGVVTL 336 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G G+ +I + T F QG +I G GLGL I + + G+ ++ S+ Sbjct: 337 SVTDTGVGMTAEQIGRLFTPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPG 396 Query: 464 EGVEVIAIL 472 G L Sbjct: 397 VGSTFTVRL 405 >gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521] gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521] Length = 1482 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 142/281 (50%), Gaps = 18/281 (6%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +AE + E +++L+ A+E + KS FLA+MSHE+RTP+ ++G SE++ Sbjct: 899 RRRAELKLEESMHERSRALA--AETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLC 956 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + ++ +++ +I RS LL +IN+ILD ++E G+ +L ++A +L ++ + Sbjct: 957 DTQL----SQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDT 1012 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 ML Q+K +E + + + + D +RQV+ NLL+NA+KFTA+ G + + V Sbjct: 1013 QKMLTFATQKKGLEFRNECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFTAV-GSITLRVI 1071 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 T + ++D G GI++ + + F Q + G GLGL I ++++ Sbjct: 1072 ETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKNLVD 1131 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVL------NFIPEDN 485 GG + S +G +P +V + P++ Sbjct: 1132 LMGGTIGLESVENKGSNAWFSIPFEKVQTLESSGDSSPDEE 1172 >gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 743 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 14/280 (5%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + + + R AEE AK+ FLA+MSHE+RTP+N ++G +E++ Sbjct: 331 VEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAELL 390 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + ++Y+ I S LL +IN+IL+LSR++A + EL + VR+ Sbjct: 391 SETKLSI----EQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSCVRD 446 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + +L+ +AQ K + + + + V+ D+ +RQV++NLL NA+KFT GG V + + Sbjct: 447 TMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGG-VTLRL 505 Query: 394 GWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + ++D G GIA +I V F Q G GLGL I++ ++A Sbjct: 506 RSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISRELVA 565 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GG+ + S L +G LP P+D+ + Sbjct: 566 LMGGRITVDSTLGQGSCFTLCLPL-----GSPDDDAGQSD 600 >gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 718 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 9/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + I +L+ + ET+ +AE N AKS FLA+MSH Sbjct: 216 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 275 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNA+LG++++++ + EY+ I+RSG+HLL+LIN++LD+S+I+AG Sbjct: 276 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGH 332 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 + + ++ E ++Q++A +K + + +++ S+ V D RQV++NLL Sbjct: 333 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 392 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G + + D+G GI+E V F Q I Sbjct: 393 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQN 452 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ + GGQ +++S+L G L Sbjct: 453 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488 >gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 917 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 106/461 (22%), Positives = 175/461 (37%), Gaps = 31/461 (6%) Query: 27 YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86 P++++ + L A L+ + A Sbjct: 65 APAQLERIAAQTLEQADVRAVAFLAPDRTRLAHAGPSMLNLPPSGGTGTQLLQRSGNDAT 124 Query: 87 LSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 L L W + L GT Y ++ S Sbjct: 125 RYLMPVFGHHRDLATDAVPAEAERL---------LGWVEIELSHDGTLLRGYRNLFTSLL 175 Query: 145 LLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L+ A L +S L + + + A + H+ + A I Sbjct: 176 LIFACLVLSGLLALRMSRTINDPIERIKHA--VNQLKDGHLEERLPAMGSHELDELARGI 233 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEV-------AKSLSDETRKRAEEENLAKSRFLASM 256 Q D ++ D RK A E + KS FLA+M Sbjct: 234 NRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANM 293 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLN ILGF+ +++ M P +Y+ I +S +LL +INEILD S+IEA Sbjct: 294 SHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLSTIEKSADNLLGIINEILDFSKIEA 349 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNL 375 G+ L +L D++++ + +L A K +E+ + SS+ D ++Q++ NL Sbjct: 350 GKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPSSLIGDPLRLKQILTNL 409 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +SNA+KFT G + V IS++D G G++ ++ T+ +F Q ++ Sbjct: 410 VSNAIKFTRE-GTIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSL 468 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG+ + S EG + L Sbjct: 469 ARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509 >gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 881 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 19/294 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + L + + DL ++ K+ S++ EE N AKS FLA + HE+RTPL Sbjct: 198 HQLEILIATLGQYFQDLQDLQTKMAQQKA-SEQA---LEELNRAKSEFLAMIGHEIRTPL 253 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA+ G + ++ + N+ KE++ I SG++LL +IN ILD S+IEA + EL E Sbjct: 254 NAVTGMTGLLLDTQL----NDQQKEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEQ 309 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 L + E + + +A +KN+E+ I+ + ++ D ++Q++ NL+ NAVKFT Sbjct: 310 PFELGPCIEEVLRLFVSQASKKNLELAYLIESNTPSAIIGDSTRLKQILANLIGNAVKFT 369 Query: 384 AIGGRVH------VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 G V + S + ++KD G GI + F Q + Sbjct: 370 KKGEVVIYVNATPIKSRQDSKQNSRYELRFAVKDTGIGIPSDRCNRLFQPFSQVDASTTR 429 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + GG + S +G + + P + E Sbjct: 430 KYGGTGLGLAISKGLSELMGGNMWVHSTEGKGSTFNFTIQTLAAPSSSPATSQE 483 >gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2] Length = 918 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 179/440 (40%), Gaps = 20/440 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 L A+ + + S + + + + + + Sbjct: 218 LSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRF 277 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G + + L EP + + +L++LS+ + + + Sbjct: 278 LRGLLLACVV---LLASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLY-Y 333 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 ++A + + SL L + + + L E Sbjct: 334 ILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFR 393 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Y Sbjct: 394 SRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA----Y 445 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG L+++IN+ILD +RIE+G+ L L +++ + + + +A EK + + Sbjct: 446 VETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRL 505 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SI 405 +D + + D +RQV++NLLSNA+KFTA G V V V G + + S+ Sbjct: 506 HLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGGRERLLYSV 564 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ +G Sbjct: 565 SDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKG 624 Query: 466 VEVIAILPNTRVLNFIPEDN 485 + LP + L+ D Sbjct: 625 TQFSVDLPLSPALDAGEADE 644 >gi|302503015|ref|XP_003013468.1| sensor histidine kinase/response regulator, putative [Arthroderma benhamiae CBS 112371] gi|291177032|gb|EFE32828.1| sensor histidine kinase/response regulator, putative [Arthroderma benhamiae CBS 112371] Length = 1345 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 723 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 782 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 783 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 839 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 840 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 898 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 899 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 958 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 959 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 992 >gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13] gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13] Length = 908 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL+ + I+ L + L V P+ ++T + LD + G + L Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + M T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L SL + + E I++L A EK +E+ + + V D Sbjct: 346 DVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + V + R + ++ D G GI+E + + Sbjct: 406 LRLQQIITNLLGNAIKFTETGNIDIRVELRGLQERQVELEVQIHDTGIGISERQQSQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+L G + Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515 >gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] Length = 1020 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 401 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 521 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 577 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 637 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727 >gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 893 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 134/254 (52%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + T +RAE + AKS FLA +SHE+RTPLNAI+G EV+ + + Sbjct: 354 ISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTT--- 410 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y ++ LL+LIN++LDLS+IEAG ++L + L+ ++ + + + A Sbjct: 411 -EQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTITAN 469 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRG 400 ++ + I + +L ++ D + +RQV+ NLL NA+KFT G + V Sbjct: 470 QQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQ-GLIRVETERLETPVASW 528 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 IS+KD G GIA+ + + +F Q +I G GLGL I++ ++ GG+ + S Sbjct: 529 IRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGVDS 588 Query: 461 KLREGVEVIAILPN 474 +L +G LP Sbjct: 589 QLGKGSHFFFTLPV 602 >gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida KT2440] Length = 917 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 21/286 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251 + + + + + + E I + +E+ D RK A E + KS Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ I +S +LL +INEILD Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + +S+ D ++Q Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+SNA+KFT G + V IS++D G G++ ++ T+ +F Q Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I++ ++ GG+ + S EG + L Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509 >gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 1567 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 137/252 (54%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ E + +AE + +KS FLA+MSHE+RTPLN ++GF++++ + N Sbjct: 916 ITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTEL----N 971 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ ++ S LL+LIN+ILD S+IEAG+ ELS I++I++ + I +++ +A Sbjct: 972 TSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKHKAH 1031 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +E+ I + ++ D +RQ++ NLL NAVKFT G + + + + ++ Sbjct: 1032 EKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNK-GEIELRIEAGNKNTEHQ 1090 Query: 403 ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GIA + + +F Q + G GLGL I+ ++ + + Sbjct: 1091 REYTFIVRDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDV 1150 Query: 459 RSKLREGVEVIA 470 +S+ G Sbjct: 1151 QSEPGIGSSFSF 1162 >gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 835 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 14/341 (4%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + L + V + L + + +++ A ++ T ++ Sbjct: 179 TRLRLGRAAFIVLALLSVAFLTLVAVLVAQRLISRVAVLSQGARYIASGALDTRVELDAS 238 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + A + ++ ++ + A AKS FLA+MSHE+RTPL+ ++G S Sbjct: 239 DELDELADSFNAMAAAVAESRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMS 298 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ + +E+ ++ S + LL+LIN+ILD S+ E+G EL E L + Sbjct: 299 ELLLGGRLSG----EQREFAETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQAL 354 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + +L RA++K I++ + D +L + D +RQ++LNL+ NAVKFT G V Sbjct: 355 TEDVVQILGSRARKKRIDLIARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTER-GHVL 413 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + V + ++D G GI E +P + F Q + G GLGL I++ Sbjct: 414 LAVHHNGDSDDKIRLHFEVEDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISR 473 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++ GQ + S L +G +LP L PE + E Sbjct: 474 QLVERMSGQISVSSVLGKGSTFRFLLP----LQVDPEPSTE 510 >gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp. HTCC2601] Length = 855 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 133/273 (48%), Gaps = 14/273 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E ++RAEE + AKS FLA+MSHE+RTP+N ++G +E++ + + Sbjct: 309 ITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLRESAL----S 364 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I SG+ LL +IN+ILD S+IEA R +L L V E ++MLQ A+ Sbjct: 365 DEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLMLQPTAR 424 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EK +E+ D L D +RQ+ NL+ NAVKFT G + +T Sbjct: 425 EKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCVEEGEAA 484 Query: 403 I--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + +++D G GI +I + F Q +G GLGL I + + GG+ + S Sbjct: 485 VHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAITKRLTDLMGGEIWVES 544 Query: 461 KLREGVEV--IAILPNTRVLN----FIPEDNHE 487 + G +LP +P+ E Sbjct: 545 EAGRGSCFGLRMVLPVDEPAQIETAALPDSLRE 577 >gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] Length = 701 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 7/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E +K+AE N AKS+F+A MSHE+RTPLNA+LG E + L + Sbjct: 306 ITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLNN--- 362 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + +S LL +IN+ILDLSRIE+G + L S I++++ +R L +A Sbjct: 363 -KQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQAT 421 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N++ +ID ++ ++ D+ + QV+ NL+ NAVKFT+I G V V V I Sbjct: 422 KNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSI-GSVRV-VARKVDDNIEI 479 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA+ + F Q +I G GLGL I+Q ++ G + S+L Sbjct: 480 AVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLESELG 539 Query: 464 EGVEVIAILP 473 G +P Sbjct: 540 TGSCFKISIP 549 >gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1989 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 165/389 (42%), Gaps = 25/389 (6%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 +++ + G ++ L ++ +LT + + IA+ ++ ++ M + Sbjct: 1104 NVVVLPVLFEGQVTAVIELASFQRFSEIHLTFFDQLSESIAIVLNTIAASMRTEELLKQS 1163 Query: 168 FPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI- 225 + L TQ + A + + L +A L Sbjct: 1164 QSLAEELQTQQGELRETNQRLEQQAQSLKASEELLKKQQEQLQQTNEALEEKARLLSLQN 1223 Query: 226 AELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+E + ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1224 EEVERKNAEIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNI 1283 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L EY I+ SG LL LIN+ILDL++IE+G + + L D+ + Sbjct: 1284 ENNLT-PKQVEYAATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQIERS 1342 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A +K +E DP L S ++ D K ++QV+ NLLSNA KFTA G+V +++ Sbjct: 1343 FRQIAHDKGLEFSIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAK-GQVSLSLEPAI 1401 Query: 398 GRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 ++ D G GIA + + +F Q G GLGL I Sbjct: 1402 RGWSLDNEILNSAELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLGLSI 1461 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ I GG+ + S+L G LP Sbjct: 1462 SREIARLLGGEITVISRLGYGSTFTLYLP 1490 >gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 718 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 9/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + I +L+ + ET+ +AE N AKS FLA+MSH Sbjct: 216 WILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSH 275 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNA+LG++++++ + EY+ I+RSG+HLL+LIN++LD+S+I+AG Sbjct: 276 ELRTPLNAVLGYTQLMK---CDQRLTAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGH 332 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 + + ++ E ++Q++A +K + + +++ S+ V D RQV++NLL Sbjct: 333 SVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLG 392 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G + + D+G GI+E V F Q I Sbjct: 393 NAIKFTYRGNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQN 452 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ + GGQ +++S+L G L Sbjct: 453 --GTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488 >gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 779 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 145/303 (47%), Gaps = 26/303 (8%) Query: 204 TYHLFKSNVKILSCQAEKDD-------LIAELEVAKSLSDE---TRKRAEE--------E 245 S L AE L A+++ + ++ R +A Sbjct: 338 PRRWQDSEKNFLQAIAEHLAVAIYQAKLYAQVQQQNNTLEQRVIERTQALRDALQAAQAA 397 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN-----ETYKEYIGDIHRSGQH 300 NLAKS FLA+MSHELRTPL ++G + + G ++ E + Y+ I +GQH Sbjct: 398 NLAKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSSQRLPVEKQQRYLKTIQENGQH 457 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSL 358 LL LIN+ILDLS++EAG+ L+ S SL + + + L +A ++ + + P Sbjct: 458 LLELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSLNEQAYQQQVTLQLDWRVPPER 517 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 AD++ ++Q++ NLLSN +KFT GG+V + V W ++D G GIA+ ++P Sbjct: 518 DCFSADQRRVKQILFNLLSNGIKFTPEGGKVILRV-WPENHLVVFQVEDTGIGIAQDQLP 576 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F Q + +G GLGL + + ++ H G+ + S + EG LPN + Sbjct: 577 LLFQKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKIEVESVVAEGSCFTVWLPNQPIA 636 Query: 479 NFI 481 Sbjct: 637 PAT 639 >gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii] gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii] Length = 589 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 8/268 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + L + + EL+ + A+ N AKS FLASMSHE+RTP+N Sbjct: 29 ALQREQAARLRAERALQRVSKELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMN 88 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G ++++ T+ P ++Y+ R+G LL+LIN+ILDLS++E+GR +L Sbjct: 89 AIIGMADLLWETTLTP----EQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSID 144 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 L +++ + ML LRA EK +E+ + + + D + Q++LNLL NA+KFT Sbjct: 145 FDLSELIDKTSEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTE 204 Query: 385 IGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + + SI D G G+ +I T+ +F Q I G GLG Sbjct: 205 KGSVVMSITNDPELRTPGAIRFSISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLG 264 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI 469 L I+Q + A GG+ + S+L EG Sbjct: 265 LSISQQLAALMGGRIWVESRLGEGSTFH 292 >gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 935 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 11/294 (3%) Query: 198 SFFTYITYHLFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 F +I HL + + Q +K L + + + A + K FL+ Sbjct: 518 VFLQHIAEHLAVAIEQASLYEQLQQQKVSLESCVIERTQSLRDALSAATAADRTKVEFLS 577 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPL I+G S + + G L+ E + Y+ I+RSG+HLL +IN+IL+ +++ Sbjct: 578 TMSHELRTPLTYIIGMSATLLRWSFGELS-ERQRSYLETINRSGEHLLTVINDILEFAKV 636 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVI 372 E+GR L+ S L ++VR Q A+ ++ + P + + AD K + Q++ Sbjct: 637 ESGRSLLNVSNFPLSNLVRSVATRYQEDAKNHDVSLSVDCVLSPEVENFRADSKRIEQIL 696 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NL++NA+KFT GG + + V + ++D G GI E + + F Q + Sbjct: 697 SNLVNNAIKFTPAGGEITLRV-QKELDSILLQVEDTGIGIPESQQKFMFEKFKQLESPFQ 755 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL + + ++ H G + S + +G I LP + P + Sbjct: 756 RQYAGTGLGLAMTKHLVELHNGTIQVISTVGKGSTFIVSLP----IQSQPTSDS 805 >gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1141 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 3/282 (1%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + L ++N ++ + + ++LE A + E + KS FLA+ Sbjct: 422 SQLRLELQAAELEQTNTQLEEQANQLEIQRSDLERANASVQLKAAELERSSQYKSDFLAN 481 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLN+ L ++++ L +E K Y I SG LLNLIN+ILDLS+IE Sbjct: 482 MSHELRTPLNSSLILAKLLADNPHENLTDEQVK-YARTIQSSGNDLLNLINDILDLSKIE 540 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 AG E+ S++ + M + A EK +E +D L D + + Q++ N Sbjct: 541 AGHVEIQPEEASVVRLTNGLRQMFEPVASEKQLEFIISLDEHLPKTFETDPRRLEQILKN 600 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+SNA+KFT G+V ++V S+ D+G GIAE ++ ++ +F Q I Sbjct: 601 LISNAIKFTEK-GKVELSVRPQGSDKIVFSVADSGIGIAEDQLNSIFEAFHQADSTISRR 659 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I++ ++ G + SK +G LP + Sbjct: 660 FGGTGLGLSISRQLVRLLAGTIAVESKPGQGSRFSVTLPLRQ 701 >gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 573 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 156/276 (56%), Gaps = 3/276 (1%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + D I E + + ++ AE + AKS FLA+MS Sbjct: 297 LVWARLSVSVIPGSSGEPEYFLAIIDDITERKQTEMKLRASQAAAEAGSRAKSEFLATMS 356 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAI+G S++++ E +G L NE +EYI I+ SG+HLL LIN+ILDLS++EAG Sbjct: 357 HELRTPLNAIMGLSQLLQQEIVGSL-NEKQQEYINCIYSSGEHLLALINDILDLSKVEAG 415 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + EL + +ID+ + ++ ++ RA K +++ Q+IDP + AD++ ++Q++LNLL+ Sbjct: 416 KEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRRIKQMLLNLLT 475 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT++ G V + V +I I D G GI + P + F Q + +G Sbjct: 476 NAIKFTSV-GEVSLIVKRVPEGINFI-ISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEG 533 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + + HGG + S + G + LP Sbjct: 534 TGLGLALTRKLARLHGGDVTVTSTVGVGSQFTLFLP 569 >gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] Length = 1522 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 8/277 (2%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 F T + + + I + A+ + R+ AEE N AKS FLA+MSHE Sbjct: 722 FIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKTAREAAEEANKAKSAFLANMSHE 781 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTP+NAILG ++ + + +Y + + LL L+N+ILD S+IE+G+ Sbjct: 782 LRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFSKIESGKM 837 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 EL + ++R+ ++L + K +E+ IDPSL V D ++Q++ NL N Sbjct: 838 ELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897 Query: 379 AVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT +G V + V + ++D G GIA ++ + F Q + Sbjct: 898 ALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRF 957 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I+Q +A GG + S+ +G L Sbjct: 958 GGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTL 994 >gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33] gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 783 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 742 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 10/276 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + ++ R AEE KS FLA+MSHE+RTP+N ++G ++++E + Sbjct: 341 ERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTEL-- 398 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + Y I S + LL+LIN++LDLS+++AG LSE ++ + + + Sbjct: 399 --DEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLFEP 456 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR 399 +AQEK I++ + + + D++ +RQVILNL+ NAVKFT G V V T Sbjct: 457 QAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAVKFTDDGAVAVSVNADHTRDH 516 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+KD+G GIA + + F Q AI G GLGL I++ + GG + Sbjct: 517 VTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGDITV 576 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 RS+L +G A L R+ + E+ Q Y Sbjct: 577 RSELGQGATFSAYL---RMNPATGDAVVENAQISDY 609 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 23/239 (9%) Query: 30 KMDFDRE-IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 + R ++ + R +L+A + I + L+ + + Sbjct: 5 HRRYSRRGLMNRYANGRVRYYLFRQSTFVLLATLIGILLSPNIGLICFLVAVVGDTIDTM 64 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-------PGTWTPEYLTIYK 141 +++ + V V + + P + Sbjct: 65 YLRRISP-VERPTPVRPLLRLSTVTALIQAASVAFVACAPGLFMDPGPADLHETHAATLF 123 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-----------ISLA 190 S +LI +I+A + + V A + +++ + + L Sbjct: 124 SLGILIGAAINATVSLPHHPMAGIVRLLVFAAAALLSVVWSAIGEPEFEAFHAFQLAGLL 183 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEEN 246 + + + F +IT +S L+ + L ++ ++ + AE N Sbjct: 184 ILYLSVIFFVNFITNRFHRSRKNTLAVALQNKQLEQINAKLQAQQLQSERLAVVAENAN 242 >gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 734 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 10/273 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + E R A + + KS FLA+MSHE+RTP+N ILG +EV+ + Sbjct: 211 QRRQLEKQLVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQ----NPESG 266 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+ I I S +LL+LIN ILDLS+IE+G+ EL ES +V+E I ++ A+ K Sbjct: 267 IKKKIQIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSK 326 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--- 402 +++ + + + D +RQ+++NLL NA+KF++ G + + S + + Sbjct: 327 GLDLHASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQ 386 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I +KD G G+ E + + + F Q + G GLGL I + ++ G+ + SK Sbjct: 387 IQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKP 446 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 EG LP +N +PE N + + Y+ Sbjct: 447 NEGSIFWVTLPLE-AINVMPE-NQRPRESQSYS 477 >gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1231 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 145/290 (50%), Gaps = 12/290 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHE 259 L + ++ E ++ LE+ + + ++ E KS FLA+MSHE Sbjct: 521 LRQQQEELKVSNEELEEQTRALEMRNKELELAKNDIEQKTEQLELSGKYKSEFLANMSHE 580 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S+ + L+ E E I++SG LL LINE+LDLS+IE+G+ Sbjct: 581 LRTPLNSLLILSKDLADNKKKNLD-EDQVESANIIYKSGHDLLVLINEVLDLSKIESGKM 639 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 ++ + L V++ I +L+A +K +++ L + D + + Q++ NL+SN Sbjct: 640 SVNLERVVLRTFVKDLISGFKLQATKKKLDLDLIYYEDLPEKIRTDPQRLDQILKNLISN 699 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GR+ + V + S+ D+G GI E + + +F Q + G Sbjct: 700 ALKFTER-GRIQLEVKRQNSDKILFSVIDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGT 758 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486 GLGL I++ + GG+ ++SK+ +G +LP R IP++ Sbjct: 759 GLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLLPIEGKRNETSIPKEET 808 >gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas haloplanktis TAC125] gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125] Length = 918 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 12/275 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ + + + E +K A++ N KS FLA MSHELRTPLN ++GF+ + Sbjct: 257 QATSDYRETLEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLH 316 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + N+ K+Y+ I S L+ +I++ILD S++EAG EL L D V E Sbjct: 317 KTPL----NKNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEV 372 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + +L A +K +E+ I P + + D ++QV++NLLSNA+KFT G +V ++ Sbjct: 373 MTLLAPSAHDKQLELSIYISPQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISH 432 Query: 394 GWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 +S+ D G GI + + T+FGQ +I G GLGL I + I+ Sbjct: 433 RLLDDERTSILVSVADTGVGIPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEA 492 Query: 452 HGGQFLIRSKLREGVEVI----AILPNTRVLNFIP 482 G+ + S G LPN + +P Sbjct: 493 MSGKITLNSAPGNGTCFTFNGVFRLPNHVFASDLP 527 >gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 783 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] Length = 939 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 10/279 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + I ++ + + +LE+ D +KRA+E KS FLA+MS Sbjct: 240 AMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMS 299 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++GF+ + + + +Y+ I +S +LLN+IN+ILD S++EAG Sbjct: 300 HELRTPLNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAG 355 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L D + E + + A EK +E+ K+D + S + D ++Q++ NL+ Sbjct: 356 KLALENIPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIPSGLVGDPLRIQQILTNLV 415 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 N++KFT G + ++V S + + ++D G GI+E + + +F Q +I Sbjct: 416 GNSIKFTER-GNIDISVELKSQKEDRVELQFMVRDTGIGISERQQAQLFQAFSQADASIS 474 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I Q ++ GG+ + S+L +G Sbjct: 475 RRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGSTFWFT 513 >gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 633 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 152/325 (46%), Gaps = 7/325 (2%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + +S ++ ++++ + + + + L + + K Sbjct: 310 LILISSIALIFMAGAAYLVAISITRPINEIISNFEDISKSALKGDLNRRAEADVGVDFRK 369 Query: 222 -----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 +D++ L++ + ++ K + + K FL+++SHELRTPL +I G+++ + Sbjct: 370 IPSGLNDILDSLQIYSNDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYD 429 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 E++G + N + K + + R+ L L++ +L +S+ +A E + I+ I Sbjct: 430 ESLGDI-NGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTI 488 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + + +E ++ I +KI L ++ ADE + ++ N++ NA+KFT GG + + V + Sbjct: 489 MDTIMLVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGV-FD 547 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++++ D G GI + IP + F Q +I+ G GLGL I + I+ H G+ Sbjct: 548 DENYLHLTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEI 607 Query: 457 LIRSKLREGVEVIAILPNTRVLNFI 481 I S+ +G V LP R + Sbjct: 608 WIESEPHKGTTVHIRLPKVRDGEEV 632 >gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886] gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886] Length = 690 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 127/267 (47%), Gaps = 11/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R++AE N AKS+FLA MSHE+RTPLNA++G + ++ + + Sbjct: 306 ITGRKHRVHELQQARQQAESANAAKSQFLAMMSHEIRTPLNAVMGLLDALQQSLL----D 361 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ + +S Q LL +IN++ DLSRIE+ R+ L +++ D V L+ + Sbjct: 362 DEQVAWVSQMDKSAQLLLTIINDVFDLSRIESERFSLHPELVNIRDSVTIVFNQLRETSS 421 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K I++ I ++ ++ D Q++LNL+ NAVKFT GRV V + I Sbjct: 422 HKAIKLEMDIADNVPDNIYQDGNRFTQILLNLVGNAVKFTEE-GRVDVAMSAV-NNRLKI 479 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + F Q +I G GLGL I + +++ G SK Sbjct: 480 SVSDTGIGINAERRKDIFQPFTQADGSITRQYGGTGLGLSICKKLVSMMNGSIDFESKPG 539 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G +P L P+ T Sbjct: 540 VGTTFFIDIP----LTEPPQSEQVKTD 562 >gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum H04402 065] Length = 522 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 299 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 354 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI I + + + ++ Sbjct: 355 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 413 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 414 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLDRIFERFYRV 472 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 473 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIPLS 520 >gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2] gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2] Length = 884 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 167/372 (44%), Gaps = 14/372 (3%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ G + + ++ + + +A ++IA I + L Sbjct: 262 RMVYANQMNGGAYYVSSIPKNILYESGKAITLFTALVVIASIIFLPILIFIVVRSLLLTP 321 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-- 226 ++A ++ + + + S F + + + + K+ L Sbjct: 322 LEMLAEASHRVGDGDLKILLPIEREDEMGSLFQDFNHMVSQIRHYQGQLEDYKEHLEEKV 381 Query: 227 -----ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 EL ++ +AE+ + KSRFLA+MSHE+RTPL AI+GF+E + + Sbjct: 382 AARTHELAKMNHQLEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTEQM----LTK 437 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ +++ + R+ +HLL LIN ILDLS+IEA + E+ + L ++ + ++ + Sbjct: 438 EPDDKKAQHLNTVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHV 497 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-R 399 AQ+KN+ + D L + +D ++QV+LN+ +NAVKFTA G V + + Sbjct: 498 LAQDKNLTFAVEYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAE-GSVTLAISAKHSLS 556 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G G++ E+ + F Q + G GLGL I++++ GG + Sbjct: 557 QLEFKVQDTGIGMSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVT 616 Query: 460 SKLREGVEVIAI 471 SK +G + Sbjct: 617 SKQTQGSCFLIT 628 >gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1] gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1] gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 783 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 720 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRT 262 + + EK+ LIAE + E +++AEE L+ KS FLA+MSHELRT Sbjct: 8 QSNQELEERSKLLEEKNHLIAERNL------EIQEKAEELALSTKYKSEFLANMSHELRT 61 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN+IL S ++ T L NE E I SG LL+LI+EILDLS+IEAG+ EL Sbjct: 62 PLNSILLLSRLMSENTEENL-NEDQIESAKVIQSSGTSLLSLIDEILDLSKIEAGKMELE 120 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381 + L D+ +E + +EK++++ + P L S++ D + QV+ NLLSNA+K Sbjct: 121 YQHVRLSDVTQELNSLFAPIVKEKSLDLNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIK 180 Query: 382 FTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 FT+ G + +T ++ ++KD G GIAE + + +F Q + + G GL Sbjct: 181 FTSKGSITLTITEEQSNRNNIVFAVKDTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGL 240 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 GL I++ I GG+ ++SK EG I+P ++ I E Sbjct: 241 GLSISREIARLLGGEIRLQSKENEGSIFSLIIPKSKQTTVISPATDE 287 >gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330] gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str. 870] gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513] gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686] gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis M163/99/10] gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94] gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str. 292] gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis M292/94/1] gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94] gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str. C68] gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99] gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330] gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 783 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] Length = 934 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 27/361 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LLI++ I+ L ++ L V P+ ++T + LD + G L Sbjct: 171 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 224 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 225 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 284 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + + T +Y+ I RS +LL++IN Sbjct: 285 RIKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLSATQIDYLHTIERSANNLLSIIN 340 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EAG+ L L + + E +L A +K +E+ + + V D Sbjct: 341 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDP 400 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVL 421 ++QV+ NLL NA+KFT G + + + S Q + + D G GI+E + + Sbjct: 401 MRLQQVLTNLLGNAIKFTEK-GNIDIRIEQRSLNTQAVELEVQVHDTGIGISERQQSQLF 459 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q +I G GLGL I Q ++ GG S+ +G + N Sbjct: 460 QAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAP 519 Query: 482 P 482 P Sbjct: 520 P 520 >gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] Length = 928 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 18/279 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ + NV + E + I EL+ + E +++AEE + KS FLA+ Sbjct: 659 QWNWVRMNVVLNRYDPENGLIELIGVNYDITELKETEQKLIEAKEKAEEADRLKSAFLAN 718 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLNAI+GFS ++ + +EY + + + LL LI++ILDLS+IE Sbjct: 719 MSHEIRTPLNAIVGFSSLLVET----EDQGEKREYSKMVEENNELLLQLISDILDLSKIE 774 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG ++ + + + + ++LR + +E+ + + +D + QV+ N Sbjct: 775 AGTFDFKIRDLDVNTLCGDVQRSMKLRVK-PGVELLFEPTLPSCVIVSDPNRLHQVVANF 833 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 ++NA+KFT G + + + I + D G GIA + F + S Sbjct: 834 VNNAIKFTTT-GYIRIGYDQPDAKHLRIYVSDTGIGIAPEACEKIFDRFIKL----NSFV 888 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 QG GLGL I++SI+ GG + S+L +G ILP Sbjct: 889 QGTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILPV 927 >gi|255943187|ref|XP_002562362.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587095|emb|CAP94759.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1302 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 673 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 732 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 733 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 789 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 790 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 848 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 849 TIRKSDREQCTTNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 908 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 909 SKRLVNLMGGDVWVTSEYGHGSTFHFT 935 >gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 3502] gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 19397] gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. Hall] gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall] Length = 569 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI+I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEK-VPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGT-RQDKGNIVFWVEDTGVGISEEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A E G GLGL I + I+ + G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRVEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1333 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 5/279 (1%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + ++ ++ L AE + R AE N AK FL+ +SHELR PLN++ Sbjct: 908 RRMILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEFLSILSHELRNPLNSM 967 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG++ ++ + + + + I RS Q +LI+++LD+SRI +GR + + Sbjct: 968 LGWANLLRTHQLEEVT---VNQGLEAIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVE 1024 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 LI ++ I +++L A+ KNI+I K+DP+ + + D ++QVI NLLSNA+KFT G Sbjct: 1025 LIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKG 1084 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 R+ VT+ +T + Q I +KD G GI +P V F Q + QG+GLGL I + Sbjct: 1085 RIDVTLEYTYFQAQ-IQVKDTGAGIKADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRH 1143 Query: 448 IMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDN 485 ++ HGG + S+ +G LP P Sbjct: 1144 LVELHGGTVEVESQGEGQGSTFTIKLPVQANRKENPVAT 1182 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 6/243 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ E K F++ +SHELRTPL +I G ++ + +E K + S Sbjct: 800 ERKQVE---KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSS-TSEQGKRLLQIATDS 855 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ RIE+G+ ++ L D++ I ++Q A + + + S Sbjct: 856 TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNS 915 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 S +WAD + Q + NL SNA+KF+ G V++ + ++++D G GI E + Sbjct: 916 SSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQ-VLVTVQDTGRGIPEDK 974 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + ++ F Q + G GLGL I +SI+ HGG+ ++S L EG LP Sbjct: 975 LESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLPILT 1034 Query: 477 VLN 479 V + Sbjct: 1035 VYD 1037 >gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 895 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELMESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----ENP 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERKEYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G Sbjct: 604 Q-GVELKFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTQGS---VSYGYRQEAEKVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKLNN----FAQGTGLGLSICKTIIERLGGEISVSSEVG 715 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP V+ + D E Sbjct: 716 TGTTFTFWLPLESVMQDVKADKEEHRD 742 >gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 767 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 15/342 (4%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 L + P V ++ L T+ + ++L L ++ ++ Sbjct: 425 GVLRHAFFPLEVRGRTLGMLC-LYTREERTPPRRVLALVEDLCGPVALAMDNARLYAEAQ 483 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + AEL + AE + KS FLA+MSHELRTPLN+I+GF+ Sbjct: 484 ALAQRLEQRVTERTAELAETNCALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFT 543 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ GPLN+E ++ +G + S +HLL LIN++LD+S+IEAG ++ A + Sbjct: 544 GILLQRLAGPLNDEQSRQ-LGMVQDSARHLLALINDVLDISKIEAGELRIAHEAFDIAAS 602 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +++ A+ K + + + + D + + Q+ LNLL+NA+KFT GRV V Sbjct: 603 IDKVAAIVRPLAERKRLCLQVERMTGPLVMTGDMRRVEQIALNLLTNAIKFT-EHGRVTV 661 Query: 392 TVGWTSGRG------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T+ S + + D G GI ++ + F Q + +G G Sbjct: 662 TLELESQHAADAGPERAGRPAVRLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTG 721 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 LGL I + ++A GG+ + S+ G LP V Sbjct: 722 LGLTICKRLVALMGGEITVDSEPGRGSRFTVTLPYETVAASA 763 >gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I + SG HLL+L+N+ILD S+IE + EL+ ++ D++ Q Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYQS 499 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396 ++K ++ + + ++ D+ +RQ+I NL+SNAVKFT G + + T+ Sbjct: 500 ICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTAK 558 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I ++D G GI + + + F Q + G GLGL I + + G Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618 Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490 + S +G +LP + +P D ++ T+ Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659 >gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] Length = 1044 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 173/466 (37%), Gaps = 30/466 (6%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLA 81 + + + LF +S +P V + + +A Sbjct: 343 AAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAFTLRSLVAAVGLQAGWYVAVMVA 402 Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 +L + + ++ + P + + Sbjct: 403 ALVLVWALLVLFDRRVLIPDDAR--TRRVVESENLNRTI---------VEAAPSGIALLS 451 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALS 198 A + L + + A S ++A S A L ++L + Sbjct: 452 LADGAVLLQNDTMRAYDARIAAAPSLAARLLARFDASPGASAWQSDLHVTLPTGGDETVD 511 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + ++ +L ++ I + + DE + A+ N AKS FLA+MSH Sbjct: 512 LLVNLVRTRYRDADVVLCNFSD----ITSQKNIERKLDEALRAADAANDAKSAFLATMSH 567 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAILG E+I E + +T +E + + + LLNLI++ILDLS+IEAG+ Sbjct: 568 EIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASSVLLNLISDILDLSKIEAGQ 623 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 + L + + + M + A K ++ +D +L+ D +RQ+ NL+ Sbjct: 624 MTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVG 683 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V++ I + D G G+ + + + F Q +I Sbjct: 684 NAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRR 743 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL + + + G ++S EG + LP + Sbjct: 744 YGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPLRAATDA 789 >gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 164/373 (43%), Gaps = 22/373 (5%) Query: 119 LCWTLLTL-----VEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFP 169 L W L L + G + + +A L L+AL + N L Sbjct: 149 LGWVELELSHNSMLLRGYRSLFASLLLITAGLICTGLLALRMGRTINNPLSQIKQAVTQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L T+ + LA + L S + + + I E Sbjct: 209 KDGNLETRLPLLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + ISI Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISI 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 HDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 E LP TR Sbjct: 502 SEFWISLRLPKTR 514 >gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 574 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 169/429 (39%), Gaps = 31/429 (7%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R + +V + ++ +W + + L + Sbjct: 20 RRSRAARLIATAMVGGLLFFYLGWTALIVWLVANTICELWVVYLERAYRPH-----WGQG 74 Query: 106 WRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 ++ +G A + W+ ++ I + + L + Sbjct: 75 VIRFMRIGPPSAFAMVWSFMSAYCVLNGPMAMRYAALLILFGIVVEGVRYAMNSLAAMLS 134 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L+ +P ++ + + L LA L Y+ + + + + Sbjct: 135 LTVWPFLMLAALPLLAKRFDLLDRLAAFAIL-LGLIGYVADAVRTMRASAKAREEAEAQA 193 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + AKS FLA MSHELRTP+N +LG + + G + Sbjct: 194 LEA------------------SRAKSAFLAMMSHELRTPMNGVLGLAHALR----GTKLD 231 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ I +SG L+ ++N+ILDLS+IEAG+ L + L + + + A+ Sbjct: 232 AQQSEYLEMIEQSGHGLMTILNDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESAR 291 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +++ ++ PS V D +RQ+++NL+SNA+KFT GRV + +G +G + Sbjct: 292 LKGLDLILEVSPSAPPWVSGDATRVRQILMNLVSNALKFT-ESGRVVIRLGGEAGGVVTL 350 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G G+ +I + T F QG +I G GLGL I + + G+ ++ S+ Sbjct: 351 SVTDTGVGMTAEQIGRLFTPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPG 410 Query: 464 EGVEVIAIL 472 G L Sbjct: 411 VGSTFTVRL 419 >gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171] Length = 917 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 19/380 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + L ++ LLIA+ + + L + ++ + L+ Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPISQIKLAVAQ 207 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231 + ++ + I Q D ++ Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYL 323 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S +LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407 + ++ D ++Q++ NL+SNA+KFT G V + IS++D Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503 Query: 468 VIAI--LPNTR-VLNFIPED 484 LP TR + +P Sbjct: 504 FWISLNLPKTRDDVEDLPAA 523 >gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 1039 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 713 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I + LL LI++ILDLS+IEAG +L S + + D++++ M QL+ + Sbjct: 714 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLK 770 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ ++ + Q+I+NL++NA+KFT G + Y Sbjct: 771 SDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQ-GSIRFGYKRQ-NNELYFY 828 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + ++ F + S QG GLGL I Q+++ + GG+ + S+ Sbjct: 829 VADTGCGIPQDKQKSIFGRFVKL----NSFAQGTGLGLSICQTLVEHMGGKIGVESEEGN 884 Query: 465 GVEVIAILP---NTRVLNFIPED 484 G LP V +P+D Sbjct: 885 GSTFWFTLPYKQAETVKKSLPKD 907 >gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 1039 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 713 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I + LL LI++ILDLS+IEAG +L S + + D++++ M QL+ + Sbjct: 714 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLK 770 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ ++ + Q+I+NL++NA+KFT G + Y Sbjct: 771 SDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQ-GSIRFGYKRQ-NNELYFY 828 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + ++ F + S QG GLGL I Q+++ + GG+ + S+ Sbjct: 829 VADTGCGIPQDKQKSIFGRFVKL----NSFAQGTGLGLSICQTLVEHMGGKIGVESEEGN 884 Query: 465 GVEVIAILP---NTRVLNFIPED 484 G LP V +P+D Sbjct: 885 GSTFWFTLPYKQAETVKKSLPKD 907 >gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 481 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV S + R+ AE N +KS FLA MSHE+RTPL Sbjct: 76 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 135 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ T+ E E + + RS LL +I++ILDLS+IE+G + L+E Sbjct: 136 NSVLGMLDILRQSTL----TEDQSEVLNQMERSADLLLAIISDILDLSKIESGSFHLNEQ 191 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 L D V I + A KN+ + W D + Q++ NL+ NA KFT Sbjct: 192 WTDLSDAVTLIISQQKQVATAKNLSFEFDCNLDKNKQYWIDSTRLSQILFNLIGNASKFT 251 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG + ++V IS+ D G GI + ++ + T+F QG +I G GLGL Sbjct: 252 DFGG-IDISV-IEKDSELVISVADTGIGIPKAKVGHLFTAFHQGDSSITRRFGGTGLGLA 309 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP---EDNHES 488 I + ++ G ++S+ G +P TR P E NH S Sbjct: 310 ITKHLVEMMRGTISVKSEENVGSHFKIRIPVLTRNNQERPVKIEQNHPS 358 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 10/273 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + ++ + I E ++ AE N +KS FLA+MSHE+RTPLNAI Sbjct: 624 IRDDHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPLNAI 683 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GF+ + + +Y+ ++ + LL +INEILD S+IEAG+ E + + Sbjct: 684 IGFNTLALETQLTA----QQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAVFN 739 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 ++++ I + Q +A K + + +L + D + QV++NL+ NAVKFT Sbjct: 740 PREVLQNIINLFQQQAAHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTEQ- 798 Query: 387 GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V + T S++D G G+A ++ + F Q +I G GLGL Sbjct: 799 GAVSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGL 858 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I++ I+ GG S+ G +P + Sbjct: 859 SISKRIVELTGGHIWAESEPGYGSVFSFNMPFS 891 >gi|17228673|ref|NP_485221.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130525|dbj|BAB73135.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 922 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 111/400 (27%), Positives = 170/400 (42%), Gaps = 34/400 (8%) Query: 78 ITLAVYAANLSL-GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L + +L G+ ++ + E W + ++ G+ W L + + Sbjct: 308 ANLVSQILSAALDGRPLLRVWPEPAE---WLLVFCWSFVSSGVTWHGLQVNSQRKQSLPG 364 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 I L+I LSIS + + + PV+ L T + ++ ++ Sbjct: 365 WPI-----LVILLSISIIFGSSYAAFMIGWWIPVMSPLLTTFLSTIVTTNL--------- 410 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 Y + Q L ++ + + A+ N AKS FLASM Sbjct: 411 --------YKQSQLEKANQQLQDYSRTLEEKVRDRTQELETAKIAADVANQAKSEFLASM 462 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN ILG+++++E E I IH+ G HLL LIN+ILDLS+IEA Sbjct: 463 SHELRTPLNGILGYAQILER---SENIAPAALEGINIIHQCGSHLLILINDILDLSKIEA 519 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G+ EL + + + M ++RA +K I DP L + ADEK +RQ+I+NL Sbjct: 520 GKLELHNTDFDFSYFLTGVVEMCRIRALQKGISFHYLPDPDLPQAINADEKRLRQIIINL 579 Query: 376 LSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L NA+KFT GG + V ++D G G+ ++ + F Q Sbjct: 580 LGNAIKFTETGGVNFTIQVLEAGADFNKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDK-N 638 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL I+ I G Q + S L G + L Sbjct: 639 KQAEGTGLGLAISCRIAELMGSQIQVDSILGTGSKFWLDL 678 >gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)] gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)] Length = 984 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1059 Score = 282 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 8/265 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+ + ++ AE N AKS FLA+MSHE+RTPLN I G E+++ + Sbjct: 515 VTPLKETERALSTAKQEAESANHAKSAFLATMSHEIRTPLNGITGMIELLQRSALSV--- 571 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I + L++++N+ILDLS+IEAG+ L + S ++ + ++Q +A+ Sbjct: 572 -EQRQQVETISKCSVVLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQAR 630 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402 K +++ +D L ++ D +RQV LNL+ NA+KFT G ++ + V + Sbjct: 631 NKELDLQLNMDEKLPSTMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVW 690 Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GIA+ ++ + F Q +I G GLGL I++ ++ G + S Sbjct: 691 VELAVQDQGIGIADEKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTS 750 Query: 461 KLREGVEVIAILPNTRVLNFIPEDN 485 +G LP +P D Sbjct: 751 IEGKGTHFRVTLPMQVAHTPLPADA 775 >gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 512 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 21/321 (6%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 +++ + L +++ + + I+ A + F I Sbjct: 204 TSVFSLFLISGGVAILLAIILVYIFSIRFTRPLKQINNAAKIIAGGDFQKRI-------- 255 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++S Q E L +R EE F+A++SHELRTP+ +I GF Sbjct: 256 --VVSSQDEIGQLADSFNHMVEDL----QRLEELRRG---FIANVSHELRTPMTSIRGFI 306 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E I G + E K Y+ + L L+N++LDL+++E+G L+ + ++ Sbjct: 307 EGILD---GTIPPERQKGYLTIVRDETNRLNRLVNDLLDLAKMESGELTLTMKPFDINEL 363 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +R C+I L+ KN+EI + V AD+ + +VI+NLL NAVKF+ G++ V Sbjct: 364 IRICVIKLETLITSKNLEIEANFEIDNMMVSADKDSIERVIINLLHNAVKFSNENGKIIV 423 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + Y+S+KDNG GI + + F + + + G GLGL I ++I+ Sbjct: 424 ETAKNKDK-IYVSVKDNGIGIDGDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNIVTE 482 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 H + S++ +G + L Sbjct: 483 HKQDIWVESEVGKGTKFTFTL 503 >gi|254506101|ref|ZP_05118245.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] gi|219550919|gb|EED27900.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] Length = 771 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 9/266 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI + + + +A+ AKS FLA++SHE+RTP+N +LG ++++ + Sbjct: 285 EIRHLIDKFNQKTVFLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTDL 344 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E ++++ ++ SG H++ L+NEILD S+IE G EL L I+ + Sbjct: 345 ----TEEQRKHLKTLYESGDHMMTLLNEILDFSKIEQGHLELEHQPFPLESIIGSINSVY 400 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 EK ++ + P +D+ +RQ++ NLL+NAVKFT+ G V V Sbjct: 401 FTLCSEKGLQFKVISEVPQGRWYRSDKARLRQILFNLLTNAVKFTSR-GYVEVYFTEKRA 459 Query: 399 RGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G +I ++D G GIA+ + F Q + G GLGL I + + G Sbjct: 460 NGVDYLHIRVRDTGIGIAKESQEKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMDGD 519 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481 + S++ G L + Sbjct: 520 IHLTSEVGIGSCFEVQLKMESCEPAL 545 >gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328] gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328] Length = 351 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 26/277 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + ++A+ + AE N A+S FLASMSHELRTPLNAI+G+SE++ + + Sbjct: 66 RDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLNAIIGYSELLREDAVDFG 125 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + I SG HLL +I +ILD+S++E+G + ++ +++E ++Q Sbjct: 126 YTDFIPD-LDQIRASGLHLLTIIQDILDISKLESGMMTVCLENFNIATLIKEIEALVQPL 184 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG---------------- 386 + + ++ P + ++AD ++QV+LNLLSNA KFT G Sbjct: 185 FPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENGLVNLNVIYIGQLDTKI 244 Query: 387 ---------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 V V G + D G G+ ++ + F + + +G Sbjct: 245 SAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIFEPFERADNSTTRRYEG 304 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL I++ GG + S++ EG A P Sbjct: 305 TGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFPL 341 >gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] Length = 747 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 153/325 (47%), Gaps = 23/325 (7%) Query: 186 DISLAGMLATALSFFTYITYHLF----------KSNVKILSCQAEKDDLIAELEVAKSLS 235 I +AG + + Y L + N L E + + +L+ AK+++ Sbjct: 280 TILMAGFILLLFAGLFYSISRLSLADQKAEYEKRKNELHLQTMKEMEVVNQKLKKAKNVA 339 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E + AE N AK+ FL++MSH++RTP+NAI+G + +I N EY I Sbjct: 340 KEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKID 396 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S QHLL +IN++LD+S+IEAG+ S S++D+V+E + + EK + + Sbjct: 397 SSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQQTLTIIKE 456 Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409 V D+ + Q+ NLLSNAVK+T GG++ V + + DNG Sbjct: 457 NIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVYAKYRFLVSDNG 516 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G++ T+ +F + ++ + QG GLG+ I ++++ GG + S+L +G Sbjct: 517 MGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQGSCFE 576 Query: 470 AILPNT----RVLNFIPEDNHESTQ 490 +L R + ++ + Sbjct: 577 VLLDLKIAEDRTVALAAQEETDEQD 601 >gi|326474208|gb|EGD98217.1| DRK1 histidine kinase [Trichophyton tonsurans CBS 112818] Length = 1331 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 870 KHVPPPPADGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963 >gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] Length = 1310 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE+ N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 698 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 757 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 758 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 814 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 815 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 873 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 874 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 933 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 934 SKRLVNLMGGDVWVTSEYGHGSTFHFT 960 >gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] Length = 569 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVEDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI+I + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVG-GKVPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V++ ++D G GI++ + + F + Sbjct: 461 YNQMIINLIDNAIKYTEPNGEVNIGTRQDKDN-IIFWVEDTGVGISKEHLDRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ G+ ++S+ ++G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 713 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 105/336 (31%), Positives = 162/336 (48%), Gaps = 9/336 (2%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + A S+ + D+++A A +F ++ + Sbjct: 104 GFARLAGSSPGALLGTAQQLTVLDSTPVESRPDGTRAADVAVAPPEGGATRWFAFVETAV 163 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + A ++ I E A DE R RAE ++AKSRFLA++SHE RTPLN I Sbjct: 164 VGRDGRPEVLSAGRE--ITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGI 221 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++ + P + YI + SG+ LL+LI+ ILD S+IEAGR +L+ Sbjct: 222 LGMADLVLDTPLSP----EQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFD 277 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 +V + +L RAQ+K +EI + L V D +RQ++LNL NAVKFT G Sbjct: 278 PAGLVESVVELLAPRAQDKGLEIAADLAEDLPLQVVGDSDRVRQILLNLAGNAVKFTESG 337 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V VT +G ++++D GPGI E +P + F QG + +G GLGL I + Sbjct: 338 G-VGVTAER-AGAEIALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITR 395 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 ++ GG+ + S+ EG +LP + P Sbjct: 396 RLVDRMGGRIEVTSRPDEGSCFRVVLPLRALGEERP 431 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 282 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L K ++ LE + + ++ AEE N KS+F+A++SHELRTP+NA Sbjct: 129 LHKLKKQLEEKNQTLQQQNQTLEAVITALQKAKQAAEEANSVKSQFMANISHELRTPMNA 188 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G+SE+++ E + I +I ++G+HLL++IN++LD S+IE G+ LS Sbjct: 189 IIGYSELLKEEAEDLQITGLVDD-IDNIEKAGRHLLDIINDVLDFSKIETGKMTLSLENF 247 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ ++ + +++Q + + + ++ +++AD +R+++LNLLSNA KFT Sbjct: 248 EILILINDIKMIVQPLVKNQLNHLEIDCADNIGAMYADLSKVRRILLNLLSNASKFT-EN 306 Query: 387 GRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + + V S + + D G GI + + + +F Q + G+G+GL Sbjct: 307 GTIKLIVSKESEENTQWIKFKVNDTGIGITDEQQQQIFHTFTQADGSSTRKYGGIGMGLT 366 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + + G + S+L +G LP Sbjct: 367 VTKRFVDIMQGTIHVESQLGQGSTFTVRLPIK 398 >gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1088 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 23/332 (6%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 ++ S V+A++ + ++ I A + + L + +A Sbjct: 301 RASIVKSQAVQVLAIAISIWILGVIIAILGYFFSAEITTNIKNLESVLKRVAEDTHDNEA 360 Query: 220 E------KDDLIAELEVAKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNA 266 E D A A +L + ++ A E + AKS FLA+MSHE+RTPLN Sbjct: 361 EALRHTINLDTAAGTAQAYALLERIIEQTLNDKQYAMEASEAKSMFLANMSHEIRTPLNG 420 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GF+E+++ + + +E+I I +S ++LL +IN ILDLS+IE+ + E+ E Sbjct: 421 IVGFTELLKDTELH----DEQREFIDIIEKSSENLLEIINNILDLSKIESNKLEIEEIVF 476 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + ID + + +RA EK+I++ +DPSL + D +++VI+NLLSNAVKFT Sbjct: 477 NPIDEFESAVEVYGVRASEKHIDLACYVDPSLERPLKGDPTKIKEVIINLLSNAVKFTNS 536 Query: 386 GGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG + V + +KDNG G+ + + +F Q +I G GL Sbjct: 537 GGAISVDIRRIECEILNRTRIRFQVKDNGIGVTSEQRSRIFEAFSQADTSITRKYGGTGL 596 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I+ + G + + S+ G L Sbjct: 597 GLTISSRFVELMGSKLDLESEPGNGTSFFFTL 628 >gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 657 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 148/288 (51%), Gaps = 2/288 (0%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 ++A T + L + + +AE+ L +E + E + Sbjct: 207 ATMAAAAITNAQLYAQAQQELTERRRAEAALEAERAQLARRVEERTADLMVANAELERAS 266 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K FLA+MSHELRTPLN ILG +E++ GP+ N+ E + + SG+HLL LIN Sbjct: 267 RLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPI-NQEQHEAVRSMSESGRHLLALIN 325 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +ILDLS+IEAG+ EL S + ++ + I M+ A +K I + I P + ++ADE+ Sbjct: 326 DILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSISPQVDVIYADER 385 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++Q+++NLLSNAVKFT GG+V + V + ++ D G GIAE ++ + F Sbjct: 386 RLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAEADMARLFQPFV 445 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL + Q + HGG ++S+ G LP Sbjct: 446 QIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLP 493 >gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] Length = 1309 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE+ N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 698 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 757 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 758 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 814 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 815 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 873 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 874 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 933 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 934 SKRLVNLMGGDVWVTSEYGHGSTFHFT 960 >gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1643 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 12/249 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + +++AE+ + AKS FLA+MSHE+RTPLNA++G S+++ ++ ++ ++++ Sbjct: 913 EIKQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSL----DKRQQDHLNK 968 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + S + LL +IN+ILD S+IE+G+ EL L ++V + K +E+ Sbjct: 969 VLSSSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYS 1028 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKD 407 + P + V D + QV+ NLLSNA KFT GG V + + ++D Sbjct: 1029 LPPQIPCVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKADSVTLRFFVRD 1088 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++E ++ + +F Q + G GLGL I++ ++ GG SK +G Sbjct: 1089 TGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEATSKPGQGST 1148 Query: 468 VIA--ILPN 474 LP Sbjct: 1149 FAFELTLPL 1157 >gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 573 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 158/276 (57%), Gaps = 3/276 (1%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 +T ++ + + D I + + + ++ AE + AKS FLA+MS Sbjct: 297 LVWTRLSVSVIPGSYGEPEYFLAIIDDITDRKQTEMKLRASQAAAEAGSRAKSEFLATMS 356 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAI+G S++++ E +G L NE +EYI I+ SG+HLL LIN+ILDLS++EAG Sbjct: 357 HELRTPLNAIMGLSQLLQQEIVGSL-NEKQQEYISCIYSSGEHLLALINDILDLSKVEAG 415 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + EL + +ID+ + ++ ++ RA K +++ Q+IDP S AD++ ++Q++LNLL+ Sbjct: 416 KEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRRIKQMLLNLLT 475 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT++ G V +TV +I I D G GI + P + F Q + +G Sbjct: 476 NAIKFTSV-GEVSLTVKRVPEGINFI-ISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEG 533 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + + HGG + S + G + LP Sbjct: 534 TGLGLALTRKLARLHGGDVTVTSTVGVGSQFTLFLP 569 >gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 572 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 96/446 (21%), Positives = 181/446 (40%), Gaps = 34/446 (7%) Query: 30 KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89 + + + I + L V+ ++ + + P + L LA N ++ Sbjct: 3 QERLEAKQIDSNTSLLRPVAYFFGFLYAVLTVAHFFLLEEPFKWILFLAALATAVINTAV 62 Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 G + + D +V + I L L + PE + + + Sbjct: 63 GFRANDIDPP--------RKEVVLLLLIFLASANSFLHLWLSQAPEQ----TTNIFVTVI 110 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + + + + F + + + + + A ++T LS+F ++ Sbjct: 111 ASGIVLSHRALWCSAVLFNWIGWIVISNVLQMALIQHFFFAMAMSTLLSWFAHLARK--- 167 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++ +L E ++A E + AKS FLA+MSHE+RTP+N ++G Sbjct: 168 ------NLVEKQQELERERDIALKHEKEAK----AATEAKSAFLANMSHEIRTPMNGVIG 217 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 E++ + + ++YI RS L+ +IN+ILD S+IE G + + Sbjct: 218 MIELVSQTKL----EKVQQDYIATAKRSADSLMVIINDILDFSKIEVGELTIELVEFDVE 273 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 E + Q +A EK +++ + + V D +RQ++ NLLSNA+KFT G Sbjct: 274 QFFAELLHDQQFQASEKGLKLSLIKEELQHTKVVGDPYRIRQIVNNLLSNAIKFT-QSGH 332 Query: 389 VHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + V TS + ++ D G G++ +P + SF Q + G GLGL I Sbjct: 333 IQVRYSLTSSSDNLELHCAVTDTGIGVSNEALPYLFDSFSQADTSTTRKFGGTGLGLSIT 392 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + + GG ++S+L +G Sbjct: 393 KQLCNLMGGDIKVQSQLGKGSTFEFS 418 >gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo] gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo] Length = 688 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 6/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ ++ R AE+ N AKS+FLA+MSHE+RTPLNAILG +V+ + N Sbjct: 303 ISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVLLSKCTDKNNT 362 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + S + LL +I+++LDLS+IE+GR ELS ++++ D+V + QL A Sbjct: 363 DVLR----MMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLVAN 418 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +++ + + + D + Q++ NL+ NAVKFT G + V V G+ I Sbjct: 419 EKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEA-GEIRVKVIRQPGQTLVI 477 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI E + V F Q +I G GLGL I++ + GG ++S+ Sbjct: 478 RVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQRH 537 Query: 464 EGVEVIAILP 473 +G E LP Sbjct: 538 QGSEFTLTLP 547 >gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] Length = 431 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L+ A++ + R++AE + +KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 170 HDITRLKKAEAELNRAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAS----AS 225 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +++ +H + + L LI +ILDLS+IEAG E + S + + ++ + + ++R Sbjct: 226 TEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLFRMR 285 Query: 343 AQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 ++K+ I+I ++ P ++ D ++QV+ N ++NAVKFT G + + Sbjct: 286 LEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTNAVKFTDE-GSITFGYNRCAEG- 343 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y +KD G GI E ++ + F + ++G GLGL I + I+ GG+ + S Sbjct: 344 LYFYVKDTGSGIPEDKVNHIFERFVRVEQ----NKKGTGLGLAICEMIIRKLGGKIGVES 399 Query: 461 KLREGVEVIAILP 473 + +G LP Sbjct: 400 EYGKGSTFWFTLP 412 >gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 757 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 101/402 (25%), Positives = 159/402 (39%), Gaps = 15/402 (3%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTW 132 L+TL + + + L + G + + Sbjct: 360 ILLTLFILWTLFYQRVQYRREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEF 419 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + YKS +LI S + F L T Sbjct: 420 DHD---FYKSLDMLIKPITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNG 476 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 F Y + + + I + + + + R RAEE + KS F Sbjct: 477 KGHIWWEFRYAQAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAF 536 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLNAI+GFSE++ + ++ E++ I ++ LL LIN+ILDLS Sbjct: 537 LANMSHEIRTPLNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLS 594 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 RIE+G+ + + L +++ QL + + + ++ + + AD + QVI Sbjct: 595 RIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVI 653 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NL++NA KFT G + + +T + IS+ D G GI + V F + Sbjct: 654 TNLINNAAKFTTQ-GYILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDE-- 710 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 QG GLGL I Q I+ + GG + SK EG I LP Sbjct: 711 --FAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 750 >gi|288869902|ref|ZP_06112218.2| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288869200|gb|EFD01499.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 950 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 139/267 (52%), Gaps = 9/267 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 AE E K +E + A N AK+ FL+SMSH++RTP+NAI+G + + + P E Sbjct: 416 AEQERQKKALEEAYQAARVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLSSP---E 472 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I+ S +HLL+L+NE+LD+SRIE+G+ +L+ + L +++ M + E Sbjct: 473 KIRDCLSKINVSSRHLLSLVNEVLDMSRIESGKIDLTPEEVKLPELIENVFAMCKPLISE 532 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399 K+++ +V D ++QV++NLL+NAVK+T GGR+ +++ Sbjct: 533 KDLQFQISASKVRHETVITDGDRLQQVLINLLTNAVKYTPNGGRISLSIKEIPSLSSQKA 592 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I D G G++E +P + F + + S QG GLG+ I ++I+ G + Sbjct: 593 QFEFIITDTGIGMSEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGSIEVT 652 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNH 486 S+L EG + + V + + Sbjct: 653 SRLGEGSQFTVTVQLELVNEEVTDTEE 679 >gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] Length = 1313 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE+ N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 708 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 767 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 768 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 824 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 825 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 883 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 884 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 943 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 944 SKRLVNLMGGDVWVTSEYGHGSTFHFT 970 >gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] Length = 381 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 12/253 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L+ A+ + R++AE + +KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 120 HDITRLKKAEVELHKAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAS----AS 175 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +++ +H + + L LI +ILDLS+IEAG E + S + + ++ + + ++R Sbjct: 176 TEEEKTQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLFRMR 235 Query: 343 AQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 ++K I+I ++ ++ D ++QV+ N ++NAVKFT G + + Sbjct: 236 LEDKAAVIQIIRETPADECIMYTDRNRLQQVVSNFMTNAVKFTDE-GSITFGYNRCAEG- 293 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y +KD G GI E ++ + F + ++G GLGL I + I+ GG+ + S Sbjct: 294 LYFYVKDTGSGIPEDKVNHIFERFVRVEQ----NKKGTGLGLAICEMIIRKLGGKIGVES 349 Query: 461 KLREGVEVIAILP 473 + +G ILP Sbjct: 350 EYGKGSTFWFILP 362 >gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 783 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1] Length = 917 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 21/286 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251 + + + + + + E I + +E+ D RK A E + KS Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ I +S +LL +INEILD Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + +S+ D ++Q Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+SNA+KFT G + V IS++D G G++ ++ T+ +F Q Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I++ ++ GG+ + S EG + L Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509 >gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 934 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ ++ R +AE + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 687 ITKLKETEAELIHARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETA----DI 742 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ + + LL LI++ILDLS+IEAG +E S + + + + + +Q++ + Sbjct: 743 EERREYMKIVRENNDLLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKTK 802 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E N+++ + + S+ + +D + QVI N ++NA+KFT+ G + VG+ G Sbjct: 803 E-NVKLVFEPNFSICHITSDRNRIYQVISNFVNNAIKFTSEGN---IRVGYVLKDEGLEF 858 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI + ++P + F + S G GLGL I QSI+ GG + S+ Sbjct: 859 YVQDTGIGIEKKQLPHIFERFVKLD----SFVHGTGLGLSICQSIVEQLGGHIGVDSEKG 914 Query: 464 EGVEVIAILP 473 +G +P Sbjct: 915 KGSRFWFTIP 924 >gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01] gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B] gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01] gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B] Length = 785 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 8/279 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + L+ +E R +AE AKS FLA+MSHELRTP+N +LG S++I ET Sbjct: 240 YQSHHRMHNLKQLNLEIEEARNKAERAAKAKSNFLAAMSHELRTPMNGVLGLSQMIAEET 299 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P KE+I I SGQHL+ ++N+ILD S++E + E ++ L ++ Sbjct: 300 KEPTT----KEHIRVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSA 355 Query: 339 LQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ EKNIE+ + + + D +RQ++ NL NAVKFT G V V Sbjct: 356 IKPLVDEKNIELILENEVSEYTEFTGDCARLRQILFNLAGNAVKFTNE-GHVLVRTELDE 414 Query: 398 GRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D G GIA + + SF Q + G GLGL I + + GG Sbjct: 415 SNQLLVMRVSDTGIGIAPDKHEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHI 474 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 ++S G + I LP V P+ E+ + + + Sbjct: 475 TLKSIEGVGSQFIVELPIPWV-ESAPKKQQEAPKPRAKS 512 >gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13] gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 783 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 603 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 146/271 (53%), Gaps = 3/271 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + E N K++FLA+ SHE+RTPL++I+GF+ ++ + P Sbjct: 209 IQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDP-TR 267 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + EY+ I SG+HLL LIN+ILDLS+IEA + E+ +++ ++ + + +++ +A Sbjct: 268 ERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAA 327 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K +++ ++DP++ + AD ++Q++LNLL NA+KFT G V + V + + Sbjct: 328 NKGVKLSLELDPNIKTFVADPLRLKQMLLNLLFNALKFTNQ-GTVGLKVTQQ-DSFIHFT 385 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + + + Q + + +G GLGL + + + H G + S++ Sbjct: 386 VWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVAH 445 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 G ILP + + ++ E + K A Sbjct: 446 GSRFTIILPLQQNEQVLVGEDVEDEETKSAA 476 >gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] Length = 1057 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 137/264 (51%), Gaps = 11/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + E + +AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 675 ITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLIAET----EDP 730 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EY+ + + + LL LI++ILDLS+IEAG E ++ + + +E + L L+ Sbjct: 731 DERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSLKVL 790 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K +E+ + D+ + QV++N ++NA+KFT G V + G Sbjct: 791 DKPVELRFGDHLPECRLVGDKTRITQVLINFINNALKFTRE-GSVTLGYRCDDGMMLTFY 849 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E E +V F + S QG GLGL I++SI+ GG+ + S+ + Sbjct: 850 VEDTGTGIPEQEQESVFERFVKL----NSFVQGTGLGLAISKSIVEQMGGRIGLNSEPGK 905 Query: 465 GVEVIAILP--NTRVLNFIPEDNH 486 G P TR ++ + D Sbjct: 906 GSCFWFTHPYIRTRSVSAVASDAE 929 >gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134] gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134] Length = 1808 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 17/260 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + ++ AE+ AK +FL++MSHE+RTP+NA++G + ++ E P Sbjct: 1275 ITDSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEEDHKP--- 1331 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + S ++LL LIN+ILD ++IEAG+ +L + + +A Sbjct: 1332 -EQLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAA 1390 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------ 397 EK IE+ ++ + ++ D + Q++ NLL NA+KFT G V V V Sbjct: 1391 EKGIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDK-GFVVVKVQLQETLPDKQ 1449 Query: 398 -----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 S+KD+G GIA + T+ F Q G GLGL I + ++ + Sbjct: 1450 NIPHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQ 1509 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GG+ + S+L +G E L Sbjct: 1510 GGEIGLHSELGKGSEFYFFL 1529 >gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 768 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R RAEE + KS FLA+MSHE+RTPLNAI+GFSE++ + ++ Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I ++ LL LIN+ILDLSRIE+G+ + + L +++ QL Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + + ++ + + AD + QVI NL++NA KFT G + + +T + I Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + V F + QG GLGL I Q I+ + GG + SK Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751 Query: 464 EGVEVIAILP 473 EG I LP Sbjct: 752 EGSTFIVTLP 761 >gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 768 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R RAEE + KS FLA+MSHE+RTPLNAI+GFSE++ + ++ Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I ++ LL LIN+ILDLSRIE+G+ + + L +++ QL Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + + ++ + + AD + QVI NL++NA KFT G + + +T + I Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + V F + QG GLGL I Q I+ + GG + SK Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751 Query: 464 EGVEVIAILP 473 EG I LP Sbjct: 752 EGSTFIVTLP 761 >gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 768 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R RAEE + KS FLA+MSHE+RTPLNAI+GFSE++ + ++ Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I ++ LL LIN+ILDLSRIE+G+ + + L +++ QL Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + + ++ + + AD + QVI NL++NA KFT G + + +T + I Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + V F + QG GLGL I Q I+ + GG + SK Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751 Query: 464 EGVEVIAILP 473 EG I LP Sbjct: 752 EGSTFIVTLP 761 >gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 768 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R RAEE + KS FLA+MSHE+RTPLNAI+GFSE++ + ++ Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I ++ LL LIN+ILDLSRIE+G+ + + L +++ QL Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMP 637 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + + ++ + + AD + QVI NL++NA KFT G + + +T + I Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + V F + QG GLGL I Q I+ + GG + SK Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751 Query: 464 EGVEVIAILP 473 EG I LP Sbjct: 752 EGSTFIVTLP 761 >gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi] Length = 922 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 153/349 (43%), Gaps = 27/349 (7%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + LL + ++ L + L V +V I + + L Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDVTAPIRNMVET--VDRIRRGQLDSR----VEGHMLG 228 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247 + + + + + E I ++E+ D +KRA+E Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ +T+ T K+Y+ I RS +LLN+IN+ Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 344 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LD S++EAG+ L SL + + E I++L A EK +E+ I + D Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + + + I IKD G GIAE + + Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQENLRVLLEIQIKDTGIGIAEAQQTQLFQ 463 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG SKL +G Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCT 512 >gi|325105218|ref|YP_004274872.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324974066|gb|ADY53050.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 787 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 175/475 (36%), Gaps = 28/475 (5%) Query: 43 ESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKKVMNSDI 98 + ++ L++ ++ + +Y+ + + + + Sbjct: 194 KDRSDAIILILTGCLIMGGFFFLALFLVGRRDNAILFFALFSILYSYRIIGTESYVLHSL 253 Query: 99 KIGEVYVWRIWLLVGQIAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSN 156 + I L + + L + P + + + +L+ S Sbjct: 254 FPNISWFLSIRLEYFSLFSSIGLFTLYNRFLFPQDVNKYIVRTVVTICISFSLATIFFSP 313 Query: 157 FMLPYAVFLSFFPVVVALSTQAIM---------SMHVLDISLAGMLATALSFFTYITYHL 207 F+ + F + L+ + + I+ +L S + + L Sbjct: 314 FIFTQLINPFLFVCLFCLTYTPYVYLLAYKRKRPGAIYTIASTLVLVLIFSLTLFRYWRL 373 Query: 208 FKSNVKILSCQAEK---DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + +A +K AE +AKS FL++MSHE+RTPL Sbjct: 374 IDHHQILNFFGYISIFFLQSLALSHRVSFALRRAKKEAETGLIAKSEFLSTMSHEIRTPL 433 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+++G + ++ + E KE + + S +LL ++N+ILD ++IEAG+ Sbjct: 434 NSVIGVTHLLLKNS----PREDQKEQLDIMLFSANNLLAIVNDILDYNKIEAGKISFENI 489 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 + + + + I A +K IE+ +D +L + D + Q++ NL+ NA+KFT Sbjct: 490 KMDISKLAQNLISSQLSFADDKGIELRLNLDKNLSPHLKGDPTRLHQILSNLVHNAIKFT 549 Query: 384 AIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + V + + Y +KD+G GI++ + + F Q + + G GL Sbjct: 550 QKGFVELGIVVKNSNDNKQTLYFYVKDSGIGISKEKQDIIFDQFTQADSSTSRSFGGTGL 609 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQYKC 493 GL I + I+ + + S+ +G VL + K Sbjct: 610 GLAICKRILELQHSELRLESEENKGSTFFFTHTFEKETVLENSSSADQTVFDKKT 664 >gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1153 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 20/297 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-------LIAELEVA-KSLSDETRKR 241 AG F +L + E + L+ E + +++ ++ Sbjct: 321 AGEAVGVEVRGVRRDGSFFWGEFTVLRVEGEAESSRSYECILVDTTERKFREIAEREKQA 380 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A N KS F+A+MSHE+RTP+NAI+G S + + ++Y+ I S Q L Sbjct: 381 AVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTS----RQRDYLTKIEYSAQSL 436 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 L +IN+ILDLS+IEAGR + L D + M+ ++A EK +++ I + + Sbjct: 437 LRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADEKGLDVIFDIGKDVPTG 496 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAE 414 + D + QV+LNL NAVKFT G+V + V G S+ D G G+ Sbjct: 497 LIGDPTRLNQVLLNLTDNAVKFTEQ-GQVIIKVRREREAADVQGSTLRFSVIDTGIGMRA 555 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + P + SF Q +I G GLGL I++ I+ GG+ + S+ G Sbjct: 556 QQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGEISVSSEFGVGSTFTFT 612 >gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1] gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1] Length = 783 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|83772706|dbj|BAE62834.1| unnamed protein product [Aspergillus oryzae] Length = 1362 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 728 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 787 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 788 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 844 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 845 FNALKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKL 903 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 904 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 963 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 964 SKRLVNLMGGDVWVTSEYGHGSTFHFT 990 >gi|117926619|ref|YP_867236.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610375|gb|ABK45830.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1390 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 11/299 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + + L+ + A ++RAE N AK Sbjct: 666 GAQVLGVMVLYLAHGHEQKERETAFLARAGHIISMGLMRRRAAKELSCAKQRAERANHAK 725 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+R P+NAI+ S + ++ ++ ++Y+ IH +GQ LL +IN+IL Sbjct: 726 SDFLATMSHEIRNPMNAIIALSHLALEQSH----DQRQRDYLSKIHTAGQSLLRIINDIL 781 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S+IEAG+ E+ ++ L D++ + ++AQEK IE+ P+L + D + Sbjct: 782 DFSKIEAGKLEIEQTDFQLDDVLSNLATLTAVKAQEKQIELIFDKAPALPHALRGDPLRL 841 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSF 424 Q++LN++ NA+KFT G V +++ + RG +++D G G+ E +I + + Sbjct: 842 SQILLNVVGNAIKFTEQ-GEVEMSITRHTQRGELLELCFTVRDTGIGMNEAQIAELFRPY 900 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 Q + G GLGL I+ ++ G + S G + + LP VL PE Sbjct: 901 QQAESSTSRRFGGSGLGLSISHQLVTLMNGTIQVSSTPGVGSQFVITLPFA-VLPDRPE 958 >gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 922 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 153/349 (43%), Gaps = 27/349 (7%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + LL + ++ L + L V +V I + + L Sbjct: 175 FMAAMLLLFCMGVAMLLAYRLMRDVTAPIRNMVET--VDRIRRGQLDSR----VEGHMLG 228 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENL 247 + + + + + E I ++E+ D +KRA+E Sbjct: 229 ELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAAR 288 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHELRTPLN ++GF+ +T+ T K+Y+ I RS +LLN+IN+ Sbjct: 289 IKSEFLANMSHELRTPLNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIIND 344 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LD S++EAG+ L SL + + E I++L A EK +E+ I + D Sbjct: 345 VLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPL 404 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + + + I IKD G GIAE + + Sbjct: 405 RLQQIITNLLGNAIKFTEQ-GNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQ 463 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG SKL +G Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCT 512 >gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1052 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + L E R RAE N AKS FLA+MSHE+RTP+NA++GF+ + + Sbjct: 483 ITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFT----DLLLDSGLD 538 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +Y I +SG+ L++LIN+ILD S+IEAG + E + + M++ R Sbjct: 539 DIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRIG 598 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK IEI I ++ + D +RQV+ NL++NA KFT G + +++ + Sbjct: 599 EKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEA-GEIELSLDVEEEDEGRV 657 Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G GIA ++ + F Q + G GLGL I + I GG Sbjct: 658 KLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWAE 717 Query: 460 SKLREGVEVIAI 471 S +G Sbjct: 718 SDEGKGSIFHFT 729 >gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 970 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 16/303 (5%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A L I + + Q +D L + + R++AE N AKS FL Sbjct: 323 AGTLIGVLGIGRDITALKLTEQELQNHRDHLEDLVAERTAELMAAREQAEAANQAKSVFL 382 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTP+NA+LGF ++ + + + + I SG LLNLI +ILD SR Sbjct: 383 ATMSHEIRTPMNAVLGFCNLLYRRRLDAES----HDLVRKIQVSGALLLNLIEDILDFSR 438 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEA R E++ S L ++ + +++ A K +E+ P ++ + DE+ ++QV+L Sbjct: 439 IEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLELEIAPLPEVNDLIGDERRLKQVLL 498 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 LL+NAVKFT GRV + V S + S++D+G GIA + + ++F Q Sbjct: 499 KLLANAVKFTEQ-GRVEIRVDLESEDMREVRLRFSVRDSGIGIAPAQQAAIFSAFNQADG 557 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-------VLNFIP 482 +I G GLGL I+Q ++ GG+ + S+L G E LP R V P Sbjct: 558 SISRRFGGTGLGLAISQQLVHAMGGRLQVTSELGRGSEFWFELPFRRDPRALSGVTAAQP 617 Query: 483 EDN 485 ++ Sbjct: 618 SED 620 >gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 635 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I Sbjct: 256 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 311 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 312 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 371 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+E+ D + QV+ N LSNA+K T G + + + G Sbjct: 372 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 428 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 429 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 484 Query: 463 REGVEVIAILPNTRVLNFIPE 483 +G LP V + E Sbjct: 485 GQGSTFALYLPYQEVPKEVAE 505 >gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 683 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 152/289 (52%), Gaps = 7/289 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 ++ + ++++ + + + EK L + + AE N +S FLA Sbjct: 398 LLIAIAEQLAIAIYQAEL-MQTLTQEKQTLEQRVIERTIGLRDALLAAEAANRLRSEFLA 456 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHEL TPL ++G S + +G L+ + ++Y+ IH SG+HLL +IN+ILDLS+I Sbjct: 457 TISHELLTPLTYVIGMSSTLLRWPLGELS-QRQRDYLQTIHDSGEHLLEMINDILDLSQI 515 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 EAG+ L+ S SL+++ + + L+ +A ++ N+ + +IDPS AD + + Q++ Sbjct: 516 EAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQIDPSRDRFTADAERVAQIL 575 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLL+NA+KFT G V + + W ++D G GI E ++P + F Q + Sbjct: 576 SNLLTNAIKFTPESGNVTLRL-WVEDDTAIFQVEDTGIGIREEQLPLLFEKFQQLDTPYR 634 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLN 479 +G GLGL + + ++ H G+ + S + G +P RVL+ Sbjct: 635 RRYEGTGLGLALTKQLVELHRGRIEVESTISIGSIFTVWIPTQAMRVLS 683 >gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 798 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 796 >gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 962 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 7/252 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHELRTPL+++LGF+E++ + + P E K+Y+ I++ + L Sbjct: 584 EVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKP---ERQKKYLTTIYQEAKRLTA 640 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ R+E+G+ + ++ I+ I + K + + + + ++V Sbjct: 641 LINDFLDVQRMESGKQTYDKKYEDIVSIIENVIET--QKVNTKIHQFHVQKETNNTTVLG 698 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV NL+SNA+K++ GG + V + + G + ++D G GI E IP + T Sbjct: 699 DRDKLAQVFTNLISNAIKYSPEGGNITVRI-YERGTRLCVDVQDEGLGIPEEAIPNLFTK 757 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + + + G GLGL I + I+ H G+ + S+L++G LP VL E Sbjct: 758 FYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLPLV-VLASEEE 816 Query: 484 DNHESTQYKCYA 495 ++ +A Sbjct: 817 GERDNNDKHAHA 828 >gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 886 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 153/297 (51%), Gaps = 5/297 (1%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAE 243 ++ T LS I S +S AE L E + A+S E ++ AE Sbjct: 591 WVGGEVVGTILSEQIDIPRTWEVSEQNFVSSIAEFVALTLEVCDRKSAESALREAKEAAE 650 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AK FL +MSHELRTPL++IL +E ++ E G + E ++++ + SG++LL Sbjct: 651 VANRAKKTFLVNMSHELRTPLSSILEIAEALQNEVYGTVT-EEQRQFLNTLESSGKNLLE 709 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+IL+L+ IE+ + EL +A + ++ + ++ A +KNI++ +I L + Sbjct: 710 LINQILELTDIESSKIELQLAATFIPELCDSSLSFVKNLALQKNIQLSVQIPEELEPIQV 769 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLT 422 DE+ +RQV +NLLSNA+KFT GG+V + V S + S+ D G G+ ++ + Sbjct: 770 DERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNSTNEYIFFSVVDTGIGMLSDDLFRLFQ 829 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q A G GLGL + Q I+ HGG S+L +G LP +V Sbjct: 830 PFIQVENASTRRSAGTGLGLVMVQKIVELHGGTVHAESQLGKGSRFTVKLPWKKVGE 886 >gi|326477630|gb|EGE01640.1| two-component osmosensing histidine kinase [Trichophyton equinum CBS 127.97] Length = 1321 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 870 KHVPPPPADGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963 >gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 812 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 150/272 (55%), Gaps = 10/272 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L+ ++ +I A + D+ +E+ +SL + + AE N+AKS+FLA+MSHELRTP+N Sbjct: 396 LYSTHGQIEGFMAVERDITQRVELEESLKIKAVE-AEAANIAKSQFLAAMSHELRTPMNG 454 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG ++++ T+ NE +EY+ SG+H+LN++N+ILD S+IEAG+ EL + Sbjct: 455 ILGVGDLLKNTTL----NEEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEF 510 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L D+V + + +K++E + S + ADE + Q++ NLLSNA+KFT+ Sbjct: 511 LLKDVVARLTRLYEPLCADKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSE 570 Query: 386 GGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GG + +++ + +I + D G GI+ + + F Q G GLGL Sbjct: 571 GG-ITLSLDVVEQSHRIELHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGL 629 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I + ++ G + S++ +G + ++P Sbjct: 630 SITRDLVKAMNGTVDLSSEVGKGSQFTIVVPV 661 >gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 785 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + +++AE +AKS+FL++MSHE+RTP+NA++GF+ ++ + Sbjct: 391 IDEQKKAEQELIKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQ----DPK 446 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ + S ++LL LIN+ILD S+IEAG+ E E +++ ++ + +A Sbjct: 447 PEQMEYLNILKFSAENLLVLINDILDFSKIEAGKIEFEEVDFNVLALLENIRSGVLQKAN 506 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQ 401 EK I + K+ + V D + Q++ NL+SNAVKFT G+V ++ V + + Sbjct: 507 EKGIMLKLKVSNDVNIMVVGDPTRLGQILTNLVSNAVKFT-ESGKVTISAAVSARADKHV 565 Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I ++D G GI ++ + SF Q + G GLGL I + ++ + Sbjct: 566 TIDFRVEDTGIGIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIHVD 625 Query: 460 SKLREGVEVIAIL 472 S+ G L Sbjct: 626 SEQGNGSAFYFSL 638 >gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] Length = 1145 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 163/371 (43%), Gaps = 5/371 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R L + G + L L + + ++ IA +I + + Sbjct: 332 RYLTLAPAMVDGEVKAVFELGFLHPVGDHVLALLERSSNTIAAAIRSAEFRTQLRTLLHE 391 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + + + L + + L ++N ++ E + Sbjct: 392 TQRQTEELQVQGEELRVSNEELEEQSRALKESQARLEQQQVELEQTNSQLEEQAQELERQ 451 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +LE A + E + KS FLA+MSHELRTPLN+ L ++++ L Sbjct: 452 KDDLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADENLTA 511 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + I SG LLNLIN+ILDLS+IEAG E+S +++ V + A Sbjct: 512 EQVK-FAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQLFDPLAA 570 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + ++ P + SV D + + QV+ NLL+NAVKFTA G+V + V I Sbjct: 571 QKGLNLSIEVAPDVPSVIETDPQRLEQVLKNLLANAVKFTAE-GQVSLLVRPAGDAQIAI 629 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIAE + + +F Q I G GLGL I++ ++ GG+ ++S+ Sbjct: 630 SVVDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHLQSRPG 689 Query: 464 EGVEVIAILPN 474 G I+P Sbjct: 690 TGSTFTVIIPK 700 >gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 557 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 13/266 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I ++ + E +++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 152 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 211 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ E ++Y+ +H + + LL L+N+ILDLS+IEAG E S + + Sbjct: 212 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 267 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + + +++ N + +P L V D + QV+ N +SNA+KFT G Sbjct: 268 LLLNDLEQLFRMKI-GSNSPVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTE-G 325 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + +S G + D G GI+ ++ V F + G GLGL I ++ Sbjct: 326 SIRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKT 380 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ GG+ S++ +G LP Sbjct: 381 IVNKLGGEIGAESEVGKGSTFWFTLP 406 >gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 93/418 (22%), Positives = 170/418 (40%), Gaps = 19/418 (4%) Query: 63 GTWFTQNPIFPMWSL-ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121 G W + ++ + + + E++ +L + Sbjct: 230 GFLVKWLADDGGWVAQGIYVLMFSHCLIAIQFSRHFLHTRELFPGLDLVLRCTLL----V 285 Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 L +++ + +I S T+++ + L+ + +A Sbjct: 286 ALGSMLSGLLLDVQTWSILASITVIVTSTGLLLTGAFVWRRGVRYGVYYTLAWGVLLASF 345 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + V SL L F+ + + L E ++ E +R Sbjct: 346 ILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSR----EAAER 401 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A EN AKSRFLA MSHE+RTPLN +LG +++ + + + + Y+ I SG L Sbjct: 402 AASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQQFYLDTISSSGNSL 457 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 + +IN+ILD +RI +G+ L + L ++ E I + +A EK + + ++P + Sbjct: 458 MAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGVPRR 517 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGE 416 + D ++Q+++NLLSNA+KFT G V + V R + D+G G+ + Sbjct: 518 IRGDPTRLKQILMNLLSNALKFT-EHGHVLLEVSSRQTQDGSRRLVFCVSDSGIGMRQEV 576 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + SF QG + G GLGL I++ ++ G ++S G +P Sbjct: 577 LAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPL 634 >gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 657 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I Sbjct: 278 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 333 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 334 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 393 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+E+ D + QV+ N LSNA+K T G + + + G Sbjct: 394 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 450 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 451 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 506 Query: 463 REGVEVIAILPNTRVLNFIPE 483 +G LP V + E Sbjct: 507 GQGSTFALYLPYQEVPKEVAE 527 >gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 581 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 2/226 (0%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F+A++SHELRTP+ I G+ E + + + E + ++ I + L NLIN+ Sbjct: 356 MRRDFVANVSHELRTPVAVIKGYGETLLDGAL-EESPERSRRFVEIIVSHAERLTNLIND 414 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS++EA L+ + L +R+ ++++ A+ K I I + + V AD+ Sbjct: 415 ILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQ 474 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV+LNLL NA+K+T GG V V R +++ D G GI ++P + F + Sbjct: 475 LEQVLLNLLDNAIKYTPDGGDVTVAARLEQER-VVVAVSDTGIGIPARDLPRIFERFYRV 533 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL I + I+ HGG+ + S+ +G LP Sbjct: 534 DEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLP 579 >gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1245 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I A+ ++ AEE AKS FLA+MSHE+RTP+NAI+G S + + + Sbjct: 408 ITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTEL----S 463 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++YI IH + LL +IN+ILD S+IEAG+ ++ L D + ++ ++A+ Sbjct: 464 RKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAR 523 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +E+ +DP++ + D+ + Q+++NL++NAVKFT G + V V + Sbjct: 524 EKGLELLIAMDPAVPDGLIGDDLRLGQILVNLVNNAVKFTDT-GEIVVRVKQVEANDREV 582 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 SI D+G G+ E ++ + SF Q + G GLGL I++ + G+ + Sbjct: 583 MLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVE 642 Query: 460 SKLREGVEVIAI 471 S G + Sbjct: 643 STPGVGSTFLFT 654 >gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 643 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 22/291 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------EN 246 L S + L+ + L+ L A + ++ E+ + Sbjct: 351 KALLSSIAEQLAIAINQSQLMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAAS 410 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 ++ FLA++SHEL TPL ++G S + +G L +EY+ IH SG+ LL +IN Sbjct: 411 RIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELT-PRQREYLQTIHDSGERLLEMIN 469 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWAD 364 +ILDLS+I+AG+ L+ SL + + L ++ + + + P AD Sbjct: 470 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 529 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q+I NLL+NA+KFT GG V + W ++D G GI E ++P V F Sbjct: 530 PGRIEQIIWNLLTNAIKFTPQGGSVTLRF-WVEDNTVIFQVEDTGIGIPEEKLPLVFEKF 588 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + +G G+GL + + ++ H G+ + S + G +P + Sbjct: 589 QQVDASYHRPYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIPRS 639 >gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 1002 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 93/411 (22%), Positives = 165/411 (40%), Gaps = 25/411 (6%) Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW--TLLTLVEP 129 + + L ++ I L+ + L+ Sbjct: 355 LGVAIGLALLAIGTVWFAIVMFDRRALRPANRRA--IRLIESEALNRTLIRTAPAGLMLL 412 Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 + + ++A +A + A S ++ Sbjct: 413 SLANGDTMVRNEAAQAYGDTDAAASLGKRIWQAYHRSIAG-----------GRAPRVVTH 461 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + A TY+ H+ ++ + + I + + E R+ A++ N AK Sbjct: 462 ELSVDLAGGGTTYLAAHIVRTRYRGVDVLLCTLTDITARKQMEDKLREAREAADDANKAK 521 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLNAI+G E++E + + + + S LL +IN++L Sbjct: 522 STFLATMSHEIRTPLNAIVGNLELMERAPL----PAEERRRLQTVMSSSDALLRVINDVL 577 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS++E+ + L L +VR+ + A +++ + +IDP L+ D + Sbjct: 578 DLSKVESNQMVLEAVPFDLRAVVRDVAAIFHPLAAARHLALECRIDPQLADGYVGDPTRL 637 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSF 424 RQ++ NL+SNA+KFT G V + T RG + ++D G GIA +PT+ + Sbjct: 638 RQIVSNLVSNAIKFTER-GSVTIEARPTGTVGQARGVEVVVRDTGIGIAPESLPTLFDVY 696 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q +I G GLGLP+ + + G + S+ +G I LP + Sbjct: 697 VQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVESRPGQGATFIVSLPLS 747 >gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1103 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + ++ + +++RAE +KS FLA+MSHE+RTP+NA++G + ++ + Sbjct: 562 ESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIRTPMNAVVGMTGLLLETDL 621 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +EY+ I G LL +IN ILD S+IE + EL L+ + E + M+ Sbjct: 622 KP----EQREYLETIRTGGNTLLAIINNILDYSKIEGEKMELEILPFDLLGCIEESMDMV 677 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A EK +EI D + + D+ +RQ+++NLL NA KFT G + +++ T Sbjct: 678 AANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNATKFTEK-GEIVLSLSTTPL 736 Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + + D G GI++ + + F Q + G GLGL I++ ++ G Sbjct: 737 DDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGGTGLGLAISRRLVEMMEG 796 Query: 455 QFLIRSKLREGVEVIAIL 472 + + S+ G + Sbjct: 797 RIWVESEKGVGSTFHFTI 814 >gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1287 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 11/254 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ E R+ AE + KS FLA+MSHE+RTPLN ++GF++++ + Sbjct: 748 RDITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLLMKTNL--- 804 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +ET ++Y+ + +S L+++IN+ILD S+IEAG+ EL+ L++I M+ + Sbjct: 805 -DETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQ 863 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 AQ+K++E+ I + VW D +RQ+++NLLSNAVKFT G + + + + Sbjct: 864 AQQKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIK-GEIELKIELLNKVSG 922 Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S++D G GI + +F Q + G GLGL I+ S++ + Sbjct: 923 LDYTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSLLGLMESRL 982 Query: 457 LIRSKLREGVEVIA 470 + S+L +G Sbjct: 983 QLTSELEKGSTFFF 996 >gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 551 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 89/279 (31%), Positives = 136/279 (48%), Gaps = 5/279 (1%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 +++ + + + Q LIA+L+ E N KS FL++MSHELR Sbjct: 258 LSHAFNRMLRNLTNIQERNRKLIADLDRKVDELARVNMALFESNRLKSEFLSTMSHELRD 317 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN+I+GFSEV+ E + Y G+I SGQ L LIN+IL+L+++EAG+ L Sbjct: 318 PLNSIIGFSEVL---IAAENLTEKQQRYAGNIMTSGQRLTALINDILELAKLEAGKMRLH 374 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + ++ +A++KNI++ DP + D + Q+I NLLSNAVKF Sbjct: 375 PEPFNAAAACEHAAAQIRPQAEKKNIDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKF 434 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T GGRV + T G +++ D G GIA E + F Q + + + G GLGL Sbjct: 435 TPEGGRVTLKAA-TDGTDLVLTVTDTGVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGL 493 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I + + GG + S+L G + R+ + Sbjct: 494 SIVRELAKLLGGDVTVHSELGRGSTFTVRI-AARLADEP 531 >gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 769 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDET---------RK 240 G + T I H K L +A DL I + ++ K + ++ Sbjct: 469 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQSKLEKQALELADLARKYADEKR 528 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE N KS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 529 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 588 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR L + L + E + ++ RA+ K++E+ +++ + Sbjct: 589 LLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIPI 648 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GRV V G +G + I D G GI + + Sbjct: 649 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHVAGGSIVLMIADTGIGIPPQSLRRL 706 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + + G GLGL IA+S++ HGG +RS L G V+ LP Sbjct: 707 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLPR 760 >gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1131 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 8/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + + RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 573 VTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 629 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K ++ I +SG LL +IN+ILD S+I+AG+ +L ++A + + V + +L A Sbjct: 630 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 688 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V +G Sbjct: 689 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIM 748 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I+D G GI ++ +V F Q + +G GLGL I ++ GG + S Sbjct: 749 ASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 808 Query: 461 KLREGVEVIAILPNT 475 + +G LP Sbjct: 809 EWGKGSVFTINLPFA 823 >gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia plymuthica] Length = 908 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 19/347 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL+ + I+ L + L V P+ ++T + LD + G + L Sbjct: 176 VFISTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFMLGEL 232 Query: 198 SFF--------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 +T +L + I ++ + + ++E+ D +KRA+E K Sbjct: 233 HMLKNGINSMAMSLTAYLEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLASMSHELRTPLN ++GF+ + M T +Y+ I RS +LL +IN++L Sbjct: 293 SEFLASMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIINDVL 348 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 D S++EAG+ L SL + + E I++L A EK +E+ + + V D + Sbjct: 349 DFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRL 408 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFG 425 +Q+I NLL NA+KFT G + V + + ++ D G GI+E + + +F Sbjct: 409 QQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELEVQIHDTGIGISERQQSQLFQAFR 468 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q +I G GLGL I Q ++ GG S+L G + Sbjct: 469 QADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515 >gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM 1740] gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes] Length = 1555 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 13/250 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHE+RTP+NAI+G + + + + PL ++Y+ I S LL LIN Sbjct: 851 QEKSNFLANMSHEIRTPMNAIIGMTYLAQQTDLTPL----QRDYLQKIEGSANALLGLIN 906 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365 +ILD S+IEAG+ E+ L ++ +++L+A EKN+E D + ++ D Sbjct: 907 DILDFSKIEAGKLEIECIDFDLHSVIEHVSTLVELKATEKNLEFVVSYDQGMNMNLHGDP 966 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + Q++ NL +NA+KFT G V + + ++D G G++ G+ + SF Sbjct: 967 LRLGQILTNLANNAIKFTHE-GEVGIYITKQELHRYRFEVRDTGIGLSPGQKEKLFRSFS 1025 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q + G GLGL I++ ++ G+ + S+ +G I + + E Sbjct: 1026 QADTSTTRQYGGTGLGLAISKQLVEMMNGRIWVESEEGKGSSFIFEI-------ELNEQE 1078 Query: 486 HESTQYKCYA 495 + + K ++ Sbjct: 1079 NAPKESKAFS 1088 >gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514] gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514] Length = 2077 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 135/291 (46%), Gaps = 23/291 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256 L K+N ++ + AE+E + ++ R+ EE + KS FLA+M Sbjct: 1607 QEELQKTNQELQEKAMLLAEQNAEVERKNTEVEQARQALEEKAKQLALTSKYKSEFLANM 1666 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L ++ + G L E+ IH SG LL+LIN+ILDLS+IE+ Sbjct: 1667 SHELRTPLNSLLILADQLAHNVEGNLT-PKQIEFSKTIHASGNDLLSLINDILDLSKIES 1725 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G L + I++ A+ K++E ++D L + D + + QVI NL Sbjct: 1726 GTVTLDIIEMRFIELQDYVRRTFNHVAESKSLEFDVELDSELPRHMLTDSQRLEQVIRNL 1785 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLT 422 LSNA KFT GG V +++ + S+ D G GI + + Sbjct: 1786 LSNAFKFTERGG-VTLSIALVTEGWSPDRETLNQARSVIAFSVSDTGIGIPPEKQQIIFE 1844 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +F Q + G GLGL I++ I GG+ + S + +G LP Sbjct: 1845 AFQQADGSTSRKYGGTGLGLAISREIARLLGGEIRLASAIGQGSTFTLYLP 1895 >gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192] gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192] Length = 651 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01] gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01] Length = 1285 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 672 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 731 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + + S+ V Sbjct: 732 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGAV 788 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V V Sbjct: 789 FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 847 Query: 392 TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + + D G GI E ++ + +F Q + G GLGL I Sbjct: 848 TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 907 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ +G + Sbjct: 908 SKRLVNLMGGDVWVTSEFGQGSKFHFT 934 >gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1022 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 156/280 (55%), Gaps = 10/280 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L ++ +L A+ + + ++ A+ N AKS FL++MSHELRTP+NAILGF++++ Sbjct: 524 LGVAVQQAELFAQTQNQAIELQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLM 583 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P ++ Y+ I+ SG+HLL LIN++L++S+IEAGR L+E +L ++R Sbjct: 584 QRDQSLP---AQHQGYMEIINHSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRR 640 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 M QL+A+ K + + + D ++ + DE +RQV++NLLSNA+KFT G+V + V Sbjct: 641 LESMFQLKAKSKGLRLRVQRDDTVPQWIRTDEHKLRQVLINLLSNAIKFT-ENGQVTLEV 699 Query: 394 GWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D GPGIA+ + + +F Q + + +G GLGL I+Q + Sbjct: 700 SGVRQGKTVNLGFKVADTGPGIAKEDRNELFQAFKQTKLGQNT-YEGTGLGLKISQKFVQ 758 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GG+ I S+L +G + + IP+ + Q Sbjct: 759 LMGGEITITSELGQGSCFKFQI-QVELTESIPDTPASNFQ 797 >gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60] Length = 919 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 25/360 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LLI++ I+ L ++ L V P+ ++T + LD + G L Sbjct: 172 VFVATLLLLISMCIALLFSYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 225 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 226 GELDMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 285 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + M + T +Y+ I RS +LL +IN Sbjct: 286 RIKSEFLANMSHELRTPLNGVIGFT----RQVMKTPLSATQIDYLHTIERSANNLLTIIN 341 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EAG+ L L + + E +L A +K +E+ + + V D Sbjct: 342 DVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDP 401 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422 ++QV+ NLL NA+KFT G + + + + + + ++ D G GI+E + + Sbjct: 402 MRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDTGIGISERQQSQLFQ 461 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q +I G GLGL I Q ++ GG S+ +G + N P Sbjct: 462 AFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHIRLELNHNAPP 521 >gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 614 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 2/232 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ +F+A++SHELRTPL I ++E + + E + ++G I + ++ Sbjct: 377 EKLEQSRRQFVANVSHELRTPLTTIKSYAEALNDGALDER--ELSERFVGVIRNETERMI 434 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ + L ++ +++ E + ++K+I +D L S W Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ NL+SNA+K+T GG + ++ IS+KD G GI + ++ + Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFD 554 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ HGG ++S+L +G V LP Sbjct: 555 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLPV 606 >gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1252 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 145/290 (50%), Gaps = 12/290 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHE 259 L + ++ E ++ LE+ + + ++ E KS FLA+MSHE Sbjct: 542 LRQQQEELKVSNEELEEQTRALEMRNKELELAKNDIEQKTEQLELSGKYKSEFLANMSHE 601 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S+ + L+ E E I++SG LL LINE+LDLS+IE+G+ Sbjct: 602 LRTPLNSLLILSKDLADNKKKNLD-EDQVESANIIYKSGHDLLVLINEVLDLSKIESGKM 660 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 ++ + L V++ I +L+A +K +++ L + D + + Q++ NL+SN Sbjct: 661 SVNLERVVLRTFVKDLISGFKLQATKKKLDLDLIYYEDLPEKIRTDPQRLDQILKNLISN 720 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GR+ + V + S+ D+G GI E + + +F Q + G Sbjct: 721 ALKFTER-GRIQLEVKRQNSDKILFSVIDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGT 779 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486 GLGL I++ + GG+ ++SK+ +G +LP R IP++ Sbjct: 780 GLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLLPIEGKRNETSIPKEET 829 >gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 496 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 157/358 (43%), Gaps = 15/358 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + + + + + IA I+ L + V+++L Sbjct: 149 LLWAAIPV--RDKDATQSVVFIHTLLQPIAERINVLYTASFYILGGVLLLAVILSLFLSR 206 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 +S +L ++ T + + + + E L A L E Sbjct: 207 SLSRPLLQMNQTAQAITRGDYSRSVP----------VRSKDEIGLLAASLNSLSQEIQEK 256 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 E + + F+A++SHELRTPL I G++E + E ++Y+ ++ Sbjct: 257 ITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEALLDGF--AETEEERQQYLNNVLEES 314 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q L L+N++LDL +E+G+ L + + L ++ + + + +K + + + Sbjct: 315 QRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAEEVW 374 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +V+AD + QV +NL+ NA++ T GG V ++ + + ++++KD+GPGI+ ++P Sbjct: 375 EAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETDK-VFVTVKDSGPGISSKDLP 433 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F + A +G GLGL I ++I+ HGG + S+ G + LP R Sbjct: 434 LIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLPVFR 491 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 12/313 (3%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + + + + L Q E D+ +L A ++ + Sbjct: 370 GRLTHVFARAEVIWESGVAVKMIGTVLDVTEQKLREQ-ELDEGKLKLRTALEEREKALQC 428 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE+ NLAKS FLA+MSHE+RTPLNAI+ S +I + Y+ I +G+ L Sbjct: 429 AEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQTPLTS----KQSNYLEKIESAGRTL 484 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 L +IN+ILD S+IEAG L A L D++ + R ++K++++ + PS + Sbjct: 485 LGVINDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQ 544 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGE 416 + D + V++NL +NA+KFT G V + V R Q+ S++D G GI+ + Sbjct: 545 MMGDPMRLGAVLINLTNNAIKFT-EHGEVVIRVDAKQQREQHYLLHFSVQDTGIGISAEQ 603 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + SF Q +I G GLGL I++ ++ GG ++S + +G +P Sbjct: 604 QKRLFQSFSQADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPLQA 663 Query: 477 VLNFIPEDNHEST 489 V P++ +T Sbjct: 664 V-EIKPDEVPSAT 675 >gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 841 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1068 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + ++ A+ N AKS FLASMSHELRTPLNAILGF++V+ + Sbjct: 579 RDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLGRNSY--- 635 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E K + I RSG+HLL+LIN+IL++S+IEAGR +E + L ++ ML+LR Sbjct: 636 LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDSLENMLRLR 695 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------- 393 A+ K +++ + + DE +RQV++NLL NA+KFT GG V + V Sbjct: 696 AEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGNAIKFTEQGG-VTLRVKTGGMMPS 754 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + I+D G GIA EI + +FGQ S QG GLGLPI+Q + G Sbjct: 755 SLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESGRNS-HQGTGLGLPISQKFVELMG 813 Query: 454 GQFLIRSKLREGVEVIA 470 G+ + S L G Sbjct: 814 GKIGVNSILGRGSIFTF 830 >gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 917 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + + I TLL + + + T ++A+ +S Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ + L + + + + + I Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + +E+ D RK A E + KS FLA+MSHE+RTPLN+ILGF+ ++ Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNSILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K++E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 651 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1322 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 9/251 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + R +AEE N AKS FLA+MSHE+RTPLN ++GF E+++ + EY+ Sbjct: 699 ELKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHTPLDS----EQAEYLST 754 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S LL ++N+ILDLS+IE+G ++ S ++L + + +A K + ++ Sbjct: 755 IKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYAKASAKGVRLYSY 814 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408 IDP + S + D + QV+ NLL+NAVKFT GG + V V + I+++D Sbjct: 815 IDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVEDT 874 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI +G+I +V F Q ++ G GLGL I+++++ ++S+ +G + Sbjct: 875 GVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKSEKGKGSKF 934 Query: 469 IAILPNTRVLN 479 L + ++ Sbjct: 935 YFELVLKKTIS 945 >gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 142/309 (45%), Gaps = 14/309 (4%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + + + A + V + E+ + A L A ++ R Sbjct: 538 TPYAAEFRVGARWLYARGRTLSGADGQPQRMVALHLDITERKAVEAALRTATRDAEAART 597 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ + NE + + I SG Sbjct: 598 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDG--DAIQNEDRRR-LELIQSSGAA 654 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N+ILD S+IEAG L L+ IV + +++ A + I +IDP+L + Sbjct: 655 LLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAIEARIDPALPT 714 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---------GRGQYISIKDNGP 410 V D +RQV+LNLL+NAVKFT G V V V G S+ D G Sbjct: 715 FVVGDAGRLRQVLLNLLNNAVKFTPE-GSVTVIVEREDAGGAPDGRPGDTVRFSVVDTGI 773 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I++ ++ GG+ + S+ G Sbjct: 774 GIAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESREGAGSTFWF 833 Query: 471 ILPNTRVLN 479 L R Sbjct: 834 RLVLPRAEQ 842 >gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19] gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Hist [Brucella melitensis biovar Abortus 2308] gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19] gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038] Length = 783 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARAH 781 >gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 783 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 501 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 560 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 620 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 679 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 738 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 781 >gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 765 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 18/352 (5%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + L + V V +L I + A LA + + Sbjct: 1 MTAQAGGLRAWSALATVAALTVAVGASLQWSDIQGPWRALTASASALAVVFALCATVAAQ 60 Query: 207 LFKSNVKIL-----SCQAEKDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSH 258 + L + ++ L EL+ + ++ AE LAK FLA+MSH Sbjct: 61 RSARTQQGLVQRLGEAELARERLQQELQRHGELEQELLRAKQAAEAATLAKGEFLATMSH 120 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN I+ E+I + ++ + S LL ++++ILD S++EA + Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 EL + +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAESRQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIG 236 Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + + + ++D G GIA + + SF Q + Sbjct: 237 NAIKFTER-GSIDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVIGDLQQST 347 >gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] Length = 769 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 487 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 545 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 546 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 605 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 606 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 664 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 665 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 723 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 724 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 767 >gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 637 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 11/261 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I Sbjct: 258 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 314 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+E+ D + QV+ N LSNA+K T G + + + G Sbjct: 374 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGSWLK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 431 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 486 Query: 463 REGVEVIAILPNTRVLNFIPE 483 +G LP V + E Sbjct: 487 GQGSTFALYLPYQEVPKEVAE 507 >gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] Length = 1319 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE+ N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 708 EMDELKRKINKMVSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQ 767 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 768 LTLDTD---DLKPYPREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 824 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 825 FNALKTLAVKANEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 883 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 884 TISKSEREQCARDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 943 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 944 SKRLVNLMGGDVWVTSEYGHGSTFHFT 970 >gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 985 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 103/488 (21%), Positives = 186/488 (38%), Gaps = 27/488 (5%) Query: 13 GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72 G LI+ DH + R V S ++ + +I Sbjct: 264 GKLIAKALDHAREPSGEHVTAHRVGARFVVSDRMPESDLVLMGTFSWRSIVAAIAVPAGA 323 Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 + L A ++ + L+ + Sbjct: 324 T--AGTALVAIALLWLAIMLFDRRALRPANRRA--MRLIESEALNRTLI---------RA 370 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 P + + A +S + + + + A A ++ Sbjct: 371 APTGIMLLSLADGETMVSNDTMREYEQAASEPPLGKRIWQAYRDSARGPGAPRVMTHELA 430 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + A TY+ ++ ++ + + + + + E R+ AE+ N AKS F Sbjct: 431 VELADHGSTYLAANVVRTRYRGVDVLLCTLLDVTARKRTELKLREAREAAEDANRAKSTF 490 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLNAI+G E++ ++ P + + I S LL +IN++LDLS Sbjct: 491 LATMSHEIRTPLNAIIGNLELMARASLPPSE----RRRLKTIASSSDALLRVINDVLDLS 546 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 + E+ + L L D++R+ + + A K++ + ++ L+ D +RQ+ Sbjct: 547 KAESNQMALECIPFDLRDLLRDVAAIFRPVADAKHLTLDCRMAADLADGYLGDPTRLRQL 606 Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGS 428 + NL+ NA+KFT GG + V + + I+++D G GI E +P + + Q Sbjct: 607 VSNLVGNAIKFTKRGGVTIDARVATDAAGARRVAIAVRDTGIGIPEDALPNLFDVYMQAD 666 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT------RVLNFIP 482 +I G GLGLP+ I G+ + S++ EG +A LP R P Sbjct: 667 PSIYRRFGGTGLGLPLCGRIARLMHGELTVESRVDEGTTFVAALPLPEAPAGWRDAFAEP 726 Query: 483 EDNHESTQ 490 + +S Q Sbjct: 727 DAAPDSEQ 734 >gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] Length = 456 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298 +R E +S F+A++SHELRTPL +I GF E + G ++N ++ ++ I Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 275 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L LIN+IL LS IE + + I L + + + + ++ A+ KNI + + ++ + Sbjct: 276 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 335 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + ++ Q+++NL+ N +K+T GG V V+ G I+++DNG GI++ IP Sbjct: 336 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIITVEDNGIGISKENIP 394 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ G + I Sbjct: 395 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448 >gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 453 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 7/239 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R++ E ++ F+A++SHELRTPL +I GF E + + + ++ I Sbjct: 222 ERRKLE---RMRTEFVANVSHELRTPLTSINGFVETLLDGAI--EEPIIARNFLEIISAE 276 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ L N+I+++L LSR+E R +L++ + L +++ I M + RA EKNI+I +I P Sbjct: 277 GKRLANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPK 336 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V D+ + QV++NL+ NA+K+T GG VH++V + + +++ D G GI I Sbjct: 337 LPLVPGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKF-NEHEVTVTVSDTGIGIPIESI 395 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 P V F + A G GLGL I + IM HGG+ + S G + LP Sbjct: 396 PRVFERFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDS-SGSQFSFSLPLKE 453 >gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587] gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587] Length = 984 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1727 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 32/279 (11%) Query: 210 SNVKILSCQAEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 S V + QA+ + + +E R AE + AKS FLA+MSHE+RTP+N Sbjct: 944 SQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMN 1003 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A++G + ++ + N ++++ I SG LL +IN+ILD S+IE+G+ EL Sbjct: 1004 AVIGMTGLLLDMNL----NPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQP 1059 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384 L + E + +L RA EK +E+ +DP+ V D +RQV++NLLSNAVKFT Sbjct: 1060 FKLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTN 1119 Query: 385 IGGRVH--------------VTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVL 421 G + ++ + ++KD G GI + + Sbjct: 1120 QGEVIVSVTSSLIQDSAQSLISSEEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLF 1179 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +F Q + G GLGL I+Q + GG+ + S Sbjct: 1180 KAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1218 >gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 770 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 163/282 (57%), Gaps = 9/282 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSD------ETRKRAEEENLAKSRF 252 L + ++++ A+ LE A+ L++ E R +AE+ N AKS F Sbjct: 474 MKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEERNKAEDANRAKSEF 533 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAI+GFSE++E GPL +E Y EY DI SG +LL++IN+ILD+S Sbjct: 534 LANMSHELRTPLNAIIGFSEIMESGMFGPLGSEKYAEYCTDIKGSGTYLLDVINDILDMS 593 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IEAGR +L ++L DI+ + + + + EKNI + P+L ++ D + ++Q++ Sbjct: 594 KIEAGRMQLEVEDLALDDIIADALRVTAVNGDEKNIAMTMAAAPNL-AIKGDRRALKQIL 652 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNLLSNAVKFT GG + V +G I+I+D G GIA+ + + F Q Sbjct: 653 LNLLSNAVKFTPEGGNIAVKA-RINGAAAVIAIEDTGIGIAKDALARIGRPFEQVESQFT 711 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL IA+S++ HGG IRS G VI LP Sbjct: 712 KTHKGSGLGLAIAKSLVELHGGAMRIRSVEGRGTTVIVRLPV 753 >gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] Length = 791 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 L++ L +AL +L V P+ + + L+I + G Sbjct: 184 ITTSIILLILCLGGTALFAHILVRKV---TQPLGGMVRVVEQIRQGQLNIRVTG---AMP 237 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + E I +LE+ +KRA+E Sbjct: 238 GELAALQNGINTVAESLSKYKDEMQLHIDQATSDLQITMEQLEIQNVELTLAKKRAQEAV 297 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ FLA+MSHELRTPLN ++GF+ + + EY+ I RS +LL +IN Sbjct: 298 KIKTEFLANMSHELRTPLNGVIGFTRQMLKTPITS----QQAEYLYVIERSANNLLKIIN 353 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADE 365 +ILD SR+E+ + L + L D V E I +L A EKN+ + +ID L ++ D Sbjct: 354 DILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEKNLPLQHRIDDKLPNLMIGDP 413 Query: 366 KGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 ++Q++ NL+ NA+KFT G + V + I +I D G GI P + Sbjct: 414 IRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQIDFTITDTGIGIKPEYRPILFQ 473 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ G+ S+ +G L Sbjct: 474 AFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEPAKGTVFYFDL 523 >gi|91776115|ref|YP_545871.1| periplasmic sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710102|gb|ABE50030.1| periplasmic sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1146 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 183/349 (52%), Gaps = 10/349 (2%) Query: 144 TLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 LL+A++++ LS F L Y F + ++ + ++ ++++ Sbjct: 586 LLLMAVTLAFLSALFGLIYFHESLTFTGEKEALLPELRLGYLKVFAALAFVSGIIAWWIV 645 Query: 203 ITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 +T + + + Q I + + R+ AE+ N AKSR++ +SHELR Sbjct: 646 LTSESRRVAQEESNRQTNLLQREIVLHKQTDAELQRARQVAEQANQAKSRYITGISHELR 705 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+ILG++++++ P E ++ I I RSG+HLL+LI LD++RIE+G+ Sbjct: 706 TPLNSILGYAQLLDN---DPSIPENRRQSIRVIRRSGEHLLSLIEGTLDIARIESGKLTF 762 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + + +++ + M +L+A+ K I+ ++ L V D+K + Q+++N+L NAV Sbjct: 763 DLRLVRFPEFIQQLVSMFELQARNKGIDFKYELRGELPKVVRIDQKRLSQILINILGNAV 822 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG V + + + +ISI+D GPGIA EI V F +GS A KS G GL Sbjct: 823 KFTRHGG-VSFKLRY-AREMLHISIEDTGPGIAPEEIEKVFEPFARGSAAAKSNIGGTGL 880 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GL I++ + GGQ +RS L +G + L ++V +PE+ ++ Sbjct: 881 GLTISKMLTELMGGQLTVRSTLGQGSQFNIRLFLSQV--RVPEEIENAS 927 >gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 887 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 134/265 (50%), Gaps = 12/265 (4%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L+ + I + + TR++AE N AKS F+A+MSHE+RTPLN ++GFS ++ Sbjct: 337 LTGRIIVLRNITSRKQIEYDLIATREKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLL 396 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 T+ ++ YI ++ S + LL LIN+ILDLS+IEAG+ EL ISL ++ E Sbjct: 397 MKTTL----DDVQFHYINTVNNSAKQLLGLINDILDLSKIEAGKLELYNEMISLQELAEE 452 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 I M A KN+E+ I SL AD ++Q+++NLL NAVKFT GG + + + Sbjct: 453 VIDMTAFTAHSKNLELLLDIPSSLPESALADPVCLKQILINLLGNAVKFT-SGGEIELKI 511 Query: 394 GWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 S++D G GI+ + +F Q ++ G GLGL I+ Sbjct: 512 ETVPSDNDPDYLVFIFSVRDTGIGISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNK 571 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 ++ G + S +G L Sbjct: 572 LLLLMGSCLQLESSPGQGSRFFFSL 596 >gi|296810904|ref|XP_002845790.1| DRK1 histidine kinase [Arthroderma otae CBS 113480] gi|238843178|gb|EEQ32840.1| DRK1 histidine kinase [Arthroderma otae CBS 113480] Length = 1309 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 683 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 742 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 743 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 799 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 800 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 858 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 859 KHVPPPPAEGEPEREVCAEDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 918 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 919 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 952 >gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 841 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 130/259 (50%), Gaps = 8/259 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + I +++ + E RAE N AKS FLA+MSHE+RTP+N ++G ++++ Sbjct: 302 RVGLRVDITQIKEDQQRLKEATIRAEAANRAKSAFLANMSHEIRTPMNGVVGMADLLRET 361 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + N+ K Y I SG+ LL +IN+ILD S+IEA + L+ L + + ++ Sbjct: 362 EL----NDEQKLYADTIRSSGEALLVIINDILDYSKIEAEKLVLNPEPFDLERAIHDVVM 417 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +LQ A++K+I + D L D +RQ++ NL+ NAVKFT G + VG Sbjct: 418 LLQPTARDKDITLLVDYDMFLPTHFVGDPGRVRQILTNLVGNAVKFTVQGYVLVRVVGVM 477 Query: 397 SGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 G +I+++D G GI ++ V F Q +G GLGL I + ++ G Sbjct: 478 EDGGSTAVHITVEDTGIGIPADKVEHVFGEFNQVEDERNRKFEGTGLGLAITRRLVELMG 537 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S+ G + Sbjct: 538 GEVWVESEPGRGSFFGLRI 556 >gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 592 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 6/239 (2%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R + EE KS F+A++SHELRTP+ + G+SE I + E + I I+ Sbjct: 356 RDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVT--TEEERIDMIRVIYD 413 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 Q + L+ ++LDL+R+E+G L + + L+ ++ A+EK++++ + D Sbjct: 414 ESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETDF 473 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 + + DE + QV+ NL+ NA++ T G V V++ I + D G GI + Sbjct: 474 SDETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSM-INEQNYAKIQVSDTGQGIPQD 532 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++P V F + A ++ G GLGL I ++I+ H G+ + S ++G LP Sbjct: 533 DLPYVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTFYLPL 591 >gi|317150360|ref|XP_001823967.2| histidine kinase J7 [Aspergillus oryzae RIB40] Length = 1304 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 689 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 748 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 749 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 805 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 806 FNALKTLAVKANEKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFT-EHGEVKL 864 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 865 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 924 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 925 SKRLVNLMGGDVWVTSEYGHGSTFHFT 951 >gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 614 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 12/331 (3%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 L N ++ F++F ++VA+ I++ ++ + + + Sbjct: 288 LMNSVIRKIFFIAFSSLIVAVLVAFILNRKIVVPIKKLKNSAEIFGHGKYDERVSLKTGD 347 Query: 214 ILSCQAE-----KDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLN 265 L AE D++ + K +DE + +E + KS L+ +SHELRTPL Sbjct: 348 ELEELAESFNKMADEISRADKKLKKDADELKNSYDELKEVDNLKSELLSIVSHELRTPLT 407 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I G+ ++++ ET G L N+ E+I I + L LI+ +LDL ++E + + Sbjct: 408 SIRGYVDLLKDETAGKL-NDKQHEFILIISENSDRLKRLIDNMLDLVKVENEVLDFKFNK 466 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +++ + V E I L+ A KNI + + +D + D+ + QV+ NL+ NA+KF+ Sbjct: 467 LNIKNTVGEIISSLKYFADSKNIILLEDVDE--VYIKGDKSKINQVLANLIENAIKFSKN 524 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V V +G+ ++ I D GPGI + + + F Q + K G GLGL + Sbjct: 525 QTKVTV-IGFEDKENLHLEITDQGPGIPKENLEKIFEKFYQIDSSSKREIGGSGLGLAVC 583 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + I+ +HGG + SK+ +G V +LP + Sbjct: 584 KKIVESHGGSIWVESKVGKGTSVHILLPIAK 614 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 12/335 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + + + ++ +L + + T + + + + A+ F + Sbjct: 579 VLVEVMRTAHPLLVTRRGMRLTGLTWPGRTPEVWLGVPIRVRQEVLGVMAVMHFA-DSGR 637 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 K +L AE+ L E ++ A+ N AKSRFLASMSHE+RTP+NA Sbjct: 638 YGKKEADLLLSVAEQLALGVERRRNLDALRAAKEEADRANQAKSRFLASMSHEIRTPMNA 697 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG ++V + P ++Y+ + S +HLL ++N+ILD S+IEA + EL Sbjct: 698 ILGLTDVTLRTELTP----EQRDYLETVQDSARHLLGILNDILDFSKIEARQMELEVVDY 753 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ R + L + A+ K + + I P + V D +RQ+++NL+ NAVKFTA Sbjct: 754 DLHELARSVVKTLGVSARTKGLWLSLDITPGVPRHVRGDPGKVRQILVNLVGNAVKFTAA 813 Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG V + + +++ D G GI + + SF Q + G GL Sbjct: 814 GG-VSLRLAHAEAHPDTPPHLELAVADTGIGIEPSLLSAIFESFRQADNSTARRYGGTGL 872 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GL I++ + GG + S G + +P Sbjct: 873 GLAISREMAQLMGGDITVESVPGNGSRFVLSIPFE 907 >gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 582 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F+A++SHEL+TP+ +I GF+E + M + + ++ I + + Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ E+LDLS+IE ++L + + ++ E + + +A EK I++ + L Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D M+Q++LNLL+NA+ +T GRV V T + I +KD G GI E EIP + Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETE-KEVLIHVKDTGIGIEEKEIPRI 525 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G + SK+ G P Sbjct: 526 FERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 456 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F+A++SHELRTPL +I GF E + + N E +++ I + Sbjct: 222 RRLE---KIRNEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + L + + + + ++ A+ KNI + + ++ Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGL 336 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++ Q+++NL+ N +K+T GG V V+ G I +KDNG GI++ IP Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVKDNGIGISKENIPR 395 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ +G + I Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEIGKGTKFIMKF 448 >gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] Length = 573 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 14/267 (5%) Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + ++L A +E R AE+ + AKS FLA+MSHE+RTP+N +LG + ++ Sbjct: 21 EQRTSQLRQANLRLNEEVVNHAQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 80 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + P+ K Y I+RSG+ LL ++N++LD S+IEAG E+ L +V + Sbjct: 81 MDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVED 136 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 ++ RAQEK + I+ +S W D + QV+ NL+ NA+KFT G ++V+ Sbjct: 137 TFQLMNSRAQEKQLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVS 196 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + + D G GI++ + T+ +F Q + G GLGL I++ I+ Sbjct: 197 LNPEDESQVLFEVSDTGIGISKKDQKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAM 255 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLN 479 GG + S+ EG +P Sbjct: 256 GGVLEVDSEEGEGSRFWFSIPLEESEP 282 >gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] Length = 657 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 15/265 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I Sbjct: 278 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 333 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +EY+ I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 334 GEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 393 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+E+ D + QV+ N LSNA+K T G + + + G Sbjct: 394 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLK 450 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 451 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 506 Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487 +G LP IP++ E Sbjct: 507 GQGSVFALYLP----YQEIPKEVVE 527 >gi|327296313|ref|XP_003232851.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892] gi|326465162|gb|EGD90615.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892] Length = 1321 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 754 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 810 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 811 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 869 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 870 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 929 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 930 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 963 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 88/272 (32%), Positives = 147/272 (54%), Gaps = 10/272 (3%) Query: 206 HLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ L + D + +L+ A ++E +RA+E N AK++FLA+MSHE+RTP Sbjct: 129 RHHRDHLDELVQERTNDIARINEKLKSAIIKANELARRADEANQAKTQFLANMSHEIRTP 188 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ++GF+E++E + +E ++++ I RSG+ LL LIN++LD S+IEAG + L+E Sbjct: 189 MNGVIGFTEMLEETNL----DEAQRDFVATIKRSGESLLTLINDVLDFSKIEAGEFTLNE 244 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 S IV E +++ R +K ++I I ++ V DE+ RQ+++NL+ NA +F Sbjct: 245 VDFSPELIVHEVSELIRPRIGKKPVKISSVISGNMPSRVKGDEQRFRQILINLMGNAQRF 304 Query: 383 TAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G + +++ + + SI+D G GIAE ++ T+ F Q G G Sbjct: 305 TDSGEIEIQLSIDEETSDQVLVHTSIRDTGIGIAERDLKTIFEPFRQSDGTSTRKYGGTG 364 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 LGL I + + G SKL EG Sbjct: 365 LGLSICKQLSNMMRGDVWAESKLFEGSTFHFT 396 >gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB] gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB] Length = 955 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 135/274 (49%), Gaps = 5/274 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I++ + + + ++ A+ N +KS FLA+MSHELRTPLNAI+G+SE+++ E Sbjct: 413 ESLRDISDRKATEVALQQAKEAADAANRSKSAFLANMSHELRTPLNAIIGYSELLQEEAE 472 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N + + IH +G+HLL LIN+ILDLS+IEA + EL S+ +++ + + Sbjct: 473 EAGVN-HFISALDRIHSAGKHLLGLINDILDLSKIEASKIELYPETFSVSEMIESIVKIA 531 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 ++ + K + + AD +RQ + NLLSNA KFT G + +TV T Sbjct: 532 DPLVKKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNAAKFT-TSGVITLTVSRTQEA 590 Query: 400 GQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 Q S+ D G G+ ++ + +F Q + G GLGL I ++ GG Sbjct: 591 EQEWMNFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGGTGLGLTITRNFCRLMGGDI 650 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ +G +P + +T Sbjct: 651 TVESEYGKGSLFTIRIPAVTAAGPAEAEEMPATD 684 >gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 651 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 10/279 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + I + + E ++ AE N+ KS FLA+MSH Sbjct: 672 WLLSRGRVVEFTADNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSH 731 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G ++ E + P ++Y+ S Q LL +IN+ILD S+IEAG+ Sbjct: 732 EIRTPMNAIIGMLQLAERTELTP----KQRDYLEKAGFSAQSLLRIINDILDFSKIEAGK 787 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 EL A L ++ + + L++Q+K +E+ + + D + QV++N+LS Sbjct: 788 LELERVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLS 847 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + R I+ ++D G GI++ + ++ +F Q + Sbjct: 848 NAVKFTQT-GEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTR 906 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ +++ GGQ ++S++ G + Sbjct: 907 KYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945 >gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1200 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RTP+NAI+G ++ + ++ P Sbjct: 667 ITRHKSNEVAMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP--- 723 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ S Q LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 724 -QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQ 782 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K +E+ + + D + QV++N+LSNAVKFT G + + R I Sbjct: 783 QKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 841 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI++ + ++ +F Q + G GLGL I++ +++ GG+ ++ Sbjct: 842 TLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQ 901 Query: 460 SKLREGVEVIAIL 472 S++ G + Sbjct: 902 SEMGVGSTFSFTI 914 >gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 651 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1002 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 173/466 (37%), Gaps = 30/466 (6%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLA 81 + + + LF +S +P V + + +A Sbjct: 301 AAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAFTLRSLVAAVGLQAGWYVAVMVA 360 Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 +L + + ++ + P + + Sbjct: 361 ALVLVWALLVLFDRRVLIPDDAR--TRRVVESENLNRTI---------VEAAPSGIALLS 409 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALS 198 A + L + + A S ++A S A L ++L + Sbjct: 410 LADGAVLLQNDTMRAYDARIAAAPSLAARLLARFDASPGASAWQSDLHVTLPTGGDETVD 469 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + ++ +L ++ I + + DE + A+ N AKS FLA+MSH Sbjct: 470 LLVNLVRTRYRDADVVLCNFSD----ITSQKNIERKLDEALRAADAANDAKSAFLATMSH 525 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAILG E+I E + +T +E + + + LLNLI++ILDLS+IEAG+ Sbjct: 526 EIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASSVLLNLISDILDLSKIEAGQ 581 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 + L + + + M + A K ++ +D +L+ D +RQ+ NL+ Sbjct: 582 MTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVG 641 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G V++ I + D G G+ + + + F Q +I Sbjct: 642 NAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRR 701 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL + + + G ++S EG + LP + Sbjct: 702 YGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPLRAATDA 747 >gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 651 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I + + D E E A R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 IGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E EY S +HLL +IN+ILD SRIE G EL Sbjct: 284 VLGMLQLLETT----EQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L+++V+ ++ Q AQ++ + + +I L V D +RQ+++NLL NA+KFT Sbjct: 340 NLLELVQGSALVFQHSAQQRGLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +H+++ W + + ++ D+G GI+ + + +F Q +I G GL Sbjct: 400 E-GAIHLSLEWQALDHDVLWLTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL IA+++ GG SK G +P Sbjct: 459 GLAIARTLAERMGGTLQAESKEGSGSTFTLEIPL 492 >gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 789 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 6/275 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ + + + + ++ L + + ++ A+ N AKS FLA MSH Sbjct: 276 FLLGISRDITEHKLAEAELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSH 335 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAILG++++++ + ++ + I RSG+HLL LIN+ILD+++IEAGR Sbjct: 336 ELRTPLNAILGYAQILK---LDTTLDQRQINGLTVIQRSGEHLLMLINDILDIAKIEAGR 392 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL+ S +SL +V ++++A EK + ++ P L + V DE +RQ +LNLLS Sbjct: 393 MELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVDEIRLRQALLNLLS 452 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA++FT G V ++V +T ++D G GI EG + + F Q S G Sbjct: 453 NAIRFTEQ-GSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFEQVSDERHR-FGG 510 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I++ ++ GG+ + S+ G +L Sbjct: 511 TGLGLAISRQLVRLMGGEIHVESRRDIGSTFSIVL 545 >gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 863 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 94/326 (28%), Positives = 141/326 (43%), Gaps = 14/326 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 P+ V F V QA + + AG ++ IL Sbjct: 392 FPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLA 451 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + E A+ + AE N AKS FLA+MSHE+RTPLN +LG ++++ Sbjct: 452 GVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTA 511 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 N+ KEY+ +S L L+++ILD+SRIEAGR ++ E ++ + + Sbjct: 512 ----PNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKEL 567 Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394 L A+ K + + L + DE +RQ++ NL+ NAVKFT G++ + Sbjct: 568 FALEARRKGLVLEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEK-GKIRIDASLLP 626 Query: 395 -----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +S I++ D G GI E I + F Q + QG GLGL I + ++ Sbjct: 627 LLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLV 686 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475 GG I S L EG V LP Sbjct: 687 NLLGGDIAIDSTLGEGTTVYLSLPLK 712 >gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] Length = 917 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 19/380 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + L ++ LLIA+ + + L + ++ + + Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPIGQIKQAVAQ 207 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231 + ++ + I Q D ++ Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+ Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYL 323 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S +LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELV 383 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407 + ++ D ++Q++ NL+SNA+KFT G V + IS++D Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 TGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503 Query: 468 VIAI--LPNTR-VLNFIPED 484 LP TR + +P Sbjct: 504 FWISLNLPKTRDDVEDLPSA 523 >gi|75908367|ref|YP_322663.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702092|gb|ABA21768.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 937 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 175/395 (44%), Gaps = 28/395 (7%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + +V W+ L GL W ++ +V + + T ++ LL ++ Sbjct: 322 LRHERHFVQVRPWKDKL-------GLDWLVIVVVPESDFMAQINTNNRTTVLLCLGALII 374 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + + +++ V + ++ AI S ++ L T + Sbjct: 375 ATAMGVYTSRWIARPVVQLTQASSAIASGNLDQEVTISGLKELSMLATSFNQMAGQLRDS 434 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + +L + + ++ A+ N AKS FLA+MSHELRTPLN ILG++++ Sbjct: 435 FAELEKTNQELENRVAERTAEITAAKETADAANRAKSEFLANMSHELRTPLNGILGYAQI 494 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ M ++ + + I+ G HLL LIN+ILD+++IEA + EL L ++ Sbjct: 495 LQ---MDSNTSDEQMQGLNTIYECGSHLLTLINDILDIAKIEAKKLELYPKEFDLRKLLL 551 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 M +++A +K + ++ + + ++ADEK +RQV++N+LSNA+KFT G V Sbjct: 552 GACEMCRIKADQKELIFKYHLNNRIPANIFADEKRIRQVLINILSNAIKFT-DHGTVTFD 610 Query: 393 VGWTSG---------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 V + I+D G G+ + ++ + F Q + +G Sbjct: 611 VEVVACTGTKLITNTNQLLPVHQLRFHIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEG 669 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I+ I+ G + S +G + L Sbjct: 670 TGLGLAISSQILELMGSDLKVESVYGKGTKFWFDL 704 >gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 497 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 106/428 (24%), Positives = 178/428 (41%), Gaps = 22/428 (5%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS---------DIKIG 101 L + +N G + P + ++++ T + ++ S Sbjct: 38 FAMLLTQVTSNAGDYTRSGPPWVLFAVGTGMAFMGLRYNKIRLARSAFFFSIVGTPTISL 97 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + + + + + + +T L + + +A + + +++ Sbjct: 98 FLLPGTTQFMSYSLVLAVIIAGILYSPRAPFTVVALVVVIFLMVGMASATNFTNHYGSIT 157 Query: 162 AVFLSFFPVVVALSTQAIMSM--HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 +F P V L A+ S ++ + L S ++ Sbjct: 158 QFITTFTPPSVTLLLAALTSWLATRDLVATVEWAMESHRLAERRAERLRVSEARVARTLL 217 Query: 220 EKD-------DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 E + L ++L+V + R A+E N K+RFLA+MSHELRTPLNAI+ F++ Sbjct: 218 ELEGAYEMQSRLNSQLQVLNKELEVARTAADEANTLKTRFLANMSHELRTPLNAIINFTQ 277 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + G L E + + +HLL LIN+ILDLS+IEAGR EL + L I Sbjct: 278 FLGKPRYGDLT-ARQIELQERVLVNSEHLLGLINDILDLSKIEAGRMELHLELLDLQPIF 336 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + K + + ++ + V D+ +RQ++LNLLSNA KFT GG + + Sbjct: 337 NGVMATAVGLTKSKGLNLESDVEEEIPPVRGDKVRVRQILLNLLSNAAKFTDSGG-ITLR 395 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMAN 451 + S IS+ D G GI E+P V F Q A +QG GLGLPI++ ++ Sbjct: 396 A-FESDGMVQISVIDTGAGIPAHELPLVFEEFHQVEQAASAQRQQGTGLGLPISRHLVEL 454 Query: 452 HGGQFLIR 459 GG Sbjct: 455 QGGTMWAE 462 >gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1013 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 8/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ R +A E KS FLA+MSHE+RTP+N ++G + ++ + P Sbjct: 461 ITDRKRAEEALALARDQAMEAARLKSEFLATMSHEIRTPMNGVIGMTNLLLESALTP--- 517 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + SG HLL +IN+ILD S+IEAGR L ++ + + ++ +A+ Sbjct: 518 -EQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDFDFRGMIDDTLDLIAEQAR 576 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402 +K +++ ID S+ +V D +RQV++NLL NA+KFT G V +TV + Sbjct: 577 QKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDRGEVVLRMTVAQDAQSHVV 636 Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + + D G GI+ + +F Q + G GLGL I + + G+ + S Sbjct: 637 LRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGLAICKRLTELMQGEIGMES 696 Query: 461 KLREGVEVIAI 471 +G Sbjct: 697 APGKGSRFWFT 707 >gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] Length = 933 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 88/272 (32%), Positives = 144/272 (52%), Gaps = 9/272 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K ++ +K + + + E + + + A+ N AKS FLA MSH++RTP+NA Sbjct: 509 VTKVIFANMNINEQKLEEMEQEEQNRKVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNA 568 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S + + P + K+ + I+ S +HLL LINEILD+S+IE G+ L+E Sbjct: 569 IIGMSSIAASQINNP---QKVKDCLEKINLSSKHLLALINEILDMSKIEKGKIALAEEPF 625 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L +++ + M++ A EKN E+ I D + + D +RQV+LNL+SNA+K+T Sbjct: 626 CLSEVIEDISAMVRTEAAEKNHELTVIIKDIEHNILIGDAGRIRQVLLNLISNAIKYTLN 685 Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG + +TV SG +++DNG G+ E + + F + QG GL Sbjct: 686 GGEILLTVQEVSGKISGYGSFVFTVEDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGL 745 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G+ I+Q I+A G + S+ +G + L Sbjct: 746 GMSISQKIVAAMQGNIQVESEKGKGSRFVVTL 777 >gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 977 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 134/300 (44%), Gaps = 21/300 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMS 257 L + + +D L + + E N AKS FLA+MS Sbjct: 243 EMLSQIEAQDRELLKSRDTLEDTVAIRTEELQRMVADLEVARDAANAANRAKSEFLANMS 302 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +E++ +G L N +++ I SG+ LL +IN+ILD S+IEAG Sbjct: 303 HEIRTPMNGVLGMTELL----LGTLLNGKQRQFAETIRNSGEALLAIINDILDFSKIEAG 358 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + EL + + +++ + + A +K +E+ I P + V D +RQV+LNL Sbjct: 359 KIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPARLRQVVLNLA 418 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 SNAVKFT G + ++ ++D G GI+ + + F Q ++ Sbjct: 419 SNAVKFTDQ-GEIVISADVAESGQDNILIRFLVRDTGIGISPESLEKIFEGFAQADGSMT 477 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVLNFIPEDNHES 488 G GLGL I + + GG + S G LP T +P HE+ Sbjct: 478 RRYGGTGLGLTIVRQLAGLMGGTTRVESTPDVGSCFSFTARFDLPATLQQAALPSSAHEA 537 >gi|70989279|ref|XP_749489.1| two-component osmosensing histidine kinase (Bos1) [Aspergillus fumigatus Af293] gi|66847120|gb|EAL87451.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus fumigatus Af293] gi|159128901|gb|EDP54015.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus fumigatus A1163] Length = 1337 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 726 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 785 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 786 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 842 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 843 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 901 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 902 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 961 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 962 SKRLVNLMGGDVWVTSEYGHGSTFHFT 988 >gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon GZfos17A3] Length = 424 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 143/268 (53%), Gaps = 6/268 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + EK L+ ELE + + + EE K+ FL+ SHELRTPL + + Sbjct: 153 RAEDEKRRLMEELETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQ 212 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ MG L+ + ++ I + R+ L NLI +ILD+SRIEAGR +LS ++++L D V Sbjct: 213 MLQEGYMGKLD-KKQEKSIEVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAV 271 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +E I M + A+ KNIEI K+ + ++ D + +RQ I NLL+NA+KF+ G+V + Sbjct: 272 KEAIKMQEAFAKGKNIEIRAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIE 330 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G+ SI D G GI++ + + F Q ++ G GLGL I + I+ H Sbjct: 331 TKRL-GKNVRFSITDYGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAH 389 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNF 480 G+ S+L +G ++P + + Sbjct: 390 NGKIWAESELGKGSTFYFVIPTKQKITE 417 >gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1149 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 101/473 (21%), Positives = 189/473 (39%), Gaps = 29/473 (6%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 + + V L P P+K D +++++L V + ++ L + Sbjct: 285 RRQPVALSNLPMRQRRRQNQPAKSDP-QDLVSLLVVPVLVHDELIGTIGLSSTEAHLFTA 343 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW--LLVGQIAIGLCWTLLT 125 ++ T+ NL L + + + + V V I + Sbjct: 344 EDIALAQRLSTTIGQALTNLRLNEALQSELNERMRVEEALRQSSARVTSILESIADAFFA 403 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 + +++ + A L+ ++L + + + L TQA+ S+ + Sbjct: 404 V----DMEWKFVYVNDEAARLLGQPTTSLIGQSIWDSAADRVGLLYAELYTQAMESLKPI 459 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 ++ ++ + + A + A++ E ++ AE Sbjct: 460 RDE-----VYFAPLDVWLAMRIYPWSDGL----AIYIQDVTAAHAAQAALIEAKEAAEHA 510 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 A+S FLA+MSHE+RTP+N ++G + ++ + NE +EY I SG+ LL +I Sbjct: 511 TRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPL----NERQREYAETIRSSGESLLTII 566 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-D 364 N+ILDLS+IE+GR EL + + + V + ++ A K +++ I + + D Sbjct: 567 NDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADVPMMLISD 626 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIKDNGPGIAEGEI 417 +RQ+++NLL NAVKFT G V + V I ++D G GI ++ Sbjct: 627 VTRLRQILVNLLGNAVKFT-EHGEVTLQVSRYPDFDLEADQVHLVIEVRDTGIGIPPDKL 685 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + +F Q + G GLGL I + + GG + S +G Sbjct: 686 DRLFRAFSQVDASTTRTYGGTGLGLVICKRLSEMLGGGISVESAPGQGSTFRV 738 >gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato Max13] gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato K40] gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] Length = 917 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + + I TLL + + + T ++A+ +S Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ + L + + + + + I Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + +E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K++E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] Length = 917 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + + I TLL + + + T ++A+ +S Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ + L + + + + + I Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + +E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K++E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|83776228|dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae] Length = 1134 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + R+ AE N +KS FLA+MSHE+RTP+N I+G ++ Sbjct: 587 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 646 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + P +E + +H G LL +I++ILD+S+IEA ++ SL V Sbjct: 647 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 703 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +L + A E+++ + I+ S+ V D +RQ+ILNL+ NA+KFT G++ + Sbjct: 704 FKALKILAVEASERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQL 762 Query: 392 TVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 T+ S+ D G GI + ++ + F Q ++ G GLGL I+ Sbjct: 763 TIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSIS 822 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG + S + G Sbjct: 823 KKLVNLMGGDIWVTSAVGVGSTFHFT 848 >gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 798 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARAH 796 >gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 589 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L I++ + + + I A+EKNI + I + Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISLTEEEFMF 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T+ GG V ++V I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ H G + S++ +G +P R Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTKR 589 >gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 800 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 10/295 (3%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L F + ++ + E + L +L+ A + +++ AE N AKS FLA Sbjct: 234 GGLLFSSKEAQSAPQALDTYEEVKQETEQLYQQLDQAIAKANQAALEAELANQAKSSFLA 293 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SMSHE+RTP+NA++G + V+ + ++ ++Y+ I SG LL LIN+ILD S+I Sbjct: 294 SMSHEIRTPMNAVIGLTGVLLETQI----DDDQRDYLQTIRASGDSLLVLINDILDFSKI 349 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 E+ + EL E I V E + +L +A K +E+ + + + D +RQ+++ Sbjct: 350 ESDKMELEERPIDPRCCVEEALELLAEKASSKGLELCYEASEDIPFGILGDATRLRQILV 409 Query: 374 NLLSNAVKFTAIG-GRVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIA 430 NL+ NA+KFT G V + T R I +KD+G GI + + SF Q + Sbjct: 410 NLIGNAIKFTEKGQIEVLLKTRETDQRNCVIEFTVKDSGIGIPADKQSRLFKSFSQVDSS 469 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPE 483 G GLGL I++ + GG+ + S G I + P + + + P+ Sbjct: 470 TTRKYGGTGLGLAISKKLTELMGGEMRVESSEGSGSSFIFTIVSPVSSPVVYSPD 524 >gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961] gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10] gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10] Length = 1020 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 401 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +V E ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 577 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 637 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727 >gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1271 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 152/287 (52%), Gaps = 9/287 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 ++T + ++ + D I L+ A+ S + ++AE N AKS FLA+MSH Sbjct: 848 WYTIRIRLIPWTDGHYVRLLVAND--ITVLKQAQEASRQAMEQAERANRAKSEFLATMSH 905 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N ++G S+++ L N +++I I ++G LL+LIN+ILDLS+IEAG+ Sbjct: 906 EIRTPMNVVVGMSDILLES----LPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQ 961 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL + + I ++ + I + Q++A+ K + + + + + D +RQ+++NLL Sbjct: 962 LELEHAVFNPILLIEDTIAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLG 1021 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT G V V G+ + + Y ++ D+G GI + + F Q + G Sbjct: 1022 NAIKFTEK-GSVEVQAGYANQQFWY-AVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGG 1079 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GLGL I +++M GG +S L +G +P + +P D Sbjct: 1080 SGLGLAICKNLMELMGGTIETQSTLGQGSRFYCAIPAPIADHLLPSD 1126 >gi|109899844|ref|YP_663099.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702125|gb|ABG42045.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1498 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 28/344 (8%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS---------NVKI 214 + V + +S + SL ++A + Y + K+ Sbjct: 771 LWNTQGVELPISVLPPPWKTLWAYSLYCLIALLIILNVIWRYRRKRQKELQQLIELEEKV 830 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 E ++LE A +++ R+ AE+ + KS FLA MSHE+RTP+N +LG +EV+ Sbjct: 831 AERTKELSHANSQLEQAVVETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVL 890 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + P + + ++RSG+ LL+L+N ILD S++EAG+ L + L ++ E Sbjct: 891 LSSDLKP----KQQHFAQLVYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEE 946 Query: 335 CIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + A K + I + P L V+ D +RQ+I NL SNA+KFT G V+V++ Sbjct: 947 VCDLFSEAAYNKGLNINAILSPEPLPQVYGDPARLRQIIANLTSNAIKFTER-GEVNVSI 1005 Query: 394 GWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + G ++D G G+A V F Q + G GLGL Sbjct: 1006 RRVACHDTEHEGNNKYSGFVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGL 1065 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPED 484 I + + GGQ ++S + EG LP + P Sbjct: 1066 AICKQLTVLMGGQIGVQSNIGEGSRFSVKIDLPLSDTSLIQPAP 1109 >gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1288 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 94/266 (35%), Positives = 143/266 (53%), Gaps = 24/266 (9%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E K AE+ N AKS+FLA+MSHE+RTPLN ++GFS+++ + N T ++Y+ Sbjct: 650 QKELKEAMKSAEQANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKTPL----NATQRQYL 705 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ SG L+ +IN+ILD S++EAG+ EL E+ S+ D+ + I ++ +AQ KNIE+ Sbjct: 706 NYINESGSSLMQIINDILDFSKVEAGKMELDEAFHSIYDLSDQVINVVMYQAQVKNIELL 765 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIK 406 + L + V DE ++QV++NLL NAVKFT G V + V G ++ Sbjct: 766 LDVQHGLPAAVLLDEARVKQVLVNLLGNAVKFTEE-GEVELAVRQISRTDKEIGLRFLVR 824 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E + + +F Q +I G GLGL I+ SI+ + G + + S++ G Sbjct: 825 DTGIGIPEEKKERIFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGSKLYLESEVGWGS 884 Query: 467 EVIAIL--------------PNTRVL 478 L P RVL Sbjct: 885 TFYFDLVLEYTEELKDEIEVPLKRVL 910 >gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6] Length = 861 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ ++A+ + KS FL +SHELRTPLNAI+GFS V+ E GPL Sbjct: 604 LEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFSTVLIDELDGPLA 663 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E I+R+G+ LL+LINE+LDL+RIEAG +L + L +V E + +Q Sbjct: 664 -PMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVSEVLDTMQGLL 722 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 + + + Q + L +V AD +RQ++ NLLSNAVKFT G + V+ Sbjct: 723 RSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTER-GTITVSANLRDEIGPDG 781 Query: 399 ---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + I+D G GI + F Q +G GLGL I + ++ H G Sbjct: 782 NAQSMVVMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRR-RGTGLGLAIVRRLVEAHQGH 840 Query: 456 FLIRSKLREGVEVIAILPNTR 476 + S EG LP R Sbjct: 841 IWVESSPNEGSTFSFSLPIAR 861 >gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009] gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris CGA009] Length = 779 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDET---------RK 240 G + T I H K L +A DL I + ++ K + ++ Sbjct: 479 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQSKLEKQALELADLARKYADEKR 538 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE N KS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 539 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 598 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR L + L + E + ++ RA+ K++E+ +++ + Sbjct: 599 LLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIPI 658 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GRV V G +G + I D G GI + + Sbjct: 659 V-ADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHLAGGSIVLMIADTGIGIPPQSLRRL 716 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + + G GLGL IA+S++ HGG +RS L G V+ LP Sbjct: 717 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLPR 770 >gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] Length = 1032 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 7/258 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + D+ ++ AEE N AKS FLA+MSHE+RTPL ++G E++ ++ Sbjct: 440 ITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANTSLSS--- 496 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +I I + Q L+ LI +ILD+S+IEA + ++ L+++V++ + + Q AQ Sbjct: 497 -QQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLYQGIAQ 555 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + +F IDP++ ++ D ++Q++ NLLSNA+KFT G V + + ++ + Sbjct: 556 QKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHR-GTVTIELKRSNKNNILL 614 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI+ + + F Q + A G GLGL I ++ GQ ++S+ Sbjct: 615 RVSDTGVGISPEQQIKLFEPFYQAH-SEIHAYGGTGLGLFICSKLIKLMDGQISLQSETG 673 Query: 464 EGVEVIAILPNTRVLNFI 481 G + LP + Sbjct: 674 VGSSFLVTLPLALDIQQT 691 >gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 798 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 117/287 (40%), Positives = 176/287 (61%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + E+D + E+A+ S E ++RAE N AKS FLA+MSHELRTPL Sbjct: 516 RLMATVHDLSIARKGERDRVRELSELARKYSLE-KERAEAANRAKSEFLANMSHELRTPL 574 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFSE+I+ T GPL ++ Y+EYI DIH SG LLN+IN+ILD+S+IEAG + L Sbjct: 575 NAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDRE 634 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L ++ E + ++ L+A+EKNI + +I+ ++ ++AD + ++QV++NLLSNAVKFT+ Sbjct: 635 EIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTS 693 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V T G +++I+D G GI + + + F Q G GLGL I Sbjct: 694 YGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAI 752 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 ++S+ HGG IRS R G V +P+ N P H++ + Sbjct: 753 SRSLAELHGGWLRIRSTERVGTVVSVCIPDR---NPAPNAGHDARTH 796 >gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37] gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory domains [Psychromonas ingrahamii 37] Length = 1255 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 13/287 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K + A I E + AK + AE+ NLAKS+FLA+MSHE+RTP+N Sbjct: 581 VSKVLLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEIRTPMNG 640 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +V++ ++ + + I S LL++I +ILD S+IEAG+ ++ + + Sbjct: 641 VIGMVDVLQQSSLKGF----QVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDIEYAPM 696 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT-- 383 ++ ++V + ML A++K +E+ DP++ + D +RQ+++NL +NA+KF+ Sbjct: 697 AVAEVVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAIKFSSG 756 Query: 384 -AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GRV V T I + DNG G+ E + + F Q + G GLG+ Sbjct: 757 SDRPGRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGGTGLGI 816 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-----LNFIPED 484 IA++++ GG+ ++S L +G LP + PE Sbjct: 817 TIARNLVQLMGGEITVQSTLNKGSIFSVHLPLEAITDIDLEQPQPEA 863 >gi|317159482|ref|XP_001827480.2| two-component osmosensing histidine kinase (Bos1) [Aspergillus oryzae RIB40] Length = 1141 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + R+ AE N +KS FLA+MSHE+RTP+N I+G ++ Sbjct: 594 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 653 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + P +E + +H G LL +I++ILD+S+IEA ++ SL V Sbjct: 654 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 710 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +L + A E+++ + I+ S+ V D +RQ+ILNL+ NA+KFT G++ + Sbjct: 711 FKALKILAVEASERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQL 769 Query: 392 TVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 T+ S+ D G GI + ++ + F Q ++ G GLGL I+ Sbjct: 770 TIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSIS 829 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG + S + G Sbjct: 830 KKLVNLMGGDIWVTSAVGVGSTFHFT 855 >gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 825 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 131/285 (45%), Gaps = 10/285 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + L ++ AE AKS FLA MSHE+RTP+ Sbjct: 410 REWNCAEEEALRAAGILLGASIRRRELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPM 469 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG ++ + +E ++Y+ ++ ++LL++IN+ILD S+IE+G++++ + Sbjct: 470 NAILGMCHLLLNTGL----SEQQRDYLCKTRQAARNLLDIINDILDFSKIESGKFDVETA 525 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 L +++ + +RA EK I + P + + D + QV++NL+SNAVKFT Sbjct: 526 PFPLAEMLDGIRNVAGVRAAEKGIRLSVAASPDMPGELVGDALRVSQVLINLVSNAVKFT 585 Query: 384 AIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V V+V ++D G G++ E+ + F Q +I G G Sbjct: 586 ER-GEVAVSVSPRHRREDSLLALFEVRDTGIGMSREEVARIFRPFTQTDTSITRRYGGTG 644 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 LGL I + ++ GG+ + S+ G LP IP Sbjct: 645 LGLVICKELVEMMGGKISVSSEPGRGSIFCFELPFKLPDAAIPPA 689 >gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] Length = 843 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 140/272 (51%), Gaps = 15/272 (5%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + AE+ + AK+ FL++MSH++RTP+NAI+G + +++ E E E Sbjct: 442 QTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAIIGITTLMKNEL---HQPEKLAE 498 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ + SGQ LL +IN+ILD+SRIE+G+ L+ I+L + + +++ +A ++ Sbjct: 499 HLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINLPRQISQLESVIRQQAGQRRQT 558 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISI 405 + +V D ++QV++N+LSNAVK+T GG + + + + Y + Sbjct: 559 FTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGHIRLEIDELTHTEHYTKYRFVV 618 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +DNG G++E T+ F + + + QG GLG+ I +SI+ GG + S +G Sbjct: 619 QDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLGMAITKSIVDLMGGTIHVESTTGKG 678 Query: 466 VEVIAILPNT--------RVLNFIPEDNHEST 489 + +L T + PE+ ++ Sbjct: 679 TQFEVVLEFTIDAEADTVQETQVPPEEEENAS 710 >gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 947 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 24/291 (8%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 Y L + + + + EL AK ++ + AE + KS FLA+MSHE+R Sbjct: 552 YWNRKLSREVDERIRSENALRRSEDELRAAKIEAERLAREAEAASRTKSEFLANMSHEIR 611 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NA++G+S+++ + + Y+ I + LL LIN+ILDLSRIEAG+ L Sbjct: 612 TPMNAVIGYSDLLSNTV----TDPQQRNYLDAIRAGSRALLMLINDILDLSRIEAGKMRL 667 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + +S+ ++ + + + LRA+++ + + + + + + DE +RQV+ NL NA+ Sbjct: 668 DYAPVSMRRMLGDVLHIFDLRARDQGVTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAI 727 Query: 381 KFTAIGGRVHVTVG------------------WTSGRGQYISIKDNGPGIAEGEIPTVLT 422 KFT GG V V I++ D G GIA + V Sbjct: 728 KFTHEGG-VTVRAKASPLPKQSYPPGTKPGEPEHPRYRLEITVTDTGIGIATDQQERVFD 786 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +F Q G GLGL I++ + GG+ ++S L EG ILP Sbjct: 787 AFEQQEGQNSRRYGGTGLGLAISRKLALMMGGELTLKSTLDEGSVFKLILP 837 >gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65] gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65] Length = 938 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 7/259 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I+ K+ + +++AE AKS FLA+MSHE+RTP+N +LG +++ Sbjct: 400 QQDISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRK---SK 456 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N I H S + LL +IN+ILD S+IEAG+ L +L++ + + L Sbjct: 457 GLNRDQLHQINLAHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISESLAF 516 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399 A +K+I++ I + ++ D +RQVI NL+ NA+KFT G ++ ++ Sbjct: 517 HAHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEKSN 576 Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +S IKD G GIAE + + ++F Q + G GLGL IA+ + GG Sbjct: 577 LIKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGGDVT 636 Query: 458 IRSKLREGVEVIAILPNTR 476 + S G + + R Sbjct: 637 VSSTPGVGSQFSFHIFIER 655 >gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2] gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2] gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395] gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] Length = 1020 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 401 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 576 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +V E ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 577 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 637 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 695 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727 >gi|134076372|emb|CAK39626.1| unnamed protein product [Aspergillus niger] Length = 1306 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 681 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 740 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 741 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 797 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 798 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 856 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 857 TICKSDREQCAADEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 916 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 917 SKRLVNLMGGDVWVTSEYGHGSTFHFT 943 >gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 847 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 7/232 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K F++++SHELRTPL++I GF+E++ ++ ++Y+ IH L Sbjct: 613 EADRMKEEFVSTVSHELRTPLSSIYGFTELMLNR---EIDPPKQRKYLTTIHSETGRLTT 669 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N+ LD+ R+E+ + L+ + E I + + A Sbjct: 670 LVNDFLDVQRMESSEQRYQMATFDLVQLAAELIDFHDASHTTHELSFEAV---GPIMIDA 726 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + ++Q++ NLLSNA+K++ GG V + + I+I+D G GI + + + Sbjct: 727 DAEKIKQLLNNLLSNAIKYSPDGGNVAIRIE-NHDGFAEITIRDQGIGIPQEAMSKLFDK 785 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + + G GLGL I + I+ +H G + S + G P Sbjct: 786 FYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFPIA 837 >gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 1021 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 635 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DDL 690 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 691 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 750 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 751 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GSILFGYKLKDDNTLWFY 809 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 810 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGK 865 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G + LP P + + Sbjct: 866 GSKFWFTLPFQPKKELFPSEEQK 888 >gi|302659494|ref|XP_003021437.1| sensor histidine kinase/response regulator, putative [Trichophyton verrucosum HKI 0517] gi|291185335|gb|EFE40819.1| sensor histidine kinase/response regulator, putative [Trichophyton verrucosum HKI 0517] Length = 1318 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 22/274 (8%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 696 ELKKKINKMVSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 755 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 756 DTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNA 812 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V + + Sbjct: 813 LKTLAVKANEKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVTLEIK 871 Query: 395 W-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 S++D G GIA+ ++ + +F Q + G Sbjct: 872 KHVPPPPAEGEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGG 931 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ GG + S+ G Sbjct: 932 TGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFT 965 >gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 800 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 13/286 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + L N ++ E ++ +L+ K + K+ + + KS FLA+MSHE Sbjct: 347 LQIQSEELQAVNNQLEERTKEAEEKARDLQQTKKELELQTKQLQASSQYKSEFLANMSHE 406 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL SE++ L+ E E+ I+ +G LL LIN++LDLS+IEA + Sbjct: 407 LRTPLNSILILSEMLLENKNETLSEEEQ-EFAHIIYSAGTDLLGLINDVLDLSKIEAKKL 465 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 E+ +S+ ++ + AQ+K I+ + + + + DEK ++Q+I N+LSN Sbjct: 466 EMICGEMSIQELCTQLERHFTPIAQQKQIDFQILLQKPVPDLFYTDEKRLQQIIKNMLSN 525 Query: 379 AVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 A KFT G + V + S I+ +D G GI+E + + +F Q Sbjct: 526 AFKFTEQGSVIMQVEQMQKEQMTVEMEKKSDTWLVITCQDTGIGISEEQQQLIFDAFHQA 585 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 AI G GLGL I++ ++ GG + S +G +P Sbjct: 586 DGAIARKYGGTGLGLSISKELVTLLGGSITVHSIQGKGSIFTVYIP 631 >gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 918 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 99/441 (22%), Positives = 179/441 (40%), Gaps = 22/441 (4%) Query: 53 PLFVLLVANI--GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE-VYVWRIW 109 L A+ + + S + + + + + Sbjct: 218 LSLGLFSASFDGLLFRLLPGYVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPHLDRV 277 Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 L +A + LV W +L + L+ + L Y ++ Sbjct: 278 LRGLLLACVVLLASEPLVGLRAWNVLASLTVMLVSLSLLLAGGHVWRQGLRYGLYYILAW 337 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 AL +++ L + +T L ++ + + L E Sbjct: 338 --GALLLSFLVTTAASLGFELFGLFGSGVVKVGMTVELVTLSIGLAD---RINALKEEGF 392 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ +++ R N AKSRFLA MSHE+RTPLN +LG +++ + Sbjct: 393 RSRQAAEQARVE----NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAA---- 444 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I SG L+++IN+ILD +RIE+G+ +L L +++ + + + +A+EK + Sbjct: 445 CVETIASSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLR 504 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYI-S 404 + +D + + D +RQV+ NLL NA+KFTA G V + V +GR + + S Sbjct: 505 LHLGLDRGVPRRLNGDPTRLRQVLTNLLGNALKFTAE-GHVALRVQRRFDEAGRERLLYS 563 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D+G GI+ T+ SF Q + G GLGL I++ ++ GG+ + S+ + Sbjct: 564 VSDSGIGISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGK 623 Query: 465 GVEVIAILPNTRVLNFIPEDN 485 G LP + L+ D Sbjct: 624 GTRFSVDLPLSPALDSGDADE 644 >gi|67531559|ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4] gi|40741632|gb|EAA60822.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4] Length = 1300 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950 >gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 917 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251 + + + + + E I + +E+ D RK A E + KS Sbjct: 229 LARGINRMAETLHNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ I +S +LL +INEILD Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLSTIEKSADNLLGIINEILDF 344 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + +S+ D ++Q Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDTPTSLVGDPLRLKQ 404 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+SNA+KFT G + V IS++D G G++ ++ T+ +F Q Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I++ ++ GG+ + S EG + L Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509 >gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 402 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 12/286 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAE-------EENLA 248 + + + + + + L E + RK+ E E + Sbjct: 114 RLWQVLRNAIRVHQAEMEAELANKRLWESNELLRRKNRELERQRKQIERQNRKLAEASRL 173 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTP+NAI+GFS+++ + PL + + I + QHLL ++NE+ Sbjct: 174 KSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPL-VPQQLDMVQRIFNNAQHLLTMLNEV 232 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD S+IEAG ++L + +L V L+ A EK + + I+ + D+ + Sbjct: 233 LDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTLEVNINLEEPMIINDQNSI 292 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 RQV++NL+SNA+KFT GG V + V + I++KD G GIA + + +F Q + Sbjct: 293 RQVLVNLISNAIKFTDSGG-VWINVQEQANDQLIIAVKDTGVGIASDHLQEIFEAFRQIN 351 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I S++ GQ + S+L G P Sbjct: 352 QTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGSIFQVEFPR 397 >gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea 34H] gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 948 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 94/356 (26%), Positives = 157/356 (44%), Gaps = 19/356 (5%) Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 + + I A L+ +SA+ L V P+ + + L+ Sbjct: 179 HLNFQQQSQFIVAFAFALLGSLLSAIFAIRLIKKV---TKPINSMVQAIERIREGKLESR 235 Query: 189 LAGMLATALSFFTYITYHLFKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRK 240 ++G L L+F + +S I + + + + E+ +++ Sbjct: 236 VSGQLIGELNFLKNGINAMAQSLDGYQNEMQASIDQATIDLRESLEQFEIQNVELSISKR 295 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +A+E N KS FLA+MSHELRTPLN ++GF+ + + E ++Y+ I RS + Sbjct: 296 KAQEANRVKSEFLANMSHELRTPLNGVIGFT----RQVLKTPLTENQRDYLQTIDRSANN 351 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL +IN+ILD S+++AG+ SL + + E + +L A +KNIE+ + L Sbjct: 352 LLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNIELSINLPQELPD 411 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISI--KDNGPGIAEGE 416 S+ D ++Q+I NL+SNA+KFT G V +T S + + D G G+ + Sbjct: 412 SLVGDTMRIKQIITNLVSNAIKFTPQGSVAVDITSEEISQNNIKLKVIVTDTGIGMTTNQ 471 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 T+ +F Q +I G GLGL I Q + G S+ G Sbjct: 472 QRTIFDAFTQADQSITRLYGGTGLGLVICQRLAQEMNGDIGFSSEKNHGSSFWFTF 527 >gi|259482698|tpe|CBF77424.1| TPA: Histidine kinase J7 [Source:UniProtKB/TrEMBL;Acc:Q6WJ24] [Aspergillus nidulans FGSC A4] Length = 1297 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950 >gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS] gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS] Length = 612 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 18/264 (6%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 AE+E A++ + K E + KS FLA+MSHELRTPLN++L ++++ G L NE Sbjct: 34 AEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNL-NE 92 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 Y I +G LL LIN+ILDLS++EAG+ E++ A+SL D++ A E Sbjct: 93 KQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLASE 152 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396 K + +++ L + D + ++Q++ NLLSNA KFT G++ +++ Sbjct: 153 KGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFT-SLGKIVLSIQRVTNIEDESY 211 Query: 397 -------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 IS+ D G GI + + + +F Q G GLGL I++ + Sbjct: 212 QLGKMEARENLIAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQLA 271 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 GG+ + S+ G LP Sbjct: 272 RLLGGEITLHSEEGSGTTFTLYLP 295 >gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 893 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 147/296 (49%), Gaps = 12/296 (4%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 L + + + F Y L + + + + L A ++ K A+ Sbjct: 330 ALVWRITTVAVVVIIIFLYWNRKLSREVAERIRSEEALRKSEERLRAAMKHAEHLAKAAD 389 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AKS FLA+MSHE+RTP+NA++G++E++E G +++ K Y+ I + + LL Sbjct: 390 SANKAKSEFLANMSHEIRTPMNAVIGYTELLE----GLIHDAKQKSYLDAIKKGSRALLT 445 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 +IN+ILDLS++E+G+ + + + ++++ + R +K +++ +D L + Sbjct: 446 IINDILDLSKVESGKLRIEYAPLDPHRLLQDVAQIFSARISQKKLDLRIVLDDQLPHSLV 505 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQYIS----IKDNGPGIAEGE 416 DE +RQVI NL+ NA+KFT G + + G +I ++D+G GIA+ + Sbjct: 506 LDEVRLRQVIFNLVGNAIKFTHE-GYISLCAKASSIPGDDDHIELEIAVEDSGIGIAQDQ 564 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q G GLGL I++ ++ G+ ++S+L +G L Sbjct: 565 QARIFNAFEQHEGQSNRQYGGTGLGLAISKKLVEMMNGEIGLKSELGKGSRFEIRL 620 >gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] Length = 620 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 19/309 (6%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P + + ++ I G+L + + + + ++E+ Sbjct: 330 LPQGSVIYNMPLEVRYLNYIIAGGILLVIAVVYIILH------LIYMYRRESER------ 377 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + E ++RAEE N KS FLA+MSHE+RTPLNAI+GF+ +++ E L +E Sbjct: 378 KKQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--DLTDEEK 435 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I+++ LL LIN+IL+LSRIE+GR + +L +++ E L N Sbjct: 436 DLFRNTINKNSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPS-N 494 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I ++ S + D QVI N ++NAVKFT G + V + +I ++D Sbjct: 495 IRFLKEFQESELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIFVED 554 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++E V F + QG GLGL I Q+I G+ + S+ +G Sbjct: 555 TGKGMSEEAQKKVFERFFKADE----FAQGTGLGLSICQTIAERLDGRITLASQEGKGSC 610 Query: 468 VIAILPNTR 476 I+P Sbjct: 611 FTLIIPCRP 619 >gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] Length = 1042 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ AEE N AKS FLA+MSHE+RTPL I+G E++E + P Sbjct: 452 ITIQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENTALSP--- 508 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K +I + + Q L++LI +ILD+S+IEA + + + L+D+++ + + Q AQ Sbjct: 509 -KQKHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQGLAQ 567 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + +F IDP++ +V D ++Q+ NLLSNA+KFT G+V V + + + Sbjct: 568 QKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTH-NGKVTVELRNGTNNNIIL 626 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI++ + + F Q + G GLGL I ++ GG+ + S L Sbjct: 627 FVNDTGVGISQEQQEKLFEPFYQAHSGQHT-YGGTGLGLFICAELVKLMGGEISVTSNLT 685 Query: 464 EGVEVIAILPNT 475 G LP Sbjct: 686 VGSSFQITLPLE 697 >gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 456 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSG 298 +R E +S F+A++SHELRTPL +I GF E + G ++N ++ ++ I Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFES 275 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L LIN+IL LS IE + + I L + + + + ++ A+ KNI + + ++ + Sbjct: 276 ERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTD 335 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + ++ Q+++NL+ N +K+T GG V V+ G ++++DNG GI++ IP Sbjct: 336 LVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIVTVEDNGIGISKENIP 394 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ G + I Sbjct: 395 RLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448 >gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 765 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 2/263 (0%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 N + L I++ + AK+ R AEE N K+ FLA++SHELRTPLN I+GF Sbjct: 491 NYQGLLATMAILRDISDWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNPIIGF 550 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+++ G L NE K+Y +I ++G LL ++N I+D+ I + +L +I+ Sbjct: 551 SDILVSGVAGEL-NEKQKKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCFKVIE 609 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 ++ E +L A +K I + IDP L+ + AD+ R+++ NL+ NA+KFT GG V Sbjct: 610 MIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSGGHVS 669 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS+ D G GIA +I + F Q + GVGLGL + + + Sbjct: 670 IHA-IQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVKEYVK 728 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 GG + S+L +G LP Sbjct: 729 LQGGDIWVDSELGKGSTFTFTLP 751 >gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1478 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K++FLA+MSHE+RTP+N +LG SE++ + N +++ + SG+HLL +IN+I Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDL----NPRQLDFVKTLQVSGEHLLGVINDI 584 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S++EAG L +++ + + + + +A+ K++E+ +D + + D Sbjct: 585 LDFSKLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGR 644 Query: 368 MRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422 +RQ+ NL+SN++KFT G + V+V +++D G GI + + Sbjct: 645 LRQICTNLVSNSIKFTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSKLFQ 704 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q + G GLGL I + ++ GG+ + S+L G + +V Sbjct: 705 AFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGEIGVESQLGVGSTFWFTITFGKVPVGTE 764 Query: 483 EDNHE 487 E+ + Sbjct: 765 ENESD 769 >gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii] Length = 706 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 21/291 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251 + + + + + Q E I + +E+ D RK A E + KS Sbjct: 24 LASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSE 83 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ + P + + Y+G I +S +LL +INEILD Sbjct: 84 FLANMSHEIRTPLNGILGFTHLLQKSELSPRHVD----YLGTIEKSADNLLGIINEILDF 139 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + +V D ++Q Sbjct: 140 SKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQ 199 Query: 371 VILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NL+SNA+KFT G V V IS++D G G++ ++ + +F Q Sbjct: 200 ILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFSQA 259 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476 ++ G GLGL I++ ++ GG+ + S EG E LP TR Sbjct: 260 DNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 310 >gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040] Length = 770 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 171/347 (49%), Gaps = 25/347 (7%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 L++ A+S ML L+ P+ ++ ++ +A A + + + Sbjct: 157 WTVLAVIAMSLLMLYLVYRLALNPL------------QIVHARMSNAVAGAKTGHFSLPW 204 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + + +D AE + + + R++AE + AKS FLA+MSHE+RTP+N Sbjct: 205 YSSREFQALNVSVGVLEDSFAERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMN 264 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G +EV+ + P + Y I +SG LL++IN+IL S+IEAG+ EL+++ Sbjct: 265 GVIGMAEVLRETELTP----DQELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQAT 320 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384 +L ++ + I++L +A EK +++ + DP L+ + D +RQ++ N++ NAVKFT+ Sbjct: 321 FNLRTVIEDVIMLLAPKAAEKWVQLTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTS 380 Query: 385 IGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G VH+ V + IS+ D G GI ++ + +F Q A +G GLG Sbjct: 381 R-GSVHIDVTGVARGQLMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLG 439 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNF--IPED 484 L I+ ++ G+ + S +G LP + +PE Sbjct: 440 LAISTRLLQMMKGRIHVTSSEGKGSVFTIDISLPTSDRAPVAFLPEQ 486 >gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 917 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + + I TLL + + + T ++A+ +S Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLHNAQEELQMSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|121710420|ref|XP_001272826.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus clavatus NRRL 1] gi|119400976|gb|EAW11400.1| two-component osmosensing histidine kinase (Bos1), putative [Aspergillus clavatus NRRL 1] Length = 1341 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 730 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 789 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 790 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 846 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 847 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 905 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 906 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 965 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 966 SKRLVNLMGGDVWVTSEYGHGSTFHFT 992 >gi|115442698|ref|XP_001218156.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624] gi|114188025|gb|EAU29725.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624] Length = 1101 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 634 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 693 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 694 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 750 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 751 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 809 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 810 TIRKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 869 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 870 SKRLVNLMGGDVWVTSEYGHGSTFHFT 896 >gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 556 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 11/265 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I ++ + E +++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 151 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 210 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ E ++Y+ +H + + LL L+N+ILDLS+IEAG E S + + Sbjct: 211 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 266 Query: 330 DIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + + +++ ++I + S V D + QV+ N +SNA+KFT G Sbjct: 267 LLLNDLEQLFRMKIGSNSPVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTE-GS 325 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + +S G + D G GI+ ++ V F + G GLGL I ++I Sbjct: 326 IRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTI 380 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 + GG+ S++ +G LP Sbjct: 381 VNKLGGEIGAESEVGKGSTFWFTLP 405 >gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286] gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286] Length = 984 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|33466074|gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans] Length = 1297 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 688 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 747 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 748 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 804 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 805 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 863 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 864 TICKSDREQCAANEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 923 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 924 SKRLVNLMGGDVWVTSEYGHGSTFHFT 950 >gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 1186 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 13/260 (5%) Query: 222 DDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++L+ + + D+ K +AE+ N KS+FLA+MSHE+RTPLN I+G++E++ + Sbjct: 784 EELVKTNQKLQESMDKANKMAVKAEKANELKSQFLANMSHEIRTPLNIIMGYTELLAKD- 842 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L + YK YI I +G LL+ +N+ILD+S+IEAG E++ I L ++ + Sbjct: 843 ---LEEDNYKRYIKSIRSAGDSLLDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAI 899 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTS 397 + + K ++ K+D V DE RQ+++NLL NAVKFT G + V S Sbjct: 900 FADKVKAKGLDFQLKMDNLPPLVKMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVS 959 Query: 398 GRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G+G I ++D G GI + + +F Q + G GLGL I + ++ Sbjct: 960 GKGNNNIKLRIIVQDTGIGIKAEKQEEIFKAFSQENAESTREFGGTGLGLSITRRLVDMM 1019 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GQ ++S +G Sbjct: 1020 DGQISLQSTAGKGSVFKIEF 1039 >gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 557 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 2/299 (0%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + + L A+ + + +LS + + + + + S E E Sbjct: 249 AVPLLLQDQAIGAIMLYAQEPRPIRNHETFLLSSASIQASMAIQNTLLFSELKEKNAALE 308 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N KS+FLA+++HELRTPL++I+ + ++ + + +E+I + R + L + Sbjct: 309 QANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQFMVRRAEDLSH 368 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L++++LDLS+IEA R E+ A+ L + E + L+ A K++ + + DP + V A Sbjct: 369 LVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLECDPQVPKVLA 428 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLT 422 D +RQ++LNL+SNA+KFT GG V + R Q IS+ D G GI+ + + Sbjct: 429 DSHRLRQIVLNLVSNALKFTEKGG-VTIHCQHMPERAQVLISVHDTGIGISPAALGYIFE 487 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q + G GLGL IA+ ++ GG+ + S G LP ++ Sbjct: 488 AFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLPVAASISPS 546 >gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105] gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105] Length = 1085 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 7/247 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ELE + + ++AE + AK FLA+MSHE+RTP+NAI+G +++E + Sbjct: 677 ELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDTDL----QAR 732 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y+ I + LLN++N+ILD+SR+EA + ELS S L ++ + + RA+EK Sbjct: 733 QRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEK 792 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-IS 404 I+++ D + + D + Q++ NLLSNA+KFT GR+H+ V + Q S Sbjct: 793 AIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEK-GRIHLQVQSVADGKQLQFS 851 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G G+ E + + F Q + G GLGL I ++++ GGQ + S Sbjct: 852 VKDTGIGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGL 911 Query: 465 GVEVIAI 471 G Sbjct: 912 GTTFHFT 918 >gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 1019 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 12/299 (4%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKSLSD 236 S ++ S+ + Y + + + + QAE + + LE + Sbjct: 443 SGNIYYYSITLSSIYDVFNERYQVAAILRDISSLKNIQAELEGVNTTLELKVSQRTRELE 502 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A + AKS F+A++SHE+RTP+N +LG E+++ + + +E Y+ + Sbjct: 503 RAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLEMLKEDGL----SEQQHHYLKLANS 558 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S L+NLIN+ILD S+IEAG+ ++ + ++ + + I L L+ Q K +E+F Sbjct: 559 SANSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVCSDMINSLALQGQRKGLEVFLHTHN 618 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGI 412 + V D ++Q+++NL++NA KFT G + + + + ++KD G GI Sbjct: 619 IVDRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGI 678 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 A I + F Q + G GLGL I + + GG + S+ G A Sbjct: 679 AAENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNISLTSEKGVGSTFTAT 737 >gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+] gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+] Length = 1417 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 26/312 (8%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I + + + +A + D+ A+ E + +++E A+E + KS+FLA+MSHE+R Sbjct: 787 IIEGVIGLIMDVTELKAREQDIQAQAQEKRQLVANEA--AAKEASRLKSQFLANMSHEIR 844 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+ ++G SE++ + E ++ +I+RS LL +IN+ILD S++E+GR ++ Sbjct: 845 TPITGVIGMSELLLDVEL----TEEQRDITENIYRSANALLTVINDILDFSKVESGRLDI 900 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLSN 378 E SL IVR+ ML A+ K++ I + + V D +RQ+I NL++N Sbjct: 901 EEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETDMVVMGDPGRVRQIITNLVTN 960 Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 ++KFT G V +V I+D G GI E + F QG + Sbjct: 961 SIKFTNH-GHVKFSVFKEKDTPEITEIKFVIEDTGIGIEEEVRKRLFQPFSQGDASTARK 1019 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-----------LNFIPE 483 G GLGL I + ++ G+ ++ S L G +P + ++ IP+ Sbjct: 1020 FGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIPFNKPQGAAQKSSLVQIDPIPD 1079 Query: 484 DNHESTQYKCYA 495 C++ Sbjct: 1080 RLQSEMSVSCHS 1091 >gi|94501038|ref|ZP_01307562.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] gi|94426785|gb|EAT11769.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] Length = 640 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 21/351 (5%) Query: 159 LPYAVFLSFFPVVV-ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L +A+ + + V AL + V I + LS Y T ++ ++ Sbjct: 165 LIHAMLIVVVAMTVCALIAWLSGARLVRPIKKLSDVVDQLSHRVYDTRTEETASGEVGQL 224 Query: 218 QAEKDDLIAELEVAKSL-------SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 Q + L EL+ A+ + R+ +E N AKS FLA M+HELRTP+N +LG Sbjct: 225 QVGVNKLANELQKAEKVQHHYVKDLIRAREASESANKAKSEFLAVMTHELRTPMNGVLGM 284 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ G ++ EY+ SG HLL LIN+ILD S+IE GR +L E L++ Sbjct: 285 LQLLQ----GTQLSKEQNEYVDVAINSGDHLLGLINDILDFSKIEQGRIDLDEQYFDLVE 340 Query: 331 IVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ AQ+K ++ + + V D+ ++QV+LNL+ NAVKFT G + Sbjct: 341 SLKSLCDSFTPIAQKKGLQFNVHFMTHTNLWVKTDQTRLKQVLLNLMGNAVKFTDT-GSI 399 Query: 390 HVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 ++++ I ++D G GI + ++ + +F Q +I G GLGL I+ Sbjct: 400 NLSLQDLSIEDDEVELSIVVQDTGKGINQAQLSRIFDAFQQEDASISRQYGGTGLGLAIS 459 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLNFIPEDNHESTQYKCY 494 + ++ GG+ ++S+ G I P V N + ++ + + + Sbjct: 460 KQLVEKMGGKLEVQSEKDRGSTFICRFCWPIN-VANEQSDVTQDANEQESF 509 >gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis] Length = 2362 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 18/295 (6%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLN 265 ++ + +A L AE + + ++ R K AEE AKS FLA++SHELRTPLN Sbjct: 1897 ENRSMVAVQKRALAKALEAETKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLN 1956 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G SE++ + N+ E I S LL +IN+ILD S++EA + +L A Sbjct: 1957 GVIGNSELLRDSDL----NKDQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIA 2012 Query: 326 ISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + D+VRE + + + + +KN++I Q I+ ++ D + QV+ NL+ N++K Sbjct: 2013 FNPEDMVREVVRAVSYSNREKTSKKNVKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLK 2072 Query: 382 FTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + + ++ ++D G GI ++ + F Q + G Sbjct: 2073 FT-EDGSITIGARLDKETKEHATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGG 2131 Query: 438 VGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489 GLGL I +S++ G+ + S+ G + + ++T Sbjct: 2132 SGLGLSICKSLIETMMKGKIRLESEENVGTTAWFTVTFEKAKPDVAAGDAQTKAT 2186 >gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation) [Geobacillus kaustophilus HTA426] Length = 582 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F+A++SHEL+TP+ +I GF+E + M + + ++ I + + Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ E+LDLS+IE ++L + + ++ E + + +A EK I++ + L Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D M+Q++LNLL+NA+ +T GRV V T + I +KD G GI E EIP + Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETE-KEVLIHVKDTGIGIEEKEIPRI 525 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G + SK+ G P Sbjct: 526 FERFYRVDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1609 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 4/253 (1%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + K +FLA+ SHELRTPL I+G SE + + Sbjct: 905 RQKTEQEQKVNEQLRRVDALKDQFLANTSHELRTPLQGIIGLSESLIERV----QERDQQ 960 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + I S + L +L+N+ILD S+++ EL+ ++L + + L Q K Sbjct: 961 EDLSMIISSSRRLNSLVNDILDFSKLKNQEIELATKPVNLYALTDVVLRNLAPLVQGKKF 1020 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 I + L + WADE ++Q++ NL+ NA+KFT G V + + IS+KD Sbjct: 1021 SIINAVPNDLPAAWADENRLQQILYNLVGNAIKFTETGQIVVNALREKTSDVLTISVKDT 1080 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F QG +I + G GLGL +++ ++ HGG+ + S + G Sbjct: 1081 GIGIPADKQEVIFKEFEQGDGSIARSFAGTGLGLSVSKRLVELHGGKMWLESVVGSGSTF 1140 Query: 469 IAILPNTRVLNFI 481 LP Sbjct: 1141 FFTLPLASTEASA 1153 >gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 531 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 108/462 (23%), Positives = 195/462 (42%), Gaps = 29/462 (6%) Query: 33 FDREIITLHVESLFRVSPILPLFVLLVAN----IGTWFTQNPIFPMWSLI-TLAVYAANL 87 + E+ L + F V ++ + T + N W + L + Sbjct: 75 YKHELRMLILSLTFCVVALVEFAHAVSYAGMPDFITPSSPNKASTYWIIARLLLSTGLLV 134 Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL---------- 137 ++ K I+ ++ L +++GL + + + Sbjct: 135 AVFSKNKVKIIRKSDLI----LALFALLSLGLIVAVALYLPHLPAMYDTSTANQTSVKIA 190 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAIMSMHVLDISLAGMLAT 195 Y +L ++ L L F F +++ + + V D Sbjct: 191 LEYAVMIMLGLAAVRLLLKKELNRQDFHLFLALIIGIMSDATFTLYDSVYDTYNLLGHIY 250 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ F +I L + V +L + I+ L+ + + ET ++ +E + K FLA+ Sbjct: 251 LVASFVFIFKALTEEAVGMLY------EAISTLKSQREMLAETNRQLQETDRIKDEFLAN 304 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 SHELR+PL A++ F+E++ E+ G L N+ ++Y+ +I+ SG+ LL +IN LDLS+I Sbjct: 305 TSHELRSPLTAVIAFTELLMDESSGEL-NDLQRDYVHEINDSGRELLGMINGFLDLSKIA 363 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG+ L + +++ + + ++ K I + + + VWAD QV+ NL Sbjct: 364 AGKTFLYREHFKIDELIEDIFLRMRHLFNNKGITLEVARNKNQLPVWADRGKTGQVLTNL 423 Query: 376 LSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LSNA+KFT GG+V V SGR I+++D G GI + + F Q Sbjct: 424 LSNALKFTTTGGKVVVESNSGDSGRDVIITVRDTGIGIDIRDQEKIFQPFYQVDGTSTRN 483 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G+G+GL +A+ ++ HGG + S+ G LP Sbjct: 484 YGGMGIGLNLAKKLVELHGGTIRVSSQQNAGSIFTFTLPTEE 525 >gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 917 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + + I TLL + + + T ++A+ +S Sbjct: 134 RHLTSPIIPAEADTLMGWVDVEISHNGTLLRGYRSLFASLLLIFTGLAITAVVAVRLSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ + L + + + + + I Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRL---PPLGSRELDELASGINRMAATLQNAQEELQMSI 250 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + +E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] Length = 1935 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 138/294 (46%), Gaps = 12/294 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 +S + S + L EL + ++ AE+ AKS FLA+MSHE+RTP Sbjct: 1517 AVRFLQSLADLASVAMDNVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIRTP 1576 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ILG +E+ + ++ +EY+ +SG LL++IN+ILDLS+IEAG+ L + Sbjct: 1577 MNGILGMNELALMRV----SDSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIALDQ 1632 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 L D++ + L L A EK + I ++ + D+ +RQV+ NL+SNAVKF Sbjct: 1633 EPFDLRDVLDSTLKPLSLGADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAVKF 1692 Query: 383 TAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 + G V VTV ++ D G GI ++ ++ SF Q + Sbjct: 1693 SDQ-GVVRVTVSNNGEASSPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKYG 1751 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G GLGL I + ++ GG S++ +G + P+ Q Sbjct: 1752 GTGLGLTICRQLVELMGGSIWAESEVGKGSTFFFTIECDVAQEVEPKAETGRPQ 1805 >gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 943 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 16/282 (5%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + I + + + ++AE N AKS FLA+MSHELRTPLN ILG +++ Sbjct: 376 SVEQFIAVERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPLNGILGMAQI 435 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 IE + + I + SG HLL+L+N+ILD S+IE + EL D++ Sbjct: 436 IESNI----KDPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLPFDFKDVIS 491 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 ++K +E+ + +V+ D+ +RQ+I NL+SNAVKFT G + +T Sbjct: 492 PIANTYIPICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTHK-GSITLT 550 Query: 393 VGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 T S +G I I+D+G GI E + + F Q A G GLGL I + + Sbjct: 551 FSHTLTAKSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGLGLAIVKQL 610 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVL------NFIPED 484 + G ++S EG +LP V+ IPE Sbjct: 611 VDAMQGYISVKSVEGEGTGFTIMLPLETVIKKQIHKEKIPEA 652 >gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 998 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 110/401 (27%), Positives = 174/401 (43%), Gaps = 32/401 (7%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAI-------GLCWTLLTLVEPGTWTPEYLTIY---KS 142 S + + + L+GQ A+ W +L + + Sbjct: 334 YRRSSGEKVQQFRVEKEFLLGQSALVSLFSVPSTDWVVLIAMPSEYSDKAVALVVGRVSK 393 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 L++ I L F L +VF + + A+ + L G F Sbjct: 394 LVLIVVFIICILLYFFLWRSVFSPANALRGEVRKLALEGQSRGRLELEG-----DDEFGR 448 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I Y K ++ E +++ S +E ++ AE + K+ FLASMSHE+RT Sbjct: 449 IAYWFNKRTDQLSEALMEL-------KLSNSELEEAKQAAESASRTKNVFLASMSHEIRT 501 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G S ++ M ++ ++G I S + LL+LIN+ILD ++IEA EL Sbjct: 502 PMNAIIGLSSLLAEMDM----SKEQSNFVGTIRASAESLLSLINDILDYTKIEANELELE 557 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVK 381 E L +I+ E M+ L+A EK + +D + V D +RQ++LNL +NA+K Sbjct: 558 EVPFDLREIMEELTGMVSLQADEKGLGFSCYLDTATEGMVLGDPGRVRQILLNLATNAIK 617 Query: 382 FTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT GRV ++ + T S+KD G GI E ++ SF Q G Sbjct: 618 FTIS-GRVDISGACIEETDTHYVLGFSVKDTGIGIPETAFGSLFDSFRQVDSTTTRKYGG 676 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 GLGL I + + GG+ + SK+ G E I+ +V Sbjct: 677 TGLGLAICKRLCEKMGGEIQVTSKVGLGSEFSFIIRLGKVA 717 >gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2] gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2] Length = 984 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 155/333 (46%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G+G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|304322209|ref|YP_003855852.1| two-component hybrid sensor and regulator [Parvularcula bermudensis HTCC2503] gi|303301111|gb|ADM10710.1| two-component hybrid sensor and regulator [Parvularcula bermudensis HTCC2503] Length = 782 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 153/356 (42%), Gaps = 20/356 (5%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--------ALSFFTYITYH 206 + L A + ++A++ + + L + + Sbjct: 158 ISSYLTIATLVFLGACLMAMTLAHWEARAIYSPILRLRTIIQSIRETRDYSARVETVPDK 217 Query: 207 LFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 F + + AE ++ LE R A+ N +KS+FLA+MSHELRTPLN Sbjct: 218 DFGRLIDSFNAMLAEIENRDERLERVVGDLVMARDAADTANKSKSQFLANMSHELRTPLN 277 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGD-------IHRSGQHLLNLINEILDLSRIEAGR 318 AI+ ++E+I + +E E + I +G HLL LIN ILDLS+IEAGR Sbjct: 278 AIINYAEIIIEDLEDVKGDEASTESLETASSDLAKIKSAGIHLLTLINGILDLSKIEAGR 337 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E+ A L +RE ++ A++ ++ ++D + ++ D ++Q ILNLLSN Sbjct: 338 MEIDAYAFDLKMTLREVADTVRPAAEQNGNQLVMRVDDHVGTIVTDGMKLKQCILNLLSN 397 Query: 379 AVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A KFT G + ++ I + D G G+ +I ++ +F Q + Sbjct: 398 ACKFTKDGTVSTEIR-SISVKDVPSVEIVVADTGIGMDAHQIESLFEAFVQADASTTRQY 456 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G GLGL I + ++ GG + S+L G I I+P E S Sbjct: 457 GGTGLGLAITKRMVELLGGTIRVESELGTGSRFIIIVPCQHPAAENIEVEDVSADI 512 >gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tabaci] Length = 905 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 127 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLTCTATLAVRMSRT 186 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 187 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 246 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 247 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 303 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 304 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 359 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 360 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 419 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q + G GLGL I++ ++ Sbjct: 420 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIE 479 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 480 QMGGEIGVDSTPGEGSEFWISLKLPKAR 507 >gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 352 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +S F+A++SHELRTPL AI GF E + + + + ++ I L LI Sbjct: 126 DQMRSEFVANVSHELRTPLTAIKGFVETLLDGAL--EDKLICRRFLTIIEGENNRLTRLI 183 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +++L LS IE+ +L+ + L+ + + + +L +A+EK + + + L V ADE Sbjct: 184 DDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPVKADE 243 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV++NL+ NA+K+T+ GG++ + V G + SI D G GI + +P + F Sbjct: 244 DLVGQVLINLIDNAIKYTSPGGKIVIRVKR-GGDQVFTSITDTGTGIPQESLPRLFERFY 302 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A G GLGL I + I+ +HGG+ + S+L +G L Sbjct: 303 RVDKARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349 >gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759] gi|158449987|gb|EDP26982.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759] Length = 765 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 15/330 (4%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA--EKDDLIAELEV 230 + ++ + + AG+ + F F+ L A E ++ L+ Sbjct: 300 TIGLTTMLMTGFILLLFAGLFYSISRFSIANQKVKFEKRNNELQAMAISEMEEANKNLKK 359 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 AK+++ E + AE N AK+ FL++MSH++RTP+NAI+G +I + E EY Sbjct: 360 AKNIAIEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLIRHN---AGDKEKVIEY 416 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I S QHLL +IN++LD+S+IEAG+ S S++D + E + +A EKN Sbjct: 417 ADKIAISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNTIFHSQANEKNQSF 476 Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYIS 404 V D+ + Q+ NLLSNA+K+T GG + + + Sbjct: 477 IITKGNLKHEWVNGDKVHLMQIFSNLLSNAIKYTQEGGIIQFIAEESETNSSTYGKYHFI 536 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + DNG G++ T+ +F + ++ + QG GLG+ I ++++ + GG + S+ Sbjct: 537 VSDNGMGMSADFKETIFDAFTRAESSVTNKIQGTGLGMAITKNLVESMGGTIEVESEPNR 596 Query: 465 GVEVIAILPNT----RVLNFIPEDNHESTQ 490 G IL RV++ + T Sbjct: 597 GSSFEVILNLKIVENRVVSSTEQIEMHETD 626 >gi|91223693|ref|ZP_01258957.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91191185|gb|EAS77450.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 573 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 24/305 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV + + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG ++++ T+ +E + + + S + LL +I++ILDLS+IE+GR++L+E Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 I+L D V I + A++KN++ + W D + Q++ NL+ NA+KFT Sbjct: 287 WINLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDKQFWIDSTRLSQILFNLIGNAIKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V+V ISI D G GI++ + + T+F QG +I G GLGL Sbjct: 347 DE-GEVKVSVS-EQDAELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486 I + ++ G+ ++S G +P T+ + + ++ Sbjct: 405 ITKHLVEMMRGKIAVKSDEHVGSTFTISIPVLTRCNQNRPVRIETNQPTKAMELLVVEDT 464 Query: 487 ESTQY 491 ES Q+ Sbjct: 465 ESNQF 469 >gi|87311982|ref|ZP_01094091.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87285286|gb|EAQ77211.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 144/284 (50%), Gaps = 14/284 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+ L+ ++ ++E R RA+ N AKS FLA+MSHELR PL AILG +E+++ + Sbjct: 132 ERHRLLVRTIASEIEAEEARNRADAANRAKSHFLATMSHELRNPLTAILGMTELLQEDP- 190 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E ++ + I +G+HL L+N+ILDL++IEAGR + ++ DI +L Sbjct: 191 ---KPEDRQQMLEMIAENGRHLHELLNDILDLAKIEAGRITIELEEANVGDIAASLCNLL 247 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + RA ++ + + +I + + D +RQ++LNL+ NA+KF G + VT+ Sbjct: 248 RYRAADEGLSLRLEIKTPVPHMNTDPIRIRQILLNLIGNAIKFNNQ-GEILVTIDLEKSD 306 Query: 400 G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I + D G GI + T+ F Q + I+ + GVGLGLPI++ I GG+ Sbjct: 307 ETKQVVIDVIDTGIGIPPDRLTTIFEPFVQVAEDIRRRQPGVGLGLPISREIAILLGGEL 366 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNH------ESTQYKCY 494 + S+ G ILP P+ E ++ + Sbjct: 367 TVESEFGVGSRFRLILPVNETEGISPQPIKPADLPVEQADWRSF 410 >gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 858 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 9/300 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 I+ L + L ++ L + L + ++ +LE + Sbjct: 279 IIFREALLLILTVLVGYILLVMILQLLRRRSAQEMELQKKEQERKYQTQLEEQNHKLEIA 338 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + N AK FL +MSH++RTP+NAI+GF+ + N E +Y+ I S Sbjct: 339 LQHEGAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHI---DNREQVLDYLKKISTSS 395 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPS 357 QHLL+LIN++LD+SRIE+G+ ++ E A+ L D+V + ++Q K + +F D Sbjct: 396 QHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSAKRLSLFIDTVDVE 455 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGI 412 + D + Q++LN+LSNA+KFT GG + + + +G IKDNG G+ Sbjct: 456 NEDIITDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRACYEFRIKDNGIGM 515 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +E + F + + S QG GLG+ I ++I+ GG I S+ +G E I L Sbjct: 516 SEEFQKHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIESEPGKGSEFIVNL 575 >gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 903 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 164/370 (44%), Gaps = 24/370 (6%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS-----------NFMLPYAVFLSF 167 + W + ++P + I+ S IA+ A F Sbjct: 285 IGWVAALGIPFVMYSPGFGFIWASLVTGIAMMFGFYVGVCAWLRGFKPAKYFIMAYLAMF 344 Query: 168 FPVVVA----LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 P + A L + ++ + L G AL + L N + ++ Sbjct: 345 LPNMFANMTNLGVLPPIDFNLYLLGLIGTTLDALLLAFAVADKLRLLNNENFELTKNLEE 404 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + ++ + N AKSRFLA+MSHE+RTP+ +I+G+++ I +G + Sbjct: 405 KVFLRTQ---MLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGI---ILGDIE 458 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + + + I ++G H+L +IN+ILD+S+IEA + E+ L + +L + Sbjct: 459 PRNHAKAVQVIAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQI 518 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++K +E + L + D +RQ++LNL +NA+KFT G + + V + Sbjct: 519 RDKGLEFKVLYEFPLPNKIIIDPTRLRQILLNLTNNAMKFT-DYGAITLIVSF-KDEKLI 576 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D+G G+ + + + +F Q + G GLGL I++++ GG ++S++ Sbjct: 577 IRVRDSGIGMTKEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEI 636 Query: 463 REGVEVIAIL 472 +G E I L Sbjct: 637 GKGSEFIVTL 646 >gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 769 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 18/352 (5%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + + L + + + + AL ++ +++ +LA + Sbjct: 1 MTVQAGGLRAWSIAATLAALAAALGAALQRSSLQGPWRAATAVSAVLAVVCGICAAAGAY 60 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSH 258 L+ + E+ +L E + ++ AE LAK FLA+MSH Sbjct: 61 RAARAQHALAQRLEESELARERLQQELQRHGELEQELLRAKQAAEAATLAKGEFLATMSH 120 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN I+ E+I + ++ + S LL ++++ILD S++EA + Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 EL + +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIG 236 Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + + ++D G GIA + + SF Q + Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 936 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 135/264 (51%), Gaps = 9/264 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 682 VTELKETEQRLIEAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSDLLAES----DDR 737 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y+ + + + LL LI++ILDLS+IEAG ++ +++ + E + ++ + Sbjct: 738 EERFGYLKIVQENNELLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIK 797 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ + + +D+ + QV+ N ++NA+KFT+ G + + + Sbjct: 798 NHQVKLIFDEQSPVYYITSDKNRVIQVLSNFINNALKFTSQ-GTITLGYELLPNHELKLY 856 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIAE + + F + + QG GLGL I +S++ GGQ + SK E Sbjct: 857 VCDTGQGIAEEKQKVIFDRFVKL----NTFVQGTGLGLSICKSLVKQMGGQIGVNSKEGE 912 Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488 G P + +N E+ Sbjct: 913 GSCFWFTHPISLTQTEKKRNNPEN 936 >gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ] gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 1193 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 9/291 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + ++ + ++E + + ++ AE N AK++FLA++SHE+ Sbjct: 763 VMFSATTHRTVEGKVDSAFAFITDLSEQKRVEQEIRAAKEAAESANRAKTQFLANISHEV 822 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN I+G S ++ + + + ++Y+ + S Q LL++IN++LDL+RIE+G + Sbjct: 823 RTPLNGIMGMSHLLHMTPLA----DEQQDYLRHLDDSAQSLLSVINDLLDLTRIESGGFG 878 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 ++ L + R+ + + Q AQ K + + ++ + + ++QV+ NL+ NA Sbjct: 879 TEQADFQLDQLARDILRIHQPVAQRKGVLLQLELADGMPGLLRGVPLRLKQVLHNLVGNA 938 Query: 380 VKFTAIGGRV-HVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT G V ++ G+ ++ D+G G+ I + F Q +I Sbjct: 939 VKFTDQGRVVLSISPIIVPGQSLRVRFAVCDSGIGMEPETIKRIFDPFSQADESISRRYG 998 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNH 486 G GLGL I + + GG + S +G ILP L +P D Sbjct: 999 GTGLGLTICRRLTELMGGTIEVESTPGQGSCFTVILPMKTPLGAVVPADAP 1049 >gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 610 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 2/237 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ F+A++SHELRTPL I ++E ++ + ++ I + ++ Sbjct: 371 EKLEQSRREFVANVSHELRTPLTTIRSYAEALDDGALDERQLAD--RFVSVIRNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR ++ + L A S+ +++ E + +K I ID ++ +VW Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D G+ QV+ NL+SNA+K+T GG + ++ IS++D+G GI + ++ + Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLGRIFD 548 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ I+ HGG + S+L EG V LP + Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLPAPDIRE 605 >gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1226 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 10/274 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I EL+ + + + AE K +FLA+MSHE+RTP+N ++G +++ + Sbjct: 689 RDITELKRQSAELVKAKNEAERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL--- 745 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E + Y+ + RS + LLN++N+ILDLS+IEAG+ L E+ ++ +I + I + + Sbjct: 746 -DEEQRSYVKTVKRSSETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQ 804 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A KN E+ + L + V AD+ + QV+ NL SNA+KFT G + V S Sbjct: 805 ANSKNNELTYHLGSDLPTFVIADQTRLLQVLSNLTSNAIKFT-ENGTIRVEASLISKRGK 863 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I +KD+G GI++ I + SF Q + + + G GLGL I++ + + G+ Sbjct: 864 FNRIRIEVKDSGIGISQQNINLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIG 923 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + S + G + + E + Sbjct: 924 VDSTVGMGSTFWFTIELKETSISPTQQTTEVAEI 957 >gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 565 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 95/273 (34%), Positives = 150/273 (54%), Gaps = 1/273 (0%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + + + D L + + ++ ++AEE N KS FLA+MSHE Sbjct: 287 IVIVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHE 346 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFS+ + L MGP+ N Y EY+ I SG HLL++IN++LDLS++EAG + Sbjct: 347 LRTPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHF 406 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +L+ + L + + I ++ +A +E+ ++D D ++QV+ NLL+NA Sbjct: 407 DLAPERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANA 466 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT GG V +++G G +I + D+G G+ +I VL F Q + G G Sbjct: 467 VKFTPAGGHVILSLGRDDGGS-WIKVADSGIGMRPEDIDRVLEPFVQIDSHLSRRNMGTG 525 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGLP+A+ + HGG + S+ +G V L Sbjct: 526 LGLPLAKRFIELHGGTLALASQPGQGTVVTIRL 558 >gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] Length = 1356 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 135/309 (43%), Gaps = 9/309 (2%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + L + F + + + + E+ + E+A+ Sbjct: 762 ILLIVRPPMWLTWWAISLYIIVGLFMMWGVIRWRSATLVKEKLKLEQVVVQRTYELAQQK 821 Query: 235 SDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +AE+ N +S F + +SHELRTPL I+ +E + E K Y Sbjct: 822 EEIA-SQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQY----NQEEPGKRYT 876 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + Q LL LIN+++D S++E+G+ L S SL ++ E I +L AQ+KNIE+ Sbjct: 877 QTILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLAQQKNIELK 936 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 D + +V+ NL+SNA+KFT G + V + W S I++ D G G Sbjct: 937 LTASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHL-WQSPDEVKITVTDTGIG 995 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA ++P V F Q + G G+GL + + ++ H G + S+ +G + Sbjct: 996 IAPADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENKGSTFVVK 1055 Query: 472 LPNTRVLNF 480 P T V Sbjct: 1056 FPFTSVSAS 1064 >gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1300 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 8/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 IAE + A++ R AE + AKS FLA+MSHE+RTP+NAILG +++ + Sbjct: 467 HEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTG- 525 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +Y+ + S Q LL ++N+ILD S++EAG+ EL + L D+++ +++ Sbjct: 526 ---RQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSA 582 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRG 400 AQEK+I++ + P + + D ++Q+++NL NA+KFT G V V + + G Sbjct: 583 AQEKDIDVLFSVAPDVPLELVGDPLRLQQILINLAGNAIKFTETGEVVVSVRLRTLADDG 642 Query: 401 QY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GIA + + +F QG + G GLGL I ++ G + Sbjct: 643 AVLDFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMDV 702 Query: 459 RSKLREGVEVIAI 471 S+ +G Sbjct: 703 ESEPGKGSVFRFR 715 >gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 727 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 14/288 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + L ++ Q E + ++ AE LAK FLA+MSHE+RT Sbjct: 27 LAQRLEEAERARERLQQELQRHGEL----EQELLRAKQAAEAAMLAKGEFLATMSHEIRT 82 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+ E+I + ++ + S LL ++++ILD S++EA + EL Sbjct: 83 PLNGIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELE 138 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381 + +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+K Sbjct: 139 ITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 198 Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V + + ++D G GIA + + SF Q + G Sbjct: 199 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGG 257 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 258 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 305 >gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39] gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39] Length = 984 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|166033331|ref|ZP_02236160.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC 27755] gi|166027688|gb|EDR46445.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC 27755] Length = 1077 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 529 KLVKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 584 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + E E +G I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 585 AIVGLTAIAGANI---ESQERVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 641 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 642 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 701 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 702 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDQRTTRVQGTG 761 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 762 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 794 >gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4] Length = 527 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + + + +T + ++ + Sbjct: 289 ELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAL--EDRDTLEYFLNIMLTESDR 346 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++LDLS++E ++L S L ++ E ++ML+ +A+EK I++ + P L + Sbjct: 347 LQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-T 405 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D +QV +NL++NA+ +T GG V V V I ++DNG GIA E+P + Sbjct: 406 LEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKEERD-EITIKVQDNGVGIAASELPRI 464 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 F + A G GLGL I + I+ H G+ + S G I Sbjct: 465 FERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESSEGVGTTFIV 514 >gi|50552025|ref|XP_503487.1| YALI0E03168p [Yarrowia lipolytica] gi|49649356|emb|CAG79066.1| YALI0E03168p [Yarrowia lipolytica] Length = 1147 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 24/322 (7%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIA 226 V+ + ++A L T + IT + + E D L Sbjct: 421 AQVSDVDGLWKEITTNVNTMAANLTTQVRALVQITAAATDGDFTRFITVEASGEMDALKT 480 Query: 227 ELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ E R+ AE N AKS FLA+MSHE+RTP+N I+G +++ + Sbjct: 481 KINQMVLNLRESIQRNTAAREAAELANRAKSEFLANMSHEIRTPMNGIIGMTQLTLDTEL 540 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E + +H LL +I++ILD+S+IEA R + + A SL V + L Sbjct: 541 TQY----QREMLSIVHNLANSLLTIIDDILDISKIEANRMTIEKIAFSLRGTVFGALKTL 596 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++A EK +++ K+D + + D +RQVILNL+ NA+KFT G V ++V Sbjct: 597 SVKANEKPLDLVYKVDNTFPDNLVGDSFRLRQVILNLVGNAIKFT-ESGEVALSVRKADD 655 Query: 399 R--------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + D G GI ++ + +F Q + G GLGL I++ ++ Sbjct: 656 QRPGSPDEMMIEFCVSDTGIGIQSDKLDVIFDTFCQADGSTTRKFGGTGLGLSISKRLIN 715 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 GG ++S+ +G + L Sbjct: 716 LMGGDIWVKSEYGKGSQFFFTL 737 >gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] Length = 576 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 8/280 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ T+ ++ + + + S + LL +I++ILDLS+IE+G ++L+E Sbjct: 231 NSVLGMLDILRQSTL----SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 I L D V I + A KN+ S W D + Q++ NL+ NA+KFT Sbjct: 287 WIHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V+V +SI D G GI+ + + T+F QG +I G GLGL Sbjct: 347 DS-GSVSVSVA-EENDEVVVSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482 I + ++ G+ ++S+ EG + +P TR P Sbjct: 405 ITKHLVEMMRGEISVKSRENEGSDFTIRIPVLTRYNQSRP 444 >gi|88857621|ref|ZP_01132264.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas tunicata D2] gi|88820818|gb|EAR30630.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas tunicata D2] Length = 927 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 162/394 (41%), Gaps = 24/394 (6%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSAT--LLIALSISALSNFMLPYAVFLSFFPVV------- 171 W ++ L++ + A L++ + + L + + Sbjct: 419 WHVVLLLDRSHIDVLAAKSWLKAMSILMLVTLLVFIFIARLSRWLVAPIELLTQKMQDFK 478 Query: 172 -------VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L ++ + L + + F + K+ +L Sbjct: 479 PENNAKQSTLIERSWFEVDTLHQQFIELANSLNVNFQALAASNQKNEELNNKLSEFNHEL 538 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E+E ++ AE+ N AKS FLA+MSHE+RTP+N ++G ++ + P N Sbjct: 539 AIEVERKTFELTQSVHIAEQANKAKSIFLANMSHEIRTPMNGMMGMLSIVLKQ---PSLN 595 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I S Q L+ ++N+ILD S+IEAG+ + ++ + L + +E + + + Sbjct: 596 PDVVDKLQLIQSSAQTLMQILNDILDFSKIEAGQLTIEQAPVDLKAVFKESCDIFLMSSI 655 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N+E + +L + D +RQ+I+NLL+NA KFT G + V V + Sbjct: 656 KPNVEFRLEGIENLPDQLLCDALRLRQIIVNLLTNAGKFTP-CGHIKVLVSYDEE-YLRF 713 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA+ + + F Q ++ G GLGL I ++ G ++S+ Sbjct: 714 SVADTGIGIAKEKQALLFNEFSQADVSTTRKYGGTGLGLAICSRLVTLLEGNIELQSEEG 773 Query: 464 EGVEVIAILPNTRVLNFIPEDN--HESTQYKCYA 495 +G LP D ++S + ++ Sbjct: 774 KGSCFTVSLPMKAPEELKEHDEPLNKSLDFTGHS 807 >gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 965 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 2/275 (0%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + ++ + ELE + + E KS+F++++SHEL Sbjct: 655 ARMIKALEEQEARLECQNSMLARQNRELERRDASLKLQNLQLLEAARLKSQFVSTISHEL 714 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+GFS+++ + G L + + + I + QHLL LI +++DLS+IEA E Sbjct: 715 RTPMNAIIGFSQLLLRQRQGSLTH-QQADIMERIVNNAQHLLTLIKDMIDLSKIEAVCLE 773 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L+ ++ L +++E I + A +K++ ++ + + V D +RQ+++NL+SN + Sbjct: 774 LTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLKNPIVINDSLRLRQILVNLVSNGI 833 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GRV V V S ++++D G GIAE ++ + F Q G GL Sbjct: 834 KFT-EMGRVEVVVKEISTDWLMLTVRDTGIGIAENDLEHIFEEFQQIDQTTTRKYSGTGL 892 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GL I +S++ G + SKL +G P Sbjct: 893 GLAITESLVKLMQGTITVESKLGKGSTFHVKFPRR 927 >gi|119498321|ref|XP_001265918.1| two-component osmosensing histidine kinase (Bos1), putative [Neosartorya fischeri NRRL 181] gi|119414082|gb|EAW24021.1| two-component osmosensing histidine kinase (Bos1), putative [Neosartorya fischeri NRRL 181] Length = 1336 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 725 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 784 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 785 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 841 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 842 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 900 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 901 TIRKSDREQCAPNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 960 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 961 SKRLVNLMGGDVWVTSEYGHGSTFHFT 987 >gi|254457972|ref|ZP_05071399.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085365|gb|EDZ62650.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1040 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 16/308 (5%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 D +L L FF + T + + ++ + + + + E+ +E + A Sbjct: 505 DYTLVWQLVGIFIFFIFGTLYWNRKLSVEIAKRKQAQEELFEV---NKKLEEAKDIAVNA 561 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FL++MSHE+RTP+NAILGF+E+++ ++ K +I I SGQ LL LI Sbjct: 562 NKAKSDFLSNMSHEIRTPMNAILGFAELLDKRV----EDKKSKSFIKTIRSSGQTLLYLI 617 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+IL+LS+IE+G+ EL +S +++ +I E I + +L+A++K +++ I+ + + D Sbjct: 618 NDILNLSKIESGKLELVKSRVNIQNICEETINIFKLQAKQKGLQLQLDINKEMPKAILID 677 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYISIKDNGPGIAEGEIP 418 + ++++NL+ NA+KFT G V + V TS I ++D+G GI + Sbjct: 678 SIRLSEILINLIGNAIKFTEE-GYVKLVVNVDEVYEHTSKVDLTIRVEDSGIGIEKINQD 736 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F Q G GLGL I++ + GG + S L +G I + + Sbjct: 737 KIFNIFEQTENQDVKKYGGTGLGLAISRKLSKLMGGSLEVESVLGKGSSFIIEF-KSIDI 795 Query: 479 NFIPEDNH 486 + ++ H Sbjct: 796 ASVSDEEH 803 >gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] Length = 1234 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 101/490 (20%), Positives = 188/490 (38%), Gaps = 31/490 (6%) Query: 13 GLLISPTGDHLGLEYPSKMDFDREIITLHVESL-FRVSPILPLFVLLVANI-----GTWF 66 I L F + TL ++L FR+SP + + + Sbjct: 289 ASDIQAATGLLHNAAALSKRFAERVATLEAQTLSFRLSPSAEIADAVGTLLDELSRVARV 348 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 + + + + V + R + + GL Sbjct: 349 LPSSVGTQANATPVTVKDQIAGYRAAFARFRQASNALSDARDQVRNEARSAGLLVARFAG 408 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + ++I + F++ V +A + + + + Sbjct: 409 QARSDALVHNDRGMLATIIAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLRT 468 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL------------------ 228 + + T ++ ++I +AE + ++ Sbjct: 469 GIASVERGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTVTLHHQ 528 Query: 229 ----EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E + R +A+ N AKS F+A++SHELRTPL IL E + T+ P + Sbjct: 529 TEVLEAQAIELIQARNQADSANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLVPAD- 587 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I R+ L+N +N+ILD S+ EAG++E+ + + L + V + A+ Sbjct: 588 --WRVQIERAQRNALRLMNRVNDILDFSKAEAGKFEVCPTLVDLNNAVGVLAEDAAMVAE 645 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + IDP+L +V+ D + +++LNL+SNA+KFT GG VH+ V G ++ Sbjct: 646 GKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELA 705 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GIA E+P + F Q + G G+GL + + ++ GG+ + S+ Sbjct: 706 VQDSGIGIAPEELPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVSSEPGR 765 Query: 465 GVEVIAILPN 474 G LP Sbjct: 766 GSCFFVRLPL 775 Score = 95.0 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 14/163 (8%) Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 +S+ +V + + M + + + + K L + D + +++NL+SNA K Sbjct: 1080 ETVSVAGLVDDALRMSAGSLERQGVTL-VKRIADLPLLPLDRHRVLLILVNLISNA-KHA 1137 Query: 384 AIG-----GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G V + IS+ DNG GI + + S + ++G Sbjct: 1138 LEGVADRSPCVTLDACLVDASVLRISVTDNGNGITPEHLARIF------SHGFTTRKEGH 1191 Query: 439 GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNF 480 G GL GG+ + S +G +P + Sbjct: 1192 GFGLHSCALAAQEMGGRLTVHSDGAGQGATFTLDIPLEAAPDQ 1234 >gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1] gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1] Length = 1068 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E + I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L D+V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 633 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785 >gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 929 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ +++ E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 681 ITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDT----EDM 736 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EYI + + LL LI++ILDLS+IEAG +E + + + + + Q++ Sbjct: 737 EERCEYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVP 796 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + +E+ PS +V +D + QVI N ++NA+KFT+ G +HV Sbjct: 797 Q-GVELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSS-GSIHVGYEKKEEG-VEFY 853 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI++ ++ + F + S G GLGL I +SI+ GG + S+ R+ Sbjct: 854 VSDTGIGISKEQLTHIFERFVKL----NSFIHGTGLGLSICKSIVEQLGGVIGVDSEERK 909 Query: 465 GVEVIAILP 473 G +P Sbjct: 910 GSRFWFTIP 918 >gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 874 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 116/433 (26%), Positives = 197/433 (45%), Gaps = 13/433 (3%) Query: 54 LFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 LL A + + W T +Y + + Sbjct: 449 ALTLLTATGHGITVEARLMSAPWEGGTAMLYVLHRLDAVTDERIRQAELALRQAENAERE 508 Query: 113 G-QIAIGLCWTLLTL----VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 I ++ + P +A + +I+ L A Sbjct: 509 LRAILDTATDGVVLIDKAGTILSMNHPAEALFGFNAGDVQGEAITLLLAPESHRAAIDYL 568 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + + + + + + A D I + Sbjct: 569 DGLASNGVASVLNDGR------EVIGRVREGGLIPLFMTMGRIGDDPTKFCAVLRD-ITQ 621 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + A+ E + AE NLAKS FLA +SHE+RTPLNAI+GFSEV+ E G + N+ Y Sbjct: 622 WKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIENQRY 681 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++Y+ DIH SG+HL++LIN++LDLS+IEAG+ +L+ ++++L +IV++C+ ++Q +A + Sbjct: 682 RDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCMAIMQPQANRER 741 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I + + L V AD + +RQ++LNL+SN+VKFT GG+V ++ T + ++D Sbjct: 742 IVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLTEQGEVVLRVRD 801 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++E +I + F Q + + ++ G GLGLP+ +++ + F IRS + G Sbjct: 802 TGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASFNIRSAVDVGTI 861 Query: 468 VIAILPNTRVLNF 480 V P+TRVL Sbjct: 862 VEITFPSTRVLAE 874 >gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 561 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 145/291 (49%), Gaps = 4/291 (1%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ +L + E + ++ AE N KS FLA+MSHELR+PL Sbjct: 151 RNWNEQDLALLKIACDTIGSSLSNERYREELISAKEMAERTNAYKSEFLANMSHELRSPL 210 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GFS++IE + E EY G I +G+HLL +I EILDL+RI+ G+ L + Sbjct: 211 NCVIGFSDLIEQDVEEKCF-ERIGEYAGLIKAAGKHLLGMITEILDLARIDTGKMRLEKR 269 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L +++ ML+L A+EK + I DP ADE+ + QV+ NLLSNA+KF++ Sbjct: 270 EVHLDELLELIASMLKLPAREKRLSIELDCDP--IRFEADERRLHQVLHNLLSNAIKFSS 327 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G R+ V+ G I + D G GIA + + F Q +G GLGL I Sbjct: 328 EGSRIGVSA-QGQGEIVEIVVWDEGRGIAPDWLDRIFEPFEQVESGDSELGEGAGLGLAI 386 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + I+ HGGQ + S+L G LP + T + YA Sbjct: 387 VKRIVDLHGGQVSVESELGVGSRFSVRLPALAPKPAKENEPALDTASREYA 437 >gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1178 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 12/316 (3%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + + V +L + + ++L AE+ L E Sbjct: 606 TPEVWLGVPIRVRQEVLGVMAVLHYTDATRYGRKDAELLLSVAEQLALGVERRRTLDALC 665 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 ++ A+ N AKSRFLASMSHE+RTP+NAILG +EV + +E ++YI + Sbjct: 666 AAKEEADRANEAKSRFLASMSHEIRTPMNAILGLTEVTLRTRL----SEEQRDYIDTVRD 721 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S +HLL+++N+ILD S+IEA + + L +++R I L A++K + + ID Sbjct: 722 SARHLLDILNDILDFSKIEACQMTVDVVDYDLHELLRRVIKTLGGAARDKGLWLTLDIDV 781 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGP 410 + V D +RQV++NL+ NAVKFT GG V V + + D G Sbjct: 782 GVPRNVRGDPGKVRQVLVNLVGNAVKFTEAGG-VTVRAALMMPGAGGLPLLGVEVADTGI 840 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI V SF Q + G GLGL I++ + GG +RS G Sbjct: 841 GIPAEMREAVFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRSTPGGGSLFTF 900 Query: 471 ILPNTRVLNFIPEDNH 486 + +PE + Sbjct: 901 TV-AFVPGASLPEADT 915 >gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28] gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28] Length = 883 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFNPIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891] gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891] Length = 886 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 15/343 (4%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-----GMLATALSFFTYITYHLFKSNV 212 L L+ +V A+ ++ ++ + +LS L + V Sbjct: 295 SLGLVSLLTILVMVFAIKLAQRLTTNLKAVLAFLSHDDATSLPSLSKSVRGNDELNQFAV 354 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ E+ L AK +++ + A AKS FLA+MSHE+RTPLN ++G +E Sbjct: 355 EVERLTIERQQAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITE 414 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 V+ + N + K+Y+ I S Q LL+LIN++LD S+IE+G +S + + + + Sbjct: 415 VLSDTDL----NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESI 470 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + ++ +A+EK I++ I V D+ +RQV++N +SNAVKFT G V + Sbjct: 471 YDIASIVAPQAKEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNS-GVVSL 529 Query: 392 TVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + I ++D G GI E + + F Q + G GLGL I+ Sbjct: 530 QLSSKHVGENIIEMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQ 589 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 ++ G Q + S EG L + P + Sbjct: 590 LVELMGSQIELTSIKGEGSRFYFTLTLPIDVYHYPTKEEDKVD 632 >gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] Length = 652 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 272 HDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 327 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + EY+ I ++ LL LIN+ILDLSRIE+G+ E++ + + ++ E + +L+ Sbjct: 328 DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLK 387 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + I + + D + QV+ N LSNA+K T G + + + G Sbjct: 388 -MKTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIKNTHE-GTITLGLE-VCGEWLK 444 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIA+ ++P + F + QG GLGLPI QSI+ GG+ + S++ Sbjct: 445 VYVTDTGCGIAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLGGKISVESEV 500 Query: 463 REGVEVIAILPNTR 476 G + LP + Sbjct: 501 GVGSTFVMTLPYRQ 514 >gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 895 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 15/293 (5%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A T L +N ++ S E + A+L++ KS +E + KS FL Sbjct: 440 LQASGRTTMQAEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFL 499 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHELRTPLN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS+ Sbjct: 500 ANMSHELRTPLNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSK 558 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVI 372 +EAG+ ++ A ++ D+ A +KN+E + ++ + + D K + Q+I Sbjct: 559 VEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQII 618 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTV 420 NLLSNA KFT G V + IS+KD G GIA+ + + Sbjct: 619 KNLLSNAFKFTEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLI 677 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +F Q A G GLGL I + GG + S + EG +P Sbjct: 678 FEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 730 >gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 856 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 146/255 (57%), Gaps = 9/255 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + A++ N AKS+FLA+MSHE+RTP+ +ILG++++I + + +E + ++ Sbjct: 444 ERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI----DEDTRSHV 499 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I R+G LL LIN+ILDLS+IEA R E+ + +++LI ++ + + ++Q+RA EK++EI Sbjct: 500 ATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLRIMQVRAAEKDLEIR 559 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKD 407 + + AD K +RQ+++NL+ NAVKFT G V V V + + D Sbjct: 560 VDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEA-GHVRVAVRAEQIDLRTRVHFDVVD 618 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI++ + + F QG +I G GLGL I+Q ++A GG+ RS++ EG Sbjct: 619 TGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSRVNEGSC 678 Query: 468 VIAILPNTRVLNFIP 482 + +V P Sbjct: 679 FSFCIDAGQVDCTSP 693 >gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1771 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL++ ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + + Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K Y+ I R+ Q LL++IN+ILD S+IEAG+ ++ L ++ + M + Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K +E+ + P++ ++ D + QV++NL++NA+KFT G V +++ + Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D+G G+ + + + SF Q + G GLGL I + ++ GG + Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 1251 SQFGHGSTFYFT 1262 >gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1290 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E A R E N K FLA +SHELR+PLN ILG++++++ + L Sbjct: 899 IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL-- 956 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+ + LI+++LD+SRI G+ L+ + L+ + + ++L A+ Sbjct: 957 -KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAE 1015 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K+I I ++ + V D ++QV+ NLL+NAVKFT GG++ V++ G +I Sbjct: 1016 SKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERV-GSLAHIQ 1074 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 ++D G GI+ +P V F Q G+GLGL I + ++ HGG + S Sbjct: 1075 VRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGEG 1134 Query: 464 EGVEVIAILPNTRVLN 479 G LP V Sbjct: 1135 LGTTFTVKLPLIAVSQ 1150 >gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 370 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 93/251 (37%), Positives = 138/251 (54%), Gaps = 3/251 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ + AE + AKS LA++SHELRTPL +I+GFS+++ G L Sbjct: 113 RDITTRKQAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKL 172 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NN Y+ IH+SGQ+LL+LIN++LDLS+IE+G+ EL ISL +I+ + + L Sbjct: 173 NN-NQINYLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPL 231 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A EK + + KI+P + V D +RQ++ NL+ NA+KFT G + V + Q Sbjct: 232 ASEKGLTLDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTN-NGSITTEVDFVDNNYQ- 289 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI E + + SF Q + K G GLGL + + ++ HGG + SK Sbjct: 290 FSVIDTGIGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKY 349 Query: 463 REGVEVIAILP 473 EG +P Sbjct: 350 GEGSRFTFTIP 360 >gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 589 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE + + F+A++SHELRTP+ + G+SE I + + E KE+ I+ Sbjct: 353 RDMTEERKLDKLRDDFIANVSHELRTPVAMLQGYSEAIIDDI--AASEEEKKEFAKIIYD 410 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+NE+LDL+R+EAG + +S + A+EK I++ + Sbjct: 411 ETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSD 470 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 S ++ D + QV+ NL+ NA++ T+ G V V + G Y+ ++DNG GI + + Sbjct: 471 SDLTLEIDADRIEQVLTNLIDNALRHTSSNGYVKVK-EEEAPGGVYVHVEDNGSGIPDED 529 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +P V F + A + G GLGL IA++I+ HGG+ ++SKL EG LP Sbjct: 530 LPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLPKK 588 >gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1101 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 11/282 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + I E + A+ + RAE + AKS FLA+MSHE+RTPL Sbjct: 651 RAVGRVEEHGEQLILGTLQDITERKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPL 710 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ILG +++ +G +Y +SG+ L L++++LDLSRIE+G+ ++ Sbjct: 711 NGILGMLQLMHTTRLGA----EQADYADIAIQSGRRLARLLSDMLDLSRIESGKLDIRHV 766 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L V++ + + + + I + ++DP+ + D ++QV+ NLL N+ KFT Sbjct: 767 PFQLAAAVQQVVELFLPISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFT 826 Query: 384 AIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 IGG + + V +I D G GI E ++ + F Q S ++ + QG Sbjct: 827 RIGG-ITLAVHRLPPPHAPACRVLFTISDTGCGIPEDKLGELFEPFTQASNGMRRSHQGA 885 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GLGL I + ++ GG+ I S+ G LP T V + Sbjct: 886 GLGLSICKRLVHLMGGEITIESEEGAGTTACVSLPFTLVPDT 927 >gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 609 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ F+A++SHELRTPL I ++E +E + + + ++G I ++ Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ L + +++++ + + ++K+I ++ P +S+ Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D G+ QV+ NL+SNA+K+T GG + + T +S+KD G GI + ++ + Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ HGG ++S+L +G V LP Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601 >gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1391 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 18/274 (6%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L + E R++AE N K FLA +SHELRTPLN ILG+ ++++ Sbjct: 969 RKQLEQQREHLLIQEQTAREQAELANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFE 1028 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P E + I R+ Q + LI ++LD S+I G+ L + + L I+ + ++ Sbjct: 1029 P---ARAMEALRTIERNAQLQVQLIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVR 1085 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 L A+ K I++ +D VW D ++QV+ NLLSNA+KFT GG+V V + G Sbjct: 1086 LAAEAKTIQLQTCLDQHPILVWGDANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSP 1145 Query: 399 ------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 I + D G GIA +P V F Q A+ G+GLGL I + Sbjct: 1146 GKRAHPMPVNTSSYAQICVIDTGKGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVK 1205 Query: 447 SIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479 I+ HGG+ S L EG LP + Sbjct: 1206 QIVEMHGGRIWAESPGLGEGATFTVRLPLMKEEQ 1239 >gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] Length = 1197 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 9/264 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A LE + R A N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 458 AALERFAAKLAVARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + YI + S LL LIN+ILD S+IEAG+ ++ + L +++ ++ LRA E Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASE 573 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 + +E+ ID + + + D + Q+++NL +NAVKFT G ++ + V +G Sbjct: 574 RGLELLIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGDDLVL 633 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S++D+G G+ + + + F Q + G GLGL I++ + GG ++S+ Sbjct: 634 QFSVEDSGIGMTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSE 693 Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485 +G + TRV + + +++ Sbjct: 694 AGKGSCFSFSI-ATRVSHALKQED 716 >gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1329 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 10/240 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ AE AKS FLA+MSHE+RTP+NAI+G + +I+ + +E +I I + Sbjct: 574 AREIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETKL----DERQLGFIERISHA 629 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL +IN ILD S+IEA + +L + + L DI+ E + ++R + IE+ IDP Sbjct: 630 ATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALAEVRIAGRPIELIVDIDPE 689 Query: 358 LSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGI 412 + V D + Q+ NL++NA KFT G + + + + S+ D G G+ Sbjct: 690 IPEVLMGDPLRLSQIFTNLINNATKFT-ESGSITLQIKQEQVIGNNIKLSFSVIDTGIGM 748 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + +F Q +I G GLGL I++S++ GG+ + S+ +G + + Sbjct: 749 TTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGELQVESEYGKGSKFFFTI 808 >gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1436 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 680 ISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTP--- 736 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++YIG +H +G LL +IN+ILD S+IEAG+ +L L +++ + +A Sbjct: 737 -KQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAH 795 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK +E + P + + D + Q++ N ++NAVKFT G + + + G Sbjct: 796 EKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTER-GEIRLNIELIERTGEKL 854 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G G+ + + F Q ++ G GLGL I + ++ GG+ + Sbjct: 855 QLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLE 914 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 915 SEPGAGSTFYFT 926 >gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 706 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 137/273 (50%), Gaps = 3/273 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L + + +A AEL + + E+ + AKS+FLA+MSHE RTP Sbjct: 432 ARLLERVKEGSVHLEARVQAATAELAEQNEMLRRQAIQVEQASAAKSQFLANMSHEFRTP 491 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILG++ ++ G L N K + I +G+HLL +INEILD++RIEAGR L+ Sbjct: 492 LNAILGYTNMLLQGVSGEL-NPAQKRNLTRIDSNGRHLLEVINEILDITRIEAGRMPLNL 550 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S + ++++E + + + + + P + +V++D + ++Q++LNLLSNA+KFT Sbjct: 551 SDFGIPELLQEVMAEMDPIIARSKLTVSAHLGPRVPAVYSDRQKVKQIVLNLLSNALKFT 610 Query: 384 AIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V V + + IS+ D G GI + F Q + A G GLGL Sbjct: 611 HE-GSVQVQAEYVAATSTLTISVTDTGIGIDPANQEKIFEDFQQVDSSPTRAYGGTGLGL 669 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + + GG+ ++S EG P Sbjct: 670 SICRRLATMLGGRVTLQSTQGEGSTFTLHFPRR 702 >gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1771 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL++ ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + + Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K Y+ I R+ Q LL++IN+ILD S+IEAG+ ++ L ++ + M + Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K +E+ + P++ ++ D + QV++NL++NA+KFT G V +++ + Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D+G G+ + + + SF Q + G GLGL I + ++ GG + Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 1251 SQFGHGSTFYFT 1262 >gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1101 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 126/253 (49%), Gaps = 9/253 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 +++AEE N AKS FL+SMSHE+RTP+N I+G E+I + ++ Y+ I S Sbjct: 593 KEKAEEANKAKSLFLSSMSHEIRTPINGIIGAIELIPKHNL----SDEISSYLNIIKSSS 648 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL LIN+ILDLS+IE+G +L I +++ ++ K + Sbjct: 649 EHLLMLINDILDLSKIESGYLKLENIPFEPIKVLKRVRSIIYPTTIPKGLTFSIDYPDRG 708 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAE 414 V+ D + QV++NL NAVKFT G V V + S I S++D G GI E Sbjct: 709 ICVYGDPHRLSQVLINLSGNAVKFTEK-GEVEVKMEILSESETEIRLKFSVRDTGIGIPE 767 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ + F Q + G GLGL I+Q+++ GG + SK+ EG + Sbjct: 768 DKMDKLFKPFSQIDDSHTRKFGGTGLGLVISQNLVKMFGGIIKVESKVGEGSIFSFEIDF 827 Query: 475 TRVLNFIPEDNHE 487 + ED+ E Sbjct: 828 KKAEFKRCEDSEE 840 >gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 510 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 122/476 (25%), Positives = 210/476 (44%), Gaps = 8/476 (1%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D G + S+ + E+ + L R++ + ++ V ++ T + + T+ Sbjct: 10 DRTGESWLSRTSGNGEVRGQELAILRRLALASSVALVAVPAGLSFITSPAVALPVGVATV 69 Query: 81 AVYAANLSLG-KKVMNSDIKIGEVYVWR--IWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 ++G + V L+ + A GL LL + T Sbjct: 70 CAAFLFSAVGSIALSRQRPASDAVEAVVVEHRDLMLEAASGLV--LLFDPQGSVTTVGGR 127 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + + + S + L V + + + + A + Sbjct: 128 DRAEFLSWMRDPSGRGFIEQVHISDRILFLQAVDTLRQGRDALGVDLRLERSAVIEGNDQ 187 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + L+ + I+ + + +D AE N AKSRFLA++S Sbjct: 188 FIHIRMEMSARRDGEGRLTSIVSQSRDISYDQQLRDEADRKTAEAESANDAKSRFLAAVS 247 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLNAILGFS+++ E G L N +EY+G I +SG HLL+++N +LD+S+IEAG Sbjct: 248 HELRTPLNAILGFSDILSGEYFGKLENNRQREYVGLIRQSGAHLLSVVNTMLDMSKIEAG 307 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 RYEL + + C ML L+A+EK + + ++ L + AD++ ++QV++NL+ Sbjct: 308 RYELVPEPFPIEASIGACEAMLALQAKEKGLTLTSRVQRGLGDIVADQRAIQQVLINLVG 367 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GG V + + +S+ D G GIA + ++ F Q G Sbjct: 368 NAIKFTDAGGAVTIDAAM-ADGMLKLSVCDTGIGIAADRLASLGQPFVQIQNDYTRRYAG 426 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHESTQY 491 GLGL + + ++ HGG F I S EG + ++P + V+ P D + + + Sbjct: 427 TGLGLSLVKGLVGLHGGSFAIASAPGEGTVITILIPLDGSGVVVQQPVDANRTVDF 482 >gi|153869957|ref|ZP_01999457.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Beggiatoa sp. PS] gi|152073580|gb|EDN70546.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Beggiatoa sp. PS] Length = 784 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 26/287 (9%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLN 265 ++ E A+LE A +++ R+ AE N AKS FLA+MSHELRTPLN Sbjct: 493 TQIAISIENAFFYAQLEQAHFAAEQARRIAEQTRQNVEAANRAKSTFLANMSHELRTPLN 552 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILG+SE+I+ E N+ + + I +G LL +I++ILD+S+IEA + EL S Sbjct: 553 AILGYSEMIQEEAQESGYNDILPD-LDKIQIAGIQLLGIISDILDISKIEAEKLELDLSE 611 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 ++ +V E + +QL + + + L ++AD + Q++LNLL+NA KFT Sbjct: 612 FAVTYLVEEMVTTIQLMIEMGGNTLNIEWGNELGMLYADYHKVGQILLNLLNNAGKFTNH 671 Query: 386 GGRVHVTVGWTS-----------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 G + +T+ + I D G GI ++ + F QG Sbjct: 672 -GTITLTITRKKLSLGKGNNKSNSKNKAFSEWIFFQIADTGVGIPPEQMNHIFEPFTQGD 730 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ GG L+ S++ +G LP Sbjct: 731 NSSTREYGGTGLGLTISEYFCRAMGGNLLVSSEVGKGSVFTVQLPIR 777 >gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] Length = 917 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N L L T+ LA + + L S + Sbjct: 194 INGPLSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+ I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1116 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 11/270 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ +++AE AKS FLA+MSHE+RTP+N I+G S+++ + Sbjct: 710 HDITATKQAEQDLIHAKEKAEAAYQAKSEFLATMSHEIRTPMNVIIGLSDILMETPIDH- 768 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++++ + ++ + LL+L++ ILDLSRIEA + L + ++L +V E + M+ + Sbjct: 769 ---EQRDHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIV 825 Query: 343 AQEKNIEIF--QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396 A +K + + DE +RQ+++NL+ NAVKFT G + VT+ Sbjct: 826 ADQKGLRLESQVTQATDDYWSLGDESRIRQILVNLIGNAVKFTEK-GSIWVTLELFTDTL 884 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + +KD G GI + T+ F Q + G GLGL I + I+ GG+ Sbjct: 885 ERTLVRLCVKDTGIGIGPEHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKV 944 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + S +G LP V +++ Sbjct: 945 WVESNPSQGSLFCVELPFIPVQPIALKEDT 974 >gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 609 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ F+A++SHELRTPL I ++E +E + + + ++G I ++ Sbjct: 372 EKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAL--EDKQMGPRFVGVIQNETGRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LSR+++ L + +++++ + + ++K+I ++ P +S+ Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D G+ QV+ NL+SNA+K+T GG + + T +S+KD G GI + ++ + Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ HGG ++S+L +G V LP Sbjct: 550 RFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601 >gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 847 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 156/392 (39%), Gaps = 25/392 (6%) Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 V R L G +CW + + + S + + +S L Sbjct: 182 ISVRHSRQRLGFGLALGAVCWLISDVAYY--GLDVTEPVAGSNDIGWMVGAILMSTATLR 239 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT-----ALSFFTYITYHLFKSNVKIL 215 + + + + + L A A+ ++ + Sbjct: 240 PVSPPTPETAEPPSHRAPLGRLGIAIVPLLVPPAIMIVNQAIGRSPHVVEVSVGMTALVA 299 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ VA+ R A E + +KS FLA+MSHE+RTP+N ++G + ++E Sbjct: 300 IAFVRMGRMLQWEVVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLE 359 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E ++Y + + L+ +IN+ILD S++EAGR +L L+ +V E Sbjct: 360 ATDL----DERQRQYAEGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEV 415 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV- 393 ++ AQ K +E+ P L + D +RQV+LNL SNAVKFTA G V V Sbjct: 416 AELIAEPAQSKGLELLAYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTAR-GEVLVRAS 474 Query: 394 -----------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G +G + D G G+ E + + F Q + G GLGL Sbjct: 475 LEASLQDGPEAGAEAGVVVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGL 534 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I++ ++ GGQ + S+ G LP Sbjct: 535 AISEHLVTAMGGQIGVDSRPGLGSTFWFTLPL 566 >gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 940 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 105/476 (22%), Positives = 175/476 (36%), Gaps = 42/476 (8%) Query: 36 EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF-PMWSLITLAVYAANLSLGKKVM 94 ++ + + + + G F + W+ + + Y + Sbjct: 181 YLLRRKDRAPLFCALLCLFIAARASVTGEIFLLSYFPDLSWNAVYIVQYLGFYLALPAFL 240 Query: 95 N--SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + E+ A L+ TW + +Y LL L Sbjct: 241 QFMRILYPDEMPAKLAAAAWAAGAASSLTVLIAPPSVYTWLMPFYEVYAVVLLLFVLGPV 300 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-------ITY 205 + F P AL + V + L G F + ++ Sbjct: 301 LIRAIARGREGAALFLPGTAALVLAVVNDSLVSNDILWGPYIGDFGVFVFIFFQCCVLSM 360 Query: 206 HLFKSNVKILSCQAEKDD-------------------------LIAELEVAKSLSDETRK 240 +S + E D L ++ S ++ Sbjct: 361 RFSRSFATVEKLSEEMRDKNTELIKLDGERCEALKRLEEYSRNLENIVQERTSALARAKE 420 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A+ + AKS FLA+MSHE+RTP+N +LG E++E + +E +EY+ + Sbjct: 421 EADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEATPL----DEEQREYVSVVRDCSNL 476 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL+LIN++LDLSRIE G L E + R + +++ A K ++ + PS+ Sbjct: 477 LLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEFSPSVPP 536 Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D +RQV+LNLL+NAVKFTA G + + + +G ++D GPGI E + Sbjct: 537 VLRGDPVRLRQVLLNLLNNAVKFTAK-GCITLRA-YVTGNEITFEVEDTGPGILEEIRGS 594 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F +G S G GLGL I + ++ GG + G +P Sbjct: 595 IFKPFTRGHSGTDSMHGGAGLGLSICRRLVELMGGGISFETTAGVGSLFRFTVPLK 650 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 169/355 (47%), Gaps = 10/355 (2%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L + ++ +L F + + V +L ++ Sbjct: 581 LSVFGLLAGGLAVVLWMLYFQQMADLSGSGLDAPASLRSVFIKLFCLLLVVVGVGAWWLV 640 Query: 205 YHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 V + + + L+ E+E + ++ AE NLAKSRF+A MSHELR Sbjct: 641 LTNESRAVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELR 700 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+ILG+++++ + K+ IG I RSG+HLL+LI+ +LD+++IEAG+ L Sbjct: 701 TPLNSILGYAQILH---VDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRL 757 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + ++L + + + M +A++K + L V AD+K +RQ+++NLL NAV Sbjct: 758 ASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAV 817 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG V + + + + Y + D G GIA+ + + F + S A + G GL Sbjct: 818 KFTDHGG-VTLRLRY-AREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGL 875 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GL I++ ++ GG+ ++S++ +G + V P E Q YA Sbjct: 876 GLAISRMLVHIMGGELSVQSQVGQGSSFHLKIYLPEVHVPRPRIKLED-QMSGYA 929 >gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ER-3] Length = 2346 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q L E E +++ E + E+ Sbjct: 1777 VGISLANAFLYRNASKVSAANAAMVEAQKRALALAREAERKSKVAEAEAKHNVKLKEDAA 1836 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ ++ + Y+ I LL LIN Sbjct: 1837 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADTLLTLIN 1892 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ ++ ++ + +D + V D Sbjct: 1893 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMGD 1952 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V T I + D G GI+ ++ + Sbjct: 1953 PVRLHQIFMNLLSNSYKFTPK-GSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2011 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++S+ G V L Sbjct: 2012 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2064 >gi|149927444|ref|ZP_01915699.1| PAS [Limnobacter sp. MED105] gi|149823936|gb|EDM83161.1| PAS [Limnobacter sp. MED105] Length = 489 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 12/344 (3%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 L ++ A+ + ++ V L ++ L L + Sbjct: 151 LDYGVLRFTFAVDAI-AEGFWGLIRVAMLSAVGGLVGGMLIIWFPLKRWLGALERVETFD 209 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASM 256 +S + I + E +L+ D ++ AE N AKS FLA+M Sbjct: 210 AAPSCVEGDESELLIENLPTEFRPAFEKLKRTTEHLDGESRAKEVAESANRAKSEFLANM 269 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLN I+G +E+ + + +E++ + S LL ++NEILD S+IEA Sbjct: 270 SHEIRTPLNGIIGMTELALETKLTKV----QREFLQVANDSANTLLLIVNEILDFSKIEA 325 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G + I + + + RA+ K +E+ D + Q+I N+ Sbjct: 326 GMMTIDTVVFDPKRIFEQALGPMIPRAKSKCLELQCTFSEGFPKEFVGDPVRLLQIINNM 385 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 + NA+KFT GG +HV G Q + SI+D G G+ ++ ++ F Q +I Sbjct: 386 VGNAIKFTERGGVYLHVQAGKDLQGIQLLKCSIRDTGIGVPFEKVSSIFKPFEQADSSIT 445 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + ++ G+ + S++ G LP R Sbjct: 446 RNFGGTGLGLTITRRLVELMRGEVWLESQVGVGSTFHFSLPEMR 489 >gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC A4] Length = 2312 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 16/302 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q + E AK E + E+ Sbjct: 1796 IGISLSNALLFREIRKVGATNASMVESQKRALTQARDAEQKAKVAEAEAKHNVKLKEDAA 1855 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G + EY+ I LL LIN Sbjct: 1856 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1911 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + +D V D Sbjct: 1912 DILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLDEVPPDLVVLGD 1971 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V+ T + S+ D G GI + + P + Sbjct: 1972 PVRLHQIFMNLLSNSYKFTPK-GSVTVSAKVTREGKGRVRLECSVSDTGIGIPDEQKPRL 2030 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + + G GLGL I ++I+ GG + S G V L +V + Sbjct: 2031 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSVPGAGTTVTFHLSFNKVKS 2090 Query: 480 FI 481 Sbjct: 2091 ES 2092 >gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ATCC 18188] Length = 2401 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q L E E +++ E + E+ Sbjct: 1832 VGISLANAFLYRNASKVSAANAAMVEAQKRALALAREAERKSKVAEAEAKHNVKLKEDAA 1891 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ ++ + Y+ I LL LIN Sbjct: 1892 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADTLLTLIN 1947 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ ++ ++ + +D + V D Sbjct: 1948 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMGD 2007 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V T I + D G GI+ ++ + Sbjct: 2008 PVRLHQIFMNLLSNSYKFTPK-GSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2066 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++S+ G V L Sbjct: 2067 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2119 >gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264] gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264] Length = 896 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] Length = 828 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 18/280 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ ++NV + Q E + I EL+ ++ + +++AE + KS FLA+ Sbjct: 559 QWNWVRTNVVVNQYQPENGVIELISVNYDITELKETEAKLIDAKEKAETADRLKSAFLAN 618 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLNAI+GFS ++ N E ++Y+ + + + LL LI++ILDLS+IE Sbjct: 619 MSHEIRTPLNAIVGFSSLLVQG----ENPEEREQYMAIVEENNELLLQLISDILDLSKIE 674 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG ++ + + + + + + ++L+A+ +E+ + +D + QVI N Sbjct: 675 AGTFDFVKQELDVNQLCEDMVRTMKLKAR-PGVEVVFDHRLPECIIVSDRNRLNQVIANF 733 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 ++NA+KFT+ G + + G + D G GI + + + F + S Sbjct: 734 MNNAIKFTST-GSIRLGYGQAETNLLRFYVADTGIGIIQEKQAEIFDRFVKL----NSFV 788 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++SI+ GG + S+ +G LP Sbjct: 789 HGTGLGLSISKSIVEQLGGTIGVESESGKGACFWFTLPVA 828 >gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1620 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AEE AKS FLA+MSHE+RTP+NAI+G S + + + ++YI ++RS ++ Sbjct: 732 QAEEATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTEL----TDKQRKYIEKVYRSAEN 787 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N+ILD S+IEAG+ ++ A L D+ M+ L+A+E +E+ + ++ + Sbjct: 788 LLGILNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPT 847 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGE 416 + D + Q+++NL +NAVKFT G V V+ G + S+KD G G++E + Sbjct: 848 LVGDPLRLGQILINLGNNAVKFTPR-GEVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQ 906 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + G GLGL I + + GG + S+ G Sbjct: 907 RKKLFQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFT--ARF 964 Query: 477 VLNFIPEDNHESTQY 491 P S + Sbjct: 965 GKQAAPAAPDRSRDW 979 >gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19] gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19] Length = 793 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE E K AE+ N AKS FLA MSH++RTP+NAI+G + + + Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E + + I+ + + LL+LINE+LD+S+IE+GR LSE ++ +++++ ++M Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + K + + +V D + ++QV++N+LSNA+K+T GR+ + + Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427 Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +DNG G+ + + F + S QG GLG+ I+ I+ G Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S+ +G +P + P+D E Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520 >gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 793 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE E K AE+ N AKS FLA MSH++RTP+NAI+G + + + Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E + + I+ + + LL+LINE+LD+S+IE+GR LSE ++ +++++ ++M Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + K + + +V D + ++QV++N+LSNA+K+T GR+ + + Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427 Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +DNG G+ + + F + S QG GLG+ I+ I+ G Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S+ +G +P + P+D E Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520 >gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 793 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE E K AE+ N AKS FLA MSH++RTP+NAI+G + + + Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E + + I+ + + LL+LINE+LD+S+IE+GR LSE ++ +++++ ++M Sbjct: 311 ---DERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + K + + +V D + ++QV++N+LSNA+K+T GR+ + + Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427 Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +DNG G+ + + F + S QG GLG+ I+ I+ G Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S+ +G +P + P+D E Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520 >gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. mori str. 301020] Length = 905 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 122 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 181 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 182 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 241 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 242 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 298 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 299 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 354 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 355 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 414 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 415 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 474 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 475 QMGGEIGVDSTPGEGSEFWISLKLPKAR 502 >gi|87306646|ref|ZP_01088793.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290825|gb|EAQ82712.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 704 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 6/297 (2%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + ++ + L+ + +++ ++ + AELEV +E+R Sbjct: 235 LRPLLTTVAQLIVAMKNERSRLATEERLWDTLDELVEQRSRVQEYAAELEVKNHELEESR 294 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RAE NLAKS FLA+MSHE+RTP+ A+LGF++V+ + ++ + I I R+G Sbjct: 295 RRAEASNLAKSEFLANMSHEIRTPMTAMLGFADVLLEDGDIQKAPKSRIDVIRTIQRNGI 354 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+ILD+S+IEAG+ + + I++E + ++Q+RA++ +E+ + + Sbjct: 355 HLLGLINDILDVSKIEAGKLAVEQVQCRPAAIIKEVLSLMQVRAEQSQVELKLRYETETP 414 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEG 415 + +D +RQ+++NL+ NA+KFT G V + V + + D G G+ Sbjct: 415 QEILSDPTRLRQILMNLIGNAIKFTEE-GSVTLAVRFIESPEWPMLEFDVIDTGIGMTLE 473 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAI 471 + F Q ++ G GLGL I+ + GG ++S G Sbjct: 474 HQQNLFQPFSQADSSMSRRFGGSGLGLAISLRLAGLLGGDVSLVQSTPGTGSTFRFR 530 >gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 576 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 8/280 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ T+ ++ + + + S + LL +I++ILDLS+IE+G ++L+E Sbjct: 231 NSVLGMLDILRQSTL----SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 I L D V I + A KN+ S W D + Q++ NL+ NA+KFT Sbjct: 287 WIHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V+V +SI D G GI+ + + T+F QG +I G GLGL Sbjct: 347 DS-GSVSVSVA-EENDEVVVSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482 I + ++ G+ ++S+ EG + +P TR P Sbjct: 405 ITKHLVEMMRGEISVKSRENEGSDFTIRIPVLTRYNQSRP 444 >gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568] gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 906 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 159/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL+ + I+ L + L V P+ ++T + LD + G + L Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + M T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTEMSV----TQTDYLQTIERSANNLLTIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L +L + + E I++L A EK +E+ + + V D Sbjct: 346 DVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G + V + R + ++ D G GI+E + + Sbjct: 406 LRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDRQMELEVQIHDTGIGISERQQSQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+L G + Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515 >gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB] gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB] Length = 955 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 133/273 (48%), Gaps = 9/273 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 ++ + + + L + ++ AE N+AKS FLA+MSHE+RT Sbjct: 534 VSRDISEQVRNEEELAQHRLHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRT 593 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI G + +I + P E + + + +HLL IN ILDLS+IEAG++ L Sbjct: 594 PLNAISGMAHLIRRGGLAP----EQMERLDRLELASEHLLETINAILDLSKIEAGKFSLE 649 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 E+ + + I+ +LQ RAQ K++++ + DP+L + D ++Q +LN +SNA+KF Sbjct: 650 EAPLRVAGILDNVTAILQDRAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAIKF 709 Query: 383 TAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T GR+ + ++D G GIA +P + ++F Q +I G Sbjct: 710 T-ESGRITLRARRVDEDADSLLLRFEVEDTGIGIAPEHLPRLFSAFEQADNSITRRYGGT 768 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I + I GG S L +G Sbjct: 769 GLGLAITRKIARLVGGDAGASSVLGQGSTFWLT 801 >gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 683 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 20/241 (8%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLASMSHE+RTP++AILG +E++ + P + Y+ +G++LLN+I Sbjct: 150 NRAKSDFLASMSHEIRTPMHAILGMAELLLETPLSP----EQQRYVEIFRNAGENLLNII 205 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD+S++EAG EL L +I+ + L +RA K +E+ I P + + D Sbjct: 206 NDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGD 265 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----------TSGRGQY---ISIKDNGP 410 ++Q+++NL+ NA+KFT G V V V T G+ SI D G Sbjct: 266 PVRLQQILINLVGNAIKFTEK-GEVVVHVEKSTELTGGPETGTEEGGKVELLFSIADTGI 324 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + +I + F Q + G GLGL I++ ++ GG + S++ +G Sbjct: 325 GIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGTTATF 384 Query: 471 I 471 Sbjct: 385 T 385 >gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 582 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F+A++SHEL+TP+ +I GF+E + M + + ++ I + + Sbjct: 350 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESER 407 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ E+LDLS+IE ++L + + ++ E + + +A EK I++ + L Sbjct: 408 LQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLV- 466 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D M+Q++LNLL+NA+ +T GRV V + I +KD G GI E EIP + Sbjct: 467 IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAE-EREKEVLIHVKDTGIGIEEKEIPRI 525 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G + SK+ G P Sbjct: 526 FERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM 17244] gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM 17244] Length = 591 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 97/428 (22%), Positives = 180/428 (42%), Gaps = 30/428 (7%) Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 +W L +A + L ++ + + L + IG + + Sbjct: 53 ILWGGTFLLSLSAVIFLILILVIKRNSSFKNISFIYKLFWSILVIG----VFPFLYR-DA 107 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + + + + + L L F+ ++V + L + Sbjct: 108 SMSLIPLNCVVLAGVLICAPILKKNDLR---FIYLVSIIVNVCACLYAKDIPFYYYLQVV 164 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEK----DDLIAELEVAKSLSDETRKRAEEENLA 248 + ++ + +L +++ Q + + I E E K+ +E + N A Sbjct: 165 IINITAYL--LANNLHGKYMELFDKQRQAYKAYMNSILEQESLKAKLNEEK----SANSA 218 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FL+ MSH+LRTPLN I+G S + + + E +Y+ I++SG++LL+LIN++ Sbjct: 219 KSEFLSRMSHDLRTPLNGIIGSSYLALNDD---IPREEVNDYLNKINQSGKYLLSLINDV 275 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKG 367 LD+S+IE+ + EL +L + + +++ + E +I+ + V D Sbjct: 276 LDMSKIESDKMELHPEPYTLSEFLDTVNSIIKEQCSENDIDFDIVCKEVDIKCVMLDRLR 335 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTS 423 Q+ LNLLSN+VKFT GG++ + + S + ++D G G+++ + Sbjct: 336 FNQIFLNLLSNSVKFTPKGGKIDLIIEHLSKDDDKIKKRFIVRDTGIGMSKEFLAHAFEP 395 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q S +G GLGL I I+ G+ I S+ +G V L V + E Sbjct: 396 FTQEKAGDTS--EGTGLGLSIVYKIVELMNGRIYIESEPGKGTSVTVELEVDIVKD--ME 451 Query: 484 DNHESTQY 491 D E T++ Sbjct: 452 DKEEKTEF 459 >gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200] Length = 1770 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL++ ++ A+ + AK FLA+MSHE+RTP+NAI+G S++ + + Sbjct: 1016 MTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----D 1071 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K Y+ I R+ Q LL++IN+ILD S+IEAG+ ++ L ++ + M + Sbjct: 1072 KKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVV 1131 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K +E+ + P++ ++ D + QV++NL++NA+KFT G V +++ + Sbjct: 1132 HKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTER-GEVLLSINLVEQQNDDV 1190 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D+G G+ + + + SF Q + G GLGL I + ++ GG + Sbjct: 1191 TLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVE 1250 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 1251 SQFGHGSTFYFT 1262 >gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1269 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 142/256 (55%), Gaps = 10/256 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A + +RA N AKS FLA+MSHE+RTP+NA+LG +EVI E +E E Sbjct: 637 RATETARMEERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILREC----KDEKILE 692 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y +I +G+ LL+LIN+ILD S+IEAG E++E+ ++ + M+ ++A++K ++ Sbjct: 693 YAQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILD 752 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS---- 404 + ID L +++ DE +RQ+I+N+L+NAVK+T GG V + G I+ Sbjct: 753 LKFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGG-VTLEATGIRDYGDTITLKIK 811 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI + E+PT+ F + +G GLGL I S++ GG ++ S + Sbjct: 812 ITDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGK 871 Query: 465 GVEVIAILPNTRVLNF 480 G +LP + + Sbjct: 872 GSTFTIVLPQKVIGDS 887 >gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 917 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 858 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 157/387 (40%), Gaps = 20/387 (5%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 W++ G W ++ K + L + +L Y + Sbjct: 345 RWVVAYSRLQGPGW--FSVSLVDRNIQRRSIAGKLSIALGLGILGVALQAVLAYFILYRR 402 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 F + T + L L + + + +A D Sbjct: 403 FVRPLEALTGHFGVARPRAAATNPALQPLLGS----RHEIGMLARTLEEQRATNKDAFDL 458 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 LE + + E N AKS FLA++SHE+RTPLN ILG ++V+ + ++ Sbjct: 459 LEARVAERT---RELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTSR----SKQR 511 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++ I SG+ L L+N++LD+S+IEAG+ ELS + + + + Q A+ K+ Sbjct: 512 QDQARMIEESGETLTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKS 571 Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQY 402 ++ +IDPSL + D +RQ + NLLSNA+KFT+ G V ++ W Sbjct: 572 LDFSVEIDPSLPERLEFDPLRVRQCLSNLLSNAIKFTSK-GSVQLSARWHRETDQAGLLE 630 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GI ++ T+ + F Q AI G GLGL IA+ + GG + Sbjct: 631 IKVCDTGIGIPPEKLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDITAEATP 690 Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489 +G + P E T Sbjct: 691 GQGSTFTLTF-TAKPAQTRPAAPEERT 716 >gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 713 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 94/307 (30%), Positives = 157/307 (51%), Gaps = 6/307 (1%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P + +++ +I L + FT + ++ S E L Sbjct: 405 PPLRGWLAAPLVARDGRNIGLIQLSDKCEEEFTAEDEAIVVQLAQMASVAIENARLFEAE 464 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A++L+++ R+ AE N AK FLA +SHELRTPLN I+GF++++ ++ L+ Y+ Sbjct: 465 QTARALAEQARREAEAANRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSG--LSAADYR 522 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I R+G+ LI+++LD+SRI +G+ + A+ L+ +V I ++ A+ K I Sbjct: 523 -ALETIERNGRLQAQLIDDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGI 581 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + ++D ++V AD M+QV+ NLL+NA+KFT GGRV + + R I + D+ Sbjct: 582 CLSGRLDDGATAV-ADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCR-GDRTLLIRVSDS 639 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467 G GI+ +P V F Q G+GLGL I + I+ HGG +S + +G Sbjct: 640 GIGISPDFLPYVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTT 699 Query: 468 VIAILPN 474 LP Sbjct: 700 FCVELPL 706 >gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 995 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 8/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + + + + ++ AE+ N+AKS FL+ MSHELRTPLN ILGF++++E M Sbjct: 243 EDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDES 299 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE +++ +I G HLL+LIN+ILD+SRIE G ++S + L+ +++ECI ++Q Sbjct: 300 LNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPL 359 Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++KNI I+ ++D V AD ++Q++LNLL NA+K+ G+V V Q Sbjct: 360 AKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFC-RLQENKQ 418 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 YI I D G G + E V F + + E+G G+GL + + ++ GG+ + S Sbjct: 419 YIHIVDTGVGFSVEEYTKVFVPFYRIE---STKEEGTGIGLSLVKQLVHLMGGEINVTSN 475 Query: 462 LREGVEVIAILPN 474 G E LP Sbjct: 476 KGTGSEFCFSLPL 488 >gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15] gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15] Length = 896 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|254443602|ref|ZP_05057078.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257910|gb|EDY82218.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1279 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 171/359 (47%), Gaps = 14/359 (3%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L + ++ + AV + F +++A+ + ++ L +++ T Sbjct: 791 LSLTIAAPFWQTWPFRAAVVSALFLLLLAIYLTLYIRGKLMRRRLERVVSERTRELTEAN 850 Query: 205 YHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 L +I + D+L + + +K AEE + KS FLA+MSHE+ Sbjct: 851 LQLTTQKSEIEQSRKIISRSHDELEELVGERTRELERAKKHAEESDQLKSAFLANMSHEI 910 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+GFS +I +++ +++ I+ + L LI++ILDLS IEAG+ + Sbjct: 911 RTPMNAIMGFSSMI---VTDKFSDDERRDFTKIIYNNCTSLATLIDDILDLSAIEAGQIK 967 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKN---IEIFQKIDPSL--SSVWADEKGMRQVILNL 375 +++ A +L ++ E L+ EK+ ++ P L + V +D +RQ++ NL Sbjct: 968 IAKRAFNLDGLLDELSDSFALQVSEKDPTRFKLLFTRPPELQSAIVVSDPLRLRQILSNL 1027 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 +SNA+KFT G V+V + R +I+D G GI++ + + F + + Sbjct: 1028 ISNAIKFTQE-GHVYVRYEFEKHRPHVRFTIEDTGIGISQKHLDAIWQRFRKIEDDTNTL 1086 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G GLGLPI ++++ GG+ + S+ +G +P L + + H+ K Sbjct: 1087 FRGTGLGLPITKNLIELLGGEISVESEEGKGSRFTFSIPRGSNLRAVDKPTHQDNPQKS 1145 >gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385] gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385] Length = 1020 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 401 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 460 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 461 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 520 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ + Sbjct: 521 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIDQ 576 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 577 AHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 636 Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G+G +++D+G GIAE E T+ +F Q G GLG Sbjct: 637 TEQ-GEVRIRIRLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 694 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 695 LAISRKLVKAMGGELQLASQLGQGSCFWFTLPL 727 >gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1035 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 141/305 (46%), Gaps = 42/305 (13%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I+++ + L + R+ AEE + AKS FLA+MSHE+RTP+NAI+G + ++ + Sbjct: 468 EDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPL--- 524 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N +E++ I SG LL +IN+ILD S+IE+G+ EL +L V E + +L R Sbjct: 525 -NPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASR 583 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A E+ +E+ ID + V D +RQV++NL+ NA+KFT G V + V Sbjct: 584 AAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQK-GNVTLYVKAKPMPMS 642 Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +I+D G GI+ + + F Q + G GLGL I Q ++ Sbjct: 643 QYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVE 702 Query: 451 NHGGQFLIRSK-------LRE--------------GVEVIAILPNTRVLNFIPEDNHEST 489 GGQ + SK + G +LN P E T Sbjct: 703 RMGGQIWVESKKTGESLVVGGTPLAVYESIPIAESGSVFYFT--ARFLLNPNP--APEPT 758 Query: 490 QYKCY 494 CY Sbjct: 759 DDTCY 763 >gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451] gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451] Length = 701 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ + Sbjct: 291 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 350 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + ++++ ++ SG+H++ L+NEILD S+IE G++EL S L I+ Sbjct: 351 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 406 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + EK ++ D + D+ +RQ+I NLLSNAVKFT G V V + Sbjct: 407 IYSSLCFEKGLQFQLHSDIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 465 Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + +Y I ++D+G GI + + + F Q G GLGL I + I Sbjct: 466 NIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 525 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ++S++ +G + ++ ++ + K Y Sbjct: 526 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 564 >gi|269968417|ref|ZP_06182433.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269826965|gb|EEZ81283.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 573 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 24/305 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV + + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG ++++ T+ +E + + + S + LL +I++ILDLS+IE+GR++L+E Sbjct: 231 NSVLGMLDILKQSTL----SEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 I+L D V I + A++KN++ + W D + Q++ NL+ NA+KFT Sbjct: 287 WINLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDKQFWIDSTRLSQILFNLIGNAIKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V+V ISI D G GI++ + + T+F QG +I G GLGL Sbjct: 347 DE-GEVKVSVS-EQDAELVISISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-----------------NTRVLNFIPEDNH 486 I + ++ G+ ++S G +P T+ + + ++ Sbjct: 405 ITKHLVEMMRGKIAVKSDEHVGSTFTISIPVLTRCNQNRPVRIETNQPTKAMELLVVEDT 464 Query: 487 ESTQY 491 ES Q+ Sbjct: 465 ESNQF 469 >gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2483 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 38/400 (9%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ + T I + ++ + M + L Sbjct: 1634 LNIIVLPVLFEGEVKAIIELASFHPFSAIHQIFLDQLTESIGVVLNMIIANMRTEQLLLQ 1693 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L +Q+ L L +++ + ++ Sbjct: 1694 SQGLTQELQSQSRE------------LTQQQEELKRTNTELEAQALELEEKAKQLEEQNT 1741 Query: 227 ELEVAKSLSDETR----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 +E + + R ++AE+ + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1742 RVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKD 1801 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ + EY I+ SG LL+LINEILDLS++EAG+ ++ I L ++ + Sbjct: 1802 GNLSGKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSF 1860 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A++KN+ ++ + + D + ++QV+ NLLSNA KFT GG V + V Sbjct: 1861 RPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADK 1919 Query: 399 RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 ++ + D G GIA+ + + +F Q + G GLGL I+ Sbjct: 1920 GVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSIS 1979 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + I GG+ + S L +G LP V PED Sbjct: 1980 REIAKLLGGEIHVESTLGKGSTFTLFLPPEYV---APEDE 2016 >gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 774 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 158/356 (44%), Gaps = 29/356 (8%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 ++ + L +++ A +L P+ + + ++ G + Sbjct: 155 ILFTACMLCTIIALDAFFQRIL-------ISPLRMLANNTRKIARRKFVTVDVGSRMDEI 207 Query: 198 SFFTYITYHLFKSNVKILS-CQAEKDDLIAELEVAKSLSDET--RKRA---EEE--NLAK 249 H+ ++ + + + ELE A L + + A E AK Sbjct: 208 GILALNFNHMSRNLESLYKNLEVNVQERTHELESANQLLVKAIAKSEAMAVEAAKGTRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHE+RTP+NAILG +E++ + ++ + ++ + SG+ LL+LINEIL Sbjct: 268 SQFLAAMSHEIRTPMNAILGMAEILADSHL----DDEQRRFVEILQESGESLLHLINEIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IEAG + ++L I+ + + K +E+ I+ + + D + Sbjct: 324 DLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNINRDVPVQLMGDPSRL 383 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTV 420 +Q+ +NL+ NA+KFT G V V + ++KD+G GI + ++ ++ Sbjct: 384 QQIFVNLIGNAIKFTER-GFVVVETSLVQPDMADNGGSLKIHFAVKDSGIGIEDDKLDSI 442 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q + G GLGL I +S+ GG+ + S+ G V LP + Sbjct: 443 FDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGTTVHMELPFEK 498 >gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33] gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33] gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9] gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33] gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9] gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33] gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] Length = 984 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +V E ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 996 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 99/433 (22%), Positives = 157/433 (36%), Gaps = 31/433 (7%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 ++ T + + + + + + Sbjct: 338 AIATGLAIILLWTFVLLFNRKILVPLFERS--ERVFDSEHLSRTLIETVPVGLALVNADN 395 Query: 136 YLTIYKSATL-----LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 + + +SA + +A + L ML +F +T + + +H+ Sbjct: 396 HTVLLESAHMQALEKRVAAAGDVLIGGMLKQHAPAAFRASRGDAATTSDVELHLPS---- 451 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 I L S + + R A+ N AKS Sbjct: 452 -----GEGSTIDIAAKLTPSFYEGQPVIVAALSDVTAERQLARELTAARHAADSANAAKS 506 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLASMSHE+RTPLNAILG E++E + + S + LL ++N+ILD Sbjct: 507 AFLASMSHEIRTPLNAILGHLELLERLPQAAPVVARVR----TVASSSRALLQILNDILD 562 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 S++EAG D+VR+ M AQ K + + ID +L + D +R Sbjct: 563 FSKVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHTIDAALPRYYLGDPGRIR 622 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQ 426 Q+++NLLSNA+KFT G V + V G I + D G GI V +F Q Sbjct: 623 QMVVNLLSNAIKFTDR-GSVSIEVSAGKGNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQ 681 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP---- 482 +I G GLGL + + I GG + S+ +G LP + P Sbjct: 682 IDASITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTVTLPLRHGDDTAPAHEG 741 Query: 483 --EDNHESTQYKC 493 + E+T + Sbjct: 742 DSQTADEATDTRG 754 >gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 842 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 11/292 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + E +L + ++ AE+ + AK+ FLA+MSHE+RTP+N Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S+++ + + ++ + I S LL +IN+ILDLSR+EAG+ E+S Sbjct: 480 IIGMSDILAESPL----SAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 +L V + +L+ + +EK + Q L V D+ +RQ+++NLLSNAVKFT Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFT-Q 594 Query: 386 GGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V + V +I + D G GI+E + V F Q A G GLGL Sbjct: 595 YGSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLT 654 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPED-NHESTQYK 492 I+ + GG + S +G L R P + E+ Q K Sbjct: 655 ISNILAQRMGGGISLNSNEGQGSCFRLEIRLSAARTAPSAPTQISPETAQQK 706 >gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] Length = 971 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 155/325 (47%), Gaps = 12/325 (3%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLATALSFFTYITYHLFKSNVK 213 +++ Y + F + + +++ + + ++ A Y + H K + Sbjct: 311 IDYLYRYFMLALLFTACIVMVLSIVLTKRITVPLAKLARFAAQFKLGNYTSQHTLKGPHE 370 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 Q + ++ ++ ++AE + AKS FLA++SHE+RTP+N +LG S++ Sbjct: 371 FQVLQEALNQGATKIAYDTQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQL 430 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + + ++ + SG+H+++++N+ILD S+IE G+++L+++ + D+V Sbjct: 431 LLKTDL----TQEQRHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVG 486 Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 A+EK ++ + S S +AD+ +RQ++ N+++NA+KFT G V V+ Sbjct: 487 TIESTYYSLAKEKGLDFSIQCHFDSNSWFFADKSRIRQILFNVINNAIKFTDK-GEVRVS 545 Query: 393 VGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + R I+ +D G GIAE + + F Q I+ G GLGL I + Sbjct: 546 LNQGQCDNPKERKLIITAQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQ 605 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + G + S +G L Sbjct: 606 LANLMNGDIQLESAYGKGSTFTITL 630 >gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52] gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395] gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27] gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52] gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395] gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27] Length = 984 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +V E ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TDQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691 >gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 818 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 147/258 (56%), Gaps = 13/258 (5%) Query: 225 IAELEVAKSLSDETRK----RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 I + A+ +E + +A + NLAKS FLA+MSHE+RTP+ A+LG+++V+ +G Sbjct: 393 IVQDITARKEMEEALRDSEQQASQANLAKSEFLANMSHEIRTPMAAVLGYADVL----LG 448 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L + + + + R+G+HLL LIN+ILDLSRIEAG+ E+ + SL ++V + ++Q Sbjct: 449 HLKDPDNRNCVMIMKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTLMQ 508 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +RA EKN+ + K + + D +RQ+++NL+ NA+KFT G V + + Sbjct: 509 VRADEKNLMLNVKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQ-GEVRLVIRLLPDS 567 Query: 400 G---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++D G G++ +I + F QG ++ A G GLGL I++ ++ GQ Sbjct: 568 DKPIIEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTRAYGGSGLGLAISKRLVQMLKGQL 627 Query: 457 LIRSKLREGVEVIAILPN 474 ++S++ +G LP Sbjct: 628 KVKSEVGQGSIFRIRLPA 645 >gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 1143 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 159/379 (41%), Gaps = 5/379 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R ++V A +L L P L + + + I +++ + Sbjct: 331 RHLVIVPAKADAQVNAVLELGFFKPVDPLVLDLLERVSPAIGIALRSARFRARLQDALEE 390 Query: 167 FFPVVVALSTQA--IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q+ + + L + L ++N ++ + Sbjct: 391 TQRQAGELQAQSEELRVSNEELEEQGRALRESQVRLEQQQVELEQTNSQLEEQAQTLETQ 450 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ELE A + E+ + KS FLA+MSHELRTPLN++L S+++ + G L++ Sbjct: 451 RDELERAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSD 510 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I SG LL LIN+ILDLS+IEAG E+ ++L + + A+ Sbjct: 511 EQIK-YANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAE 569 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + + + +D + Q++ NLLSNA KFT G+V + + Sbjct: 570 KKGLGFDISLSDDCARTIESDRMRLEQILKNLLSNAFKFTER-GQVSLAIERVDDAFIRF 628 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GI+ + ++ +F Q I G GLGL I++ + GG+ + S+ Sbjct: 629 AVSDTGIGISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPG 688 Query: 464 EGVEVIAILPNTRVLNFIP 482 EG +P P Sbjct: 689 EGSTFTLTIPLAYDAVAQP 707 >gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 557 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 11/265 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + I ++ + E +++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 152 MTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVG 211 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ E ++Y+ +H + + LL L+N+ILDLS+IEAG E S + + Sbjct: 212 FSELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN 267 Query: 330 DIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + + +++ ++I + V D + QV+ N +SNA+KFT G Sbjct: 268 LLLNDLEQLFRMKIGSNSPVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTE-GS 326 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + +S G + D G GI+ ++ V F + G GLGL I ++I Sbjct: 327 IRIGY-QSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTI 381 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 + GG+ S++ +G LP Sbjct: 382 VNKLGGEIGAESEVGKGSTFWFTLP 406 >gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 714 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 150/319 (47%), Gaps = 16/319 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLF---KSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + L L ++S + ++N L E + + +L+ AK+++ E + Sbjct: 259 FILLLFAGLFYSISRLSLADQRAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVATEALQT 318 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE N AK+ FL++MSH++RTP+NAI+G + +I N EY I S QHL Sbjct: 319 AENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKIDISSQHL 375 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSS 360 L +IN++LD+S+IEAG+ S S++D ++E + + EK + Sbjct: 376 LGIINDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQQTFTIIKENIQHEW 435 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNGPGIAEG 415 V D+ + Q+ NLLSNAVK+T GG + V + + DNG G++ Sbjct: 436 VNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFLVSDNGMGMSAD 495 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 T+ +F + ++ + QG GLG+ I ++++ GG + S+L +G +L Sbjct: 496 FKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQGSCFEVLLDLK 555 Query: 476 ----RVLNFIPEDNHESTQ 490 R + ++ + Sbjct: 556 IAEDRTVALAAQEETDEQD 574 >gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 607 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 97/253 (38%), Positives = 146/253 (57%), Gaps = 1/253 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E ++ + DE R A+ + AKSRFLA+MSHELRTPLNAI+GFS++I E L Sbjct: 327 RDITERKLHEQALDEARAEADRADDAKSRFLATMSHELRTPLNAIIGFSDMIVQEDELRL 386 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E KEY I+ SGQHLL+++N ILD+S++E+G +E+ + + C +L L+ Sbjct: 387 GAERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALK 446 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A++ I++ + +L V D + +Q++LNL+SNAVKFT GG V V+ Sbjct: 447 ARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLVSNAVKFTERGGTVTVSAA-VESTRLV 505 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIAE ++ + F Q + +G GLGL I +S++ HGG+ +RS++ Sbjct: 506 LCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRSQI 565 Query: 463 REGVEVIAILPNT 475 G V LP Sbjct: 566 DCGTTVTVSLPLA 578 >gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1067 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 8/289 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + A I + + + + E +RAE N AKS FLA+MSH Sbjct: 359 WVLASGRVIDRDAEGRAIRIAGVHKEITDRKQVEDMLKEAVERAEAANRAKSEFLATMSH 418 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N I+G + ++ + + + S + LL++IN+ILD S++EAGR Sbjct: 419 EIRTPMNGIIGMTGLLLDTQLTR----EQMHFANTVRTSAEALLSIINDILDFSKMEAGR 474 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377 E + ++ + +L R + +N+E+ + PS V + D +RQV+LNL Sbjct: 475 LEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSARGVFYGDAGRLRQVLLNLAG 534 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT IG + + I + D G GI++ + T F Q + Sbjct: 535 NAIKFTEIGSVHIGIRAETEFDDMVRLRIEVVDTGIGISDNAKSRLFTMFTQADSSTARR 594 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL I++ I+ GG+ S +G + R + Sbjct: 595 FGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWFQVSLRRSDEQTSD 643 >gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 2250] gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 917 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] Length = 819 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 144/293 (49%), Gaps = 18/293 (6%) Query: 203 ITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + ++K++ + E D+ I + + R RAE N AKS FLA+M Sbjct: 160 VVRLWNGFSIKLVERRGEDGDIVSLCLNITDTIKREQELTLARTRAEAANRAKSAFLANM 219 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTP+N ++ SE++ + +E Y+ I +SG+ LL +IN++LD S++EA Sbjct: 220 SHELRTPMNGVVAMSELLNESAL----DEEQALYVETIRKSGEALLVIINDVLDYSKMEA 275 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 + +L + L ++ + +++ + AQEK++++ D L D+ +RQV+ NL Sbjct: 276 EKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNL 335 Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 L NAVKFT G V + V + +SI+D G GIA I + F Q Sbjct: 336 LGNAVKFTLE-GHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDER 394 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482 A +G GLGL I + ++ GG+ + S++ EG LP P Sbjct: 395 NRAFEGTGLGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRIALPLDAADGEPP 447 >gi|87307352|ref|ZP_01089497.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290092|gb|EAQ81981.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 830 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 12/334 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + ++ L +L A+ L+ + ++ + + +S A F + Sbjct: 316 LMAPLTRLRWNILGVALLLASIALGISWLVGNRLRTRIARLSHAAKRIGDGEFGLQVDDE 375 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++ I + + RAE NLAKSRFLA+MSHELRTP+ A Sbjct: 376 SHDELNDVVRQFNAMSWKIV---QSHDELLAAQHRAESANLAKSRFLATMSHELRTPMTA 432 Query: 267 ILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ILGF+E ++E G L E E + I R+G+HLL LI+++LDLS+IEAGR E+ Sbjct: 433 ILGFTENLLESPDYGSL--EERNETLNTILRNGEHLLGLIDDVLDLSKIEAGRTEIQTEL 490 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 S I E I +L+ RA + + + + + + D +RQ++LNL+ NA+KFT Sbjct: 491 CSPGQIANEVIGILKKRAASRRLTLRIRCKTPIPAEIETDALRLRQILLNLVGNALKFTE 550 Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG + + + T G + ++D GPGI ++ + F Q + G GL Sbjct: 551 KGG-ISLELSSTFGDVGRRMLRVRVEDTGPGIPSDQLEHIFEPFVQVDSTTSRSFGGAGL 609 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLPI++ + GG ++ S + G +P Sbjct: 610 GLPISRRLAELLGGTLIVESTIGTGSAFTLSVPV 643 >gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 1000 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 3/270 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L N ++ + + E + +EL + + + E + K+ FL++MSHELRTP Sbjct: 441 SKTLEFQNRELEAQKTEMEAQSSELAEQNRELEMQKIQLHEASRLKTNFLSNMSHELRTP 500 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+++ S V+ + + Y+ I R+G+HLL+LIN+ILD+SRIE+GR E+ Sbjct: 501 LNSVIALSGVLSRRLNEKIPADEL-SYLEVIERNGKHLLSLINDILDISRIESGREEVDV 559 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S + ++V + + +++ +AQ+KNI++ + + +D R ++ NL+ NAVKFT Sbjct: 560 SKFIVEELVTDIVSIIKPQAQQKNIDLIKATISKDIVITSDIDKCRHILQNLVGNAVKFT 619 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V + V T IS+ D G GIAE I + F Q G GLGL Sbjct: 620 EK-GSVSIDVVKTQ-NAIEISVTDTGIGIAESNIDHIFDEFRQADGGTSRKFGGTGLGLA 677 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 IA+ GG ++S L EG LP Sbjct: 678 IAKKYANLLGGTVTVKSILGEGSTFTLSLP 707 >gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 931 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 22/307 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + +++L A EK +E+ I + Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + + +D G GIAE + Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDTGIGIAELQQS 462 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNP 522 Query: 477 -VLNFIP 482 + P Sbjct: 523 HAMPTEP 529 >gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] Length = 916 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 28/355 (7%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201 ++ + ++ ++ F + L+ ++ + L M Sbjct: 388 VIAVVELATMTKFNALQQELVKQVTETFGLTVNGVLGRMEIVRLLNESRAMTEELQVQSE 447 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251 + + ++ + L + A+ ++ ++ EE KS Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAESKSRELEKAKQELEESAEQLILNSNYKSE 507 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLN+IL SE++ + L +E E+ IH SG+ LL LIN+ILDL Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENSQDHLTDEET-EFAKVIHSSGEDLLALINDILDL 566 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370 S++EAG+ ++ + +++ ++ + A +KNI+ + V + DEK +Q Sbjct: 567 SKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNIDFHISKADHVVDVFYTDEKRFQQ 626 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIP 418 +I NLLSNA KFT G V + + + I++ D G GI + + Sbjct: 627 IIKNLLSNAFKFT-EHGSVTLAINQLAQSQLTSNMQDISDDWLEITVSDTGIGIPKDKHQ 685 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q A G GLGL I + GG ++S+ +G +P Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSEEGQGSSFTLTIP 740 >gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 909 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 157/378 (41%), Gaps = 13/378 (3%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W + I I + + T ++A ++ ++ + Sbjct: 126 WTHVTTIVPIRIRSDVIGSVAMTASLEKVWRDALSDFMTFIVASLVAFALALLIAQRMQH 185 Query: 166 SFFPVVVALSTQA---IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 S + AL++ A S + + L + + +D Sbjct: 186 SLLKALGALTSTANRVAESKDFTERASKYSNDEIGQLADAFNTMLIEIADRDHELTEYRD 245 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +++ + AE+ N AKS FLA+MSHE+RTP+N I+G ++++ ++ Sbjct: 246 HLEDVVQLRTQELRLAKDNAEQANRAKSAFLANMSHEIRTPMNGIIGVADLLAAGSLNAH 305 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + S LL L+N+ILD SRIEAG +L + S+ + + + I + Sbjct: 306 ----QQNQLTTLRSSADTLLYLLNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPT 361 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A++++++++ I+PSL + D + QVI NLL+NA+KFT G V ++ Sbjct: 362 ARKRHLDLWFDIEPSLPDYIVGDRYRLGQVITNLLNNALKFT-ESGSVRISCRSQQDKNG 420 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I I D G GI + + + F Q ++ G GLGL I ++A G+ Sbjct: 421 QNRLLIEITDTGIGIIAQALADIFSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEIT 480 Query: 458 IRSKLREGVEVIAILPNT 475 +S G LP Sbjct: 481 AKSTPGRGSTFSIDLPLE 498 >gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88] Length = 1308 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 690 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 749 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + ++ V Sbjct: 750 LTLDTD---DLKPYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTV 806 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D ++ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 807 FNALKTLAVKANEKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFT-EHGEVKL 865 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + S+ D G GI E ++ + +F Q + G GLGL I Sbjct: 866 TICKSDREQCAADEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSI 925 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G Sbjct: 926 SKRLVNLMGGDVWVTSEYGHGSTFHFT 952 >gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] Length = 964 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 19/372 (5%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G + + A + + + L + + ++ + Sbjct: 332 GSGLAITAGQITLVALAAISLLVTFAVVYFYVQGNLLKRLSRLHEGMATLASGNLSSTIN 391 Query: 178 AIMSMHVLDIS-LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA---------- 226 S + ++ + + K N ++ Q E + L+ Sbjct: 392 DYGSDELHTMAKTLEVFRQTAVVRGQLEEQQVKVNQELQRYQNELEQLVEDRTEKLLEVN 451 Query: 227 -ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +LE ++ RK+AEE N AKS FLA+MSHE+RTP+N ILG + +++ + N Sbjct: 452 QQLEEEAVRLEKARKQAEEANRAKSTFLATMSHEIRTPMNGILGTTSLLKDTQL----NT 507 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I SG LL ++N+ILD S+IEAG+ + S+ I+ I + AQE Sbjct: 508 EQQRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQE 567 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 K++ + + ++ D + QV+ NLLSNA+KFT +GG + + V S + Sbjct: 568 KDLSLTYHVADNVPDGSLGDPARLYQVLSNLLSNAIKFTEVGG-IQLQVTANSTQSELIF 626 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D+G GI + +I ++ +F Q + G GLGL I ++ G + S+L Sbjct: 627 SVIDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESELH 686 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 687 KGSTFTFTLPME 698 >gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 977 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 10/280 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + +S + + I E + ++ + A E KSRFLA+MS Sbjct: 293 VRWIHARSVVIRSETGEVIGHVGTVEDITERKYVEAQLSKACDAALESARLKSRFLANMS 352 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N ++G + ++ ++ +++ I S + LL +IN+ILD S+IEAG Sbjct: 353 HEIRTPMNGVIGMTNLLLDTSLNN----EQRDFAETIRASAEGLLTVINDILDFSKIEAG 408 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 + + +L D+V + +L +A K IE+ I+P++ + D +RQV+ NL+ Sbjct: 409 KMTFEDLDFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLV 468 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 SNA+KFT G V + +G + + D G GI+ + +F Q + Sbjct: 469 SNAIKFTQT-GEVTIRTSCLDDQGSQCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTT 527 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + ++ G + S +G L Sbjct: 528 RRFGGTGLGLAICKQLVEKMHGCIGLESTPGKGSIFWFTL 567 >gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 947 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 10/288 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + I+E + + + R A + AK+ FLA+MSHE+RTPLN Sbjct: 529 LRAAEINGRQRLLAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNG 588 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S+++ ++ E Y+ + S ++LL LIN+ILD+SRIEAG + ++A Sbjct: 589 IMGLSQLLRTTSL----TEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAF 644 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 S ++RE M + A EK I + L + + D +RQV++NL+ NA+KFT+ Sbjct: 645 SPAKLLREVAGMYEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSH 704 Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GG V + V + D+G G++ + + F Q + G GLG Sbjct: 705 GG-VTLRVDCLEESATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLG 763 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 L I + + GG S L +G I LP R L + E+ Sbjct: 764 LAICRRLSELMGGSIRAESSLGQGSRFIVELPFGRYLGTQDTEETETA 811 >gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 473 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 18/383 (4%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R G + G + + E L + + I + + ++ Sbjct: 96 RRRFWEGAVISGEDVAAVLAGKTICREGELPLFQGVRLLWVGVPIRSGNAVTGGVFIYAP 155 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA----EKD 222 P+ + + + L A +L + + L + A + Sbjct: 156 LAPLEARVRGLEVTLVAALLGGAALAGLLSLFVARHFSQRLVAMEKVAEAMAAGDYAARA 215 Query: 223 DLIAELEVA-------KSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + EVA K ++ ++ AE + A+ F+A++SHELRTPL+ I G++E Sbjct: 216 VVTGQDEVARLAVSLNKLAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEA 275 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 I G + E K Y+ I + L L +E+LDL R+E G ++ + + L +I Sbjct: 276 ILD---GMVTPEEMKLYLDTIREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIAS 332 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + Q + + ++ P V D+ + QVI+NLL NA +FT GG V + V Sbjct: 333 QVAARFQAAPEASKLHFHVEVSPRSL-VLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRV 391 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ ++++D GPGI E+P + F + A G GLGL I + I+ HG Sbjct: 392 E-SAPEEVVLTVQDTGPGIPPEELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHG 450 Query: 454 GQFLIRSKLREGVEVIAILPNTR 476 G+ ++S+ EG LP + Sbjct: 451 GRVEVQSRPGEGSTFKVTLPAAK 473 >gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 912 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 17/288 (5%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELR 261 + + + ++ I E+A +++ + +AE AK +FL++MSHE+R Sbjct: 360 RDITDQKKIETQLNEAIVFAEMATEIAEIAKTKAESSTQIAETAVKAKQQFLSNMSHEIR 419 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI+GF++V+ + KEY+ I SG L+ LIN+ILDL++++AG+ Sbjct: 420 TPMNAIVGFTKVLLKSELTA----KQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMVF 475 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380 + + + + + + + EKN+++ D ++ V D + Q+ILNL+SNAV Sbjct: 476 EKIPFKMELSISAMLHLFETKILEKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNAV 535 Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G+++V+V S SIKD G GI+E +I + +F Q S Sbjct: 536 KFTGK-GKIYVSVRLLSNNDDSASVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYG 594 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G GLGL I + ++ + GG + S++ EG L R E+ Sbjct: 595 GTGLGLAIVKQLVESQGGSIHVTSEINEGSTFSFTLNFQRTSQQATEE 642 >gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 713 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 9/269 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + E +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E + Y+ + + + LLNLI++ILD+S+IEAG EL+ + + + RE I Sbjct: 379 --DEIELRQAYMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATF 436 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + + +E+ + AD+ + QV+ N ++NA+KFT G + ++ Sbjct: 437 SHKKHDGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTK-GSITLSYTLNDDG 495 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GI + + F + S QG GLGL I QS++ GG+ + Sbjct: 496 QVRFCVTDTGKGIPAEQCHDIFNRFVKLD----SFVQGAGLGLSICQSLVERMGGKIGVE 551 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488 S + +G P T E+ Sbjct: 552 SCVGKGSCFWFTHPFTSATQSASTLVTEN 580 >gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 931 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 14/338 (4%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 LS+ AL F L V + V M T + + L Sbjct: 171 LSLFALCFFYLRTIRETIRRLSVPIMLLSRAADRAVKGARRIRMKDTNVVELHSLGASLS 230 Query: 209 KSNVKILSCQAEKDDLIAELEVA-KSLSDETR---KRAEEENLAKSRFLASMSHELRTPL 264 K + E+ I ++ A ++ D +RA+E AKS FLA+MSHE+RTP+ Sbjct: 231 KFANDMHELVDERTIEITKVNKALEAEIDRAEAFARRAKEAEEAKSNFLANMSHEIRTPM 290 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+G + V+ + N+ + Y+ + + L+ LIN+ILD S+IEAG+ E+ S Sbjct: 291 NGIVGMNTVLRETPL----NDMQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENS 346 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 A LI+++ E + + A +K I++ D +S V+ D ++QV+ NL++NA+KFT Sbjct: 347 AFDLIEVLEEVSSLFGMTASQKGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFT 406 Query: 384 AIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G + + + G I I+D G GI E + +F Q + G G Sbjct: 407 EE-GEIEIGLRIDEGGPLDSVANIWIQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTG 465 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 LGL I+Q ++ GG I S+ G + +P +R Sbjct: 466 LGLVISQRLVELMGGTIGIESESGVGSKFWIQIPLSRA 503 >gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1] gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1046 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 25/267 (9%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E N AK FLA+MSHE+RTPLN I+GF+++++ +E+I I S +LL Sbjct: 374 QEANEAKDLFLANMSHEIRTPLNGIVGFTQLLKST----NPTPDQEEFITVIENSSDNLL 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++N+ILDLS+I+A + EL + I+ I RA EK+IE+ IDP L + + Sbjct: 430 AIVNDILDLSKIKADKIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPL 489 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEI 417 D + Q+I+NL+SNA+KFT+ G + V + + + S++D G GI E + Sbjct: 490 IGDPTKISQIIVNLISNAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEEQK 549 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR- 476 + F Q ++ G GLGL I+ + A GG+ I S+ EG L + Sbjct: 550 DKIFDPFSQADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEEGEGSVFFFSLTLQKG 609 Query: 477 ---------------VLNFIPEDNHES 488 V +P+ N ES Sbjct: 610 ESASVLPRPVMNGFTVATVLPDKNTES 636 >gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 1104 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 16/264 (6%) Query: 230 VAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + +++ ++ AE+ AKS FLASMSHE+RTP+N +LG +I+ + Sbjct: 569 QQRIETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQLDL---- 624 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K +I S Q LLN+IN+ILD S+IEAG+ ++ +L ++ E + L+ ++ Sbjct: 625 QQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKVEQ 684 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 N ++ ++S + +D +RQ++ NL+ NAVKFT G V +T T G Sbjct: 685 NNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTID-GEVVITARIDETTDGSFL 743 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 SI D G GI + ++ SF Q + G GLGL I + + G+ + S Sbjct: 744 QCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNSM 803 Query: 462 LREGVEVIAIL---PNTRVLNFIP 482 EG + P +P Sbjct: 804 QGEGSTFSFTVQIQPRLSKEQDLP 827 >gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 633 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ A E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY G I + + LL LIN+ILD+S+IE+G Y+ + + ++ E + +LR + Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + D+ + QV+ NL+ NA+KFT+ G + + Y Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + + QG GLGL I + I+ GG+ ++S+ + Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617 Query: 465 GVEVIAILP 473 G LP Sbjct: 618 GSVFWFTLP 626 >gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 916 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 161/371 (43%), Gaps = 18/371 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W L L G Y +++ S LLIA + L ++ + + Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASL-LLIAAGLCLTGLLALRMGRTINRPLSQIKQAVAQ 207 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231 + H+ + I Q D ++ Sbjct: 208 LKDGHLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQ 267 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+ Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYL 323 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 324 GTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELV 383 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407 + S+ D ++Q++ NL+SNA+KFT G V + ISI+D Sbjct: 384 SLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQD 443 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSE 503 Query: 468 VIA--ILPNTR 476 LP TR Sbjct: 504 FWISLRLPKTR 514 >gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1954 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 101/414 (24%), Positives = 168/414 (40%), Gaps = 40/414 (9%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ +LT + + IA+ ++ ++ M + Sbjct: 1103 LNAVVLPVLFEGQVTAVIELASFSRFSEIHLTFFDQLSESIAIVLNTIAASMRTEELLKQ 1162 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L TQ + + A L + L ++N L +AE L Sbjct: 1163 SQSLAEELQTQQKELTGTNQRLEQQAQSLKASEELLKSQQEQLQQTN-AELQEKAELLAL 1221 Query: 225 IA-ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E+E ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1222 QNWEVERKNQEIEQARRSLEEKAEQLSLSSKYKSEFLANMSHELRTPLNSLLILAKLLAD 1281 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 L E EY I SG LL LIN+ILDL++IE+G + IS ++ R+ Sbjct: 1282 NPEQNLT-ERQVEYAATIFSSGNDLLELINDILDLAKIESGTIAVDIEPISFSELGRDLE 1340 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG- 394 + A +N++ + L D K +RQ++ NLL+NA KFT G V +TV Sbjct: 1341 RSFREVAINRNLDFQVQFSELLPARFHTDPKRLRQILKNLLANAFKFTEA-GHVRLTVEP 1399 Query: 395 --------------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 + D G GI + + +F Q Sbjct: 1400 AVAGWSADQTFLNQAARVAPRGETGVIAFRVSDTGIGIPLDKQRIIFEAFQQADGTTSRR 1459 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLNFIPE 483 G GLGL I++ I GG+ + S++ G LP +R+ P+ Sbjct: 1460 YGGTGLGLSISREIARLLGGEIRLESQVGRGSTFTLYLPQLESPTSRIAEPPPD 1513 >gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 723 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 11/250 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E AE N AKS FLA+MSHE+RTP+N ++G ++V+ + E + Y+ Sbjct: 199 ERQLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMADVLRDTDL----TEDQRLYV 254 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN++LD S+IEA + +L L ++E I++LQ A+EK +E+ Sbjct: 255 DTIKNSGEALLVIINDVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMA 314 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISI 405 D + + + D +RQV+ NLL NAVKFT+ G V V V + I+I Sbjct: 315 LDYDLFMPTTLVGDPGRIRQVLTNLLGNAVKFTSD-GHVLVRVTGVPDKETGKVQVNIAI 373 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIA + + F Q G GLGL I+Q ++ G + S+ + G Sbjct: 374 EDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGLGLAISQRLIQMMEGDIWVTSEEQAG 433 Query: 466 VEVIAILPNT 475 LP Sbjct: 434 SCFGFKLPLE 443 >gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] Length = 989 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 10/271 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + I+E + + +E RKRAE + AKS FLA+MSHE+RTP+ Sbjct: 553 AVSSVLLADREIFTGIIQDISERKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMT 612 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILGF++++ + E+ + R+G++L+ +IN+ILDLS+IEA + EL + Sbjct: 613 AILGFTDILLNNLRKKEDIES----ANIVKRNGEYLIGVINDILDLSKIEARKLELEQVR 668 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 ++ I+++R+ + ++Q++A K +E+ D + + D +RQ+++NLL NA+KFT Sbjct: 669 VNTIELIRDIVALMQIKADLKELELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTD 728 Query: 385 IGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + + D G GI+E + + F Q + G GL Sbjct: 729 S-GYVELRTRTIHLEDGFAQLQFDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGL 787 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL I++ + GG+ + S + G Sbjct: 788 GLAISKRLSEMLGGRIHVTSTIGSGSTFTIS 818 >gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1261 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 23/313 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + + I+ A + + E + + + ++ AE N +KS FL Sbjct: 713 IGLIYIMDVAPLEINLDHEMIMKIFATRTEAELERQHFEITLRQAKEAAEAANRSKSTFL 772 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHELRTPLNAILGFS+++ + K+ + IH SGQHLL LIN++LDLS+ Sbjct: 773 ANMSHELRTPLNAILGFSQLLSRSIYLSGDE---KDSLEVIHSSGQHLLTLINQVLDLSK 829 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372 IEAGR ++ L +++ M +A +KN+E+ P + ++ DE +RQ++ Sbjct: 830 IEAGRMKMQLRKFDLFHLLQSLERMFTQKANDKNLELKFDCHPDIPQLIYTDETKLRQIL 889 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--------------IKDNGPGIAEGEIP 418 +NLLSNA+KFT G + + V + IS +KD G GIA E Sbjct: 890 INLLSNAIKFTPR-GEIILRVYPRWSNLEAISSSRLPAGTYALSFEVKDTGVGIAPDECK 948 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q ++ + A++G GLGL I+Q + GG+ + S L G ++P Sbjct: 949 YLFQAFVQT-LSGQQAQEGTGLGLKISQQFIHLIGGEISVESDLGRGTTFQFMIPVEISE 1007 Query: 479 NFIPEDNHESTQY 491 + I +H S+++ Sbjct: 1008 DEI---SHTSSEH 1017 >gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum] Length = 1072 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 10/263 (3%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A + N KS+F+A++SHELRTP + ILG +++I + ++ I Sbjct: 681 RQAEESAIQANKLKSQFIANISHELRTPCHGILGMTQIILD---SKELTPSQRDNAETIK 737 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S +L++LI++ILD S+IE+G+ L S+ L+ +V + + + K I++ + Sbjct: 738 KSTDNLVSLIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMG 797 Query: 356 ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKDNG 409 P ++ D K ++Q++ NL+SNAVKFT G + ++ + SG S++D G Sbjct: 798 REYPVPPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTG 857 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + F Q + G GLGL I + ++ GG SK +G Sbjct: 858 IGIPHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFW 917 Query: 470 AILPNTRVLNF-IPEDNHESTQY 491 L +P + Q+ Sbjct: 918 FSLKLLIAAPNYLPSSVPPANQF 940 >gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1127 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ E + AEE AKS FLA+MSHE+RTP+N ++G ++ + + Sbjct: 528 ITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGLLMNTKL----D 583 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET + S + LL LIN+ILD S++EA + EL +L D + + ++AQ Sbjct: 584 ETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQ 643 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE+ + AD +RQ++ N++ NAVKFT+ G V + T Sbjct: 644 EKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFTSK-GHVLIKASLTLVDKVNA 702 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI ++ + SF Q + G GLGL I Q + + GG+ ++ Sbjct: 703 RLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLCSLMGGKIDVK 762 Query: 460 SKLREGVEVIA 470 S L G Sbjct: 763 SDLGHGSTFTV 773 >gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha] Length = 848 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 17/370 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + L ++ LLIA+ + + L + ++ + + Sbjct: 48 LGWVEVELS-HNGMLLRGYRSMFASLLLIAIGLMFTAALALRISRTINSPIGQIKQAVAQ 106 Query: 179 IMSMHVLDIS-------LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + ++ L + + + + I E + +E+ Sbjct: 107 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEEMQHSIDQATEEVRQNLETIEIQ 166 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+ Sbjct: 167 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RQLDYL 222 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S +L +INEI D S+IEAG+ L +L D++++ + + A K +E+ Sbjct: 223 GTIEKSADNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELV 282 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--YISIKDN 408 + ++ D ++Q++ NL+SNA+KFT G IS++D Sbjct: 283 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDT 342 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 343 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 402 Query: 469 IAI--LPNTR 476 LP TR Sbjct: 403 WISLNLPKTR 412 >gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 899 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 12/284 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 T L N ++ + + ELE + ++ ++ + + KS FLA+MSHE Sbjct: 455 LKMQTEELTTINERLEERTRDAEQKTHELEKVQVELRQSAEQLRQSSNYKSEFLANMSHE 514 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL SE++ L+++ EY IH SG+ LLNLIN+ILDLS++EAG+ Sbjct: 515 LRTPLNSILILSEMLAENHENHLSDDEL-EYAKVIHDSGEDLLNLINDILDLSKVEAGKM 573 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 +L + + +I + + A +K +E+ + L+ + D K QV+ NLLSN Sbjct: 574 DLWFREMDVYEIPQHIQNLFMPIANQKGLELSVDVANDLAEIFHTDVKRFHQVLNNLLSN 633 Query: 379 AVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 A+KFT G V V V S +S+ D G GI + + V SF Q Sbjct: 634 ALKFTEE-GSVTVKVDRARITPAMRQLSDTWITVSVTDTGIGIPKNKQNIVFESFQQADG 692 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + + GG + S +G LP Sbjct: 693 ATVRKYGGTGLGLSICREVTKLLGGWITLSSTEGQGSTFTVYLP 736 >gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 939 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 391 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 446 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E + I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 447 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 503 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L D+V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 504 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 563 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 564 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 623 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 624 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 656 >gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] Length = 856 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + L +++AE + AKS FL+ MSHE+RTP+N I+G +EV N Sbjct: 320 KERQIQRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEV---GRRYTHNPAR 376 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I S QHLL+L+N+ILD+S+IE+G+ EL E + + + + +A+E+ Sbjct: 377 IENCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARER 436 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-- 403 IE ++ +L + D + Q++ NLLSNA+KFT GG+V +T Sbjct: 437 GIEYNVYVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWI 496 Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D+G GIA+ + + F Q + G GLGLPI + + GG + S+ Sbjct: 497 GFEVRDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQ 556 Query: 462 LREGVEVIAILPNT 475 + G +P Sbjct: 557 VGSGSCFRVEIPFK 570 >gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 1068 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E + I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L D+V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 633 FNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 693 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 753 LGMAISRNIVNLMDGTIKVDSTLHKGTKITVTI 785 >gi|270157008|ref|ZP_06185665.1| legionella transmission sensor LetS [Legionella longbeachae D-4968] gi|269989033|gb|EEZ95287.1| legionella transmission sensor LetS [Legionella longbeachae D-4968] Length = 868 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 14/296 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + N I A+ + LE +K+ EE++ KS F+A+MSHE+RTP+ Sbjct: 253 ETIRDLNHHIEVATADLQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPM 312 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF+ V+ + PL +Y+ I S Q LL +IN+ILD S+I+AG+ L Sbjct: 313 NGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCI 368 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 +++ + E + + A +K I++ + ++ V D ++Q I NL++NAVKFT Sbjct: 369 PLNIRHCIDEVLALAAPNAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFT 428 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + I+I D G GI+ + + T+F Q +I G G Sbjct: 429 -DHGYVLIRTNVEQETEKDYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSG 487 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 LGL I + + G+ S+L +G A + +++ + E Q +A Sbjct: 488 LGLVICKKLCEEMKGRITFASELNKGSVFTAYIKVEKLVAY----EVERNQVHPFA 539 >gi|255589130|ref|XP_002534846.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] gi|223524480|gb|EEF27535.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] Length = 534 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 20/293 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMS 257 L + ++ + + EL +A E ++RAE+ KS FLA+MS Sbjct: 18 RLLERQTEELREQERQVRRRTNELALANDALQENEERLYQAKQRAEDATRQKSEFLANMS 77 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPL ++G E+ +E I + Q LL +IN++LD S+IEAG Sbjct: 78 HEMRTPLAGVIGMLGFALR---DTGLKESTREQILRGQANAQSLLAIINDLLDFSKIEAG 134 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + + +L + + + + +A ++ ++DP L V D +RQ+++NL+ Sbjct: 135 KLTIENIDFALDEAISHVATLFEEQAGAHSVGFAVQLDPDLPRFVVGDPTRLRQILVNLV 194 Query: 377 SNAVKFTAIGGRVHVTVGWTSGR--------GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 NA KFT G V V V + S++D G GIA +P + F Q Sbjct: 195 GNAFKFT-ESGSVTVHVERRAEDQHDRAGRNMIRFSVQDTGIGIAPDALPRLFQKFEQAD 253 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I + ++ GG + S G +LP + Sbjct: 254 ATTTRRYGGTGLGLAICRQLVELMGGTIGVASTPGVGSTFSFVLPLADGVQPT 306 >gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 938 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 137/264 (51%), Gaps = 11/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ + ++ AE+ ++AKS FLA+MSHE+RTPLN ++GF++++ + P+ Sbjct: 526 IHEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLSPV-- 583 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+ + S LL +IN+ILD S+IE+G+ EL + +L ++ + + ++ +AQ Sbjct: 584 --QEQYLRIANESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIITFQAQ 641 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRG 400 K++++ I L ++AD +RQV++NLL NAVKFT G++ + VG Sbjct: 642 SKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFT-DHGQIELKIKFVGVKDSGH 700 Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI + + +F Q G GLGL I+ ++ G + + Sbjct: 701 FVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGSKLQV 760 Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482 +S +G L P Sbjct: 761 KSSPGKGSTFYFDLRLRVGYEENP 784 >gi|148240608|ref|YP_001225995.1| hybride histidine kinase [Synechococcus sp. WH 7803] gi|147849147|emb|CAK24698.1| Hybride histidine kinase [Synechococcus sp. WH 7803] Length = 891 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 11/292 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 F+ +K+ +AEK L AE + ++ +K A + AKS FLA+MSHELRTP+NA Sbjct: 333 FFERRLKMTLLEAEKLRLEAEHQSMRA--HRAKKTAFLASKAKSEFLANMSHELRTPMNA 390 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G+SE++ E+ ++ + + I SG+HLL LIN +LDLS+IEAG+ + + Sbjct: 391 IIGYSEMLIEESEELEPSDFVVD-LEKILSSGRHLLGLINGVLDLSKIEAGKMTVYNESF 449 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385 S+ ++ + + AQ+ + + + D +RQ ++NL+ NA KFT Sbjct: 450 SINKVLDDVCATAEPLAQKNKNQFVCERPSRDDDMAFLDVTKVRQSLINLIGNACKFT-E 508 Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V ++ + S+ D G G++E + + + F Q + G GLG Sbjct: 509 NGSVRLSCRLLNSEAGIPQVSFSVIDTGIGMSEKQQAKLFSDFSQADASTTRQYGGTGLG 568 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE--DNHESTQY 491 L +++ + GG ++S L G ILP E D H ST+ Sbjct: 569 LSLSRKLSRLMGGDISVQSSLGVGSTFTMILPRYASSEVSEETSDTHASTEQ 620 >gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 587 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 109/438 (24%), Positives = 181/438 (41%), Gaps = 16/438 (3%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG--EV 103 + + L VA+ + T + +++ ++ Sbjct: 138 MNPAVRMGLLAFGVASATLYAAVLAFAADTLARTGVTLLSMEEERYRLLARNMSDVISRH 197 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 + + L G E + + L ALS +A + Sbjct: 198 RRNGAVMFISPAVENLL-GTSVAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEF 256 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + A + ++ Sbjct: 257 R-----------LRRDAGGDTRGPHHAVDFIWVEMRCRPL-DAAARTPSGAEQEVVAVMR 304 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + ++ + + R AE + AK+RFLA+MSHELRTPLNAI+GFSE++ E LN Sbjct: 305 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQALVLN 364 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+ SGQHLL+++N ILD+S++E+G +EL+ + + C +L LRA Sbjct: 365 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRA 424 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +E +++ + L ++ D + +Q+++NL+SNA+KFT GGRV V+ + + Sbjct: 425 RENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQ-LLL 483 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G GIA ++ + F Q + +G GLGL I +S++ HGG+ I SKL Sbjct: 484 RITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLD 543 Query: 464 EGVEVIAILPNTRVLNFI 481 EG V LP V Sbjct: 544 EGTTVSIALPIDCVAAEA 561 >gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL 4222] gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL 4222] Length = 896 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 582 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 22/385 (5%) Query: 105 VWRIWLLVGQI---AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN--FML 159 W+ + +G + G + LL + E ++ + + L + Sbjct: 44 RWQTSVAMGFVDFGFAGFNFGLLLYLRRNPQKVEIVSTLSLSLSFVLFLAIYLLATNNTM 103 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN----VKIL 215 ++F L + I + + I LA + A F L + + L Sbjct: 104 RLSLFFLLAASGFFLKGRKIGRLWLSGIILAIVAVHASGLFATGYSTLDIATTCVYLIAL 163 Query: 216 SCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 E + E E + S+E ++ AE EN AKSRFL +MSHE+RTP+N ILG + Sbjct: 164 FFIFENYESFKEKERERKQSEEEALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMA 223 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + L + ++ I SGQ LL L+N+ILD S+IEAG+ EL+ + S I Sbjct: 224 QLML---VSRLTEQEQHDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQI 280 Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 V E + A+ K + I P AD +RQ++ NL++N++KFT G V Sbjct: 281 VDEAATLFAESAKAKGLVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGS-GFVR 339 Query: 391 VTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + S+ D+G GI ++ + F Q + G GLGL I Sbjct: 340 IEGREIEPMADASLLEFSVTDSGIGIPPEKLTLLFRPFSQADSSTTREYGGSGLGLSIVH 399 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ +G Sbjct: 400 NLAKLMGGDAGVESEPGKGSRFWFR 424 >gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 725 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 161/401 (40%), Gaps = 13/401 (3%) Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 V L + + + + G + L P Sbjct: 56 VVQLRNYLALHEPDEAALEDARLRFELLYSRLTLLKGGDISGLIASIPLAERLSGKIESH 115 Query: 142 SATL-LIALSISALSNFML------PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 TL I L L A+ S +VV ++ + L + Sbjct: 116 LETLDAILSEADTLDAETLDRMSRELAALSESTERMVVTINGHLAEASTRERSRLKWLYG 175 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L ++ ++ + LE + T RAE + AKS FLA Sbjct: 176 LLLVLILAMSVAAMMVVTFLIRESRDNAAARRALEALSDELEVTAHRAESASQAKSEFLA 235 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHE+RTPLN ++G SE++ + + + Y IH S Q LL LIN+ILD S+I Sbjct: 236 TVSHEIRTPLNGVIGMSELLSEHHL----PDGARHYADTIHDSAQRLLELINDILDFSKI 291 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAGR +L ++SL ++V + + A+ K I + IDP+L + +D +RQ++L Sbjct: 292 EAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWIDPALPTHIVSDPGRLRQILL 351 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NLLSNA+KFT G V V+ I + D G GI E + F QG + Sbjct: 352 NLLSNAIKFTER-GEVRVSAFVADDGELGIDVVDTGCGIDEQRQAQLFEPFRQGDPSTAR 410 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I + ++ G+ + S+ G LP Sbjct: 411 RFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLPL 451 >gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 597 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 108/384 (28%), Positives = 175/384 (45%), Gaps = 4/384 (1%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 ++ D + L+G+ A L + IY T + Sbjct: 176 IRLARLDAGETD-RRAAELALLGEAAGELIIGFDEGGAVSRLVGDRHRIYGLETADLMGR 234 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + FL +A + A + + S G A F + Sbjct: 235 GLFHRVHVADRPAFLKLVSDTIATNAPACAELRLRIGSAPGAGEYAEPVFNSFEARSRPA 294 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 D + A+ + E R+ + + K+RFLA++SHELRTPLNAI+GF Sbjct: 295 GDGAGVICFLAD--VTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGF 352 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+++ E + P + +EY IH SGQHLL ++N ILD+S+IE+G ++ S + Sbjct: 353 SDMLASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQE 412 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + +C+ M+QL+A++ I + L + D++ +Q+++NLLSNAVKFT GRV Sbjct: 413 LADQCVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVA 472 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V + + G I++ D+G GIA ++ + F Q S A A +G GLGL + + ++ Sbjct: 473 VRL-YPDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVG 531 Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474 HGG + S + G V LP Sbjct: 532 LHGGAIAVESAPQRGTCVTVRLPL 555 >gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1180 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 144/283 (50%), Gaps = 10/283 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLI----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 L + N ++ S +E+ + A L + + + + + AK++FLA+ SHEL Sbjct: 442 EQLRRFNDELESQVSERTSELQSSNARLRAREVELEIINEELVQASEAKNQFLANTSHEL 501 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAI+GFSE++ MGPLN+ Y+ +IH SG+ LL +IN++LD+SRIEAG Sbjct: 502 RTPLNAIIGFSELMGNPRMGPLNS-KQHRYVENIHSSGKRLLKIINDLLDISRIEAGMMV 560 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + E ++ + + + A K +++ P + D + Q+++NL+ NA Sbjct: 561 VEEQVFPPREVANQVMAEMTSLASLKGLKLTMDACPDEGQLIRTDRGKLHQMMVNLVGNA 620 Query: 380 VKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT GG V +++ R + +KDNG GI ++ + F Q + A Sbjct: 621 IKFTPEGGSVTLSMEINVVSARQRELVVHVKDNGIGIPAADLEKIFEPFVQVHGGLARAY 680 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 +G GLGL + + + GG S+ +G I LP V+ Sbjct: 681 EGTGLGLALTRRQVRMLGGDVSGESREGDGSTFIIRLPFDTVV 723 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 127/262 (48%), Gaps = 11/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + R +AE + AKS FLA+MSHE+RTPLN +LG +++E + + Sbjct: 975 IDERKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLESTS----KD 1030 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI +S L L+ +ILDLS+IEAG+ L E+ S +D+ + + +L + Sbjct: 1031 AEQDEYIEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVK 1090 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSG 398 EK +++ ID L + D+ ++Q++ NL+ NA+KFT G V V Sbjct: 1091 EKGLKLDFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTET-GDVRVEACHLPCSNDDI 1149 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D G GIA+G I V F Q + QG GLGL I + ++ GG I Sbjct: 1150 QRVLFIVSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAI 1209 Query: 459 RSKLREGVEVIAILPNTRVLNF 480 S G LP Sbjct: 1210 DSTEGTGTTFYLSLPLKHSAPS 1231 >gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1] Length = 2544 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 18/295 (6%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLN 265 ++ + +A L AE + + ++ R K AEE AKS FLA++SHELRTPLN Sbjct: 1879 ENRSMVAVQKRALAKALEAETKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLN 1938 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G SE++ + N E I S LL +IN+ILD S++EA + +L A Sbjct: 1939 GVIGNSELLRDSEL----NRDQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIA 1994 Query: 326 ISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + D+VRE + + + + +KN++I Q I+ ++ D + QV+ NL+ N++K Sbjct: 1995 FNPEDMVREVVRAVSYSNREKTSKKNVKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLK 2054 Query: 382 FTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + + ++ ++D G GI ++ + F Q + G Sbjct: 2055 FT-EDGSITIGARLDKETQEHATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGG 2113 Query: 438 VGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489 GLGL I +S++ G+ + S+ G + + ++T Sbjct: 2114 SGLGLSICKSLIETMMKGKIRLESEENVGTTAWFTVTFEKAKPDVAAGDVQTKAT 2168 >gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 631 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L A I L A + E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 377 LLILIAAIAYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + +EY I + LL LIN+ILD+S+IEAG ++ S I + + Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 E ++LR +++ + + +++ D+ + Q+I N + NA+KFT G + + Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFTQT-GSIRMGY 551 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + D G G++E + V F + QG GLGL I Q I+ G Sbjct: 552 RLKDANTICFYVSDTGCGMSEEQCKHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G LP Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627 >gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar to ArcB sensor in E. coli [Pseudoalteromonas haloplanktis TAC125] Length = 896 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 153/342 (44%), Gaps = 21/342 (6%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 S+ L ++ L + + L T + + + I + ++F +T Sbjct: 442 SMDLLKSYQLLIGNRMWQVELHEPLVTTSWLIYWLAQIVGMLFVWLLVAFLISVTGT--- 498 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++ + +++A+E + KS+FLA+MSHE+RTP+N I G Sbjct: 499 -----------NVQIREQVARQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKG 547 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + + + + + YI + LL ++N++LD S++EAG+ +L + + + Sbjct: 548 ----LHYLALQQNDWQQARTYIEQADGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIG 603 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + E I ++Q K++EI D + + D ++QV+LNLL+NAVKFTA G Sbjct: 604 RLAEEVINLIQFEVSVKSLEIKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQ-GS 662 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + + W S Y+S+ D G GI++ + F Q + G GLGL I + + Sbjct: 663 ITLKI-WQSKTMTYLSVSDTGIGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKL 721 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + GG ++S +G LP L + + + Sbjct: 722 VELMGGAIDLKSTAGQGSTFTFSLPLNSPLPKVEKSEQSFSD 763 >gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype'] gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype'] Length = 1042 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 98/453 (21%), Positives = 183/453 (40%), Gaps = 31/453 (6%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLSLGKK----- 92 R ++ + A + F P W + + + + Sbjct: 206 VREKSLIAYVGYIGAVLLWQFVWGGHIQLVFSQGIPSWLVGHSELIFVIIGISSGVFTMT 265 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + ++ + LL+ Q GL C+ L + + + + A Sbjct: 266 FLETNRHSPTAHPIIKLLLICQGLTGLICFVDLLPSIWKNNLVYGVGLVAILSYIYAGFE 325 Query: 152 SALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLD-------ISLAGMLATALSFFTYI 203 + +NF Y +F A+ + + + L L F + Sbjct: 326 AFFNNFKPARYFIFAWGMLATGAIVGMLSLIGVLPSNDFTTYCFQVGVFLEAGLFSFALM 385 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ + + + +E + D RK A + + KS+FLA+MSHE+RTP Sbjct: 386 EKSRSQLESEVEQATNDLRNNVELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTP 445 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS E +E + ++ + +LL ++N++LD S+IEAG+ ++ Sbjct: 446 LNAILGFS----KELNNASLPTDQQEQVRIVNTAADNLLTIVNDVLDFSKIEAGKLTINN 501 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S ++ E + ++ + K++E + P + D ++QV+ NLLSNA+KFT Sbjct: 502 QPFSPNKLLEEMVTIMAKSSHSKHLEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFT 561 Query: 384 AIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + G + +V ++I+D G GI+ + + +F Q A+ QG G Sbjct: 562 SS-GTITFSVRGRALPHGIHEVNMTIEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTG 620 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I++ ++ G ++S L +G I L Sbjct: 621 LGLVISRELVRLMNGDLTLKSALGQGSTFIVSL 653 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 138/253 (54%), Gaps = 6/253 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ + +AE+ AK+ FLA+MSHE+RTP+NAI+GFSE++ M Sbjct: 635 ITERTRMENDLKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTEM----Q 690 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + Y+ I+ S + LL+L+N+ILD +++E G+ EL SL ++V + L ++A+ Sbjct: 691 DEQRRYMNTINNSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAK 750 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 KN+++ ++DP+ +S + +RQ+++NLL N++KFT G V + V Sbjct: 751 RKNLDLQLELDPNTASYYLGAPDRIRQILMNLLGNSIKFT-EHGYVKLVVKQLDNHELSF 809 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 SI D G GI + + + F Q ++ G GLG I++ ++ GG+ +S++ Sbjct: 810 SIIDTGIGIPQDRLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIG 869 Query: 464 EGVEVIAILPNTR 476 G ILP Sbjct: 870 SGSCFTMILPLQP 882 >gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 748 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 16/264 (6%) Query: 227 ELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L E + RAE +LAK+ FL+ MSHE+RTP+N I+G + + Sbjct: 328 MARRNTRLLAEEKDRAERAFAEAQQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALESIG 387 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++ + + + S +HLL+LIN+ILD+S+IE+G+ E+ L + + Sbjct: 388 ---DDGKVRTCLEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVF 444 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + +A E+N+ ++ + V D + QV+ NL+ NA KFT GG V + + + Sbjct: 445 RTQASERNVAFDTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLAD 504 Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G GI + + SF QG ++ G GLGL I + + G Sbjct: 505 AEDGCVWLRFAVDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMG 564 Query: 454 GQFLIRSKLREGVEVIAILPNTRV 477 G+ + S + G +P R Sbjct: 565 GRIRVASVVGHGSSFAVDVPLGRA 588 >gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107] gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107] Length = 974 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 8/287 (2%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 G+ + + + I + + + + +E+ D RK A E + Sbjct: 253 FFGLAESINTMAASMEAAQEDMQAHIDNAIEDLRETLETIEIQNVELDMARKEALEASRV 312 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+ SHE+RTPLN ILGF + + NE +EY+ I S Q+LL +IN I Sbjct: 313 KSEFLANTSHEIRTPLNGILGFINLALKTEL----NEKQREYMETIRDSAQNLLTVINGI 368 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IE+G+ L + + + V E + ML A EKN+++ I+P + + D Sbjct: 369 LDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPCIPRNLLGDALR 428 Query: 368 MRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSF 424 +QV+ NL++NA+K++ G + +++ +++ D G G+++ E + ++F Sbjct: 429 FKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQGIGLSQEEQENLFSAF 488 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q + G GLGL I + ++ G+ + S +G Sbjct: 489 SQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGSTFWFT 535 >gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 755 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K FLA MSHE+RTP+N ++G + ++ + P +EY I +SG LL LIN+I Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTP----QQQEYTETIRKSGDSLLTLINDI 291 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEAG+ +L + A ++ V + + ++ R K IE+ ++P + + D Sbjct: 292 LDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTR 351 Query: 368 MRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLT 422 +RQ+++NLL NA+KFT G V V+ + +++D G GI + Sbjct: 352 LRQILVNLLGNAIKFTQSGEVVVNVSAEPFAADTPLYELSFAVRDTGMGIPAERQNRLFK 411 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 SF Q + G GLGL I + + GG+ + S+ +G + + Sbjct: 412 SFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQGSTFAFTIQAEETEDTT 470 >gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 1748 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 153/323 (47%), Gaps = 18/323 (5%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 V A + +D L + + L + + +D I E Sbjct: 951 VEADLRALLERGEAMDRVFRVRLPDGEMRYVQVGARLERHGDGVRVTGINRD--ITETRA 1008 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + E +++AEE ++ KS+FLA+MSHE+RTP+NA+LG ++++ + +E +Y Sbjct: 1009 YEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRL----DERQLDY 1064 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +G I + + LL L+N+ILD S+I+AG+ +L L ++RE ++L +K++E+ Sbjct: 1065 VGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGNTNDKDVEV 1124 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV---HVTVGWTSGRGQYISIK 406 +++P+L + D+ ++Q+++NL NA+KFT G V I + Sbjct: 1125 LFRMEPTLPAMLIGDKLRLQQILINLAGNALKFTTQGQVVLAVRERARREGEVELRIEVS 1184 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA ++ + F Q + G GLGL I++ ++ GGQ + S+L G Sbjct: 1185 DTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLRVESQLGCGS 1244 Query: 467 EVIAIL--------PNTRVLNFI 481 L P ++ + Sbjct: 1245 RFWFDLTLGMAADQPLAQLPEPL 1267 >gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2] gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2] Length = 1023 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 10/258 (3%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E+ K++EE AKS FLA+MSHE+RTPLN ILGF E+++ + P +EY+ I Sbjct: 378 QESIKKSEEATKAKSLFLANMSHEIRTPLNGILGFLEILKTTDLTP----EQEEYVDTIS 433 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S ++LL ++N ILD+S+IE+ + + E +D + + A K+I+ +I Sbjct: 434 QSAKNLLQIVNNILDISKIESNKVTIEEIEFKALDEFESTLEIFATPASHKHIQYVTEIS 493 Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGP 410 P++ S+ D ++++I NL++NA+KFT G + V + Y ++D G Sbjct: 494 PNMPSILKGDILKIKEIITNLINNAIKFTPENGIISVKILLQEIINNKAKIYFEVRDTGI 553 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G++E + + +F Q ++ G GLGL I +S + G + S++ +G Sbjct: 554 GMSEAQKAKIFEAFTQADASVTRKYGGTGLGLTIVKSYLEMMGSHINVESEINKGSRFYF 613 Query: 471 ILPNTRVLNFIPEDNHES 488 + V++ P S Sbjct: 614 TINLE-VIDSKPRYKQNS 630 >gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 696 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 16/292 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 F ++ Q E L+ E + A++EN AK+ F++++SHE+RTP Sbjct: 285 GRLWFFEDITSFHSQQETLALL------NQALKEKSEIAQQENQAKTVFISNISHEIRTP 338 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 + ILG +E++ + N K+ + I RSG LL ++N +LD S+ + G+ EL Sbjct: 339 MTGILGITELLLNTPL----NPDQKDSLELIQRSGDKLLKIVNHLLDFSKADTGKIELES 394 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 ++ +++ + + +L+ + E+ P+ + D + Q++ NL+SNA KF Sbjct: 395 IPFNMQELLNDLVSLLRTEILKNKNELNILFPPNFPKLLKGDPVRIGQILTNLVSNATKF 454 Query: 383 TAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G V V +S + D G GI + +V F Q +I G Sbjct: 455 TKE-GTVEVGFHILEKTNSELSFRTWVFDTGIGIPPTKFNSVFEPFVQSDKSITRHFGGT 513 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GLGL I + ++ GG+ + S+ G L + E E+++ Sbjct: 514 GLGLSITKKLIELMGGKIHVESQPGIGTRFWFELKLEIPESIDEESFTENSE 565 >gi|317496915|ref|ZP_07955245.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895927|gb|EFV18079.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 462 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 7/298 (2%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + TA F I + K +A ++ + + K+AE+ +LA Sbjct: 138 MFAFFVTAGFFVLTIIGIILVLLWKARKAEAVAKLAASDTQKLNDKLEIALKKAEDASLA 197 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+RFL +MSH++RTP+N ILG ++++E E G E E++ + +SG LL +IN + Sbjct: 198 KTRFLNNMSHDIRTPMNVILGHAQLMENELKGKGMPEML-EHLEKLQQSGNLLLAIINNV 256 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+++IE+GR EL E+ + + + + +A++KNI + ++ V D + Sbjct: 257 LDMAKIESGRMELDENYCRIEAVWKSLFAVFDEKARKKNIALHYTMNVEHEHVLTDVTKV 316 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTS 423 +++++N+LSN++K+T +GG V V V S + I + D G G+++ + + + Sbjct: 317 KEILVNILSNSIKYTPVGGSVMVDVDELSCDESGYMIERIRVSDTGIGMSQDYLKKIFEA 376 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + KS G GLG+ I + + GG + S+L +G L R+ + Sbjct: 377 FTREKNTTKSKIAGTGLGMSIVKKYVDLLGGTINVESELGKGSTFTVTL-KHRIADES 433 >gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] Length = 1091 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 8/294 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +S + + + ++ ++ D+ AE + L + AE N AKS FL+ Sbjct: 526 HWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAEKARQERLLRDALTSAEAANKAKSEFLS 585 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSH++RTP+NAI+G S + + ++ I S ++LL LIN+ILD+S+I Sbjct: 586 RMSHDIRTPMNAIIGMSTI---GQLKAGAPNRVRDCFEKIDSSSRYLLTLINDILDMSKI 642 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373 E+G+ L++ + + E ++ + +E+ I+ + + DE + Q+++ Sbjct: 643 ESGKIVLAKRKFDFSEFINEINTIIYPQTRERGIDFVVHHHEPMERFYIGDELRLNQIMM 702 Query: 374 NLLSNAVKFTAIGGRVHVTVGW--TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNAVKFT GGR+ V + Y+ S+ D G G++E + + F Q + Sbjct: 703 NLLSNAVKFTTPGGRITVDIRELKRENGLAYLGLSVSDTGIGMSEEFMKKIYQPFEQENP 762 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + G GLGL I +I+ GG + S+ G +P V + E Sbjct: 763 GTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEKNCGTTFELSVPLEPVYDTEEE 816 >gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] Length = 911 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 8/310 (2%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 +A ++ ++ + ++ ++ E + + + Sbjct: 184 LARLAAGMTPEPLPMPVEAEFVQLVQRLNTLRDHLANAHDDLQTQVEQATQELQESMETI 243 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 EV D +RA + N AKS FLA+MSHE+RTPLN I+GF ++ + N + Sbjct: 244 EVQNIELDLAHRRALDANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRSEL----NARQR 299 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + R+ +LL L+N++LD S+IEAGR EL + ++ +V E + + +AQ+KN+ Sbjct: 300 EWLDHVRRACDNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNL 359 Query: 349 EIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR--GQYIS 404 ++ D ++ D +RQV+ NL+ NAVKFT G + V+V TS +S Sbjct: 360 QLLGLVYDDVPGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVS 419 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+++ + +F QG + + G GLGL I + ++ GG+ + S+ + Sbjct: 420 VSDTGIGLSQACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQ 479 Query: 465 GVEVIAILPN 474 G LP Sbjct: 480 GSTFFFTLPL 489 >gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 909 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 152/326 (46%), Gaps = 17/326 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + L VV I+ + I A + ++ +I Sbjct: 182 LARQILLLSILVVFVGQLLLILLPVIRSIQKLQQGAAKIGDGNLEYRLNIQTEDEIQELA 241 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + L + + ++ A+ N AKS FLA+MSHELRTPLN ILG++++++ Sbjct: 242 EAFNRMAGTLAESYRSLELKKELADTANRAKSEFLANMSHELRTPLNGILGYAQILQR-- 299 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++ + IH+ G HLL LIN+ILDLS+IEA R EL +S ++ + + Sbjct: 300 -DKTLTDKQQDGLRIIHQCGSHLLTLINDILDLSKIEAQRMELYKSDFHFPAFLQSVVEI 358 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++RA +K I + L VWADEK +RQV++NLL NA+KFT GG V T+ Sbjct: 359 CRIRADQKGISFIYQPTSELPIGVWADEKRLRQVLINLLGNAIKFTEKGG-VRFTISSVD 417 Query: 398 G-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 I D G G+++ ++ + F Q +K +G GLGL I+Q Sbjct: 418 QLLTNESNQKPIHKIRFQIIDTGIGMSQEQVAKIFLPFEQV-GEVKKQSEGTGLGLAISQ 476 Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472 I+ ++S++ +G L Sbjct: 477 RIVQLMDSTIQVKSEIGQGSTFWIDL 502 >gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] Length = 909 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL+ + I+ L + L V P+ ++T + LD + G + L Sbjct: 176 VFVSTLLLLLCMCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGFM---L 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ D +KRA+E Sbjct: 230 GELHMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ + T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTDLSATQTDYLQTIERSANNLLTIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L +L + + E I++L A EK +E+ + + V D Sbjct: 346 DVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDS 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLT 422 ++QVI NLL NAVKFT G + V + R + ++ D G GI+E + + Sbjct: 406 LRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTGIGISERQQSQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I Q ++ GG S+L G + Sbjct: 466 AFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHI 515 >gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 1120 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 12/260 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + ++ AE+ AKS FLASMSHE+RTP+N +LG +++ + ++ Sbjct: 588 ETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTKL----DQQQMH 643 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +I S Q LLN+IN+ILD S+IEAG+ ++ + +L ++ E + L+A++ N Sbjct: 644 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKAEQNNTI 703 Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405 + ++S + +D +RQ++ NL+SNAVKFT G++ VT T G SI Sbjct: 704 LILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFD-GKIVVTAKIDETTDGTSLVCSI 762 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI + T+ SF Q + G GLGL I + + GG+ + S L EG Sbjct: 763 IDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTSMLNEG 822 Query: 466 VEVIAIL---PNTRVLNFIP 482 + P +P Sbjct: 823 STFSFSIKIKPKLSKQQDLP 842 >gi|332702581|ref|ZP_08422669.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 500 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 42/372 (11%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W L+ + + W L ++ G+ P L + ++IA + + L Sbjct: 11 WLRLLIAILVVLVAAW--LRILLIGSHQPRVLFVTLYPAVMIAAMVGGIYA-GLLATALA 67 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 SF V T ++ V+D G+ + + + L + Sbjct: 68 SFLAAVWLEPTGFLIIEDVIDWLGMGIFIISNIMISLLAESLLR---------------- 111 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 R +AE N AKS FLA+MSHELRTP+N I+G E+ + + Sbjct: 112 ------------ARAQAEAANKAKSDFLANMSHELRTPMNGIIGSIEL----ALMKEPST 155 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + + Y+ +S +LL+++N+ILDLS+IEAG++EL L V + + L+ A+ Sbjct: 156 SVRNYLDMGRKSALNLLDIVNDILDLSKIEAGKFELQRIPFDLDQCVTDIVEALEGIAER 215 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399 K +++ Q ID + + D ++QV+ NL+ NA+KFT GR+ V V Sbjct: 216 KGVDLRQGIDSEVPRRLVGDAVRLKQVLTNLIGNAIKFTDQ-GRILVNVEDAGQGSDGRV 274 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G GIA I V SF Q +I + G GLGL I++ ++ G+ + Sbjct: 275 RIRFSVRDTGIGIAPDRIKHVFDSFYQANIENLAKYGGTGLGLAISKRLVEMMDGEIGVE 334 Query: 460 SKLREGVEVIAI 471 S L EG Sbjct: 335 SSLGEGSHFFFT 346 >gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1135 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 162/374 (43%), Gaps = 15/374 (4%) Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS--NFMLPY 161 +W+I ++ I++GL + + + YL + + LL+ A++ N+ Sbjct: 297 RLWQIHIIYSVISLGLIFIYNSSWFYERYIDHYLLLASTIILLLHAIPIAITKKNYYAKL 356 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 F + + + + + L F + + + AE Sbjct: 357 FSFGLSILAIAGMHDILVYRFELENWYQRFYPWGMLLFILSLA-------LILERRFAET 409 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E + +E + K+ FLA+ SHEL+TPLN I+G +E + G Sbjct: 410 RRLLQEY---NQKLETKNAALQEMDQLKNEFLANTSHELKTPLNGIIGIAESLIDGATGE 466 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L+ T + I SG+ L L+N++LD S ++ + L + + +I +++ + Sbjct: 467 LSQPTSSN-LSLIVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGMREITEVVLLLSRP 525 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 K +++ ++ S+ V ADE ++Q++ NL+ NA+KFT G + V+ Sbjct: 526 LVGNKKLQLINQVSSSIPPVDADENRLQQILYNLVGNAIKFTER-GTIKVSAEVV-NYYL 583 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I++ D G GI ++ + +F QG +I GVGLGL + + ++ HGG + S Sbjct: 584 KITVSDTGIGIPPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKLVQLHGGDIDVEST 643 Query: 462 LREGVEVIAILPNT 475 G LP + Sbjct: 644 PNLGSRFSFTLPIS 657 >gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3] gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3] Length = 793 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE E K AE+ N AKS FLA MSH++RTP+NAI+G + + + Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV 310 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +E + + I+ + + LL+LINE+LD+S+IE+GR LSE ++ +++++ ++M Sbjct: 311 ---DEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + K + + +V D + ++QV++N+LSNA+K+T GR+ + + + Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKA 427 Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +DNG G+ + + F + S QG GLG+ I+ I+ G Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S+ +G +P + P+D E Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520 >gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHELRTP+ I +SE + N ET K+++ I + + L+++ Sbjct: 342 MRKQFVANVSHELRTPITTIKTYSETLLD----VDNEETKKQFLSVIIKECDRMTRLVSD 397 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +L LSR+++G L+ ++L ++VR L++ A++KN + I + + D Sbjct: 398 LLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKNQTLSCSILQDIVA-MVDRDK 456 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV++NL+SNAV + GG+++V V I +KDNGPGI E ++P + F + Sbjct: 457 IEQVLINLISNAVTYVQEGGQINV-VLQKEEDKIKIIVKDNGPGIPEEDLPRIFERFYRV 515 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL IA I+ HGG+ L+ SK+ G +LP Sbjct: 516 DKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTFTVVLPAK 563 >gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 732 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 16/319 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLIAELEVAK 232 + ++ + L +++ LS + L + +L+ + L+ + Sbjct: 273 MGAVRLVRGYPLAVNITITEDLYLSSWRSTVRLLGGIGLVSLLALCGAFILMAIILKRRE 332 Query: 233 SLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 +++ ++ AEE N AKS FLA MSHE+RTP+N ILG +E++ + + + + Sbjct: 333 QDAEQALTLKREAEEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDTPL----DASQRT 388 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y G+++ HL+ +INEILD S++E+G E+ + ++ E I + + A K ++ Sbjct: 389 YAGNVYNGAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEVIGLHRNGATAKQLQ 448 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQY 402 I +I P+ + V AD +RQV+ NL++NA+KFT G + V Sbjct: 449 IRTEIAPAAALLVSADASRIRQVLGNLINNAIKFTPA-GAITVRFVALPDPADATQVQLE 507 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D+G GI+ + F Q I G GLGL I + ++ G S + Sbjct: 508 FSVADSGIGISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDI 567 Query: 463 REGVEVIAILPNTRVLNFI 481 G +P V + Sbjct: 568 GAGTRFSFRIPARMVEQPV 586 >gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 160/383 (41%), Gaps = 17/383 (4%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W+ + L ++ + + S L+ +A Sbjct: 240 WKRASVASLGGDFAPGQLAAVLAILAQPSFKQVTLNNDIAKKLKAKSCLA----MWATVG 295 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 F +V+++ + + V + + + L ++N + D Sbjct: 296 DFPLGLVSVARTSDVLGSVSPWMMTFVAGGFSLALLAGLWQLMRANSDRMKLAGRLD--- 352 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E + + ++ AE + AKS FLA+ SHE+RTP+N I+G ++ +G ++ Sbjct: 353 -EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLL----LGTRLSD 407 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 E++ +H S L+ +IN+ILD S+I+AG++ L L ++ + L + Q+ Sbjct: 408 KQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQ 467 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYI 403 K +E+ + P + + D ++QVI NL+ NA+KFT G V V S YI Sbjct: 468 KGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYI 527 Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+KD G G++ + + F Q ++ G GLGL I+ ++ GGQ + S Sbjct: 528 RFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVESI 587 Query: 462 LREGVEVIAILPNTRVLNFIPED 484 L +G E + V P Sbjct: 588 LGKGSEFFFEIGLA-VAEQAPRA 609 >gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876] gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876] Length = 896 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 13/282 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E K ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGG------RVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 T G + ++ + S IS+KD G GI++ + + +F Q A Sbjct: 630 TEKGSVSLHFDSIEISNLSHDMQSISNDWMKISVKDTGIGISKEQHQLIFEAFQQADGAT 689 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 690 IRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731 >gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1442 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA++SHE+RTP+NAILG + ++ ++ P ++++ I G+ LLNLIN+ILD Sbjct: 818 EFLATISHEIRTPINAILGMTSLLLDTSLDP----QQQDWVQTIRYGGEVLLNLINDILD 873 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+IE+ + EL E SL +V E + ++ +AQ K++E+ +DPSL ++ D +R Sbjct: 874 FSKIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLR 933 Query: 370 QVILNLLSNAVKFTAIGGRV-HVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 Q++ NLLSNA+KFT G V V G + + ++D G GI ++ + F Q Sbjct: 934 QILANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKPFSQ 993 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +I G GLGL I+Q + GG + S+ +G +P R + Sbjct: 994 VDSSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLKRPDQEL 1048 >gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 657 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 13/292 (4%) Query: 204 TYHLFKSNVKILSCQAEK-----DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + V + Q +K I E + + + ++AE N K FLA +SH Sbjct: 242 ANRVAQMRVVEIEWQGKKGYLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSH 301 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG+S+++ + N + + + I R+ LI+++LD+SRI G+ Sbjct: 302 ELRTPLNPILGWSKLLRTRKL---NQDKVDQALETIERNASLQAQLIDDLLDVSRILRGK 358 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L + L+ +++ I ++L A K+IEI ++D ++ V D ++QV+ NLLSN Sbjct: 359 LNLQTLRVDLVRVIQAAIETMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSN 418 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT GGR+ V + + Q I + D G GI+ P + F Q + + G+ Sbjct: 419 AVKFTPKGGRITVRLQEIDSQAQ-IQVSDTGQGISPDFFPYIFDYFRQENSTTTRSVGGL 477 Query: 439 GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489 GLGL I + ++ HGG+ S+ + +G LP + P + +S+ Sbjct: 478 GLGLAIVRHLIELHGGRIEAESEGIGQGATFTVTLPL---MPDSPINTQKSS 526 >gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 739 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +KS FLA+MSHE+RTP+ AILGF++++ + E + IH++G++LL LI Sbjct: 341 NRSKSEFLANMSHEIRTPMTAILGFTDILINDLNQTEEIEVVR----TIHQNGEYLLGLI 396 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDLS+IE G+ ++ S +IV + I +LQ+RA K I + + + + D Sbjct: 397 NDILDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTD 456 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTV 420 +RQ+++NL+ NA+KFT G ++ + + + + + + D G GIA +I + Sbjct: 457 PARLRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGIAAEQIENL 516 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + G GLGL I + ++ GG + S + +G I+P V Sbjct: 517 FLPFTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIPVGEVDPT 576 >gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29] gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29] Length = 883 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWIIISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1315 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 18/263 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I + + + E + AE N AKS FLA+MSHELRTPLNAI+GF+++++ + P Sbjct: 825 EDITDRKQIELALTEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPA 884 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+E + I+RS +HLL LIN++LDLS+IEAGR L+++ L ++R+ + Q++ Sbjct: 885 D---YQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIK 941 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395 A++K +++ + V D +RQV++NLLSNA KFT GG + V V Sbjct: 942 ARDKGLQLLFDYSDQVPQYVQTDAVKLRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGE 1000 Query: 396 ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 I+D G G+A E+ ++ +F Q S K ++G GLGL I++ + Sbjct: 1001 TPTANKPEEITLQFEIEDTGAGMAAEELESIFDAFIQ-SKTGKQHQEGTGLGLSISRKFV 1059 Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472 GG + S++ +G + Sbjct: 1060 QLMGGDLTVASQVDQGTVFRFEI 1082 >gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1240 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 157/369 (42%), Gaps = 16/369 (4%) Query: 111 LVGQIAIGLCWTLLTLVE---PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + G W L+T+ T LL + + F+ V Sbjct: 347 MAIARINGPDWLLVTVYPKKLVITAARSTAHFVLIIGLLSLIVEMLMLYFVTLNKVVNPL 406 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 A + + ++ + + + +I + ++E Sbjct: 407 KMFGRASAEIGQANYQLVARGDLELPSHRKDEMGILANVFKSMAGRIFEYSTTLEQKVSE 466 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 S E+ KRAE + AKS FLA MSHE+RTP+NAI+G S+++ ++ ++ Sbjct: 467 ---RTSELVESHKRAEIASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTSL----DKRQ 519 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++++ + S LLN IN++LD S+IEA + L E L D++R + +AQ K Sbjct: 520 RDFMEKVLSSSDVLLNTINDVLDYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQSKG 579 Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----Y 402 +E+ +D + W D + Q+++NL SNAVKFT G V + V +GQ Sbjct: 580 VELLLDVDEKVPFHWIGDPTRLGQILINLASNAVKFTEK-GEVVIRVKLLEQQGQLSTLR 638 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 SI D G GI + + + F Q +I G GLGL I + + G+ + S++ Sbjct: 639 FSIIDTGIGIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDSEI 698 Query: 463 REGVEVIAI 471 +G + Sbjct: 699 NKGSQFHFT 707 >gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 1176 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 25/335 (7%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 V A S+ L L+ + L +S + Sbjct: 310 WMMLFAAEVLFTVFAFVLYWNFSLKRQVSRRTAQLNQELAKYDRAEKELRESRAMLEQSN 369 Query: 219 AEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV- 273 E + ++E + ++ A+ AKS+FLA++SHE+RTPL+ I+ F+E+ Sbjct: 370 VELEHRVSERTRDLQAINAELQLAKEAADAATTAKSQFLANISHEIRTPLHGIMAFAELA 429 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + E P Y+ I +S + LL +IN++LD+S+IEAG EL ++ L D+V Sbjct: 430 LLKEKTPPH------RYLRAILQSSRALLEIINDLLDVSKIEAGHLELEQAPFMLDDVVH 483 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + A IE+ +DP++ ++ D ++Q+I+NL++NAVKFT GG++ VT Sbjct: 484 HVCTVALHNAHAGGIELVVDMDPNMQIALIGDAGRLQQIIMNLVTNAVKFTGPGGQICVT 543 Query: 393 VGW------------TSGRGQYIS-IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + R Q I ++D G GIA + + F Q + G G Sbjct: 544 LKQGHAEPLPSDTCPEQRRVQIICFVRDTGVGIAPEFLGQLFQPFRQVDASTTRRHGGTG 603 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 LGL I + ++ G+ + S+ G +P Sbjct: 604 LGLCICRQLVEMMHGEIWVESEPNVGSTFAFSIPL 638 >gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 850 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLLKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E +G I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 576 AIVGLTAIAGANI---ESQDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + Q E I+ V D ++QV +NL+SNA+K+T Sbjct: 633 FNLSELVDNLITLTQPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+D+G G++ + F + + QG G Sbjct: 693 DGGNIIFSIEEKPNGFSELGCYEFTIEDDGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 753 LGMAISRNIVNLMNGNIKVDSTLHQGTKITVTI 785 >gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 93/408 (22%), Positives = 171/408 (41%), Gaps = 26/408 (6%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +K ++++ + G+I +G+ W ++ G A L Sbjct: 212 LARIPLKNLLSHLFKPFARPGRITLGVVWKGASVASLGGDFAPGQLAAVLAILAQPSFKQ 271 Query: 153 ALSNF-----------MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 N + +A F +V+++ + + V + + Sbjct: 272 VTLNNDIAKKLKAKSCLAMWATVGDFPLGLVSVARTSDVLGSVSPWMMTFVAGGFSLALL 331 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L ++N + D E + + ++ AE + AKS FLA+ SHE+R Sbjct: 332 AGLWQLVRANSDRMKLAGRLD----EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIR 387 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N I+G ++ +G ++ E++ +H S L+ +IN+ILD S+I+AG++ L Sbjct: 388 TPMNGIIGMCNLL----LGTRLSDKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSL 443 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L ++ + L + Q+K +E+ + P + + D ++QVI NL+ NA+ Sbjct: 444 EIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAI 503 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G V V V + S S+KD G G++ + + F Q ++ Sbjct: 504 KFTER-GEVAVCVDFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFG 562 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G GLGL I+ ++ GGQ + S L +G E + V P Sbjct: 563 GTGLGLAISSHLIELMGGQLSVESNLGKGSEFFFEIGLA-VAEQAPRA 609 >gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 931 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + + +++L A EK +E+ I + Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + + +D G GIAE + Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 520 >gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 456 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+A++SHELRTPL +I GF E + + N +T +++ I + Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRNGAID--NPQTRDKFLDIIDFESE 276 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + I L + + + + ++ A+ KNI + + ++ + Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDL 336 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++ Q+++NL+ N +K+T GG V V+ G I ++DNG GI++ IP Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVEDNGIGISKENIPR 395 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ + G+ + S++ G + I Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKF 448 >gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2] gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2] Length = 883 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1721 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 130/301 (43%), Gaps = 38/301 (12%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H + K+L+ A+ I + + + +RA AKS FLA+MSHE+RTP+ Sbjct: 1237 RHYSDAEKKLLTVFAQMLVNIRKRHEIEQSLHQATQRARAATQAKSEFLANMSHEIRTPM 1296 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ILG + ++ + + + + +G LL +IN+ILD S+IEAG+ EL Sbjct: 1297 NGILGMTSLLLETELTG----EQRRFAEIVRNNGDALLEIINDILDFSKIEAGKLELEMV 1352 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 SL ++ L ++A +K IE+ I+P V D +RQ++ NL+ NA+KFT Sbjct: 1353 DFSLNKLLEGLAGALSVQAHKKGIELIYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFT 1412 Query: 384 AIG-----------------------------GRVHVTVGWTSGR----GQYISIKDNGP 410 G V V + S+KD G Sbjct: 1413 EKGEVFVQIKTGEAVAADTVAETEAGAPDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGI 1472 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI+ +I T+ SF Q +I G GLGL I++ + GG+ + S G Sbjct: 1473 GISPEKIETIFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTFAF 1532 Query: 471 I 471 Sbjct: 1533 T 1533 >gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein [Faecalibacterium prausnitzii A2-165] gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein [Faecalibacterium prausnitzii A2-165] Length = 1070 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 138/284 (48%), Gaps = 13/284 (4%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + L K+ + + EK I + E + AE + AK+ FL Sbjct: 510 IGSFIPLEWDGTKLVKALLASMDVSQEKKAEIESHK----ALKEAYRAAENASRAKTEFL 565 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 ++MSH++RTP+NAI+G + + + + E +G I +S +HLL LINE+LD++R Sbjct: 566 SNMSHDIRTPMNAIVGLTAIAGANI---ESQDKVVECLGKITKSSRHLLGLINEVLDMAR 622 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372 IE+GR L+E SL ++V + + + E + ++ I+ +V D ++QV Sbjct: 623 IESGRMSLAEEDFSLPELVDNLLTLTKPVIDEHHHQLEVHIEHIEHEAVCGDSLRIQQVF 682 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 +NL+SNAVK+T GG + +T+ SI+DNG G+ + F + Sbjct: 683 VNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRA 742 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + QG GLG+ IA++I+ G + S +G ++ Sbjct: 743 DDHRTTKVQGTGLGMAIARNIVNLMNGDIQVESAPNKGTKITVT 786 >gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] Length = 901 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 9/281 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L+ +++ DL +L+ + + RAE+ KS FLA+MSHE+RTP+ Sbjct: 494 NSLYNEFNELVGFLGIASDLTEQLKR-EQALAHAKDRAEKAVKVKSEFLANMSHEIRTPM 552 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N + G ++++ E + K + S ++L +IN+ILD S+IEAG+ L + Sbjct: 553 NGLFGVMQLLKQENLSSDG----KNLLDKALYSAKNLTVIINDILDFSKIEAGKLTLELT 608 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 L +++ L + A K I++ +I+ + D +RQ++LN++SNA+KFT Sbjct: 609 NFKLSELIEHINSDLSVNAFNKQIDLTFEINVKHDFWFGDPIRIRQILLNIISNAIKFTN 668 Query: 385 IGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG +V V TS Q IS+ D G GIA I + F Q + G GLGL Sbjct: 669 TGGVKVLVNALPTSNGLQ-ISVIDTGIGIAPDAIERLFNRFEQADKSTTRKYGGTGLGLS 727 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIP 482 I+QS++ G+ + S+ +G ++P V P Sbjct: 728 ISQSLIDLMQGEISVTSEENKGTSFSIMIPLVQAHVQQNTP 768 >gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 594 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE + ++ F+A++SHELRTP++ + G+SE I + G +E KE I+ Sbjct: 357 RDMTEERKLDKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAG--TDEEKKEMASVIYD 414 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+NE+LDL+R+EAG +L+ + ++ I Q A+EK I + + Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHDLQS 474 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D + QV+ NL+ NA++ T G V V + + RG +I ++D+G GI E + Sbjct: 475 KGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKV-LERSDERGLFIEVRDSGSGIPEED 533 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +P V F + A G GLGL IA++I+ H G ++SK G +P Sbjct: 534 LPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIPR 591 >gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 779 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + ++ AE + AKS FLA+MSHE+RTPLN ++G ++ T+ N Sbjct: 270 IKDRKNKEIELRKAKEEAEAASKAKSEFLANMSHEIRTPLNGLVGMVDL----TLLTDLN 325 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE + LL +IN+ILD S++EAG+ + + +++ E I A Sbjct: 326 CEQKENLMTAKSCTNSLLKVINDILDFSKLEAGKLVIENINFDIKNLIEEIIKANSSTAL 385 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399 K IE+ ++ + D +RQV+ NL++NA+KFT G + + V Sbjct: 386 AKQIELNYTFSSTIPQFLLGDPNRLRQVLNNLINNAIKFT-EHGEISLKVKNIETIDEHV 444 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 SI D G GI+E I T+ SF Q + G GLGL I++ + GG L++ Sbjct: 445 KLEFSITDTGIGISEENINTIFESFSQVDGSSTRTVGGTGLGLAISKQLTEIMGGNLLVK 504 Query: 460 SKLREGVEVIAIL 472 SKL +G +L Sbjct: 505 SKLGQGSSFYFVL 517 >gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] Length = 1039 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 12/257 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 712 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I + LL LI++ILDLS+IEAG EL+ S I L +++RE LR + Sbjct: 713 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVK 769 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 +++ + ++ + Q+++NL++NA+KFT G + G+ Y Sbjct: 770 TDAVKLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTEKGS---IRFGYEMRENELYF 826 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + + F + S QG GLGL I +++M + GG+ + S+ Sbjct: 827 YVADTGCGIPKDKQQNIFGRFVKL----NSFAQGTGLGLSICKTLMDHMGGRIGVESEEG 882 Query: 464 EGVEVIAILPNTRVLNF 480 +G LP + Sbjct: 883 KGSTFWFTLPYKPAVKE 899 >gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134] gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134] Length = 896 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|167624483|ref|YP_001674777.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167354505|gb|ABZ77118.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 579 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 8/299 (2%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 + L+ + K L E + + + + E ++RAE + Sbjct: 160 ANILGGLTLVIDAPRTWQNTIEKQLLLFCEMISAAHKRQQLLARTIEEKQRAESSERSTR 219 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A ++HELRTPLN +LG +E++ + P ++ + +H+SG+ L +IN++LD Sbjct: 220 DFVAMINHELRTPLNGLLGSAELMSDTQLTPH----QRQLLNTMHQSGELLRVIINDLLD 275 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 LS++ AG ++ E + S + + + R E + + + D ++ Sbjct: 276 LSKMSAGMLQIVEISFSPRQVCTMIYDIFKQRTAEFGLSFAFNYHTEVPERLLGDPDRIK 335 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+ +NL+ N++KFT G++ V + W G+ S+ D G GI ++ T+ F Q + Sbjct: 336 QLFVNLIGNSIKFT-QSGQITVDIEWQDGQF-CFSVTDTGCGIPADKVDTLFDPFTQVNN 393 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDNHE 487 + +G GLGL I + ++ G + S+L +G + LP P HE Sbjct: 394 SSNRVYEGTGLGLAICKHLVDEMHGDLTLTSELDKGTQFNIRLPLKLAPPSQKPNHTHE 452 >gi|166713792|ref|ZP_02244999.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 746 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 14/285 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L ++ Q E + ++ AE LAK FLA+MSHE+RTPLN Sbjct: 49 RLEEAERARERLQQELQRHG----KLEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLN 104 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+ E+I + ++ + S LL ++++ILD S++EA + EL + Sbjct: 105 GIIPMLELISSGQLSL----DQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITT 160 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+KFT Sbjct: 161 FNLRELLNGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTE 220 Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + + ++D G GIA + + SF Q + G GL Sbjct: 221 R-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGL 279 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 280 GLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 324 >gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550] gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550] Length = 896 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDTKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1127 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 203/457 (44%), Gaps = 23/457 (5%) Query: 41 HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK---KVMNSD 97 + ++L I L+ A + W T + + LA + + D Sbjct: 454 YAQALSHF--IALAVALVTAPLIAWKTGGRFYTARPFVPLATDHQLVGCSICEHRFEPED 511 Query: 98 IKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL-------- 149 + Y I L + ++L + A LL AL Sbjct: 512 VTHCPAYDGAICSLCCSLDARCEDACKPGAGYQEQMQQFLGRFLPAPLLSALRSRLGHFL 571 Query: 150 -SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + ++ F + F V +L+ ++S+ + + ++ T + + ++ H Sbjct: 572 SLLVVINGFSALLLSLIYFKTPVASLAEATLLSVTLWKVFFILVIVTGVICWLFVLAHES 631 Query: 209 KSNVKILSCQAEKD--DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + S + + + I E + +++AE N AKSR+L +SHELR+PLNA Sbjct: 632 RVVAEEESRRQTRLLTEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNA 691 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG+++++E + P KE +G I RSG++L +LI +LD+S+IEAGR +L + Sbjct: 692 ILGYAQLMENDDSVP---PHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQV 748 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + ++ + + M +L+A+EK + L V DEK +RQ+++NLLSNA+K+T Sbjct: 749 RIGLLMEQLVTMFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLLSNAIKYTDQ 808 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V +T+ + + +++D G GIA I + F + +S G GLGL I Sbjct: 809 -GSVSLTLRYR-SQVAEFTVRDTGEGIAAENIERIFRPFERIRNPGQSRT-GTGLGLTIT 865 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 + + GG + S+ EG L + + + P Sbjct: 866 RLLTEIMGGDISVESEPGEGSVFKVSLMLSSLHSASP 902 >gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 456 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+A++SHELRTPL +I GF E + + N E +++ I + Sbjct: 222 RRLE---KIRSEFVANVSHELRTPLTSIRGFIETLRNGAI--ENPEARDKFLDIIDFESE 276 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + I L + + + + ++ A+ KNI + + ++ + Sbjct: 277 RLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDL 336 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++ Q+++NL+ N +K+T GG V V+ G I ++DNG GI++ IP Sbjct: 337 VINTNKDRFHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIIEVEDNGIGISKENIPR 395 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + + G GLGL I + I+ G+ + S++ G + I Sbjct: 396 LFERFYRVDKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEVGRGTKFIIKF 448 >gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 1045 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 659 ITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILAST----DNL 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE+ I + LL LIN+ILDLS+IEAG E + + + ++R+ L+ + Sbjct: 715 EDKKEFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNK 774 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++I K ++ D + Q+++NLL+NA+KFT G + + Sbjct: 775 NPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQA-GLISFGYKLRDDNTLWFY 833 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI E + + F + + QG GLGL I + I+ G + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKL----NTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGK 889 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G + LP P + + Sbjct: 890 GSKFWFTLPFQPKKELFPSEEQK 912 >gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 778 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 11/274 (4%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E ++ ++ + R A+ N AKS FLA+MSHE+RTPLN ++G L ++ Sbjct: 376 TERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGL----MQLLQTTLLDD 431 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E + RS L L+ ++LD+S+IEAG+ ++ E SL ++ + + A + Sbjct: 432 EQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFAVNADK 491 Query: 346 KNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 KN+ + IDP L + +RQ++ NL+ N++KFT GRV + + + Sbjct: 492 KNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQ-GRVRLEMAPIAPAKNGEL 550 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D G GI E ++ + F Q + QG GLGL I + ++ G + Sbjct: 551 RLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGHIYME 610 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 S L +G V +LP + P E Sbjct: 611 SVLGKGTAVHVVLPFKSLQELPPARMREKADITG 644 >gi|220933274|ref|YP_002512173.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994584|gb|ACL71186.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 866 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 103/477 (21%), Positives = 170/477 (35%), Gaps = 50/477 (10%) Query: 20 GDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM----W 75 + I L +++ + +F + Sbjct: 5 RQRPSGSGQASPSALAMIRQRLASRADSEHQQALLRLVIGLAVFVYFHSPLFAAVVDPPA 64 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 L+ + + + E R L + G L Sbjct: 65 LEYARLGSTLFLAFSLGIFLAILLWPEPSPSRRLLGLAGDMTGAS-----LSLLLGGEAG 119 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + +++ ++ V VV + + V SL +L Sbjct: 120 APILAVYLWVIVGNGFRYGLPYLYAATVMALAGFAVVFTLSPFWSTHPVFSFSLMLVLIL 179 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + + L RA E N AK RFLA+ Sbjct: 180 VPLYTATLLRTLKG----------------------------AIDRANEANQAKPRFLAN 211 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTPLN ++G S+++ + N+ ++ IH S + LL LI ILD+SRIE Sbjct: 212 MSHELRTPLNGVIGMSDLLMDTPL----NDEQRDLGRSIHTSARVLLGLIENILDISRIE 267 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 +G+ L +V + M + +A+ K + + +IDPS+ ++ D +RQV++N Sbjct: 268 SGKLSSEREDFDLHRLVHGTLGMFEAQARGKGLHLGARIDPSVPFALHGDALHLRQVLVN 327 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 L+ NA+KFT G+V ++V ++D G GI E + SF Q Sbjct: 328 LIGNALKFTER-GQVELSVQLLEAPAEDAVRLRFKVRDTGIGIPEEAQARIFESFEQADT 386 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + G GLG IA+ ++ GG + S++ EG LP R IPE+ Sbjct: 387 TVTRRYGGTGLGTTIARQLVQLMGGTMGLESRVGEGTTFYFDLPLGR--QAIPEEAS 441 >gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 633 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ A E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY G I + + LL LIN+ILD+S+IE+G Y+ + + ++ E + +LR + Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + D+ + QV+ NL+ NA+KFT+ G + + Y Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + + QG GLGL I + I+ GG+ ++S+ + Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617 Query: 465 GVEVIAILP 473 G LP Sbjct: 618 GSVFWFTLP 626 >gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 602 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 5/327 (1%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + + + L A S + + +M V ++ L T S Sbjct: 280 LYSAFSEALLSACAGSPEHLELLRGGSYRSAMVVPLVARGQTLGTLTFVLAESDRRYGPS 339 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 ++ + A + L + + R RAE N AK FLA++SHELRTPLN+ILGF Sbjct: 340 DLSLAEDLAGRAALAFDNARLYAAEQRERNRAEVANRAKDEFLATVSHELRTPLNSILGF 399 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ P E + I R+ + L ++LD+SRI G+ +L+ + + Sbjct: 400 TQLLRRHAGDP---ERLAVALDAIERNAKAQARLTEDLLDVSRIITGKLKLTIQPVRVNA 456 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 +V I ++ A+ KNI + + ++ AD ++QVI NLLSNA+KFT +GGR+ Sbjct: 457 LVDAAIETMRTAAEAKNIALSAIYPEAPCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIR 516 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V+V +G+ +I++ D+G GIA +P V F Q + G+GLGL I + ++ Sbjct: 517 VSVERRAGQ-VHIAVADSGMGIAAEFLPFVFDRFRQADSSSTRTFGGLGLGLAIVRHLVE 575 Query: 451 NHGGQFLIRSK-LREGVEVIAILPNTR 476 HGG S +G + LP Sbjct: 576 LHGGSVEAHSAGPNQGATFVVSLPLAP 602 >gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I + SG HLL+L+N+ILD S+IE + EL+ ++ D++ Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396 ++K ++ + + +++ D+ +RQ+I NL+SNAVKFT G + + T+ Sbjct: 500 ICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTPK 558 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I ++D G GI + + + F Q + G GLGL I + + G Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618 Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490 + S +G +LP + +P D ++ T+ Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659 >gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] Length = 654 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 154/361 (42%), Gaps = 24/361 (6%) Query: 116 AIGLCWTLLTLVEPGTWTPE---YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 IG+ + + + L+IA+ +S + + + + Sbjct: 290 VIGMLFVGTPVAPYEALNSNIKVQTVVIAFLGLIIAMIVSIMLSKSIIRPM--------- 340 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + + + +L F ++ K + +I + EL + Sbjct: 341 -ENLKEAAQNFSEGRYGTKVPVDSLDEFGELSKIFNKMSDEISISHTKLQKHAQELSKSY 399 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E + KS +A SHELRTPL ++ G+ E++ TMG + NE + + Sbjct: 400 DELKE-------LDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEV-NEAQSKCLS 451 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + + L LI+ +LDLS+IE G ++ + +++ V E L+ EKNI + Sbjct: 452 IANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRLV- 510 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 D S++ D+ + QVI NL+ NA+KF G +++ + ++ ++D+G GI Sbjct: 511 -KDVQNLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGA-YEDEGNIHLIVQDHGAGI 568 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++ + F Q + K + G GLGL + +SI+ H G + S+L +G IL Sbjct: 569 PEKDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVIL 628 Query: 473 P 473 P Sbjct: 629 P 629 >gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603] gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603] Length = 733 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ + Sbjct: 323 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 382 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + ++++ ++ SG+H++ L+NEILD S+IE G++EL S L I+ Sbjct: 383 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 438 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V V + Sbjct: 439 IYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 497 Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + +Y I ++D+G GI + + + F Q G GLGL I + I Sbjct: 498 NIGDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 557 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ++S++ +G + ++ ++ + K Y Sbjct: 558 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596 >gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 635 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 165/319 (51%), Gaps = 7/319 (2%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 V L + + L +++ + + + + + +LS Sbjct: 304 LTFVGLGLAALCLPLIMAIMLNREINKR------VVQEAALDRESDKVRMEHAALLSISE 357 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + +L + + RAE+ N AKS FLA+MSHELRTPLNAILGFSE+I + + Sbjct: 358 ELANERVKLRRTNAELVAAKSRAEQANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMI 417 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G + + Y Y D+H+SG HLLN++N+ILD++RIEAG+ EL E I+L ++ ++ + Sbjct: 418 GN-DIDRYASYAADVHKSGTHLLNIVNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDV 476 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 Q +A + + + D+ ++Q+++NLLSNA+KFTA GGR+ ++ Sbjct: 477 QSQALAGGVLLAAPARNLGVVLRGDKGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDG 536 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G + I+D G G++ EI L F Q + +G GLGLP+A + HGG + Sbjct: 537 GLCVKIRDTGIGMSGDEIRQALELFRQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVD 596 Query: 460 SKLREGVEVIAILPNTRVL 478 S EG EV P RV+ Sbjct: 597 SIPGEGTEVSVRFPAKRVV 615 >gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL 200] gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL 200] Length = 896 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFNPIETNNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S L EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V + IP + E T Sbjct: 749 ATVDDVIPAEVVEET 763 >gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18] Length = 1285 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 672 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 731 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + S+ V Sbjct: 732 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAV 788 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V V Sbjct: 789 FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 847 Query: 392 TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + + D G GI E ++ + +F Q + G GLGL I Sbjct: 848 TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 907 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G + Sbjct: 908 SKRLVNLMGGDVWVTSEFGHGSKFHFT 934 >gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides brasiliensis Pb03] Length = 1406 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 790 EMDELKRKINKMVSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 849 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +E + +H LL +I++ILD+S+IEA R + S+ V Sbjct: 850 LTLDTD---DLKPYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAV 906 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK + + ++D S+ V D +RQ+ILNL+ NA+KFT G V V Sbjct: 907 FNALKTLAVKANEKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTER-GEVRV 965 Query: 392 TVGWTSGRGQY-------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + + D G GI E ++ + +F Q + G GLGL I Sbjct: 966 TILKSDREECRPNEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSI 1025 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG + S+ G + Sbjct: 1026 SKRLVNLMGGDVWVTSEFGHGSKFHFT 1052 >gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 917 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 16/284 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L N ++ + ++ ELE AK +E + E + KS FLA+MSHELRTP Sbjct: 460 SEELRMINEQLEERTKDAEEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTP 519 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++E L+ + +EY IH SG+ LL LIN+ILDLS++E+G+ ++ Sbjct: 520 LNSILILSEMLEENAAKTLSEDE-EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLL 578 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 + +++ ++ + A++K +++ + + DEK +Q++ NLLSNA KF Sbjct: 579 AEMNMSELPDQIERNFSHVAEQKKVQLKINKAQDVPNIIHTDEKRFQQIVKNLLSNAFKF 638 Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 T G V V++ + I++ D G GI + + + +F Q Sbjct: 639 T-ESGSVTVSIQRVADHRLTTAMRTVDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADG 697 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I GG + S++ +G LP Sbjct: 698 ATVRKYGGTGLGLSICSEFAKLLGGWISLSSEVGKGSTFTLYLP 741 >gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 741 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 100/454 (22%), Positives = 165/454 (36%), Gaps = 31/454 (6%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITL--AVYAANLSLGKKVMNSDIKIGEVYVW---- 106 PLF + A + + ++ + +L + W Sbjct: 151 PLFFAVAATLYVFLMIALGLLGFAFLKAKKIFRPFMGALIIITAAPVVANLAYIGWGVTV 210 Query: 107 ----RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFML 159 I L W L+ T ++ + +L+ +S Sbjct: 211 FGFDPTPFTFAVSLIALSWLLVNNSMMDTAAQGRTLMFYATQDPVILVDAGGQFVSANPA 270 Query: 160 PYAVF----------LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + P V L + + + + A + Sbjct: 271 ARQLIGDRIPDYGEPIEQLPEVGPLVKDLVKAGGLGKPGPIRLAGRAFDPRAVPIDSPIQ 330 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + +L D I E E A E AE N AK++FLA++SHE+RTPLN +LG Sbjct: 331 AQIPLLGWCISLVD-ITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLG 389 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + V+ + +E +E++ I SGQ LL I ++LDLS++EAG+ L +L Sbjct: 390 MASVLGETKL----DEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLR 445 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388 + + + RA+EK I + ++ L V D+ RQV+ NL+SNA+KFT G Sbjct: 446 NALEGARALFSARAKEKGIGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTET-GA 504 Query: 389 VHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V ++ + + D GPGI + F Q G GLGL I++ Sbjct: 505 VTISAAPAENGSILLVRVSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQ 564 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + GG + +G LP Sbjct: 565 LCHLMGGSLQVADDEPQGATFEIRLPLLPANEAQ 598 >gi|169335410|ref|ZP_02862603.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM 17244] gi|169258148|gb|EDS72114.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM 17244] Length = 526 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 9/263 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + +LE + K A+ N AKS FL+SMSH++RTP+NAI+G +E+ ++ Sbjct: 257 TDLRKMQTKLEKQSVELQKALKEAKNANRAKSEFLSSMSHDIRTPMNAIMGMTEIAQMNI 316 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + N + + + I SGQHLL LIN++LD+S+IE+G+ L + SL +++ + + Sbjct: 317 L---NTDKVNDCLKKISISGQHLLGLINDVLDMSKIESGKMTLRNDSASLPEVLENVVSI 373 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 LQ + + +I + + D +RQ +N+LSNA KFT G + V V Sbjct: 374 LQPMVKSREQSFSIRIRNLVHEDFYFDALRLRQCFINILSNATKFTPEKGSITVDVEEEY 433 Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + D G GI E + + SF + +G GLG+ I + I+ Sbjct: 434 TGDPDYSKLMFTFTDTGIGIKEEFLNNIFDSFTREKDGRVDKTEGSGLGMAITKKIVDIM 493 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 G ++SK+ G I LP Sbjct: 494 NGTIEVKSKVGMGTTFIVTLPLK 516 >gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 929 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 151/272 (55%), Gaps = 3/272 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L+ + ++L ++ L + ++ A+ N AKS FL+ MSHELRTP+NAI+GF++ Sbjct: 527 TELALKHLNEELEQRVQQRTELLLKAKEEADRANNAKSEFLSRMSHELRTPMNAIMGFAQ 586 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++E + P+ + + + +I +GQHLL LINE+LDL+RIE GR ELS + + ++ Sbjct: 587 LLETDRETPITLD-QADNVREIRHAGQHLLELINEVLDLARIETGRIELSLEPVEVPLLI 645 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 EC+ +LQ + IE+ ID +V AD +RQ++LNLLSNA+K+ G VH+T Sbjct: 646 GECMALLQPLTLGRRIELKLDID-GTGTVQADRLRLRQILLNLLSNAIKYNRDRGNVHIT 704 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + I++ D+G GIA + + F + A +G G+GL +++ ++ Sbjct: 705 CQPVAAGRIRIAVCDSGRGIAVDAMTRLFKPFERIESAY-DGIEGTGIGLALSKRLVEAM 763 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GG + S + G LP +++P D Sbjct: 764 GGTIGVESVVGAGSTFWVELPAAEAKDYLPSD 795 >gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Anabaena variabilis ATCC 29413] Length = 1399 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 5/268 (1%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + ++ ++ L AE + R+ AE N AK FL+ +SHELR PLN IL Sbjct: 975 QLILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFLSILSHELRNPLNTIL 1034 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G++ ++ + +T + + I RS Q +LI+++LD+SRI +GR + I L Sbjct: 1035 GWASLLSTHQLEA---DTVNQGLEAIERSAQAQAHLISDLLDVSRISSGRLRMDAQPIEL 1091 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 I I+ I +++L A+ KNI I ++DP+ ++ D ++QVI NLLSNA+KFT + GR Sbjct: 1092 IPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLLSNAIKFTPVRGR 1151 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +T+ +T Q I I D G GI+ +P + F Q + + G+GLGL I + + Sbjct: 1152 IDITLEYTDFHAQ-IQISDTGQGISPDFLPFIFERFRQADGSRTRSNTGLGLGLSIVRHL 1210 Query: 449 MANHGGQFLIRSK-LREGVEVIAILPNT 475 + HGG +S G LP Sbjct: 1211 VELHGGTVAAQSPGEGLGATFTIRLPLQ 1238 >gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 917 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 415 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 35/362 (9%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 +++ + L P+++ S+ + A Sbjct: 56 VVLLDVMMPGMDGFATCAALRRLPGGEHTPILIMTGLDDFESITKAYDAGATDFIVKPLN 115 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 +T+ + D ++ EL +++ + R A E KS FLA+MSHE Sbjct: 116 AMLLTHR--------IRYMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHE 167 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N +LG ++ + + + I SG LL +IN+ILD S+IE+G+ Sbjct: 168 IRTPMNGVLGMTDWLLDTPLTA----EQLDCAQTIRSSGDALLVIINDILDFSKIESGKL 223 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 L L + + + RAQ K + + +I + S+ D ++Q++ NLL+N Sbjct: 224 SLELLDFDLSTFLDRVMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLAN 283 Query: 379 AVKFTAIGG-RVHVTVGWTSGR---------------------GQYISIKDNGPGIAEGE 416 A+KF+ G V V + S+ DNG GI Sbjct: 284 AIKFSEHGSVSVLVELDQRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSA 343 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + G GLGL I + ++ GG S+ G +P + Sbjct: 344 FSKLFQPFVQADGSTTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQQ 403 Query: 477 VL 478 L Sbjct: 404 PL 405 >gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 300 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ +++ + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 57 ITQLKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENE 112 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++YI I+ + Q LL LIN++LDLS+IEAG EL + +++ E I + R Sbjct: 113 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYE-RNV 171 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++F + + + D ++Q++ N +SNA+K T G + V T G IS Sbjct: 172 PAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQ-GYIEVYYE-TDTDGIRIS 229 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F + S QG GLGL I +SI+ G + S + Sbjct: 230 VSDTGCGIPPDKLGMIFERFEKVD----SFAQGAGLGLSICKSIVEKMNGVITVDSTMGV 285 Query: 465 GVEVIAILP 473 G LP Sbjct: 286 GSTFTVELP 294 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 6/282 (2%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 A + ++ L + + + IA+ + + R+ A+ + KS+FLA+ Sbjct: 246 ADGSYLWLQDQLSQPHPERPHVIIGCLSDIADRMQIEDELVQAREDAQAASRVKSQFLAN 305 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLN +LG ++++ + P +E + + S L LI ++LD+S+IE Sbjct: 306 MSHEIRTPLNGVLGMADLLLDTGLSP----EQRELLDALQSSANALRGLIEDVLDISKIE 361 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 AG+ E+ + L+++V E + +RAQE+ +E+ +P+L V D RQ++LN Sbjct: 362 AGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVDAEPALPARVLGDPVRFRQIVLN 421 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT G V V V + +S++D G G+ E + SF Q + Sbjct: 422 LLSNAVKFTPA-GEVVVRVRQRADEHIELSVRDTGVGVPEERREAIFESFTQSDGSTTRR 480 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + + GG+ + G LP R Sbjct: 481 FGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSLPLPR 522 >gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 644 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + AE + + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 224 LGHLARHINNLASALEQASAEQQQTIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 283 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +++E + +Y S HLL +IN+ILD SRIE +L Sbjct: 284 VMGMLQLLETTPLSN----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 339 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ + + ++ + V D +RQ++LNL+ NA+KFT Sbjct: 340 NLGELITSSVQSFQHSAQQRGLGLHLQLPADIDQLQVNGDPTRIRQILLNLVGNALKFTE 399 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W Q I S++D G GI + + +F Q +I G GL Sbjct: 400 R-GQVQVEARWQVVDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 458 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL IA+++ GG+ S + +G +P Sbjct: 459 GLSIARTLAERMGGKLRGESHVGQGSTFTLEMPLALASQAP 499 >gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] Length = 2359 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 16/294 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ +F + +N ++ Q E E AK E R EE Sbjct: 1824 VGISLVNAFLFREARKISAANAAMIEAQKRALAQAREAEQKAKEAEAEARHNVKLKEEAA 1883 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ ++ + Y+ I LL LIN Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKQTSL----DRQQDVYVESIRVCADTLLTLIN 1939 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ +++ ++L + E + L+ +++ +E + D V D Sbjct: 1940 DILDFSKLEAGKMKVTTVPLNLRQTIAEVVRALRYTHRDRGLETIEDFDDIDPDLLVLGD 1999 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V S ++ + D G GI+ + + Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEESENTIRVTCTVADTGIGISNDHMARLF 2059 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGV--EVIAIL 472 F Q + + G GLGL I ++I+ GG+ + S + G Sbjct: 2060 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLHSDVGVGTKVTFTVTF 2113 >gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 Y L +S +++ A++ + R++AEE + KS FLA++SHE+RTPL Sbjct: 288 YTLTESELELAKEAADQLGTAIAHATLYEELEVARQKAEEASRLKSEFLANVSHEIRTPL 347 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF ++I + E +++ + H HLLN+IN+ILD+++IEAG+ EL+ + Sbjct: 348 NGMIGFLKLILEGM--ADDPEEQNQFLAEAHNLSIHLLNIINDILDIAKIEAGKMELTYA 405 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382 + L ++ + ++ +A+ +N+ ++ V ++ + + QV+LNLL NA+KF Sbjct: 406 PVKLNELFSDVESFMRPQAEMRNLSFRMQMPATSDEIIVQSNYQRLLQVMLNLLGNAIKF 465 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG V V+ + + D G G++ + + F Q + Sbjct: 466 THEGG-VTVSADLVLKKSKLQDQQFPGLVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRT 524 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 G GLGL I+Q ++ GG+ S G V +P Sbjct: 525 RQYGGTGLGLAISQKLVEAMGGEVHFYSLGEGLGSTVTFTVPL 567 >gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] Length = 1221 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 13/284 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E + ++ R AE N AKS FLA+MSHE+RTP+N ++G +V++ Sbjct: 532 RHFTGIMRDMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLD 591 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ +E I S LL +I +ILD S+IEAGR E+ ++ ISL +V Sbjct: 592 QTSLSTY----QREMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERA 647 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA---IGGRVHV 391 L A K +E+ +DP+L V D +RQ+++NL++NA+KF++ GRV V Sbjct: 648 CGTLTHMAASKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAV 707 Query: 392 TVGWTS--GRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + DNG G+ + + T F QG + G GLGL I + Sbjct: 708 RASPAEEVDGDVVTVMFQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICR 767 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 ++ G+ + SK G +P + + ++ T Sbjct: 768 RLVELMKGEISVESKPDVGSVFTVRIPFGIIQREVIQEEELETD 811 >gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1061 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 9/303 (2%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKS 233 I L ++AG + I + L E ++ Sbjct: 480 SFIHPPWNLHTAIAGGFLISGLVAWLIILIYSHTAQIEHQVLERTRALSKSNESLSQSRE 539 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + AEE N AKS FLA+MSHE+RTPLN ++G ++ + + + Sbjct: 540 KLRLAKAEAEEANRAKSDFLANMSHEIRTPLNGVIGSLTLVLQ---SASIAKEQRGLLDI 596 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 +S LL +IN+ILDLS+IEAG L +SL ++ +E +L+ +A EK + Sbjct: 597 SRQSALTLLEIINDILDLSKIEAGNLILDRKPVSLTELTKETGELLRAKALEKGLVFNIP 656 Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGP 410 P V D +RQ++LNLL NA+KFT G + + + + + +++ D G Sbjct: 657 STPLPAIEVIGDPLRIRQILLNLLGNALKFTHEGEVNLAIRARFENEKYWLSMAVSDTGI 716 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G++E + + F Q + G GLGL I + I A G+ + S+L G Sbjct: 717 GLSEEQKRQLFQRFKQADSSTTRLYGGTGLGLSICKEIAALMDGEIHVESELGSGSTFTF 776 Query: 471 ILP 473 P Sbjct: 777 EAP 779 >gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 769 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 18/352 (5%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + + L + + + + AL ++ +++ +LA + Sbjct: 1 MTVQAGGLRAWSIAATLAALAAALGAALQRSSLQGPWRAATAVSAVLAVVCGICAAAGAY 60 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSH 258 L+ + E+ +L E + ++ AE LAK FLA+MSH Sbjct: 61 RAARAQHALAQRLEESELARERLQQELQRHGELEQELLRAKQTAEAATLAKGEFLATMSH 120 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN I+ E+I + ++ + S LL ++++ILD S++EA + Sbjct: 121 EIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 EL + +L +++ + +LQ A+ + + + I+PS+ V D +RQV+ NL+ Sbjct: 177 LELEITTFNLRELLDGVVQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIG 236 Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + + ++D G GIA + + SF Q + Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTR 295 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri] Length = 744 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 94/266 (35%), Positives = 137/266 (51%), Gaps = 11/266 (4%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 +AE+ LI + R +AEE N K FLA +SHELRTPLN ILG+++++ Sbjct: 487 AEAERIQLI----RQQVQEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLLR- 541 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G L++ + I R+ + LI ++LD+SRI G+ L+ +A++L + I Sbjct: 542 --AGKLDSAKTDYALETIERNAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAI 599 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +QL AQ K+I+I DP++ V D ++QV+ NLLSNAVKFT GGRV + + Sbjct: 600 ETVQLAAQAKSIQIETVFDPNVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECV 659 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I + D G GI+ +P V SF Q I G+GLGL I + ++ HGG Sbjct: 660 DSQ-AEIKVSDTGKGISPDFLPHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTI 718 Query: 457 LIRSKLRE--GVEVIAILPNTRVLNF 480 S E G LP V+ Sbjct: 719 YAES-PGEDLGATFTVRLPLIAVVKT 743 >gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 842 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 7/259 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L ++ +L + + + AE+ N AKS FLASMSHELRTPLNAILG+ + Sbjct: 349 RQLGVAVQQGELFKQTQKQAEELAMAKMSAEKANQAKSEFLASMSHELRTPLNAILGYVQ 408 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ T + ++ + I+ SG+HLL LIN++L +S+IEAG+ L+E+ L ++ Sbjct: 409 LMLRSTALSFD---HRNNLQIINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLL 465 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E +LQL+A K +++ D ++ + DEK +RQV++N++ NA+KFT GG + V Sbjct: 466 YELDTLLQLKASSKQLQLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG-ITV 524 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V W G + +++D G GI E+ + + F Q + I S +G GLGLPI+ + Sbjct: 525 KV-WCKGHQLFFAVQDTGQGIENEELEVLFSPFTQATAGIDSG-EGTGLGLPISAKFINL 582 Query: 452 HGGQFLIRSKLREGVEVIA 470 GG + S++ EG Sbjct: 583 MGGDITVNSRVGEGTTFTF 601 >gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 898 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+N ++G ++++ + EY+ I S +LL+LI Sbjct: 523 NQAKSDFLANMSHEIRTPMNGVVGLTQLLRFTELTT----EQVEYLDSIETSADNLLSLI 578 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDLS+IE+G+ EL + SL +++ II + R EK ++I Q+I L V D Sbjct: 579 NDILDLSKIESGKVELEFTDFSLRKAIQDIIITQKSRIFEKGLQIKQEIAADLPELVNGD 638 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVL 421 + ++QV +NLL NA+KFT G + V++ I++ D G G+++ + + Sbjct: 639 QLRVKQVFINLLGNAIKFTERGTITIAVSILERESNRALIRITVSDTGIGMSQETLQKIF 698 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q + G GLGL I + + GG + S G L Sbjct: 699 DPFAQADSSTTRRFGGTGLGLSICRKLAELMGGAITVESIPGSGSSFHLDL 749 >gi|331213871|ref|XP_003319617.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298607|gb|EFP75198.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1640 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 133/267 (49%), Gaps = 12/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ S + + + ++ L A + R+ AE N +KS FLA+MSHE+RTP+N I+G ++ Sbjct: 1064 EMNSLKNQINSMVFSLRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQ 1123 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ +LL +I+++LDLS+IEAGR + + +L + Sbjct: 1124 ITLATELTRH----QRENLTIVYAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTSI 1179 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + L ++A N+++ +I P++ V D MRQVI NL+ NA+KFT+ G V + Sbjct: 1180 FDVLKSLAVKALTSNLQLVFEIAPNVPDFVVGDPFRMRQVITNLIGNAIKFTSS-GHVGL 1238 Query: 392 TVGW------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + T + D G GI ++ + +F Q + G GLGL I+ Sbjct: 1239 SCKVATLDPVTGEHRLEFCVFDTGIGIKPDKLNLIFDTFCQADGSTTRKYGGTGLGLTIS 1298 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472 + ++ G + S+ G + Sbjct: 1299 KRLVNLMEGTLWVESEYNHGSRFYFTI 1325 >gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 633 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ A E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY G I + + LL LIN+ILD+S+IE+G Y+ + + ++ E + +LR + Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + D+ + QV+ NL+ NA+KFT+ G + + Y Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + + QG GLGL I + I+ GG+ ++S+ + Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617 Query: 465 GVEVIAILP 473 G LP Sbjct: 618 GSVFWFTLP 626 >gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 876 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 102/459 (22%), Positives = 179/459 (38%), Gaps = 46/459 (10%) Query: 28 PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANL 87 P D + ++ + + S+ +P+ LL W P W+ Sbjct: 26 PGAPDPENQLDLVQITSVIVAVSSVPVMALL------WIMAGPRLGAWAAAASVAVIIGA 79 Query: 88 SLGKKVMNSDIKIGEVYV--WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145 L ++ + V V I + G + G+ L ++ P L + + Sbjct: 80 FLAERGHRRISAVILVIVLNAAIPFIGGVLGPGMADALFPVLLC---VPFVLLPFLRLRV 136 Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++ + + + +L A V ++ + + + + F T+ Sbjct: 137 VLLATAATMGIILLTAAPIWPTHWVTLSEGERYWLR---------LGIILSAGLFAVTTF 187 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 LF N ++ + AEE +LAKS FLA+MSHE+RTP+N Sbjct: 188 ALFFVNRVLVEKR----------------LRRAVLSAEEASLAKSEFLANMSHEIRTPMN 231 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 + + ++Y S LL++IN+ILDLS++EAG+ A Sbjct: 232 G----VLGMLGLLLDTRLAAEQRDYAETARASAMTLLDIINDILDLSKVEAGQMAFEPVA 287 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 L + + L + A K +E+ + DP + D +RQV++NL+ NA+KFT Sbjct: 288 FDLRSAIEDVFDQLAVLAAPKALELIVRYDPETPSRIVGDAGRIRQVLVNLVGNAIKFTQ 347 Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + +S++D GPGI+E E + F Q ++ G GL Sbjct: 348 R-GHVQLRATSEELDDGSVDLKLSVEDTGPGISESEREQIFDKFRQLDVSSTRVHGGTGL 406 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GL I ++++ GG+ + S+ EG +P R Sbjct: 407 GLAICRALVHGMGGEIGLESRRGEGSTFWFSIPVERASE 445 >gi|228951472|ref|ZP_04113578.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808179|gb|EEM54692.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 883 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHNNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 731 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 19/303 (6%) Query: 186 DISLAGMLATALSFFTYITYHLF----------KSNVKILSCQAEKDDLIAELEVAKSLS 235 I +AG + + Y L ++N L E + + +L+ AK+++ Sbjct: 253 TILMAGFILLLFAGLFYSISRLSLADQKAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVA 312 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E + AE N AK+ FL++MSH++RTP+NAI+G + +I N EY I Sbjct: 313 TEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRH---DAGNKAKVIEYADKID 369 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S QHLL +IN++LD+S+IEAG+ S S++D+V+E + + EK + + Sbjct: 370 ISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQQTLTIIKE 429 Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409 V D+ + Q+ NLLSNAVK+T GG + V + + DNG Sbjct: 430 NIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFLVSDNG 489 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G++ T+ +F + ++ + QG GLG+ I ++++ GG + S+L +G Sbjct: 490 MGMSADFKDTIFDAFTRAERSLTNKIQGTGLGMAITKNLVEAMGGTIDVDSELGQGSCFE 549 Query: 470 AIL 472 +L Sbjct: 550 VLL 552 >gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1313 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 14/260 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + A+E + AKS FLASMSHE+RTP+N ++G + ++ + P ++++ Sbjct: 778 ELALRRAKTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLLMETDLSP----EQRDFV 833 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL +IN+ILD S+IE+G+ +L L + E + + L+A K++E+ Sbjct: 834 NTIRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFALQASAKHLELA 893 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QY 402 I P + + D +RQ+++NL++NAVKFT+ G + + V Sbjct: 894 YHIAPDVPEWIIGDITRLRQIVVNLVNNAVKFTSA-GSIAIEVRRRPPTVPANLKRFPLE 952 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++D G GI + + +F Q + G GLGL I Q + GG + SK+ Sbjct: 953 FVVRDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKV 1012 Query: 463 REGVEVIAILPNTRVLNFIP 482 EG I + P Sbjct: 1013 GEGSSFIFTITTEEAAAGAP 1032 >gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396] Length = 1437 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 8/255 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I E + E + A+ + AKS FLA+MSHE+RTP+NAILG +++ + Sbjct: 761 NRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNL-- 818 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E ++Y+ S + LL ++N+ILD S+IEAG+ L SL ++++ +++ Sbjct: 819 --EERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITA 876 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 +K +E+ IDP + + D ++Q+++NL NAVKFT G + V + Sbjct: 877 NLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEED 936 Query: 400 GQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S++D G GI+ ++ + F Q + G GLGL I + ++ GG+ Sbjct: 937 RLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIA 996 Query: 458 IRSKLREGVEVIAIL 472 S+ EG + Sbjct: 997 AESEEGEGSVFRFSI 1011 >gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 772 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 107/277 (38%), Positives = 157/277 (56%), Gaps = 2/277 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + + + + + AEL VA + ++RAE N AKS FLA+M Sbjct: 495 QVRLRESERRLMATIGDLSASRITLEQQKAELSVANANYQAEKERAEAANRAKSEFLANM 554 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFSE+++ + GPL +E Y EY DI SG+HLLN+IN+ILD+S+IEA Sbjct: 555 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 614 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ I L ++ E + + A++KNI + Q++ L +++AD + M+QV+LNLL Sbjct: 615 GHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQQVSSGL-TMFADRRAMKQVLLNLL 673 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNAVKFT GGR+ + ++I D+G GI + + F Q ++ Sbjct: 674 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPRDALQKIGQPFEQVQSQYAKSKG 732 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++S+ HGG I S G + +P Sbjct: 733 GSGLGLAISRSLTRLHGGSIKIHSTENVGTIISVRIP 769 >gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 641 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 96/256 (37%), Positives = 143/256 (55%), Gaps = 1/256 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + A+ E A+ N K+ FLA+MSHELRTPLNAILGFSE+I E GP+ Sbjct: 386 HDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIISREMFGPV 445 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E Y+ Y DI+ +GQHLL +IN+ILD+SRIE G + L + ++ C+ ++ R Sbjct: 446 G-ERYRTYGQDINAAGQHLLAMINDILDISRIEIGAFTLCIEPVDPHELAYSCLRLVGSR 504 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ N+++ + + SL + D + +Q+++NLL NAVKFT GG+V + G Sbjct: 505 AEAGNVDLSEDMPESLPHLMIDSRRTKQILINLLGNAVKFTPPGGKVTLRGETRDSGGIA 564 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G G++E ++ L+ FGQ + +G GLGLP+A+S+ HGG I S Sbjct: 565 FHVIDTGIGMSEADMAVALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEITSIP 624 Query: 463 REGVEVIAILPNTRVL 478 +G V P + V Sbjct: 625 GKGTTVSVYFPASCVA 640 >gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3] gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3] Length = 883 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|116625119|ref|YP_827275.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228281|gb|ABJ86990.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 618 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 183/453 (40%), Gaps = 14/453 (3%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 ++ ++ L + P + LV + W IF + L L Sbjct: 7 ARRGVRSVLLALRLRGPLSADPTAQILHALVLALTIWSAIWTIFTLPLYPNLMARLVRLR 66 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + + + + + W T + E + TL I Sbjct: 67 FIMVADLVPVTTLILLRLGHFRQATYVYLTGQWAQATYNIAINGSIEITSTAFYITLPIL 126 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + A +++AL +L A +T Sbjct: 127 ATWLLGFREAFWTAGVCLGSALILALRQGPTSVFLPTAPLRPPLLIWANLVQLTLTAAAP 186 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +++ + + Q K+ L +E + R +A+ N AKS FLA+MSHELRTPL+ IL Sbjct: 187 VAHI-LQTLQQYKEHLEQVVEQRTAELVIARDQADSANRAKSTFLANMSHELRTPLSVIL 245 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 S+++ +E I I SG+HLL LI+ +LD+++IE+G+ EL+ +A L Sbjct: 246 ASSDLLNES----DPTPDQREDIDRISHSGKHLLGLIDNVLDVAKIESGKQELAIAASDL 301 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + VR I M++ RA++K++ + P + V D +RQ+++NLL NA+KFT G Sbjct: 302 LSTVRMVIEMMRGRAEDKHLALIYYQAPDVPRYVRVDAPKLRQILINLLGNAIKFTRE-G 360 Query: 388 RVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 V + + G I D G G+ + ++ + F Q S + G GLGL Sbjct: 361 AVELRLSAKPGDEPGYAQFCFDINDTGVGMPQHDLDRIFEPFQQVGNP--SQQAGTGLGL 418 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + + GG L+ S++ G + LP Sbjct: 419 TITRRFVELMGGTLLVESEVGRGSCFVVKLPLE 451 >gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 109/464 (23%), Positives = 186/464 (40%), Gaps = 45/464 (9%) Query: 50 PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW 109 ++ L L A G W + + + L++ ++ Sbjct: 28 MLILLATLAGAATGILLLNRWSGNFWPYLIIGLLLVCLAVSDRLRRRGDL---------- 77 Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + I + TLL ++ + + L + + +S+ A + Sbjct: 78 -RMASIVVVAAITLLPVLSCAAFGFTNNIFIYLSVLGVFAAGIIVSSRAPFRAGQAAILL 136 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAEL 228 ++ L ++ L + L + ++ D + Sbjct: 137 YLLLLLGADLIGQPRPTWFEVIGHLLLLIALLFGAATLSWAAAYVVRGTISWAIDTAQKS 196 Query: 229 EVAKSLSDETRKRAEEEN----------------------------LAKSRFLASMSHEL 260 E + L ET+ E +KS F+A+MSHEL Sbjct: 197 ERREQLLRETQATLERALLERDLLNEQLYRTTLELEEARAAAEAAYRSKSNFMATMSHEL 256 Query: 261 RTPLNAILGFSEVIELETM---GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 RTPLN I+GFS + +E + I +I RSGQHLL LIN+ILDL+++EAG Sbjct: 257 RTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLGLINDILDLAKVEAG 316 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + EL+++ ++L ++ E + Q ++ I++ ++ L +V+ADE +RQV+LNL+S Sbjct: 317 KLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFADEVRVRQVLLNLVS 376 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA KFT G + V + ++D G GIA + + F Q A G Sbjct: 377 NACKFTHA-GEIAVGA-RVDTNEIVLWVRDTGIGIAPADQERIFQQFEQIENADTRQHAG 434 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL I + ++ HGG+ + S+L +G LP TR + Sbjct: 435 TGLGLSICRWLVELHGGRMWVESELGKGSIFFFSLPRTRAGSEP 478 >gi|296501720|ref|YP_003663420.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296322772|gb|ADH05700.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 896 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842] gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842] Length = 896 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S L EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V + IP + E T Sbjct: 749 ATVDDVIPAEVVEET 763 >gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 827 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 6/253 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + + AE+ + K+ FLA+MSHE+RTP+N I+G ++++ + Sbjct: 424 ERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLSETELH- 482 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E ++Y+ I S + LL +IN+ILDL+R+E+G+ L L + + +L+ Sbjct: 483 ---EDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRP 539 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 A EK +++ L V AD+ +RQ+++NL+ NAVKFTA G V V T+ Sbjct: 540 VASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTASGRVDVRVLCASTNPY 599 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I ++D G G+ ++ + F Q A + G GLGL I++ + G + Sbjct: 600 RLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTISRLLAKQMDGDITVY 659 Query: 460 SKLREGVEVIAIL 472 S G + Sbjct: 660 SDPGRGSCFSLHI 672 >gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 917 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 166/394 (42%), Gaps = 29/394 (7%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + ++ + L + + + + ++ + +++L F +S Sbjct: 350 KRTFVINDVPDTYQLIASGLGDVKPKSIFIVPVLFEDEVIAVIELASLHEFTALEQELIS 409 Query: 167 FFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 L+ ++ + L M + + + ++ + + Sbjct: 410 QVIETFGLTINGVIRRMEIARLLKESQAMTEELQAQSEELQTQSEELQMQSEELRMINEQ 469 Query: 224 LIA----------ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L ELE AK +E + E + KS FLA+MSHELRTPLN+IL SE+ Sbjct: 470 LEERTKDAEEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEM 529 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 +E L+ + +EY IH SG+ LL LIN+ILDLS++E+G+ ++ + +++ ++ Sbjct: 530 LEENAAKTLSEDE-EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPD 588 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + A++K +++ + + DEK +Q++ NLLSNA KFT G V V+ Sbjct: 589 QIERNFSHVAEQKKVQLKINKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFT-ESGSVTVS 647 Query: 393 VGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + + I++ D G GI + + + +F Q A G G Sbjct: 648 IQRVADHRLTTAMRTIDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTG 707 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 LGL I GG + S++ +G LP Sbjct: 708 LGLSICSEFAKLLGGWISLSSEVGKGSTFTLYLP 741 >gi|167462457|ref|ZP_02327546.1| two-component hybrid sensor and regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381877|ref|ZP_08055831.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154265|gb|EFX46587.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 10/310 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P++ + SL + F + V + + Q + Sbjct: 50 IPIIFVTAASHEKEHLFTTYSLRAIDYIVKPFTPQMLKSKIAGFVNMYTIQKKLQHQTEM 109 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 L++ ++ AE N AKS F+A MSHE+RTP+N ++ + + E Sbjct: 110 LDLRTKELLMAKEAAEAANRAKSNFIAVMSHEIRTPMNGVMAMA----DLLLETELTEEQ 165 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +EY I +SG LL +IN+ILD +++E+ + EL E L ++ ECI + + ++KN Sbjct: 166 REYTETISKSGNALLTIINDILDFTKMESSKIELEEEIFHLEQLIGECIDLFLVECRKKN 225 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402 + + ++I+ + V D +RQ+++NLLSNAVKFT G+V + V S Sbjct: 226 LVLERRINQDIPQYVVGDATRLRQILINLLSNAVKFTEK-GKVSLEVKKRSEEKDGVELE 284 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI + ++ + SF Q ++ G GLGL I ++++ G + S Sbjct: 285 FKVSDTGIGIPKNKMDRLFKSFSQIDFSMTRKYGGTGLGLVICKNLIELMSGTITVTSVE 344 Query: 463 REGVEVIAIL 472 REG I + Sbjct: 345 REGTSFIFTI 354 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 139/326 (42%), Gaps = 14/326 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 P+ V F V QA + + AG ++ IL Sbjct: 317 FPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLA 376 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + E A+ + AE N AKS FLA+MSHE+RTPLN +LG ++++ Sbjct: 377 GVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTA 436 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 N+ KEY+ +S L L+++ILD+SRIEAGR ++ E ++ + + Sbjct: 437 ----PNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKEL 492 Query: 339 LQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394 L A+ K + + L + DE +RQ++ NL+ NAVKFT G++ + Sbjct: 493 FALEARRKGLILEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEK-GKIRIDASLLP 551 Query: 395 -----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +S I++ D G GI E I + F Q + QG GLGL I ++ Sbjct: 552 LLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLV 611 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNT 475 GG+ I S EG LP Sbjct: 612 KLLGGEIAIDSTPGEGTAFYISLPFK 637 >gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 11/254 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ E + +AE + AKS FLA+MSHE+RTPLN ++GF++++ + N Sbjct: 667 ITERKKAERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTAL----N 722 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET ++Y+ +++S LL++IN+ILD S+IEAG+ EL S + + + +L +AQ Sbjct: 723 ETQQQYVAIVNQSANSLLSIINDILDFSKIEAGKIELDISKCDIYEFSSQASDILSFQAQ 782 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSG 398 +K +E+ + P L +WAD ++Q++LNLLSNAVKFT G + + + Sbjct: 783 QKGLEMLLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEK-GEIELEIKPIAYPSVGM 841 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI + + + +F Q I+ G GLGL I+ ++A G + + Sbjct: 842 TTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGLGLSISNKLLALMGSKLQL 901 Query: 459 RSKLREGVEVIAIL 472 S +G L Sbjct: 902 ESTTGKGSTFFFDL 915 >gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas fluorescens] Length = 917 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 19/380 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + L ++ LLIA+ + + L + ++ + L+ Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICNAALALRISRTINLPISQIKLAVAQ 207 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231 + ++ + I Q D ++ Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ Sbjct: 268 NIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYL 323 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S +LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407 + ++ D ++Q++ NL+SNA+KFT G V + IS++D Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQD 443 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503 Query: 468 VIAI--LPNTR-VLNFIPED 484 LP TR + +P Sbjct: 504 FWISLNLPKTRDDVEDLPAA 523 >gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 1229 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 14/285 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E + ++ R+ AE N AKS FLA+MSHE+RTP+N ++G +V+ Sbjct: 532 RHFTGIMRDMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLS 591 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ KE I S LL +I +ILD S+IEAGR E+ + ISL +V Sbjct: 592 QTSLSSY----QKEMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERA 647 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA---IGGRVHV 391 L A K +E+ +DP+L V D +RQ+++NL++NA+KF++ G V V Sbjct: 648 CGTLTHMAASKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIV 707 Query: 392 TVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + DNG G+ + + T F QG + G GLGL I + Sbjct: 708 KAVPADRANGDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICR 767 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-FIPEDNHESTQ 490 ++ G + S+ +G A +P + + +D + Sbjct: 768 RLVELMKGDITVESQPGKGSTFKARIPFRMIQEGAVQQDEPDEVD 812 >gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 592 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 2/229 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + F+A++SHELRTP+ I G++E + + + E ++ IH + L + Sbjct: 360 RLEKIRRDFVANVSHELRTPVTVIKGYAETLLSGAL-ASDPERAVRFVEIIHSHSERLTS 418 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI ++L LS +E+G L S +++ VR +++L+ +A +K I I + + Sbjct: 419 LIGDLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILG 478 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV++NLL NA+K+T G + V + IS+ D G GI ++P + Sbjct: 479 DRGRLEQVLINLLDNAIKYTPEKGTITVKAA-DEEKMLKISVTDTGMGIPPKDLPRIFER 537 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A + G GLGL I + I+ HGG + S + +G L Sbjct: 538 FYRVDEARSREQGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTL 586 >gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19] Length = 757 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 10/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + ++ ++ A AKS+FLA+MSHELRTPL +I+GFS ++ + Sbjct: 366 RDITERKAVEAALEDAMVDANAAAEAKSQFLATMSHELRTPLTSIIGFSALLRE----VV 421 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E + Y I + Q LL LIN+ILD S++EAG+ EL + S ++++E +L+++ Sbjct: 422 ESEEPRRYSQRIWTASQGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQ 481 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A K + + D + + DE MRQ+++NL NAVKFT GG V + + W G Sbjct: 482 AHAKGLFLTVDTDDDMPLMLLDEVRMRQILINLAGNAVKFTGDGG-VTIALHWR-GDRLQ 539 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +++ D GPGI+ + F Q G GLGL I + ++ GG+ + S Sbjct: 540 VTVTDTGPGISPEGHKRLFKRFSQVDHTTN----GTGLGLMICKQLVELMGGRIGVESSP 595 Query: 463 REGVEVIAILPNT 475 G +P Sbjct: 596 GNGSMFWFDIPVQ 608 >gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium reilianum] Length = 1516 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 18/282 (6%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +AE + E +++L+ A+E + KS FLA+MSHE+RTP+ ++G SE++ Sbjct: 832 RRRAEHKLEESMHERSRALA--AETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLC 889 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + ++ +++ +I RS LL +IN+ILD ++E G+ +L ++A +L ++ + Sbjct: 890 DTPL----SKEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDT 945 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 ML Q+K +E + S + + D +RQV+ NLL+NA+KF A G + + V Sbjct: 946 QKMLTFATQKKGLEFRNECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAA-GAITLRVI 1004 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 T + ++D G GI++ + + F Q + G GLGL I ++++ Sbjct: 1005 ETYEDQKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVD 1064 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV------LNFIPEDNH 486 GG + S +G +P +V + P+D Sbjct: 1065 LMGGTIGLESVENKGSNAWFSIPFEKVGVHETSGDSSPDDET 1106 >gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] Length = 2450 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 38/400 (9%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ + T I + ++ + M + L Sbjct: 1601 LNIIVLPVLFEGEVKAIIELASFHPFSAIHQIFLDQLTESIGVVLNMIIANMRTEQLLLQ 1660 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L +Q+ L L +++ + ++ Sbjct: 1661 SQGLTQELQSQSRE------------LTQQQEELKRTNTELEAQALELEEKAKQLEEQNT 1708 Query: 227 ELEVAKSLSDETR----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 +E + + R ++AE+ + KS FLA+MSHELRTPLN++L ++++ Sbjct: 1709 RVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKD 1768 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ + EY I+ SG LL+LINEILDLS++EAG+ ++ I L ++ + Sbjct: 1769 GNLSGKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSF 1827 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A++KN+ ++ + + D + ++QV+ NLLSNA KFT GG V + V Sbjct: 1828 RPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADK 1886 Query: 399 RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 ++ + D G GIA+ + + +F Q + G GLGL I+ Sbjct: 1887 GVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSIS 1946 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + I GG+ + S L +G LP V PED Sbjct: 1947 REIAKLLGGEIHVESTLGKGSTFTLFLPPEYV---APEDE 1983 >gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 995 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 144/253 (56%), Gaps = 8/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + + + + ++ AE+ N+AKS FL+ MSHELRTPLN ILGF++++E M Sbjct: 243 EDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDES 299 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE +++ +I G HLL+LIN+ILD+SRIE G ++S + L+ +++ECI ++Q Sbjct: 300 LNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPL 359 Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++KNI I+ ++D V AD ++Q++LNLL NA+K+ G+V V Q Sbjct: 360 AKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFC-RLQENKQ 418 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 YI I D G G + E V F + + E+G G+GL + + ++ GG + S Sbjct: 419 YIHIVDTGVGFSVEEYTKVFVPFYRIEN---TKEEGTGIGLSLVKQLVHLMGGDINVTSN 475 Query: 462 LREGVEVIAILPN 474 G E LP Sbjct: 476 KGTGSEFCFSLPL 488 >gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae FF5] Length = 654 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum] Length = 928 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 21/298 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 224 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 283 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLL 339 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + +++L A EK +E+ I + Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + ++ D G GIAE + Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 517 >gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS278] Length = 774 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 105/269 (39%), Positives = 151/269 (56%), Gaps = 2/269 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + + Q+ + EL + + RAEE N KS+FLA+MSHELRTPLN Sbjct: 495 RLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLN 554 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ G L +E Y+EY DI SGQ+LL +IN+ILD+S+IEAGR +L Sbjct: 555 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEP 614 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + E + ++ RAQ+K++ + I+ ++ V AD + +Q+++NLLSNAVKFT Sbjct: 615 LDLAKTLAESLRVVSGRAQDKSLVLDADIEGNIP-VIADRRATKQIMVNLLSNAVKFTPE 673 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGRV + + I D G GI + + F Q + G GLGL IA Sbjct: 674 GGRVTMR-SRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIA 732 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 +S+ HGG +RS+L G V LP Sbjct: 733 RSLAQLHGGSMRLRSRLEHGTVVRVTLPR 761 >gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6] gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6] Length = 831 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 142/291 (48%), Gaps = 15/291 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + N+ + ++ LI + +E R AE + AK+ FLA+MSHE+ Sbjct: 409 GMRMIGVNLDVTRDVHLREKLIEANHALMQRNNELEEARIAAERADRAKTEFLANMSHEI 468 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N I+G ++++ +G E ++Y+ I S LL +IN+ILDLSR+EAG+ Sbjct: 469 RTPMNGIIGMADLMSESNLG----EGERQYLDTIRDSSHALLKIINDILDLSRMEAGKLA 524 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 +S L + + +L+ RA+EK + + + L + D+ +RQV++NL+ NA Sbjct: 525 ISPVDFDLQRCISGAVNLLRPRAREKGLWLSLSFEEGLPGLMRGDDGRIRQVLVNLVGNA 584 Query: 380 VKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 VKFT GG V + V +G I ++D G GI + + F Q AI + G Sbjct: 585 VKFTHSGG-VDIRVSKVAGDPYHLQIEVEDTGIGIKPEQAAHIFDRFSQADAAITRSFGG 643 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLN-FIPED 484 GLGL I+ + + GG + ++G L P V+ PE Sbjct: 644 TGLGLTISSILASRMGGGITLCEDKQDGACFTLQLRLEPAEGVVQLEEPEQ 694 >gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] Length = 929 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 28/355 (7%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201 ++ + I+ ++ F + L+ +++ + L M Sbjct: 388 VIAVVEIATMAKFSKLQQELVRQVTETFGLTVNSVLGRMEIVRLLNESRAMTEELQVQSE 447 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251 + + ++ + L + A+ ++ +K EE KS Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAESKSRELEKAKKELEESAEQLILNSNYKSE 507 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLN+IL SE++ + L +E E+ IH SG+ LL LIN+ILDL Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENSQHNLTDEEA-EFAKVIHSSGEDLLALINDILDL 566 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370 S++EAG+ ++ + +++ ++ + A +KN+ + V + DEK +Q Sbjct: 567 SKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNLAFHISKADHVVDVFYTDEKRFQQ 626 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIP 418 ++ NLLSNA KFT G V + + S I++ D G GI + + Sbjct: 627 ILKNLLSNAFKFTEQ-GSVTLDINQLTPQQLTNNMQDISKDWLEITVSDTGIGIPKDKHQ 685 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q A G GLGL I + GG ++S +G +P Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSTEGQGSSFTLTIP 740 >gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 536 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 142/252 (56%), Gaps = 11/252 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ VAK E +K + AK+ FLASMSHE+RTPLNAILG ++ + + Sbjct: 140 LREQMVVAKEREVEAKK----ASQAKTDFLASMSHEIRTPLNAILGMADTLTETNLTN-- 193 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 EY+ + SG+ L N+IN+ILDLSRIE+G+ E+ S+ D+++E I + ++A Sbjct: 194 --EQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKA 251 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-Q 401 + K I+I + ++ + D ++Q+++NL+ NA+KFT G+++V + + Sbjct: 252 KSKGIQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFT-EIGKIYVDASLSQDQKSL 310 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GI ++ ++ SF Q + G GLGL I + ++ G+ ++S+ Sbjct: 311 CLIVEDTGIGIPNEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQ 370 Query: 462 LREGVEVIAILP 473 L +G + + +P Sbjct: 371 LGKGSKFVLNIP 382 >gi|197119551|ref|YP_002139978.1| HAMP/Hpt domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088911|gb|ACH40182.1| sensor histidine kinase response regulator, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 817 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 105/500 (21%), Positives = 182/500 (36%), Gaps = 31/500 (6%) Query: 9 EKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILP--LFVLLVANIGTWF 66 + +S + +G + + F+ + R P + L VL + + Sbjct: 42 RSGMQTELSALAEIVGSNSSAAVAFNDRKSAADTLAALRAKPYILTALVVLKDHTLFASY 101 Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR-IWLLVGQI-AIGLCWTLL 124 +K+ + + + I G + Sbjct: 102 VAPGATLQLLGFVDGSGEGARVDDRKLRVELARASFPLAFGGHIFGISPIILDGQQLGTV 161 Query: 125 TL---VEPGTWTPEYLTIYKSATLLIALSISALSNFML------PYAVFLSFFPVVVALS 175 + + + + LL ALS+ L P + V Sbjct: 162 VIQSDATELKHRLKPFFLMLAGVLLGALSLGYFLAAKLQRIISEPISHLAQVMKAVSTDK 221 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + L ++ I K + + EL A Sbjct: 222 SYNLRAQKQGNDELGTLMDGFNEMLVQIQERDQKLEAHRIELEEVVQRRTHELSAANREL 281 Query: 236 DE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ AE +LAKS+FLA+MSHE+RTP+N +LG V+ + + Sbjct: 282 SQTVAELRFSKDAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAG----EQR 337 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + SG+ LL +IN+ILD S+IEAGR L + + L ++ E + M A+ K + Sbjct: 338 CFAEAVRNSGESLLCIINDILDFSKIEAGRMHLDPAPMDLHGMMAEVLEMFGAGARSKGV 397 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403 + + P + V AD +RQ+++NL+ NAVKFT+ G V + R Sbjct: 398 GMECRTAPDVPRYVEADLARLRQIVVNLVGNAVKFTSR-GEVQLHAFQLEERGEERVLRF 456 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + SF Q + + G GLGL IA+ + GG+ + S+ Sbjct: 457 EVVDTGIGIRPEALAHIFDSFTQADYSTTRSFGGTGLGLAIARQLAELMGGELGVVSEFG 516 Query: 464 EGVEVIAILPNTRVLNFIPE 483 G L + L PE Sbjct: 517 AGSTFWFTL-RLKALAEAPE 535 >gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+A++SHEL+TPL +I GF E ++ + + E +++ I + L+ LIN++ Sbjct: 346 RSDFVANVSHELKTPLTSIKGFVETLKDGAI--EDKEIAGKFLNIIEVEVERLVRLINDL 403 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS IE + +++E +++ +++ ECI +L+ +A+ KNI++ ++D L + + + Sbjct: 404 LYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKL-KMKIHKDWL 462 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+ +NL+ NA+ + G V + V + I +KD G GI + EI + F + Sbjct: 463 KQIFINLIDNAIVYNRENGEVIIEVERLDEKIA-IRVKDTGIGIPQNEIERIFERFYRVD 521 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + I+ + G+ ++S++ +G E ++ Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGSEFTIVI 565 >gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 721 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 14/332 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA--LSFFTYITYHLFKSNVKILS 216 + A + + ++ HV I+ + + ++ Sbjct: 165 VTQAANTFLISLFIVYILSRLVMRHVAAIARTVESYDFREPPRPFSLQRCKRREPDELDR 224 Query: 217 CQAEKDDLIAE------LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 A + + A E + E R AE N AK FLA+MSHELRTPLN ILG+ Sbjct: 225 VAAAFNAMGARLYCAYRDEQDTAAEREARNLAEAANRAKGEFLANMSHELRTPLNGILGY 284 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++E +E +E I SG+HLL LI + LD +RIEAG+ + + L Sbjct: 285 AQILER---DAALSERQRERASSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAG 341 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 V ++ ++A++K ++ +I V ADE+ +RQV+LNLL+NAVKFT G V Sbjct: 342 FVDVIRDIIDVKAEQKRLDFICEITGDAPVGVRADERRLRQVMLNLLANAVKFT-DSGCV 400 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + + ++D G GI ++ T+ F Q A + A G GLGL I++ + Sbjct: 401 TLHISRSESNRVRFEVRDTGIGIGHDQLNTIFEPFEQLGAAERRA-GGAGLGLAISREFV 459 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GG+ + S++ +G LP V + Sbjct: 460 RAMGGEIEVESRIGQGSTFRFELPAASVTPVL 491 >gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 856 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 27/273 (9%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A ++ AE+ N AKS FLA+MSHELRTPLNAILG+SE+++ + + Sbjct: 577 ITEHKQA-EELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDAEDLGQD 635 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + +IH +GQHLL LI++ILD S+IEAGR + ++ E + A Sbjct: 636 DWVAD-LKNIHVAGQHLLTLISDILDFSKIEAGRMNFHLEKCQINTLLWEVETTIAPLAD 694 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396 + + + ++ P L ++ D +RQ +LNLLSNA KFT G+V + V Sbjct: 695 KNHNQFTLEVAPGLDLMYTDLTKVRQSLLNLLSNACKFTEQ-GQVTLRVWKQLIPATDLP 753 Query: 397 ----------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 + ++D+G G+ E +I TV + F Q + G GL Sbjct: 754 DLPVYHSLESPEEELSEIPFIFFQVQDHGIGMNERQIATVFSPFTQADESTTRKYGGTGL 813 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GL I + GG + S+L +G LP Sbjct: 814 GLSITHKLCQMMGGDLWVESELNKGSTFTMRLP 846 >gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum SCRI1043] gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium atrosepticum SCRI1043] Length = 933 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 22/307 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + +++L A EK +E+ I + Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + + +D G GIAE + Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNP 522 Query: 477 -VLNFIP 482 + P Sbjct: 523 HAMPTEP 529 >gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 754 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 132/285 (46%), Gaps = 14/285 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L ++++ Q E + ++ AE LAK FLA+MSHE+RTPLN Sbjct: 57 RLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLN 112 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I+ E+I + ++ + S LL ++++ILD S++EA + EL + Sbjct: 113 GIIPMLELISSGQLSV----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITT 168 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ I +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+KFT Sbjct: 169 FNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTE 228 Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + + ++D G GIA + + SF Q + G GL Sbjct: 229 R-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGL 287 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 288 GLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 332 >gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573] gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573] Length = 733 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ + Sbjct: 323 QDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKD 382 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + ++++ ++ SG+H++ L+NEILD S+IE G++EL S L I+ Sbjct: 383 ELTA----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKS 438 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V V + Sbjct: 439 IYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEE 497 Query: 397 SGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + +Y I ++D+G GI + + + F Q G GLGL I + I Sbjct: 498 NIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMS 557 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ++S++ +G + ++ ++ + K Y Sbjct: 558 GTVSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596 >gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3 str. Loch Maree] gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 569 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F+A++SHEL+TPL +I GFSE ++ + + ++++ I+ L LIN+ Sbjct: 346 MREQFVANVSHELKTPLTSIKGFSETLK----YVDDKKNREKFLQIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + EL + I L +++ + +++ A++KNI I + + + ++ Sbjct: 402 ILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEK-VPLLIGNKDK 460 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+I+NL+ NA+K+T G V + G ++D G GI+E + + F + Sbjct: 461 YNQMIINLVDNAIKYTEPNGYVSIGTKQDKGN-IVFWVEDTGVGISEEHLYRIFERFYRV 519 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A AE G GLGL I + I+ + G+ ++S+ + G + I +P + Sbjct: 520 DKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIPLS 567 >gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 2624 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 19/274 (6%) Query: 230 VAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 AK E ++ AEE AKS FLA++SHELRTPLN ++G SE++ + ++ Sbjct: 1919 KAKDAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----DKD 1974 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLR 342 E I S LL +IN+ILD S++EA + +L A + D+VRE + + + + Sbjct: 1975 QLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREK 2034 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 +KN++I Q I+ ++ D + QV+ NL+ N++KFT G + + ++ Sbjct: 2035 TSKKNVKIVQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARLDKETKEH 2093 Query: 403 ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFL 457 ++D G GI ++ + F Q + G GLGL I +S++ G+ Sbjct: 2094 AMLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIR 2153 Query: 458 IRSKLREGVE--VIAILPNTRVLNFIPEDNHEST 489 + S+ G + + ++T Sbjct: 2154 LESEENVGTTAWFTVTFEKAKSDVAAGDAQSKTT 2187 >gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] Length = 628 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 19/309 (6%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P + + ++ I G+L + + L ++ Sbjct: 338 LPQGSIIYNMPLEVRYLNYIIAGGILLVIAIVYIILH----------LIYMYYRES--ER 385 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + E ++RAEE N KS FLA+MSHE+RTPLNAI+GF+ +++ E L +E Sbjct: 386 KRQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--ELTDEEK 443 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I+++ LL LIN+IL+LSRIE+GR + SL +++ E L N Sbjct: 444 DLFRNTINKNSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPS-N 502 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I ++ + + D QVI N ++NAVKFT G + V + ++ ++D Sbjct: 503 IRFLKEFQETELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGAVYKKEEKEVHVFVED 562 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++E V F + QG GLGL I Q+I G+ + S+ +G Sbjct: 563 TGKGMSEEAQKKVFERFFKVDE----FAQGTGLGLSICQTIAERLEGRITLSSQEGKGSR 618 Query: 468 VIAILPNTR 476 I+P Sbjct: 619 FTLIIPCRP 627 >gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 818 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 131/262 (50%), Gaps = 10/262 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFS 271 L D+L + + +E R+ A+ N AKS FLA MSHE+RTP+ +LG + Sbjct: 149 LEVAERTDELSSVNRQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMT 208 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ + ++ ++ + RSG+ LL +IN ILD S+IEAGR EL L + Sbjct: 209 ELLLNTDL----SKEQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQL 264 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + M A +K I + +I+P L ++ D +RQV++NLL NAVKFT G V Sbjct: 265 AADAVAMFAEDAAKKGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPE-GAVT 323 Query: 391 VTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++V ++++D G GI+ + F QG ++ G GLGL IA+ + Sbjct: 324 LSVSLAREPALVRVTVEDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLT 383 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG + S+ EG Sbjct: 384 ELMGGVMELSSEPGEGASFSFT 405 >gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] Length = 539 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 5/267 (1%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + LS A+ ELE A + + +AE+ + AKS FLA MSHELRTPLN+IL Sbjct: 272 SITLDRLSLIAKLQQTNIELEQANTSLVYAQAQAEKAHKAKSDFLAMMSHELRTPLNSIL 331 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFS+++ +T PL+ + + + I +SG+HLL +IN+IL L ++E G+ + + L Sbjct: 332 GFSQLLHQDTGTPLSAQQLAK-VDKILKSGRHLLTMINDILKLVKLENGKPFIEFQEVDL 390 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 IV+ + + AQ K +++ + S +++D ++QV+LNLLSN+VK+ Sbjct: 391 DAIVQAALREITPYAQLKKLKMNCEDLKLKSDQIIYSDPVRLQQVLLNLLSNSVKYNREH 450 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G + ++ S ++++D G GI+ E + F + +G G+GL + + Sbjct: 451 GNITISY-QVSEHTVTVNVEDTGVGISSVEQSKIFDPFYRTEE-FSMEAEGTGIGLSLVK 508 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ G+ + S+L EG LP Sbjct: 509 QIVTEMQGKIGVESQLGEGSTFWIELP 535 >gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1206 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 133/252 (52%), Gaps = 7/252 (2%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + + E++++AE ++ KS FLA+MSHE+RTP+NAI+GF+EV+ + N Sbjct: 571 TDRRMIEEALIESKEKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQN-- 628 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+++ I S + LL L+N++L+ ++++ G EL SLI +V + + A+ Sbjct: 629 --KKHLETIRNSAKSLLRLLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKR 686 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K +E L + D +RQ++ NL+ NA+KFT G++ + + G+ Sbjct: 687 KGLEFLTHYSNELEDYYRGDSLRIRQILTNLIGNAIKFTKQ-GKIELFITPHKGQ-VLFH 744 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I+D G GIAE + + F Q +++ G GLG I++ ++ GG+ + SKL Sbjct: 745 IQDTGIGIAEDRMEKIFEPFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLESKLGV 804 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 805 GTNFYFSLPLPK 816 >gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 933 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 20/261 (7%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ E K F++ +SHELRTPL +I G +++ + + P +E + + + Sbjct: 423 RREVE---RLKDEFVSVVSHELRTPLTSISGALDLLASKVV-PAGSEDAQRMLNIAANNT 478 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L+ LIN+ILD+ RIE+G+ +++ A + D++ + + +++ A++ I++ + P Sbjct: 479 DRLVRLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLA--MSPLS 536 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGP 410 + +WAD + QV NL+SNA+KF+ G V VT +KD G Sbjct: 537 AHLWADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGR 596 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI ++ ++ FGQ + + G GLGL I +SI+ +HGG+ S L EG Sbjct: 597 GIPADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFF 656 Query: 471 ILPNTRVLNFIPEDNHESTQY 491 LP PE+ ++ ++ Sbjct: 657 TLPI------FPEEQNQEEEF 671 >gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 672 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 15/276 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + D L LE + ++ AE N AKS FLASMSHE+RTP+NAILG + Sbjct: 256 ERTEELKRKNDSLNGALEQVRR----AKQAAEVANAAKSSFLASMSHEIRTPMNAILGMA 311 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ +E Y+ +G++LL ++++ILDLS+IEAG L ++ L +I Sbjct: 312 DIL----WETELSEDQARYVDVFRTAGENLLEILDDILDLSKIEAGHLTLEKTWFPLTEI 367 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG--- 387 + ++Q +A +K + + P + + D +RQV+ NLL NA+KFT G Sbjct: 368 LDRTCGVIQTKASKKGLGLSCVAAPEVPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAM 427 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + G + SI D G G++ ++ + +F Q + G GLGL I++ Sbjct: 428 NVDIASRDDEGVVLHFSITDTGVGVSGDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKE 487 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 ++ GG+ S +G R PE Sbjct: 488 LVQMMGGRIWAESTPGKGSTFHFT---ARFDTARPE 520 >gi|300864140|ref|ZP_07109035.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337868|emb|CBN54181.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1037 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 109/493 (22%), Positives = 196/493 (39%), Gaps = 56/493 (11%) Query: 30 KMDFDREIITLH-VESLFRVSPILPLFVLLVANIGTWFTQNPIFP-----MWSLITLAVY 83 ++ D+ + + V S V + ++ + P W + ++ Sbjct: 319 QLALDKYLAPVFGVVSPRGVFGPALAMIFGLSMFFLIWGDVPHIVVVGNVGWFVSFTVLH 378 Query: 84 AANLSLGKKVMNSDIKIGEVYVWRIWL---LVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 + + + + + + GL W G +P + + Sbjct: 379 LSMWL-----QRDNPGVLAPRLSLVIFFVEAIVLFVGGLAWE-WQYFLIGLLSPMAILVI 432 Query: 141 KSATLLIALSISA---------LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD----- 186 A I L I S + + ++AL ++ Sbjct: 433 DFAIRRIRLPILRPAWWIERYQYSAAGTMQDLLMFQVTTIIALVCGGVLMGWAFRSVLNQ 492 Query: 187 ----------ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS--L 234 + L ++A T ++ QAE + E+ VA+ Sbjct: 493 GTSEQQNNLILVLVMIVAFVGVAIACWTTLPQVFAIEEARQQAELLNQDLEIRVAERTVE 552 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E ++ A+ N AKS FLA+MSHELRTPLN ILG++++++ E ++ IG I Sbjct: 553 LKEAKEIADSANRAKSEFLANMSHELRTPLNGILGYAQILQR---SKSLVELDQKGIGII 609 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 ++ G HLL LIN+ILD S+IEA + E+ + + I + +++A++K I+ + Sbjct: 610 NQCGTHLLTLINDILDFSKIEARKMEIYAADFYFPSFLEAVIEICRIKAEQKGIDFIDQT 669 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG--------RVHVTVGWTSGRGQYISI 405 + + + DEK +RQV++NLL NA+KFT G +V + + Sbjct: 670 EGVIPLGIHTDEKRLRQVLINLLGNAIKFTEQGSVKFLINSRKVESEDREVNLYRIRFQV 729 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI++ I + F Q +K +G GLGL I+++I+ G + S+L +G Sbjct: 730 EDTGVGISKDHIKNIFLPFEQSGN-MKKQSEGTGLGLAISKNIVDMMGSTLEVESELGKG 788 Query: 466 VEVIAI--LPNTR 476 LP + Sbjct: 789 SVFCFEIDLPEAK 801 >gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168] gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L I++ + + + I A+EKNI + I + Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEEEFMF 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T+ GG V ++V I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ H G + S++ +G +P R Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTKR 589 >gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] Length = 794 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 134/263 (50%), Gaps = 13/263 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + LI + + + + + +AEE + KS FLA+MSHE+RTPLNAI+GFS Sbjct: 389 LRTSKLKNKLLILIDKQKEDEIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 448 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ + + E EYI I + + LL LIN+ILD+++IEAG E +S I + + Sbjct: 449 NLLTM----AEDEEERNEYINIISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINAL 504 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +L+A E ++I + +D+ + QVI N ++NA+KFT G + Sbjct: 505 LSDIEQSSRLKAPE-GVQISFVEKMPYCIIMSDKNRLAQVITNFINNAIKFTKEGS---I 560 Query: 392 TVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 G + ++D G GI + V F + S QG GLGL I Q I+ Sbjct: 561 RFGYRHKDDKLLLYVRDTGCGIEPEKKDLVFNRFVKL----NSFAQGTGLGLAICQMIVK 616 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 GG+ + S+L +G LP Sbjct: 617 KMGGEIGVESQLGKGSTFWFTLP 639 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ E K F++ +SHELRTPL +I G ++ + +E K + S Sbjct: 808 ERKQVE---KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLST-TSEQGKRLLQIATDS 863 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ RIE+G+ ++ L D++ I ++Q A + + + + S Sbjct: 864 TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNS 923 Query: 358 LSSV-----WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 S+ WAD + Q + NL SNA+KF+ G V++ + ++++D G GI Sbjct: 924 SSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQ-VLVTVQDTGRGI 982 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++ ++ F Q + G GLGL I +SI+ HGG+ ++S L +G L Sbjct: 983 PEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTL 1042 Query: 473 P 473 P Sbjct: 1043 P 1043 >gi|289164577|ref|YP_003454715.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150] gi|288857750|emb|CBJ11594.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150] Length = 910 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 14/296 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + N I A+ + LE +K+ EE++ KS F+A+MSHE+RTP+ Sbjct: 253 ETIRDLNHHIEVATADLQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPM 312 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF+ V+ + PL +Y+ I S Q LL +IN+ILD S+I+AG+ L Sbjct: 313 NGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCI 368 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 +++ + E + + A +K I++ + ++ V D ++Q I NL++NAVKFT Sbjct: 369 PLNIRHCIDEVLALAAPNAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFT 428 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + I+I D G GI+ + + T+F Q +I G G Sbjct: 429 -DHGYVLIRTNVEQETEKDYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSG 487 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 LGL I + + G+ S+L +G A + +++ + E Q +A Sbjct: 488 LGLVICKKLCEEMKGRITFASELNKGSVFTAYIKVEKLVAY----EVERNQVHPFA 539 >gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 708 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 12/342 (3%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFFT 201 + A A P A+ + +A S A D+++A +F Sbjct: 101 ITFANEGFARLLGTSPEALLGTTREATIAESLAAETRPDGSRTADLAIAPAAGGPPRWFA 160 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + +A ++ I E A DE R RAE ++AKSRFLA++SHE R Sbjct: 161 VVESAVVGRDGRPEVLRAGRE--ITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFR 218 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN ILG ++++ + P + YI I SG+ LL LI+ ILD S+IEAGR +L Sbjct: 219 TPLNGILGMADLVLETPLSP----EQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDL 274 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 + +V + +L RAQ+K +EI + L V D +RQ++LNL NAV Sbjct: 275 ACEPFDPAALVESVVELLAPRAQDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAV 334 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG V +T +++ D GPGI E +P + F QG + +G GL Sbjct: 335 KFTEAGG-VGITAERVGED-LVLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGL 392 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GL I + ++ GG+ S+ G +LP + P Sbjct: 393 GLAITRRLVDRMGGRIETTSRPGAGSCFRVVLPLRALDGERP 434 >gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1559 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 15/279 (5%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I +L + ET + A+ + AKS FLA+MSHELRTPLNA++GFSE+++ Sbjct: 1144 ENAVEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQS--- 1200 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 GP+ ++ + + I+ +G LL LIN+ILDLS++EAG+ ++ + + ++ + Sbjct: 1201 GPMPDQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIF 1260 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWT 396 A+ + + + + P++ + D K +RQV++NLL NA KFT GG Sbjct: 1261 THTARTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGGVLLEAAFETVND 1320 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D G G++ + + F Q +G GLGL I+Q ++A GG Sbjct: 1321 HFGTLILKVSDTGIGMSPETVRQLFDPFRQ---HHTRDYEGTGLGLAISQRLVARMGGSI 1377 Query: 457 LIRSKLREGVEVIAILP------NTRVLNFIPEDNHEST 489 + S+ G +LP + V +PE +S Sbjct: 1378 EVTSEPEHGSTFRIVLPGVEYRRSQAVPASLPESEKDSP 1416 >gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae WPP163] gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae WPP163] Length = 928 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 21/298 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 224 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 283 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLL 339 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + +++L A EK +E+ I + Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + ++ D G GIAE + Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPL 517 >gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + ++ + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 384 ERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I + SG HLL+L+N+ILD S+IE + EL+ ++ D++ Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396 ++K ++ + + ++ D+ +RQ+I NL+SNAVKFT G + + T+ Sbjct: 500 ICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTAK 558 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I ++D G GI + + + F Q + G GLGL I + + G Sbjct: 559 GEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618 Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490 + S +G +LP + +P D ++ T+ Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659 >gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 1133 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 8/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + + RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 571 VTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 627 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K +I I +SG LL +IN+ILD S+I+AG+ +L ++A L++ V + +L A Sbjct: 628 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAA 686 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V +G Sbjct: 687 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQAAAGGEII 746 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I+D G GI ++ +V F Q + +G GLGL I ++ GG S Sbjct: 747 ASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINAES 806 Query: 461 KLREGVEVIAILPNT 475 + G LP Sbjct: 807 EWGRGSVFTVNLPFA 821 >gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] Length = 917 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 155/341 (45%), Gaps = 19/341 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-CQ 218 ++ L ++VA+ + + + L A+A + ++ +N+ + Sbjct: 342 RTSLLLCIATLIVAIIVGILTARWITRPILKVSQASAEIAAGKLEQNIEPTNIIEIEKLA 401 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + +L+ + + ++ + ++ + K+ FLA+ SHELRTPLN I+G +E + Sbjct: 402 NSFNSMARQLKESFAALEKQNEDLKDLDKLKNEFLANTSHELRTPLNGIIGIAESLIDGA 461 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L T + I SG+ L NL+N+ILD S++ EL + L + + + Sbjct: 462 TGELPQSTQAN-LTLIASSGRRLANLVNDILDFSKLRHNNLELRLKPLDLRAVTNVVLTL 520 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q A +K++++ I ADE ++Q++ NL+ NA+KFT I G V V+ G Sbjct: 521 SQPLAAQKDLQLINAIAADFPPAAADEDRLQQILHNLVGNAIKFTPI-GTVTVSAEVVIG 579 Query: 399 RGQY---------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 Q I++ D G GI + + SF Q + G GLGL Sbjct: 580 SEQLPITDSQLSTANYQLAITVSDTGIGIPADKFDRIFESFEQAEGSTAREYGGTGLGLA 639 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483 + + ++ HGG+ ++S+L G + LP + V P+ Sbjct: 640 VTKQLVELHGGKINVKSQLGVGSQFTFTLPASTVKAESTPQ 680 >gi|169334946|ref|ZP_02862139.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM 17244] gi|169257684|gb|EDS71650.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM 17244] Length = 794 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 9/273 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++K + +E + K + +E AE+ N AKS FL SMSH++RTP+N Sbjct: 372 RVYKIVEDGVKWAFMVLTDESEEQEKKKVLEEALITAEQANRAKSEFLTSMSHDIRTPMN 431 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + + I S +HL+ LI +LD+S+IE+G+ EL + Sbjct: 432 AIVGMVNIAYSNL---DDKKKVADCLDKITLSSEHLMELIQGVLDMSQIESGKLELCKEN 488 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++E + + +A EK +++ ++ S V D + Q+++NL++NA+KFT Sbjct: 489 FNLTSLLKEAYEIFKGQALEKGLDLTLDMNKIKHSDVNGDMLRINQILMNLINNALKFTP 548 Query: 385 IGGRVHVTVGW----TSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG V + G G Y IS+ DNG GIA I + F + + S +G G Sbjct: 549 AGGFVEIKAEEVYCEEEGYGIYNISVNDNGIGIAPEFIDKLFDPFERAERSTVSKIEGSG 608 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I +++ G + S+ +G L Sbjct: 609 LGLSIVNRLISLMNGTIDVVSEQGKGSCFTVCL 641 >gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1857 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 163/389 (41%), Gaps = 23/389 (5%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 LLV ++ + L T L + + + +++L+ F FL Sbjct: 1011 ARRLLVTEVPATATPVVSGLFRAVPRTAIVLPVLFEGQVKAVIELASLTAFTDLQISFLE 1070 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + +I + + L A L ++N ++ + D Sbjct: 1071 QLTSGIGIVLNSIEATMQTEGLLTQSQQLASELQIR-QRELQQTNEQLEQKAQQLADRND 1129 Query: 227 ELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+E ++ R+ EE LA KS FLA+MSHELRTPLN+IL + + Sbjct: 1130 EVEAKNQEIEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPD 1189 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ E E+ IH +G LLNLI++ILDLS+IE+G + IS +++ Sbjct: 1190 GNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLATTARPF 1248 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A+ + + ++ P L ++ D K ++QV+ NLLSNA KFT GG V + V +G Sbjct: 1249 RHEAENRRLSFDVEMAPELGTLVTDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGG 1307 Query: 400 G-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + D G GI + + +F Q G GLGL I++ Sbjct: 1308 WSADHPVLKNAPAVVAFEVSDTGIGIPPEKQKIIFEAFQQADAGTSRKYGGTGLGLAISR 1367 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475 + GG+ +RS G LP Sbjct: 1368 ELANLLGGEIQLRSASGVGSTFTLYLPLA 1396 >gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51] gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 585 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 4/279 (1%) Query: 200 FTYITYHLFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 L+ + + +E +L++ + ++ +E++ K+ FLA +SH Sbjct: 302 MAKQLKELYSDLEHKVELRTSELGKANEQLQIKQIQLEKVNTLLKEDSQYKADFLAMVSH 361 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL AI+ F+E++ + ++E + +I + + LL++IN ILDL+R+E GR Sbjct: 362 ELRTPLTAIIIFAEILLKKKRFEDSSEEQ--ILCEIKENSEVLLHMINNILDLARLETGR 419 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 LS + L+D++ +++ AQ +I + +++ + + D + +R++I NL N Sbjct: 420 NSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVERGVPLIQGDYEKVRRIIENLAGN 479 Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A+KFT +GG+V++ I+++D+G GI++ + F Q + G Sbjct: 480 AIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISKENQAHIFEKFIQVDSSSSRQYNG 539 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL +A+ + HGG + S L +G I +LP R Sbjct: 540 SGLGLALAKELTELHGGVISVESDLNKGSTFIVLLPIER 578 >gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] Length = 910 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 17/302 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + +S + E + + E+ + ++ R A + N KS FLA MSHELRT Sbjct: 373 LKQIAEQSRDDAEVHRVEAERSRDDAELERKEAENARAEAVKANEVKSEFLAKMSHELRT 432 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+G +E++ + + ++E Y E + + R+G+HLLNLIN+ILD+S+IEAG+ EL Sbjct: 433 PLNAIIGLTEMMHEDAI-EFDDEDYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELH 491 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 +LI + + I ++ + +K+I++ + L + D+ ++Q++LNL+SNAVKF Sbjct: 492 RENFNLIMALEDVIASIKPLSDKKSIKLEGDFE-VLGDHFNDQTRLKQILLNLMSNAVKF 550 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V ++ T I++ D+G G+ E + + F Q + QG GLGL Sbjct: 551 TDE-GVVTLSA-RTENDRLNIAVTDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGL 608 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED-----------NHESTQY 491 I++ GG + S++ +G +P + +P D ES++ Sbjct: 609 AISRKFSRMMGGDIFVTSEVGKGSTFTLSIPLNQ--EDVPADLVIEDDGTLEVAQESSEV 666 Query: 492 KC 493 K Sbjct: 667 KA 668 >gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 582 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 4/279 (1%) Query: 200 FTYITYHLFKSNVKILSCQ-AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 L+ + + +E +L++ + ++ +E++ K+ FLA +SH Sbjct: 299 MAKQLKELYSDLEHKVELRTSELGKANEQLQIKQIQLEKVNTLLKEDSQYKADFLAMVSH 358 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL AI+ F+E++ + ++E + +I + + LL++IN ILDL+R+E GR Sbjct: 359 ELRTPLTAIIIFAEILLKKKRFEDSSEEQ--ILCEIKENSEVLLHMINNILDLARLETGR 416 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 LS + L+D++ +++ AQ +I + +++ + + D + +R++I NL N Sbjct: 417 NSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVERGVPLIQGDYEKVRRIIENLAGN 476 Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A+KFT +GG+V++ I+++D+G GI++ + F Q + G Sbjct: 477 AIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISKENQAHIFEKFIQVDSSSSRQYNG 536 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL +A+ + HGG + S L +G I +LP R Sbjct: 537 SGLGLALAKELTELHGGVISVESDLNKGSTFIVLLPIER 575 >gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252] gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252] Length = 919 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 96/410 (23%), Positives = 162/410 (39%), Gaps = 11/410 (2%) Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 F WSL+ A +SL + ++ + + + W Sbjct: 501 FDPISHALFWSLLFNAGLYVGVSLFTQ--QRVEELLQARAFVDVFRLSGRPGEATWRGTA 558 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 V + + + A V + V A A Sbjct: 559 YV-----SDLQQLLRRFLGKKQADEALRPVLAQGGGTVTATAEVVQHAERLLAGAIGSAS 613 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 L + + ++++ E + AELE A +R +E Sbjct: 614 ARVLIASVVKEEPLSLREVMDILDETQQVIAYSHELERKSAELERATRELQAANERLKEL 673 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K F+++++HELRTPL +I FSE++ L +E++G I + + L LI Sbjct: 674 DRLKDEFISTITHELRTPLTSIRAFSEIMHANP--NLPEAQRQEFLGIIIKEAERLTRLI 731 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N++L L ++E+G EL+ + + +++ E + +Q Q I + + + V D Sbjct: 732 NQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITLTVSVPETPCYVLGDR 791 Query: 366 KGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + QV+LNLLSNAVKF GR+ V + + ++DNGPGIA + T+ F Sbjct: 792 DQLVQVLLNLLSNAVKFCNPEDGRIAVRL-LVEPDRVRVDVEDNGPGIAPEDQATIFDKF 850 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 Q + G GLGL IAQ I+ +H G+ + S+ G LP Sbjct: 851 RQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFSFTLPR 900 >gi|254427320|ref|ZP_05041027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196193489|gb|EDX88448.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 591 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 104/457 (22%), Positives = 182/457 (39%), Gaps = 16/457 (3%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSL 77 P D L + E + + R++ VL VA + +W Sbjct: 4 PESDPLQKNARLETRITAEALRQLLGLSRRLTWSRLAVVLPVAIVHYNAVPLFWLVLWVT 63 Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 + LA + G++ N + W+ LL+ + +G W + TP Sbjct: 64 MMLAGILFHEYTGQRFRNEGCDDARLRDWQRILLISRFYLGTVWGVAIYGFYQVDTPALQ 123 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + L++++ +++ LP + P+ +AL+ I LA M+ Sbjct: 124 IFLVTIALVLSIGNIIPAHYSLPLYHVYA-GPIFLALTLVFIGQNEPFYWVLALMMVWVF 182 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 L +S + + + E DDL A L + AE+ AKSRFLA+ S Sbjct: 183 LAGARFARMLNRSFREQIRLRFESDDLSAALARKT-------EEAEQATQAKSRFLAAAS 235 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 H+LR PL+A+ F +V+ +++ + S L L + +LD+SR++A Sbjct: 236 HDLRQPLHALSLFVDVLHE----AKSDQERARIFPRVLLSVDALRKLFDALLDVSRLDAR 291 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 E S + ++ E Q AQEK +++ P +V D + +++ NL+S Sbjct: 292 VVEPDISHFDIGALLIELAAEFQPAAQEKALKLVVHAHPQ--TVMTDRVLLARILRNLIS 349 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAV++T GG V +++ + + D G GI + + F Q A + QG Sbjct: 350 NAVRYTQAGG-VLLSL-RNRSGKLLVQVWDTGGGIDVHDQDMIFQEFHQLDNAGRDRNQG 407 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +GLGL + + I +RS G +P Sbjct: 408 LGLGLALVRRISDLLEHPLTLRSVPGRGSVFSLSIPR 444 >gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1137 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 10/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL + + ++A + AKS FLA++SHELRTPLNA++GFSE+++ + P Sbjct: 735 ITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEP--- 791 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EY+G I+ +G LLNLIN++LDLSR+EA + EL + + +VRE + + + +A Sbjct: 792 QEQQEYLGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAV 851 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGR 399 EKN+ + +++ D+ ++Q++LNL NA+KFT GG V V+ Sbjct: 852 EKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGG-VTVSAVFRLAEEAGQG 910 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLI 458 SI D G GI +I + F Q S +G GLGL I++ ++ GG+ Sbjct: 911 TLIFSITDTGIGILPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSA 970 Query: 459 RSKLREGVEVIAIL 472 S +G L Sbjct: 971 ESTPGKGSTFTVRL 984 >gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] Length = 817 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 134/267 (50%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+E+ K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 417 ITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES----ENT 472 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY + + + LL LINEILDLS+IEAG E S +A+ L + +E R Sbjct: 473 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRCP 532 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 ++E+ + +D+ + QVI NL+ NA KFT G ++ G+ Sbjct: 533 S-DVELRFDPSDEDILIDSDKNRIFQVISNLIGNAFKFTTKGS---ISYGYHREGETIVF 588 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA +I V F + + QG GLGL I ++I+ GG+ + S+L Sbjct: 589 HVTDTGTGIAPEKIGKVFERFVKANN----FAQGTGLGLAICKTIIERLGGKISVTSELE 644 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G I LP + E S + Sbjct: 645 KGTTFIFTLPAKTTQDEDKEKTENSPE 671 >gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 1165 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 6/298 (2%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL A+ ++ + + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQTQTLAEQRDAMDRKNGELNQAQQELEDRAEELQRSSKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L+ E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V M + A ++ + ++ P ++ D + + Sbjct: 555 ISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLAADRKLGFQVQVQPDAPAMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V ++V G G S++D+G GIA + ++ +F Q Sbjct: 615 QILKNLLSNAIKFTEQ-GEVSLSVSRAPGEGIAFSVRDSGIGIAPDQQQSIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPED 484 G GLGL I++ + A GG + S +G +LP R + P + Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGYISVTSAPGKGSTFTLVLPEQYVEREDDAAPIE 731 >gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1839 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 109/455 (23%), Positives = 181/455 (39%), Gaps = 23/455 (5%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99 L +S ++PL I L++ A +++ + Sbjct: 944 LATVGRTLLSELVPLVGAHQGVIYRVKGGEAGPESLRLLSAYADGARSGHPERLAVGEGL 1003 Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 IG+ +L+ + + L T L + + + +++L+ F Sbjct: 1004 IGQCARDARRMLITDVPPTATPVVSGLFTAVPRTAIVLPVLFEGQVKAVIELASLATFTD 1063 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 FL + + +I + + L A L ++N ++ Sbjct: 1064 LQISFLEQLTTGIGIVLNSIEATMQTEGLLKQSQELA-GELQTRQRELQQTNEQLEQKAQ 1122 Query: 220 EKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHELRTPLNAILGFSE 272 + D E+E ++ R+ EE LA KS FLA+MSHELRTPLN+IL + Sbjct: 1123 QLADRNDEVEAKNQEIEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQ 1182 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + G L+ E E+ IH +G LLNLI++ILDLS+IE+G + IS +++ Sbjct: 1183 QLSENPDGNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLL 1241 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + A+ + + ++ P L ++ D K ++QV+ NLLSNA KFT GG V + Sbjct: 1242 AATARPFRHEAENRRLAFDVEVAPELGTLITDSKRLQQVLKNLLSNAFKFTEQGG-VRLR 1300 Query: 393 VGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 V +G + D G GI + + +F Q G G Sbjct: 1301 VAPAAGGWSADHPILRQAPMVVAFEVSDTGIGIPPEKQKIIFEAFQQADAGTSRKYGGTG 1360 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 LGL I++ + GG+ +RS G LP Sbjct: 1361 LGLAISRELANLLGGEIQLRSASGVGSTFTLYLPL 1395 >gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae Length = 929 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 146 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 205 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 206 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 265 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 266 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 322 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 323 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 378 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 379 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 438 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 439 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 498 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 499 QMGGEIGVDSTPGEGSEFWISLKLPKAR 526 >gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 731 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 145/333 (43%), Gaps = 22/333 (6%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 +V + + + + SF + L + + + Sbjct: 388 RSVLTLPLLISGEAVGSITLDSRLPGAYTQDHVTMLSSFIEPLASALRNAQLHAEVVRYS 447 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L +EV + + K+ FL +MSHELRTPLNAILGFS+++ +T G Sbjct: 448 HE-LERLVEVRTRELQIANGHLADASRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFG 506 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 PL Y I SG+HLL LIN++LDLS++EAG+ L L + + + +Q Sbjct: 507 PLT-AKQARYANHIQTSGRHLLALINDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQ 565 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------ 394 A K + I ID + ++ AD +Q+I NLLSNAVKFT GG + V+ Sbjct: 566 PVADAKRLTIVPDIDTAPITLTADPVRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRES 625 Query: 395 -------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 SG I++ D G GIA ++ + T F Q I QG GLG Sbjct: 626 GVEAPPHPIPTTLHHSGDFVEIAVTDTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLG 685 Query: 442 LPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 L + + ++ HGG + S +G LP Sbjct: 686 LALTKQLVELHGGTITVTSAGPGQGSRCTVRLP 718 >gi|197105542|ref|YP_002130919.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478962|gb|ACG78490.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 1952 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 96/401 (23%), Positives = 168/401 (41%), Gaps = 25/401 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L G + + I + ++ ++ M + Sbjct: 1115 AHIIVLPALFEGEVKAVIELATFGEFNETQMAFLDQLMESIGIVLNTIAANMRTEGLLKQ 1174 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L Q + + A L + L ++N ++ Sbjct: 1175 SQLLTSELQAQQEELKKTNDRLEQQAASLRQSEELLRTKQEELQQTNAELQEKAHLLSIQ 1234 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++E ++ + EE + KS FLA+MSHELRTPLN++L S+++ Sbjct: 1235 NQQVEAKNREVEQAKLALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADN 1294 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L+++ E+ +IH +G LL LIN+ILDLS+IE+G L ++ + + Sbjct: 1295 AQGNLSDKQV-EFARNIHDAGADLLGLINDILDLSKIESGTVTLDIGEMAFAGLKDQVDR 1353 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 A +K +E ++D +L ++ D+K ++Q+I NLLSNA KFT G V + + Sbjct: 1354 TFAQIAADKKLEFQVELDGALPRSMYTDDKRLQQIIKNLLSNAFKFTEK-GHVKLKIARA 1412 Query: 396 ------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+G+ S++D G GI E + + +F Q G GLGL Sbjct: 1413 HGGWSSTNDHLNTAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLS 1472 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I++ I GG+ + SK +G LP P Sbjct: 1473 ISREITRLLGGELKVESKPGKGSTFTLYLPLNFSPAQAPSA 1513 >gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 933 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 140/277 (50%), Gaps = 20/277 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + A+ ++ AE N AK+ FL +MSHELRTPLNAILGF++++ G Sbjct: 430 ISDRKQAEEELVRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLL---NYGDNLT 486 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + I RSG+HLL+LIN+ILDLS+IEAGR +S+ L ++ E + L+A Sbjct: 487 EHQHNNLNIIQRSGEHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKAS 546 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------S 397 +KN+ + P L + D +RQ+++NL+ NA+KFT GRV +T Sbjct: 547 QKNLYLDCVYSPDLPRYIRGDRLKLRQIMINLIGNAIKFTEQ-GRVVITADHKFISSSPP 605 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I++ D+G G+ EI + F Q I S +G GLGL I Q + G + Sbjct: 606 ICCLQIAVTDSGVGMTPEEIAQLYEPFFQAQAGIDSQ-EGTGLGLTICQKYLQLMGAEIE 664 Query: 458 IRSKLREGVEVIAIL--------PNTRVLNFIPEDNH 486 + S++ G L P + L P+ Sbjct: 665 VISEVGHGTTFKFKLKVVVSEYNPRAKNLKPSPKPQQ 701 >gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 793 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 141/274 (51%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE E K AE+ N AKS FLA MSH++RTP+NAI+G + + + Sbjct: 251 TEQRELQKKLEKQSKQLKEALKSAEQANQAKSNFLARMSHDIRTPMNAIMGMATIAKAHV 310 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +E + + I+ + + LL+LINE+LD+S+IE+GR LSE ++ +++++ ++M Sbjct: 311 ---DEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVM 367 Query: 339 LQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + K + + +V D + ++QV++N+LSNA+K+T GR+ + + Sbjct: 368 MQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKD 427 Query: 398 G----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +DNG G+ + + F + S QG GLG+ I+ I+ G Sbjct: 428 PHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMG 487 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S+ +G +P + P+D E Sbjct: 488 GDIKVESEYGKGSRFTIDMPLV-CRDQKPDDKIE 520 >gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341] gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341] Length = 733 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 321 QYQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 380 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL S L I+ Sbjct: 381 KDELTT----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSI 436 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ++ NLLSNAVKFT G V V + Sbjct: 437 KSIYSSLCYEKGLKFQLHSEISDTRWYYGDKARLRQIVFNLLSNAVKFTEK-GFVSVGLM 495 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G I ++D+G GIA+ + + F Q G GLGL I + I Sbjct: 496 EEKTHDGNYLTIKVQDSGIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAEL 555 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ++ S++ G + ++ + T+ K Y Sbjct: 556 MNGSVVVHSEVGRGTCFEVK--VKLSITEPIKEEFKPTKAKTY 596 >gi|229143715|ref|ZP_04272137.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24] gi|228639771|gb|EEK96179.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24] Length = 883 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413] gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413] Length = 603 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 143/266 (53%), Gaps = 3/266 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + E N K++FLA+ SHE+RTPL++I+GF+ ++ + P Sbjct: 209 IQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDP-TR 267 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + EY+ I SG+HLL LIN+ILDLS+IEA + E+ +++ ++ + + +++ +A Sbjct: 268 ERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAA 327 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K +++ ++DP + + AD ++Q++LNLL NA+KFT G V + V + + Sbjct: 328 NKGVKLSLELDPHIKTFVADPLRLKQMLLNLLFNALKFTNQ-GTVGLKVTQRES-FIHFT 385 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + + + Q + + +G GLGL + + + H G + S++ Sbjct: 386 VWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVDH 445 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G ILP + + ++ E + Sbjct: 446 GSRFTIILPLQQNGQVLVGEDMEDEE 471 >gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18] gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18] Length = 584 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 35/355 (9%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L Q + D+ + + + + + E ++A Sbjct: 90 TAVQALRLGAQDYLFKPFDDLEMVVATVDKVMERRRLVEEHDRLVRSLADLAIENTRILA 149 Query: 227 ELEVAKSLSDE--TRKRAE--EENLAK---------------------SRFLASMSHELR 261 EL A S +E + AE + NL + S+FLA+MSHE+R Sbjct: 150 ELRCANSDLEEKVAERTAEISKANLQQKAIIAELREAKEAAEAANRAKSQFLANMSHEIR 209 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N +LG +E++ + + + Y +HRSG+ LL +I++IL++S+IEAG+ E+ Sbjct: 210 TPMNGVLGMAELLLHTEL----DGKQRSYAEMLHRSGESLLGIISDILNISKIEAGKLEI 265 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L + R + + + + K + I +I P + D +RQV++N+++N + Sbjct: 266 ERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRLRQVLINIINNGL 325 Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G R+ VT+ SG G Y IKD G GI I + F Q + G Sbjct: 326 KFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQVDGSTTRKYGG 385 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP--EDNHESTQ 490 GLGL IA+ ++ GG+ + S+ +G I+ P E+ E+ Q Sbjct: 386 TGLGLAIAKQLVELMGGEIEVESEPGQGSTFTFIVYLNEAPARAPEREEAVEAPQ 440 >gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1044 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 19/326 (5%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 +++ S + S ++LAG +++ I ++L C + +L+ Sbjct: 535 FLQGLLLIASGETSFSFEREHVTLAGQNLKTQLYWSVIP-GYEVDYSRVLVCIVDITELV 593 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E + +++AE N AKS FLA+MSHELRTP N I+G +V++ + ++ Sbjct: 594 NIQE----ELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQNTDL----DD 645 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E++ +S + L+++IL+LS IEAG+ + + SL +++ + + Sbjct: 646 EQQEFVNLSIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSGLFSAEGHQ 705 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWTSGRGQY 402 K + + +D ++ V D ++QV+ L+ NA+KFT G +V +T + T G Sbjct: 706 KGLALEFLMDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLSATKGGDVR 765 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G GI E + + F Q + QG GLGL + + ++ G + S Sbjct: 766 VQFSVFDTGIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLMNGNISVES 825 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486 ++ G V +LP +P +H Sbjct: 826 EVDRGTTVHVVLPFA-----LPPVDH 846 >gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 785 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 138/309 (44%), Gaps = 5/309 (1%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P + + + +L + + F L ++ +S + Sbjct: 458 APYNARSVLALPIFGTAGILGILMLLHSEVDHFRQEHSELMEAATAQISFAIGNAHVYQT 517 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + AE + KS+FLA+MSHELRTPL AI+G+++V+ + + N++ Y Sbjct: 518 QQQLTRELSRAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDS-NDQIY 576 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I +G HLL LIN++LDLS+IEAG+ + + ++ + I ++ + + Sbjct: 577 LADLDRIRSAGAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNH 636 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYIS 404 + W D +R+V++NLL NA KFT G + +++ I Sbjct: 637 NSLMIDQTYHNLMFWTDISKLRRVLINLLGNAAKFT-DHGTISLSLFLDETDEPACLQIR 695 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+ ++ + +F Q + G GLGL I++++ GG + S+L Sbjct: 696 VCDTGIGMTAEQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGH 755 Query: 465 GVEVIAILP 473 G I LP Sbjct: 756 GSTFIVKLP 764 >gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1041 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 146/278 (52%), Gaps = 6/278 (2%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + +++ + I ++ + + ++ AE + AK+RFL+SMSHEL Sbjct: 622 MLLGVSVSSFHLEESAVCVAVVRDITARKMEEIELKQAKEVAERASAAKTRFLSSMSHEL 681 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAILGF++V++ + PL+ E+ +E +I ++G HLL LIN++LDL++IE R Sbjct: 682 RTPMNAILGFAQVMQSDPNEPLS-ESQRECTREIIQAGGHLLELINDVLDLAKIEENRIS 740 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLS 377 L + + + +++RE + ++ A K I ++ + + V AD ++Q+++NL + Sbjct: 741 LKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGEGVCERCDVQADRTRLKQILINLAT 800 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 N VK+ GG V ++ I ++D G GIA + + F + +G Sbjct: 801 NGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIAALKQGDIFEPFHRLVEDGT--IEG 858 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G+GL I + ++ GG + S+ +G LPN+ Sbjct: 859 TGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLPNS 896 >gi|332705094|ref|ZP_08425176.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] gi|332356044|gb|EGJ35502.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] Length = 910 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 163/392 (41%), Gaps = 25/392 (6%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN---------FMLPY 161 + Q+ L L ++ LI S + Sbjct: 303 IASQMLSAALDGRLLLRVWYV---NAQGLWIFCCSLIGAVGSWVLPETNWLRKHLLSKLI 359 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 L ++V S ++ + + + + T + ++ Q Sbjct: 360 LSILMTGGMIVGGSYLVFLTGWWIPVISPLIALCLSAILGTNTQNQWQLKQANQQLQDYS 419 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L +++ + + A+ N AKS FLA+MSHELRTPLN ILG++++++ + Sbjct: 420 RTLEVKVKERTQELETAKVAADVANQAKSEFLANMSHELRTPLNGILGYAQILKRSSNIS 479 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + IG IH+ G HLL LIN+ILDLS+IEA + EL +S I + + + ++ Sbjct: 480 KSD---LDGIGIIHQCGSHLLTLINDILDLSKIEARKLELHKSDIHFTSFLMGVVEICRI 536 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----- 395 RAQ+K I +P L ++ DEK +RQV++NLL N +KFT G V V Sbjct: 537 RAQQKGISFIYHAEPQLPVGIYGDEKRLRQVLINLLGNGIKFTDT-GSVTFQVSLIGSSL 595 Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 I+D G G+ ++ + F Q K +G GLGL I+ +++ G Sbjct: 596 NGDPSHTIRFQIEDTGVGMTPEQLKKIFLPFEQVGD-TKKQSEGTGLGLAISMKLISLMG 654 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + + S L EG L ++ Sbjct: 655 SEIKVESTLGEGSRFWLDLELATTTESPQQET 686 >gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1479 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 12/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + +++AE + AKS FLA+MSHE+RTPLN +LG +E++ + P Sbjct: 802 ITTRKETELVLQKAKEQAELTSKAKSDFLATMSHEIRTPLNGVLGMAELMSHTDLSP--- 858 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I SG+ LL LINEILD S+IEAG L +L + + +L ++A+ Sbjct: 859 -EQLTQLDVIRDSGEGLLELINEILDFSKIEAGHLVLESIDFNLEKAIFDIAHLLIVKAE 917 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399 +K IE+ + + + D ++Q+I NL+SNA+KFT+ G V + V + G Sbjct: 918 DKGIELLVEFEQRCPRMLVGDVYRIKQIITNLVSNAIKFTSE-GEVVIRVSGKPLPSGGV 976 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S+ D G GI E + +F Q + G GLGL I + G + Sbjct: 977 DLRLSVSDTGIGIQESVQRNLFKAFTQADSSTTRQYGGTGLGLAITSQLTNLMDGTIEVE 1036 Query: 460 SKLREGVEVIAI--LPNTRVLNFIPEDNHE 487 S+L +G LP + + + ++ + Sbjct: 1037 SQLGKGSCFSVSMVLPKSHLSESVEKEASQ 1066 >gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1049 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 667 ITPRKRLEQDLRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAET----DEE 722 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYI I + LL LI +ILDLS+IEAG E + S L +++ E +++++ Sbjct: 723 QEKREYISIIENNNALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTA 782 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 E +E+ + +D + Q+++NLL+NA KFTA G + G+ + Sbjct: 783 E-GVELIFEPGLDACLFHSDRNRLSQLLINLLTNAAKFTAKGS---IRFGYRAEGSRLRF 838 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + F + S +QG GLGLPI +SI+ + GG+ ++S+ Sbjct: 839 YVSDTGCGIPPEGQRRIFDRFVKL----NSFKQGTGLGLPICKSIVEHLGGEIGVKSEEG 894 Query: 464 EGVEVIAILP 473 G LP Sbjct: 895 RGTTFWFTLP 904 >gi|254442776|ref|ZP_05056252.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257084|gb|EDY81392.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1251 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 17/353 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL-SFFTYITY 205 + L+I L + A V++AL + + L + + + Sbjct: 771 VHLNIEVLPPYWKTGAFRAILVIVIIALLVGTYLYLTRQQRLRRIKLEGLVKDRTSELEQ 830 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + +A +++L ++++ ++ + +AEE + KS FLA+MSHE+RTP+N Sbjct: 831 ANQQLAKQSQELEAHQENLEEQVQLRTRELEKAKLQAEESDQLKSSFLANMSHEIRTPMN 890 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ P E EY I + L +LI++ILDLS IEAG+ ++ + Sbjct: 891 AIIGFSNLLCQRDNDPDEEE---EYSNIIQSNCTSLSHLIDDILDLSIIEAGQLQVKQED 947 Query: 326 ISLIDIVRECIIMLQLRAQEKN-----IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L ++RE + + + ++++ + + + + S + D +RQ++ NL+SNA+ Sbjct: 948 FDLNSLMRELDNVFRAQLKQESREHLALRVEEHLGERSSYILCDRDRLRQILTNLISNAL 1007 Query: 381 KFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT+ G +V+ +T + ++D G GI + ++ F + K +G Sbjct: 1008 KFTSTG---YVSARYTIDPAAGKIRFEVEDTGIGIEAKHLDSIWVQFRKIEDHTKQLFRG 1064 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHES 488 GLGL I ++++ GG ++S EG +P +R + P++ + Sbjct: 1065 TGLGLAITKTLVQLLGGSITVQSTPNEGSCFKFEIPYVPSRKKSTEPKNTASN 1117 >gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 524 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 12/268 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ + + RAE +KS FLA+MSHELRTPL AI+GF+E++ E Sbjct: 120 ITERDLIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLAREG---SLA 176 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ I + + L +++N++LD S++E G EL L +V + + +L +A+ Sbjct: 177 PQERHWLARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAE 236 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K + + +D L + D +RQ++LNL+ NAVKFT GG V + V G G Sbjct: 237 RKGVGLAIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGG-VTIRVSEDVGAGGPP 295 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +I D G GI + + V F Q ++ G GLGL I + ++ GG+ + Sbjct: 296 QVRFAISDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVE 355 Query: 460 SKLREGVEVIAIL---PNTRVLNFIPED 484 S++ G + P V ED Sbjct: 356 SRVGSGSTFWFSVALAPAAHVEQPGAED 383 >gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061] gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061] Length = 773 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 146/344 (42%), Gaps = 25/344 (7%) Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 L++ L +AL +L V +V A I + M Sbjct: 170 IILLILCLGGTALFAHVLVRKVTQPLSYMVKA--VDRIRQGQLNSRVTGAM----PGELA 223 Query: 202 YITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENLAKS 250 + + + + E I +LE+ +KRA+E K+ Sbjct: 224 ALQNGINTVAESLSKYKDEMQLHIDQATSDLQITMEQLEIQNVELTIAKKRAQEAVRIKT 283 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN ++GF+ + + EY+ I RS +LL +IN+ILD Sbjct: 284 EFLANMSHELRTPLNGVIGFTRQMLKTPITS----QQMEYLYVIDRSANNLLKIINDILD 339 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 SR+E+ + L + L D V E I +L A KN+ + ID L ++ D ++ Sbjct: 340 FSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVKNLPLHHHIDDKLPNLMIGDPIRLQ 399 Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQ 426 Q++ NL+ NA+KFT GG + + + I ++ D G GI P + +F Q Sbjct: 400 QILTNLIGNAIKFTDKGGVTLDIKLRQQQHHLIQIDFTVTDTGIGIKPEHRPILFQAFNQ 459 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 +I G GLGL I + ++ G+ S++ +G Sbjct: 460 ADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEVSKGTVFYF 503 >gi|30019163|ref|NP_830794.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|29894706|gb|AAP07995.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 896 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 593 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 8/257 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E + +AE KS FLA+MSHE+RTPLN I+GF+ ++ + E + I Sbjct: 206 LVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILSDLKLSTEAKEQVR----YI 261 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 G+ L +IN+ILD S+I AG+ + +S ++ + V I + + I++ I Sbjct: 262 KECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKIDI 321 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQYISIKDNGP 410 + + + D ++QV+ NL+ NAVKFT G V V V S +KD G Sbjct: 322 ESDIPDILSGDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKVVQKSDSYFKLQFKVKDTGI 381 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + SF Q ++ G GLGL I++ ++ GG+ + S+ G E Sbjct: 382 GIRQEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEGVGSEFSF 441 Query: 471 ILPNTRVLNFIPEDNHE 487 + +P ++ + Sbjct: 442 TVMTYTSEEEVPTESKK 458 >gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 587 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 133/281 (47%), Gaps = 16/281 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L +++ A++ + R++AEE + KS FLA++SHE+RTPLN Sbjct: 297 LTDVELELAKEFADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNG 356 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++GF ++I + E ++ + H HLLN+IN+ILD+++IEAG+ EL S + Sbjct: 357 MIGFLKLILEGM--ADDPEEQHQFTSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPV 414 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384 L ++ + L+ +A+ +N+ + P V + + + QV+LNL +NA+KFT Sbjct: 415 KLNELFEDVENFLRPQAESRNLSFRMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQ 474 Query: 385 IGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 GG + V+ + + D G G++ + + F Q + Sbjct: 475 EGG-ITVSADLVLKQVEFQKQQFPGMVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQ 533 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 G GLGL I+Q ++ GG+ S G V +P Sbjct: 534 YGGTGLGLAISQKLIEAMGGEVHFYSLGEGLGSTVTFTVPL 574 >gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 837 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 54 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 113 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 114 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 173 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 174 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 230 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 231 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 286 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 287 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 346 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 347 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 406 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 407 QMGGEIGVDSTPGEGSEFWISLKLPKAR 434 >gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] Length = 1392 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 31/379 (8%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + I +L + +++ S F + F++ + ++ I++ Sbjct: 820 GLSSSVPAQIVVVPILFETQVLGVVELASFSQFGEVHHDFMTQLVETIGVTMNTIIANSR 879 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------E 237 + L + L + ++ AE +D A L + + Sbjct: 880 TEDLLTESQRLTTELQER-SDELQRQQEELRRSNAELEDKAALLAKQNRAIEIQNFQIEQ 938 Query: 238 TRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 R+ EE + KS FLA+MSHELRTPLN++L ++++ G L + E+ Sbjct: 939 ARRTLEERAEQLAVSSRYKSEFLANMSHELRTPLNSLLVLAKLLTENAEGNLTVQQV-EF 997 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 IH +G LL LIN+ILDLS++EAGR ++ ISL +V AQ+K + Sbjct: 998 ARTIHGAGSALLQLINDILDLSKVEAGRMDIHPQQISLPKLVDYFEATFAPLAQDKGLSF 1057 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-------------GWT 396 ++D S+ + DE+ ++QV+ NLLSNA+KFT G V + V Sbjct: 1058 AVEVDSSVPQELRTDEQRLQQVLRNLLSNAIKFTPK-GEVRLRVIHAQRAVAFVDDTLRG 1116 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D G GIA ++ + +F Q G GLGL I + I GG+ Sbjct: 1117 ADGILAFEVVDTGIGIAADKLEVIFEAFRQADGTTSRKYGGTGLGLSICREIARLLGGEI 1176 Query: 457 LIRSKLREGVEVIAILPNT 475 + S++ +G LP + Sbjct: 1177 HVVSEVGQGSTFTLYLPPS 1195 >gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9] gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9] Length = 693 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + RK+AE N AKS FLA MSHE+RTPLNA+LG + + + + Sbjct: 307 ITNRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----D 362 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E++ + +S Q LL +IN+ILDLSRIE+G++EL + I + D V + L +A+ Sbjct: 363 KKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNTDICIADSVSLVVNQLNEQAK 422 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 KNI + +ID S+ S+ D+ + QV+ NL+ NA+KFT + G V V+V I Sbjct: 423 RKNITLTTQIDESVPGSMLGDKNRITQVMFNLIGNAIKFTNV-GSVRVSVKAV-NNHIEI 480 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA T+ F Q +I G GLGL I+ ++ G + S L Sbjct: 481 AVTDTGIGIAPYAQNTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSMLN 540 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G +P T V+ ++ E Sbjct: 541 VGSCFTVSIPITSVIGTTEKELPEQ 565 >gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 833 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 9/315 (2%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 HV + + F+ I + + I++ + + + Sbjct: 263 GHVEGMEMLLKRVGGEEFWALIASQ--RVEFEGRPAMINGLADISDRKRMEGELHKAIWA 320 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 +E+ AKS F+A+MSHELRTPLNAI+G+SE++ + + + I +G+HL Sbjct: 321 SEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMAD-LRKIQDAGKHL 379 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L LI+ ILDLS+IEAG+ L L ++ + A++ + + ++ Sbjct: 380 LGLIDNILDLSKIEAGKMTLYLETFELRPMIDSVAATVTPLAKKTGNALVANCADEIGTI 439 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIP 418 +D +RQ + NLLSNA KFT G + +T +G ++D G G+ + Sbjct: 440 HSDLTKVRQTLFNLLSNACKFT-RNGTITLTALRDTNAAGEWIEFQVRDTGIGMTPDQQA 498 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 V +F Q + G GLGL I +S GG + S+ +G + LP V Sbjct: 499 KVFEAFTQADDSTTRVYGGTGLGLAITKSFCRLMGGDVTLTSEAGKGTAFVVRLPA--VT 556 Query: 479 NFIPEDNHESTQYKC 493 + + + Sbjct: 557 RAASDTTVSAADKRS 571 >gi|323496614|ref|ZP_08101667.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318360|gb|EGA71318.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 810 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 7/258 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + Q E LI + + A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 320 NSQDEIKHLIDTFNQKTVFLEAEKVTAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 379 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E ++++ ++ SG H++ L+NEILD S+IE G EL L I+ Sbjct: 380 KTPL----SEEQRKHLNTLYESGDHMMTLLNEILDFSKIEQGHLELENHPFPLESIIGSI 435 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTV 393 + EK ++ + P+ +D+ +RQ++ NLL+NAVKFT+ G V+++ Sbjct: 436 NSVYYTLCAEKGLQFKVISEVPAERWYRSDKARLRQILFNLLNNAVKFTSRGYVEVYISE 495 Query: 394 GWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 T+ +I I+D G GIA+ + F Q + G GLGL I + + Sbjct: 496 KQTADAEYLHIRIRDTGIGIAKEAQEKIFKPFEQAETSTTRRFGGTGLGLAIVKQLCELM 555 Query: 453 GGQFLIRSKLREGVEVIA 470 G + S+L G Sbjct: 556 DGDVHLTSELGIGSCFEV 573 >gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1823 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 28/281 (9%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + + + + E E ++ R+ AE N AKS FLA+MSHE+RT Sbjct: 996 VAAQVGITLAQAHLLETEVKRQEQLAEQ-NEALEQARQAAEVANRAKSEFLATMSHEIRT 1054 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NA++G + ++ + P ++++ I SG LL +IN+ILD S+IE+G+ +L Sbjct: 1055 PMNAVIGMTGLLLDMDLTP----EQRDFVETIRTSGDALLTIINDILDFSKIESGKMDLE 1110 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + L + E + +L +A EK +E+ ID S+ V D +RQ+++NLL NAVK Sbjct: 1111 QHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVK 1170 Query: 382 FTAIGGRVHVTVGWTSGRGQY---------------------ISIKDNGPGIAEGEIPTV 420 FT G + V+V ++ I++KD G GI + + Sbjct: 1171 FTEA-GEIVVSVTARKISERHGEELYKLPLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRL 1229 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +F Q + G GLGL I+Q + GG+ + SK Sbjct: 1230 FKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVSK 1270 >gi|315125164|ref|YP_004067167.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013677|gb|ADT67015.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 908 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 10/312 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L+ + A T + + L + +L + L Sbjct: 455 LTTITINFAGQTWLVDLTIKDEFLPHQTNNMTLFLLILQVIVSSLILLILLLFNNQHLAL 514 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + +++++ N AKSRFLA+MSHE+RTPLNA++GFS + + E + Sbjct: 515 SRLVAERTRSLVKAKQQSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKSE----DSA 570 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET Y+ I+ + + LL+LIN++LD+S+IE+ + L + L ++ M + A+ Sbjct: 571 ETLTGYLNKINLASKSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAE 630 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 +K I P+ D + Q++LNL SNA+KFT G V V+ R Sbjct: 631 QKGINWKVDNQLPTDIWFEGDVMRIEQILLNLCSNAIKFTYE-GEVSVSAYSKEITDRRR 689 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++IKD+G GIA E + +F Q + G GLGL IA+ + G ++ Sbjct: 690 QITLTIKDSGIGIAPSEQSKLFDAFTQADSSTSRKFGGTGLGLAIAKELSLLMSGDISVQ 749 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 750 SEPGKGSTFTLS 761 >gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii] Length = 909 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 18/401 (4%) Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 Y + + + ++ E W+ V G+ + G + + + Sbjct: 125 YLLPVFGRHRNLAGELIPDEADRLLGWVEVELSHNGM-------LLRGYRSLFASLLLIA 177 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 L+ +++ + + + PV + L LA+ ++ Sbjct: 178 IGLICTAALAVRISRTINSPIGQIKQPVAQLKDGNLETCLAPLGSQELDQLASGINRMAE 237 Query: 203 ITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + E + +E+ D RK A E + KS FLA+MSHE+R Sbjct: 238 TLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIR 297 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN ILGF+ +++ + P + + Y+G I +S +LL +INEILD S+IEAG+ L Sbjct: 298 TPLNGILGFTHLLQKSELSPRHVD----YLGTIEKSADNLLGIINEILDFSKIEAGKLVL 353 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAV 380 +L D++++ + +L A K +E+ + +V D ++Q++ NL+SNA+ Sbjct: 354 DSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQILTNLISNAI 413 Query: 381 KFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G V V IS++D G G++ ++ + +F + ++ G Sbjct: 414 KFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFTEADNSLSRQPGG 473 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR 476 GLGL I++ ++ GG+ + S EG E LP TR Sbjct: 474 TGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTR 514 >gi|229042838|ref|ZP_04190574.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676] gi|228726498|gb|EEL77719.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676] Length = 883 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 632 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 163/384 (42%), Gaps = 23/384 (5%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 L P + + + + S +L AV L+ F + ++ + Sbjct: 131 FLLSNSQAAAPAEDYLGRVLVGMSGEAFSTRQQEILLKAVILALFALGFTYLLARRLASN 190 Query: 184 VLD--------ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + L + I + A + E + A + Sbjct: 191 LSRPISDMSKAVKAIQQGDYTRPLPVVDDGELGSLALHINNLAAGLEQASREQQSAIAQL 250 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R+ AE N AK+ FLA MSHELRTP+N +LG +++E M E EY Sbjct: 251 IQAREEAERANRAKTDFLAMMSHELRTPMNGVLGMLQLLETTRM----TEEQAEYAALAS 306 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S +HLL +IN+ILD SRIE EL +L ++V C Q A ++ + + I Sbjct: 307 ESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSNCAQAFQHNAAQRGLHLQLTIP 366 Query: 356 PSLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNG 409 L + D +RQ+++NL+ NA+KFT G+V + W Q I +++D+G Sbjct: 367 DGLQDLPALGDPTRIRQILVNLIGNALKFT-EHGQVSIEPQWQRLDHQLIWFSCAVRDSG 425 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI+ ++ ++ T+F Q +I G GLGLPIA+++ GG S+ +G Sbjct: 426 IGISSEKLDSMFTAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLHALSEEAQGSVFT 485 Query: 470 AILPNTRVLNFI----PEDNHEST 489 +P + P+ E++ Sbjct: 486 LEIPLELHQPVMLGLKPQQTAETS 509 >gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426] gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 542 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 138/251 (54%), Gaps = 8/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ + ++ AE+ N AKS ++ MSHE+RTPLN +LGF++++E M P Sbjct: 147 ITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLE---MDPSLK 203 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E++ +I +HLLNLINE+LDL+RIE GR L+ + DI++E I +++ A Sbjct: 204 GRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLAN 263 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +KNI+I + ++ D +RQV+LNLL NA+K+ GG V + + + I Sbjct: 264 KKNIDIQARSSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEK-VVI 322 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KDNG GI + E + F + + G G+GL + I+ GG ++SKL Sbjct: 323 HVKDNGIGIPDEEQENIFEPFYRIKG---THVDGNGIGLAFVKQIIRLLGGTIEVKSKLG 379 Query: 464 EGVEVIAILPN 474 G + LP Sbjct: 380 VGSDFSFSLPA 390 >gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1118 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 8/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + + RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 560 VTELKGREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 616 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K ++ I +SG LL +IN+ILD S+I+AG+ +L ++A + + V + +L A Sbjct: 617 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAA 675 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ- 401 EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V +G Sbjct: 676 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIM 735 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I+D G GI ++ +V F Q + +G GLGL I ++ GG + S Sbjct: 736 ACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 795 Query: 461 KLREGVEVIAILP 473 + +G LP Sbjct: 796 EWGKGSVFTINLP 808 >gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 767 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 112/269 (41%), Positives = 159/269 (59%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + AEL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 498 RRLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 557 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG +L Sbjct: 558 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLKLHRE 617 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I L ++ AD + M+QV+LNLLSNAVKFT Sbjct: 618 RIDLVPLIEESLRFTAIPAAEKNIVIEQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 676 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V +++I D G GI + + F Q ++ G GLGL I Sbjct: 677 DGGRIAVRTRRV-DGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 735 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ + HGG+ IRS+ G + +P Sbjct: 736 SRSLTSLHGGRMKIRSREAVGTVISLRIP 764 >gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 1284 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 16/303 (5%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLA 248 A + A+ + ++ K + EL VA + + + AE A Sbjct: 472 AVVGVGAVGIDITDQERANRELKEMSQTLEHKVWERTRELAVANAELAKAKHEAESAAQA 531 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTP+NA++G + + + + ++Y+ I RSGQHLL ++N+I Sbjct: 532 KASFLANMSHEIRTPMNAVIGMAHLALSTQL----DPQQRDYVEKIQRSGQHLLGILNDI 587 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LDLS+IEAG+ E+ + SL ++R ++ RA K +E+ + P + S+ D Sbjct: 588 LDLSKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPDSLRGDPLR 647 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVL 421 +RQV++N +NAVKFT G + + V +G + ++D G GI IP + Sbjct: 648 IRQVLINFTTNAVKFTER-GEIVIRVARCAGEHAESRVRLHFEVRDTGIGIDADAIPRLF 706 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI---LPNTRVL 478 SF Q + G GLGL I+ ++ GG ++S+L +G LP TR Sbjct: 707 RSFEQADSSTTRRYGGSGLGLAISHRLVTLTGGTIGVQSELGKGSTFWFELSLLPGTRRA 766 Query: 479 NFI 481 + Sbjct: 767 PAL 769 >gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 896 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSYDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 802 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 7/279 (2%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + T L + + + ++ AE N AKS FLA+MSHE Sbjct: 376 WAAGTARLTTGEDGRPLRLVGAMQNVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHE 435 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLN +LG ++ + ++ + P +E + I +SG+ LL ++N++LDLS+IEAG+ Sbjct: 436 IRTPLNGVLGMAQAMAMDELSP----AQRERLDVIRQSGESLLAILNDVLDLSKIEAGKL 491 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378 +L E+ + ++VR A+ K + + + ++ D +RQ++ NL+SN Sbjct: 492 DLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNARGLYRGDPIRVRQILWNLVSN 551 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 +KFT G V V V + ++D G GIA ++ + F Q + G Sbjct: 552 GLKFTDR-GAVEVRVRR-AQGLLAFEVRDTGIGIAPEQLANLFRKFEQADASTTRRFGGT 609 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 GLGL I + + GG+ S +G LP +V Sbjct: 610 GLGLAICRELAGLMGGEIAAESARGQGARFTVSLPLEKV 648 >gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580] gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580] Length = 593 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E KE I+ + Sbjct: 358 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEEKKEIAQVIYDESLRMGR 415 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG L+ + L + A +KNI + +D + Sbjct: 416 LVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDLHEAKFVF 475 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QV+ NL+ NA++ T GG VHV V ++ G I++KD+G GI E ++P + Sbjct: 476 DPDKMEQVLTNLIDNAIRHTNAGGTVHVDV-QSAESGLKIAVKDSGSGIPEEDLPFIFER 534 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A + G GLGL I ++I+ H G + S L EG +P + Sbjct: 535 FYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIPRNK 587 >gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241] gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241] Length = 896 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN++ K ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVDFTVKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 + + P++ +E T Sbjct: 749 ATIEDVTPDEVNEET 763 >gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1043 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 129/268 (48%), Gaps = 12/268 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMSHELRTPLNAILGFSE 272 + E I +L K L +RAEE N K FLA++SHELRTPLNA+LG+++ Sbjct: 623 EQREESVAFILDLTERKQLEAALHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQ 682 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + E + I R+ + L LI ++LD+SRI G+ L+ + L+ +V Sbjct: 683 LLRSRKF---DEEKTARALETIDRNTKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVV 739 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 I + AQ K+I+I +D + + D ++QVI NLLSNA+KFT GG V + Sbjct: 740 EAAIETVIPAAQAKSIQIIPLLDERIERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIA 799 Query: 393 VGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + I + D G GI +P V F Q + G+GLGL I + Sbjct: 800 IHRVGSELEGNFCAEIEVTDTGQGINPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRH 859 Query: 448 IMANHGGQFLIRSK-LREGVEVIAILPN 474 ++ HGG S+ +G LP Sbjct: 860 LVELHGGTVKADSQGSGKGSAFTVRLPL 887 >gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1211 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 8/283 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 F + + + A+ + ELE + L ++ +AE+ N AK+ FL+ Sbjct: 648 GVPVTFIMAFMFIDNITAQKMELDAKIAEQKQELEKQQKLLEQALVQAEKANNAKTMFLS 707 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSH++RTP+NAI+GF+ + P+ K Y+ S HLL+LIN+ILD+SRI Sbjct: 708 NMSHDIRTPMNAIIGFTNLALNNLDDPVL---VKNYLNKTVVSSTHLLSLINDILDMSRI 764 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVIL 373 E+G+ L E +L +I+ + ++ +A EK ++ + V D+ + Q+++ Sbjct: 765 ESGKIRLEEVNCNLSEIMHDLNTIVLGQASEKQQNLYMDTFNIENELVICDKLRLHQMLI 824 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNAVKFT +GG +HV V T+ +KD+G G++ + + F + Sbjct: 825 NLLSNAVKFTPVGGNIHVFVRQTASDENTGTYEFHVKDDGIGMSPEFLKVLYQPFERERT 884 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + S QG GLG+ I + I+ GG + S +G E I L Sbjct: 885 STISKTQGTGLGMSITKKIVDMMGGSIDVVSAPNQGTEFIVHL 927 >gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 922 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 97/273 (35%), Positives = 142/273 (52%), Gaps = 9/273 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E+ +L+ + A + S++ R RAE+ N K FLA++SHELRTPL AILG++ +I+ Sbjct: 498 QLEHERTELLRREQQALAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIK 557 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P E K+ + I R+ ++++IL +SRI G+ L A+ L ++ Sbjct: 558 DKALAP---ERVKQGMASIERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAA 614 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + A+ K IEI + LS V D ++QV+ NLLSNAVKFT G V V VG Sbjct: 615 VDTITPTAKAKEIEIRVEPGEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGR 674 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + + IS+ DNG GIA +P V F QG + A G+GLGL I + ++ HGG Sbjct: 675 SDSQ-VAISVTDNGKGIATSFLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGT 733 Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIPEDNHE 487 S G LP L P HE Sbjct: 734 VEAESPGEGAGSTFTVTLP----LPAAPSAGHE 762 >gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 771 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 160/294 (54%), Gaps = 12/294 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240 G + T I H K L +A DL + A L+D RK Sbjct: 471 GGYVAVGTNITRIKAHEQKLVDNDLRLRATVADLKISQVKLERQAIELADLARKYSEEKN 530 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE N AKS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 531 RAEEANQAKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 590 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR L + L + E + ++ RA K++E+ +I+ + Sbjct: 591 LLEVINDILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGIPI 650 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GGRV V T + I D+G GIA + + Sbjct: 651 V-ADRRAIKQILINLLSNAVKFTPDGGRVTVR-SRTLEDSIVMMIADSGIGIAPQSLRRL 708 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + G GLGL IA+S+ HGG +RS L G V+ LP Sbjct: 709 GQPFEQVESQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLPR 762 >gi|239908975|ref|YP_002955717.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798842|dbj|BAH77831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 939 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 12/302 (3%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 +S LA ++ +S T +L + EK+ E E + +E + Sbjct: 357 ISGDDEISELARYISLYISQITNYKLNLENLVKERTRRLQEKNV---ENEKIRQKLEEAK 413 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE+ N K+ FLA ++HE+RTP+NAI G ++ + + ++ + I S Sbjct: 414 VVAEQANKTKTDFLAKVTHEVRTPMNAIKGMNDYLLSTALTA----DQRDCLTAIKESSD 469 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-L 358 HLL ++N++LDLS+IEAG+ L +L ++ ++ A +KN+E+ +D S Sbjct: 470 HLLTIVNDLLDLSKIEAGKIVLETIDFNLKSVIESTTRLMLPLANKKNLELVTLLDDSAD 529 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG----RVHVTVGWTSGRGQYISIKDNGPGIAE 414 V D +RQ++LNL +NA+KFT +GG T G I++ D G GI Sbjct: 530 VVVRGDPARLRQILLNLTNNALKFTKLGGIAVTASATTDATAGGYEIAITVSDTGVGIER 589 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + T+ F QG + G GLGL + + ++ G + S EG LP Sbjct: 590 ARLDTIFEPFTQGDDSTSRKFGGTGLGLSVCKQLVGLMHGAITVESTPGEGSSFTVRLPL 649 Query: 475 TR 476 + Sbjct: 650 AQ 651 >gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] Length = 984 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + + G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691 >gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 487 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 145/320 (45%), Gaps = 9/320 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + ++ + +++A + S + + + + + Sbjct: 173 HLQMLIIYTAVGGIILAALLSLVFSRIISRPLVKMNKVALEMASGNYQHRV------DIR 226 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + E L L S E + E + + F+++++HE++TPL + GF+E + Sbjct: 227 SKDEIGLLSDSLNTLSSRLQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLD 286 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + + + Y+G+I L L+NEILDL R+E G ++ + L ++ + Sbjct: 287 GLV--KDEKERETYLGNILDEINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVL 344 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L ++K + + ++ L V + M +V++NL+ NAV+ T GG++ + V Sbjct: 345 GKLNQLVEQKGVNLKLNLEKRLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSK 404 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + +I I+D G GI+ ++P + F + + + G GLGL I + I+ HGGQ Sbjct: 405 ANQ-VHIRIRDTGVGISPEDLPMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQI 463 Query: 457 LIRSKLREGVEVIAILPNTR 476 + SKL EG +LP + Sbjct: 464 YVESKLNEGTSFNIVLPVNQ 483 >gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 896 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ ++ + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 731 >gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 834 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 17/283 (6%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E L++ + + R+RA + AK FLA++SHE+RTP+N ILG + +++ Sbjct: 423 REKDELGMLVSAFNQLSASLVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQ 482 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E M + EY+ I S + L+ LIN++LD S++E+ +L E+ L + + Sbjct: 483 DEPM----SARQAEYLSVIAHSSRGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYV 538 Query: 336 IIMLQLRAQ-EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 ++ + + + + + + D + QV+LNL+SNA+KFT G ++ Sbjct: 539 HDLMLPTINNKPQLAFEFRYEDTCPRYFLGDAHRIEQVMLNLVSNALKFTETGVVSFSIS 598 Query: 393 VGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + G G + + D G GIA + + F Q + G GLGL I + ++ Sbjct: 599 MRKEQGGYTGVCLRVSDTGVGIAPEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVD 658 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GG + S+L G LP + +ST K Sbjct: 659 LMGGTISVESELGRGSVFNVFLPL--------QIEKDSTDVKG 693 >gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase [Cupriavidus metallidurans CH34] gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase [Cupriavidus metallidurans CH34] Length = 1122 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 91/426 (21%), Positives = 166/426 (38%), Gaps = 16/426 (3%) Query: 63 GTWFTQNPIFPMWSLI-TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW 121 G + +W T L+ + V ++ + + L ++ Sbjct: 337 GMLWESLRRNTLWLFALTGLTCTLMLAWVRLVDRRIMRPTQTQS--LRLQESEVLGRTII 394 Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 + + + ++ ++ P + AL+ + Sbjct: 395 ESTGVGLVILDSTNAAVLMENDV------SDRITAHAKPGELARFHRAACNALADGERGN 448 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 LA +Y+T + +S + + D + ++S + Sbjct: 449 TVGRHGKFNFELAHTDETVSYLTVRVVESTYQGKPAKLCAMDDVTAARQSESTLLQAIHD 508 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A+ N AKS FLA+MSHE+RTPLN +LG E++E+ + + ++ + + +S Q L Sbjct: 509 ADAANRAKSAFLATMSHEIRTPLNGMLGSIELLEVSAL----DAAQRDQLEVMQQSAQSL 564 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SS 360 + +IN++LD S+IEAG+ L + +V + A+ +++++ IDP+L + Sbjct: 565 IQIINDVLDFSKIEAGQMALQARPCQIDSLVEDVCRRFAPDAERRSLQLLCVIDPALHAP 624 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIP 418 + D QV+ NL+SNA+KFT G V T G + + D G GIA + Sbjct: 625 ILLDPLKTEQVLGNLVSNAIKFTEQGKVVVEATTMTEGGRDWLKLRVIDTGIGIAIEDQQ 684 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F Q + G GLGL I ++ G + S+ G +P V Sbjct: 685 RLFAPFVQAEQSDSRRFGGTGLGLSICNRLVGLMNGSIRLVSEPGLGSCFDVRIPMEPVT 744 Query: 479 NFIPED 484 P D Sbjct: 745 VTQPAD 750 >gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353] gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353] Length = 961 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 136/249 (54%), Gaps = 6/249 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + + K+AE+ +LAK+ FL +MSH++RTP+N ILG+++++E E G + Sbjct: 552 QKLNEKLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGK-DIPEVL 610 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + +SG LL++IN +LD++RIE+GR E+ E+ + D+ + + +A++KNI Sbjct: 611 EHLEKLQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKKNI 670 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYI 403 + ++ V D ++++++N+LSNA+K+T GG V V V I Sbjct: 671 SLHYTMNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIVRI 730 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G G+++ + + +F + KS G GLG+ I ++ + GG + S+L Sbjct: 731 RISDTGIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVESELG 790 Query: 464 EGVEVIAIL 472 +G L Sbjct: 791 KGSTFTVTL 799 >gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 623 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 24/381 (6%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 + + ++ L ++ A ++ F F ++ Sbjct: 213 LTGFMIIFLLVIVLVRRNVVHPLTHLANSMQAFAQGDYTQRVPQFTGEFGILSREFNNMA 272 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAK 232 + L + + T + + + +D L LE Sbjct: 273 TQIFEQQEKLLSLNSQLELQIMERTAEIERRKQAEEELKQHRDHLELLVSERTQRLEQQT 332 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +K AE N +KS FLA+MSHELRTP+NAILGFS+++E + + + Sbjct: 333 IELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFSQLMERDQAITST---QQNNLR 389 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I RSG+HLL+LIN++LD+S+IE+GR L + L +++ M+ +RA+ KN+ Sbjct: 390 IIQRSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQTLKDIADMIHIRAKNKNLLFTW 449 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----------GRG 400 + DP L+ + D +RQ+++NLL NA+K+T GG + + V Sbjct: 450 EYDPKLAHYIKTDVGKLRQILINLLGNAIKYTHEGG-LSLRVHSKEMATTSASEKPYQHR 508 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y+ ++D+G GI E+ + +F Q S + K +G GLGL I + + GG + S Sbjct: 509 VYVEVEDSGAGIGPEEVDKIFDAFVQVSSS-KGISEGTGLGLSITRRYIQMMGGDIRVMS 567 Query: 461 KLREGVEVIAILPNTRVLNFI 481 +L +G +P I Sbjct: 568 ELGKGSLFKFDIPVELAEEKI 588 >gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] gi|151282574|gb|ABR90984.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 599 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 179/450 (39%), Gaps = 14/450 (3%) Query: 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSL 89 EI + L R P L LL A + N + +W + + V +++ Sbjct: 11 ADEIFIAQMAILRRNFPFALLGSLLTAGLVVIALWNVLSQRELLLWLGVNVLVLGLRVTV 70 Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 + D+ + W +L G+ W L EY L + Sbjct: 71 LRTYQPEDLP--ALRRWSRRMLWSTGLAGIVWGLPYAYWLFQAPFEYQMFMIIGLLTLGT 128 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 +P + P + L LA L +++ Sbjct: 129 GAIYAYCIYMPL-LLAFEVPYFFPPFLALGLDPDTLHHVLALAGMLYLLVTLAFALRMYR 187 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + L + E DL+A L + K ++ +++ A+ N AKS+FLA+ SH+LR P++A+ Sbjct: 188 TQRDSLQMRFENRDLLARLAIEKEAAERSKESADRSNQAKSQFLAAASHDLRQPVHALSL 247 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + V+ +++ N ++ + I R+ + L + +L++SR++AG SL Sbjct: 248 YVGVLREQSL----NAKSRQLVDHIERATAAMGRLFDGLLNISRLDAGVIRPRLRHCSLA 303 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + + RA K++ + + +V++D + +++ NL+ NA++ T GG Sbjct: 304 ALLDQLQLEYAPRAATKSLVLRLHR-GVVPAVYSDPVLLDRILRNLVDNAIRHTQSGG-- 360 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + G+ + + D G GIA + + F Q ++ +G+GLGL I + Sbjct: 361 VLIACRRRGKFVQVEVWDTGVGIAAADQEKIFMEFHQVGNPERNQSKGLGLGLAIVRRTA 420 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G + ++RS+ G LP V Sbjct: 421 DLLGHRLILRSRPGRGSVFKLSLPVHSVAE 450 >gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger] Length = 2262 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 14/292 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1752 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1811 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G + EY+ I LL LIN Sbjct: 1812 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1867 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + +D V D Sbjct: 1868 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPELVVLGD 1927 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + S+ D G GI+E + + Sbjct: 1928 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLF 1987 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG + S G V L Sbjct: 1988 RPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTVTFHL 2039 >gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 596 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 109/465 (23%), Positives = 176/465 (37%), Gaps = 46/465 (9%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 P L+ G W P+W + + Y L ++N + +Y + L+ Sbjct: 125 PAVELVYTAQGLWVLTGSNGPLWYVGVVNGYGMVLVGTLLMINQARRSRALYRAQALSLL 184 Query: 113 GQIAIGLCWTLLTLVE----PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 L W L P + + + L +++ L A + Sbjct: 185 VGAL--LPWVTSILFVTGRSPILYIDTTPVAFALSGLTFNVAMRRFRVLDLLPAARDAIV 242 Query: 169 -PVVVALSTQAIMSMHVLDISLAGM------LATALSFFTYITYHLFKSNVKILSCQAEK 221 + A+ + A + L++ Q E Sbjct: 243 DQISDAIIVVDRHDRVLDLNPAAQLFFADQTAVIGQPLTVVAPTWLYEQVRDRYEGQFEL 302 Query: 222 DDLIAELEVAKSLS-DETRKR----------------AEEENLAK--------------S 250 + +E + L R R ++ LA S Sbjct: 303 NQPTSEGMLTYDLRCTTLRDRRGMAMGRIFVLRDITLLKQAALALQKAKEAAEAANQAKS 362 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHELRTPL AILG+SEVI + N+ + + + +G+HLLNLIN+IL+ Sbjct: 363 TFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIAD-LDRVVLAGRHLLNLINDILE 421 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 L+R+EA ++ + L +IV E + AQ + ++P+L V AD +RQ Sbjct: 422 LARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPPVKADPTRLRQ 481 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V+LNL+ NA KFT G++HV I + D G GI ++ ++ F Q Sbjct: 482 VLLNLIGNACKFTEQ-GQIHVRCYSPQPGIIQIDVSDTGIGIPPEQLASLFQPFMQVDNG 540 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ + GG+ ++ S+ + G LP Sbjct: 541 TTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLPVA 585 >gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1064 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 155/276 (56%), Gaps = 14/276 (5%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L A++ E +++AE N+AKS F+A+MSHELRTPLNAILGFS+++ + Sbjct: 576 NCTLEAQVTQRTQELAEAKEKAEVANVAKSAFIANMSHELRTPLNAILGFSQIMNRSSNL 635 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P ++E + I+RSG++LL LIN ILD+S+IEAG+ L+ L+ ++ E + + Sbjct: 636 PN---EHQESVKIINRSGEYLLTLINNILDVSKIEAGKITLNSKNFYLVRLLDEIEELFK 692 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398 L++ + ++++ + + ++ + DE +R+V++NLLSNA+KFT +GG + V T Sbjct: 693 LKSINQGLQLYFEREDNIPQYIQTDELKLREVLINLLSNAMKFTQVGGIYLRVKTRSTPE 752 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + Y ++D G GI E+ + +F Q + K A++G GLGL I+Q + G Sbjct: 753 TEPSTQTLYFEVEDTGVGILSEELSQLFEAFSQT-QSGKQAQEGTGLGLAISQKFVELMG 811 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G+ ++S+ G + +V P + T Sbjct: 812 GEINVKSQAGVGTIFSFNI---QVNVVQPTEVETQT 844 >gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] Length = 940 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 154/325 (47%), Gaps = 12/325 (3%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHV-LDISLAGMLATALSFFTYITYHLFKSNVK 213 +++ Y + F + + +++ + + ++ A Y + H K + Sbjct: 307 IDYLHRYFMLALLFTACIVMVLSIVLTKRITVPLAKLARFAAQFKLGNYTSQHTLKGPHE 366 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 Q + ++ ++ ++AE + AKS FLA++SHE+RTP+N +LG S++ Sbjct: 367 FQVLQEALNQGATKIAYDTQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQL 426 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + + ++ + SG+H+++++N+ILD S+IE G+++L+++ + D+V Sbjct: 427 LLKTDL----TQEQRHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVG 482 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 A+EK + + + S +AD+ +RQ++ N+++NA+KFT G V V+ Sbjct: 483 TIESTYYSLAKEKGLGFSIQCNFDYNSWFFADKSRIRQILFNVINNAIKFTDK-GEVSVS 541 Query: 393 VGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + R I+ +D G GIAE + + F Q I+ G GLGL I Sbjct: 542 LNQDQCDDPRERRLIITTQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQ 601 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 ++ G + S +G L Sbjct: 602 LVNLMNGDIQLESTYGKGSTFTITL 626 >gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] Length = 2128 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 12/290 (4%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 ++ L + S L Q +D + + + +AEE Sbjct: 1460 NLIAGAFTKDRLDVLNILAGQAAISIDNALVYQNLEDRVNERTKQ----LTLAKLQAEEA 1515 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NA++G S ++ + K+Y+ I S + LL LI Sbjct: 1516 NQAKSMFLATMSHEIRTPMNAVIGLSHLVLKTQLNL----EQKDYLNKILESAEILLGLI 1571 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVWAD 364 N +LD S+IEA + L +L D++ + ++A+EK + + + + + D Sbjct: 1572 NSVLDFSKIEAHKLALESIPFNLNDVIENSTSICSIKAKEKGLALNIHCHNADIPLLQGD 1631 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421 ++Q+++NL +NAVKFT IG +H+ + I D G G+ + +I + Sbjct: 1632 PLRLQQILINLANNAVKFTRIGQVDIHIHLEPNEQDLAQLKFEIVDTGVGMNKKQIDNLF 1691 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +SF QG +I G GLGL I++ ++ GG+ + S++ +G Sbjct: 1692 SSFSQGDDSITRQYGGTGLGLAISKELIELMGGEIWVNSEMGKGSTFGFR 1741 >gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1208 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 10/253 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E R+ A + KS FLA+MSHE+RTP+N ILG +E+++ + N +++I + Sbjct: 546 LVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL----NPQQQDFIKTL 601 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +S HLL +IN+ILD S++EAG L + +ID V +L ++AQ K +E+ I Sbjct: 602 SQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLAIQAQTKQVELITTI 661 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409 DP L +V D +RQ++ NL+ NA+KFT G V + + + D G Sbjct: 662 DPQLGGTVTGDSMRLRQILTNLVGNAIKFTHR-GSVVIRALPMAEDEASVLVKFEVIDTG 720 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + + SF Q + G GLGL IA+ +++ G + S +G Sbjct: 721 IGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDIGLESSPGQGSTFW 780 Query: 470 AILPNTRVLNFIP 482 R+ P Sbjct: 781 FTARFQRLETPPP 793 >gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 653 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + I+ G L + L ++ + L A EL + + Sbjct: 103 GLKIRFYAGMPLITPDGHAVGVLCAADHEPRSLNENQKRALHIVARHVITTLELGIKNNE 162 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +K AE LAK FLA+MSHE+RTPLNAI+GF+E++ G ++ + +I D+ Sbjct: 163 LLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLS----GTPLDKQQQAFIQDV 218 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G++LL ++N+ILDLS+IE+G L + +L +R +L+++ +E + Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVK-TADGVEFNLFL 277 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409 D L V D+ + Q+++NL NA+KFT G V ++V S+KD G Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNE-GEVTISVKNKGETEDSYTIRFSVKDTG 336 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + ++ F QG G GLGL I + ++ H + ++S+ G E Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396 Query: 470 AI 471 Sbjct: 397 FT 398 >gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 635 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 256 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 311 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + +V E + +L+ Sbjct: 312 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 371 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +++ + D + QV+ N LSNA+K T G + + Sbjct: 372 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 428 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 429 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 484 Query: 463 REGVEVIAILPNTRVLNFI 481 +G I LPN +V + Sbjct: 485 GQGSTFILYLPNRQVQEVV 503 >gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 595 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 8/271 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +S V ++S + + + V + +++E R + + F+A++SHELRTP++ + Sbjct: 330 RSWVLLMSPLYAQSHVRGAVAVLRDMTEERR-----LDKLREDFIANVSHELRTPISMLQ 384 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I + ++ KE I+ + L+N++LDL+R+E+G L ++L Sbjct: 385 GYSEAIVDDIASSEDD--RKEIAQIIYDESLRMGRLVNDLLDLARMESGHTALHYVKVNL 442 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + + A+EKNI + I + + DE M QV NL+ NA++ T GG Sbjct: 443 DEFLEKIFRKFSGVAKEKNISLTDDISLNETEFAFDEDKMEQVFTNLIDNALRHTQSGGT 502 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 VH+ V I +KD+G GI E ++P + F + A G GLGL I ++I Sbjct: 503 VHIAVQSVKDG-LKIDVKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNI 561 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + H G + S++ +G +P + Sbjct: 562 VEAHNGSITVHSRIDKGTTFTFYIPTKPLDE 592 >gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 681 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 2/253 (0%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L ++++ E K +E + KS FLA+MSHELRTPL+AI+ SE+++ E G Sbjct: 416 NESLEEKVKLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFG 475 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 LN++ K +I +I SG HLL+LIN +LD+S+IEAG+ +L+ S+ DI E +L+ Sbjct: 476 ELNSKQLK-HITNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLK 534 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A KNIEI I+PS + D ++Q++ NL+SN++KFT GG++ + + Sbjct: 535 SLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYM 594 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + I I+DNG GI + + + F Q + + +G GLGLP+ + ++ HGG+ + S Sbjct: 595 KLI-IEDNGIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLIS 653 Query: 461 KLREGVEVIAILP 473 + G ++I +P Sbjct: 654 NIGTGTKIIITIP 666 >gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 827 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + ++ + AE N AKS FLA+MSHELRTP+ AILGF +++ +N Sbjct: 417 VTEWKQSERELKLAKIAAEAANHAKSEFLANMSHELRTPMTAILGFVDIVAENV---SSN 473 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I R+G+HL+ L+N+ILDLS+IEAGR E+ + + ++ + + I ++++R+ Sbjct: 474 PQLIDAAATIKRNGEHLMGLLNDILDLSKIEAGRLEVQKHSCNVRALTADVIQLMRVRSD 533 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 K +E+ + ++ + D +RQ+++NL+ NA+KFT G ++ V + Sbjct: 534 AKGLELSIEFQGAIPETIETDSTRLRQILINLIGNAIKFTENGRVQILVRLERRGTPMLE 593 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I+D G GI ++ + F Q ++ G GLGL I++ + GG + SK Sbjct: 594 FEIRDTGIGITPEQMTKLFRPFTQVDTSLTRKFGGTGLGLTISKRLAEILGGTITVSSKA 653 Query: 463 REGVEVIAIL 472 EG + + Sbjct: 654 GEGSSFLLRI 663 >gi|229126416|ref|ZP_04255431.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4] gi|228656996|gb|EEL12819.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4] Length = 883 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|323692858|ref|ZP_08107084.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503087|gb|EGB18923.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 939 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + + VK++ ++ + E + + A++ N AKS Sbjct: 496 GGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKQANEAKS 555 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSH++RTPLNAI G S + + + E ++ + I S HL+ LIN++LD Sbjct: 556 NFLAQMSHDIRTPLNAITGMSSIALSQ---AEDPEKVRDCLKKITLSSHHLIELINDVLD 612 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S+IE G+ EL+E+ SL +++ + +L +A K E+ S + D +R Sbjct: 613 MSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNPKSPHDHLCGDAGRIR 672 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSF 424 QV++NL++NA+K+T GGR+ + V S ++ D G G+++ + + F Sbjct: 673 QVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTGIGMSKDFLDYIFVPF 732 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A QG GLG+PIA I+ G + S+ +G L Sbjct: 733 SRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFTVTL 780 >gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1] Length = 1522 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 F T + + + I + A+++ R+ AE+ N AKS FLA+MSHE Sbjct: 722 FIQSTGTVEQDENGKALLMMGINRDITQQREAENILKTAREAAEKANKAKSAFLANMSHE 781 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTP+NAILG ++ + + +Y + + LL L+N+ILD S+IE+G+ Sbjct: 782 LRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFSKIESGKM 837 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 EL + ++R+ ++L + K +E+ IDPSL V D ++Q++ NL N Sbjct: 838 ELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897 Query: 379 AVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT +G V + V + ++D G GIA ++ + F Q + Sbjct: 898 ALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRF 957 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPN 474 G GLGL I+Q +A GG + S+L +G LP Sbjct: 958 GGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITLPL 998 >gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1156 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 18/263 (6%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A KS+FLA+MSHE+RTP+N +LG ++ + N Y Sbjct: 407 ELVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDL----NPQQLNYTRT 462 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +HLL +IN+ILD+S++EAG+ L + SL + I +L ++A+ K +E+ Sbjct: 463 IESCAKHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAIL 522 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQY 402 ++ ++ + +D +RQ++LNL+ NA+KFT G V V V + + Sbjct: 523 VESNVPRQLQSDPGRLRQILLNLVGNAIKFTDA-GEVVVRVAVSRHQPTDTLSQSSVTLR 581 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI+ + + +F Q + G GLGL I Q ++ GG+ + SK+ Sbjct: 582 FSVTDTGIGISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKV 641 Query: 463 REGVEVIAILPNTRVLNFIPEDN 485 +G +P +P Sbjct: 642 GQGSTFWFTVPVK--TQPLPPAQ 662 >gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] Length = 1068 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 4/236 (1%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE N AKS FLA+MSHE+RTP+NAILGF++++ + + ++I I SG Sbjct: 303 KEEAEAANRAKSDFLANMSHEIRTPMNAILGFADILRRDKKKLQTD--QLKHINTISTSG 360 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 QHLL+LIN+ILDLS++E+GR E+ + ++ + ++++A EK +E+ D SL Sbjct: 361 QHLLDLINDILDLSKVESGRLEVEALDCKPVQLIHHVLQFMKVKADEKGLELKFVADTSL 420 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D +RQ++ NL+ NA+KFT GG VHV+V + + I++ D G G+ + + Sbjct: 421 PEQIETDPGRVRQILTNLIGNAIKFTEQGGVTVHVSVVGDNPKQMKIAVVDTGIGMTQQQ 480 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +V +F Q +I G GLGL I+Q GG L+ S+ G +L Sbjct: 481 TDSVFEAFVQADSSITRRFGGTGLGLSISQKFAHALGGDILVTSEKGVGTTFTLVL 536 >gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens] gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] Length = 917 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 162/370 (43%), Gaps = 16/370 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV----FLSFFPVVVAL 174 L W L L G Y +++ S L+ A + V L Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASLLLIAAGLAGTALLAVRMGRTINNPLTQIKQAVAQL 208 Query: 175 STQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + + S + + + + + I + + +E+ Sbjct: 209 KDGNLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQN 268 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+G Sbjct: 269 IELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLG 324 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351 I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 325 TIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVS 384 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408 + S+ D ++Q++ NL+SNA+KFT G V + ISI+D Sbjct: 385 LVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDT 444 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 445 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 504 Query: 469 IAI--LPNTR 476 LP TR Sbjct: 505 WISLNLPKTR 514 >gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 681 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 91/253 (35%), Positives = 150/253 (59%), Gaps = 2/253 (0%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L ++++ E K +E + KS FLA+MSHELRTPL+AI+ SE+++ E G Sbjct: 416 NESLEEKVKLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFG 475 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 LN++ K ++ +I SG HLL+LIN +LD+S+IEAG+ +L+ S+ DI E +L+ Sbjct: 476 ELNSKQLK-HVTNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLK 534 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A KNIEI I+PS + D ++Q++ NL+SN++KFT GG++ + + Sbjct: 535 SLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYM 594 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + I I+DNG GI + + + F Q + + +G GLGLP+ + ++ HGG+ + S Sbjct: 595 KLI-IEDNGIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLIS 653 Query: 461 KLREGVEVIAILP 473 + G ++I +P Sbjct: 654 NIGTGTKIIITIP 666 >gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS and HAMP domains [Synechococcus sp. PCC 7002] Length = 1280 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ ++ AE+ N AKS FLA+MSHE+RTP+NA++G +E++ + +E Sbjct: 712 EAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAVIGMAELLRDTDLTA----QQQE 767 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +I I SG +LL +IN+ILD S+IE+G++EL +L + C+ ++ RA K I Sbjct: 768 FIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQTCLENCLDLMSTRAIAKPIY 827 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY-- 402 + +DP + + D +Q++LNLL NAVKFT G V + V T Q Sbjct: 828 LSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNR-GDVSLWVQKVPTATGDGDQVCL 886 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I D G GI ++ + F QG + G GLGL I++ ++ GG+ + S Sbjct: 887 RFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGGKLWVES 945 >gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 583 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 135/267 (50%), Gaps = 5/267 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++ + E DL L +E +R E+ + + F+A++SHELRTPL + G Sbjct: 320 TTRIRVTSRDEVGDLGQSLNALAQDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHG 379 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ T+ + K+Y + L LI ++LDLS+++A L +SL Sbjct: 380 YNQALQDGTIT--DPALVKKYHRVMGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLA 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +IV + +L+ R++EK + + + P + + D + Q+ L L+ NA+KFT GGR+ Sbjct: 438 EIVDNVVTLLKPRSEEKGVSLAACVAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + + +++ D G GIA ++P + F +G + A G GLGL IA+ I+ Sbjct: 498 SIDLT-VQDGEEVLTVADTGTGIAPEDLPYIWERFYKGDKS--RASSGTGLGLAIARQII 554 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476 HG + + S+ EG P + Sbjct: 555 ELHGAKVDVTSRCGEGTVFTIRFPLEK 581 >gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 637 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + +V E + +L+ Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +++ + D + QV+ N LSNA+K T G + + Sbjct: 374 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486 Query: 463 REGVEVIAILPNTRVLNFI 481 +G I LPN +V + Sbjct: 487 GQGSTFILYLPNRQVQEVV 505 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + A+ ++ AEE AKS FLA+MSHE+RTP+NAI+G S + + + Sbjct: 947 ISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTEL----D 1002 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + YI +HRS + LL +IN+ILD S+IEAG+ ++ A L D++ ++ L+A+ Sbjct: 1003 ARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVGLKAE 1062 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +E+ + P + + + D + Q+++NL +NAVKFT GG + ++V + Sbjct: 1063 EKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRVMDQGADWV 1122 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D G G++ + + F Q ++ G GLGL I+ + GG+ + Sbjct: 1123 RLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEIRVE 1182 Query: 460 SKLREGVEV 468 S G Sbjct: 1183 SAPGAGSTF 1191 >gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80] gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80] Length = 984 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691 >gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 564 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 10/268 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 AE + + LE + ++A+ N AKS FLA +SHE+RTP+N ++G SE++ Sbjct: 13 AELEAEVQRLERENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDTD 72 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + P K + I S LL LIN +LD S+IEA + L L ++ + + + Sbjct: 73 LQP----RQKHFAHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSL 128 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ + K + + +IDPSLS D +RQV++NLL NAVKFT G + + V Sbjct: 129 YRVTGKSKGLRVNAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQ-GAILLRVRKER 187 Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++D+G GIAEG + + F Q + G GLGL I ++ Sbjct: 188 AGETAELLRFEVEDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLME 247 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481 G+F RS+ +G LP Sbjct: 248 GEFGARSEYGKGSTFWFSLPLRVARQAA 275 >gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 456 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + +S F+A++SHELRTPL +I GF E + + N E ++++ I + Sbjct: 220 EMRKLEKMRSEFVANVSHELRTPLTSIRGFIETLRSGAI--ENPEAREKFLDIIDFEAER 277 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LIN+IL LS IE + I + + + + +++ A++K+I + + ++ + Sbjct: 278 LTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLT 337 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + A+ Q+++NL+ N +K+T GG V V+ G I ++DNG GI + +IP + Sbjct: 338 IIANRDRFHQMMINLIDNGIKYTQEGGFVKVST-RLEGEKIIIEVEDNGIGIPKDKIPRL 396 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + G GLGL I + I+ + G+ + S++ +G + Sbjct: 397 FERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRF 448 >gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1205 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 10/263 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A LE + R A+ N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 458 AALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + YI + S LL LIN+ILD S+IEAG+ ++ L +++ ++ L+A E Sbjct: 514 AQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLENVLDNISNLVGLKASE 573 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-- 401 + +E+ + + ++ D + Q++ NL +NAVKFT G ++ +T Sbjct: 574 QGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVKITITADNLENDDVTL 633 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G G+ + + F Q + G GLGL I++ + GG +RS+ Sbjct: 634 RFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEVRSQ 693 Query: 462 LREGVEVIAIL--PNTRVLNFIP 482 EG + ++VL P Sbjct: 694 FGEGSTFEFTINMKRSQVLETKP 716 >gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 645 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 140/284 (49%), Gaps = 14/284 (4%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + E I + ++ + + AE N AKS+FL++MSHE+RTP++ +LG +E+ Sbjct: 229 AVDLVTELRHEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTEL 288 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + EY+ DI S +LL++IN+ILDLS+IEAG+ EL + SL +R Sbjct: 289 L----GFTELTPEQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIR 344 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 M R EK+++I KI P + V D+ ++Q++LNLLSNAVKFT G++ + Sbjct: 345 TTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFT-AHGQISIQ 403 Query: 393 VGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 R IS+ D G GIA + + F Q + G GLGL I + + Sbjct: 404 ASLLESRNEHLLVQISVSDTGVGIAAEALDRIFDPFTQADASTSRKFGGTGLGLAICRQL 463 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG + S+ +G LP R E S+ ++ Sbjct: 464 AELMGGGIRVESEEGKGSRFHLRLPFKRPG----EPEKRSSDHQ 503 >gi|167647510|ref|YP_001685173.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349940|gb|ABZ72675.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 1942 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 168/411 (40%), Gaps = 27/411 (6%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 +++ + G ++ L G + I + +S ++ M + Sbjct: 1101 IIVLPALFEGELKAVIELATFGKFNETQQAFLDQLMESIGIVLSTIAANMRTEGLLEQSQ 1160 Query: 169 PVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L + + A L + L ++N ++ Sbjct: 1161 LLTSELQAQQGELKKTNDRLELQAASLRQSEELLRSKQDELQQTNAELEDKAMLLSAQNK 1220 Query: 227 ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++E + ++ + EE + KS FLA+MSHELRTPLN++L S+++ Sbjct: 1221 QVEAKNTEVEQAKAALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKMLSENAQ 1280 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+++ E+ +IH +G LL LIN+ILDLS+IE+G L ++ + + Sbjct: 1281 GNLSDKQV-EFSKNIHSAGTDLLGLINDILDLSKIESGTVTLDIGEMAFTSLRDQTQRTF 1339 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 AQ+K I+ IDP+L ++ D+K ++QVI NLLSNA KFT + G V ++V Sbjct: 1340 AQLAQDKKIDFQIDIDPALPRSMYTDDKRLQQVIKNLLSNAFKFTQV-GSVRLSVSRAES 1398 Query: 399 RGQ-------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 S++D G GI E + + +F Q G GLGL I+ Sbjct: 1399 GWASGNDHLNKAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSIS 1458 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHESTQYKCY 494 + I GG+ + S G LP + +P S + Sbjct: 1459 REITRLLGGELKVVSIPGSGSTFTLYLPLNFSPAAQPLPAPRQPSAPSSTF 1509 >gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 2478 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 107/473 (22%), Positives = 190/473 (40%), Gaps = 32/473 (6%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99 L S +S + PL P+ L + Y + + + Sbjct: 1552 LDAVSRLIMSELTPLVSAHHGAFFLVDGAEAGTPLLKLTSTYAYRERKHIANRFRFGEGL 1611 Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 +G+ + R +L+ Q+ L E L + + + +++ F Sbjct: 1612 VGQCALERKTILLTQVPEDYITISSGLGEAAPLNIIVLPVLFEGEVKAVIELASFHAFSA 1671 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVK 213 + +FL + + I++ + L T L +SN++ Sbjct: 1672 IHQIFLDQLTETIGVVLNMIIANMRTEQLLLQSQDLTQELQSQSKELTQQQEALKRSNIE 1731 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETR----KRAEEE---NLAKSRFLASMSHELRTPLNA 266 + ++ +E + + R ++AE+ + KS FLA+MSHELRTPLN+ Sbjct: 1732 LEEKATLLEEQNRRVEEKNNEVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNS 1791 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +L ++++ G L+ + EY I+ SG LL+LINEILDLS++EAG+ ++ I Sbjct: 1792 LLILAKLLSDNKDGNLSTKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDI 1850 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ + A++K + ++ P + D + ++QV+ NLLSNA KFT Sbjct: 1851 VLTELNQFIERSFLPVAEQKGLSFTVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDE 1910 Query: 386 GGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G V + V + ++ D G GIA + + +F Q + Sbjct: 1911 -GSVQLKVKLAEVGTHFDHEVLRRSRYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTA 1969 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I++ I GG+ + S+ G LP + PE+ Sbjct: 1970 RKYGGTGLGLSISREIAKLLGGEIQVTSEPGRGSTFTLYLPPEYI---SPEEE 2019 >gi|323483856|ref|ZP_08089233.1| histidine kinase [Clostridium symbiosum WAL-14163] gi|323402810|gb|EGA95131.1| histidine kinase [Clostridium symbiosum WAL-14163] Length = 939 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + + VK++ ++ + E + + A++ N AKS Sbjct: 496 GGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKQANEAKS 555 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSH++RTPLNAI G S + + + E ++ + I S HL+ LIN++LD Sbjct: 556 NFLAQMSHDIRTPLNAITGMSSIALSQ---AEDPEKVRDCLKKITLSSHHLIELINDVLD 612 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S+IE G+ EL+E+ SL +++ + +L +A K E+ S + D +R Sbjct: 613 MSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNPKSPHDHLCGDAGRIR 672 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSF 424 QV++NL++NA+K+T GGR+ + V S ++ D G G+++ + + F Sbjct: 673 QVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTGIGMSKDFLDYIFVPF 732 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A QG GLG+PIA I+ G + S+ +G L Sbjct: 733 SRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFTVTL 780 >gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8] gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8] Length = 491 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 151/337 (44%), Gaps = 10/337 (2%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +++ +++L A++ ++V ++ + A A + Sbjct: 165 SVANMVGESYILQTALWGLGLVILVTAGVGLLLFRRLTQRLRAMQDVVADFEAGAFGRRV 224 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ E L ET + + + + +A++SH+LR+P+ +I Sbjct: 225 DVTSND------EIGRLGTCFNRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASI 278 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 G+ E + ++ G L E + Y+ R+ + L L+NE+ +LS++E + E + A Sbjct: 279 QGYLETVSMKD-GDLPPEERQRYVTTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFP 337 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + ++V++ ++ + RA+E+ +++ + + V AD + + + NL+ NA+ +T GG Sbjct: 338 IAELVQDVVMQYEPRAEEQAVDLRPDLPERHARVEADIGLVERALSNLIDNAIHYTPEGG 397 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V V + +++ D GPGI E ++P + F + + G GLGL IA++ Sbjct: 398 QVRVRLD-NKQGEVCVAVADTGPGIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKT 456 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I+ HG + S + EG LP PE Sbjct: 457 ILELHGRTLEVESTVGEGTVFRFRLPVE--APSGPEA 491 >gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 931 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 130/252 (51%), Gaps = 8/252 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + +LE+ D+ R+ AE +KS FLA MSHE+RTP+N +LG ++E + Sbjct: 381 EKYAHQLEMNNLALDDARETAEAAAQSKSEFLACMSHEIRTPMNGVLGMLTLLERTAL-- 438 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +++ + ++ S ++LL LIN+ILD S+IE+G++ + SL +++ E I L + Sbjct: 439 --DQSQRNHLDTAQGSARNLLGLINDILDFSKIESGKFPIESVNFSLTNLLNETIRPLAI 496 Query: 342 RAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 RAQEK IE+ I D + S D + QV+ NL+ NA+KFT G + V V Sbjct: 497 RAQEKGIELVSDITDITSQSFKGDPTRISQVLTNLIGNAIKFTEK-GSITVYVKQNDDIE 555 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G G+A ++ + F Q + G GLGL IA+ + GG + Sbjct: 556 PRLNFSVEDTGIGLASNQLEKLFQPFTQADSSTTRHFGGTGLGLSIAKRLTELMGGSISV 615 Query: 459 RSKLREGVEVIA 470 S +G + Sbjct: 616 VSTEGKGSKFSF 627 >gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 768 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + R RAEE + KS FLA+MSHE+RTPLNAI+GFSE++ + ++ Sbjct: 520 IQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDM--EISP 577 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I ++ LL LIN+ILDLSRI++G+ + + L +++ QL Sbjct: 578 NERDEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLMP 637 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + + ++ + + AD + QVI NL++NA KFT G + + +T + I Sbjct: 638 Q-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQ-GYILIKYDYTQDKRWIQI 695 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + V F + QG GLGL I Q I+ + GG + SK Sbjct: 696 SVTDTGKGIPADKQAQVFERFNKLDE----FAQGTGLGLAICQIIIEHFGGYITLESKEG 751 Query: 464 EGVEVIAILP 473 EG I LP Sbjct: 752 EGSTFIVTLP 761 >gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 138/277 (49%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L + R AEE N AKS+FLA+MSHE+RTP+N I+G E+ + Sbjct: 537 REITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELALMGCKDAR 596 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +EY+G S +LL+++N+ILDLS+IEAGR EL +S +++ + + Sbjct: 597 S----REYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESLFAIQGSQ 652 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG 400 A++K + +DP++ + DE +RQ++ NL+ NAVK+T G V VT Sbjct: 653 AEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTAEVLKQDQ 712 Query: 401 ------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 SI+D G GIA ++P + F +G A + G GLGL I + + Sbjct: 713 EQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTRG--AQDAEFGGTGLGLTITKQL 770 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + G+ +RS L +G L +L P++ Sbjct: 771 VELMNGRIDVRSTLGQGSTFTVSL----LLQTAPKEA 803 >gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 765 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 129/256 (50%), Gaps = 9/256 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + E ++ E + A+ N AKS+FL +MSH++RTP+NAI+G + + T+ Sbjct: 226 EQEETMQNALREALESAQNANAAKSQFLFNMSHDIRTPMNAIIGMTTLA---TLHLHEPS 282 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ +G I S +HLL LIN++LD+S+IE+G+ L+ L ++V +LQ +A Sbjct: 283 RIRDCLGKISASSRHLLGLINDVLDMSKIESGKIALNNEEFDLPELVAGLFTILQQQASS 342 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399 + +++ + V D + Q++LNL+ NA+KFT GGR+ + + Sbjct: 343 RRLDLDISVSGIDHEKVIGDTLRVNQILLNLMGNALKFTPAGGRIRLAITELPPQYPGYG 402 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G G+ + + F + A S +G GLG+ I ++I+ GQ ++ Sbjct: 403 TYRFVVSDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNGQIDVQ 462 Query: 460 SKLREGVEVIAILPNT 475 S+ +G LP Sbjct: 463 SEPGKGTTFTVTLPLK 478 >gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 773 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 7/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + + A+ N AKS FLA+MSHE+RTP+NAI+G + + T +N Sbjct: 247 ISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALEST----DN 302 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ + RS LL+L+N ILD S++EA + E+ + +L + + + Q++AQ Sbjct: 303 EQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQ 362 Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K +++ + D + + QV+LNLLSNA+KFTA G + +TV + Sbjct: 363 QKQLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTAS-GHIILTVEKRENQLA-F 420 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E + +F Q +I G GLGL I + ++ GG + S++ Sbjct: 421 SVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVD 480 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 481 KGSCFSFALPV 491 >gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. glycinea str. B076] Length = 917 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLACTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 637 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 15/255 (5%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I E +EY+ Sbjct: 268 QELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTEGEEEKREYLE 323 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ + N+E+ Sbjct: 324 IIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKS-NVELKV 382 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 D + QV+ N LSNA+K T G + + + G + + D G GI Sbjct: 383 IRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLKLYVSDTGCGI 440 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ ++P + T F + QG GLGL I +SI+ GG+ + S+L +G L Sbjct: 441 SKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYL 496 Query: 473 PNTRVLNFIPEDNHE 487 P IP++ E Sbjct: 497 P----YQEIPKEVVE 507 >gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201] gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201] Length = 896 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of antifungal antibiotics [Pseudomonas fluorescens Pf-5] Length = 917 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 169/370 (45%), Gaps = 16/370 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALS-- 175 L W L L G Y ++ S L+ A L+++AL + + + A++ Sbjct: 149 LGWVELDLSHSGMLLRGYRNLFASLLLIPAGLAVTALLAVRMGRTINNPLTQIKQAVAQL 208 Query: 176 ---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + L + + + + + I + + +E+ Sbjct: 209 KDGNLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQNLETIEIQN 268 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+G Sbjct: 269 IELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLG 324 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF- 351 I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 325 TIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVS 384 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDN 408 + S+ D ++Q++ NL+SNA+KFT G V + ISI+D Sbjct: 385 LVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDT 444 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 445 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEF 504 Query: 469 IAI--LPNTR 476 LP TR Sbjct: 505 WISLNLPKTR 514 >gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 585 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 Y L + +++ A++ + R++AEE + KS FLA++SHE+RTPL Sbjct: 288 YPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPL 347 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF ++I + E +++ + H+ HLLN+IN+ILD+++IEAG+ EL + Sbjct: 348 NGMIGFLKLILEGM--ADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKMELVCA 405 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382 I L ++ + ++ +A+ KN+ ++ P V + + + QV+LN++ NA+KF Sbjct: 406 PIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKF 465 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG + V+ + I D G G++ + + F Q + Sbjct: 466 THEGG-ITVSADVVLKKGKLQEQHFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRT 524 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN--TRVLNFIPEDNHE 487 G GLGL I+Q ++ GG+ S G V +P V+ + + E Sbjct: 525 RQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLYQQPVMLSSNDADAE 582 >gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A] gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1319 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 14/269 (5%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+D LE + L++E A+E + KS+FLA+MSHE+RTP+ ++G +E++ + Sbjct: 701 ERDIEAQALEKRQLLANEA--AAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVEL 758 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + +E +I RS LL +IN+ILD S+IE+GR ++ E SL +++E ML Sbjct: 759 ----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKML 814 Query: 340 QLRAQEKNIEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 A+ K++ +I + V D +RQ+I NL +N++KFT G V + V Sbjct: 815 SFTAERKSLAFNYEICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHE-GHVKLHVSVE 873 Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 I +K D G GI E + + F QG + G GLGL I+++++ Sbjct: 874 QETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELM 933 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G+ + SK EG +P + Sbjct: 934 KGRMALASKKDEGTTATFWIPFKKPQKAQ 962 >gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 899 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ + A+ N AK+ FL+SMSH++RTP+NAI+G + + + P E ++ + Sbjct: 373 ALEDAYQTAKVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLAEP---ERVRDCLNK 429 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ S +HLL+LINE+LD+S+IE+G+ +L ++L ++++ M + EK ++ Sbjct: 430 INVSSRHLLSLINEVLDMSKIESGKIDLLPEEVNLPELIQNVSDMCKPLIAEKQLDFKIS 489 Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKD 407 + V D M+QV++NLLSNA+K+T GG V + + + D Sbjct: 490 VSYVRHEKVITDGDRMQQVLMNLLSNAIKYTPDGGTVSLRIKEIPSITDKKGQFEFIVTD 549 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G G+ E IP + F + + S QG GLG+ I ++I+ G + S++ +G Sbjct: 550 DGIGMPEDFIPLIFDPFSRAEDSRISKIQGTGLGMAITENIVRMMNGSIEVTSQMEKGST 609 Query: 468 VIAILPNTRVLNFIP 482 L V IP Sbjct: 610 FTVTLQFELVDEDIP 624 >gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234] gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234] Length = 917 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 7/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ + + AE + AKSRFLASMSHELRTPLNAI+G+SE++ E N Sbjct: 398 ITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSEMLIEEAHDHGEN 457 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I +G+HLL LIN+ILDLS+IEA + E+ + + ++ + + Sbjct: 458 ELVPD-LEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLGDVSATVAPLMA 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQ 401 + Q+ D L + +D+ +RQ + NLLSNA KFT GGRV ++ G Sbjct: 517 KNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFT-TGGRVTLSARREGRADGDWL 575 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G+ ++ + +F Q + G GLGL I +S GG + S+ Sbjct: 576 VFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSRMIGGIVNVESE 635 Query: 462 LREGVEVIAILPN--TRVLNFIPEDNH 486 +G +P R P Sbjct: 636 AGKGSVFTMEVPALCRREAEVPPAAEP 662 >gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group] Length = 653 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + I+ G L + L ++ + L A EL + + Sbjct: 103 GLKIRFYAGMPLITPDGHAVGVLCAADHEPRSLNENQKRALHIVARHVITTLELGIKNNE 162 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +K AE LAK FLA+MSHE+RTPLNAI+GF+E++ G ++ + +I D+ Sbjct: 163 LLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLS----GTPLDKQQQAFIQDV 218 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G++LL ++N+ILDLS+IE+G L + +L +R +L+++ +E + Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVK-TADGVEFNLYL 277 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409 D L V D+ + Q+++NL NA+KFT G V ++V S+KD G Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNE-GEVTISVKNKGETEDSYTIRFSVKDTG 336 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + ++ F QG G GLGL I + ++ H + ++S+ G E Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396 Query: 470 AI 471 Sbjct: 397 FT 398 >gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS 513.88] Length = 2354 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 14/292 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ + + + +N ++ Q E E AK E + E+ Sbjct: 1844 IGISLSNALLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAA 1903 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ G + EY+ I LL LIN Sbjct: 1904 KAKSIFLANISHDLRTPMNGVIGLSELLK----GTKLDREQDEYVESIRVCADTLLTLIN 1959 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S +++ + + E + L+ +++ +E + +D V D Sbjct: 1960 DILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPELVVLGD 2019 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V V + S+ D G GI+E + + Sbjct: 2020 PVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLF 2079 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG + S G V L Sbjct: 2080 RPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTVTFHL 2131 >gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] Length = 1522 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 F T + + + I + A+++ R+ AEE N AKS FLA+MSHE Sbjct: 722 FIQSTGTVERDENGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAFLANMSHE 781 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTP+NAILG ++ + + +Y + + LL L+N+ILD S+IE+G+ Sbjct: 782 LRTPMNAILGMLTLLRRTGL----DRKQADYAAKSETATRTLLRLLNDILDFSKIESGKM 837 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 L + ++R+ ++L + +E+ IDPSL V D ++Q++ NL N Sbjct: 838 ALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGN 897 Query: 379 AVKFTAIGGRVH-VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT G V + V S + ++D G GIA T+ + F Q + Sbjct: 898 ALKFTEQGEVVLFIKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAEASTTRRF 957 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I+Q +A GG+ + S+L +G + + +P D + Sbjct: 958 GGTGLGLVISQRFVALMGGELTLESQLGKGSLFHFTI-----MLSLPSDTN 1003 >gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 883 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ ++ + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 718 >gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 637 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + +V E + +L+ Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +++ + D + QV+ N LSNA+K T G + + Sbjct: 374 MKK-GVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486 Query: 463 REGVEVIAILPNTRVLNFI 481 +G I LPN +V + Sbjct: 487 GQGSTFILYLPNRQVQEVV 505 >gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 867 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 11/257 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D + EL+V + + +AE ++AKS FLA+MSHE+RTPLN ILG +++E T+ Sbjct: 465 DVDLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPLNGILGMLQLLETTTI-- 522 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ KEY+ +S + L L+++ILDLS+IE+ R + + + ++VR + Sbjct: 523 --SDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSVSEAFSI 580 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +E + +D ++ + DE MRQ++ N++ NA+KFT G++ V + S Sbjct: 581 SIKENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPT-GKIEVELSLLSHHT 639 Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +S+ D G GI + +L F Q + ++QG GLGL I + ++A GG Sbjct: 640 NKSCRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLVALLGGN 699 Query: 456 FLIRSKLREGVEVIAIL 472 I S+L G + Sbjct: 700 ICIDSELGAGTTFYVVF 716 >gi|30261120|ref|NP_843497.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Ames] gi|47526275|ref|YP_017624.1| sensor histidine kinase/response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183954|ref|YP_027206.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Sterne] gi|65318399|ref|ZP_00391358.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165871661|ref|ZP_02216306.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0488] gi|167635457|ref|ZP_02393770.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0442] gi|167638936|ref|ZP_02397210.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0193] gi|170687610|ref|ZP_02878826.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0465] gi|177653531|ref|ZP_02935705.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0174] gi|190566627|ref|ZP_03019544.1| sensor histidine kinase/response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816148|ref|YP_002816157.1| sensor histidine kinase/response regulator [Bacillus anthracis str. CDC 684] gi|229600347|ref|YP_002865551.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0248] gi|254682823|ref|ZP_05146684.1| sensor histidine kinase/response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725609|ref|ZP_05187391.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A1055] gi|254734235|ref|ZP_05191948.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740116|ref|ZP_05197808.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Kruger B] gi|254753457|ref|ZP_05205493.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Vollum] gi|254758554|ref|ZP_05210581.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Australia 94] gi|30254734|gb|AAP24983.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Ames] gi|47501423|gb|AAT30099.1| sensor histidine kinase/response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177881|gb|AAT53257.1| sensor histidine kinase/response regulator [Bacillus anthracis str. Sterne] gi|164712562|gb|EDR18094.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0488] gi|167513066|gb|EDR88438.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0193] gi|167529075|gb|EDR91829.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0442] gi|170668423|gb|EDT19170.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0465] gi|172081335|gb|EDT66409.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0174] gi|190562179|gb|EDV16147.1| sensor histidine kinase/response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006998|gb|ACP16741.1| sensor histidine kinase/response regulator [Bacillus anthracis str. CDC 684] gi|229264755|gb|ACQ46392.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0248] Length = 896 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 912 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 10/250 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I + + + + RAEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 527 IITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEK 586 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E YI I + Q LL LI+++LD+++IEAG + + S++ L ++ E +R Sbjct: 587 SE----YINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRI 642 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + D V + + Q+I+NLL+NA+KFT G++ + Y Sbjct: 643 TSPDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQK-GKITFGYKLQKEK-IYF 700 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + F + + QG GLGL I +SI+ GG+ + SK+ Sbjct: 701 YVTDTGCGIPAEKQDKIFERFIKL----NNFAQGTGLGLSICKSIVDAMGGEIGVDSKVG 756 Query: 464 EGVEVIAILP 473 G LP Sbjct: 757 NGSTFWFTLP 766 >gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 984 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 9/271 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E L +LE + + + A+ N AKS FL+ MSH++RTP+N I G +E+ + Sbjct: 451 TELRKLQHQLEERTEMLNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTEIADAHL 510 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P E K+ + I S HLL LIN++LD+S+IE+G+ + + +SL D+VRE I++ Sbjct: 511 QDP---ERVKDCLHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMI 567 Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + K + ++ ++DE +RQ++LNLLSNA KFT G++ V Sbjct: 568 TLPNVRAKRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLE 627 Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D GPGI E + +F + + +G GLGL I + + G Sbjct: 628 NNAALSFTVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDI 687 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++ S +G LP + IP E Sbjct: 688 ILGSLPGQGTTFRVTLP----MQHIPVPPIE 714 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E R AEE + AKS FLA+MSHE+RTP++AI+G SE+ + Sbjct: 323 ITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMTLNTNLTG--- 379 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ + ++ + LL++IN+ILD+S+IEA + EL +L +++ + + +L+++A+ Sbjct: 380 -EQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQLSVLKVQAE 438 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399 EK IE+ + +S + DE + Q+I+NL+ NA+KFT G V V+V + G Sbjct: 439 EKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEK-GYVEVSVDHVGSFEEGA 497 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +KD G GI+E + + SF Q + G GLGL I++ ++ GG Sbjct: 498 VLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFS 557 Query: 460 SKLREGVEVIAI 471 S+ G E Sbjct: 558 SREGWGSEFKFT 569 >gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 999 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 97/257 (37%), Positives = 146/257 (56%), Gaps = 6/257 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + Q L+A LE +++ + +RAE N AKS FL+ +SHELRTPLNAILG+S+++ Sbjct: 500 AYQLRDTLLLAALEFSQTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMN 559 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + KEYI I+RSG+HLL+LIN++L++S+IEAG+ L+E++ L ++ Sbjct: 560 RN---TSLSPQQKEYIEIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSI 616 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 QL+A K + + + + V DE +RQV+ NLL NA+KFT G + VT Sbjct: 617 EKTFQLKASAKKLGLIFQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTT 676 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + S+ D GPGIAE E+ + F Q +KS QG GLGLPI++ + G Sbjct: 677 KEAPCLKIFFSVSDTGPGIAESELSVLFDPFVQTQAGLKS-MQGTGLGLPISRQFIELMG 735 Query: 454 GQFLIRSKLREGVEVIA 470 G+ + ++L G Sbjct: 736 GELTVNTQLGSGSTFSF 752 >gi|32472478|ref|NP_865472.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1] gi|32443714|emb|CAD73156.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1] Length = 1998 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 8/303 (2%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + S + A + + + ++ E + +L K Sbjct: 1358 IADYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHERTESVVRHSKELELTAQQLTATKEK 1417 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + AEE N AKS FLA MSHE+RTP+ ILGF+E++ + ++ + ++ I Sbjct: 1418 LQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVT--DDAERESHLQTI 1475 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H +G HLL+L+N+ILD+S+IEA + E + +V++ I L+ +A EK+I + ++ Sbjct: 1476 HSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLEIQV 1535 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409 D +++D +RQ++ NL SNA+KFT GG V +++ I+++D+G Sbjct: 1536 DSEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKMKIAVRDSG 1594 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + + F Q ++ G GLGL I++ + G + S+ G ++I Sbjct: 1595 IGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQMI 1654 Query: 470 AIL 472 Sbjct: 1655 LNF 1657 >gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 954 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 10/272 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ +LE E R +A + AK+ FLA+MSHE+RTP+N +LG + ++ Sbjct: 386 RTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLL 445 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + ++Y+ + S + LL +IN+ILD S+IEAG++ + + L + + Sbjct: 446 DTALST----EQRDYLQTLRHSSESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDT 501 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + ML +Q++++E+ ID V D +RQV+ NLL NA+KFT G V + V Sbjct: 502 LDMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGNAIKFTEQ-GEVLIQVL 560 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D G G++ + +F Q + G GLGL I + ++ Sbjct: 561 PLDEDPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKRLVE 620 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GG+ ++S G + + + P Sbjct: 621 LMGGEIGLQSMPGLGTRIWFTVRFALQADAAP 652 >gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] Length = 896 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 696 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 13/281 (4%) Query: 219 AEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + D L E K L + R AE N K FLA++SHELRTPLNAILG+S++I Sbjct: 286 TDIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATLSHELRTPLNAILGWSQLIL 345 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 G + NE + + I R+ + LI ++L++S I + + L L I Sbjct: 346 Q---GTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEWDLGAIAEAA 402 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + A+ K I I + ID + V D ++Q+I NLLSNAVKFT GG V V V Sbjct: 403 VESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIWNLLSNAVKFTPDGGTVEVIVER 462 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + + + I +KD+G GI + V F Q ++ G+GLGL I + ++ HGG Sbjct: 463 AASQLRVI-VKDSGVGIKPEFLAYVFDRFRQADSSLTRNHGGLGLGLAIVKQLVGLHGGT 521 Query: 456 FLIRSK-LREGVEVIAILPNTRVLNF-----IPEDNHESTQ 490 SK +G LP + + +P+ Sbjct: 522 VCAESKGEGQGASFCVTLPPAPIKDGMDRQLLPDAKPSQKD 562 >gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 834 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 150/282 (53%), Gaps = 16/282 (5%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + + L +E + + R++A++ N AKS FLASMSHELRTPLNAI Sbjct: 330 QEVQHRTAELEQLNQSLEIHVEQRTAALEAARQKADQANRAKSEFLASMSHELRTPLNAI 389 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LGFS+++ + + + I+RSG+HLL LIN++LD+S+IEAGR L+ + + Sbjct: 390 LGFSQLMSEDQAIST---QQQNTLQIINRSGEHLLELINDVLDMSKIEAGRTTLNPADFN 446 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L +++ M L+AQ K +++ K+D L + DE +RQV++NL+ NA+KFT Sbjct: 447 LHGLLQSLYDMFNLKAQSKGLKLALKLDDHLPQFIHGDESKLRQVLINLIGNAIKFTEA- 505 Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V +T G G +++D+GPGIA E+ + F Q + A+QG GLG Sbjct: 506 GEVSITAGMAEQTGDGELSLTFAVEDSGPGIAPDEVERIFDPFIQAKSS--QAQQGTGLG 563 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLN 479 L I+ + G + SKL G + P + V Sbjct: 564 LAISAQFVRLMKGDISVCSKLSRGSIFRFTIGCQTPLSSVAP 605 >gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum ATCC 824] gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum EA 2018] Length = 566 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +++F+A++SHEL+TPL +I GF+E + ++ E++ I L LI++ Sbjct: 346 MRTQFVANVSHELKTPLTSIKGFAETLR----YVEDDNQKGEFLDIIDDEVDRLTRLISD 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + + + + +I++ +L+ A KNI + + + ++ D Sbjct: 402 ILTLSDIEIRPF-MKKEEFDVNEIIKAVCGLLEKSASRKNISLKVFGE-DVPNLIGDNDK 459 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q+I+NL+ NA+K+T GG V V +T IS+KDNG GI + + + F + Sbjct: 460 FKQMIINLVDNAIKYTEAGGEVSVYKKYTKDD-VIISVKDNGVGIPKEHLQRIFERFYRV 518 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A A G GLGL I + I+ N G I SKL G E I +P Sbjct: 519 DKARSRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEFIITIP 564 >gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 882 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHNNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 576 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 141/291 (48%), Gaps = 8/291 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV S + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ + E E + + S + LL +I++ILDLS+IE+G + L+E Sbjct: 231 NSVLGMLDILRQSRL----TEQQFEVLNQMECSAELLLAIISDILDLSKIESGSFHLNEK 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 +L D V I + A KN+ + + S W D + QV+ NL+ NA KFT Sbjct: 287 WTNLSDAVTLVIYQQKQLATNKNLSFEYQCNLDSNKQYWIDSTRVSQVLFNLIGNASKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG ++VTV S IS+ D G GI + +I + T+F QG +I G GLGL Sbjct: 347 DFGG-INVTV-IESDGQLVISVIDTGIGIPKAKIGNLFTAFHQGDSSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHESTQYKC 493 I + ++ G ++S+ G +P TR P + S K Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRPVKSEPSYPSKA 455 >gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 882 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHNNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 1045 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I E + ++ + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + +EYI I + LL LI++ILDLS+IEAG + S S + L DI+ E +++ R Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402 + I++ + ++ + QV+ NLL+NA KFT+ G +T G+ GR Y Sbjct: 777 ETSGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 833 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ Sbjct: 834 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 889 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492 +G +P + P D + K Sbjct: 890 GKGSTFWFTIP------YQPADADNKKEDK 913 >gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 1045 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I E + ++ + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + +EYI I + LL LI++ILDLS+IEAG + S S + L DI+ E +++ R Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402 + I++ + ++ + QV+ NLL+NA KFT+ G +T G+ GR Y Sbjct: 777 ETSGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 833 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ Sbjct: 834 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 889 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492 +G +P + P D + K Sbjct: 890 GKGSTFWFTIP------YQPADADNKKEDK 913 >gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 624 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 144/257 (56%), Gaps = 11/257 (4%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E +N K++FLA+ SHE+RTPL +I+GF+E++ + E ++EY+ I SG+HL Sbjct: 232 LEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYQAE-RERHQEYLQIIQSSGKHL 290 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+LIN+ILDLS+IEA + E+ + + + + + +++ +A +K +++ +I +S++ Sbjct: 291 LSLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLALVKEKAGDKGLKLQIQISEDVSTL 350 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D ++Q++LNLL NA+KFT + G V + V ++ D G GI+E ++ + Sbjct: 351 LVDPLRLKQMLLNLLFNAIKFTNV-GSVGLRV-VIKDSWLRFTVWDTGVGISEEDLSLLF 408 Query: 422 TSFGQGSIAIKS---AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--- 475 + Q I + G GLGL + + + HGG +RS+L +G E ILP Sbjct: 409 RPYTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTIILPLKSHR 468 Query: 476 --RVLNFIPEDNHESTQ 490 + L P+ + E + Sbjct: 469 TTQTLEIQPKQDLELSD 485 >gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017] gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017] Length = 735 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 4/260 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + K L ++E A+ N AKS FLA+MSHELRTPL ++G S + Sbjct: 337 QVRQHKQTLDKQVEQRTQELHAALLAAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLL 396 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++GPL + + + IH SG+HLL LIN+ILD S +++G+ L+ S SL +V++ Sbjct: 397 RWSLGPLTD-KQRSCLQTIHDSGEHLLELINDILDFSHVQSGKATLNVSDFSLTTLVQQL 455 Query: 336 IIMLQLRAQEKNIEIF--QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + +++ +A +++ KI P AD + ++Q++++L NA+KFT +GG+V + V Sbjct: 456 LQVMRDKADAHQVQLKANLKIPPERDRFIADLRRVQQILISLTDNAIKFTPMGGKVTLRV 515 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 W ++D G GI+ ++P + F Q + +G GLGL +AQ + H Sbjct: 516 -WVETNTVVFQVEDTGIGISSSQLPHLFEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQ 574 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G LP Sbjct: 575 GWIDVSSEEGQGSIFTVQLP 594 >gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 631 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L A I L A + E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 377 LLILIAAITYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + +EY I + LL LIN+ILD+S+IEAG ++ S I + + Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 E ++LR +++ + + +++ D+ + Q+I N + NA+KFT G + + Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFT-QIGSIRMGY 551 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + D G G++E + V F + QG GLGL I Q I+ G Sbjct: 552 RLKDADTICFYVSDTGCGMSEEQCRHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G LP Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627 >gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1084 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 14/292 (4%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + H S +++L+ A + L + + + AE N AKS Sbjct: 561 LWGLLACYQNSHPRHWQSSEIQLLNQIAHQLGLAIQQSELLKALETAKNTAESANRAKSD 620 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA MSHELRTPLNAILGFS+++ +E KEYI I++SG+HLL LI +LD+ Sbjct: 621 FLAHMSHELRTPLNAILGFSQLLNN---DENLDEEQKEYIDIINQSGEHLLTLIKSVLDM 677 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 ++IEAG L ++L +V+ M +L+AQ KNI++ I + S + DE +RQ Sbjct: 678 AKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQCKNIDLTVDIGNDVPSLIMGDEGKLRQ 737 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLT 422 V++NLL+NA+KFT G+V +++ + + I+D GPGI E P + Sbjct: 738 VLINLLNNAIKFTEE-GKVILSIKKSQQQQEKSSQIIPLRFEIEDTGPGIDIEEAPRLFQ 796 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + K+ +G GLGL I+ + GG + ++ G LP Sbjct: 797 PFFQTKLGQKTQ-EGTGLGLTISYEFVHLMGGTLQVSCPIKGGTIFYFTLPV 847 >gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii] Length = 917 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 162/371 (43%), Gaps = 18/371 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W + L ++ LLIA+ + + L + ++ + + Sbjct: 149 LGWVEVEL-SHNGMLLRGYRSLFASLLLIAIGLICTAALALRISRTINSPIGQIKQAVAQ 207 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-------A 231 + ++ + I Q D ++ Sbjct: 208 LKDGNLETRLPPLGSQELDQLASGINRMAETLQNAQEELQHSIDQATEDVRQNLETIEIQ 267 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 D TRK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P +Y+ Sbjct: 268 NIELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RQLDYL 323 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I +S +LL +INEILD S+IEAG+ L +L D++++ + +L A K +E+ Sbjct: 324 GTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELV 383 Query: 352 -QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKD 407 + ++ D ++Q++ NL+SNA+KFT G V V IS++D Sbjct: 384 SLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQD 443 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG E Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSE 503 Query: 468 VIAI--LPNTR 476 LP TR Sbjct: 504 FWISLNLPKTR 514 >gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1432 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 15/342 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 LP V+ S +H+ I + Sbjct: 829 LPILYEDQVLGVIELASFSRFSEVHLAFIDQFVNTIGVSINTIIANARTESLLSESQRLT 888 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E EL+ + + +E + KS FLA+MSHELRTPLN++L + ++ Sbjct: 889 TELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNA 948 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L+ + + + IHRSG LL LIN+ILDLS+IEAGR ++ + L+ ++ Sbjct: 949 DQRLSPQEVQ-FATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLMKLLDYVHAT 1007 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 + A ++ + + + +++DE+ ++Q++ NLLSNA+KFT GG V + V Sbjct: 1008 FRPLAIDRGLSFEIAVGEDVPRELYSDEQRIQQILRNLLSNALKFTPSGG-VKLRVERAV 1066 Query: 396 ----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + S+KD G GIA ++P + +F Q G GLGL I+ Sbjct: 1067 GTEFQEETLRDADAVVAFSVKDTGIGIASEKLPVIFEAFQQSDGTTSRKYGGTGLGLSIS 1126 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + I GG+ + S+ G +P P D + Sbjct: 1127 REIAGMLGGRIIAESEQGVGSCFTFYVPAHYAGVVPPPDVSD 1168 >gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555] gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016] gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555] gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 575 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 7/230 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +S+F+A++SHEL+TPL +I GF+E ++ + E +++ I + L Sbjct: 342 RLENMRSQFVANVSHELKTPLTSIKGFAETLK----YVEDVENRNKFLNIIDDEAERLTR 397 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+IL LS IE+ + I + I+ + M++ A +K+I+I + + +W Sbjct: 398 LINDILTLSHIESNEMD-KIEFIDINGIIDDVCYMMKPFADKKHIKIKKISCE-MPDIWG 455 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D +Q+++NL+ NA+K+T GG V V + I ++DNG GI++ + Sbjct: 456 DADRFKQMVINLVDNAIKYTNNGGWVKVGTAFQENDCL-IWVEDNGVGISKEHQERLFER 514 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A ++ G GLGL I + I G + S++ +G + +P Sbjct: 515 FYRVDKARSRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIP 564 >gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 852 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 14/282 (4%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L + ++L Q + I++++ A+S ++ AE N A+ FLA Sbjct: 148 WFLLRGAVAARNAEGKPARVLVLQRD----ISDVKAAESALISAKEVAESANKARGAFLA 203 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+N I+G +E+ + + + Y+ + S + LL ++N+ILD S+I Sbjct: 204 NMSHEIRTPMNGIIGMTELALDTQL----DAEQRHYLKTVKSSAEALLTIVNDILDFSKI 259 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG+ E S+ D V E + +L + A +K +E+ + P + + D +RQVI+ Sbjct: 260 EAGKMEFESLVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVII 319 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G V + V + SI+D G G+ + + +F Q + Sbjct: 320 NLIGNAIKFTER-GEVALKVEVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADV 378 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I+ ++ G+ + S +G Sbjct: 379 STTRRFGGTGLGLAISARLVQLMDGKIWLESTPGQGSVFSFT 420 >gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 939 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 21/366 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALS 198 Y SATL + L+ F L P+ ++ + I H + + Sbjct: 175 YLSATLGTFFIFNLLAIFALLNVTASLLRPIEKISDTVNKITQGHFGATKGLNLPTQYST 234 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSR 251 + + + + D ++ +E K A E N KS+ Sbjct: 235 VVSDLNDISSRLENHRAEILSNVDQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQ 294 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHE+RTPLNAI+G+ ++++ + + ++ + Y+ I +S +LL +I++ILD Sbjct: 295 FLANISHEIRTPLNAIMGYIQILQKDQL----DKQQRLYMDTIAQSTTNLLTIISDILDF 350 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQ---LRAQEKNIEIFQKIDPSLS-SVWADEKG 367 S+IEAG+ L + I++ DIV E +L L K +++ + D + V D Sbjct: 351 SKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVR 410 Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +RQV+ NL+ NA+KFT G V + S I D G GI E ++ + F Sbjct: 411 IRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPF 470 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIP 482 Q + G GLGL I + ++ GG + S+ G +L ++ + Sbjct: 471 SQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNFRFTIVLKPSQKEQKVE 530 Query: 483 EDNHES 488 E +S Sbjct: 531 EPISKS 536 >gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7425] gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425] Length = 2051 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 163/343 (47%), Gaps = 27/343 (7%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 S L +L + L+T A + + L A + L ++N Sbjct: 1470 SVLCAPILHQGKLTGMLYLENNLTTGAFTQDRLEVLQLLAAQAAISIENARLYADLEEAN 1529 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE----NLAKSRFLASMSHELRTPLNAI 267 + + E+ + E + + R+RAEE + AKS FLA+MSHELRTPLN I Sbjct: 1530 HTLEAKVTERTIELEEKNLHLQQEIQERQRAEEAAKVASRAKSEFLANMSHELRTPLNGI 1589 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG+S+++ E + + IH+ G++LL LIN++LDLS+IEA + EL S + Sbjct: 1590 LGYSQILSKN---KALTEQQQNGLNVIHQCGEYLLTLINDVLDLSKIEARKMELYPSTFN 1646 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L + + + ++RA +K I + +I L V ADEK ++QV+LNL+ NA+KFT Sbjct: 1647 LPHFLENMLEICRIRATQKQISLNYEILSPLPQFVHADEKRLQQVLLNLVGNAIKFTPA- 1705 Query: 387 GRVHVTVGW-----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 G V VG+ + I+D G GI+ ++ + F +G Sbjct: 1706 GIVTFKVGYVQHWPSAPAEQSSPNQAVAQSKIRFQIEDTGIGISPEQLEQIFQPFHRGGE 1765 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +G GLGL I++ ++ GG+ ++S L +G L Sbjct: 1766 PGQR-TEGTGLGLAISRQLVQLMGGEIQVKSILGQGSLFRLDL 1807 >gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 657 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 1/256 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + A+ E A+ N K+ FLA+MSHELRTPLNAILGFSE+I E GP+ Sbjct: 402 HDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPV 461 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ Y DI+ +GQHLL +IN+ILD+SRIE G + L ++ ++V C+ ++ R Sbjct: 462 GD-RYRIYGQDINSAGQHLLAMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTR 520 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ I + + + +L S+ D + +Q+++NLL NAVKFT GG V + S G Sbjct: 521 AEAAGIRLREDLPETLPSLMIDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMA 580 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G G++E +I L+ FGQ + +G GLGLP+A+S+ HGG I S Sbjct: 581 FHVADTGIGMSEADIAIALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEIISTP 640 Query: 463 REGVEVIAILPNTRVL 478 EG V P V Sbjct: 641 GEGTTVSVYFPAACVA 656 >gi|323499089|ref|ZP_08104069.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315924|gb|EGA68955.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 774 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 162/386 (41%), Gaps = 13/386 (3%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFL 165 + G+ + + P + + I T I+ ++ ++ A Sbjct: 101 RQMQQDSSLKGVSDGVFDVRAPISIGGKQYAIVDMGFETAPISAMLNNAQKALVGIATVE 160 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + +L+ ++ + ++ A + + ++ DD+ Sbjct: 161 VLLVALFSLALGTYLTRGLTRLASAANQVGQSGPGFQLN---HQGTDELSQVARAFDDMS 217 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A+LE + R AE N +KSRFLASMSHE+RTP+N +LG ++E + ++ Sbjct: 218 AKLERDYIDLNAARADAEMANDSKSRFLASMSHEIRTPMNGVLGILNILEETNL----SK 273 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + SG LL++IN+ILD +R+E+ L L V + A Sbjct: 274 EQRKLVTTATESGHFLLSVINDILDFTRMESNTLILESKPFDLHRCVTSVVDGFYPTATS 333 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI 403 +++ I I+P + V DE ++Q++LNL+ NA+KFT G R+ +++ + I Sbjct: 334 QDLLIHCYIEPDVPIHVMGDENRIKQILLNLIGNAIKFTHDGSVRIKMSLVPSDDSQATI 393 Query: 404 --SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I D G GI++ I + F +++G GLGL I + + G ++S+ Sbjct: 394 QCEISDTGIGISKSAIDYLFDEFTMVDQTYSRSKEGSGLGLAICKRLCNLMDGDVKVQSE 453 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487 + G + V P + E Sbjct: 454 PKVGSTFTFTIKLDTVSELNPHVDAE 479 >gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 1116 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 10/318 (3%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 L + I L S + + + + D+ E E + Sbjct: 524 TLGSSRQEVFLEARILLTDGQYHWTSTQIIYVENPYSGDQLAILLSRRIDEQKHEEEQHR 583 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + A+ ++AKSRFL++MSH++RTP+NAI+G + + + E +E + Sbjct: 584 QALQSALESAKAASVAKSRFLSNMSHDIRTPMNAIMGMTAIAASHM---DDQERVRECLR 640 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ S HLL+LIN+ILD+S+IE+G+ L + + ++V E +++ +A ++++ Sbjct: 641 KINLSSSHLLSLINDILDMSKIESGKISLRDEPFNFAELVAEVAELIRPQADAGHLDMNL 700 Query: 353 K-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIK 406 +D V D +RQ+ N+LSNAVK+T GG + V + + Sbjct: 701 SLMDLKDELVAGDPLRVRQICFNVLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFECS 760 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G++ + + F + + S G GLG+ I ++I+ GG + S+L EG Sbjct: 761 DTGLGMSPEFLDKLFLPFERVQDSTHSRVTGTGLGMAITKNIVDMMGGDIQVESELGEGS 820 Query: 467 EVIAILPNTRVLNFIPED 484 LP R+ N PE+ Sbjct: 821 AFTVTLPL-RLQNVPPEE 837 >gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896] Length = 602 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 3/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + + F+A++SHEL+TP+ I +SE + + + K+++ I + + Sbjct: 369 ERLDHMRKEFVANVSHELKTPITTIRTYSETLLDGAL--KDPAIAKKFMEVIVKESDRMT 426 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LI ++L LS I+ + + + ++++ I ++L Q K+ + + +W Sbjct: 427 SLIRDLLQLSHIDFKKETWNFDYTDINTLIQDSIDKMELYYQTKHQTLVSNLLGQSRQIW 486 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ M QVI+N+LSNA+K+T G++ +++ + S I I+DNG GI + ++ + Sbjct: 487 VDKTKMEQVIINILSNAIKYTEENGKISLSL-FVSEGILDIVIEDNGIGIPKEDVEHIFD 545 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + + G GLGL IA+ I+ HGG +RS +G LP Sbjct: 546 RFYRVDKGRSRQQGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTVFTISLPIEP 599 >gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 535 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 95/435 (21%), Positives = 181/435 (41%), Gaps = 40/435 (9%) Query: 65 WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 + ++ LAV + G+++ + ++ + + + + Sbjct: 104 LWIIPRYIEAFTF--LAVPFLMANPGRRIRIHYLIP----------VISLVLLASVFAGI 151 Query: 125 TL--VEPGTWTPEYLTIYKSATLLIALSISALSNF----------MLPYAVFLSFFPVVV 172 PG + I + I L L + + Sbjct: 152 FPDSFIPGEGLTPFKIISEYIISTILLISGILIWRNKEKFDKEVVKYLLLACGATILAEL 211 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAE 227 + + + + +A+ + + ++++ + D E Sbjct: 212 SFTFYVSVYGFSNMVGHLFNVASYYFIYVIMIRKKLLEPYEVINDLYQNLDKKVKVRTRE 271 Query: 228 LEVAKSLSDETRKRA----E---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 LEVA + ++R E E N KS F A+M+HELRTPL +++ F E++ E G Sbjct: 272 LEVANMRLAQGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSG 331 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P+ E +E + DI S Q L+ L+N+ILD+++ EAG + + + L D++R + Sbjct: 332 PITPE-QRENLLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMS 390 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A + I + + +L V+ D ++Q+++NL++NA+KFT GGR+ V+ G Sbjct: 391 AIAHQNGISLDVEKT-TLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVSAN-GEGDF 448 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 IS++D G GI+ +P + F QG + +G GLGL + +++ G+ + S Sbjct: 449 AIISVQDTGIGISPELLPHIFEKFRQGDHPKQRR-KGTGLGLALVKTLAELQDGKVAVDS 507 Query: 461 KLREGVEVIAILPNT 475 ++ EG LP Sbjct: 508 EVGEGSCFKIYLPFA 522 >gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 685 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 143/251 (56%), Gaps = 5/251 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ A+ + ++ AE+ N AKS FL+SMSHELRTPLNAILGF+++ E + N Sbjct: 280 ITQLKQAEEKVVKAKELAEKANKAKSEFLSSMSHELRTPLNAILGFAQLFE---LDKNLN 336 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E IG+I ++G+HLL LI ++LDL++IEAG+ + ++ + +V ECI +++ A Sbjct: 337 PAQRENIGEIEKAGKHLLELIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRPLAV 396 Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +EI + +SV AD ++QV +NL+SNA+K+ GRV + T + Sbjct: 397 KNRVEINVHNFELGNASVRADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEGHLRV 456 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D G GI + + F + A + +G G+GL I + ++ GG+ S Sbjct: 457 SVQDTGFGIPLKQQKYMFQPFNRL-GAERGEIEGSGVGLVITRQLVEQMGGELGFSSDEG 515 Query: 464 EGVEVIAILPN 474 +G + LP Sbjct: 516 KGSKFWVQLPL 526 >gi|237746428|ref|ZP_04576908.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377779|gb|EEO27870.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 1070 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 9/266 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++L + D+ + E + + K AE+ N AKS FL+ MSH++RTP+N I+G + Sbjct: 527 NRLLLTFRDIHDVREKEERVRQTLTDALKVAEKANNAKSDFLSKMSHDMRTPMNGIIGLA 586 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 + E KEY+ I + +HLL LIN++LD+S+IEAGR L E ++ + Sbjct: 587 MIAGQHR---HEPERMKEYLTKISVASRHLLGLINDVLDMSKIEAGRIVLVEEDFDVVAL 643 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 +R+ + ++ A+ + I ++D ++ V D ++QV +NLLSNA+KFT GG + Sbjct: 644 LRDVVDIVAPDARGRRHAIRFEVDETVFPFVKGDSLRLQQVFMNLLSNALKFTPEGGHIG 703 Query: 391 VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V+V T+ D+G G++ + + + F + ++ S G GLG+PI+ Sbjct: 704 VSVSETASPFDGYGAYRFVFSDDGIGMSPAFMDKLFSPFEREENSMTSRVSGTGLGMPIS 763 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 ++I+ G + S+ G Sbjct: 764 KAIVEMMNGTIDVESERGRGTVFTVT 789 >gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 1160 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +LE + E+ N +S FLA+MSHELRTPLN+I+ S+++ + + + + Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 E I I+++GQ LL LIN++LDLS++E+G+ L+ +++ + M + A+E Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404 KNI F + D S + D + Q++ N LSNA KFT+ G + + S Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFS 692 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E I + F Q I G GLGL I++ + G+ +RSK+ E Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752 Query: 465 GVEVIAILP 473 G LP Sbjct: 753 GSTFFLKLP 761 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 12/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R A K+ FLA+MSHE+RTP+NAI+G + ++ + Sbjct: 1059 ITSRKAAEHALAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDTALTK--- 1115 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E+ + RS LL L+N+ILD S+IEAG+ + L V + + +L +AQ Sbjct: 1116 -EQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQ 1174 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 K +E+ +D ++ + V D +RQ+++NL+ NA+KFTA G V + V + G Sbjct: 1175 SKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAA-GEVFLHVTRETQGGLDL 1233 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +IKD G GI E + +F Q + G GLGL I Q +++ GQ + S Sbjct: 1234 LRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVES 1293 Query: 461 KLREGVEVIAI--LPNTRVLNFIP 482 +G P L P Sbjct: 1294 HSGQGSTFWFTAQFP-ETTLATAP 1316 >gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1] gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 816 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 12/289 (4%) Query: 205 YHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ + L Q+E + EL+V K +E KR + K+ F+A+MSHELRTP Sbjct: 242 NRILEAQNRELQAQSEELEAQTEELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTP 301 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+I+G +E+I + KE + I+ SG+ LLN+IN+ILDLS+IE+G+ +L Sbjct: 302 LNSIVGLTELILKN---NQLDNELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEI 358 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 I L + + +++ + EKNI + D+ + Q++LNLLSN+VK+T Sbjct: 359 EEIDLTETIDYVSNIIKPQCNEKNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYT 418 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + + + + I +KD G GI E + + F ++ K QG GLGLP Sbjct: 419 EENGLIELIIE-EDTKYIIIHVKDTGIGIPEDLMQNLFEPF--VTMGRKFNVQGTGLGLP 475 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + + ++ GG+ ++SK+ EG +P +P+ K Sbjct: 476 LTKKLVNLLGGKIAVKSKVGEGTIFTVYIPKE-----LPQSLENQKDEK 519 >gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 677 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 6/256 (2%) Query: 222 DDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 D AE E + + ++ R AE N K FLA +SHELRTPLNAILG+S+++ + Sbjct: 267 DRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLRAKKF- 325 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + T + + I R+ + LI +ILD+SRI G+ L+ I L ++ I L+ Sbjct: 326 --DQATIDKALETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDALR 383 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A+ K+I I + V D ++QV+ NLLSNA+KFT GG+V V + G Sbjct: 384 PLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELV-GDY 442 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I D G GI+ +P V F Q + G+GLGL I + ++ HGG + Sbjct: 443 AEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTVGAEN 502 Query: 461 K-LREGVEVIAILPNT 475 G + LP Sbjct: 503 NSSGIGAKFTVSLPIA 518 >gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 652 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 8/243 (3%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHELRTPLNAI+G+SE++ E E + + I +G HLL LIN++L Sbjct: 142 SQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPD-LHKIKTAGNHLLGLINDVL 200 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IEAG+ EL I L ++ E I Q ++K K L + D +R Sbjct: 201 DLSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLR 260 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++LNL+SNA KFT G + + + + + DNG G+ E + + F Q Sbjct: 261 QMLLNLISNAAKFTEK-GTISLNI-QSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQADA 318 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-----TRVLNFIPED 484 + G GLGL I + GG + ++ +G LP +++ P Sbjct: 319 STTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLPRNAKVQKQIVKTTPTI 378 Query: 485 NHE 487 E Sbjct: 379 ETE 381 >gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMATSMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] Length = 2319 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q L E E +++ E + E+ Sbjct: 1746 VGISLANAFLYRNASKVSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1805 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + + Y+ I LL LIN Sbjct: 1806 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1861 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ +++ ++ + +D V D Sbjct: 1862 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPKLLVLGD 1921 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V I+ + D G GI+ ++ + Sbjct: 1922 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 1981 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L VL+ Sbjct: 1982 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2037 Query: 481 IPED-------NHESTQYK 492 P++ + +STQ K Sbjct: 2038 APKNSVVKTPWSQDSTQEK 2056 >gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar sotto str. T04001] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S L EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V + IP + E T Sbjct: 749 ATVDDVIPAEVVEET 763 >gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B] gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B] Length = 1947 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 8/256 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + A++ N AKS FLA+MSHE+RTP+NAI+G S + + + YI Sbjct: 1203 ELNHAMEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTS----KQRNYIEK 1258 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 +HRS + LL +IN+ILD S+IEAG+ ++ L D++ + ++ L+A++ +E+ Sbjct: 1259 VHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGLELLLD 1318 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNG 409 + P L + + D + Q+++NL +NAVKFT G V + S++D+G Sbjct: 1319 VPPDLPTALIGDPLRLSQILINLGNNAVKFTEDGEVVVAVRVEEESNAEVRMHFSVRDSG 1378 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + + SF Q + G GLGL I++ ++A G+ + S+ G + Sbjct: 1379 IGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIWVESEPGVGSDFQ 1438 Query: 470 AILPNTRVLNFIPEDN 485 + IPE Sbjct: 1439 FTACFEKQQGEIPEPT 1454 >gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 837 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 13/263 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + E +++ + A+ R AE N AKS FLA+MSHE+RTPLN ++G ++++L Sbjct: 421 RIEISMDLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLT 480 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + P+ ++Y +S L+ L+ +ILDLSRIEAG+ + + + L +++R+ Sbjct: 481 KLDPV----QEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGD 536 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + A+EK +++ +DP++ + D ++QV+ N++ N++KFT GG V V Sbjct: 537 LFSPTAREKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGG-VTVDASLL 595 Query: 397 SG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI + ++ + F Q + + QG GLGL I + +++ Sbjct: 596 PSVHGGQCRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSF 655 Query: 452 HGGQFLIRSKLREGVE--VIAIL 472 GG + S+L G Sbjct: 656 MGGNISVVSELEVGTTMYFSVTF 678 >gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 643 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 147/355 (41%), Gaps = 18/355 (5%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 + L + ++ L + V + A+ Sbjct: 146 PQLAPLLPKFLALTAVLLFGGVGVALFLARSLAHRVIQPVETLSKAM---------HDVA 196 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 + + + L S +L+ E++ +L A + R A N+ Sbjct: 197 AGGSFTPVEIETHDELFESLADSFNHLLAKLGERE---GDLRAAMRELESARDAANAANV 253 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K++FLA+MSHE+RTPLN +L +EV+ L + PL +E + I RSG LL ++N+ Sbjct: 254 LKTQFLANMSHEIRTPLNGVLAMAEVMALGELAPL----QRERLDVIRRSGGLLLAVLND 309 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEK 366 +LDLS+IEAG+ L + L + + ++ A K + + W D Sbjct: 310 VLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKGLGFEVTVAEEAQGWWRGDAD 369 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQ++ NLLSNAVKFT GG V V T I + D G GIA ++PT+ F Q Sbjct: 370 RLRQIVGNLLSNAVKFTMQGG-VRAHVDLTPAGALRIVVSDTGVGIAPEKLPTLFEKFTQ 428 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + G GLGL I + + GG + S+ +G LP R Sbjct: 429 ADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGSTFTVELPLQRGQPTS 483 >gi|197106645|ref|YP_002132022.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480065|gb|ACG79593.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 589 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 105/469 (22%), Positives = 180/469 (38%), Gaps = 33/469 (7%) Query: 27 YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86 ++ E + + + + V + ++ A + W A A Sbjct: 15 AGARWKVLDERLDIVARTSWDVVAVRVAAGVVAALLCVQPFGLAWSMGWLAAFAATEAGA 74 Query: 87 LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 + W L +A GL W L L + + + Sbjct: 75 RIASRAAWTGGALTRPARFWY--LTWMTLA-GLTWCALALRGWLSGQESLRLAAMAILVT 131 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + + S+ P A+ P + ++ SLA + +Y+ Sbjct: 132 VLVHAQGFSSRT-PAALAAMGLPAALLWMLLPLVGGGYDAQSLAIVGFGFTMALSYVAIA 190 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + +RA + N AKS FL+ ++HELRTP+N Sbjct: 191 ARATARSAAALADAE------------------RRANDANEAKSAFLSMVTHELRTPMNG 232 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G + ++ + P +EY I RSG LL ++N++LD S+IEAGR +L + Sbjct: 233 VMGMARALQQTDLSP----RQREYADTIVRSGDGLLAILNDVLDHSKIEAGRLDLEVAPF 288 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 +L + ++ + + A K +E+ IDP L V DE +RQ+ILNLLSNA+KFT Sbjct: 289 NLRAVSQQSLQLWTEAAAAKGLELDCDIDPELPAHVLGDETRVRQIILNLLSNALKFTEA 348 Query: 386 GGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GRV + + G I + D GPG+ ++ + + Q + G GLG Sbjct: 349 -GRVALALRRAPHADGEGGVEILVSDTGPGMTAEQVARLFRPYSQAEASTARRFGGTGLG 407 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 L I + GG+ + S+ G LP P + E+ + Sbjct: 408 LSICHRLSTMMGGEIGVESEPGRGSTFRVWLPL-PAAEGGPVEVSEAPE 455 >gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905] gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905] Length = 915 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 28/355 (7%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFT 201 ++ + ++ ++ F + L+ ++ + L M Sbjct: 388 VIAVVELATMTKFNALQQELMKQVTETFGLTVNGVLGRMEIVRLLNESRAMTEELQVQSE 447 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETRKRAEEENLA-------KSR 251 + + ++ + L + A+ ++ ++ EE KS Sbjct: 448 ELQTQSEELQMQTEELTMINEQLEERTKEAETKSRELEKAKQELEESAEQLILNSNYKSE 507 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLN+IL SE++ L +E E+ IH SG+ LL LIN+ILDL Sbjct: 508 FLANMSHELRTPLNSILILSEMLAENNQDHLTDEEA-EFAKVIHSSGEDLLALINDILDL 566 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQ 370 S++EAG+ ++ + +++ ++ + A +KNI+ ++ V + DEK +Q Sbjct: 567 SKVEAGKLDIIFNEVNVSEVPVQIEHTFAPVAMKKNIDFHISKADNVVDVFYTDEKRFQQ 626 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSG------------RGQYISIKDNGPGIAEGEIP 418 ++ NLLSNA KFT G V + + + I++ D G GI + + Sbjct: 627 IVKNLLSNAFKFT-EHGSVTLAINQLAQRQLTSNMQDISTDWLEITVSDTGIGIPKDKHQ 685 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q A G GLGL I + GG ++S+ +G +P Sbjct: 686 LIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITLQSEEGQGSIFTLTIP 740 >gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 633 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ A E + +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 387 IHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSM----VEDK 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY G I + + LL LIN+ILD+S+IE+G Y+ + + ++ E + +LR + Sbjct: 443 EEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIR 502 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + D+ + QV+ NL+ NA+KFT+ G + + Y Sbjct: 503 TDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQ-GEIQIGYRLQDAHTLYFY 561 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + + QG GLGL I + I+ GG+ ++S+ + Sbjct: 562 VSDTGCGMSVEQCEHVFERFVK----YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGK 617 Query: 465 GVEVIAILP 473 G LP Sbjct: 618 GSVFWFTLP 626 >gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 144/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNINDMAASMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TET-GSVSLHFDSIETTNLSPDMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDIQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 + + IP + E T Sbjct: 749 ATIEDVIPAEVAEET 763 >gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 1007 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E E E + +AE+ + KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E +YI I+ + + LL LIN+ILDLS++EAG EL L + ++ Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 R + +I + + V D + Q+I N ++NA+K+T+ G + +G+ Sbjct: 731 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G Y +KD G GIA+ + V F + QG GLGL I ++I GG+ Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S EG A LP + E+ E Sbjct: 844 SVHNEGSLFWAFLPCEVNTLSMVEEKKEEN 873 >gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 769 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++++ Q E + ++ AE LAK FLA+MSHE+RTPL Sbjct: 71 QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+ E+I + ++ + S LL ++++ILD S++EA + EL + Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 +L +++ I +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+KFT Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242 Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + + ++D G GIA + + SF Q + G G Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 699 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/328 (26%), Positives = 145/328 (44%), Gaps = 23/328 (7%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELE 229 V+ L + + + + + Q + Sbjct: 232 VLGLIDAPGSGAGLETLLETEGRFSDQELVVRTREGASRIILASADVVQVAGQRYLIAGG 291 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E R+ AE N AKS FLA+MSHE+RTPLN ILG + + + + +E Sbjct: 292 QDVTDLHEAREDAERANRAKSEFLANMSHEIRTPLNGILGMTSL----ALMTCTDHKGRE 347 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G +SGQHLL +IN+ILD+S+IE+ R+EL ++ + + + +++ A K + Sbjct: 348 YLGLAQQSGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVR 407 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402 + P + V DE +RQ+ +NL+ N++KFT G V V V + G+ Sbjct: 408 FDATVAPDVPDCVIGDEGRLRQIYVNLIGNSIKFTTA-GEVEVRVAVAATDGRREPAAMG 466 Query: 403 -------IS-IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 IS I+D G GI + + + +F Q ++ + G GLGL I++ ++ GG Sbjct: 467 GKGRICLISSIRDTGIGIPQKNLKRIFDTFAQV--SVGARYGGTGLGLSISKRLVELMGG 524 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482 + + S+ G RV P Sbjct: 525 RIWVESEPGRGSTFHFTAELLRVAPGEP 552 >gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 907 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E + +E A + AK+ FL+SMSH++RTP+NAI+G + +I + + E Sbjct: 374 EEQARQRRALEEAYHAARVASEAKTNFLSSMSHDIRTPMNAIMGMA-LIAQTNLA--SPE 430 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + + I S +HLL+LINEILD+S+IE+GR +L +SL +++R + M Q +E Sbjct: 431 RVADCLDKISVSSRHLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMCQPLLRE 490 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399 K +E ++ D ++QV++NLLSNAVK+T GG V V Sbjct: 491 KGLEFHVSASQVRHENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELPTGIKKRG 550 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++DNG G+ +P + F + S QG GLG+ IA++I+ G + Sbjct: 551 QYEFVVEDNGIGMPAAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMMNGTITVE 610 Query: 460 SKLREGVEVIAILPNT 475 S+ +G LP Sbjct: 611 SEPEKGSRFTVSLPFE 626 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 18/270 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ++ + ++ AE + KS FLA+MSHE+RTPLN ILG +E+ + Sbjct: 428 VTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILGMTELTLRTGLTR--- 484 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S L L+ +ILD SRIEAG+ EL L +I++ + ++++A+ Sbjct: 485 -EQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQAALKPMEMQAE 543 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K + + +IDP++ + D +RQV+LNL+SNA+KFT GG + + V T+ Sbjct: 544 AKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSGG-IDIDVLPTATSHTPS 602 Query: 400 --------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI V F QG ++ +G GLGL I++ ++ Sbjct: 603 GQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSRQYEGTGLGLAISRQLVEL 662 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GG + S + +G + R + I Sbjct: 663 MGGAIWVESAIGQGATFNFTVALERAIAPI 692 >gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 638 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 112/465 (24%), Positives = 176/465 (37%), Gaps = 37/465 (7%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 L + L V+LV + + + + +I + Sbjct: 13 LISAGLPVMLIVVLVVGWMATLRIDRYLEAREAKLSDIGQIVVQMEYYPDQHQAEIAMIR 72 Query: 105 VWR-----IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL---IALSISALSN 156 I L LV T + + LL +A + S+ Sbjct: 73 REHMADLNRRFGQEMILSVTILALGLLVPLITARHLSKLVGANLQLLEEHMAQAGPGGSS 132 Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---------- 206 M F F VV L T + I Sbjct: 133 LMPRTFDFKEFGSVVATLRTTLHERSEAERRWRRAEQELVDANADLIKRARELQDGRRIA 192 Query: 207 ---LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + + +A L +E AKS A+ N AKS FLA+MSHE+RTP Sbjct: 193 LSMMEDAELARVELEAINTRLGEVIEQAKS----AAHHADVANEAKSSFLATMSHEIRTP 248 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ++GF +++ + N +EYI + S + L+ LIN+ILD S+IE+GR E Sbjct: 249 LNGVIGFIDMLSQTEL----NAEQQEYIQSLQMSSETLMALINDILDFSKIESGRMEFET 304 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 +I+L+ ++RE + A +K +E+ + V DE +RQ+++NLL NAVKF Sbjct: 305 RSINLVRLLRETTQLFFGEAAKKGVELKLDFSEEVPRVVRGDETRIRQILINLLGNAVKF 364 Query: 383 TAIGGRVHVTVG----WTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 T G + V V WT+G I D+G G+ E ++ + F Q + Sbjct: 365 TDT-GSIAVAVHCYEPWTTGEVCEIEFEITDSGIGMTEDQVSKLFHPFLQADSSTTRKFG 423 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I + + GG+ S + EG + V + Sbjct: 424 GTGLGLAICKRLSEAMGGRIWATSTVGEGSCFFVRIRLEAVGDVA 468 >gi|255016168|ref|ZP_05288294.1| putative signal transduction histidine kinase [Bacteroides sp. 2_1_7] Length = 798 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 403 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 459 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 460 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDLENLYGEQAKSKGISYETILASDLE 519 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V T + D G GIAE Sbjct: 520 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 579 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 580 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 639 Query: 475 TRVLNF 480 ++ Sbjct: 640 GKIKES 645 >gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] Length = 735 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 11/261 (4%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 S D K+A K FLA+MSHE+RTPL+ ILGF+ +++ + +ET E++ Sbjct: 223 SELDIAEKKALVAAQTKENFLANMSHEIRTPLSGILGFTNLLQKRPL----DETSAEFVS 278 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I RSG++L+ +IN+ILDLS+IEAG ++ S+ +V RA+EK + I Sbjct: 279 SIQRSGENLMAIINDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLTISS 338 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDN 408 I+PS+ ++ D + Q+++NL+ NA+KFT G V + + + I D Sbjct: 339 TIEPSIPDTLVGDATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKISDT 398 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + ++ + F QG + G GLGL I +S++ G + S+ +G Sbjct: 399 GIGIDKEKLTEIFERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTF 458 Query: 469 IAILP---NTRVLNFIPEDNH 486 +P L +P + Sbjct: 459 HFYIPYGIAEEQLTVLPAADP 479 >gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 958 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 14/272 (5%) Query: 210 SNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + ++L ++ +L+A+ A L + ++ AE N +K+ F+++MSHE+RTP+N Sbjct: 425 AQEEVLKHKSRLVELVAQRTQELSKANKLLAKAKESAELANKSKNIFISNMSHEIRTPMN 484 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILGFS ++ + K Y+ ++ + LL+L+ + LDLS+IEAG+ + Sbjct: 485 AILGFSRLLSHTKLNN----QQKTYLSRAKKATKSLLSLLEDTLDLSKIEAGKLTIENIP 540 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 IV E +L+L A+EK + I +ID L + D ++QV++NL++NA+KFT Sbjct: 541 FQPKVIVTEITELLELNAKEKGLLIEYEIDEHLPKYLLGDPNRIKQVLINLINNAIKFT- 599 Query: 385 IGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G ++V+V S + D G GI + + + F Q + E G GL Sbjct: 600 QDGSIYVSVFVNSKNIHNCCVEFVVSDTGIGIKKENLADIFEHFTQVDNSTTKKEDGTGL 659 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I++ ++ GGQ ++S+ REG L Sbjct: 660 GLAISKELVKRMGGQIDVQSEYREGSTFSFEL 691 >gi|167034739|ref|YP_001669970.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166861227|gb|ABY99634.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 643 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + E + A + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + +Y S HLL +IN+ILD SRIE +L Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ + + ++ V D +RQ++LNL+ NA+KFT Sbjct: 339 NLGELITSSVQSFQHSAQQRGLGLHLELPAGFEQLQVNGDPTRIRQILLNLIGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W Q I S++D G GI + + +F Q +I G GL Sbjct: 399 R-GQVQVEARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFIAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL IA+++ GG+ S+ G +P Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLALATPAP 498 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 13/246 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHE+RTP+N ++GF++++ + P ++++ I SG LL++I++I Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367 L+ S++EAG EL E+ I + + E + L + EK IE+ IDP++ SV D Sbjct: 875 LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR--GQYISIKDNGPGIAEGEIPTV 420 + Q++LNLLSNAVKFT G V + V T + S++D G GI + + + Sbjct: 935 LHQILLNLLSNAVKFTEE-GEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRL 993 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 SF Q + G GLGL I+Q + GG+ + S + EG + + Sbjct: 994 FESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEEAEDG 1053 Query: 481 IPEDNH 486 D + Sbjct: 1054 AQTDKN 1059 >gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 769 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++++ Q E + ++ AE LAK FLA+MSHE+RTPL Sbjct: 71 QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+ E+I + ++ + S LL ++++ILD S++EA + EL + Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 +L +++ I +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+KFT Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242 Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + + ++D G GIA + + SF Q + G G Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044] gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 897 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 5/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K A E N AKS FLA+MSHE+RTP+N ILG +++ + +EY+ + S Q Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL++IN+ILD SRIE+G+ ++ + + V+ I A EK IE+ I P++ Sbjct: 315 SLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVP 374 Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +RQ++ NLL NA+KFT G + I+D G GIA + Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDNRWRFRIRDTGIGIAPEKQK 434 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + G GLGL I+ +++ GG+ + S+ G E LP Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVESQPGAGSEFAFTLPLE 491 >gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 443 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 9/309 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ + + + +S + + L+ L+++ ++ + + +L Sbjct: 92 IAVELMKAGATDYLSKFRVSSETLAQVLRNAMRLYRAEMQTAIAYQQLRESHEQLVRKNQ 151 Query: 234 LSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + E + KS+FLA+MSHELRTP+NAI+GFS+++ G L Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTG-Q 210 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I +G+HLL L+NE+LD S++E GR EL L ++ + ++ A+ K Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAK 270 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + +ID + D ++Q+++NLLSNA+KFT G + + V G I +K Sbjct: 271 KLSLLVQIDLQNPLLVNDPVRIKQILINLLSNAIKFTDS-GSIWIDVKDLPGSWVEIRVK 329 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA + + +F Q +I G GLGL I S++ G+ ++ S+L G Sbjct: 330 DTGIGIASKDFKYIFEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGS 389 Query: 467 EVIAILPNT 475 LP Sbjct: 390 IFTITLPRQ 398 >gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 607 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 108/426 (25%), Positives = 185/426 (43%), Gaps = 23/426 (5%) Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 + A + + + + V R LL + ++ Sbjct: 166 HGTLMAFSVASATLYAAGLAFGAESLARTSDTLLSVEEERYRLLALH--------MSDVI 217 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 + I + L+ L + L+ L V ++ P + + A + + Sbjct: 218 SRHSRNGAVQFISPAVETLLGLPAARLAGHGLFDRVHVADRPAYLKALSDAGLGGEGRSV 277 Query: 188 SLAGMLATA--------LSFFTYITYHLF------KSNVKILSCQAEKDDLIAELEVAKS 233 A F ++ +S+ + + + ++ + Sbjct: 278 EFRVRREVARDDRGRPTAPEFIWLEMRCRPFAPGTQSSAAGETGVVAVMRDVTDRKLQEQ 337 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ R A + +KSRFLA+MSHELRTPLNAI+GFS++I E L E KEY Sbjct: 338 ALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDELMLAPERRKEYAQL 397 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ SGQHLL+++N ILD+S++E+G +E+ + + C +L L+A+E IE+ + Sbjct: 398 INDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARENGIELVTR 457 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 L + D + +Q++LNL+SNA+KFT GG V V + R + ++DNG GIA Sbjct: 458 APEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAAVEAAR-LVLRVRDNGVGIA 516 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F Q + +G GLGL I +S++ HGG+ + S++ G V LP Sbjct: 517 AEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTSEVDRGTIVTISLP 576 Query: 474 NTRVLN 479 Sbjct: 577 LAPSAP 582 >gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 575 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F+A++SHEL+TPL +I GFSE + E +++ I + Sbjct: 345 ELKRLEKMRKDFVANVSHELKTPLTSIRGFSETLLDGA--KEVPELRDQFLDIIQKEATR 402 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + L+ ++L+LSR+E +++ ++ L +V E ++L +A +K+I++ K + ++ Sbjct: 403 MQMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTVV- 461 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + AD M+QVI+NL++NA+ ++ G RV + V + + + +KDNG GIAE E+ + Sbjct: 462 LQADLNRMKQVIMNLVANAINYSPEGSRVEIAVEAKADSYK-LRVKDNGIGIAEKEVSRI 520 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + I+ H + S+ +G P Sbjct: 521 FERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFPR 574 >gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 758 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 12/312 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKDDLIA 226 P L Q I S+ + I L + F + + + + ++ ILS ++ L+ Sbjct: 303 LPDKAILQVQDIWSVLIEPIYFYDQLVGFVGFDSVLEHRKWSEEDIDILSLFSKNVALVL 362 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + ++ + AE N+AKS FLA+MSHE+RTPLN I+G +++ + M N+ Sbjct: 363 ERKKSEERLIAAKLEAESANIAKSEFLANMSHEIRTPLNGIMGMLQLMRMGEM----NQK 418 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +E G S + L L+ +ILD++RIE+G ++ ++ L + + + + A +K Sbjct: 419 QEEQCGFAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFKPAAIQK 478 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----G 400 NI++ +I ++ + D + Q+ NL+ NA+KFT G V V Sbjct: 479 NIDLRVEIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDS-GFVLVEAYLLDRNQNGSYH 537 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D+G GI + ++ ++ SF Q + +G GLGL I + ++ GG I S Sbjct: 538 ILFSVSDSGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGTLSISS 597 Query: 461 KLREGVEVIAIL 472 ++ G + L Sbjct: 598 EINVGTSICFSL 609 >gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 597 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 3/230 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + +E KE I+ + Sbjct: 365 RLDKLRKDFVANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKEMAKVIYDESLRIGR 422 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG L + L+ + I Q A+EK I++ + + Sbjct: 423 LVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKNEDIQITM 482 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T G V + V SG G I ++D+G GI E ++P V Sbjct: 483 DPDRIEQVLTNLIDNAIRHTDKNGMVKIIVER-SGDGVTIHVQDSGSGIPEEDLPFVFER 541 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA++I+ H G + SKL EG LP Sbjct: 542 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLP 591 >gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 899 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G+ Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715 Query: 464 EGVEVIAILPNTRVLN 479 G LP V+ Sbjct: 716 TGTTFTFWLPLENVIQ 731 >gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 585 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 144/297 (48%), Gaps = 16/297 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 Y L + +++ A++ + R++AEE + KS FLA++SHE+RTPL Sbjct: 288 YPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPL 347 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF ++I + E +++ + H+ HLLN+IN+ILD+++IEAG+ EL + Sbjct: 348 NGMIGFLKLILEGM--ADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKMELVCA 405 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382 I L ++ + ++ +A+ KN+ ++ P V + + + QV+LN++ NA+KF Sbjct: 406 PIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKF 465 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG + VT + I D G G++ + + F Q + Sbjct: 466 THEGG-ITVTADVVLKKGKLQEQNFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRT 524 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL I+Q ++ GG+ S G V +P + + ++ ++ Sbjct: 525 RQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLYQQPVMLSSNDTDA 581 >gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri ATCC 29473] gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri ATCC 29473] Length = 902 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL +L I+ L + L V P+ ++T + LD + G L Sbjct: 147 VFISTLLLLFSLCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 200 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL++IN Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIIN 316 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + + E +I+L A EK +E+ +++ + V D Sbjct: 317 DVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDS 376 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 ++QV+ NLL NA+KFT G V + V S + I I+D G GI+E + + Sbjct: 377 MRLQQVMTNLLGNAIKFT-ENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLF 435 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ G S+L G + Sbjct: 436 QAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHI 486 >gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 875 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 210 SNVKILSCQAEKDDLIAELE----VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + ++ E L ELE +RA+ + KS FLAS+SHELRTPLN Sbjct: 585 TFASMVGLTIENVQLYNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPLN 644 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS V+ +T PL T +E + I+R+G+ LL+LINE+LDL+RIEAG L + Sbjct: 645 AIIGFSTVLLDDTEQPLT-PTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGS 703 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + E +Q + + + + + L V AD +RQ++ NLLSNA+KFT Sbjct: 704 VDLCQVTAEVCDTVQTLLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTER 763 Query: 386 GGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 G + V+ R +S+ D G GI + F Q +S G Sbjct: 764 -GTITVSAQVLDEVNEDGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQIHG-RRSRLGG 821 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHEST 489 GLGL I + ++ GG+ + S G LP + P++ + +T Sbjct: 822 TGLGLAITRKLVEAQGGRIWVDSIPGIGSTFTFTLPVAQPAFTTEPDEANVTT 874 >gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 917 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 769 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + +EL A S ++RAE N AKS FLA+MSHELRTPL Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANSNYQAEKERAEAANKAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG L Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I L ++ AD + M+QV+LNLLSNAVKFT Sbjct: 620 RIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTD 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V ++I D G GI + + F Q ++ G GLGL I Sbjct: 679 NGGRIAVRTRRV-DGAVVVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ + HGG+ IRS+ G + +P Sbjct: 738 SRSLTSLHGGRMKIRSREAVGTVISLRIP 766 >gi|5225252|gb|AAD40816.1|U59310_1 histidine kinase [Nectria haematococca mpVI] Length = 801 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 190 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 249 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 250 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTV 305 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 306 FDALKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 364 Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ + ++D G GIA+ ++ + +F Q ++ G GLGL Sbjct: 365 TIKERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLS 424 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG + S+ +G E Sbjct: 425 ISKRVVNLMGGDLWVISEQGKGSEFHFT 452 >gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 985 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 144/254 (56%), Gaps = 9/254 (3%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E + AE N AKS FL++MSH++RTP+NAI+GF+ + + E Sbjct: 453 DRKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKERV 509 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL +++ + ++ + K Sbjct: 510 RDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIHAKQ 569 Query: 348 IEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----- 401 +E++ +D + V+ D+ + QV+LNLLSNA+KFT GG V V + G + Sbjct: 570 LELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREYPGTQRGCELY 629 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KDNG G+++ + + + F + + S QG GLG+ I ++I+ GG ++++ Sbjct: 630 EIRVKDNGIGMSQKFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTE 689 Query: 462 LREGVEVIAILPNT 475 +G E I LP Sbjct: 690 QGKGTEFIIRLPLR 703 >gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404] gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404] Length = 1128 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 464 ALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 521 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 522 --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 579 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V+V Sbjct: 580 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSVSVK 638 Query: 395 WTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + G + + D G GI + ++ + +F Q + G GLGL I++ Sbjct: 639 KSDKVGEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQ 698 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S+ G Sbjct: 699 LIHLMGGEIWVTSEYGSGSNFYFT 722 >gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1877 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 14/334 (4%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 P + P A +++ ML L + + + KI + A Sbjct: 1550 PSFLPHPLLPETRAEMATPLIAGS--------MLLGVLDVQSDQSNIFTDDDRKIQTTLA 1601 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + + + T +R +E + KS FLA+MSHELRTPLN+ILGF+EVI Sbjct: 1602 SQIAIALQNARLFAEQTATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGIN 1661 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 GP+ N+ + IHR+G+HLLNLIN+ILD+++IE+G+ L +++++ E + Sbjct: 1662 GPI-NDLIHNDLSIIHRNGRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTV 1720 Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A +K++E+ I+P+L V+AD +RQV+LN++ NA+KFT G V + + T Sbjct: 1721 GPLATQKHLELLVDIEPNLKLPVYADRFRIRQVLLNIVGNALKFTEQ-GSVTIGIDTTP- 1778 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + I I+D G GI T+ F Q + G GLGLPI++ ++ HGG+ + Sbjct: 1779 TTRMIKIQDTGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSM 1838 Query: 459 RS--KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S EG LP + + + + Q Sbjct: 1839 VSSGNPGEGSLFTIELPINASEDEVNPNAAPANQ 1872 >gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 486 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 7/275 (2%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 K L+ L + + +AE N+AKSRFLA MSHE+RTP+N LG Sbjct: 73 EEKSLALFQANQVLEQRVSERTAELQAALVQAESANVAKSRFLAMMSHEIRTPMNGALGL 132 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +E+++ + Y+ +I +G LL+LIN+ILD S+IEA + EL + Sbjct: 133 TELLKSTPLNN----EQAGYVDNILMAGNALLSLINDILDFSKIEAHQMELERIPFNPRQ 188 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +V++ + + + +AQ K + + +D + D +RQV +NL+ NA+KFT+ G V Sbjct: 189 VVQDTLALFRTQAQAKGLVLHLDMDDHVPDHATGDPNRLRQVWMNLVGNALKFTSE-GEV 247 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + T + S+KD G G++ + + F QG +I G GLGL I ++++ Sbjct: 248 RIALLCTPEGLRC-SVKDTGIGMSAEVMSQLFEPFKQGDSSISRKFGGTGLGLVICKALI 306 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G ++S G E L + PE Sbjct: 307 DQMGADLQVQSTPGVGTEFSFTLSPAALGLSAPEA 341 >gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 1007 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E E E + +AE+ + KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E +YI I+ + + LL LIN+ILDLS++EAG EL L + ++ Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 R + +I + + V D + Q+I N ++NA+K+T+ G + +G+ Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G Y +KD G GIA+ + V F + QG GLGL I ++I GG+ Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S EG A LP + E+ E Sbjct: 844 SVHNEGSLFWAFLPCEVDTLSMVEEKKEEN 873 >gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 950 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 19/274 (6%) Query: 231 AKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + S +++ +E N AK+ F+A + HE+RTPLNA+ G + ++ + N +E Sbjct: 268 KELESQMAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQEE 323 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I SG++LL +IN ILD S+IEA + EL E L + E + + +A +K +E Sbjct: 324 FVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLE 383 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------ 396 + I+P+ ++ D +RQ++ NLL NAVKFT G V V V Sbjct: 384 LAYLIEPNTPSAIVGDSTRLRQILANLLGNAVKFTEK-GEVVVYVSAQPLPNSDRTDKTL 442 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + ++KD G GIA + + F Q + G GLGL I+Q + GG+ Sbjct: 443 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 502 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S +G + + P + + Q Sbjct: 503 WVHSTEGKGSTFYFTIQAQATPSSSPATSQQGQQ 536 >gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] Length = 1007 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E E E + +AE+ + KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 616 RVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMA----- 670 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E +YI I+ + + LL LIN+ILDLS++EAG EL L + ++ Sbjct: 671 YAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 R + +I + + V D + Q+I N ++NA+K+T+ G + +G+ Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS---IKMGYACKDG 787 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G Y +KD G GIA+ + V F + QG GLGL I ++I GG+ Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDE----FAQGTGLGLSICKAIAEAMGGKVGFE 843 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S EG A LP + E+ E Sbjct: 844 SVHNEGSLFWAFLPCEVDTLSMVEEKKEEN 873 >gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] Length = 1338 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 8/296 (2%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + G + + + L K +K+ ++ + + ++ + Sbjct: 759 FWDTWWFKVLVGLGFVLLVYGIVKWRSQQLIKDKLKLEQVVVQRT--FELAQQKEEIASQ 816 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ +E + KS F +++SHELRTPL I+G +E I + + I + Sbjct: 817 A-EKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTTT----QSHSKSILSN 871 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL LIN++LD S++E+G+ L ++ I +L A +KNI + + Sbjct: 872 AQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNIGLKLLLHQE 931 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 D + +V NLLSNA+KFT G V + V I + D G GI + Sbjct: 932 EIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEE-MVQIKVSDTGIGIPPQSL 990 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 P + F Q + +G G+GL + + ++ HGG S++ +G LP Sbjct: 991 PFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTTFFIQLP 1046 >gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 769 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 14/286 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++++ Q E + ++ AE LAK FLA+MSHE+RTPL Sbjct: 71 QRLEEADLARERLQQELRRHGEL----EQELLRAKQAAEAATLAKGEFLATMSHEIRTPL 126 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+ E+I + ++ + S LL ++++ILD S++EA + EL + Sbjct: 127 NGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEIT 182 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 +L +++ I +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+KFT Sbjct: 183 TFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFT 242 Query: 384 AIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + + ++D G GIA + + SF Q + G G Sbjct: 243 ER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTG 301 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 302 LGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 13/282 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E K ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGG------RVHVT-----VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 T G + ++ + S IS+KD G GIA+ + + +F Q A Sbjct: 630 TEKGSVSLHFDSIEISNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGAT 689 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + G +P Sbjct: 690 IRKYGGTGLGLSICKEFARLLGGWITLESHVGAGSTFTVYIP 731 >gi|170708012|ref|ZP_02898461.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0389] gi|170127172|gb|EDS96050.1| sensor histidine kinase/response regulator [Bacillus anthracis str. A0389] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 T L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 TEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 637 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 258 HDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + +V E + +L+ Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +++ + D + QV+ N LSNA+K T G + + Sbjct: 374 MKK-GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 431 LYVTDTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486 Query: 463 REGVEVIAILPNTRVLNFI 481 +G I LPN +V + Sbjct: 487 GQGSTFILYLPNRQVQEVV 505 >gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 775 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 109/269 (40%), Positives = 149/269 (55%), Gaps = 2/269 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + V + QA + EL E + RAE+ N KS+FLA+MSHELRTPLN Sbjct: 496 RLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRAEDANQTKSKFLANMSHELRTPLN 555 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ G L +E Y+EY DI SG +LL +IN+ILD+S+IEAGR +L Sbjct: 556 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEP 615 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L + E + ++ RA K + + ID + V AD + ++Q+++NLLSNAVKFT Sbjct: 616 FDLATTLSESLRVVSGRADNKQLMLRADIDNDIP-VLADRRAIKQILVNLLSNAVKFTPD 674 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGRV V G + I D G GIA+ + + F Q + G GLGL IA Sbjct: 675 GGRVTVR-GRVFEEQIVLLIADTGIGIAKQSLRRLGQPFEQVESQLTKTYHGSGLGLAIA 733 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 +S+ HGG +RS+L G V LP Sbjct: 734 KSLTNLHGGSMRLRSQLGVGTVVRVALPR 762 >gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1] gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata] Length = 547 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 11/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ ++ +F + + +D+ E A+ + ++AEE N AKS FLA+MSH Sbjct: 2 FWARVSARVFATPDHRNAVLGVLEDITPSYE-ARQAIEHAHQQAEEANRAKSSFLANMSH 60 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G S +++ + NE + Y+ I S QHLL +IN+ILD S+IEAG+ Sbjct: 61 EIRTPMNAIMGMSYLVQKTEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGK 116 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 + L ++ ++ +A K +E+ +D + + D + Q+++N + Sbjct: 117 LGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYAN 176 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + V + +++D G GI+E + + SF Q + Sbjct: 177 NAVKFTER-GEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTR 235 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + G+ + S +G Sbjct: 236 KFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 273 >gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1] Length = 939 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 21/366 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALS 198 Y SATL + L+ F L P+ ++ + I H + + Sbjct: 175 YLSATLGTFFIFNLLAIFALLNVTASLLRPIEKISDTVNKITQGHFGATKGLNLPTQYST 234 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSR 251 + + + + D ++ +E K A E N KS+ Sbjct: 235 VVSDLNDISSRLENHRAEILSNVDQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQ 294 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHE+RTPLNAI+G+ ++++ + + ++ + Y+ I +S +LL +I++ILD Sbjct: 295 FLANISHEIRTPLNAIMGYIQILQKDQL----DKQQRLYMDTIAQSTTNLLTIISDILDF 350 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQ---LRAQEKNIEIFQKIDPSLS-SVWADEKG 367 S+IEAG+ L + I++ DIV E +L L K +++ + D + V D Sbjct: 351 SKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVR 410 Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +RQV+ NL+ NA+KFT G V + S I D G GI E ++ + F Sbjct: 411 IRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPF 470 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPNTRVLNFIP 482 Q + G GLGL I + ++ GG + S+ G +L ++ + Sbjct: 471 SQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNFRFTIVLKPSQKEQKVE 530 Query: 483 EDNHES 488 + +S Sbjct: 531 DPISKS 536 >gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 631 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ +E R +AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 387 IHILKKTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQ----VEDK 442 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY I + LL LI++ILD+S+IE+G Y+ + + ++ E + +LR + Sbjct: 443 EEMKEYADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIK 502 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + ++ D+ + QVI+NLL+NA+KFT GG + + Y Sbjct: 503 SEELVLTFDEQLPQCILYTDKNRLTQVIINLLTNAIKFT-SGGEIRMGYRLKDAATLYFY 561 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + QG GLGL I++ I+ GG+ + S++ + Sbjct: 562 VSDTGCGMSTEQCEHVFERFVK----YNPFIQGTGLGLSISRMIIEKLGGEIGVTSEVGK 617 Query: 465 GVEVIAILP 473 G LP Sbjct: 618 GSLFWFTLP 626 >gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 785 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTPLN+ILGF+E++ E + E+ +E+ G I RSG+ LL LIN+I Sbjct: 554 KAAFLANMSHEIRTPLNSILGFAELL-DEQLAASGQESLREFTGIIQRSGRRLLRLINDI 612 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L+LSR+EA R L +L IV+E + L+ A +K + + + + V D + Sbjct: 613 LELSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEA-VPPVLGDPHRL 671 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425 Q++ NL+ NA+K+T G V V V T+ G + + D GPGI +P + F Sbjct: 672 HQIVTNLVGNALKYTEQ-GEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQ 730 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + +G GLGL I + ++ G+ + S G P Sbjct: 731 RA-PSENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFPA 778 >gi|254444196|ref|ZP_05057672.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198258504|gb|EDY82812.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1220 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 19/328 (5%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + + + +L L HL K + + + L Sbjct: 740 SIPIGIAPALYRTLPAYMAYVVLGGVLISLILKFRHL-KLLNRQRQLEEKVILQTKALRE 798 Query: 231 AKSLSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +KRAE N AKS FLA +SHE+RTP+N I+G ++ + + Sbjct: 799 KNIQLHGAFLSERGLKKRAERANQAKSEFLAMVSHEIRTPMNCIIGMTDNLLATPL---- 854 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + E + +H SGQ L+ +I++ILD S+IEAG+ EL S V++ + Sbjct: 855 QKEQFEMLQAVHASGQSLVAIISDILDFSKIEAGKIELDSVPFSPEQTVKDVFNLFVRSC 914 Query: 344 QEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401 EKNI + I + + D ++QV++NL+ NA KFT G + + Sbjct: 915 DEKNISLRTDISDEVPDIAIGDPIRLKQVLINLVGNARKFTDQGLITISLNQQINDDGSL 974 Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++ D G GI + + +F Q + G GLGL I + ++ G + Sbjct: 975 TLIYTVTDTGIGIESANMDLLFKAFSQIDSSNTRKFGGTGLGLAICKRLVNLMNGDIGVS 1034 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487 S+ G + + P++ + Sbjct: 1035 SQTGHGSTFSFTI---KTRKATPQETQQ 1059 >gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1070 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 5/255 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R++AE+ + KS FLA+MSHELRTPLNAILG+SE+++ + Sbjct: 544 ITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQ 603 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + IH +G+HLL LIN++LD+S+IEAG+ ++ +++ +VR+ + + Sbjct: 604 EMVGD-LAKIHSAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLVR 662 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 + + +L ++ D +RQ++ NLL+NA KFT G + + V R Sbjct: 663 KNKNHFHLECGQNLGAMHTDLTKVRQILFNLLNNAAKFT-QNGSITLRVQCQEDREIPTI 721 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G GI + + ++ SF Q ++I G GLGL I+QS GG SK Sbjct: 722 SFQVIDTGIGIEQQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSK 781 Query: 462 LREGVEVIAILPNTR 476 G LP R Sbjct: 782 PGAGSTFCLTLPLIR 796 >gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] Length = 917 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 896 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia] Length = 917 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 161/373 (43%), Gaps = 22/373 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALS---------ISALSNFMLPYAVFLSFFP 169 L W + L GT Y +++ S L+ +S N + Sbjct: 149 LGWVEIELSHDGTLLRGYRSLFTSMLLIFCGLAATALLALRMSRTINDPIGQIKHAVTQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L + + LA + L S + + + I E Sbjct: 209 KDGNLEERLPVMGSYEMDELAAGINRMAETLHNAHEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSASSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + I + Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICV 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 QDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 + LP R Sbjct: 502 SQFWVSLRLPKAR 514 >gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 629 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ +++ + +++AEE + KS F+A+MSHE+RTPLNAI+GFS ++ + Sbjct: 380 ITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL----PYMEDA 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + YI I+ + + LLN+INE+LDLS+IEAG EL+ SL +++ E + Sbjct: 436 KEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVP 495 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + ++ S + D ++Q++ NLLSNA+K T G V V+ IS Sbjct: 496 E-GVTLKKRYPASPCLIEQDSMRIKQILSNLLSNALKNTTQ-GYVEVSYETEQSG-VKIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + ++ + F + I QG GLGL I +SI+ G + S L E Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKADSYI----QGAGLGLSICKSIIEQMNGTIEVASVLGE 608 Query: 465 GVEVIAILP 473 G P Sbjct: 609 GSTFTVTFP 617 >gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 815 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 10/249 (4%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E R RA N AKS FLA+MSHE+RTP+N ILG + V+ + + + + I Sbjct: 410 LIEARDRANAANRAKSDFLANMSHEIRTPMNGILGMARVLADKDL----PDDVNSKLDVI 465 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK- 353 RSG L++L+++ILDLS+IEAG+ EL E+ L I + + A +K + + + Sbjct: 466 VRSGDTLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEV 525 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNG 409 D S D + Q+ NL++NA+KFTA G+V +T+G T+ + + D G Sbjct: 526 TDRDGVSRHGDPLRLSQIANNLVANAIKFTAS-GKVRMTLGPTADGPDSDMIELVVSDTG 584 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G++E + ++ F Q + G GLGL I + + GG + S +G Sbjct: 585 IGMSEAQCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTFT 644 Query: 470 AILPNTRVL 478 LP V+ Sbjct: 645 VRLPLAPVI 653 >gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 446 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 9/309 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI----LSCQAEKDDLI---A 226 ++ + + + + + + L+ LF++ +K + + LI Sbjct: 92 IAVELMKIGATDYLLRSQLFSENLTRILRNAIKLFQAEIKADLAYQQLKESHEQLICKNQ 151 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ELE + R E + K++FLA++SHE RTP+NAI+GFS+++ G LN++ Sbjct: 152 ELERQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQLNSQQ 211 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I +G+HLL L+NE+LD S++E+GR EL + L IV + + A+ K Sbjct: 212 V-DMVERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAK 270 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + + D + ++ D +RQ+++NLL+NAVKFT GG + V V + I+I+ Sbjct: 271 KLSLVVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGG-IWVEVKEITQNRLTITIR 329 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+ + + +F Q I G GLGL I S++ GG+ + SKL G Sbjct: 330 DTGIGISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGVGS 389 Query: 467 EVIAILPNT 475 LP Sbjct: 390 IFKIELPRQ 398 >gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] Length = 640 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 166/330 (50%), Gaps = 14/330 (4%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + +L + +VV++ + ++ + + + + + SN + Sbjct: 318 IKHIILWVGLVAFLMALVVSVIINSTITRPIKKLKKGVEMMGKGDYNFRVN---INSNDE 374 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNA 266 + + E++ ++ + ++ E + + KS ++ +SHELRTPL + Sbjct: 375 FEELAHAFNKMADEIKSSQEKLKKQAEKLEISYNELKKLDKFKSEIISIVSHELRTPLTS 434 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G+ E++ TMG + NE+ K + + + L LI+ +LDLS+IE G ++ S + Sbjct: 435 IKGYVELVLDGTMGTI-NESQKRCLEIANENIDRLKRLIDNMLDLSKIERGELKMDISKV 493 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 +L DIV+ + L+ A KNI+I K++P +++ D+ + V+ NL+ NA+KF+ + Sbjct: 494 NLNDIVQNVVHSLKPLADGKNIKIINKVEPITANL--DKDKITGVLTNLIENAIKFSPVN 551 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V + + +I++KDNGPGI + E+ + F Q + + K + G GLGL I + Sbjct: 552 ENVTIEA-FKENNMVHITVKDNGPGIPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICK 610 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476 SI+ +HGG+ + SK + +LP + Sbjct: 611 SIVESHGGKIWVESKFGKESTFHILLPLDK 640 >gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 589 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + L + F+A++SHELRTPL +I GF E + T+G ++ + Y+ IH+ Sbjct: 354 ELRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGE--SQARERYLKVIHQETLR 411 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LINE+LDL++IE+G+ + I + +V I+ L+ + + I + ++ L Sbjct: 412 LNRLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPL 471 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + +E + QV+ NLL NAV+++ G V V + + D GPGI ++P + Sbjct: 472 MLGNEDRIEQVLTNLLENAVRYSPPGSTVTVRAA-GREGKITVEVADRGPGIPPEDLPHI 530 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + + G GLGL I + I+ HGGQ ++S+ +G L Sbjct: 531 WERFHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQGSVFSFTL 582 >gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 752 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 108/423 (25%), Positives = 162/423 (38%), Gaps = 17/423 (4%) Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + + + LA+ + L ++ + E R W L Sbjct: 55 AFAIGVSFLFALACVALAILSMRLRWMRRKLRKISLHNETLADRNWELKE--------AE 106 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAIMS 181 + + + + L+ +++ + A L F V+ AI S Sbjct: 107 ERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQGESAIES 166 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 A + + + Q D+ E + E R Sbjct: 167 NGTRIHDQRVETALGPRWIAWREGLVRIDANHPAELQCVGRDVTNRTET-EYALGEARDH 225 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A N AKSRFLA SHE+RTPLN I+G S ++ ++ P Y+ + SG L Sbjct: 226 ANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDTSLTP----EQTTYVKAVKASGDAL 281 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L+LI E+LD SRIEAG+ +L L D++ + +L RAQ + +EI ID L Sbjct: 282 LSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQLEIAAYIDEQLPIE 341 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D +RQ++LNL NA+KFT GG + T ++D G GI V Sbjct: 342 VIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQDTGIGITPDAQARV 401 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q I G GLGL I+ I+ GG+ + SK G +P + Sbjct: 402 FREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGSTFEVSIPL-PAHDS 460 Query: 481 IPE 483 PE Sbjct: 461 PPE 463 >gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division OP8 bacterium] Length = 350 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 163/320 (50%), Gaps = 18/320 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F A L + + +++ + A + Y+ + + L+ Sbjct: 40 FFAVGAGLLCTLAIFQKTAMGEDVALLRGYVLPFFFGGGAAALVGYLNRRSRRHLMARLN 99 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 QAE+D L++ + AKS +A+MSHELRTPLNAILGFS I+ Sbjct: 100 AQAERDILLS------------------ASRAKSEVIANMSHELRTPLNAILGFSSAIKC 141 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ET GP+ + Y+EYI DI SG HLL+LIN+ILD+S IEAG+ L E +I++ I +E Sbjct: 142 ETFGPMGHTKYREYIDDISHSGSHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAF 201 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +++ A E + + I +L ++ DE+ +Q++LNL SNA+KFT GG V + + Sbjct: 202 HVVECLAVENQVMLAYDIAENLPPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLD 261 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +S+ D G G++ E+ LT FGQ + + G GLGLP+ + ++ H G Sbjct: 262 DQGRHTLSVTDTGIGMSADELKNALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTL 321 Query: 457 LIRSKLREGVEVIAILPNTR 476 I S G V + P TR Sbjct: 322 DITSTKGTGTIVTVVFPATR 341 >gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 579 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 436 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYSLEDE 494 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 550 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 551 ESREGEGSCFWFTHP 565 >gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1255 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 143/257 (55%), Gaps = 13/257 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 DD+ E E A R AE + AKS+F+ASMSHE+RTP+N ILG +E++ +G Sbjct: 571 DDVTDERERALQ-LQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELL----LGT 625 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + + ++RSG++LL +IN++LD S+IEAGR EL+ + +L ++ + + +L Sbjct: 626 RLDDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAP 685 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 RA EK +E+ + + + V AD +RQV+ NL++NAVKFT G V V + + Sbjct: 686 RAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFT-EHGEVTVDLRFLPRPR 744 Query: 397 --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + ++D G G+A +P + T+F Q + G GLGL I++ ++ GG Sbjct: 745 AGAPAMLEFRVRDTGIGMAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGG 804 Query: 455 QFLIRSKLREGVEVIAI 471 Q + S+ G E Sbjct: 805 QIDVVSQPGVGSEFRFT 821 >gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 882 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 882 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 882 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 882 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + ++ +K+D + + + A++ + +++AEE + KS FLA+MSH Sbjct: 479 YLHILANPVLDEHDNLIGVIFKKED-VTKQKQAENELRKAKEKAEESDRLKSAFLANMSH 537 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS ++ N E +EYI I+ + LL LIN+ILDL++IEAG Sbjct: 538 EIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGT 593 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E +S + + + + +L+AQ+ F + P+ + D + QVI N ++N Sbjct: 594 LEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPN-CILRTDRNRVSQVITNFINN 652 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT G + Y +KD G GIA+ +I V T F + S QG Sbjct: 653 AIKFTTQGS--ILFGYRHRDDELYFYVKDTGCGIAKDKIGQVFTRFVKL----NSFVQGT 706 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHES 488 GLGL I Q I+ GG + S+ +G LP + + + +P + ++ Sbjct: 707 GLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILEMQEVPHEKPKT 757 >gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1575 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 34/297 (11%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + +L +E + A+ ++ AE N +KS FLA+MSHELRTP Sbjct: 1045 SKTWNQEEINLLQLVSELIAIGRSRHKAEEALRIAKETAETANRSKSAFLANMSHELRTP 1104 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGF++++E N+ ++ + I+RSG+HLLNLIN++L++S+IEAGR L+ Sbjct: 1105 LNAILGFAQLMER---DTTLNKRQRDSLATINRSGEHLLNLINDVLEMSKIEAGRIVLNP 1161 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 ++ L +++E M Q+RA++K + + ++ P+L + DE +RQV++NLL NA+KF Sbjct: 1162 TSFDLHRLLQEMQQMFQVRAKDKKLSLSFELAPNLHQYILTDESKLRQVLINLLGNAIKF 1221 Query: 383 TAIGG---RVHVTVGWTSGRGQY--------------------------ISIKDNGPGIA 413 T GG RV + +G RG+ I+D G GI Sbjct: 1222 TNTGGVTLRVSLGIGEQGSRGEVALSLSPLPLCPSAPLPLVPNSQSLISFKIEDTGLGIP 1281 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 E+ + F Q + A + +G GLGL I++ + GG + S + G Sbjct: 1282 TEELDNLFQPFVQTASARQ-VMEGTGLGLTISRQFVQLMGGDIRVHSVVGSGSTFYF 1337 >gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 589 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + +A++SHELRTPL +I GF E I T+ + E + Y+ IH+ L LI E+ Sbjct: 362 RRDLVANVSHELRTPLTSIRGFIEAILDGTIS--DPEAQRHYLKVIHQETVRLTRLIREL 419 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDL+++EAG+ I + ++V + L + ++ I + I SL + A+E M Sbjct: 420 LDLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRM 479 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV+ NL+ NA++++ G V V G + I + D GPGI E ++P + F + Sbjct: 480 EQVLTNLVENAIRYSPPGKTVTVKAG-SDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVE 538 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + G GLGL I + I+ HGG+ + S+ +G +P Sbjct: 539 KSRSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPA 584 >gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1022 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 13/261 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +D+ R+ AE +LAKS FLA MSHE+RTPLNA++G +E+ E M N+ K+ I Sbjct: 335 EADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKM----NQNLKKIIET 390 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I L+ L+N ILD S+IEA + EL E L ++ + + L A +K +E Sbjct: 391 ITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKKGLEFILH 450 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409 I+P + V D +RQV+ NL+ NA+KFT+ G + + I+D G Sbjct: 451 INPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVKAELETRTDEKAIIKFHIQDTG 510 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E + + +F Q + G GLG I++ I+ GG+ + S+ G Sbjct: 511 IGIPEEKRGLIFEAFTQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESREGCGSIFW 570 Query: 470 AILPNT-----RVLNFIPEDN 485 + RV PE + Sbjct: 571 FTVVLALQQVKRVPVISPEYD 591 >gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] Length = 1043 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 9/277 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 T I + ++L E+ S E R RA KS FLA+MSH Sbjct: 268 LVTSIKEMAASLRQSYSRLEEHGNELEHEVARRTSQLAEARDRALAAAQVKSDFLANMSH 327 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NA++G S + + ++Y+ I + + LL +IN+ILD S+IEAG+ Sbjct: 328 EIRTPMNAVIGLSHLAREQAESH----QQQDYLNKILAASKSLLIIINDILDFSKIEAGK 383 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + D ++ + L A K ++ + P L + D + QV+LNL++N Sbjct: 384 MHMETVVFDFDDTLKNIAGVGGLEAGRKGLDFLFDVPPQLPKLRGDPVRLGQVLLNLVNN 443 Query: 379 AVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 A+KFT+ G V VTV S+ D G G+++ ++ + +F Q +I Sbjct: 444 AIKFTSR-GEVIVTVKILAMDEHETELSFSVSDTGIGMSQEQLAGIFDAFSQADTSITRK 502 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + +++ G+ + S EG Sbjct: 503 FGGTGLGLAICKQLVSMMQGEIGVESTPGEGSRFYFT 539 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 13/246 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHE+RTP+N ++GF++++ + P ++++ I SG LL++I++I Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367 L+ S++EAG EL E+ I + + E + L + EK IE+ IDP++ SV D Sbjct: 875 LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR--GQYISIKDNGPGIAEGEIPTV 420 + Q++LNLLSNAVKFT G V + V T + S++D G GI + + + Sbjct: 935 LHQILLNLLSNAVKFTEE-GEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRL 993 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 SF Q + G GLGL I+Q + GG+ + S + EG + + Sbjct: 994 FESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEEAEDG 1053 Query: 481 IPEDNH 486 D + Sbjct: 1054 AQTDKN 1059 >gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 437 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 150/304 (49%), Gaps = 5/304 (1%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + L + + D LA + A + +AE+ + EL Sbjct: 126 IGTLCLGDRQARTLSDAELATLQELAEVVVDEFELRRANQRLDEERARAERSAI--ELRR 183 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + R+ AE N AKS+FL+SMSHELRTPLNA+LGF++++E + PL+ E Y Sbjct: 184 INLELQQAREEAERGNRAKSQFLSSMSHELRTPLNAVLGFAQILEQDPREPLS-ERQAGY 242 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I G+HLL+LI++ILDLSR+EAGR EL ++ +V +C +L A + + + Sbjct: 243 VDQILGGGRHLLSLIDDILDLSRVEAGRVELKPEWVAPGLLVDQCAELLGPMATDAGVHL 302 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + ++ + +W D + +RQV+ NL SNAVK+ GRV V V + ++D G Sbjct: 303 SVYVAEAVPASIWVDPRRIRQVLFNLASNAVKYNRPDGRVEVEVEAPAPDRIRFRVRDTG 362 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E V F + + S +G G+GL + + ++ GG+ S G Sbjct: 363 IGIREERQREVFYPFNRLGL-ESSEVEGTGIGLVVTRRLVEQMGGEIGFSSAPGVGSVFW 421 Query: 470 AILP 473 LP Sbjct: 422 VDLP 425 >gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187] gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187] Length = 896 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 631 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 9/260 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +L A I L A + E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 377 LLILIAAIAYYIRILRKAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNM 436 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + +EY I + LL LIN+ILD+S+IEAG ++ S I + + Sbjct: 437 L----PDIEDRKEMREYADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTME 492 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 E ++LR +++ + + +++ D+ + Q+I N + NA+KFT G + + Sbjct: 493 EIEQSMRLRLKKETVTLTFTERLPECTLYTDKNRLIQLISNFVINAIKFT-QIGSIRMGY 551 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + D G G++E + V F + QG GLGL I Q I+ G Sbjct: 552 RLKDADTICFYVSDTGCGMSEEQCRHVFERFVK----YNPFVQGTGLGLSICQMIIDRLG 607 Query: 454 GQFLIRSKLREGVEVIAILP 473 G + S+ +G LP Sbjct: 608 GTIGVESEEGKGSTFWFTLP 627 >gi|330446361|ref|ZP_08310013.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490552|dbj|GAA04510.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 971 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 111/383 (28%), Positives = 174/383 (45%), Gaps = 29/383 (7%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL-----SFFPVVVALSTQAIMS 181 V+ I SA L+AL + + + + I Sbjct: 328 VDHTLTLARNTLIVISAIGLMALVLIMWRFVYARVICRINEYSRALSALTRGDLGVRINV 387 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSN----VKILSCQAEKDDLIA----ELEVAKS 233 +++ G Y L ++ ++ +A + L+A ELE S Sbjct: 388 RGDDELAQMGRAILVARDTANERYRLAQAESKARQELQQHKASLERLVAKRTGELEKINS 447 Query: 234 LSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +E R AE+ N AKS FLA+MSHE+RTP+N +LG + ++ + P Sbjct: 448 RLNEEVYNHYKARDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQLTP----Q 503 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K Y+ I+RSG+ LL+++N+ILD S+IEAG ++ S S+ +V + ML+ RA K Sbjct: 504 QKRYLDVINRSGETLLDILNDILDYSKIEAGHLDIRPSDFSVSRMVTDVANMLEGRALAK 563 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYI 403 I + I P + +W DE +RQV++NL+ NA+KFT G+V +TV Sbjct: 564 RIGLEYHIAPEVEGMWYGDESRIRQVLVNLVGNAIKFT-DNGKVSITVEPHPDMPDELLF 622 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D G GI E E + +F Q KS +G GLGL I++ I+A G+ + S + Sbjct: 623 SVRDTGIGIDEEEQNLLFNAFKQAEAGRKS-IEGTGLGLAISKHIVAAMDGEIGLDSVVG 681 Query: 464 EGVEVIAILPNTRVLNFIPEDNH 486 EG LP + D+ Sbjct: 682 EGSCFWFALPLEHGEGTLESDDQ 704 >gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 1003 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 149/318 (46%), Gaps = 31/318 (9%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 +T L +++ + I++ + A+ + AE+ N+AKS FLASM HELRT Sbjct: 682 LTVSLLRNSDGTPRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHELRT 741 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNA++GFSEV+ + GPL N EY+ DI SG+HLL LIN+ILDLS++EAG Sbjct: 742 PLNAVIGFSEVLLDQFFGPL-NPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWMRFL 800 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW--ADEKGMRQVILNLLSNAV 380 L ++ E + + +EK I + + + S + +D ++Q+ +LLSNA Sbjct: 801 PVPTPLDSVMGESLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLSNAA 860 Query: 381 KFTAIGGRVHVTVGWTSG--------------------------RGQYISIKDNGPGIAE 414 KFT GG + +T S G I I+D G G+ Sbjct: 861 KFTPKGGTITITGKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTS 920 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 G + SF Q I G GLGL +A+ + H G+ + S L +G +P Sbjct: 921 GHSDKIFESFFQVEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYFTIP 980 Query: 474 NTRVLNFI-PEDNHESTQ 490 + PE+ TQ Sbjct: 981 LALDEESLHPEEQLSKTQ 998 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 11/257 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + EL+ A + + +AE + KS FLA+MSHE+RTPLN I+G +++E ET Sbjct: 244 RDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESET---- 299 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EY+ ++ + L N++++ILDL+R+EAG+ L + D ++ + ++ Sbjct: 300 QTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVT 359 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 ++ + + K+ P L +V D ++Q++ N++ NA+KFT G V +T Sbjct: 360 SRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKFTHE-GHVLITAQLLPRSTP 418 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++D G GIA+ ++ + SF Q S QG GLGL I + + GG Sbjct: 419 GNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTI 478 Query: 457 LIRSKLREGVEVIAILP 473 + S + +G +P Sbjct: 479 AVESNVEQGTTFYISIP 495 >gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 22/312 (7%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---------- 248 + + + + DL A A+ +D R +A E + A Sbjct: 138 LYELLEERANHLEKAQVELRKYATDLEAAKRQAEDQADLLRAQARELSKAREAAEKAAAI 197 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S FLA+MSHE+RTP+N ++G +E++ +G E +EY+ I SG+ LL LIN I Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELG----EEQREYVDTIRNSGEALLGLINNI 253 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LDLS++EAG+ L ++ + + +L +A EK IE+ + + + D Sbjct: 254 LDLSKLEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSR 313 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTS 423 +RQV+LNL+ NA+KFT G V + V +S S++D G GI E + + Sbjct: 314 LRQVLLNLVGNALKFT-ANGTVRLRVTLMNTSSSEAVLRFSVRDTGVGIDEEQQKRLFKP 372 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q A+ G GLGL I+Q I GGQ L+ S+ +G E L L E Sbjct: 373 FSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLESERDKGSEFSFAL--RFKLPEKDE 430 Query: 484 DNHESTQYKCYA 495 + E+ + + A Sbjct: 431 EVSEAPKEEIRA 442 >gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 682 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 156/314 (49%), Gaps = 15/314 (4%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYIT----YHLFKSNVKILSCQAEKDDLIA 226 +V + TQ + + + + G++ + L +++ E+ + Sbjct: 277 LVGIVTQTGLLRLLDPLEIFGVIEALQRSVHQLEAEKMELLQGRTLQLERLVEERTAQVQ 336 Query: 227 ELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 E A++ ++ R+ AEE N K FLA++SHELRTPLN I+GF++++ G L Sbjct: 337 EQARREQLARAAAESARQEAEEANRIKDEFLATLSHELRTPLNPIIGFTQLLRK---GQL 393 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + I R+ + +I ++LDLSRI G+ L ++L +V + + ++ Sbjct: 394 DEASAARALETIERNARAQSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFA 453 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 AQ KNIE+ ++DP++ + D +RQV+ NLLSNA+KFT G + V + Sbjct: 454 AQSKNIELRARLDPNVVLPFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLER-GRAEAV 512 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++++D+G GIA +P V F Q + + G+GLGL I + ++ HGG + S Sbjct: 513 LTVRDSGVGIAGDFLPHVFERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVES-P 571 Query: 463 R--EGVEVIAILPN 474 +G LP Sbjct: 572 GSDQGATFTVRLPL 585 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 10/269 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I+ + + ++ LE + + R A E K F AS+SHELRTPLN ++G E Sbjct: 237 DIMDMEGAFNTMMTVLEAREQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLE 296 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + P +EY+ SG+ LL+LI ILD SRIE+G+++L L + + Sbjct: 297 LLSNTELTP----NQREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETL 352 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + I +L +AQ K++EI + ++ + D +RQ+++NL+ NAVKFT G V + Sbjct: 353 DDVIGLLAAQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQ-GEVSI 411 Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + ++D G GI + V +F Q + G GLGL I + Sbjct: 412 EVRLLEKKAKKLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQ 471 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ GG + + L +G +P Sbjct: 472 LVDLMGGDLGVENNLDKGSLFWFTVPLEE 500 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 166/352 (47%), Gaps = 11/352 (3%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 ++ + I + A + A+ ++ A V+ ++ +A V Sbjct: 257 LDRDAPAYMTIFIGMPEAAIGADARKAMGTGLVLSACAAVLALVMAWVAERAFFMPRVRA 316 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + +A + T + + +L+ + D + E +VA + AE+ + Sbjct: 317 LVMAAERFRIGDYGTPTGVNHDAGELGLLA--SALDRMAQERQVAVDALRAAKDAAEDAS 374 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +KS FLA+MSHE+RTPLN +LG +++E + +EY+ RS L L++ Sbjct: 375 RSKSEFLANMSHEIRTPLNGVLGMLQLLESGR----PSAEQREYVETAIRSTNRLTRLLS 430 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILDLSRIE+ + + E + ++ D+ + + + + A+EK + + ++DP + ++ DE Sbjct: 431 DILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKGVRLEVRVDPRIPAHLFGDE 490 Query: 366 KGMRQVILNLLSNAVKFTAIGGR----VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 +RQ++ NL+ NAVKFT G V V+ S +++D+G GI + + Sbjct: 491 ARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIRFTVQDSGVGIPSERLKDIF 550 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q + + QG GLGL I + ++ GQ I+S EG V LP Sbjct: 551 EPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQGEGTLVGVTLP 602 >gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 695 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 12/243 (4%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R E + KS FL+ +SHELRTPL +I+G++E++ P +E++ ++ H Sbjct: 451 REREADRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSP---AERREFVQTVYNEANH 507 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L ++ ++L ++R+EAG L++ A+SL IV + L + K+ + I P L Sbjct: 508 LYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTML-IDIPPHLPP 566 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--------WTSGRGQYISIKDNGPGI 412 V+AD +RQV++NL++NAVK++ GG + +T+ G+ +++ D G GI Sbjct: 567 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGI 626 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A ++P + F + G GLGL IA++++ HGG+ SKL +G L Sbjct: 627 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNKGSTFYFTL 686 Query: 473 PNT 475 P Sbjct: 687 PVA 689 >gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 818 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 12/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + +S E +K AEE + AK FLA+MSHE+RTP+NAILG S ++ T N Sbjct: 296 ITGQKRLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTKTT----QN 351 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y I +S ++L+ +IN+ILDL++IEAG+ ++ +L D++++ +L+ + + Sbjct: 352 SQQRTYTEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEGVLRYKTE 411 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 EK +E + V D + QV+LNL+ NA+KFT GG + V + Sbjct: 412 EKGLEFDATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEKGG-IEVWCKLVDQQKDVN 470 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G G+ + + T+F Q +I G GLGL I++ ++ GG+ + Sbjct: 471 EIQFTVKDTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMGGKIHVE 530 Query: 460 SKLREGVE--VIAILPNTRVLNFI 481 S G +LP ++ + Sbjct: 531 STKGLGTVISFTLLLPTGKIESVS 554 >gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 896 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 675 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 19/274 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + + ++R AE N KS FLA+MSHE+RTPLN ++G +++ Sbjct: 267 EDITEQKNYEEALQKSRDEAESANRVKSEFLANMSHEIRTPLNGLVGMMDLLSRT----D 322 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E +E I S L +I+ ILD SRIEAG+ +++ + L ++ E I + + Sbjct: 323 PDEEQQECIRMAKFSANTLFKVIDGILDFSRIEAGKIAIAKISFDLKALLEEVIKIHTVL 382 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++K + + I P L + D +RQ++ NL+ NA+KFT G++ V+V +GQ Sbjct: 383 AEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLIGNALKFTDR-GQIKVSVREIRHQGQ 441 Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D+G GI+ G++ + F Q ++ G GLGL I + + GG Sbjct: 442 QVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTRRYSGTGLGLAICKQLAELMGGAIR 501 Query: 458 IRSKLREGVEVIAIL---------PNTRVLNFIP 482 S++ +G L P R P Sbjct: 502 AESEMGKGSVFRFTLVFTAAPGPGPAEREQALSP 535 >gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 384 ERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 440 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I + SG HLL+L+N+ILD S+IE + EL+ ++ D++ Sbjct: 441 -KDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYLS 499 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWT 396 ++K ++ + + +++ D+ +RQ+I NL+SNAVKFT G + + T+ Sbjct: 500 ICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK-GSITLNFSHTLTPK 558 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I ++D G GI + + + F Q + G GLGL I + + G Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLTIVKQLTDTMKGYI 618 Query: 457 LIRSKLREGVEVIAILPNTRV-------LNFIPEDNHESTQ 490 + S +G +LP + +P D ++ T+ Sbjct: 619 SVNSSEGKGTCFTLVLPLEITKSKQLIDSDALPSDKNKPTE 659 >gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519] gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii] Length = 965 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 12/287 (4%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 ++ L +++ L S I+ + E I E + + +K A+E N K Sbjct: 269 GPIIRLILIIGSFVAAILGVSFYWIIRLRKE----IRVREQIQKDLKKAKKEADEANEFK 324 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S F+A MSHE+RTPLNAI G + +++ + T Y+ I ++ ++L++IN+IL Sbjct: 325 SGFMARMSHEIRTPLNAITGMAYLLKKTDISL----TQSMYVDRITQASNNMLSIINDIL 380 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 D S+IEAG+ E+ E++ S+ DI++ + ++ + +E+ I D L D K + Sbjct: 381 DFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEIGFRLSKDSQLPNWFIGDPKRI 440 Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFG 425 QV+LN+L+NA KFT G + + + +IS IKD G G+ + ++ + + F Sbjct: 441 EQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFNIKDTGIGMTQQQVEKLFSPFV 500 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 QG +I G GLGL I ++++ GG + S EG I L Sbjct: 501 QGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDEGSTFIINL 547 >gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 776 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 12/285 (4%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ F ++ + S I + E + + E+ + + ++ AE+ N KS Sbjct: 87 IIRIISIFGAFVGVAMAVSIYWIFRLKKE----VRKRELIQIDLERAKREAEDANEFKSS 142 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A MSHE+RTPLNAI G + +++ + T Y+ I ++ ++L++IN+ILD Sbjct: 143 FMARMSHEIRTPLNAITGMAYLLKKTEISL----TQSMYVDRITQASNNMLSIINDILDF 198 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEAG+ EL ++ S+ I+++ + ++ + +E+ I DP + + D+K + Q Sbjct: 199 SKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKDPLIPNWFFGDQKRIEQ 258 Query: 371 VILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++LN+L+NA KFT+ G V + S++D G G+ E +I + F QG Sbjct: 259 ILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIGMTEEQIKNLFMPFIQG 318 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I G GLGL I ++++ GG+ + S EG I L Sbjct: 319 DSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIHL 363 >gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 799 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E +G I S +HLL LINE+LD++RIE G+ L++ Sbjct: 576 AIVGLTAIAGANV---ESQDRVIECLGKITESSRHLLGLINEVLDMARIERGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 633 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG ++ +I+DNG G++ + F + + QG G Sbjct: 693 DGGNTIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFEPFSRADDHRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 753 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785 >gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae] Length = 907 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 124 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 183 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 184 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 243 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 244 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 300 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 301 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 356 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 357 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 416 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 417 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 476 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 477 QMGGEIGVDSTPGEGSEFWISLKLPKAR 504 >gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 769 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 18/348 (5%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + L + + + + L ++ +++ +LA + H Sbjct: 5 AAGLRAWSILAVLAALAAALGAGLQWSSLQGPWRAVSAVSAVLAVVCGLCAALAAHRAAQ 64 Query: 211 NVKILSCQAEKDDLIAELEVAK--------SLSDETRKRAEEENLAKSRFLASMSHELRT 262 L+ + E+ DL E + ++ AE LAK FLA+MSHE+RT Sbjct: 65 AQHALAQRLEEADLARERLQQELRRHGELEQELLRAKQAAEAATLAKGEFLATMSHEIRT 124 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN I+ E+I + ++ + S LL ++++ILD S++EA + EL Sbjct: 125 PLNGIIPMLELISSGQLSV----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELE 180 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381 + +L +++ I +LQ A+ + + + I+PS+ V D +RQV+ NL+ NA+K Sbjct: 181 ITTFNLRELLDGVIQLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIK 240 Query: 382 FTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V + + ++D G GIA + + SF Q + G Sbjct: 241 FTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGG 299 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 300 TGLGLAICKRIIDLMGGRIGVESEPGRGSTFWFEIPLLKVIGDLQQAT 347 >gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1102 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 7/280 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + L + N + + +D+L +E ++ AE N+AKS FLA+MSH Sbjct: 464 IFVGMVVDLSEINRAEEALRKHRDNLARLVEERTYELKIAKEAAETANIAKSAFLANMSH 523 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N++LGF ++ + + ++ + S + LL +IN+ILD+S++E+G Sbjct: 524 EIRTPMNSVLGFIQITLESRL---LCAELRRHLETAYSSAKGLLIIINDILDVSKLESGE 580 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 + L + + + IV+E + ++ +A+EK I + D L + D + QVI+NL+ Sbjct: 581 FALEATCLDMPRIVQEALKTVESQAEEKGIGLDFHFDADLPHCYLGDPTRLGQVIINLVG 640 Query: 378 NAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT G + V + S+ D G G+ + + F Q I+ Sbjct: 641 NAIKFTKTGKITIGVRASDQGDASLHFSVADRGIGMTAEQAANIFNPFTQADISTARCYG 700 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPN 474 G GLGL I++ ++ GG+ + S+L GV LP Sbjct: 701 GTGLGLTISKQLVELMGGRIWVESELGRGVTFHFTAQLPV 740 >gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] Length = 1315 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 12/277 (4%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + + +A+ +++ AK + AEE N AKS FL++MSH++RTP+NAI+G Sbjct: 881 HRTLCLVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGM 940 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + + +G ++E Y+ I S +HLL+LIN+ILD+S+IE + L+ S +S+ Sbjct: 941 T-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPK 997 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + +M+ +A+E + + + + + + D + Q+++NLLSNAVKFT GG V Sbjct: 998 LLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMV 1057 Query: 390 HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + G + +++D G G+ E + + F + A +G GLGL Sbjct: 1058 ELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAH--IEGTGLGLS 1115 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 I + ++ GG+ + S + EG L R Sbjct: 1116 ITKGLIDLMGGKISVESWINEGSVFRVELEFDRAQAE 1152 >gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 602 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 12/341 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 +++ A F + +L ++ + ++ A ++Y + N +I Sbjct: 145 YLIMIASIEVAFVAIASLLFSRLLVKELRKVTKAIEDIEVSGPGLTLSY---EKNDEIGQ 201 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + + + E+ ++ A+ N AK FL+ +SHE+RTPLN ILG ++++ Sbjct: 202 VISAFNRMSVEMRKQYVQLSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQILGE 261 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 +E KE I I SG+HLL +IN+ILD++++E G+ EL SL +V+E Sbjct: 262 GV-----DEAKKEQISIIVSSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVK 316 Query: 337 IMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++K+++ + + + D ++QVI NLL NAVKFT G V W Sbjct: 317 NAFDNTCKQKSLDYVVTTEHIEGTYLAGDNTRLKQVIFNLLGNAVKFTKK-GAVTCHFQW 375 Query: 396 -TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 S I+I D G GI ++ T+ F Q + G GLGL I ++ G Sbjct: 376 LESESRLTITITDTGIGIPTDKLETIFKPFSQADSSTTRHFGGTGLGLAIVTQLLELMSG 435 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE-STQYKCY 494 + + S++ G + LP V+ ++ STQ C+ Sbjct: 436 KIELVSEVNVGSQCTVTLPMPSVITKPNRFSNALSTQTHCF 476 >gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] Length = 2415 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1883 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK ++ + +D V D Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDLLVMGD 1999 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT + G V V + I + D G GI+E ++ + Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPV-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLDRL 2058 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 935 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 140/249 (56%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + R A+ + +KS+FLA+MSHE+RTP+ AILG++E++ + Sbjct: 531 ITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEHDL----P 586 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +++ I R+G +LL++I+EILDLS+IEA + E++ L+ +V + ++ +RA Sbjct: 587 AEACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMDVRAS 646 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK+++I D L + +D K ++Q+++NL+ NA+KFT G V + V + Sbjct: 647 EKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQ-GHVDLAVRYV-DGHLQF 704 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D+G G+++ + + F QG ++ G GLGL I++ + GG+ ++S+LR Sbjct: 705 DITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQSQLR 764 Query: 464 EGVEVIAIL 472 +G A + Sbjct: 765 QGSTFTATI 773 >gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99] gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia tasmaniensis Et1/99] Length = 909 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 27/337 (8%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 I+ L + L V +V A I + ML + + Sbjct: 190 IAMLFAYRLMRDVTGPIRNMVSA--VDRIRRGQLDSRVEGYML----GELDVLKNGINSM 243 Query: 211 NVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + E I ++E+ D ++RA+E KS FLA+MSHE Sbjct: 244 AMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHE 303 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN ++GF+ +T+ N T ++Y+ I RS +LL +IN++LD S++EAG+ Sbjct: 304 LRTPLNGVIGFT----RQTLKTALNSTQRDYLHTIERSANNLLGIINDVLDFSKLEAGKL 359 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 L L + E +++L A EK +E+ I + + D M+Q+I+NLL N Sbjct: 360 VLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNIIGDPMRMQQIIVNLLGN 419 Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 A+KFT G + + V + + I D G GI++ + + +F Q +I Sbjct: 420 AIKFT-ESGNIDIRVEKRASSNNRMELEVQIHDTGIGISDKQQSQLFQAFRQADASISRR 478 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I Q ++ GG+ S+L G Sbjct: 479 HGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFH 515 >gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1596 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 9/271 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + ++E + + R AE+ + AK+ FLASMSHE+RTPLN Sbjct: 1062 RLLRDAEGRAEGYVASVRDVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLN 1121 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ILG+++++ P + I +G LL ++N+ILD S+IEAG+ EL Sbjct: 1122 GILGYTDLLLD---DPSLGGGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQP 1178 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L ++ + +++ A++K I + ++D + + D+ +RQ++LNLL+NAVKFT Sbjct: 1179 FLLDALLDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTH 1238 Query: 385 IGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + V S G ++ D G GI + + F Q +I+ G GL Sbjct: 1239 A-GSVTLAVACESPPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGL 1297 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL I+++++ GG + S + EG Sbjct: 1298 GLAISKNLVELMGGTIGVESVVSEGTTFWFT 1328 >gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1258 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 136/271 (50%), Gaps = 12/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + L +A + AKS FLA+MSHE+RTPLN +LG +E++ G N Sbjct: 578 ITSRKETEVLLRNASDQAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLS----GTKLN 633 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + SG+ LL LIN++LD S+IEAG + +L + + I +L +RA Sbjct: 634 PEQTTQLNVLKESGEGLLGLINDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRAD 693 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK I++ + D + D ++Q++ NL+SNA+KFT+I G V V+V + Sbjct: 694 EKGIDLLVEYDEVCPRFLVGDVFRIKQILTNLISNAIKFTSI-GHVLVSVKGIVDKHGMV 752 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G GIA+ P + T+F Q + G GLGL I + ++ G + Sbjct: 753 SITISVADTGVGIADKVQPHLFTAFVQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLS 812 Query: 460 SKLREGVEVIAI--LPNTRVLNFIPEDNHES 488 SKL G LP + +++I E+ Sbjct: 813 SKLNVGSTFTVTFALPESHAMSYIETIVDEN 843 >gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1237 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 19/337 (5%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-- 224 P + A+ + M F + L V + ++ + L Sbjct: 512 LLPAALRGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQ 571 Query: 225 -----IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 I+E A+ E ++ N KS FLA+MSHELRTPLN+IL S+ + Sbjct: 572 AVIIDISERRAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLA 631 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L E ++ +HR+G LL LIN++LDL+++E+GR +L I++ D++ E L Sbjct: 632 GNLT-EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASL 690 Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---- 394 + A+ K + + +ID + V +D + Q++ NLLSNA+KFT G V +TV Sbjct: 691 RPMAELKGLSLHTQIDAGVPRVIHSDRVRLHQILRNLLSNALKFTDQ-GEVTLTVSSEGR 749 Query: 395 -WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 S++D G GI + V +F Q + G GLGL I + ++ Sbjct: 750 QEDERELLCFSVRDTGIGIDPAQHEQVFQAFQQIDGSTSRRFGGTGLGLAITRQLVLALD 809 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G ++S +G LP + P +T+ Sbjct: 810 GDIGLQSTPGQGSTFTVRLP----VQSAPATAEPATE 842 >gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41] Length = 916 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/373 (27%), Positives = 162/373 (43%), Gaps = 22/373 (5%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALS---------ISALSNFMLPYAVFLSFFP 169 L W L L G Y +++ S L+ A + N L Sbjct: 149 LGWVELELSHSGMLLRGYRSLFASLLLITAGLGLTALLALRMGRTINRPLSQIKQAVAQL 208 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 L T+ LA + L S + + + I E Sbjct: 209 KDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEELQHSIDQATEDVRQNLETI---E 265 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P + Sbjct: 266 IQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLD 321 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I +S LL +INEILD S+IEAG+ L +L D++++ + +L A K +E Sbjct: 322 YLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLE 381 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISI 405 + + S+ D ++Q++ NL+SNA+KFT G V + ISI Sbjct: 382 LVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISI 441 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ + S EG Sbjct: 442 QDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEG 501 Query: 466 VEVIA--ILPNTR 476 E LP TR Sbjct: 502 SEFWISLRLPKTR 514 >gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 570 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 551 ESREGEGSCFWFTHP 565 >gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 1029 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 18/270 (6%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I E + ++ + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 645 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 700 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + +EYI I + LL LI++ILDLS+IEAG + S S + L DI+ E +++ R Sbjct: 701 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 760 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402 + +++ + ++ + QV+ NLL+NA KFT+ G +T G+ GR Y Sbjct: 761 ETSGVQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELY 817 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ Sbjct: 818 FYVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEE 873 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492 +G +P + P D + K Sbjct: 874 GKGSTFWFTIP------YQPADADNKKEDK 897 >gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 885 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 134/240 (55%), Gaps = 2/240 (0%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + K+ F+A+ SHELRTPL +I G+ +++ L T+GPL E ++++ + + + L Sbjct: 641 ELADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLT-EQQRQFLSVVKNNIERLN 699 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++N++LD+SRIE+G+ L I+L ++++ ++ + + K I + + L + Sbjct: 700 AILNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMI 759 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD + MRQ++ NL+SNA K+T GGR+ V V G +++KD+G GIA + + T Sbjct: 760 ADPERMRQIVTNLISNAYKYTRDGGRIDVVVS-NGGDSVTLAVKDSGVGIAADDQKHIFT 818 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F + +K G GLGL I +S++ HGG+ S+ G LP ++ P Sbjct: 819 RFFRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLPVGGDSDWTP 878 >gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 769 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 110/269 (40%), Positives = 158/269 (58%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + +EL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG L Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I L ++ AD + M+QV+LNLLSNAVKFT Sbjct: 620 RIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTD 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ + +++I D G GI + + F Q ++ G GLGL I Sbjct: 679 NGGRIALRTRRV-DGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ + HGG+ IRS+ G + +P Sbjct: 738 SRSLTSLHGGRMKIRSREAVGTVISLRIP 766 >gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 1068 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 520 KLEKVLMASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 575 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E +G I S +HLL LINE+LD++RIE+G+ L++ Sbjct: 576 AIVGLTAIAGANV---ESKDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQED 632 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + + E I+ +V D ++QV +NL+SNA+K+T Sbjct: 633 FNLSELVDNLITLTKPMLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTP 692 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 693 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSTEFQKIMFDPFSRADDHRTTRVQGTG 752 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G + + Sbjct: 753 LGMAISRNIVNLMNGNIKVDSTLHKGTRITVTI 785 >gi|260778315|ref|ZP_05887208.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260606328|gb|EEX32613.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 591 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 146/267 (54%), Gaps = 8/267 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE + +E ++ AE+ ++AK+RFLA+MSHE+RTPLNAI+G S+ + Sbjct: 99 RLSKDLEERTKVMEEAKRNAEQSSIAKARFLANMSHEMRTPLNAIIGLSQ----KEYYQS 154 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++E + ++ I+ SG+HLL LIN +LDLS+IE G+ +L + +++ + Sbjct: 155 SDEQTRHFLSMINSSGEHLLKLINNVLDLSKIEQGKSKLDSDEFFISELIDVSKTVFINF 214 Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 +++ +++F + + +D+ + Q+I NL NA+KFT G +H+++ + Sbjct: 215 DKQQAVDVFFSVSLDRNYKIKSDKTKLVQIINNLGYNALKFTESGHVEIHISLS-SESGM 273 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I +KD G G+ + ++ V F Q +I G GLGL I QS++ GG + S Sbjct: 274 LHIVVKDTGIGMTQEQLDKVFQEFTQADDSITRKYGGTGLGLSICQSLVNLLGGAISVES 333 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487 L EG E +P + + + P + + Sbjct: 334 SLGEGSEFSIEVPVS-ITDSAPLASDK 359 >gi|90022761|ref|YP_528588.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952361|gb|ABD82376.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 861 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 161/472 (34%), Gaps = 48/472 (10%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ-----NPIFPMWSL 77 + + + ++ I ++ +L +G + + W Sbjct: 1 MTNSSTTHLAKNQRIRLINSTWAAGGGVLLSFVAYYSTTMGLFLGDKNVLIWVLVGFWLG 60 Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 + L K+ + + + W + T +T + Sbjct: 61 NFAFIGTIASGLNKRFRDPALT----------------LPQMYWAVSTTNIALMFTTQLD 104 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +Y +L + + ++ I + A Sbjct: 105 VLYYLLIMLTMVFGIFRLSVRQFNVFCYFAIAQLLLSLFVRYSLYASDAIGTLIINWVAF 164 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F + + + L L+ E AKS FLA+MS Sbjct: 165 GFCA----------ITLTALCNSIVRLRHRLKQKNEELSEAL-------KAKSEFLANMS 207 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N ++G +V + + Y+ S Q LL +IN+ILD S++EAG Sbjct: 208 HEIRTPMNGVIGMLDV----ALLSETSPEKHRYLSVARNSAQSLLGIINDILDFSKVEAG 263 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + EL + D+V E ++ A++ ++E+ I P++S V D ++Q++ NL+ Sbjct: 264 KLELEAIDTDIDDLVHEVLVNFSGLAEQNDVELIADISPTISHLVKCDPGRIKQILNNLV 323 Query: 377 SNAVKFTAIGGRVHVTVGWTS--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT G V V + ++D G GIA + SF Q + Sbjct: 324 GNALKFTPH-GEVLVKARAEKLVSGRIQLHFLVRDTGIGIAAQNQKHLFDSFTQADTSTT 382 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 G GLGL IA+ + G + S +G + P+ Sbjct: 383 RKYGGTGLGLSIAKRLCETMNGAISLESYEGKGSTFAFFIEVEASEERPPKA 434 >gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437] Length = 600 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 8/300 (2%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + L+ +L F I H + + A D++ + V + +++E R Sbjct: 305 LWPSPLEQFFHQVLEGEREVFGDIDVHGRTWALVMAPLYAGPDEIRGAVAVLRDVTEERR 364 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + + F+A++SHELRTPL+ + G+SE + + + E +E IH Sbjct: 365 -----MDKLRKDFVANVSHELRTPLSMLQGYSEALLDDI--AASPEDQREITRVIHDESL 417 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + L+ E+LDL+R+EAG L S + + +++R Q A+E+ + + + + Sbjct: 418 RMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMD 477 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V DE + QV+ NL NA++ T GGRV + + Q I ++D G GI + ++P Sbjct: 478 PVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKGVQLI-VEDTGSGIPQEDLPF 536 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 V F + A + G GLGL I + I H G ++SK EG LP + Sbjct: 537 VFERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLPVKTPME 596 >gi|262384753|ref|ZP_06077886.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293734|gb|EEY81669.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 943 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V TS + D G GIAE Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTSEDQENVYLRFEVIDTGCGIAE 724 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784 Query: 475 TRVLNF 480 ++ Sbjct: 785 GKIKES 790 >gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1098 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 152/273 (55%), Gaps = 14/273 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +L+ ++ + ++ A+ NLAKS+FL++MSHELRTPLN ILGF++++ Sbjct: 600 RDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILGFTQLLLRNR---S 656 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N +EY+ I+RSG+ LL LIN++L++S+IEAGR LSE+ L ++ M L+ Sbjct: 657 LNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYGLLDRLQQMFALK 716 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 AQ + +++ + P++ + ADE +RQV++NLL NA+KFT G+V + V + Sbjct: 717 AQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFT-RIGQVTLRVETPNQNIT 775 Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 S++D G GIA+ + + F Q K A++G GLGLPI+Q + GG Sbjct: 776 PDEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQK-AQEGTGLGLPISQRFVQLMGG 834 Query: 455 QFLIRSKLREGVEVIAIL-PNTRVLNFIPEDNH 486 + S L +G + +++ +P Sbjct: 835 DIRVNSTLGKGSIFTFDIRTRAVIMDTLPTPAP 867 >gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 917 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] Length = 947 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 143/273 (52%), Gaps = 9/273 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI + + ++AE + AKS FL+ MSHE+RTP+NAI+G +++ M P Sbjct: 546 LIFRSRLHSAKMKLELEKAEAGSRAKSDFLSRMSHEIRTPMNAIVGLADL---TEMIPSL 602 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E + + I S ++LL+LIN+ILD+SRIE+G+ EL ++ SL ++ + ML A Sbjct: 603 PEKAQINLTKIKTSSRYLLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEA 662 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 + + + + + D +RQVILNLLSNA KFT GG V + V + Sbjct: 663 ERRELTFRVEKNLQHDVFIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTG 722 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI+E + SF Q + QG GLGL I+++I+ GG+ L++ Sbjct: 723 NVLVQVIDTGIGISEENQKRIFRSFEQV-GPNATKCQGTGLGLAISRNIIKLMGGEILVK 781 Query: 460 SKLREGVEVIAILP-NTRVLNFIPEDNHESTQY 491 S+L +G E + L+ +PE + + Sbjct: 782 SELGKGSEFSFSISMLKGELHELPETKTNAKEI 814 >gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 751 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 16/289 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L + ++ AE L +L+ A+ +++ R AE + AKSRFLA MSHELRTP Sbjct: 191 QEELRAAEEQLTRLAAETFALAEKLDGAREEAEDARVAAENASRAKSRFLAMMSHELRTP 250 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 + A++G +++ +G NE + + S L+ ++N++LD S+IEAG+ L E Sbjct: 251 MTAVIGMGDLL----LGTGLNEQQIALVKTLRSSADTLMTILNDVLDFSKIEAGQLTLEE 306 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 SL +V + + + +RA K + + I + + D +RQV+ NL+SNA+KF Sbjct: 307 IDFSLPRLVEDVVQLFLVRAAAKGLSLSASIAENTPRHIRGDPTRLRQVLYNLVSNAIKF 366 Query: 383 TAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 T G + + V ++D+G G+ + + +F Q + Sbjct: 367 TDR-GAIEIAVWSPDPPASPLSASPMTLRFEVQDDGIGMTADQRARLFDAFVQADASTSR 425 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I + ++ GG+ + S G + TR P Sbjct: 426 KYGGTGLGLSICKRLVEAMGGEISVASTPGRGSTFRFSI-RTRRAEARP 473 >gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 917 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INGPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2142 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 171/405 (42%), Gaps = 26/405 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R +++ + G ++ L ++ +L + T I + ++ ++ M A+ Sbjct: 1296 RNIVVLPVLFEGDIKAVIELASFHKFSDVHLGFLEQLTESIGIVLNTIAANMRTEALLKQ 1355 Query: 167 FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L + + + A L + L ++N ++ + Sbjct: 1356 SQALTDELRKQQEELTETNKRLEQQANSLQQSEELLKRQQEELRRTNEELQEKAKLLSEQ 1415 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ ++ EE + KS FLA+MSHELRTPLN++L S+ + Sbjct: 1416 KNEVEHKNLEVEQAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSEN 1475 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 T G L E+ IH SG LL LIN+ILDLS+IE+G + + D+ Sbjct: 1476 TDGNLTG-RQVEFARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVER 1534 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + A +K+++ ++ +L V D K ++QV+ NLLSNA KFT G+V +++ Sbjct: 1535 TFRQVADKKSLQFDISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFT-ESGQVTLSIQRA 1593 Query: 397 SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 ++D G GI + + + +F Q + G GLGL Sbjct: 1594 RAGWSSDHPILRTAPTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1653 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I++ I GG+ + S++ G LP V P + ++ Sbjct: 1654 ISREIARLLGGEIRLESEVGRGSTFTLFLPLKYVAP-RPTETGQT 1697 >gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 896 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|153834760|ref|ZP_01987427.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148868795|gb|EDL67863.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 576 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 8/280 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV S + R+ AE N +KS FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKSEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ T+ +E+ E + + S LL +I++ILDLS+IE+G + LSE Sbjct: 231 NSVLGMLDILRQSTL----SESQSEVLNQMECSADLLLAIISDILDLSKIESGSFRLSEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 +L D V I + A KN+ + + + W D + QV+ NL+ NA KFT Sbjct: 287 WTNLRDAVTLVISQQKQVATSKNLSFEYQCNLDNNKQYWIDSTRLSQVLFNLIGNASKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG ++V+V IS+ D G GI + +I + T+F QG +I G GLGL Sbjct: 347 DFGG-INVSV-IERDGELVISVVDTGIGIPQSKIGHLFTAFHQGDSSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP 482 I + ++ G ++S+ G +P TR P Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRP 444 >gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt domain-containing protein [Geobacter bemidjiensis Bem] gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 818 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 7/285 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + H + +++ AE + +LE + + A+ N AKS FLA MSHE+R Sbjct: 139 RLALHSEELKLEVAERTAELSSVNRQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIR 198 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+ +LG +E++ + ++ ++ + SG+ LL +IN ILD S+IEAGR EL Sbjct: 199 TPMYGVLGMTELLLNTYL----SKEQARFVESVRCSGEALLGIINNILDFSKIEAGRMEL 254 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380 L + + + M A K I + +I+P L ++ D +RQV++NLL NAV Sbjct: 255 EMIPFDLHQLTADAVAMFADDAARKGIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAV 314 Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 KFT G V ++V ++++D G GI+ + F QG ++ G G Sbjct: 315 KFTPE-GAVTLSVSLVRRPALVRVTVEDTGIGISREAQERIFDHFAQGDESMTRRYGGTG 373 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 LGL IA+ + GG + S+ +G + P + Sbjct: 374 LGLAIAKQLTELMGGGMELSSEPGKGSSFSFTVALEPHQKAPPPE 418 >gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42] gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42] Length = 593 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L ++L + + + A+EK + + + I S Sbjct: 418 LVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDISVSQPECVF 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T GG VH+ I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ HGG + S + +G +P Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFTFYIPTK 588 >gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 890 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 123/236 (52%), Gaps = 3/236 (1%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E+ + KS FLA+MSHELRTPLN+IL S+++ LN + + Y IH SG Sbjct: 482 EQLEKSSQYKSNFLANMSHELRTPLNSILILSQLLAENENHTLNEDE-EGYAKVIHTSGT 540 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LI++ILDLS+IEAG+ L+ ++L +I + A+++ + + SL Sbjct: 541 DLLKLIDDILDLSKIEAGKVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLP 600 Query: 360 SVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +VW D + ++Q++ NLLSNA KFT G V + +T IS+ D G GI + + Sbjct: 601 AVWYTDGQRLQQILKNLLSNAFKFTEQ-GSVRLGFDYTDDGMLAISVTDTGIGIPKDKQK 659 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I + GG + S L EG LP Sbjct: 660 LIFEAFQQVDGKTNRIYGGTGLGLSICNEFVKLLGGSIQLDSTLGEGSCFTVYLPL 715 >gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1303 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 10/265 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + + + A++ N AKS FLA+MSHE+RTP+NAILG S + + N+ Sbjct: 541 ISVRKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRTS----ND 596 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ IH + Q LL++IN+ILD +++EAG+ E+ +L +++ + ++A Sbjct: 597 PRQRAYLQKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVLDTLATLTSVKAD 656 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK + + + L V D + Q++LNL NAVKFT G V V V +G Sbjct: 657 EKGLALIFRRHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQ-GSVVVNVEKVQQQGDQI 715 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G G+ E +I + +F Q +I G GLGL I + ++ G+ ++ Sbjct: 716 VLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMAGELSVQ 775 Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484 S G +P T V + + Sbjct: 776 STPEVGSCFTFTVPFTVVQEQVVDA 800 >gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 821 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 9/260 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE + + AE+ N AKS FL+ MSH++RTP+NAI+G + + Sbjct: 275 TEQRELQKQLEERSEMLHNALQAAEQANKAKSDFLSQMSHDIRTPMNAIIGMTAIAGSHL 334 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + ++ + I S + LL LINE+LD+SRIE+GR ++E SL ++++ + + Sbjct: 335 ---DDKDRVRDCLQKITVSSRLLLGLINEVLDMSRIESGRISITEEEFSLNEMLQNIVTI 391 Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q K + + +V D + ++QV LN+LSNAVK+T GG++ +++ Sbjct: 392 IQPSIMAKRHAFDIQARELQHENVTGDPQHIQQVFLNILSNAVKYTPDGGKILLSIREKP 451 Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + +DNG G+ + + F + A A QG GLG+ I+++I+ Sbjct: 452 SQTAGYGCYEFVFRDNGYGMKSEFLRKIFKPFERAEDAAVRAVQGTGLGMAISKNIVQMM 511 Query: 453 GGQFLIRSKLREGVEVIAIL 472 G + S G L Sbjct: 512 DGDIQVESTYGNGSTFTVTL 531 >gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB] gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB] Length = 1023 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 11/275 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 +T + + + + L +E + + ++ AE N AKS FLA+MSHELRT Sbjct: 597 VTRDVTERKRAEAELEQYRHHLEKMVEDRTAALSDAKEAAEAANRAKSTFLANMSHELRT 656 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G ++++ + ++ +E + + ++ +HL+ +IN+ILDLS+IEA R L Sbjct: 657 PMNAIMGMTDLVLRRS----TDDRQREQLSKVVQASRHLMAVINDILDLSKIEAERLTLE 712 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAV 380 + L +I ++ R EK + + P LS++ D + Q++LNL NAV Sbjct: 713 KIPFRLTEIFDNLKNLVGERVAEKGLLLKISKAPELSNMVFRGDPLRLGQILLNLTGNAV 772 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFTA G + ++V + D G GIA + + T+F Q + Sbjct: 773 KFTAE-GSIALSVSVVEDHPHDVVLRFEVCDTGIGIAAVDQGRLFTAFEQADGSTTREYG 831 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + GG + S G Sbjct: 832 GSGLGLAISRRLAKLMGGNIGVESTPGVGSTFWFT 866 >gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25] gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25] Length = 987 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 161/370 (43%), Gaps = 22/370 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L+ A +E RK+AE+ Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKRLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GIA+ + T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQRTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q + G GLGL I++ I+ GG + S+ G +P P Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGILEVDSEEGHGSRFWFSIPLE---ESEPV 698 Query: 484 DNHESTQYKC 493 + +C Sbjct: 699 ETGAVATARC 708 >gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1156 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 128/268 (47%), Gaps = 3/268 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++NV++ + E AKS + E + KS FLA+MSHELRTPLN+ Sbjct: 432 LEQTNVQLEEQTQLMEAQRDEATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNS 491 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L E + Y I +G LL LIN+ILDLS+IEAG E+ + Sbjct: 492 SLILAKLLADNRDGNLTAEQVR-YAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPV 550 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L + + + Q A EK + ++ P + D + + QV+ NLLSNA+KFT Sbjct: 551 PLASLAEDLTRVFQPIADEKKLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFT-E 609 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V + G +++D G GIAE + V +F Q G GLGL IA Sbjct: 610 SGEVALEASAAPGDRIAFAVRDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIA 669 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + + GG + S+ G +P Sbjct: 670 RELARLLGGDIHLASEPGRGSTFTVTIP 697 >gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 922 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 11/300 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + + + + + +E+ D RK A E + KS Sbjct: 233 LASGINRMAGTLQNAREELQHSVDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSE 292 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ + P +Y+G I +S LL +INEILD Sbjct: 293 FLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADSLLGIINEILDF 348 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + S+ D ++Q Sbjct: 349 SKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQ 408 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NL+SNA+KFT G V + ISI+D G G++ ++ + +F Q Sbjct: 409 ILTNLVSNAIKFTREGTIVARAMLEEENDDSVQLRISIQDTGIGLSNQDVRALFQAFSQA 468 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTR-VLNFIPED 484 ++ G GLGL I++ ++ GG+ + S EG E LP TR +P Sbjct: 469 DNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDAEDLPAA 528 >gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 1223 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 10/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E+++ + RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 647 VTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDT--- 703 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I +SG LL +IN+ILD S+IEAG+ +L + V + + +L A Sbjct: 704 -RQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 762 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399 EKNIE+ +IDPS+ V D RQV+ NL+ NAVKFT G V + + S Sbjct: 763 EKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFT-EMGHVLIELSAQSAEASET 821 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D+G GI ++ T+ F Q + +G GLGL I ++ G + Sbjct: 822 ILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVV 881 Query: 460 SKLREGVEVIAILP 473 S++ +G +P Sbjct: 882 SEVGKGSTFEVNIP 895 >gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 899 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G+ Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715 Query: 464 EGVEVIAILPNTRVLN 479 G LP V+ Sbjct: 716 TGTTFTFWLPLENVIQ 731 >gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 694 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 145/333 (43%), Gaps = 18/333 (5%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 +L +++ P+ + ++ ++DISLA + + I Sbjct: 121 GTSLLIHSLIAQDEPLGIMMACIEGDPGGIMDISLAFVTVVLGAAAGVIKNS-------- 172 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 +DL EL S E+ + E N AK RFLA++SHE+RTPLNAILG + ++ Sbjct: 173 -RLYRMINDLNDELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIV 231 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + + I G LL LIN+ILDLS++ AG +L E+ L +++ Sbjct: 232 RGK-----SPAEMDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELLEA 286 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 + A+ K ++ + + + D +RQV+ NLL NAVKFT+ G + V Sbjct: 287 LEGSYRSEAKRKGLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVK 346 Query: 393 VGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + G S+ D G GI +P + F Q + G GLGL I++ I+ Sbjct: 347 SLRSDGDKLTLSFSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVR 406 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 GG + S+ G + +PE Sbjct: 407 AMGGDISVESERGRGSTFSLDVEVIPCDPPVPE 439 >gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 528 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 172/352 (48%), Gaps = 6/352 (1%) Query: 126 LVEPGTWTPEYLTIYKSATLLI---ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 ++ P T + + A +LI ++ A S + P + + AL + Sbjct: 139 VLLPSTTRVDRPVLTARAPILINGRRVAELATSASLWPTFFETALVTMFSALIAAGLYLG 198 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + A L AL + + A L+ A TR A Sbjct: 199 IDRVVLRA--LRHALDHLQTAVRERDSALQETSDALALLARQNTRLKAASEELSRTRDAA 256 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + +KS FLA+MSHELRTPLNAI+GFSE++ + GP+ + Y++Y DI SG HLL Sbjct: 257 LTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQLYGPIGHAKYRDYANDIRSSGDHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSV 361 LI+++LDLSR+EAG+ L + +++ + C ++Q RA + I++ + +++ Sbjct: 317 ALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCRLVQGRATDSGIDLRFAPAANPSATI 376 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D RQ++LN+L+NAVKFT GG V V +G + I + D G G+++ ++ V Sbjct: 377 LGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDDTAGTVVIRVADTGIGMSDDDLERVF 436 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ A +GVGLGL ++++++ H G I S G V P Sbjct: 437 RPFEQAGVSGARAVEGVGLGLALSRALVREHDGTLNIASAPGRGTTVTLSFP 488 >gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] Length = 528 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 19/384 (4%) Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + G + L+ +I + + ++ + P+ Sbjct: 130 WPILLDGDSLGSVELLVSLDVLRNERNALILIAGVIVIFSTLIAFALSTTLQRALIRPIT 189 Query: 172 VALSTQAIMSMHVLDISLAGM-----LATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 +S A L ++ F ++ + + +++ + + + L+ Sbjct: 190 HLAGVMHQVSSEKAYARRAVRETNDELGDLITGFNHMLEQIETQHRELMVYREQLERLVD 249 Query: 227 EL-----------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + E++ E N KS FLA+MSHELRTPLNAI+GFS+++ Sbjct: 250 DRTTQLQDANVRLHQTVADLQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMV 309 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + G L + Y++Y DIH S HL+ +I +ILD +RIE G+ EL E+ +S+ ++ + Sbjct: 310 NQLFGKLGDARYEDYAKDIHYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDA 369 Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + ++ + I++ Q+ P + D +RQ+++NLLSNAVKFT GG + + V Sbjct: 370 LRIISPSIHAQRIKLEQQALPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVK 429 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G I+I D G GI E ++ V+T F Q A QG GLGL +++++M H G Sbjct: 430 IRDG--IEITITDTGIGIDEADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQG 487 Query: 455 QFLIRSKLREGVEVIAILPNTRVL 478 + + S+L EG V P R++ Sbjct: 488 KLTLSSRLGEGTAVTIYFPAFRMM 511 >gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 899 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G+ Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715 Query: 464 EGVEVIAILPNTRVLN 479 G LP V+ Sbjct: 716 TGTTFTFWLPLENVIQ 731 >gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1087 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 12/299 (4%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 ++ + L T ++ +S++ ++ E + A+ + R Sbjct: 646 ITRLLAVPLLDSGKVTFIAVVANKPDDYDQSDITQVTLLLEGMLAHLKRRRAEEGHKQAR 705 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + AE N AK+ FLA+MSHELRTPLN +LG E+ + +++ SG+ Sbjct: 706 EEAEAANRAKTEFLANMSHELRTPLNGVLGMIEL----AGMSCADPKTHDFLRMAKDSGR 761 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL++IN++LDL++IEAG+ EL + +L + + + + A+ K + +D S+ Sbjct: 762 MLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQSVP 821 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------TSGRGQYISIKDNGPGI 412 + D RQV+ NL+ NAVKFT G V+++V T +KD G GI Sbjct: 822 EHLVGDLGRFRQVVTNLVGNAVKFTEK-GEVNLSVMRIPHPFATDSVQIRFRVKDTGIGI 880 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + F Q + S G GLGL I+++++ GG + S+ +G Sbjct: 881 PQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFT 939 >gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 835 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 137/255 (53%), Gaps = 8/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A+ + ++ A+ N AK+ FLA++SHELRTP+NAILGF+E+++L+ Sbjct: 322 REITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAELLKLKL--KA 379 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EYI I+ S LL+LIN++LD++++EAG+ EL+ S+ ++ E I + + Sbjct: 380 QEPPIYEYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEIINIFSNQ 439 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A ++ +++ I ++ + D +RQ+++NL+ N++KFT+ G + V++ + Sbjct: 440 ASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSK-GYIKVSLSMQNLYGN 498 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I ++D G GI + + + +F Q G GLGL I Q I GG Sbjct: 499 YGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEFLGGTIT 558 Query: 458 IRSKLREGVEVIAIL 472 + S+ EG + Sbjct: 559 LDSEWGEGSTFTLMF 573 >gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 565 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 243 EEENL--AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E++NL + F+A++SHELRTPL I ++E + + + ++E ++ I + Sbjct: 337 EQQNLDNMRKEFVANVSHELRTPLTTIKSYTETLLNDGV---DDEMRNRFLYIIDKEVDR 393 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + L+ ++L LSR+++ +L+ + +L + V E + +++ AQ+KN ++ + Sbjct: 394 MTRLVKDLLLLSRMDSNG-KLNLTEANLNEFVEEVLYKIKIEAQKKNQKLLFCAGEEKRN 452 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D+ M QVILN++SN++K+T GG V V + YI + DNG GI + ++P + Sbjct: 453 VNIDKDKMEQVILNIVSNSIKYTNPGGYVRVFTKYL-DDYAYIVVNDNGIGIPKKDLPRI 511 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + G GLGL IA+ I+ HGG+ I S++ G V L Sbjct: 512 FERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEIGVGTTVTVKL 563 >gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] Length = 1202 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 171/380 (45%), Gaps = 15/380 (3%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 +L+ A G +L L + + + ++ + I +++SA + + Sbjct: 384 IMLIPLFADGHIIGVLELGSTSNFDEDRASYFEDCCVNIGIALSAAKSREKEQQLLEETQ 443 Query: 169 PVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKIL---SCQAEKDD 223 L Q ++ A L + L ++N ++ EK+ Sbjct: 444 AQSEELQVQHSELENLNTELEAQTQKLQASEEELKVQQEELMQANAELEERSRLLEEKNH 503 Query: 224 LIAE--LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 LIAE E+ K + + KS FLA+MSHELRTPLN+IL S ++ Sbjct: 504 LIAERNNEIQKKVEELAL-----STKYKSEFLANMSHELRTPLNSILLLSRLMTENP-DE 557 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 NE E IH SG LL LI+EILDL++IE+G+ L + + ++V++ + Sbjct: 558 NLNEDQVESARVIHSSGSSLLTLIDEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNP 617 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 QEK + ID + V +D + QV+ NLLSNA+KFT G +H+ Sbjct: 618 VFQEKALPFNIVIDEDVQKVIESDRLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPD 677 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KD G GIAE + + +F Q + K G GLGL I++ I GG+ +++ Sbjct: 678 FIIFSVKDTGVGIAEDKQKIIFEAFQQADGSTKRKFGGTGLGLSISREIARLLGGELVLK 737 Query: 460 SKLREGVEVIAILPNTRVLN 479 S++ +G E I+P V Sbjct: 738 SEVDKGSEFSFIIPVHAVTE 757 >gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] Length = 631 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L A S S E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 388 IRILRKAYSRSSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PEVDDR 443 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY I + LL LIN+ILD+S+IEAG ++ + I + + E +QLR + Sbjct: 444 EEMREYTDIIETNTNLLLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLK 503 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + ++ D+ + Q++ N + NA+KFT G + + Y Sbjct: 504 NDAVTFTFCERLPECMLYIDKNRLMQLLSNFIVNAIKFT-KSGSIRMGYRMKDINTIYFY 562 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + QG GLGL I I+ + G+ + S+ + Sbjct: 563 VSDTGCGMSPEQCRHVFERFVK----YNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGK 618 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 619 GSTFWFTLPYRK 630 >gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 740 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 28/255 (10%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 NLAKS+FLA+MSHELRTPLNAI+G+SE+++ + E + + +I+++G+HLL LI Sbjct: 488 NLAKSQFLANMSHELRTPLNAIIGYSEMLQEDAEDLGEEEFVCD-VKNIYKAGKHLLGLI 546 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +EILDLS+IEAGR E+ + +R+ + ++ + + + + + +D+ Sbjct: 547 DEILDLSKIEAGRMEMELMTFDVRATIRDVVATVEPLLIKNANRLNVQYGEDIGFMHSDQ 606 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------------------SGR 399 +RQ++ NLLSNA KFT G + +TV Sbjct: 607 TKVRQILFNLLSNAAKFTHD-GTISLTVSRERVAIESEKLKDRESDVENDLSKTLIADYD 665 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G G++ ++ + F Q + G GLGL IA+ GG+ ++ Sbjct: 666 FLIFNCTDTGIGMSSEQLQRLFQPFMQADPSTTRKYGGTGLGLAIAKKFCEMMGGEITVK 725 Query: 460 SKLREGVEVIAILPN 474 S+L +G I+P Sbjct: 726 SELGKGSTFTVIIPA 740 >gi|149925736|ref|ZP_01914000.1| periplasmic sensor hybrid histidine kinase [Limnobacter sp. MED105] gi|149825853|gb|EDM85061.1| periplasmic sensor hybrid histidine kinase [Limnobacter sp. MED105] Length = 581 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 92/449 (20%), Positives = 172/449 (38%), Gaps = 22/449 (4%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQ----NPIFPMWSLITLAVYA 84 ++ + I+ + LF P + V+ + +W L + Sbjct: 3 AEDPYQLTILREQTKLLFEHLPFVLYGVMASSAGLVAVLWHTGQGTALLLWLLAVYMLTG 62 Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 + + N + W + A G+ W ++ T +T+ Sbjct: 63 LRWWVRRHF-NKLGAHFDPQHWIQVAIQFTAASGILWGFAGVMFFSTDPMVLMTLAIFLA 121 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 ++A ++S+ + YA F P + + + L + + + Sbjct: 122 AMVAGAVSSHACHTPAYAAFA--LPASLPFIARCLWENTPFLWVLGSVAFVYVLINIHYG 179 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 +L ++ + + + +LI+E ++ AE+ ++AK+RFLA+ SH+LR P+ Sbjct: 180 RNLQNMVIQSIRLRFQNAELISE-------LTLQKRVAEQASVAKTRFLAAASHDLRQPV 232 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 AI E++ L N K + I +G L NL+N +LD ++I A Sbjct: 233 QAI----ELLVDALSEDLANHPSKGLLDRIQEAGYGLRNLLNALLDSAKINAAAITAKPR 288 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L +++ L +AQ K ++I + + + D + V+ N + NA+K+T Sbjct: 289 HVQLAPLLKRICNELATQAQHKGLDIRV--AKTKACAYTDPALLELVVRNYVENAIKYTP 346 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GRV V I + D G GI TV F Q + +G+GLGL I Sbjct: 347 E-GRVLVGC-RKQNGQIRIEVHDTGIGIPASAQETVFQEFYQLGNPERDKAKGLGLGLYI 404 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 AQS+ + S + +G +P Sbjct: 405 AQSLGKLLNHDIGVNSTVGKGSMFYITVP 433 >gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens] gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str. Lens] Length = 910 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 19/370 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLA 194 + I L L + ++ L +++ + ++ + + +S G L Sbjct: 180 QMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSMKQILSNEFETEIRVSSPGELG 239 Query: 195 TALSFFTYITYH----LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 ++ + N I A+ + LE +K+ EE++ KS Sbjct: 240 IIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLELLEEKNIELSLEKKKTEEKSRQKS 299 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F+A+MSHE+RTP+N ++GF+ V+ + PL +Y+ I S Q LL++IN ILD Sbjct: 300 EFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKTIKSSAQDLLSIINAILD 355 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+I+AG+ L + + + E + + A +K I++ D ++ V D ++ Sbjct: 356 FSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKVIDLIPITDINVPKMVLGDPLRIK 415 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFG 425 Q+I NL++NAVKFT G V + +I D G GI+ + + T+F Sbjct: 416 QIISNLVTNAVKFT-DHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I + + G+ + S++ +G A + +++ + Sbjct: 475 QADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARIKVEKLVAY----E 530 Query: 486 HESTQYKCYA 495 E Q +A Sbjct: 531 IEKNQTHRFA 540 >gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] Length = 629 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ +++ + +++AEE + KS F+A+MSHE+RTPLNAI+GFS ++ + Sbjct: 380 ITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL----PYMEDA 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + YI I+ + + LLN+INE+LDLS+IEAG EL+ SL +++ E + Sbjct: 436 KEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVP 495 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + ++ S + D ++Q++ NLLSNA+K T G V V+ IS Sbjct: 496 E-GVTLKKRYPASPFLIEQDSMRIKQILSNLLSNALKNTTQ-GYVEVSYETEQSG-VKIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + ++ + F + I QG GLGL I +SI+ G + S L E Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKVDSYI----QGAGLGLSICKSIIEQMNGTIEVASVLGE 608 Query: 465 GVEVIAILP 473 G P Sbjct: 609 GSTFTVTFP 617 >gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 684 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 8/269 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + EL+ E +A++ + AKS FLA+MSHELRTP+N +LG +++I+ ++ Sbjct: 138 HRLFELKRNNLSYQEAADKAQKASEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSAD 197 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ I SGQHL+ ++N+ILD S++E G+ EL S S+ D+V L Sbjct: 198 T----RKQAQIIIDSGQHLVTILNDILDFSKVEQGKMELELSPFSVTDVVTHLDKTLTPL 253 Query: 343 AQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A +K I P+ + D RQ++ NL NAVKFT G V + T+ Sbjct: 254 ATDKGISFVIKDNIPTNIQLVGDSARTRQILFNLAGNAVKFTESGKVEVEFEIAPTTPPS 313 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I + D G GIAE ++ + T+F Q ++ G GLGL I + ++ GG + S Sbjct: 314 VNIMVSDTGIGIAEDKVDHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTIDVSS 373 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHEST 489 +L G LP ++ + + E Sbjct: 374 QLNMGTCFTISLPLE--MHELEQQTTEQA 400 >gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4] gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4] Length = 2150 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/271 (29%), Positives = 146/271 (53%), Gaps = 18/271 (6%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L D+ + ++ + + + ++ AEE N AKS F+A++SHE+RTPL+ ++G S++ Sbjct: 1354 SLRMAGTLRDMTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDL 1411 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + +E ++Y+ I +S Q LL +IN+ILD S++E+ + ++ S+I+ + Sbjct: 1412 LLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQ 1467 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-V 391 I ML + A +++I ++ P++ + D MRQV+LNLLSNA+KFT+ G + + Sbjct: 1468 AVIHMLSV-AANDDVDILLRVPPNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGHVLTDI 1526 Query: 392 TV------GWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +V T + I+I+D G GI + ++ F Q + G GLGL Sbjct: 1527 SVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLS 1586 Query: 444 IAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473 I + ++ GG + S + +G + I+P Sbjct: 1587 ITKRLIEEVMGGTIQVSSIVGQGSKFKCIIP 1617 >gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM 17244] gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM 17244] Length = 928 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 9/255 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E + ++ + A+ N AK+ FL+SMSH++RTP+NAI+G + + + M + Sbjct: 397 EQERQRIALEDAYQTAKVANEAKTNFLSSMSHDIRTPMNAIMGMAAIAK---MNTNEPDK 453 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ + I+ S +HLL+LINE+LD+S+IE+G+ L I L ++V + + EK Sbjct: 454 VRDCLNKINISSKHLLSLINEVLDMSKIESGKINLMLEKIDLSELVENVADICKPLVAEK 513 Query: 347 NIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RG 400 N ++ V AD ++QV+LNL+SNA+K+T GG + + S Sbjct: 514 NQQLKMSVGRVRHEKVIADGDRLQQVLLNLMSNAIKYTPEGGTITFRINELSSAIDNLGQ 573 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 DNG G+AE IP + F + + S QG GLG+ I +I+ G ++S Sbjct: 574 YEFIFIDNGIGMAEDFIPHIFEPFSRAEDSRISKIQGTGLGMAITDNIVRMMNGIIEVQS 633 Query: 461 KLREGVEVIAILPNT 475 L G + + +P Sbjct: 634 TLGVGSKFVVSVPME 648 >gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus H143] Length = 2390 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F +N ++ Q L E E +++ E + E+ Sbjct: 1817 VGISLANAFLYRNASKHSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1876 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + + Y+ I LL LIN Sbjct: 1877 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1932 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ +++ ++ + +D + V D Sbjct: 1933 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1992 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V I+ + D G GI+ ++ + Sbjct: 1993 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 2052 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L VL+ Sbjct: 2053 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2108 Query: 481 IPED-------NHESTQYK 492 P++ + +STQ K Sbjct: 2109 APKNAVVKTPWSQDSTQEK 2127 >gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 110/276 (39%), Positives = 152/276 (55%), Gaps = 2/276 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + + QA + EL + RAEE N KS+FLA+MSHELRTPLN Sbjct: 497 RLRATVIDLKRSQAALERQTNELADLAEKYQREKTRAEEANQTKSKFLANMSHELRTPLN 556 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ G L +E Y+EY DI SG +LL +IN+ILD+S+IEAGR +L Sbjct: 557 AIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVINDILDMSKIEAGRMKLDMEE 616 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + E + ++ RAQ+K++ + I+ S+ SV AD + +Q+I+NLLSNAVKFT Sbjct: 617 LDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRRATKQIIVNLLSNAVKFTPD 675 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGR+ V + I D G GIA + + F Q + G GLGL IA Sbjct: 676 GGRIVVR-SRQLDDRIVLMIADTGIGIAPHSLARLGRPFEQVESQLTKTYHGSGLGLAIA 734 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +S+ HGG +RSK+ G V LP V Sbjct: 735 RSLAQLHGGSMRLRSKIDVGTVVRVTLPRDAVKAAS 770 >gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae 642] Length = 917 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 13/388 (3%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 L ++ I TLL + + + T +A+ +S Sbjct: 134 RHLTSPIIPAEADTLLGWVELEISHNGTLLRGYRSLFASLLLILTGLAFTATLAVRMSRT 193 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 N + L T+ LA + + L S + Sbjct: 194 INRPMSQIKQAVSQLKDGNLETRLPPLGSRELDELASGINRMAATLQNAQEELQLSIDQA 253 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + I E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ ++ Sbjct: 254 TEDVRQNLETI---EIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + P +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ Sbjct: 311 QKSELTP----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQD 366 Query: 335 CIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--- 390 + +L A K +E+ + ++ D +RQ++ NL+SNA+KFT G V Sbjct: 367 TLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAM 426 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ Sbjct: 427 LEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIE 486 Query: 451 NHGGQFLIRSKLREGVEVIAI--LPNTR 476 GG+ + S EG E LP R Sbjct: 487 QMGGEIGVDSTPGEGSEFWISLKLPKAR 514 >gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 883 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 140/315 (44%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + + + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDMIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLNEIQVSNLEVA 735 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 736 ATVDEVIPAEVVEET 750 >gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26] gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26] Length = 883 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 735 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 736 ATVDEVIPAEVVEET 750 >gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 925 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 19/274 (6%) Query: 231 AKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + S +++ +E N AK+ F+A + HE+RTPLNA+ G + ++ + N +E Sbjct: 243 KELESQIAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQEE 298 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I SG++LL +IN ILD S+IEA + EL E L + E + + +A +K +E Sbjct: 299 FVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLE 358 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------ 396 + I+P+ ++ D +RQ++ NLL NAVKFT G V V V Sbjct: 359 LAYLIEPNTPSAIVGDSTRLRQILSNLLGNAVKFTEK-GEVVVYVSAQPLPNSDRTDKTL 417 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + ++KD G GIA + + F Q + G GLGL I+Q + GG+ Sbjct: 418 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 477 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S +G + + P + + Q Sbjct: 478 WVHSTEGKGSTFYFTIQAQATPSSSPATSQQGQQ 511 >gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] Length = 574 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E ++ + E +++ I+ L LIN+ Sbjct: 346 MRSQFVANVSHELKTPLTSIKGFAETLK----YVDDVENKNKFLNIINDEADRLTRLIND 401 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE+ + + + DIV++ M++ A +KNI+I + D + S+WAD Sbjct: 402 ILTLSHIESNSID-KVEEVKIDDIVKDVCCMMKTAAYKKNIKIEKIGDK-VPSIWADADR 459 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q+ +NL+ N++K+T GG V + + ++DNG GI++ + F + Sbjct: 460 FKQMAINLMDNSIKYTNNGGTVKIGT-MLQDNNCVLWVEDNGVGISKEHQSRLFERFYRV 518 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 A + G GLGL I + I+ G ++S++ +G + +P Sbjct: 519 DKARSRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIPL 565 >gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 927 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 134/258 (51%), Gaps = 8/258 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I L+ ++ + T+K+AE +LAKS FLA+MSHE+RTP+NAILG +E++ + Sbjct: 384 EDITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLSI- 442 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++ +G++LL +IN+ILD+S++E+G EL +L IV + +++ R Sbjct: 443 ---EQRGFLSVCRSAGENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEVIRFR 499 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 + EK + ID S+ + D +RQ+++N L NA+KFT G V Sbjct: 500 SHEKGLHQLIFIDESVPEWLLGDPARIRQILINFLGNAIKFTEAGTIATVVSTTAGKGSQ 559 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI E + V +F Q + + G GLGL I++ + GGQ + Sbjct: 560 VEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGGQLGL 619 Query: 459 RSKLREGVEVIAILPNTR 476 +S+ G L +R Sbjct: 620 KSQEGHGSTFTLSLRLSR 637 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 6/275 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ + + + ++ L + + ++RA+ N AKS FLA MSH Sbjct: 430 FLLGISRDITEQKQAEAELRRYREHLEDMIRERTAELAVAKERADAANQAKSEFLAHMSH 489 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG++++++ ++ + + I RSG+HLL LI++ILD+++IEAGR Sbjct: 490 ELRTPLNGILGYAQILKR---DTTLDQHQLDGLTVIQRSGEHLLTLIDDILDIAKIEAGR 546 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL+ S + L V ++++A EK ++ ++ P L V DE +RQ +LNLLS Sbjct: 547 MELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDLPACVRVDEIRLRQALLNLLS 606 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA++FT G V + V + ++D G GI +G + + + F Q S G Sbjct: 607 NAIRFTEK-GSVRLRVAFLPPARLCFEVRDTGIGIDQGRLEEIFSPFEQVSDDRHR-FGG 664 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I++ ++ GG+ + S+ G L Sbjct: 665 TGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699 >gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 837 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 4/260 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + A+ + E R AEE KS F+A+MSHELRTPL +I+GF+E+ + + Sbjct: 580 VTDFRAAEQATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFAEL---GHLRSRKS 636 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E DIH +GQ +L L+N++LD++++E+ + I L ++R L+ Sbjct: 637 PQFSEMFNDIHSAGQRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARELEPLQH 696 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I++ ++ AD +QV+ N+L+NA+KF+ GRV V + I Sbjct: 697 QKQIDLRLDLENFPMIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGNICID 756 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 D GPGI E+ + F Q S K G GLGL I + I+ G ++K Sbjct: 757 FSDQGPGIPPQELDQIFQPFVQSSK-TKDGSGGTGLGLAICRKIIDAMDGTISAKNKPDG 815 Query: 465 GVEVIAILPNTRVLNFIPED 484 G LP+ V P + Sbjct: 816 GAIFRITLPSRSVYETQPGE 835 >gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329] Length = 988 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L A +E R AE+ Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GI++ + T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + G GLGL I++ I+ GG + S+ EG +P Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697 >gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 787 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 7/269 (2%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + +L+ E ++AE AKS+FLA+MSHELRTP+N +LG S++I ET Sbjct: 241 QTQHRVNKLKQLNDDLTEATEKAERAAKAKSQFLATMSHELRTPMNGVLGISQIIASET- 299 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 KE++ I SGQHL+ ++N+ILD S++E + EL + +L ++ + Sbjct: 300 ---KERETKEHVQVILDSGQHLMTILNDILDFSKVEENKLELEAAPFNLPQVLTPVCSAI 356 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +EKNI+++ + + P D +RQ++ NL NAVKFT+ G V + Sbjct: 357 QPLIEEKNIKLYVENEVPENIEFNGDCARIRQILFNLAGNAVKFTSD-GHVLIRAELDEP 415 Query: 399 RGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 R + + SI D G GI + + SF Q + G GLGL I + + GG+ Sbjct: 416 RKRLLLSINDTGIGIPADKQDRIFNSFEQADTSTTRKFGGTGLGLAIVKKLTELMGGEVK 475 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486 ++S G + + LP +P+ Sbjct: 476 LKSVESIGTQFLVELPIPWEEKALPKAAD 504 >gi|168022780|ref|XP_001763917.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162684922|gb|EDQ71321.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 379 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 19/280 (6%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 EL A ++K+AE+ + AKS FLA+MSHE+RTP++ ILG + ++ + P Sbjct: 5 ELRKANEELQVSQKKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLLESDLSP----D 60 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 E + + LL++IN +LDL++IEAGR E+ + ++ +V MLQ RAQ++ Sbjct: 61 QTESLQSVKECADLLLHIINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQR 120 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----- 400 +++ ++D S+ + D ++Q +LNL+ NA+KFT G V V+V T+ Sbjct: 121 GLKLLWEVDKSVPQTLMGDVGKLQQCLLNLVGNALKFTHE-GSVTVSVILTNDTTTAQDA 179 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++D G GI++ + + F Q + G GLGL I Q + GG Sbjct: 180 PDTMFVEFEVRDTGIGISQEILLDMFKPFKQADASTSRLYGGTGLGLCIVQRFVELLGGT 239 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 S++ +G +LP + P++N + K ++ Sbjct: 240 IWAESEVGKGSAFHFLLPF---FSNNPKENPLESSSKMFS 276 >gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 677 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 151/378 (39%), Gaps = 28/378 (7%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 ++ L TP I ++++++ + L +Q Sbjct: 13 GVIVLGSLEMLTPIQQEFIHQIMPSIGIAVNSVEARTKMQQLLQKTQVQAEELQSQQAEL 72 Query: 182 MHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD--- 236 H + + L + T L ++N ++ + + ++ + Sbjct: 73 QHSNEELQSQSEELQSQTEELQSQTEELRQTNDELEERTQDLERQKNDVREKNLALEKTQ 132 Query: 237 ---ETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E + E + KS FLA+MSHELRTPLN++L S+++ G L + EY Sbjct: 133 QAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTD-KQLEYAQ 191 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IH +G LL LIN+ILDLS++EAG+ E+ ISL D + A+ K + Sbjct: 192 TIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENKELAFDI 251 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT----------------VG 394 + + ++ DE+ + Q+I NLLSNA KFT GG + V Sbjct: 252 TVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVSTSLITD 311 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G S+ D G GI + + + +F Q G GLGL I++ + GG Sbjct: 312 LQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQLARLLGG 371 Query: 455 QFLIRSKLREGVEVIAIL 472 + S+ +G L Sbjct: 372 DLQLHSEEGKGSTFTLYL 389 >gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 785 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 160/367 (43%), Gaps = 25/367 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L ++ + L++ + +++L + + AL+ + Sbjct: 143 LRLEFDADLVAEDLWSISVLVLGVGLASLV---------VGLLLIRWALNHWLGGLQKLR 193 Query: 186 DISLAGMLATALSFFTYIT------YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 ++ + + I L + E++ A LE AK +++ R Sbjct: 194 EVVQTLGTGSGETEKLVIEGAPAEIQSLVAMFNQTAVLVREREGSRAALEQAKLAAEKAR 253 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE+ +LAKS+FLA+MSHELRTP+NAILG +++E G + + Y + + + Sbjct: 254 HTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLE----GTELTDKQRSYTHNTASAAR 309 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL+L+N+ILD S++EAG+ L ++R+ ++L K IE+ + + Sbjct: 310 SLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIEVLFDVGTDVP 369 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAE 414 ++ D+ ++QV++NL NAVKFT G V + + + G ++ D G GIA Sbjct: 370 NALVGDDMRLQQVLINLGGNAVKFTER-GEVVIRLRLKATNGAKAFVEFAVSDTGIGIAS 428 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q + G GLGL I Q ++ GG + S EG +P Sbjct: 429 ENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVDSVPGEGSNFHFTVPL 488 Query: 475 TRVLNFI 481 + Sbjct: 489 QIAPSAA 495 >gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 982 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 6/253 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +L ++ ++ E+ N KS+FLA+MSHE+RTPL AI+G +E I Sbjct: 463 QELELRVKQRTHELEDLTIELEKANQVKSQFLANMSHEIRTPLTAIVGHAEAI---IHDD 519 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + E I IH + HLL LIN+ILDLSRIEA ++EL + L +++++ Sbjct: 520 IDKDKVHEDIEVIHGNSLHLLELINDILDLSRIEANKFELEVQPLDLAELIQDLSHTFTS 579 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +AQ+K ++ + P+ + D ++Q++LNL +NA+KFT G+V +++ Sbjct: 580 QAQQKQLDFTIEHQLPAPFIIHIDSLRLKQILLNLCANAIKFT-ESGQVMLSITQQKE-E 637 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++ D G G++E + V F Q +I G GLGL ++ + G + S Sbjct: 638 LVFTVTDTGIGLSEEHLAQVFEIFTQADNSISRRFGGSGLGLTLSNQLAKLMLGNIEVTS 697 Query: 461 KLREGVEVIAILP 473 +L +G LP Sbjct: 698 ELGKGSCFCLTLP 710 >gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM 12163] Length = 924 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D ++RA Sbjct: 242 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 301 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ + N T ++Y+ I RS +LL Sbjct: 302 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 357 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ L L + E +++L A EK +E+ I + Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417 D M+Q+I+NLL NA+KFT G + + V + + I D G GI+E + Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 476 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q +I G GLGL I Q ++ GG+ S+L G + Sbjct: 477 SKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531 >gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] Length = 988 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L A +E R AE+ Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GI++ + T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + G GLGL I++ I+ GG + S+ EG +P Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697 >gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 570 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 379 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 551 ESREGEGSCFWFTHP 565 >gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB] gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB] Length = 1560 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 8/260 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + L + + + AE + AK+ FLA+MSHE+RTP+NAI+G + + + Sbjct: 952 ELNSYRQHLEQLVAERTEELNHAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQ 1011 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 T ++ + +G + + HL+++IN++LD+S+IEA + +L + SL + Sbjct: 1012 RST----SDPEQNKRLGKVADAAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAA 1067 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 ++ RA K + + IDP+L V D ++Q++LN LSNA+KFT G + V Sbjct: 1068 CELVTQRADAKRLPVTCIIDPALPPVLCGDPLRIQQILLNFLSNAIKFTERGKIDIRVQA 1127 Query: 394 GWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 SG G I + D G GIA + F QG + G GLGL I++ + Sbjct: 1128 LQKSGDGILIRCAVSDTGIGIASDAQRKLFVPFEQGDASTTRRYGGTGLGLAISRRLAEA 1187 Query: 452 HGGQFLIRSKLREGVEVIAI 471 G+ + SKL +G Sbjct: 1188 MHGEIGVDSKLGQGSTFWFT 1207 >gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 624 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ +++ +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 380 ITRLKDTEAMLILAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSGLL----PYIEDA 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E YI I+ + + LLN+IN++LDLS+IEAG ELS ++L D++ E Q R Sbjct: 436 EERDRYIALINHNNELLLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQ-RNV 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D ++QV+ NL+SNA+K T G V ++ T IS Sbjct: 495 PEGVTLKTRYPAIPRLIEQDPMRIKQVLSNLVSNALKNTTQ-GYVEISYE-TGQSEARIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + ++ + F + S QG GLGL I +SI+ + G+ + S + E Sbjct: 553 VSDTGCGIPQEKLGVIFERFEKTD----SFVQGAGLGLSICKSIVEHMNGRIEVISAVGE 608 Query: 465 GVEVIAILP 473 G P Sbjct: 609 GSTFTVTFP 617 >gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 637 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 15/265 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + E ++RAE+ + KS FLA+MSHE+RTPLNAI+GFSE+I Sbjct: 258 HDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEIIA----VTE 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY+ I R+ LL LIN+ILDLSRIE+G+ E+ + + +V E + QL+ Sbjct: 314 SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + N+E+ D + QV+ N LSNA+K T G + + + G Sbjct: 374 MKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEK-GSITLGLKH-EGPWLK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GI++ ++P + T F + QG GLGL I +SI+ GG+ + S+L Sbjct: 431 LYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRIEVTSEL 486 Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487 +G LP IP++ E Sbjct: 487 GQGSMFALYLP----YQEIPKEVAE 507 >gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] Length = 571 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S+F+A+++HEL+TPL +I GF+E ++ + ET +++ I+ L LIN+I Sbjct: 348 RSQFVANVTHELKTPLTSIRGFAETLK----YVEDRETKDKFLNIINDESDRLTRLINDI 403 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS IE + IS+ +++ + + +++ A++KNIE+F D + D Sbjct: 404 LALSHIENSN-SMKLENISINEMLEDIVYLMENSAKDKNIELFIVGDKMQP-IKGDRDRF 461 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+++NL+ N +K+T GG+V++ + ++D G GI++ + + F + Sbjct: 462 KQMMINLVDNGIKYTEEGGKVYIGAK-KEDNNCIVWVEDTGVGISKEHVERLFERFYRVD 520 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A ++ G GLGL I + I+ GG I S+ +G + I +P Sbjct: 521 KARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIPIK 567 >gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas campestris pv. campestris str. B100] gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas campestris pv. campestris] Length = 767 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 20/345 (5%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 ++ A V L+ A + Q + I AL + Sbjct: 1 MAARAGGLRGWSTLVALAALVAASAAALQWLGVAGPWRIVTTAASVLALVCGICTAVAAY 60 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDE----------TRKRAEEENLAKSRFLASMSH 258 +++ + + + DD + ++ AE +LAK FLA+MSH Sbjct: 61 RASRTLSALTRQLDDTNTAQARMQQELQRHGELEQELLRAKQAAEAASLAKGEFLATMSH 120 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN I+ E+I + ++ + S LL ++++ILD S++EA + Sbjct: 121 EIRTPLNGIIPMLELISRGQLSL----DQRDMLQTATGSSLQLLRIVDDILDYSKLEANK 176 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 EL + +L +++ ++Q A+ K + + I+PS+ V D +RQV+ NL+ Sbjct: 177 LELEITTFNLRELLDGVAQLMQRTAEGKQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIG 236 Query: 378 NAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + + ++D G GIA + + SF Q + Sbjct: 237 NAIKFTER-GSVDIQLRRLGETRAQHLLRFQVRDTGIGIAADQQARLFRSFAQADASTTR 295 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 G GLGL I + I+ GG+ + S+ G +P +V+ Sbjct: 296 LYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVI 340 >gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103] gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103] Length = 928 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 27/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL L I+ L + L V P+ +ST + LD + G L Sbjct: 196 VFIATLMLLFCLCIAMLFAYRLMRDV---TGPIRNMVSTVDRIRRGQLDSRVEG---HML 249 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + + E I +LE+ D +KRA+E Sbjct: 250 GELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVELDLAKKRAQEAA 309 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN +LGF+ + + T ++Y+ I RS +LL++IN Sbjct: 310 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRT----TQRDYMLTIERSANNLLSIIN 365 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD SR+EAG+ L L + E +++L A EK +E+ D S+ V D Sbjct: 366 DVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNVIGDA 425 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVL 421 ++Q+++NL+ NA+KFT G +++ V + I ++D G GI+E + + Sbjct: 426 LRLQQILINLMGNAIKFTEK-GTINLRVEQHTITATHVELEIQVRDTGIGISEEQQAQLF 484 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ G+ S+ G Sbjct: 485 QAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWVR 534 >gi|239626628|ref|ZP_04669659.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239516774|gb|EEQ56640.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 961 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 11/305 (3%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 LA +S + + ++ + D+ E E + + A+ + Sbjct: 387 HLLADGEYHWISTQIIYVDNPYSDDMLAILISRRIDEQRHEEEQQRLALESALDSAKAAS 446 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKSRFL++MSH++RTP+NAI+G + + + + E + I+ SG+HLL+LIN Sbjct: 447 NAKSRFLSNMSHDIRTPMNAIIGMTAIAAAHI---DDRDRVLECLKKINLSGKHLLSLIN 503 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADE 365 ++LD+S+IE G+ + + + ++V + +++ +A + + + P +V D Sbjct: 504 DVLDMSKIENGKLSMRDEPFNFPELVADAAELIRSQANAGRLAMDVCLSPMKHENVVGDP 563 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTV 420 MRQV +N+LSNAVK+T GG V + D G G+ + + Sbjct: 564 LRMRQVCINILSNAVKYTPPGGFVRIEAWQEESPVLGYANYVFRCTDTGVGMEPSFLEHI 623 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + G GLG+ I ++I+ G + S +G +P L Sbjct: 624 FQPFERARDHAGMRVAGTGLGMAITKNIIDLMNGDIHVESSPGKGSVFTISIPLK--LQD 681 Query: 481 IPEDN 485 P++ Sbjct: 682 APKEQ 686 >gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens] Length = 1056 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 12/294 (4%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + I + + + I+E + ++ ++R AE AKS FL MS Sbjct: 421 LWVLDIGKIMQRDANGAPTRVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMS 480 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLNAI+G + + + P+ ++YI I R+ +HL+ IN +LDLS+IEAG Sbjct: 481 HEIRTPLNAIIGMAHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAG 536 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + + + L ++V + +++++ RA+EK + + I SL D + QV+ NL+ Sbjct: 537 KLSMEQVGFDLRELVDDVLLLVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLV 596 Query: 377 SNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT G V + V W S+ D G GI++ + + F Q +I Sbjct: 597 DNAIKFTEA-GHVCIGVCLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSIS 655 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I++ I+ G ++S+ +G L+ +P + + Sbjct: 656 RRYGGSGLGLTISKKIVQLMQGDIWVKSQPGQGATFKFS--VQLSLSPLPLEEN 707 >gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 892 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G+ Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715 Query: 464 EGVEVIAILPNTRVLN 479 G LP V+ Sbjct: 716 TGTTFTFWLPLENVIQ 731 >gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 2153 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 1/246 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AK F++S+SHELRTPL +I G+ +++ L GPL NE K+ +G + + L++ Sbjct: 1907 EADRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPL-NEEQKKSLGVVKNNANRLMD 1965 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+IL++ RI++ + +L+ + + DI R+ L+ + K + + V+A Sbjct: 1966 LINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIKRKRLSFTFDVAADTPPVFA 2025 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D++ + Q++LNL SNAVK+T G V + G + + DNG GI+ + + Sbjct: 2026 DKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2085 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + ++ G GLGL IA+S + HGGQ + S L +G I+P + Sbjct: 2086 FYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGKGSTFSFIIPLRPSTSEASS 2145 Query: 484 DNHEST 489 + E + Sbjct: 2146 EMPEQS 2151 >gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] Length = 1160 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +LE + E+ N +S FLA+MSHELRTPLN+I+ S+++ + + + + Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 E I I+++GQ LL LIN++LDLS++E+G+ L+ +++ + M + A+E Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404 KNI F + D S + D + Q++ N LSNA KFT+ G + + S Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDLIFS 692 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E I + F Q I G GLGL I++ + G+ +RSK+ E Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752 Query: 465 GVEVIAILP 473 G LP Sbjct: 753 GSTFFLKLP 761 >gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus 16] gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus 16] Length = 573 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 149/308 (48%), Gaps = 8/308 (2%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAEL 228 + AL T A ++ I L G + + T F+ ++ E+ + L + Sbjct: 131 INSALITGAQGTITDSIIVLLGEEVGQFTLESRDTLSRFRPLLERALIDIERTEQLQQLV 190 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 ++ + RAE+ N AKSRFLA MSHELRTPL+A+LG+ +V+ ++ Sbjct: 191 DIKTRQLKSAQVRAEQANQAKSRFLAMMSHELRTPLSAVLGYVDVLLADSKCDH----QI 246 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + + S + LL LIN+IL+LSRIE+G + + ++L + + + + K + Sbjct: 247 EILEKMESSAELLLVLINDILELSRIESGEFRIKCQWVNLKNELEFMLEHFYALSDAKGL 306 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 ++ +D + SVW D + Q++ NLL NA+KFT G V + T + I ++D Sbjct: 307 KLNVNLDIDAHHSVWVDPARILQIVFNLLGNAIKFTHA-GHVSLHAEVT-SQELIIEVED 364 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI I TV F Q +I G GLGL I++ ++ G + S+ +G Sbjct: 365 TGIGIDPSRIETVFNQFKQADDSITRRYGGSGLGLTISKHLVTLMNGSIRVESEKGKGSR 424 Query: 468 VIAILPNT 475 LP + Sbjct: 425 FKIKLPIS 432 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 17/319 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 I + L I+ A + + + N +E I + + Sbjct: 331 VFAMITDITPLRIAQANLKTAYDELEKRVVERTDELNKTNRLLTSE----IHIRKQTEKE 386 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + ++ AE+ LAKS FLA+MSHE+RTP+NAI+G + +I++ + + T ++Y+ I Sbjct: 387 IIKAKEAAEKATLAKSEFLANMSHEIRTPMNAIIGMTHLIKMTEL----SATQRDYLNKI 442 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S + LL +IN++LDLS+IEAG + L ++ + ++ RA EK +E + Sbjct: 443 DISAKSLLGIINDVLDLSKIEAGMLTVESVGFKLEQVLEQLTTIVSPRANEKKLEFLISV 502 Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGP 410 ++ D M Q+++NL +NAVKFT G V ++ ++KD+G Sbjct: 503 GKDVPPAIQGDPMRMAQILINLCNNAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGI 562 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI- 469 GI G+I + F Q + G GLGL + + ++ GG+ S+ +G Sbjct: 563 GIKPGKIQELFQPFTQADASTTRKYGGTGLGLSLCKQLVDLMGGEIGAESEFGKGSLFWF 622 Query: 470 -AILPNTRVL---NFIPED 484 P R +P++ Sbjct: 623 EVTFPIYRDEVESATLPQE 641 >gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1480 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 135/265 (50%), Gaps = 8/265 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + A+ + AKS FLA+MSHE+RTPLNA++GFSE+++ +++ P Sbjct: 1083 MTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSELLQNQSLSP--- 1139 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I+ +G LL LIN+ILDLS+IEAG + I + E + + Sbjct: 1140 EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCGEINAIFTQKVM 1199 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----G 400 EK + ++ L +W D + MRQV+LNL+ NAVKFT GG V + V + Sbjct: 1200 EKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGG-VTLKVEFRREGPEAGT 1258 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I+I D G GI+ V F Q + A +G GLGL I+Q ++ G+ L+ S Sbjct: 1259 LEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIRKMDGRLLLES 1318 Query: 461 KLREGVEVIAILPNTRVLNFIPEDN 485 + G +L + R PE Sbjct: 1319 EPGRGSCFTVVLEHVRYEEGAPEQA 1343 >gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM 17393] gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM 17393] Length = 580 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 329 ITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAEDV----SE 384 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I ++ LL LIN+ILDLS+IEAG E + I + ++ E ++R Sbjct: 385 EERTEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQT 444 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ I ++ D++ + QV+ N +SNA+KFT G + Sbjct: 445 NANVAICAVTPLEGLLLYTDQRRVTQVLNNFISNAMKFTNT-GSITFGYEEPKDGYIRFF 503 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F + S +QG GLGL I+Q+I+ G+ + S+L + Sbjct: 504 VTDTGTGIPPEKVADIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVASELGK 559 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 560 GSTFWFTLPYEK 571 >gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 763 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 106/487 (21%), Positives = 192/487 (39%), Gaps = 31/487 (6%) Query: 11 DVGLLISPTGDHLGLEYPS---KMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 DV ++ P + P + +F R + + ++++A + Sbjct: 15 DVDAVLPPASTRRFVAAPPLVPEPEFSRREGLSF---------LTFVAIVVMAGLAHLTG 65 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW------ 121 + L T A ++ + + + R + +A + W Sbjct: 66 APMFISVALLATGLAGLAMHLRARRSEHRTAALLDETTARSRAEIETLADRM-WEMQESD 124 Query: 122 ----TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L+ + + A + A + + L V + Sbjct: 125 ERFRGLIDALGDLVIHRDRDGYIVYANKVFADLVE-IDQRDLAGKTLAELGIEVGMVPDA 183 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 A L + + + + + I + A+S Sbjct: 184 AFSDHECLSSTDVSISTPSGQRWFSWIELSVRDKDSGAVSHRAIARDITARKRAESSLIT 243 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+RAE + AKSRFLA++SHE+RTP+N I+G + ++ ++ P + Y+G + S Sbjct: 244 ARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADTSLSP----EQQTYVGAVSTS 299 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL LI ++LD S+IEAGR++ +S+ +I I +L RA K+I + ++P Sbjct: 300 ASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPD 359 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHV-TVGWTSGRGQYISIKDNGPGIAE 414 + + AD +RQV+LNL+ NA+KFT GG V + + +I D GPG+ + Sbjct: 360 VPQLITADPGKVRQVLLNLIGNAIKFTDSGGVLVSIARARTETSDRICFTIADTGPGLHD 419 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ + F Q G GLGL I++ ++A GG + S+L +G E + +P Sbjct: 420 ADLERIFEEFEQADGTSTRTHGGAGLGLAISRRLVAAMGGTISVSSRLGQGSEFVFEVPA 479 Query: 475 TRVLNFI 481 T Sbjct: 480 TAATEAP 486 >gi|256842335|ref|ZP_05547838.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256735942|gb|EEU49273.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 943 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V T + D G GIAE Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 724 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784 Query: 475 TRVLNF 480 ++ Sbjct: 785 GKIKES 790 >gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] Length = 1105 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 127/249 (51%), Gaps = 3/249 (1%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +LE + E+ N +S FLA+MSHELRTPLN+I+ S+++ + + + + Sbjct: 515 EDLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEK 574 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 E I I+++GQ LL LIN++LDLS++E+G+ L+ +++ + M + A+E Sbjct: 575 DM-EKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKE 633 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYIS 404 KNI F + D S + D + Q++ N LSNA KFT+ G + + S Sbjct: 634 KNISFFVE-DSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFS 692 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E I + F Q I G GLGL I++ + G+ +RSK+ E Sbjct: 693 VTDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGE 752 Query: 465 GVEVIAILP 473 G LP Sbjct: 753 GSTFFLKLP 761 >gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR] Length = 2322 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 25/319 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q L E E +++ E + E+ Sbjct: 1746 VGISLANAFLYRNASKVSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1805 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + + Y+ I LL LIN Sbjct: 1806 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1861 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ +++ ++ + +D + V D Sbjct: 1862 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1921 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V I+ + D G GI+ ++ + Sbjct: 1922 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 1981 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L VL+ Sbjct: 1982 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2037 Query: 481 IPED-------NHESTQYK 492 P++ + +STQ K Sbjct: 2038 APKNAVVKTPWSQDSTQEK 2056 >gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 916 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 10/253 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + AKS+FLA+M HE+RTPLNA++G S + + + Y+ I S + LL Sbjct: 433 QAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDS----KQRGYLEKIGSSSRTLL 488 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 N+IN+ILD S++EAG+ EL ++ ++L +++ M +AQEK IE ++ P L + Sbjct: 489 NIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKKL 548 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEI 417 D + QV+ NL++NAVKFT G V V + + ++D G GIA ++ Sbjct: 549 VGDPLRLTQVLNNLIANAVKFTEK-GEVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQM 607 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + T F Q + G GLGL I++ ++ G+ + S G +P Sbjct: 608 GKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVPLAVP 667 Query: 478 LNFIPEDNHESTQ 490 P + Sbjct: 668 DAVNPVAQPREQE 680 >gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM 17244] gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM 17244] Length = 872 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++AE+ N AKS FL+ MSHE+RTPLN I+G + E + + E + + Sbjct: 347 QESLKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMV-TLARENINNKSKEI--DCV 403 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I S +HLL LIN+ILD+S+IE+G+ E+ + V + + +A+EK I+ Sbjct: 404 NKISASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSLFFSQAKEKGIKFK 463 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQYI--SIK 406 + ++ V D Q+I+NLLSNAVKFT GG + +++ +I + Sbjct: 464 SVLIGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLKEEDNKVWIRFEVS 523 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + F Q ++ G GLGLPIA+ GG ++S++ +G Sbjct: 524 DTGVGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLGGNISLKSEVGKGS 583 Query: 467 EVIAILPNTRVLNF 480 LP TR+ Sbjct: 584 TFTVDLPFTRIPEP 597 >gi|229068657|ref|ZP_04201955.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185] gi|228714404|gb|EEL66281.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185] Length = 709 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 264 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 323 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 324 LNSILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 382 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ ++ + D K + Q+I NLLSNA KF Sbjct: 383 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 442 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 443 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 501 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 502 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 544 >gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 685 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ A + AK+ FLA MSHE+RTPLN I+G + + + KEY+ I S Sbjct: 300 EKQSAVIASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQSG----PDGELKEYLLKIRSS 355 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 +LL +IN++LDLS+IEA + EL + +++ ++ ++K +E +D Sbjct: 356 STNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAMEQKGLEYQCHLDDD 415 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIA 413 + +W D ++QV+LNL+SNAVKFTA G+V + + G + + D G GI+ Sbjct: 416 VPLKLWGDSLRLKQVLLNLMSNAVKFTAR-GKVGLRIHRQQDDDGDWLHFEVSDTGMGIS 474 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + Q + +I G GLGL I + I G S+L EG +P Sbjct: 475 HEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCESRLGEGSRFHLRIP 534 >gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] Length = 885 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 16/269 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++E+ K +++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITDMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIIGFSRIIAES----ENT 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY + + + LL LINEILDLS+IEAG E S + + L + +E R Sbjct: 544 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 ++E+ + + +D+ + QVI NL+ NA KFT G ++ G+ Sbjct: 604 S-DVELIFEPSDEDIRIDSDKNRIFQVISNLIGNAFKFTTHGS---ISYGYHQEGENIIF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA +I V F + + QG GLGL I ++I+ GG + S+L Sbjct: 660 HVTDTGTGIAPEKIGKVFERFVKA----NNFAQGTGLGLAICKTIIERLGGTISVTSELE 715 Query: 464 EGVEVIAILPNTRVLN---FIPEDNHEST 489 +G LP +PE E + Sbjct: 716 KGTTFTFNLPAKIANEEEKEMPETVLEES 744 >gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 2453 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 139/270 (51%), Gaps = 10/270 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E R+ AE N +KS FLA+MSHE+RTP+ AI+G+ ++I+ + Sbjct: 2051 ITSQRQFEQSLKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDELIDHKIAT 2110 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ + R+G+ LL++IN+ILDLS+IEAG+ ++ S ++ + ++ +RA Sbjct: 2111 A----YLSTVRRNGEFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVCSIMDVRAA 2166 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E +E+ + + +D K ++Q+++NL+ NA+KFT G V + V + Q+I Sbjct: 2167 ENRLELDIFYYGKIPAEIESDPKRLKQILINLVGNAIKFTMK-GSVKIFVSCNDQQLQFI 2225 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + F QG + G GLGL I+Q + GG+ + S+ Sbjct: 2226 IV-DTGIGITTRQQKRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEICVESEKD 2284 Query: 464 EGVEVIAILP---NTRVLNFIPEDNHESTQ 490 +G + + + V P + E +Q Sbjct: 2285 KGSKFTVTIATGDISEVKMIQPRASTEPSQ 2314 >gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] Length = 1317 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 11/262 (4%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L + D L E E+A ++RA+ + AKS FLA+MSHELRTP+NA++G E++ Sbjct: 745 LVARDINDRLKKEHELAT-----AKERADIASEAKSHFLANMSHELRTPMNAVIGLLELV 799 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + ++ P+ ++I + LL ++N+ILD S+IEA + + L ++ E Sbjct: 800 KKTSLSPV----QSDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDE 855 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 ++L K+IE+ ID +L + D ++Q++LNL SNA+KFT G V +++ Sbjct: 856 MALILSASLTTKDIEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQK-GHVLISI 914 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 S + ++D+G G+ ++ + T F Q +I G GLGL I + ++ Sbjct: 915 KMLSENEISMCVEDSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMD 974 Query: 454 GQFLIRSKLREGVEVIAILPNT 475 G + S L +G LP Sbjct: 975 GSIRVESHLGKGTSFHVQLPLE 996 >gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 923 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 157/353 (44%), Gaps = 20/353 (5%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 + ++ A ++A++ L F + P+ + I + Sbjct: 304 AIAHAEDRKTRASLMLLAMAVVAVAGILLVGFWIQTVRRRLSTPMK--MLVDTIGRLSRQ 361 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + +L + L + V L Q L LE A+ + E RA E Sbjct: 362 EFALPVPATGYPDEMGAMAGALEELRVGALKAQ----HLQRLLEKAQEVEIE---RANEV 414 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AK+ FLA+MSHE+RTPLN ILG +++++ + + ++++ + +SG LL ++ Sbjct: 415 SRAKTDFLATMSHEIRTPLNGILGMAQLLDDSPL----SAQQRQWLDAVAQSGSLLLAIL 470 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILDLS+IEAGR EL A S +++R + +A K + + + + D Sbjct: 471 NDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEYPALPARLIGDP 530 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPT 419 + QV+LNL+ NAVKFT G V ++V W + D G GIA +P Sbjct: 531 AKISQVLLNLVGNAVKFTHS-GEVVLSVNWAPDEQRPDRGRMEFRVTDTGIGIARQAVPH 589 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 V F Q +I G GLGL I + I+ GG+ + S L G +L Sbjct: 590 VFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGCGSVFTVVL 642 >gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187] gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187] Length = 1131 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 163/339 (48%), Gaps = 9/339 (2%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +++ +S+ + A S P + + I + + +S + Sbjct: 573 MIVLAIVSSFMAAIFMIA--YSQIPALAPDNMHTITGGMFKAFVMLLIPVGIISGLFVLA 630 Query: 205 YHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ + L + I+ E ++ +K AE N AKSR+LA +SHELRTP Sbjct: 631 RNTSRNAITELKAHMQLLTQEISAHEKTSRKLEQAKKSAETANNAKSRYLAGLSHELRTP 690 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG+++++ + + +EY + R+G+HL +L+ +L++S+IEAGR EL Sbjct: 691 LNVLLGYAQLLSDDR---KLDHQTREYAHILRRNGKHLSDLLEGLLEISKIEAGRLELQR 747 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKF 382 +L ++ E M + A +K +E +L A D++ +RQ+++NLL+NA+K+ Sbjct: 748 VEFNLATMLNELAEMFAMEASQKGLEFEYLPCVNLPVYIATDKQRLRQILINLLNNAIKY 807 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G+V V + + S++D G G++E +I + F + A QG GLGL Sbjct: 808 TRE-GKVIFRVTYR-NQVARFSVQDTGIGLSEHDIQQIFNPFERIQTHNTRAIQGTGLGL 865 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I+ ++ GG +S+ G + + V + + Sbjct: 866 TISHALANLMGGDISCQSQPDVGSNFTLTMMMSAVESPV 904 >gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ ++++SHELRTPL +I+GF+E++ L+ E ++Y+G IH+ L + Sbjct: 418 EVDRLKTELVSTVSHELRTPLTSIIGFTELLR---FRKLSAERSEKYLGMIHQETLRLED 474 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI+ +LD+ R+E+G+ L I+ + I + Q +Q +I D V+ Sbjct: 475 LISNLLDVQRMESGQQTYHNEPERLSAILEQAIAVHQGSSQHHHITFDCTED---VYVYG 531 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q+ +NLL NAVK++ GG ++V V ISI+D+G GI + +P + Sbjct: 532 DRTRLNQLFMNLLHNAVKYSPRGGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDK 591 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + + G GLGL I + I HGG S + +G LP Sbjct: 592 FYRVDNSASRKIGGTGLGLAICKEIAEGHGGTIHATSNIGKGSMFTVSLPK 642 >gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 148/256 (57%), Gaps = 2/256 (0%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + ++ + A+ + KS FLA+MSHELRTPLNAI+GFSE I+ +E Sbjct: 28 RQRSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQHIAASGKPSEKT 87 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 EY I +G+HLLN+I++ILD+++IE+G + L+ + ++V CI++++ R +EK Sbjct: 88 GEYATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDACIVLIEPRIREKK 147 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + K DPSL V D + ++QV++NLLSNA KFT GGR+ + T G I++ D Sbjct: 148 QVLEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVAD 207 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ + +I LT FGQ + +G GLGLPIA ++ HGG+F I S+ +G Sbjct: 208 TGIGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGEFQIFSEPGKGTT 267 Query: 468 VIAILPNTRVLNFIPE 483 V LP P+ Sbjct: 268 VFFTLPPA--APARPQ 281 >gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 744 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 131/255 (51%), Gaps = 7/255 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A++ R+RAE+ ++AKSRFLA++SHE+RTP+N I+G + ++ + Sbjct: 212 RDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSS- 270 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ I S LL LI ++LD S+IEAGR EL ++ +++ I ++ +R Sbjct: 271 ---EQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVR 327 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGR- 399 A K I + I P++ ++ AD +RQ++LNLL NA+KFT GG + VT G Sbjct: 328 AFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAP 387 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D GPGI + + + F Q + G GLGL I + ++ G + Sbjct: 388 KLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVD 447 Query: 460 SKLREGVEVIAILPN 474 S EG +P Sbjct: 448 SAPGEGATFTVYIPL 462 >gi|301312222|ref|ZP_07218139.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3] gi|300829644|gb|EFK60297.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3] Length = 943 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 548 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 604 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 605 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 664 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V T + D G GIAE Sbjct: 665 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 724 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 725 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 784 Query: 475 TRVLNF 480 ++ Sbjct: 785 GKIKES 790 >gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] Length = 911 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 280 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + E II+L A EK +E+ ++ + V D Sbjct: 337 DVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 396 Query: 366 KGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G V V T + I D G GI+E + + Sbjct: 397 MRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTGIGISESQQSQLFQ 456 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG+ S++ G L Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGSTFRFHL 506 >gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI] gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 2071 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 10/282 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + EL+ L + ++ A+ N AK +FLA MSH Sbjct: 1504 LYASLEESRNQIAGWSQFLEQTVAARTRELQETNELLKQAKEAADAANRAKGKFLAVMSH 1563 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RT LN ++G +E++ + N +EY+ + LL+++N++LD SRIE GR Sbjct: 1564 EIRTTLNGLIGMAELLLDTPL----NGEQQEYVSAVRECADSLLSVVNDLLDFSRIEEGR 1619 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L + + +V + + +++ A++K++ + I P + ++ D +RQV+LNLL Sbjct: 1620 LVLETVSFNPASLVEKSVALVEPGARQKSLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLG 1679 Query: 378 NAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + ++ ++D G GI E + F Q + Sbjct: 1680 NAVKFTER-GEISLSAFVEGREPDSLTVRFEVQDTGIGIPEEARSMLFRPFTQAGPSSAG 1738 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I + ++ GG+ S+ G +P Sbjct: 1739 RYGGAGLGLSICKRLVELMGGRIGFESEEGRGSTFWFSVPFA 1780 >gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 693 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +AL + + P V+ + V + + L + Sbjct: 71 SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 130 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +V + D+ A +E A+ + DE + RAE N+AKSRFLA++SHELRTPLN I Sbjct: 131 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 189 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++ + P + Y+ SG+ LL L++ ILD SRIEAGR +L+ Sbjct: 190 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 245 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 + +V + +L RAQ+K +EI I L+++ D +RQ+++NL NA+KFT G Sbjct: 246 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAG 305 Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V++ + G ++++D GPGI E IP + F QG + +G GLGL Sbjct: 306 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 362 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I + ++ G RS + G +LP + + Sbjct: 363 ITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGAMSPETP 405 >gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 703 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +AL + + P V+ + V + + L + Sbjct: 81 SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 140 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +V + D+ A +E A+ + DE + RAE N+AKSRFLA++SHELRTPLN I Sbjct: 141 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 199 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++ + P + Y+ SG+ LL L++ ILD SRIEAGR +L+ Sbjct: 200 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 255 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 + +V + +L RAQ+K +EI I L+++ D +RQ+++NL NA+KFT G Sbjct: 256 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAG 315 Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V++ + G ++++D GPGI E IP + F QG + +G GLGL Sbjct: 316 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 372 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I + ++ G RS + G +LP + + Sbjct: 373 ITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGAMSPETP 415 >gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 483 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 147/325 (45%), Gaps = 22/325 (6%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAEL 228 + +++ ++ ++ G L +Y+++ + K K+ E + + Sbjct: 157 IAGINSTIRNIREIVQWAIIGGLIIVTILVSYLSWSISKPLKKVEEATNEIALGNYSKRV 216 Query: 229 EVAKSLSDET-------RKRAEEEN----------LAKSRFLASMSHELRTPLNAILGFS 271 E SDE + AE+ N ++ F+A++SHELRTPL A+ GF Sbjct: 217 EHDNQFSDEISELIKSFNRMAEKLNTIENERGTLEKRRNDFIANISHELRTPLTAMKGFL 276 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E ++ + + E+ ++Y ++R ++L +L+N+++DL ++E L + L +I Sbjct: 277 EALQDGLV--KDTESQQKYYAIMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEI 334 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +R+ + LQ + +N +I ++ V D + Q+ N++ NA KFT G + + Sbjct: 335 IRKVALNLQPSIESRNNDIIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFT-ENGSITI 393 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + I DNG GI ++ + F + + E+G GLGL I + ++ Sbjct: 394 KLEEHCKDNVCVKISDNGIGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQL 453 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476 H G+ + S+L G P R Sbjct: 454 HHGEITVESELGVGTTFTIFFPTQR 478 >gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 785 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + + T + + Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I Q I+ GG+ + S+L + Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLN 479 G +P Sbjct: 630 GSTFYFTIPYEEAGE 644 >gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342] gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342] Length = 883 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 617 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESHIGEGSTFTVYIPNLPNGLHDIQLSNLEVA 735 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 736 ATVAEVIPAEVVEET 750 >gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1165 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 94/416 (22%), Positives = 159/416 (38%), Gaps = 14/416 (3%) Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 P ++ + V N L ++ E R LL + Sbjct: 266 ALQVGWPYVLGLFVLIVFVLIWNRRLTVQIAERQRAEAEARRQRSTLLALIN------AI 319 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + Y + + S + L +A+ S Sbjct: 320 PDPIWFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRM 379 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 L+ A F F + L I + + + AE Sbjct: 380 PLETETWLTHADGRRVFYDTLRAAFYDDRGQLLGLVGTGRDITVRKEVEDAMARAKALAE 439 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AK+ FLA+MSHE+RTP+NAI+G S + + P ++Y+ I ++GQHLL Sbjct: 440 QAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDLDP----RQRDYLNKIQQAGQHLLG 495 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362 +IN+ILD S+IEAG+ + L ++ ++ +A K +E+ + D + V Sbjct: 496 VINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQVPCVLL 555 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPT 419 D + Q+++N +NAVKFT G V + + G+ + S++D G G++ + Sbjct: 556 GDPLRLGQILINYANNAVKFTEHGEVEVSIELEKRDGKQVWLLFSVRDTGIGLSPAQQAR 615 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + SF Q + G GLGL I + + GG+ + S+L G LP Sbjct: 616 LFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLPFA 671 >gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1258 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 128/254 (50%), Gaps = 10/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + A +L + RAE + AK+ FLA+MSHE+RTP+NAI+G S + + Sbjct: 587 RDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTEL--- 643 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N ++Y+ I +SGQHLL +IN+ILD S+IEAG+ + ++A+ L ++ ++ + Sbjct: 644 -NPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEK 702 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 K +E+ + + + D + Q+++N +NAVKFT G + V V G Sbjct: 703 TIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTET-GEIVVAVRLAEDLGE 761 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++D G G++ ++ + SF Q + G GLGL I++ + G+ Sbjct: 762 AVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVG 821 Query: 458 IRSKLREGVEVIAI 471 + S+ G Sbjct: 822 VESQPGRGSTFWFT 835 >gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] Length = 931 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 155/363 (42%), Gaps = 36/363 (9%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + + +++L F L + ++ I ++ LA A Sbjct: 396 AVAVVELASLRPFTDAQIKLLEKVIETLGIAITNISGRMEIERLLAESQAQTEELQAQAE 455 Query: 205 YHLFKSNV-----KILSCQAEKDDLIAEL--------EVAKSLSDETRKRAEE------- 244 +S + + Q+E+ +I E E+ ++ EE Sbjct: 456 ELQSQSEELQAQSEEMQSQSEELRMINEQLEERSRDAEMKSEELQAAKEELEEKAKQLSL 515 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + KS FLA+MSHELRTPLN+IL SE++ + + E KE+ IH SGQ LL L Sbjct: 516 SSKYKSEFLANMSHELRTPLNSILLLSEMLAEDP-DQMLTEEQKEFSKVIHTSGQDLLTL 574 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363 IN+ILDLS++E G+ E+S +++ ++ + A+ KN+E + V Sbjct: 575 INDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEFTVSSSEEVPPVFHT 634 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-------------GRGQYISIKDNGP 410 DE+ ++Q++ NLLSNA KFT G V VT + I++ D G Sbjct: 635 DEQRLQQIVKNLLSNAFKFTEE-GSVAVTFEKAAQSDFFGLPLSAYTDDWLKITVLDTGI 693 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + +F Q A G GLGL I++ GG + S+ +G Sbjct: 694 GIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICKVESEEGKGSRFTL 753 Query: 471 ILP 473 ++P Sbjct: 754 VIP 756 >gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 565 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 7/232 (3%) Query: 243 EEENL--AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E++NL + F+A++SHELRTPL I ++E + + + + E ++ I + Sbjct: 337 EQQNLDNMRKEFVANVSHELRTPLTTIKSYTETLLNDGV---DEEYRNRFLSIIDKEVDR 393 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + L+ ++L LS++++ +L+ +L + + + +++ AQ+KN ++ + Sbjct: 394 MTRLVKDLLLLSKMDSNG-KLNLEETNLNEFIENILYKIKIEAQKKNQKLTFCAGEEKRN 452 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D M QV+LN++SNA+K+T +GG V V + YI+I DNG GI + ++P + Sbjct: 453 INIDRDKMEQVLLNVVSNAIKYTNLGGYVRVFTKY-DDDYAYITISDNGIGIPKKDLPRI 511 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + G GLGL IA+ I+ HGG+ I S++ G V L Sbjct: 512 FERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEVGIGTIVYIKL 563 >gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 807 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787 Query: 465 GVEVIAILP 473 G P Sbjct: 788 GSCFWFTYP 796 >gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1203 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E ++ AE NL KS FLA+MSHE+RT +NAI+G ++ + ++ P Sbjct: 667 ITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRTSLTP--- 723 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ S LL +IN+ILD S+IEAG+ EL L ++ + + L+AQ Sbjct: 724 -QQKDYLEKAGFSAHSLLRIINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQ 782 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ + + D + QV++N+LSNAVKFT G + + R I Sbjct: 783 EKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFT-QSGEIELGCEDVGERDHRI 841 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI++ + T+ +F Q + G GLGL I++ +++ GG + Sbjct: 842 TLKFWVRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVE 901 Query: 460 SKLREGVEVIAIL 472 S++ G + Sbjct: 902 SEMGVGSTFSFTI 914 >gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1293 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 25/331 (7%) Query: 169 PVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P++ L ++ ++ + +A L + IL ++ Sbjct: 655 PIIEFLGMPLMLGNDLVGTVGVANRPGGYPPDLLNYLQPLLHTAAGILKALRQRQS---- 710 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 ++A+ + +AEE N AKS FLA+MSHE+RTP+NA++G +E++ + P Sbjct: 711 QQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDTPLTP----EQ 766 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +E+ I SG LL LIN+ILDLS+IE+GR EL E + L ++ C+ ++ RA K Sbjct: 767 REFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKG 826 Query: 348 IEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399 +E+ ++D +L V D+ +RQ++ NLLSNAVK+T G V +T W +G Sbjct: 827 LELAARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDT-GEVVLTASWHAGDLSAPLDS 885 Query: 400 -----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 I+++D+G GI + + P + +F Q A G GLGL I + ++ GG Sbjct: 886 PKRSPRLEIAVEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGG 945 Query: 455 QFLIRSKLREGVEVIAIL--PNTRVLNFIPE 483 + ++ G + + P P+ Sbjct: 946 TIHVENRPGGGSRFVFNIIAPLEFQAPSDPK 976 >gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 608 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 22/253 (8%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E +S F+A++SHEL+TP+ A+ GF+E + + + ET + ++ I+ Sbjct: 359 AIRRLE---RMRSEFVANVSHELKTPVAAVKGFAETLLGGAV--NDEETARSFLQIIYDE 413 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L LI +IL+LS+IE+ R L S + + + + +++ A K I + K D Sbjct: 414 SERLNRLIGDILELSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDE 473 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQ 401 + V ADE +RQ+++NLLSN + +T GG+V VTV Sbjct: 474 I-YVEADEDRLRQIMMNLLSNGINYTPEGGKVTVTVEPVWPASTGRSLLTDEERDDYDRI 532 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I+IKD G GI + ++P + F + A + G GLGL I + ++ H G + S+ Sbjct: 533 RITIKDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVEMHNGSIAVESE 592 Query: 462 LREGVEVIAILPN 474 + G + I LP Sbjct: 593 VGVGTKFIIELPV 605 >gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] Length = 683 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/254 (35%), Positives = 143/254 (56%), Gaps = 7/254 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + A+ R AE N AKS FL+SMSHELRTP+NAILGFS+++ELE + Sbjct: 411 EDITERKAAELSLISARYEAERANKAKSEFLSSMSHELRTPMNAILGFSQLLELEGL--- 467 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ + Y+ I +G HLL LI+E+LDL++IE+GR +L I + +V ECI +++++ Sbjct: 468 -DDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRIDLQPEWIDICTVVEECINLVKIQ 526 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 A ++I++ ++ D +Q+ILNL+ NA+K+ GG VH+ + + Sbjct: 527 ADGQDIKLTHSGMADKV-LYTDRIRFKQIILNLIHNAIKYNRKGGWVHIELKNSDNPGYL 585 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I + D+G GIA + + F + A A +G G+GL + + I+ GG+ + S+ Sbjct: 586 KIIVIDSGIGIAANRLTQLFQPFNRLDAAGS-AIEGTGIGLSLTRRIIEMMGGRIGVESE 644 Query: 462 LREGVEVIAILPNT 475 L G LP Sbjct: 645 LGVGSTFWFELPAR 658 >gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 904 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 159/401 (39%), Gaps = 17/401 (4%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFMLPYAVFLS 166 W++ +V + + L ++A ++ ++ ++L Sbjct: 362 FFAYHPIPVTGWSVGIVVPVREVIAPAVATSEKIEQSRALTDAELNARADALVQTFLWLL 421 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDLI 225 F + + + + + A + + + + S +I + + Sbjct: 422 FGIMATLIPVALVFARSISRPIQALAEGSRRVGAGELDHRIQVDSGDEIQDLALTFNQMA 481 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +L+ + + ++ + KS+F++ SHELRTPL AI G+ ++I G ++ Sbjct: 482 EDLKNKIDEIETANQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREGRGGEIS-A 540 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + + + R+ L +++E+LD+SRIE + L +SL IV E Q + Sbjct: 541 AQRTMLDTVSRNATRLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITEEQQPYLES 600 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + + +I +L V D + QV++NLL NA+K+T GGR+H+ V R ++ + Sbjct: 601 RRHALTLEIADALPRVDGDPDRISQVVINLLGNAIKYTPDGGRIHIRVYPEPDR-VHLEV 659 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAE-------QGVGLGLPIAQSIMANHGGQFLI 458 D G GI +I + F K G GLGL I Q I+ H G+ + Sbjct: 660 TDTGIGIKPEDIGKLFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQAHAGKIWV 719 Query: 459 RSKLREGVEVIAILPNT----RVLNFIPEDNHESTQYKCYA 495 S+ G P + P S + + A Sbjct: 720 DSEYGRGSTFHVQWPIAHEQSQSRETPPAQTQRSEKAQSAA 760 >gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96] gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae Ep1/96] Length = 909 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D ++RA Sbjct: 227 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ + N T ++Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ L L + E +++L A EK +E+ I + Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417 D M+Q+I+NLL NA+KFT G + + V + + I D G GI+E + Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q +I G GLGL I Q ++ GG+ S+L G + Sbjct: 462 SKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516 >gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] Length = 1153 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 104/458 (22%), Positives = 181/458 (39%), Gaps = 27/458 (5%) Query: 47 RVSPILPLFVLL-VANIGTWFTQNPIFPM------WSLITLAVYAANLSLGKKVMNSDIK 99 +P + L + V+ + W T+ + W+ + + + + D+ Sbjct: 484 AFAPFIALLTAMGVSPLLAWLTRGRYYVARESRSEWAPGQMVACSVC---DNRFESEDMA 540 Query: 100 IGEVYVWRIWLLVGQIAI-----------GLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 Y I L + L + + A L+ Sbjct: 541 HCPAYEAPICSLCCTLDSRCHDRCKSGSRAAEQVGAALGVVLPASLASHVNSRVAHYLVT 600 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + ++ V+ + A + LA + A + + Sbjct: 601 VVSLLALLAVIFGVVYDQESTLRGAQGVALQGPFLKVFALLALVAAVGAWWMVLGSESRH 660 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + I + + ++ AE N AK+R++A M+HELRTPLN+IL Sbjct: 661 LAQEESNRQNQLLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSIL 720 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+++++ + + +E + I RSG+HL+ LI+ +LDL+RIEAGR L +A+ L Sbjct: 721 GYAQILLKDGVLSAAP---REAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPL 777 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 + E + M+Q +AQ K + + V AD K +RQ+++NLLSNAV+FT G Sbjct: 778 PAFLDELVRMVQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDE-G 836 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + V + D G GIA + + F +G+ + E G GLGL I Sbjct: 837 TVTLHVDCRRE-VVRFDVVDTGIGIAPQDQQRIFMPFERGAAGRRRGEPGTGLGLTITAL 895 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + + GG+ + S G L V + P+ Sbjct: 896 LTSLMGGELGLVSAPGRGSTFSVRLYLREVSDPGPQAE 933 >gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1187 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + + + + L + + + R A+ N +KS FLA+MSHE Sbjct: 537 YVAVQEDITEKRHQGEELDQHRHHLEELVASRTAELESARTSADAANQSKSAFLANMSHE 596 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G + ++ T P + ++ + + I + HLL++IN+ILDLS+IEAGR Sbjct: 597 IRTPMNAIIGLTYLLRQNT--PTSEQSVR--LDKIDAAALHLLSIINDILDLSKIEAGRL 652 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL ++ SL ++ ++ +++ K + I + D +RQ +LN NA Sbjct: 653 ELEQTDFSLAAVLDHISSLITDQSRAKGLTIEMDNGDVPLWLRGDPTRLRQAMLNYAGNA 712 Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 VKFT G + + ++D G GIA +PT+ F Q I+ Sbjct: 713 VKFTER-GTIWLRARLLKETDAGLLVRFEVQDTGIGIAAENLPTLFEVFAQADISTTRKY 771 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + + GG+ + S L +G + R IP + Sbjct: 772 GGTGLGLAITRRLANIMGGEVGVESALGQGSTFWFTVRLQRGHGVIPTEA 821 >gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 633 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 11/282 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + A + E A S +TR+ AE N AKS FLA MSHELRTP+N Sbjct: 223 LGNLARHINNLAAGLELASREQHQAMSQLIQTREEAERANKAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E M + EY S +HLL +IN+ILD SRIE EL Sbjct: 283 VLGMLQLLETTQM----TQEQSEYAALASESTEHLLKVINDILDFSRIERSALELEHIPF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ Q A ++ +++ ++ P + V D +RQ+++NL+ NA+KFT Sbjct: 339 NLAELITSSAQAFQHSALQRGLDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + + W + + + +++D+G GI+ + + +F Q +I G GL Sbjct: 399 Q-GSITIEPQWQALDHELLWFTCAVRDSGIGISPASLELMFDAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GLPIA+++ GG +S+ G +P +P Sbjct: 458 GLPIARTLAERMGGTLRAQSEEGRGSVFTLEIPLALFQQSLP 499 >gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 977 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 10/285 (3%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + I + + + + L + + R AE +K F Sbjct: 523 ADGTVIGVLGIARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKGEF 582 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+NA+LG + ++E + + + E IHRSGQ LL++IN+ILD S Sbjct: 583 LANMSHEIRTPMNAVLGLAYLLERQPL----PDEAHELARQIHRSGQSLLHIINDILDFS 638 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 +IE+GR E+ L +++ + ++ A +K I++ + L S + D + Q+ Sbjct: 639 KIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLESSLVGDPLRLGQI 698 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++NL SNAVKFT+ G+V V V + +++D G GI + F Q Sbjct: 699 LINLTSNAVKFTSD-GQVEVRVESIARSHTEVTLRFTVRDTGIGIDPETQAHLFQPFTQA 757 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + + GG+ + S EG L Sbjct: 758 DASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLEL 802 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 11/388 (2%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + ++ V + + + L G + + + + + Sbjct: 823 RQRRLAEEQLRTSEHRSRV--LLNAIPDMMFRLGLDGRLLDYFGNPEQRLYVPPEIFLGR 880 Query: 154 LSNFMLPYAVFLS-----FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYH 206 + N +LP V + + ++ + +S L I Sbjct: 881 MLNEILPPDVTAQWNNAILAAPQGLQTFEYVLLIDGEPVSFEARLVLNEDEHEVVAIVRD 940 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + E+ L + + AK FLA+MSHELRTPLNA Sbjct: 941 ITARKQMERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNA 1000 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 IL SE + + GPL NE + +I SG+HLL LIN+ILDLS+IEAGR +L I Sbjct: 1001 ILALSEGMLEQLRGPL-NERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQI 1059 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 + D+ +I ++ +A +K +I + S +AD++ ++Q+++NLL+NAVKFT +G Sbjct: 1060 LVSDVCAASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVG 1119 Query: 387 GRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G++ + V + +G I++ D G GI++ E+ + F Q + +G GLGL + Sbjct: 1120 GQIDLIVKADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALV 1179 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + + HGG + S G +LP Sbjct: 1180 RRLAELHGGSVSLESTPGVGSRFTILLP 1207 >gi|83644488|ref|YP_432923.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83632531|gb|ABC28498.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 599 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 103/485 (21%), Positives = 197/485 (40%), Gaps = 27/485 (5%) Query: 4 SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63 +++K KD L + +F+R + V+ + + V L+ I Sbjct: 2 RQEHKAKDSSRL-----------GTAPEEFERAHLIESVKIRCQQTLPAVQGVFLIMAIF 50 Query: 64 TWFTQ----NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI--GEVYVWRIWLLVGQIAI 117 + +W A L + +++M + E+ LL + Sbjct: 51 LFMLWDQAPLSRILLWVGPVAAAQLLRLQISRQIMRQLDSMIFQEILRSDRRLLRSSLIN 110 Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 T A L + A+ N Y FL P+++ Sbjct: 111 QALVGTGIWTVGAVETDNVAFFMTLAISLY--GVGAMVNLASDYRSFLLSIPLLMGQPIL 168 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 V ++ +A LAT ++ + ++ + EK+ L+ ++E + ++E Sbjct: 169 YWSLQGVDELRIAAPLATLTLLMISSVRRSSRTFAESVAMRFEKNALLNKVEAERKKAEE 228 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 A+E N AK+ F+A+ SH+LR PL A+ ++ + + +G ET +E + ++ Sbjct: 229 ALAVAQEANKAKTYFMAAASHDLRQPLYAVSLLTDTLSYQPLG----ETAQEIVSKQRQA 284 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L L N +LDLSR EAG+++ + A+SL +++R Q Q K + + Sbjct: 285 IEVLRTLFNNLLDLSRFEAGKFQPNMKALSLDEVMRPLEAEFQPLCQAKGLTWRCSY--T 342 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 S+++D + + +++ NL+SNA+++T G V V GR +I D GPGI + Sbjct: 343 RVSLYSDLELLSRLLNNLISNAIRYTHK-GEVSVEAT-VEGRQVAFTISDTGPGIERDDQ 400 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F Q + ++ ++G+G+GL I + I ++S +G P Sbjct: 401 VRIFEDFVQLNNPSRNRDKGIGMGLAIVRRINELLDAGLTVQSSPGKGSRFSFYAPLAEY 460 Query: 478 LNFIP 482 P Sbjct: 461 ACLAP 465 >gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 773 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 10/265 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + L ++ + EL+ + ++ AE N AKS+FLA+MSHE+RTP+N I G Sbjct: 362 MGTLEDITDRKIIEEELKEKYKQLELLKEEAENANKAKSQFLANMSHEIRTPMNGIFGVV 421 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++E +G +YI + S L +IN+ILD+S+IE+G ++L+ +L ++ Sbjct: 422 QLLESTDVGA----EQNKYINMLKESTHTLAGIINDILDISKIESGTFKLNNEPFNLTEM 477 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + L + K +E+ +DP++ V DE ++Q++ NL+SNAVK+T G V Sbjct: 478 ISSIYHGLLVDGNAKGLEVGYYLDPNINPQVIGDELKLKQILTNLISNAVKYTEQ-GFVS 536 Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V S ++KD+G GI +G + F Q + + QG GLGL I++ Sbjct: 537 FRVNRISFDEHTEKIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAISK 596 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ G SKL EG Sbjct: 597 NLALLMQGDISFESKLGEGSIFTFT 621 >gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 801 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 144/263 (54%), Gaps = 6/263 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + ++ AE N AK FLA MSHE+RTP+N +LG EV++ T+ + Sbjct: 382 LTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVLQESTL----D 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +E + + ++G++LL LIN+ILDLS+++AG +L A++L ++++E + ++ + A Sbjct: 438 QEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKEVVGLVAVLAS 497 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EKN+ + +ID S+ + ADE +RQ++ NLL NA+KFT G V++T+ + + Sbjct: 498 EKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEK-GSVNITLSMRDPQQLAL 556 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I+D G G+ + F Q I G GLGL +++ ++ GQ + S+L Sbjct: 557 VIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMHGQIRMDSQLG 616 Query: 464 EGVEVIAILPNTRVLNFIPEDNH 486 G + +LP R + Sbjct: 617 CGTQFEILLPVERTQPPRSDQPQ 639 >gi|320589282|gb|EFX01744.1| two-component osmosensing histidine kinase [Grosmannia clavigera kw1407] Length = 1307 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 705 ELKKKINLMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 764 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 765 DTDLTLY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 820 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ +D S+ V D +RQ+ILNL+ NA+KFT G+V +T+ Sbjct: 821 LKTLAVKANEKFLDLTFHVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTER-GKVSLTIR 879 Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 880 KAGQVDCSSGEYAIEFVVTDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 939 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 +++ GG + S+ +G Sbjct: 940 LVSLMGGDVWVESEYGKGSSFYFT 963 >gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 589 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L +++ + + + I A+EKNI + Q I + Sbjct: 418 LVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISLTEEEFMF 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T+ G V + V I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ H G + S++ +G +P Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIPTKP 589 >gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] Length = 2403 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 20/304 (6%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEENLA 248 ++ + +F + +N ++ Q E E AK E E+ A Sbjct: 1826 ISLSNAFLFRRVRKVSATNAAMVESQKRALAAAREAEQKAKIAEAEANHNVKLKEDAARA 1885 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA++SH+LRTP+N ++G SE+++ G ++ Y+ I LL LIN+I Sbjct: 1886 KSVFLANVSHDLRTPMNGVIGLSELLK----GTKLDKEQDNYVESIRVCADTLLTLINDI 1941 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEK 366 LD S++EAG+ ++S +SL + + E + L+ +++ +E + +D P V D Sbjct: 1942 LDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRGLETIEDLDMVPEDLVVMGDPV 2001 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLT 422 + Q+ +NLLSN+ KFT G V VT + S+ D G GI E + Sbjct: 2002 RLHQIFMNLLSNSYKFTPK-GHVKVTAMVVREGKGRVRLECSVSDTGIGIPEEHKSRLFR 2060 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q + + G GLGL I ++I+ GG + S G V L V Sbjct: 2061 PFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGTTVTFQL----VFQRA 2116 Query: 482 PEDN 485 P+D+ Sbjct: 2117 PKDS 2120 >gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 896 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 758 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 10/301 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK----RAEEENLAKSRFL 253 +F I HL + A+ + E S + + ++ N +KS FL Sbjct: 332 AFLGQIGEHLA-VAIYQAQLYAQVQEQKNTFEQRVIESTQALRDTLIASQAANHSKSEFL 390 Query: 254 ASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 +MSHELRTPL I+G S + + L + ++Y+ I SG+HLL++INEIL+ Sbjct: 391 GNMSHELRTPLTCIIGLSGTLLHWSQEGLNLPVDKQRKYLDTIQNSGKHLLDMINEILEY 450 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMR 369 S +++G+Y LS SL + + + + ++ + I + I+P S AD + ++ Sbjct: 451 SNLQSGKYVLSVRYFSLTKVAKNVMQRVSDESEHRRINLELDLQIEPQKDSFSADPERVQ 510 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ +LL+NA+KFT+ G+V + V W + ++D G GI E +IP + SF Q Sbjct: 511 QILYHLLNNALKFTSKNGKVTLRV-WLEKNQLCLEVEDTGIGIEEEKIPLLFESFQQLEN 569 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + + G GLGL + + ++ HGG + S + +G +P+ E Sbjct: 570 SRRRVYGGTGLGLALTKQLVELHGGTIEVESIINKGSTFTVRIPSQPQNKAKLVSQSEKN 629 Query: 490 Q 490 Q Sbjct: 630 Q 630 >gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 899 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +LE+ + E++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 488 ITQLELMRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISES----DNA 543 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY + + + LL LINEILDLS+IE+G E + + L + +E R Sbjct: 544 EERREYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCP 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 + +E+ S+ +D+ + QV NL+ NA KFT G V+ G+ Sbjct: 604 Q-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVF 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ V F + + QG GLGL I ++I+ GG+ + S++ Sbjct: 660 YVKDTGLGIEPEKLGRVFQRFAKL----NNFAQGTGLGLSICKTIIERLGGEIAVSSEVG 715 Query: 464 EGVEVIAILPNTRVLN 479 G LP V+ Sbjct: 716 TGTTFTFWLPLENVIQ 731 >gi|317049304|ref|YP_004116952.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b] gi|316950921|gb|ADU70396.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b] Length = 908 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 95/361 (26%), Positives = 161/361 (44%), Gaps = 27/361 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL L I+ L + L V P+ ++T + LD + G L Sbjct: 177 VFVATLLLLFCLCIAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + + E I +LE+ D +KRA+E Sbjct: 231 GELSILKNGINAMAMSLTAYHEEMQQNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ + + ++Y+ I RS +LL++IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLST----NQRDYMSTIERSAANLLSIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E +++L A EK +E+ ++ + V D Sbjct: 347 DVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHEKGLEMTVCLEKQVPDNVIGDP 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 ++Q+++NL+ NA+KFT G + + V + I + D G GI++ + + Sbjct: 407 LRLQQILINLIGNAIKFTEQ-GHIDLRVELRNTNATRVALEIQVHDTGIGISDQQQTQLF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +F Q +I G GLGL I Q ++ GG+ S+ EG + N Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVHEMGGEIAFHSRQGEGSTFWVHIQLDLNPNAP 525 Query: 482 P 482 P Sbjct: 526 P 526 >gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107] gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107] Length = 916 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 7/285 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 L + + + + D+L +E + + AE + AKS+FLA MSH Sbjct: 208 LTIRFNAMLDRLQSQDQQLREQHDELELRVEERTAQWRQATASAEAASQAKSQFLAVMSH 267 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ILG + ++ + P K + RSG+ LL +IN+ILD S++EAG+ Sbjct: 268 EIRTPLNGILGMTNLLLETELTP----KQKRFARVARRSGEDLLLIINDILDFSKVEAGK 323 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 EL L +V + A K +E+ S D + QV+ NLLSN Sbjct: 324 LELEIHPFQLNLLVEDLAERYAPIAHAKGLELLCNTPLPPLSAEGDAARLAQVLTNLLSN 383 Query: 379 AVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 A+KFT G V + + + + ++D G GI + + +F Q ++ Sbjct: 384 AIKFTERGEVTLEVKLLLREDNLLHLHFGVRDTGIGIRVEQAERLFNAFTQADSSMTRRY 443 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I+Q ++ GG + S+ +G L V + Sbjct: 444 GGTGLGLAISQCLVELMGGHIALESEPGKGSYFYFELRLPAVADT 488 >gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 896 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 870 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 12/270 (4%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 K ++ + AE + AKS FLA+MSHE+RTP+NAILGF+ ++ + + Sbjct: 367 ERREKEKAERAKDTAEAASKAKSEFLANMSHEIRTPMNAILGFTSLLS----PLITDPRQ 422 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 K Y+ I SG++L++LIN+ILDLS+IEAG+ E+ + L + + + Q+K Sbjct: 423 KNYLQSIQSSGKNLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKG 482 Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----Q 401 ++ I + V DE +RQ++ NL+ NA++FT G + ++ +G G Sbjct: 483 LQFITSIASDVPECVLLDEVRLRQILFNLVGNALRFT-ESGWIRLSAWREAGAGDGSFCL 541 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GI + SF Q S G GLGL I++S++ GG ++S+ Sbjct: 542 VMVVEDTGMGIQPEAHNRIFESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSR 601 Query: 462 LREGVEVIAILP-NTRVLNFIPEDNHESTQ 490 G LP + + E++ Sbjct: 602 PGAGSVFEIRLPDVSEAAETDRAEQAETSD 631 >gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 643 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 11/281 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + AE + A + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 223 LGHLARHINNLASALEQASAEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + +Y S HLL +IN+ILD SRIE +L Sbjct: 283 VLGMLQLLETTPLSN----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ + + ++ + V D +RQ++LNL+ NA+KFT Sbjct: 339 NLGELITSSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W Q I S++D G GI + + +F Q +I G GL Sbjct: 399 R-GQVQVDARWQVLDQQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL IA+++ GG+ S+ G +P T Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLTLATPAP 498 >gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 487 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 159/350 (45%), Gaps = 16/350 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + + L + + N + P+ L +++++ + +L Sbjct: 135 PYFNTDVLSVGIPFKDTHNIDRVIMIHAPLKPLADELKHLQMLAIYTAVGGIVLAALLSL 194 Query: 198 SFFTYITYHLFKSNVKILSCQA----EKDDLIAELEV---AKSLSDETRK------RAEE 244 F I+ L K N L+ + ++ D+ E+ A SL+ + + E+ Sbjct: 195 IFSRVISKPLVKMNKAALAMASGNYQQRVDIQTNDEIGLLANSLNTLASRLQEKISQLEK 254 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+ +++HE++TPL + GF+E + + + EY+ +I L L Sbjct: 255 QEQIRREFVTNVAHEIKTPLAVMQGFTETMIDGLV--KTEQERDEYLNNILEEINRLKRL 312 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +NE+LDL R+E G ++ + L +I+ L A EK+I ++ +L V + Sbjct: 313 VNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEIGVEKNLPLVTCN 372 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + QV++NL+ NA++ T GGRV + V + + ++ I D G GIA ++P + F Sbjct: 373 SDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQ-VHLRISDTGEGIAPEDLPMIWERF 431 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G + A G GLGL I + I+ HGGQ + SKL G +LP Sbjct: 432 YKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLPV 481 >gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 743 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 27/291 (9%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E+E A+ + K E + KS FLA+MSHELRTPLN++L ++++ G L++ Sbjct: 13 EMETAQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLSD-K 71 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 EY IH SG +LL LIN+ILDLS++EAG+ E++ +SL D+V + E+ Sbjct: 72 QMEYARTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDDEE 131 Query: 347 NI--EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------- 397 N ++ D ++Q+I NLLSNA KFT G + + V Sbjct: 132 NNLAFQVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQ-GDIKLMVQRLELPPTPLE 190 Query: 398 ---------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + IS+ D G GI + + + +F Q + G GLGL Sbjct: 191 EGRREDWLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGLGL 250 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 I++ + GG + S+ +G LP + E ++S +++ Sbjct: 251 SISRQLARLLGGDLQLYSEEGQGSLFTLYLP-EIIEPIHSESEYKSQEHRS 300 >gi|327540026|gb|EGF26622.1| sensor signal transduction multi-kinase [Rhodopirellula baltica WH47] Length = 1976 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 8/303 (2%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + S + A + + + ++ E + +L K Sbjct: 1336 IADYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHERTESVVRHSKELELTAQQLTATKEK 1395 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + AEE N AKS FLA MSHE+RTP+ ILGF+E++ + ++ + ++ I Sbjct: 1396 LQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVT--DDAERESHLQTI 1453 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H +G HLL+L+N+ILD+S+IEA + E + +V++ I L+ +A EK+I + ++ Sbjct: 1454 HSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLEIQV 1513 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409 + +++D +RQ++ NL SNA+KFT GG V +++ I+++D+G Sbjct: 1514 ESEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKMKIAVQDSG 1572 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + + F Q ++ G GLGL I++ + G + S+ G ++I Sbjct: 1573 IGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQMI 1632 Query: 470 AIL 472 Sbjct: 1633 LNF 1635 >gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC 30864] Length = 1432 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 12/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + E K ++ N AKSRFLA+MSHE+RTPLN ILG ++++ ++ Sbjct: 597 LTDQRRVNAAESEALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSLNN--- 652 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I S Q LL +IN+ILD S+IEAG+ + + + I + +L A Sbjct: 653 -EQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAA 711 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 KN+ + IDP L V D +Q+++NL+SN +KFT G V + Sbjct: 712 TKNLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFT-TSGSVSLRCLLDSEVDDDH 770 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + F Q +I + G GLGL I +S++ GG + Sbjct: 771 LLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGV 830 Query: 459 RSKLREGVEVIAILPNTRVLNF 480 S EG + + Sbjct: 831 DSTRGEGSRFWFTIKFRKPTET 852 >gi|260779140|ref|ZP_05888032.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605304|gb|EEX31599.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 797 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 16/317 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL- 215 + L V P+++A ++ IS ++A + + + + Sbjct: 254 YDLVSKVEAGIIPIMLACVMMGYFLINRFLISPIVIIAQ------KVDDSIEGGIIDLRY 307 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + Q E LI + +++A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 308 NSQDEIKHLIETFNQKTVFLEAEKQKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 367 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E ++++ ++ SG H++ L+NEILD S+IE G EL + L I+ Sbjct: 368 KTDL----SEEQQKHMKTLYESGDHMMTLLNEILDFSKIEQGHLELENNPFPLEAIIGSI 423 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--- 391 + EK ++ + P +D+ +RQ++ NLL+NAVKFT+ G V V Sbjct: 424 NSVYFTLCSEKGLQFKVYSEVPPDRWYMSDKARLRQILFNLLNNAVKFTSR-GYVEVYFK 482 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V I ++D G GIA+ + F Q + G GLGL I + + Sbjct: 483 EVEKQGQNYLEIKVRDTGIGIAKEAQQKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCDL 542 Query: 452 HGGQFLIRSKLREGVEV 468 G + S+L G Sbjct: 543 MNGSVTLTSELGIGTSF 559 >gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 417 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 13/325 (4%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ + + ++ + T L+ L ++ + + + +L Sbjct: 95 IAVDVMKAGAADYLAKHRITPTTLARTIRSAIRLHRAEQAARAAKQKLQITNDQLRQQNE 154 Query: 234 LSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 R + E +N KS F+A++SHELRTP+NAI+GFS+++ + PL+ E Sbjct: 155 ELAHHRAQIEAQNQELIKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPLS-EQ 213 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I + ++LL ++NE+LD S+IEA R EL L + I LQ A EK Sbjct: 214 QLDMVQRIFDNSRNLLTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALAVEK 273 Query: 347 NIEIFQKIDPSLSSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + +I +L S+ D + +R+V++NL+SNA+KFT G V + + IS Sbjct: 274 ALTLKAEIPETLQSIQLTNDPECLRRVLVNLISNAIKFTEA-GEVTLQLHQPQPDQIKIS 332 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+ ++ T+ F Q ++ G GLGL I +S++ GQ + S+ Sbjct: 333 VVDTGIGMTPEQLSTIFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQPGV 392 Query: 465 GVEVIAILPNTRVLNFIPEDNHEST 489 G LP + +P +S+ Sbjct: 393 GSTFTVELPLQ--VQTLPNAKAKSS 415 >gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 785 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + + T + + Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I Q I+ GG+ + S+L + Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLN 479 G +P Sbjct: 630 GSTFYFTIPYEEAGE 644 >gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 512 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 263 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 320 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 321 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 377 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 378 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYLLEDE 436 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 437 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 492 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 493 ESREGEGSCFWFTHP 507 >gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 1038 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 141/286 (49%), Gaps = 17/286 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------------ETRKR-AEEENLAK 249 + L S V++ QAE + A+LE L + + + R EE + K Sbjct: 306 SRSLQDSQVRLEEQQAELEQSNAQLEEQTQLLEVQRDELSRAQGALQAKARDLEEASRYK 365 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN++L + ++ G L ++ K + I +G LLNLIN+IL Sbjct: 366 SEFLANMSHELRTPLNSLLIMARLLADNREGNLTSDQVK-FAETIETAGNDLLNLINDIL 424 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 D+S+IEAG EL + + ++ + Q A EK + + P + +D + + Sbjct: 425 DISKIEAGHIELQIERVRVEPMLEKLRATFQSSASEKGLNFRIETVPGTPDRIESDPQRI 484 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV+ N LSNA+KFT G V ++V +++D G GI E + + +F Q Sbjct: 485 EQVLKNFLSNAIKFTEK-GEVVLSVAEEEDGRIAFAVRDTGIGIPEDQQQAIFEAFRQAD 543 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +I G GLGL I+ + GG+ + S + +G I ++P Sbjct: 544 GSINRKYGGTGLGLSISSELTRVLGGEIRVESTVGQGSSFILVVPK 589 >gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 570 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 153/309 (49%), Gaps = 8/309 (2%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAE 227 PV AL T A ++ I L G A + T F+ V+ E+ + L Sbjct: 129 PVFSALITGAKATITDSIILLIGRKAGQFTLDYRDTLSRFRPLVERALTDIERIEQLQQL 188 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +++ + +AE+ N AKSRFLA MSHELRTPL+A+LG+ +V+ + L E Sbjct: 189 VDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVL----LADLKQENQ 244 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 E + + S + LL LIN+IL+LSRIE+G + + + L ++ + A K Sbjct: 245 LEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYALADAKG 304 Query: 348 IEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 ++ I+ S+W D + Q++ NL+ NA+KFT G V +T + I++K Sbjct: 305 LKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFTHA-GEVCLTANVI-NQHLVITVK 362 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + V + F Q +I + G GLGL I++ ++ G ++SKL +G Sbjct: 363 DTGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSKLGQGS 422 Query: 467 EVIAILPNT 475 LP + Sbjct: 423 TFRIELPIS 431 >gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 785 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PAAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + + T + + Sbjct: 517 E-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYA-GEIRLGFERT-DKNIRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I Q I+ GG+ + S+L + Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICQMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLN 479 G +P Sbjct: 630 GSTFYFTIPYEEAGE 644 >gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226] gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226] Length = 984 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L + + +A A + + Sbjct: 365 RLDQHTAALISVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKREL 424 Query: 218 QAEKDDLIAELEVAKSLSDE--------------TRKRAEEENLAKSRFLASMSHELRTP 263 Q K+ L +E E R++AE+ + AKS FLA+MSHE+RTP Sbjct: 425 QQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTP 484 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG + +++ T+ T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ Sbjct: 485 MNGVLGTARLLQDTTLTA----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHH 540 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L +VRE ++Q RA+EK I + ID ++ W DE + QV+ NL+ N +KF Sbjct: 541 THFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKF 600 Query: 383 TAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G V + V G +++D+G GIAE E T+ +F Q G GLG Sbjct: 601 TEQ-GEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGR-RKLGGTGLG 658 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I++ ++ GG+ + S+L +G LP Sbjct: 659 LAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691 >gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 890 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 6/256 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 L + AK + ++ AE AKSRFLA+MSHE+RTP+ AILG+SE + Sbjct: 350 VRNAQLFEQARQAKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYSESLRESN 409 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + E ++I I RSG+HLL +IN+ILDLS+IEA + E+ ISL +++ + Sbjct: 410 L---SREERNQFIDIIVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLIEDLRSH 466 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + +RA EK + + L +D ++Q++ NL +NA KFT G +H V + Sbjct: 467 IGMRAHEKGLTLDITPKLPLPAHFESDPTRLKQILFNLGANATKFTHK-GSIHFGVSYEK 525 Query: 398 G-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G G+ GE+ + F Q + G GLGL I++ + GG+ Sbjct: 526 DTNLLRFTVTDTGIGLGPGELKKIFEPFVQADSSTTRQYGGTGLGLYISRQLAHMLGGEL 585 Query: 457 LIRSKLREGVEVIAIL 472 + S EG + Sbjct: 586 TVDSSQGEGSRFSVTI 601 >gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 976 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 14/292 (4%) Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + V S E DL +AE RA+E N +KS FLASMSHE+RTPL I Sbjct: 493 RQAVAGTSAAWENRDLSLAETCRTWISQRIASLRADEANRSKSSFLASMSHEIRTPLTLI 552 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG++E++ + P E + + +G++LL L+N+ILDLS+IEAG+ E + Sbjct: 553 LGYTEMLMDQETEPWKTEALR----VVRHNGEYLLALLNDILDLSKIEAGKLETRFEPVD 608 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 D++R+ + Q RA+ K + + L V D +RQV++NL+ NA+KFT G Sbjct: 609 PFDLLRDVVDPFQPRARAKGLRLELTCATPLPRRVVTDPVRVRQVLVNLIGNALKFTDQG 668 Query: 387 G-RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 RV + W R I++ D G G+ ++ + F Q ++ +G GLG Sbjct: 669 SVRVVASAEWEPTTGSARWIEIAVHDTGIGMTPEQMSRLFRPFEQVDPSLTRRHEGTGLG 728 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL---PNTRVLNFIPEDNHESTQ 490 L I++ + GG + S +G P + + P + +S + Sbjct: 729 LAISRRLARMLGGNITVESVAGQGSVFRFRFTPEPESDLALPNPANQPQSGE 780 >gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 807 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 674 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787 Query: 465 GVEVIAILP 473 G P Sbjct: 788 GSCFWFTYP 796 >gi|119493632|ref|ZP_01624281.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119452552|gb|EAW33736.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 936 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 10/328 (3%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 ++ + L + +S +V+A + + ++ Y Sbjct: 384 AVQRIHIQALAILLAISGLALVLATLISRQLVKPLSQLTYVTTNLPDRLLEKQPIYWSKS 443 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 +++ S + L + ++ AE N AKSRFLA+MSHELRTPLNAILG Sbjct: 444 PAIELASLMRNFQQMAETLSEKFQELQKAKQDAEVANQAKSRFLANMSHELRTPLNAILG 503 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F ++ +T +EY+ I S +HLL LINE+LDL++IEAG+ ++ + L Sbjct: 504 FIQLF---DYQSNLTQTQQEYLQTIRYSAEHLLELINEVLDLAKIEAGKTIVNSAHFDLH 560 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + M R + + + + ++ + D++ +RQ+++NL+ NAVKFT G Sbjct: 561 LLFNQLYAMFSQRCEAHGLFLQVHWEDNVPQYLHGDDRKLRQILINLVGNAVKFTQA-GS 619 Query: 389 VHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V S + + I + D G GIA ++ + SF Q + ++G GLGL I+Q Sbjct: 620 ITVQARCLSNQRRMQIDVTDTGQGIAPEDLEAIFASFTQ----TQHNQEGTGLGLTISQQ 675 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475 GG ++S+ +G +P Sbjct: 676 FARLMGGNLTVQSQFGQGTTFTLEIPIE 703 >gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 808 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 143/280 (51%), Gaps = 18/280 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDL--------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 ++ ++NV + + E + I EL+ +S + +++AE + KS FLA+ Sbjct: 539 QWNWIRTNVVVNQFKPENGVIELIGINYDITELKETESKLIDAKEKAETADRLKSAFLAN 598 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLNAI+GFS ++ E N E ++Y+ + + + LL LI++ILDLS++E Sbjct: 599 MSHEIRTPLNAIVGFSSLLVQE----ENPEEREQYMAIVEENNELLLQLISDILDLSKME 654 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AG ++ E + + + + + +++L+A+ +E+ + +D + QVI N Sbjct: 655 AGTFDFVERELDVNLLCEDMVRVMKLKAK-PGVEVVFDRHLPECVIASDRNRLNQVIANF 713 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 ++NA+KFTAI G + + + D G GI + + + F + S Sbjct: 714 INNAIKFTAI-GSIRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIFDRFVKL----NSFV 768 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++SI+ GG + S+ +G LP Sbjct: 769 HGTGLGLSISKSIVEQLGGTIGVESEPGKGACFWFTLPIA 808 >gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355] Length = 922 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 27/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL L I+ L + L V P+ +ST + LD + G L Sbjct: 190 VFIATLMLLFCLCIAMLFAYRLMRDV---TGPIRNMVSTVDRIRRGQLDSRVEG---HML 243 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + + E I +LE+ D +KRA+E Sbjct: 244 GELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVELDLAKKRAQEAA 303 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN +LGF+ + + T ++Y+ I RS +LL++IN Sbjct: 304 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRT----TQRDYMLTIERSANNLLSIIN 359 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD SR+EAG+ L L + E +++L A EK +E+ D S+ V D Sbjct: 360 DVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNVIGDA 419 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVL 421 ++Q+++NL+ NA+KFT G +++ V + I ++D G GI+E + + Sbjct: 420 LRLQQILINLMGNAIKFTEK-GTINLRVEQHTITATHVELEIQVRDTGIGISEEQQAQLF 478 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ G+ S+ G Sbjct: 479 QAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWVR 528 >gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1688 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 20/280 (7%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + L D+ + ++ + + + ++ AEE N AKS F+A++SHE+RTPL+ ++G Sbjct: 542 TKDSQLRMAGTLRDVTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIG 599 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 S+++ + NE ++Y+ I +S Q LL +IN+ILD S++E+ + ++ S+I Sbjct: 600 VSDLLLETVL----NEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSII 655 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG- 387 + + I ML + A ++++ ++ P++ V D +RQV+LNL+SNA+KFT+ G Sbjct: 656 ETGQAVIYMLSV-ATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHV 714 Query: 388 --RVHV--------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 + V + + I+++D G GI + + F Q + G Sbjct: 715 LCDISVVESLNPLHSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGG 774 Query: 438 VGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNTR 476 GLGL I + ++ GG + S + G +P + Sbjct: 775 TGLGLSITKRLIEEVMGGTIHVSSTVGLGSTFKCTIPFKK 814 >gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273] gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272] gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272] gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273] Length = 896 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFMIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIATEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 979 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 169/445 (37%), Gaps = 53/445 (11%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 + L +F+ + + A + W L Sbjct: 269 VALLGYFSNKMWTPFFSYELQPLVAATSINFCAIAMCLFLRDF---LETGRFHPAWDRLL 325 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L G L + + ++ A L+ + Sbjct: 326 LACVFPTGALVVLGPFLPSSHMHTMFNLVFNVAVFLMGFGV------------------- 366 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEKDDLI 225 + + + I L ++ FF ++ + SN+ L+ AE + Sbjct: 367 ---ILSSCLKGRWPGCILLMAWSLVSVLFFIFVATVVGWSNLGYSMGFNLALAAEAVLMS 423 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L R+ + AK+ FLA MSHE+RTP+ AILGF+++ + Sbjct: 424 LPLAYRIRQLKLEREASAMAARAKNLFLARMSHEIRTPMAAILGFTDIALRMQCC----D 479 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++Y+ + S HLL LINEILDL++IEAG+ ++ + L+ + RE ++ A++ Sbjct: 480 QVRQYLLKVKVSAGHLLGLINEILDLAKIEAGKLDVEHKSFDLLCLAREVCEIVAPMAEK 539 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--------- 395 E+ + DP L V+ D +RQV++NL NAVKFT G V + +G+ Sbjct: 540 NGNELLLEADPDLPVHVFGDPMRLRQVLVNLAGNAVKFT-KNGEVRIAMGFAKAVPGAAY 598 Query: 396 --------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + I D GPGI IP + +F QG S G GLGL I+ Sbjct: 599 AVDAHAFSSGRQRFRFEISDTGPGIPAELIPRLFQAFEQGGGDTASRYGGAGLGLNISSR 658 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG + S+ +G L Sbjct: 659 LVELMGGVIGLSSERGQGSTFWVEL 683 >gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1407 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 9/305 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 A+ A+M+ H +T ++ + I D I+ Sbjct: 605 FGAIVAGAVMNGHDSREWTFVRHDGTEFIGLLLTSAVYSMDSVISGYLCVIQD-ISGRRE 663 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + R AEE + KS FLA+MSHE+RTP+N I+G S + + P ++Y Sbjct: 664 TEQNLINARTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTDLTP----RQRDY 719 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +SGQ+LL +IN+ILD+S+IEAG+ + S L + + + + ++ + EK +E+ Sbjct: 720 LKKIQQSGQNLLRIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLEL 779 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIK 406 I + + D + QV+LN SNA+KFT G + V + S Y ++ Sbjct: 780 ILDIASDVPVNLLGDSLRLGQVLLNYASNALKFTEQGEIVIAVRLRERSEDQVLLYFEVR 839 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G++ +I + T F QG + G GLGL I + + GG+ + S +G Sbjct: 840 DTGIGLSSEQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGS 899 Query: 467 EVIAI 471 Sbjct: 900 TFWFT 904 >gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] Length = 1407 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 144/273 (52%), Gaps = 5/273 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++ ++ L AE + R AE N AK FL+ +SHELR PLN +LG Sbjct: 982 MIILVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLG 1041 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++++ + + + + + I RS + LI ++LD+SRI G+ L + LI Sbjct: 1042 WTQLLRKQQL---DEAKTNQALEAIERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLI 1098 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ I ++QL A KNI+I ++D + ++ D+ ++QVI NLLSN++KFT +GGR+ Sbjct: 1099 PVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRI 1158 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +T+ ++ +G I ++D G GI+ +P + F Q + + G+GLGL I + ++ Sbjct: 1159 DITLDYSPFQG-EIQVRDTGVGISADFLPYIFDRFRQADRSPTRSNTGLGLGLSIVRHLV 1217 Query: 450 ANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481 HGG + S +G LP L I Sbjct: 1218 ELHGGTVEVTSPGEGQGATFTVRLPLQTNLEKI 1250 >gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] Length = 896 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN++ + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 + + P++ E T Sbjct: 749 ATIEDVTPDEVIEET 763 >gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 464 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 25/319 (7%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDE 237 L + + M+ + + + ++ L + A+ + A + DE Sbjct: 154 FRPLRLMIFFMIGLIVLNLVIFGRQIIDTIIRPLIDMKRASTVYAQGDFAYRIPIQSDDE 213 Query: 238 TRKRAEEENLA----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + AE N + FLA++SHELRTPL+ I G++E+++ + + + +T Sbjct: 214 IGELAETLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKAL---DEKTR 270 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y I R + L L+N++LDL+++E Y +++ + ++ + + ++ A+ K Sbjct: 271 DQYYQIIERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKG 330 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + I DPS V D + QVI NLL NA+++T ++++ + SI+D Sbjct: 331 VSIITDFDPSQI-VLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTIC-SIRD 388 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + F + + + G GLGL I + I+ H G S L +G Sbjct: 389 EGEGIPPEHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTT 448 Query: 468 VIAILPNTRVLNFIPEDNH 486 V+ LP +P+++ Sbjct: 449 VLITLPL------LPDEDD 461 >gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 627 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 12/270 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + T ++ + N AKSRFLA MSHE+RTPLN I G +++ M Sbjct: 226 EDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEM--- 282 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I S + LLN+IN+ILD S+IEA R EL + ++ + + +++LR Sbjct: 283 -PPAQREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLR 341 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRG 400 Q K + + P L+ V D + Q++ NL+ NA+KFT GG + V + G G Sbjct: 342 TQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFT-AGGEIVVRASSRSRGDG 400 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D+G G+ + T+ F Q + G GLGL I + ++ G Sbjct: 401 TVLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTIT 460 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + S G +P + +P E Sbjct: 461 VASSPGNGSTFCFAVPLKPGV--LPAAAPE 488 >gi|26990865|ref|NP_746290.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985876|gb|AAN69754.1|AE016611_12 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 643 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 11/281 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + E + A + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + +Y S HLL +IN+ILD SRIE +L Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ + + ++ + V D +RQ++LNL+ NA+KFT Sbjct: 339 NLGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLIGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W Q I S++D G GI + + +F Q +I G GL Sbjct: 399 R-GQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL IA+++ GG+ S+ G +P Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLALANPAP 498 >gi|46125481|ref|XP_387294.1| hypothetical protein FG07118.1 [Gibberella zeae PH-1] Length = 796 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 181 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 240 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 241 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTV 296 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ +D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 297 FNALKTLAVKANEKFLDLTYMVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 355 Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ + G+ ++D G GIA+ ++ + +F Q ++ G GLGL Sbjct: 356 TIKESMGQSHVRPGEYAVEFVVQDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLS 415 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG + S+ +G E Sbjct: 416 ISKRLVNLMGGDLWVNSQHGKGSEFHFT 443 >gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] Length = 723 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 9/255 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E E +E + A N AK+ FL+SMSH++RTP+NAI+G + + + + E Sbjct: 286 EEQERQSKALEEAYQTARVANSAKTNFLSSMSHDIRTPMNAIMGMTTIAKANL---DSKE 342 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I S QHLLNLINE+LD+S+IE+G+ +L+ ++L ++++ + + + Sbjct: 343 KVCSCLDKIDTSSQHLLNLINEVLDMSKIESGKIDLTLEEVNLHELLKSVSEICRPLISQ 402 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGR 399 K+ E I V AD + ++QV+LNLLSNA+K+T GGR+ + + Sbjct: 403 KHQEFRSSIAQVRHKEVIADGERLKQVMLNLLSNAIKYTPEGGRISLRINELYSPNPKKS 462 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S D G GI+E P V F + S QG GLG+ I ++I+ G + Sbjct: 463 QYEFSCIDTGIGISEDFRPYVFEPFWRAEDPRISKSQGTGLGMAITENIVRMMNGTIRVE 522 Query: 460 SKLREGVEVIAILPN 474 SK G + A +P Sbjct: 523 SKTGAGSKFTASIPL 537 >gi|311694504|gb|ADP97377.1| sensory box histidine kinase/response regulator [marine bacterium HP15] Length = 647 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 162/365 (44%), Gaps = 28/365 (7%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 + + +S + + V VAL +I+ ++ ++ + + Sbjct: 152 VGTVQVGVSQDVLAERRQDILWTSIAVGVALLLFSILIINHFLGAILAPIRDLAGRIGQL 211 Query: 204 TYH--------LFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLA 248 T +S+ +I++ + + + L L K+ D+ R++AE N A Sbjct: 212 TDGDYQERPLNTHQSSKEIVAIEEQLNQLAHHLAGLKTARDQTLAASEGAREKAEMANQA 271 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLN +LG ++I+ E + + +EY+ +S + LL +I +I Sbjct: 272 KSEFLATMSHELRTPLNGVLGMVDLIQEEPL----TQRQREYLNTARQSTEDLLTVIGDI 327 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI---DPSLSSVWADE 365 LD S++++G +L +L +++ C + A+++ + + K P V D Sbjct: 328 LDYSKMDSGTLKLESQEFNLRELISNCTATYRHLAEQQGLALNLKFFGDWPDNPVVIGDP 387 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 +RQ++ L NA+KFT G +++ G+ + I S+ D+G GI + + Sbjct: 388 ARLRQILAGLADNAIKFTGD-GFINIQAGFFALEDNCIILNCSVSDSGSGIPTERLHDIF 446 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNF 480 SF Q G GLGL + Q ++ GG + + L +G LP Sbjct: 447 NSFEQVDGGNSRLYGGTGLGLSLVQRLVELMGGHIQVETDLGKGSSFRFELPFELADRPS 506 Query: 481 IPEDN 485 PE + Sbjct: 507 EPEPS 511 >gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1] gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1] Length = 994 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 158/359 (44%), Gaps = 14/359 (3%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + + S +AL S + ++ YA V + T+ +++ + L L Sbjct: 202 GIFLVISLNAFVALRFSRYIHDVIEYAREAIARMVNGDIETEVLVTRDINTRDLFNNLEL 261 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + L + E + I E+ D RK A E + KS FLA+ Sbjct: 262 LRNTILQGQKELQHHADQTTEDLRETLETI---EIQNIELDLARKEAVEASRIKSEFLAN 318 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHE+RTPLNA++GF+ ++ + +Y+ I +S + LL +IN++LD S+IE Sbjct: 319 ISHEIRTPLNAVIGFTTLLLKSDIKTF----QYDYLETILKSSEGLLAIINDVLDFSKIE 374 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNI-EIFQKIDPSLSSVWADEKGMRQVILN 374 AG+ L + + ++V + + ML A EK++ +I + D ++Q++ N Sbjct: 375 AGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISLYYSDVPQQIIGDPLRLKQILTN 434 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L++NA+KFT+ G V V V R +S+ D G G+ + + + +F Q + Sbjct: 435 LVNNAIKFTSQ-GEVVVRVMLEDSRNHLCVIKVSVTDTGIGLTKEQQSALFHAFQQADNS 493 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ ++ GQ I S++ G ++ E Sbjct: 494 AARRHSGTGLGLVISKHLVEQMRGQIGIESEIGAGATFWFTF-RAEIVEHQDSARREKN 551 >gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1126 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 11/260 (4%) Query: 223 DLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L ++ KS +E R RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 561 ALFTDVTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL 620 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 K ++ I +SG LL +IN+ILD S+I+AG+ +L +A + + V + +L Sbjct: 621 DT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLL 676 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTS 397 A EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V + Sbjct: 677 SSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFEAAA 736 Query: 398 GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I I+D G GI ++ +V F Q + +G GLGL I ++ GG Sbjct: 737 GGEIMASIRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGY 796 Query: 456 FLIRSKLREGVEVIAILPNT 475 + S+ +G LP Sbjct: 797 LNVESEWGKGSVFTVNLPFA 816 >gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1170 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 3/298 (1%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + L + + + + D+ L A+ + ++ + + KS FLA+M Sbjct: 440 QAELEQTNEQLAEQTEALARQRDQMDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANM 499 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+ L ++++ G L+++ + + I+ +G LL LIN+ILD+S++EA Sbjct: 500 SHELRTPLNSSLILAKLLADNPDGNLSDDQVQ-FARSIYSAGNDLLTLINDILDISKVEA 558 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ E+ L +V + +A EK + ++ L +++ D + + Q++ NL Sbjct: 559 GKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNL 618 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 L+NA KFT G V + V G +++D G GIA + + +F Q Sbjct: 619 LANAFKFTEK-GSVTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRY 677 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G GLGL I++ + GGQ ++S G +LP + E + Sbjct: 678 GGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLPQSYSEPLAVEPTTAPQPSRA 735 >gi|39726367|gb|AAR30126.1| putative histidine kinase NIK1p [Gibberella moniliformis] Length = 1282 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 14/265 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 670 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 729 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 730 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 785 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 786 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 844 Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + G+ ++D G GIA+ ++ + +F Q ++ G GLGL I++ Sbjct: 845 ESMGQNNVRPGEYAVEFVVEDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 904 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ +G E Sbjct: 905 RLVNLMGGDLWVNSEHGKGSEFHFT 929 >gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 736 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AEE + K FLA+MSHE+RTPLNAI+GFS+++ + PL Sbjct: 484 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 541 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E+I I ++ LL LIN+ILDLSRIE+G S + L ++ + QL Sbjct: 542 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 601 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 E +E+ ++ + +D + QV N ++NAVKFTA G + + ++ I Sbjct: 602 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 659 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + + V F + QG GLGL I QSI+ G + S++ Sbjct: 660 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 715 Query: 464 EGVEVIAILP 473 G + LP Sbjct: 716 VGSKFTISLP 725 >gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 771 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AEE + K FLA+MSHE+RTPLNAI+GFS+++ + PL Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E+I I ++ LL LIN+ILDLSRIE+G S + L ++ + QL Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 E +E+ ++ + +D + QV N ++NAVKFTA G + + ++ I Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + + V F + QG GLGL I QSI+ G + S++ Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750 Query: 464 EGVEVIAILP 473 G + LP Sbjct: 751 VGSKFTISLP 760 >gi|166030503|ref|ZP_02233332.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC 27755] gi|166029665|gb|EDR48422.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC 27755] Length = 957 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 11/317 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++L +SL ++ + + ++ K + L ELE + Sbjct: 506 FIQDNLLAVSLIVGISIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A+ N AK+ FL +MSH++RTP+N I+G ++E + E K+ + IH Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKIHE 622 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL+LIN++LD++++E+ + +I+L + +E L +A+EK + + + D Sbjct: 623 SSKLLLSLINDVLDMAKLESDTVVFGDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411 S VW++ +++V++NL +N++K+ + G ++++ + + I+DNG G Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742 Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E I + T F Q + +S G GLG+PI + ++ GG + SKL EG Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802 Query: 471 ILPNTRVLNFIPEDNHE 487 ILP N PE+ + Sbjct: 803 ILPFKIDTNARPEEKED 819 >gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1426 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 86/299 (28%), Positives = 149/299 (49%), Gaps = 12/299 (4%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 ++ +L F + L K+ ++ + I + + + + A+ Sbjct: 707 NLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTGINRDITQERGLEDWLRKAKDEADAA 766 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+NAILG +++ T+ +Y+ S + LL+LI Sbjct: 767 SAAKSNFLANMSHEIRTPMNAILGMLHLVKRTTLTH----QQNDYVSKAQISAKSLLSLI 822 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 N+ILD S+++AG+ EL ++ + +++ E +L + EK++E+ ID + + D Sbjct: 823 NDILDFSKVDAGKLELEKAPFEVEELLCELSTVLSGSSLEKDVELIFDIDKDIPAYLIGD 882 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTV 420 + + Q+++NL+SNAVKFT G V + + S + +S+KD G GIA+ +I ++ Sbjct: 883 KLRLLQILINLVSNAVKFTLE-GSVVLEIKQLSIDPRVSRLSVSVKDTGIGIAKDQIDSI 941 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477 F QG + G GLGL I + + GG + S L EG LP + Sbjct: 942 FDVFSQGESSTARRFGGSGLGLVICRRFVELMGGSLQVDSVLGEGSRFYFTIDLPIADI 1000 >gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 909 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 8/270 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R++A + + AKS FLA MSHE+RTPLNAI+G ++++ + P Sbjct: 504 ITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAIIGITDILAESDLKP--- 560 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + +G++LL LIN+ILD+S+IEA L + A L +L+ +A Sbjct: 561 -EQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDLESTTTNICDILKQKAT 619 Query: 345 EKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 EK+++ ++ V D +RQ++ NL+ NA+KFT G V + +S + Sbjct: 620 EKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQEGEIAVLLDFDSSSQKF 679 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I+D G GI + + + SF Q +I G GLGL I+++++ GG+ +S Sbjct: 680 VRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTISKNLVELMGGRIWFQS 739 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + G +P E TQ Sbjct: 740 EEGSGSSFYFTVPYVPTEAPRELAAPEKTQ 769 >gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 602 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 97/458 (21%), Positives = 172/458 (37%), Gaps = 16/458 (3%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85 + S + + +V + R I + ++ F + + Sbjct: 5 DTGSDRRAEVALTRAYV-PIVRGYLIASSVYYALISLSHPFYEKGFALLLLESLAVAACL 63 Query: 86 NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145 + + +G V L + + + + P L + L Sbjct: 64 YGFGAWRALREGRIVGPGLE-----GVALGMNALFLSNVLAYQILHFEPMKLVYFVLMGL 118 Query: 146 LIALSI-SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + A S S A + + I + + ++ A + + Sbjct: 119 VFATSAPSRRVALGSVSAAVIGLVWMAQKAPGDTINNYAFIGLAGAFAAIGMSTLMRGVV 178 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 ++ + + E + E K+ + AE N AK+ FLA+MSHE+RTPL Sbjct: 179 RREVRARLASEALNVELQRELTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPL 238 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N +LG ++++ + P + + + SGQ LL++IN ILD+S+IEAG+ E++ + Sbjct: 239 NGVLGMAQIMAAGELSP----DQRRRLDTVTASGQSLLSVINAILDISKIEAGKMEINPA 294 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383 L + + A++K ++ +I D +RQV+ NL+SNA+KFT Sbjct: 295 PFDLSAHLDALRQLYGGLARDKELDFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFT 354 Query: 384 AIGGRVHVTVGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 +G V V + + D+G GI E E + T F Q + G GLGL Sbjct: 355 DVG---TVRVFVEGDDKTIVARVTDSGAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGL 411 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 I +++ GG + G LP RV Sbjct: 412 AICKTLSELMGGSISYSTAEGGGACFTVTLPMPRVKPA 449 >gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 790 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217 A+ S +V+ + S + L+ K + ++ Sbjct: 200 AMITSGVILVIVMLCWLGFGTWFRVNSKLDAIIHTLTALINDEEKQTKVKVDGSDELTIF 259 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ Sbjct: 260 AQQVNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 319 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + +E + DI S Q LL L+N+ILDLS+IE+GR ELS + ++V + ++ Sbjct: 320 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMV 375 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + Q +A K +E+ + ++ V D+ ++QVI NL+SNAVKFT G + V V + Sbjct: 376 LFQSKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFT-ESGHIRVDVSYD 434 Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 ++D G GI + ++ T+ F Q + G GLGL I + +++ Sbjct: 435 ELSEKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSM 494 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GGQ + S G + Sbjct: 495 MGGQLIATSTKGVGTCFEFSI 515 >gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 732 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 13/257 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + R +AEE N KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 486 ITERKRIEEELLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTT----DDE 541 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ I + LL LI +ILDLS+IEAG E + + L ++ E ++L+ Sbjct: 542 EEKKQFVSIIESNNVLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKIA 601 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + +E+ ++ D+ + QV++NLL+NA+KFT G +H Sbjct: 602 DT-VELRFTDRMPSCRLYVDKNRLSQVLINLLTNAMKFTKE-GYIHFGYRLVDEDTLEFY 659 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + ++ + F + + + G GLGL I Q I+ GG+ + S + Sbjct: 660 VSDTGCGIPKEQLRNIFERFIKLNNFVS----GTGLGLSICQVIVERMGGRIWVESDEGK 715 Query: 465 GVEVIAI---LPNTRVL 478 G P +VL Sbjct: 716 GATFFFTIKYFPIEKVL 732 >gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 794 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + +++ + AE N AKS FL +MSH++RTPLNA++GF+++ + Sbjct: 399 ETKREMANLEK--AELANKAKSAFLFNMSHDIRTPLNAMIGFTDMAVKNI---DDKAKAL 453 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + +G S +HLL+LIN++LD+SRIE+G+ EL + ++L + +C+ ML+ A++KN+ Sbjct: 454 DCLGKSKLSSEHLLSLINDVLDMSRIESGKVELDLNPVNLDENGEDCVPMLRSLAEKKNV 513 Query: 349 EIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQY 402 D V+ D + QVI+N++SNAVK+T GG V V + Sbjct: 514 HFEFAHHDIQNRYVYVDFLRLNQVIINVVSNAVKYTPSGGSVTVDITQIPSEREGYGLYQ 573 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I IKD G G++ + F + + S +QG GLGL I + I+ G + SK+ Sbjct: 574 IVIKDTGIGMSAEYQQHLFDEFSRERTSTVSKQQGTGLGLAITKRIVDMMEGSIDVESKV 633 Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487 EG + +P + PE + Sbjct: 634 GEGSKFTIRIPMR--IQENPEAVEQ 656 >gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 456 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+A++SHELRTPL +I GF E + + N E ++++ I + L LIN+I Sbjct: 228 RSEFVANVSHELRTPLTSIRGFIETLRSGAI--ENPEAREKFLDIIDFEAERLTRLINDI 285 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS IE + I + + + + +++ A++K+I + + ++ ++ A+ Sbjct: 286 LTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDRF 345 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+++NL+ N +K+T GG V V+ G I ++DNG GI + +IP + F + Sbjct: 346 HQMMINLIDNGIKYTQEGGFVKVST-RLEGEKIIIEVEDNGIGIPKDKIPRLFERFYRVD 404 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + I+ + G+ + S++ +G + Sbjct: 405 KSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRF 448 >gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 10/285 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ ++ Q + + E + ++A N AKS FLA+MSHE+RTP+NAI Sbjct: 122 IRAALRDRERQYRMRIYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAI 181 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG S +++ E +YI + S + LL LIN++LD+++IEA E+ Sbjct: 182 LGLSTILKH---SQPLTEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQ 238 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L ++R+ M+ L+A+EK++++ +D D +RQ++ NL SNA+KFT Sbjct: 239 LDQVIRDIADMMGLKAREKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDS- 297 Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V + V IS+ D G GIA ++ + F Q I G GLGL Sbjct: 298 GEVAIIVASAPQGRHCHITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLA 357 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I++++ GG + S+L G LP L P+ +S Sbjct: 358 ISKTLAELMGGTIAVESELDRGSRFTLALPLR--LADRPDSFPDS 400 >gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1259 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 150/279 (53%), Gaps = 20/279 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + A++ + ++ AE N AKS FLA+MSHELR+PLNAILGF++VI Sbjct: 758 ISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVI---NGSSNLT 814 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I RSG+HLL LINEILDLS+IEAG+ L + L ++ E + +++A Sbjct: 815 TQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKAS 874 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 +KN+++ I+P+L + D +RQ+++NLLSNA+KFT G V + + Sbjct: 875 QKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQK-GTVCLEADLSETSPVCL 933 Query: 402 ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D G GI EI + + F Q I+S QG GLGL I + + Sbjct: 934 IGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQ-QGTGLGLAICKGYIKL 992 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDNHES 488 GG+ + S+ R G +P V IPE++ +S Sbjct: 993 FGGKIEVHSQPRVGTVFDLEMPALPVDIAEIIPENSSQS 1031 >gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis CIP 102891] gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis CIP 102891] Length = 1199 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 9/264 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A LE R A N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 458 AALERFAEKLAVARDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + YI + S LL LIN+ILD S+IEAG+ ++ L +++ ++ LRA E Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASE 573 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 + +E+ I+ + + + D + QV++NL +NAVKFT G ++ V V G Sbjct: 574 RGLELLIHIERDVPTTLVGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKRQGDDVEL 633 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S++D+G G+ + + + + F Q + G GLGL I++ + GG + S+ Sbjct: 634 EFSVEDSGIGMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVESE 693 Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485 +G + T+V + + +DN Sbjct: 694 FGQGSRFSFSI-ATKVSHALKQDN 716 >gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 775 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 158/277 (57%), Gaps = 2/277 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + + + + + AEL +A + ++RAE N AKS FLA+M Sbjct: 498 QVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANM 557 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFSE+++ + GPL +E Y EY DI SG+HLLN+IN+ILD+S+IEA Sbjct: 558 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 617 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ I L ++ E + + A+ KNI + Q+I L +++AD + M+QV+LNLL Sbjct: 618 GHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQVLLNLL 676 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNAVKFT GGR+ + ++I D+G GI +G + + F Q ++ Sbjct: 677 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKG 735 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++S+ HGG I S G + +P Sbjct: 736 GSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 772 >gi|291523429|emb|CBK81722.1| amino acid-binding domain sensor hybrid histidine kinase [Coprococcus catus GD/7] Length = 953 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 159/317 (50%), Gaps = 11/317 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++L +SL ++ + + ++ K + L ELE + Sbjct: 506 FIQDNLLAVSLIVGISIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A+ N AK+ FL +MSH++RTP+N I+G ++E + E K+ + I+ Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL+L+N++LD++++E+ S+ +I+L + +E L +A+EK + + + D Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411 S VW++ +++V++NL +N++K+ + G ++++ + + I+DNG G Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742 Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E I + T F Q + +S G GLG+PI + ++ GG + SKL EG Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802 Query: 471 ILPNTRVLNFIPEDNHE 487 ILP N PE+ + Sbjct: 803 ILPFKIDTNARPEEKED 819 >gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] Length = 775 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 524 ITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAEDV----SE 579 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I ++ LL LIN+ILDLS+IEAG E + I + ++ E ++R Sbjct: 580 EERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQP 639 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ I + ++ D++ + QV+ N +SNA+KFT G + Sbjct: 640 NANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNT-GSITFGYEEPKDGYIRFF 698 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F + S +QG GLGL I+Q+I+ G+ + S+L + Sbjct: 699 VTDTGTGIPPEKVADIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVLSELGK 754 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 755 GSTFWFTLPYEK 766 >gi|229529146|ref|ZP_04418536.1| sensor histidine kinase [Vibrio cholerae 12129(1)] gi|229332920|gb|EEN98406.1| sensor histidine kinase [Vibrio cholerae 12129(1)] Length = 736 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353] gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353] Length = 958 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E + AE N AK+ FL++MSH++RTP+N Sbjct: 410 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMN 465 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E +G I S +HLL LINE+LD++ IE+G+ L++ Sbjct: 466 AIVGLTAIAGANV---ESQDRVIECLGKITESSRHLLGLINEVLDMACIESGKMTLAQED 522 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L ++V I + + E I+ V D ++QV +NL+SNA+K+T Sbjct: 523 FNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTP 582 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 583 DGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTG 642 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 643 LGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 675 >gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1340 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 107/458 (23%), Positives = 174/458 (37%), Gaps = 22/458 (4%) Query: 55 FVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ 114 V P +LI Y A + ++ +G+ + ++V Sbjct: 698 MVDAQYGAFLLAESGVDRPALNLIASYGYQAPWDVPRRFDFGQSLVGQAARTKRTIVVAN 757 Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 +L + L I +L + +++ S F + FL+ + + Sbjct: 758 TPADYLQIASSLGQSAPVALIVLPILFEDQVLGVIELASFSPFAQVHHDFLNLLTETIGV 817 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAEKDDLIAEL--- 228 + I++ D L A + + + + L + Sbjct: 818 NVNTIIANARTDSLLDESQRLASELRARSEELQSRQEDLQLSNAELEEKATLLARQNHDI 877 Query: 229 EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 EV ++ R+ EE + KS FLA+MSHELRTPLN++L + ++ Sbjct: 878 EVKNFEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRN 937 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L+ EY IH +G LL LIN+ILDLS++EAG+ ++ ++L+DIV + Sbjct: 938 LS-PKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQATFSP 996 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-------RVHVTV 393 EK + + P L + D + QV+ NLLSNAVKFT G Sbjct: 997 ITAEKGLRFTVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSGAGAG 1056 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 G G+ S+ D G GIA + + +F QG G GLGL I + + G Sbjct: 1057 GRAPGQAVLFSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLG 1116 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G+ RS+ G LP + + + Sbjct: 1117 GEIQARSEFGRGSTFTLQLPMAPAATTSSDGPQPAAEQ 1154 >gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1205 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 4/281 (1%) Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 K + + L Q ++ E+E+AKS ++ K+ E KS FLA+MSHELRTPLN++ Sbjct: 508 KVSNEELEEQTHILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSL 567 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 L S+ + L+ E E I++SG LL LIN++LDLS+IE+G+ ++ + Sbjct: 568 LILSKDLADNKRKNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVV 626 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386 L +E + +L+A EK +++ D L V D + Q++ NL+SNA+KFT Sbjct: 627 LRKFAKELMSTFKLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER- 685 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G+V V + + S+ D+G GI E + + +F Q + G GLGL I++ Sbjct: 686 GKVQVEIKKQNKDKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISR 745 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ ++SK+ +G LP I E +E Sbjct: 746 ELAKLLGGEIFLKSKVNQGSTFSLSLPIETNEISISEKENE 786 >gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 886 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 90/269 (33%), Positives = 139/269 (51%), Gaps = 14/269 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + +L ++ + ++ A+ N AKS FLA+MSHELRTPLN ILG+++++ Sbjct: 393 QLRTSFTELETRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQILG 452 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E + + IH+ G HLL LIN++LDLS+IEA + EL+ AI L ++ Sbjct: 453 R---AKTLPEKERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGV 509 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + ++R+ +K IE + D +L + + DEK +RQV+LNLL NA+KFT G + + V Sbjct: 510 VEICRVRSDQKGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDK-GSITLKVE 568 Query: 395 WTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + D G GIA ++ + F Q K +G GLGL I+Q I Sbjct: 569 VIASNATMPLPQLKFQVLDTGVGIASDQVNKLFQEFEQVGD-RKRQAEGTGLGLAISQKI 627 Query: 449 MANHGGQFLIRSKLREGVEVIAI--LPNT 475 + GG+ + S L G LP Sbjct: 628 VELMGGKIEVESHLGIGSNFYFQVALPIA 656 >gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 769 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + AEL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 500 RRLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG L Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHRE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I + ++ AD + M+QV+LNLLSNAVKFT Sbjct: 620 RIDLVPLIEESLRFTAIPAAEKNIVIEQRICSGM-ALMADRRAMKQVLLNLLSNAVKFTD 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V ++I D G GI + + F Q ++ G GLGL I Sbjct: 679 NGGRIAVRTRRV-DGAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ A HGG+ IRS+ G + +P Sbjct: 738 SRSLTALHGGRMKIRSREAVGTVISLRIP 766 >gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W] gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W] Length = 896 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 987 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 3/252 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + E ++ A+ N AKS+FLA+MSHELRTPL +I+G++E++ + P+ Sbjct: 458 RNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELL-NRALTPI 516 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ + I +G HLL +IN++LDLS+IEAG ++ + + L +V+ + +Q Sbjct: 517 ANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDTVQPV 576 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ + + DE +RQ++LNLLSNA KFT G++ + + T Y Sbjct: 577 IVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFT-TNGQITLRISGTPE-MVY 634 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++ D G GI + + F Q + G GLGL +++ + GG + S L Sbjct: 635 FAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLESAL 694 Query: 463 REGVEVIAILPN 474 EG LP Sbjct: 695 GEGSTFTLSLPR 706 >gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] Length = 1521 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 10/289 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ F T + + + I + A+++ R+ AEE N AKS Sbjct: 713 IIVRNQVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSA 772 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTP+NAILG ++ + + +Y + + LL+L+N+ILD Sbjct: 773 FLANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLHLLNDILDF 828 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IE+G+ L + ++R+ ++L + K +E+ IDP+L V D ++Q Sbjct: 829 SKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGDSMRLQQ 888 Query: 371 VILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NL NA+KFT +G V + V + ++D G GIA ++ + F Q Sbjct: 889 ILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQA 948 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV--EVIAILPN 474 + G GLGL I+Q +A GG + S+ +G LP Sbjct: 949 EASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITLPL 997 >gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1001 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 22/276 (7%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + + AE N AKS FLA +SHE+RTP+ + + + + ++ Sbjct: 603 QRNRSILAMRQATEEAEAANRAKSEFLAVVSHEIRTPMTVTIAALQ----QVLESSLDDE 658 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y+ + + LL+LIN+ILD S+IEA + L ES +L + + + +L + A++K Sbjct: 659 QRQYLTMANDASDSLLSLINDILDFSKIEAEKLVLEESPFNLRECIENVVAILGVNARQK 718 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQY 402 + + + SL + D+ +RQ+++NL+SNA+KFT G+V V V + Sbjct: 719 GLRLELASNASLPDLLLGDQHRVRQILVNLVSNAIKFTEQ-GQVSVKVDAEQQDDHHLVH 777 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +++ D G GI + V SF Q + G GLGL I + ++ GG + S Sbjct: 778 VAVCDTGIGIDDSLRERVFESFSQADSSTTRKYGGTGLGLAICKGLVEQMGGVIGVESCQ 837 Query: 463 R--EGVEVIAILPNT-----------RVLNFIPEDN 485 +G LP RV +P +N Sbjct: 838 DDTQGSCFYFSLPMRVADDALVPPMDRVAPRLPVEN 873 >gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1082 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 14/276 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I +++ A+ ++ AE+ + KS FL+ MSHE+RTP+NA++G + ++ + Sbjct: 687 EDITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQD----N 742 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EY+ + S +LL LIN+ILD ++IEAG+ EL ++ ++ + + + + + Sbjct: 743 PAPRQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKNK 802 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A+ + + K+D + + + D+ + QV+ NLLSNAVKFT G V + + Sbjct: 803 AEANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFT-RDGTVFLKLELEQLRYD 861 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I+D G GI+ I + F Q + +S G GLGL I + ++ H Sbjct: 862 KVTIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTIK 921 Query: 458 IRSKLREGVEVIAILPNTRV----LNFIPEDNHEST 489 + S + EG + + + +P+ ES+ Sbjct: 922 LVSNIGEGTQFSFSIVFDKAEVDEAEAVPQKEKESS 957 >gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 448 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 167/396 (42%), Gaps = 11/396 (2%) Query: 86 NLSLGKKVMNSDIKIGE-----VYVWRIWLLVGQIAIGLCWTLLTLVEP-GTWTPEYLTI 139 L+ ++ D + V I L + W+ E + Sbjct: 41 RLAALRRYKVLDTPPEPGFERITALAVRLFAVPVCVISLVDECRVWFKSKVGWSGEQVQR 100 Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 +S L + + L+ P V A + L L T Sbjct: 101 DESLCSWAILQKELMVIHDARFDGRLACNPWVQAEPGIRFYAGAPLTSPDGFNLGTLCLI 160 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 T + + L+ A EL ++ ++++R AE N AK FLA +SHE Sbjct: 161 DTQPHATFDEPQRRTLADLAAIVVDELELRLSLESAEQSRLAAEAANRAKDEFLALLSHE 220 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN I+G++++++ G + + E + I R+ + LI ++LD++RIE G++ Sbjct: 221 LRTPLNPIIGWTQMLKR---GSVAADKQVEVLEIIERNAKLQNQLIQDLLDVARIEQGKF 277 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 + L +V+ + ++ A++ + + ++ L V D M+QV+ NLL+NA Sbjct: 278 SHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAERLPEVMVDPTRMQQVVWNLLTNA 337 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +KFT GG V + + + + + D+G GI+ IP + F Q A + G+G Sbjct: 338 IKFTPSGGWVQLHL-VEAADCLCLVVSDSGTGISPAFIPHLFERFRQAGDAGTRRQGGLG 396 Query: 440 LGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 LGL I + I+ HGG+ +S +G LP Sbjct: 397 LGLFIVRYIVELHGGRVWAKSDGQGKGAVFTVELPL 432 >gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 416 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 17/279 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ ++E LI ++ K E +R F+A++SHELRTPL Sbjct: 151 RSVRNCKIMRVTLKSEVRYLILLRDITKEKEVEAMRR---------DFVANVSHELRTPL 201 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 +I G++E + + + + ET ++ I + LIN++LDL ++E+G S+ Sbjct: 202 TSIHGYAETLAEDDL--EDKETVYRFLSIIENESARMTRLINDLLDLEKLESGEASFSKE 259 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT- 383 + L ++V + +++ A EKN+ I +D + V D + Q++LNL+ NAVK+T Sbjct: 260 DVELGEVVNYVMRIVEPLASEKNVSINVDVDEGI-FVEGDFDRLVQLLLNLVDNAVKYTF 318 Query: 384 -AIGG--RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + + + I ++D G GI E + + F + A G GL Sbjct: 319 AKEHGPKEIWLRA-YAQNNSAMIEVEDTGVGIPEDSLKHIFERFYRVDKARSRKMGGTGL 377 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GL I + I+ HGG + S+ G + LP +V Sbjct: 378 GLAITRFIVEKHGGTISLESEYGTGTILKVKLPLKKVFE 416 >gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] Length = 896 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAKKNVEFMIEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTHLSDDMQSISNDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731 >gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS] gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS] Length = 681 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 24/270 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + A+ + + AE N KS FLA+MSHELRTPLNA+LG++++ + + Sbjct: 313 EDITERKQAEVQLQKALQTAETANHTKSVFLANMSHELRTPLNAVLGYTQIFQQDD---T 369 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ +E I IHR+G++LL LIN+ILD+S++EAG+ E + L ++ + + Q+R Sbjct: 370 LNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEFYPKDMKLSQFLQGIVQLFQMR 429 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 Q+K IE K +L + ADEK +RQ+ +NLLSNA+KFT G V TV + Sbjct: 430 TQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAIKFTDK-GSVTFTVKTEQAKIK 488 Query: 400 -----------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + I+D G GIA E+ + F Q + G GLGL Sbjct: 489 NEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFLPFQQADKNHYNKPMGTGLGL 548 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I ++++ G + S L +G Sbjct: 549 SITKNLVDMMDGSIHVESLLGKGSIFWVEF 578 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 9/248 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ E K F++ +SHELRTPL +I G ++ + ++E K + S Sbjct: 1114 ERKQIE---RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSA-DSEQGKRLLEIATDS 1169 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ RIE+GR ++ + L D++ + ++Q A + +++ Sbjct: 1170 TERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVSSPS- 1228 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 +W D + Q + NLLSNA+KF+ V + V G +++KDNG GI ++ Sbjct: 1229 -IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQHYGDELLLTVKDNGRGIPADKL 1286 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 ++ F Q + G GLGL I QSI+ HGG+ S L EG LP + Sbjct: 1287 DSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVLGEGSNFYFTLPILPI 1346 Query: 478 LN--FIPE 483 +P+ Sbjct: 1347 SQNSELPD 1354 >gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 473 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 78/315 (24%), Positives = 151/315 (47%), Gaps = 18/315 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 V+ F V +AL ++G + + T + + + +++ + Sbjct: 174 RLLVYSVFLAVAIAL----------FSYFISGFVTKPIKDITDVIREMGRGHLRQKVEVS 223 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++I ++S +R E + A+S F+A+ SHEL+TPL++I ++ + + Sbjct: 224 GSKEIIELGNAFNAMS----QRVESLDKARSEFVANASHELKTPLSSIKVLAQSLVQDP- 278 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + + YKE++ DI + N+IN++L L +++ + +++ + + L ++ E + +L Sbjct: 279 -NADIKVYKEFMYDIDSEIDRMNNVINDLLTLVQLDKDKPDITYTDVDLERLINEVLKVL 337 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A KNI++ + + + S+ D ++Q+++N++ NA+K+T GG+V V Sbjct: 338 RPLAAAKNIKLNYRCEEGV-SIRGDAPKLKQMLINIIDNALKYTPEGGKVDV-CLRKKDG 395 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + DNG GI ++P + F + A A G GLGL IAQ I H G + Sbjct: 396 EALIEVVDNGMGIPRADLPYIFDRFYRVDKARSRATGGTGLGLSIAQKIAYLHKGTINVE 455 Query: 460 SKLREGVEVIAILPN 474 S EG LP Sbjct: 456 SSEGEGTRFSIKLPL 470 >gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora] Length = 1333 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 19/277 (6%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+D LE + L++E A+E + KS+FLA+MSHE+RTP+ ++G +E++ + Sbjct: 700 ERDIEAQVLEKRQLLANEA--AAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVGL 757 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + +E +I RS LL +IN+ILD S+IE+GR ++ E SL +++E ML Sbjct: 758 ----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKML 813 Query: 340 QLRAQEKNIEIFQKIDPSLS---SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 A+ K + +I ++ V D +RQV+ NL N +KF G V + V Sbjct: 814 SFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQNGIKFCHE-GHVKLNVFVE 872 Query: 397 SGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 I +K D G GI E + + F QG + G GLGL I+++++ Sbjct: 873 QETNDTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELM 932 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G+ + SK EG +P + P+ + +T Sbjct: 933 NGRMALASKRGEGTTATFWIPFKK-----PQKANSAT 964 >gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase [Eubacterium eligens ATCC 27750] gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase [Eubacterium eligens ATCC 27750] Length = 854 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 140/252 (55%), Gaps = 9/252 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + ++ AE NLAKS+FLA+MSH++RTP+NAI+GFS+++ P + Sbjct: 448 TYEQQIRGHMEDALHTAEAANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP---D 504 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+Y I S QHLLNLIN++LD+S+IE+G L+ S +++ DIV+E +++ +A++ Sbjct: 505 KVKKYAEKIVISSQHLLNLINDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQ 564 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + D + D+ + Q++LN+LSNAVK+T G + + + G + Sbjct: 565 KKQTLIISSDNVEYGWIKTDKLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFA 624 Query: 405 -----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I DNG G+++G I + F + + QG GLG+PI ++++ GG ++ Sbjct: 625 KYKFKISDNGIGMSDGYIKEIFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVK 684 Query: 460 SKLREGVEVIAI 471 SK EG Sbjct: 685 SKKGEGSTFEVT 696 >gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 108/478 (22%), Positives = 189/478 (39%), Gaps = 42/478 (8%) Query: 8 KEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT 67 V T P F E+ + P+ L LL + F Sbjct: 267 VAGKVARTGRATLLRDVSRDPDYRAFAPEVRAELAAPIGADPPLAVL--LLDSPRSVAFG 324 Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 ++ + + +L LAV +L + LL +G + + Sbjct: 325 ESEVAFVDALCHLAVNPLRRALHYQ----------------QLLETSAHLGQVFASMPNG 368 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 + + A L+I P A+ F+ + + L + Sbjct: 369 LVLMDQQGRVLRHNPAWLMIWGLT--------PDAMRDPFYIPLDLVPLLLPRMRDPLAL 420 Query: 188 SL--AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + A + + + +L +D + +SD TR+R E Sbjct: 421 TELCAEGQRSPTEVQSLLVRLNNPHQEVMLLSAPTRDSFGSLTGRLWIVSDVTRER--EA 478 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS FL+ +SHELRTPL +I+G++E++ P +E++ ++ HL ++ Sbjct: 479 DRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTPG---EQREFVKTVYNEANHLYQIV 535 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++L ++R+EAG L A+SL I+ + L + K+ + I P L V+AD Sbjct: 536 EDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTML-IDIPPYLPPVYADR 594 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEI 417 +RQV++NL++NAVK++ GG + +TV + + ++I D G GIA ++ Sbjct: 595 DKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPEDL 654 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 P + F + G GLGL IA++++ HGG+ SKL G LP Sbjct: 655 PRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLPVA 712 >gi|121727650|ref|ZP_01680753.1| sensor histidine kinase [Vibrio cholerae V52] gi|153828559|ref|ZP_01981226.1| sensor histidine kinase [Vibrio cholerae 623-39] gi|229523849|ref|ZP_04413254.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426] gi|254285229|ref|ZP_04960194.1| sensor histidine kinase [Vibrio cholerae AM-19226] gi|297579350|ref|ZP_06941278.1| sensor histidine kinase [Vibrio cholerae RC385] gi|121630037|gb|EAX62444.1| sensor histidine kinase [Vibrio cholerae V52] gi|148875954|gb|EDL74089.1| sensor histidine kinase [Vibrio cholerae 623-39] gi|150424501|gb|EDN16437.1| sensor histidine kinase [Vibrio cholerae AM-19226] gi|229337430|gb|EEO02447.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426] gi|297536944|gb|EFH75777.1| sensor histidine kinase [Vibrio cholerae RC385] Length = 736 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586] gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586] Length = 681 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 269 KSQDEIRHLIDTFNQKTINLEVEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 328 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H++ L+NEILD S+IE G++EL S+ L I+ Sbjct: 329 KDELTA----KQRQHLTSLYESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSI 384 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 385 KSIYSSLCFEKGLKFHLNSEITDTRWYYGDKARLRQIIFNLLSNAVKFTER-GFVTIGLA 443 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G I ++D+G GIA+ + + F Q G GLGL I + I A Sbjct: 444 EEATQEGHYLIIKVQDSGIGIAKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAAL 503 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ++S++ G + ++ ++ + K Y Sbjct: 504 MNGTVSVQSEVGRGTCFEVR--VKLAITEPIKEEYKPIKAKTY 544 >gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 896 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN++ + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 1168 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 144/313 (46%), Gaps = 26/313 (8%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + LA + S+F ++ + A L+ Sbjct: 750 PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 791 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE+ + AK+RFLA++ HE+RTP+ +LG SE++ + P + Y I + Sbjct: 792 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 847 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356 G+HLL+LIN+ LDL+RIE+GR EL +L ++++ ++ A +K + P Sbjct: 848 GEHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLP 907 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415 D +RQ++LNLLSNAVKFT+ G + + R + ++D GPGI++ Sbjct: 908 PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 966 Query: 416 EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q A +A G GLGL I + + G+ + S+L G LP Sbjct: 967 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026 Query: 475 TRVLNFIPEDNHE 487 V++ E E Sbjct: 1027 PLVVDANAESEGE 1039 >gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] Length = 456 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 136/295 (46%), Gaps = 6/295 (2%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 I+S+ + I++A + + K + S + + E+ K++ Sbjct: 166 ILSVFLTIITIAFLSRVITIPLIRMKQATEKLSKGDFSVRLQVKGGDELAELGKAIQTLA 225 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R E ++ FLAS+SHELRTPL + G++++ + E Y+ I+ Sbjct: 226 RD-LEYLKKERNEFLASISHELRTPLTYVKGYADIARR---PNMEEEERNRYLSIIYEEA 281 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +H+ L+ ++ +L++++ +++ + +L +++ + Q K + + + + ++ Sbjct: 282 EHMQKLVKDLFELAKMDQHSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQCEKNI 341 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +V D+K QV++NLL NA+K+ G V + I + D G GI E ++P Sbjct: 342 -TVHIDQKRFEQVMINLLDNALKYADQGSTVSIDARAEKDNIVMI-VSDEGRGIPEEDLP 399 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + + G GLGL IA+ I+ HGG S+ +G +I LP Sbjct: 400 HIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454 >gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1032 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 149/314 (47%), Gaps = 8/314 (2%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + +V + M ++L +L + ++ + + + + + E + Sbjct: 314 ARIWTIGLVAFSAFATYMLGYLLVKNLRMAHESISAYNQTLERQVEEGVAQANKSRMETE 373 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +L +L + + E ++A KS FLA+MSHE+RTP+N ++G + +++ + Sbjct: 374 NLNRDLRLQTERASEMAEKAILAERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTEL--- 430 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NET +EY+ + S + LL LIN+ILDLS+IEAG+ + + + ++D+ + + Sbjct: 431 -NETQQEYVETMLNSTESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASN 489 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSG 398 AQ K +E+ D ++QV+ NLLSNA+KFT G R+ + G Sbjct: 490 AQAKGVELVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDG 549 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GIA + T+ SF Q + G GLGL I+Q ++ GG+ + Sbjct: 550 ARIRFEVVDTGIGIAPEVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQV 609 Query: 459 RSKLREGVEVIAIL 472 S+L G L Sbjct: 610 ESELGVGTTFTFAL 623 >gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] Length = 798 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 16/270 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +N L D+ E K R++AEE + KS FLA+MSHE+RTPL Sbjct: 545 RNTQSTNPDRLEMICVNYDITELKETQKQ-----REKAEELDRLKSAFLANMSHEIRTPL 599 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFS ++ + E K+++ I ++ + LL LI+++LDL++IE+G EL Sbjct: 600 NAIVGFSTLLVDT----DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLV 655 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L ++ +E ++ ++++ + + D + D+ + Q+I N ++NA+K T+ Sbjct: 656 EVDLRELCKELVVSMRIKVPA-EVALCVVPDLPSYIMRCDKVRLTQIISNFINNAIKHTS 714 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G + + S+ D G G++ V F +G S +QG GLGL I Sbjct: 715 K-GTILLGYEIRWD-EIEFSVTDTGDGMSPEVQRHVFDRFYKG----NSFKQGTGLGLSI 768 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +SI+ GG+ + S++ +G LP Sbjct: 769 CKSIIEQVGGKIGVESEIGKGSRFWFTLPR 798 >gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] Length = 806 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 12/270 (4%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A + + AE +KS FLA+MSHE+RTP+NAILG ++++ ++ E + Sbjct: 424 AIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLKNTSL----PEELRAV 479 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + + SGQ LL +IN+ILD S+IE+ + +L +++ SL +++ L EK I Sbjct: 480 LKNASYSGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVSEKRIGF 539 Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIK 406 D S W D ++Q++LNL SNAVKFT G V + + Y+ + Sbjct: 540 TVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDK-GSVKINASSKIYEGKEAIYLEVV 598 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G G+++ + F Q + G GLG+ I S++ GG+ I+SK G Sbjct: 599 DSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSKQGLGT 658 Query: 467 EVIAILPNTR---VLNFIPEDNHESTQYKC 493 V LP + + + P+ + ++ K Sbjct: 659 TVTIKLPLPKANNIADKAPKKSFKAPNLKG 688 >gi|323699593|ref|ZP_08111505.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1165 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 18/258 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D + E A+ TR+ AE N AKS FLA+MSHE+RTP+NAI+G +E+ + Sbjct: 640 DDVTENRKAQEDLLRTREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTEITLQTDL--- 696 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++Y+ + S QHLL++IN+ILDLS+IEA + EL L VR I L+++ Sbjct: 697 -TDDQRDYLKTVKDSAQHLLSIINDILDLSKIEARKLELDHVDFDLPFHVRTTIKGLEVQ 755 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A++K +++ +ID + V D +RQV++NL NA+KFT G + + VG G Sbjct: 756 ARQKGLDMVLEIDEAAPNCVKGDPLSLRQVLVNLAGNAIKFTHR-GTIAIRVGPGQGPAP 814 Query: 400 ------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 G +++D G GI + ++ SF Q A G GLGL I + +++ G Sbjct: 815 DEARTVGVAFAVEDTGIGIPREFLDSIFQSFSQ----TTRAFGGTGLGLAICKQLISLMG 870 Query: 454 GQFLIRSKLREGVEVIAI 471 G ++ S + +G Sbjct: 871 GDIVVESTVGKGSTFSFT 888 >gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] Length = 1516 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 120/253 (47%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A + R AEE N KS FLA+MSHE+RTPLN +LG ++++ ++ Sbjct: 1118 ITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLNGVLGMLQLLQSTSLDV--- 1174 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KEY S L L+++ILDLSR+EAG+ + L + V + + +A Sbjct: 1175 -EQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVPFDLSETVNVVNELFKTQAI 1233 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 E I + ID + + D ++QV+ NL+ NA+KFT G++ V+ Sbjct: 1234 ESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTHA-GKIAVSSHLLPSSDPKR 1292 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 SI D G GI +I + T F Q S QG GLGL I + ++ GG I Sbjct: 1293 ISLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAGLGLSICKHLVTLMGGNISI 1352 Query: 459 RSKLREGVEVIAI 471 S L +G V Sbjct: 1353 SSVLGQGTTVNFS 1365 >gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1314 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 12/258 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + + AE + AKSRFLA+MSHE+RTP+NAILG S + + Sbjct: 562 ITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQA----KE 617 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ I+ SG L+ L+N+ILDLS+IEA R +L L +++++ + + Sbjct: 618 ARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVLPAMR 677 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT------VGWTS 397 K +E+ I ++ D + QV+ NLLSNA+KFT G V +T V T Sbjct: 678 NKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHE-GEVRITLTAEPYVQLTD 736 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD+G GI P + SF Q + G GLGL I + +M G+ Sbjct: 737 HYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHGKIT 796 Query: 458 IRSKLREGVEVIAILPNT 475 ++S L +G LP Sbjct: 797 LQSSLGQGSTFTCRLPLQ 814 >gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] Length = 772 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 158/277 (57%), Gaps = 2/277 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + + + + + AEL +A + ++RAE N AKS FLA+M Sbjct: 495 QVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANM 554 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFSE+++ + GPL +E Y EY DI SG+HLLN+IN+ILD+S+IEA Sbjct: 555 SHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEA 614 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ I L ++ E + + A+ KNI + Q+I L +++AD + M+QV+LNLL Sbjct: 615 GHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQVLLNLL 673 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNAVKFT GGR+ + ++I D+G GI +G + + F Q ++ Sbjct: 674 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKG 732 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++S+ HGG I S G + +P Sbjct: 733 GSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 769 >gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 1140 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 165/353 (46%), Gaps = 11/353 (3%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + A LL+ ++ L Y L+ P AL + + + L + Sbjct: 568 LVHFAALLMVVAAITGVLLSLIYTNSLTPLPATNALLSAML---WKVFFILLIIAGVVAW 624 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + + + I E + +++AE N AKSR+L +SH Sbjct: 625 LFVLAHESRLVAQEESQRQNRLLQEEITAHEETDRKLQQAKEKAEAANSAKSRYLTGISH 684 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELR+PLN+ILG+++++E +E + + I SG+HL +LI +LD+S+IE+GR Sbjct: 685 ELRSPLNSILGYAQLLEH---DEEISENKRYQLSVIRNSGEHLSDLIEGLLDISKIESGR 741 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++ + + ++ + + M +L+A+EK + + L+ V DEK +RQ+++NLLS Sbjct: 742 LDIHRDQVRISALLDQLVYMFRLQAEEKGLRFEYQCHSVLAEYVTTDEKRLRQILINLLS 801 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT GG V +V + + SIKD G GI E E+ + F + G Sbjct: 802 NAVKFTERGG-VSFSVRYR-SQVAEFSIKDTGVGIPEDELERIFRPFERVRTPGSPQVSG 859 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GLGL I + ++ GG + + G + ++V+ P S+Q Sbjct: 860 TGLGLTITRLLVDIMGGDLEVVNNPEGGCTFTVWMMLSQVV--TPVSVQPSSQ 910 >gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 642 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 141/276 (51%), Gaps = 14/276 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI ++ K L E ++ A N KS F+A MSHE+RTP+N ++G ++++ + Sbjct: 241 LIKDITEQKKLLIE-KETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDLLLDTPL---- 295 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E KEY+ I +SG+ LL +IN+ILD S++E+G EL+E +L + E L +A Sbjct: 296 DEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAETFDTLMPKA 355 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ- 401 EKN+E I P + + D +RQ++LNL+ NA+KFT G + V++ G Sbjct: 356 MEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPR-GSIGVSIDKAEAEGAN 414 Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++KD G G+ E ++P + F Q + E G GLGL I + ++ GQ Sbjct: 415 VRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQLMDGQIYC 474 Query: 459 RSKLREGVEVIA-ILPNTRVLNFIPEDNHESTQYKC 493 G IL +L IP HES K Sbjct: 475 EPNPGGGTIFRFHILIQAELLTSIP--VHESITEKA 508 >gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1484 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + ++ L AL S + LP V+ S +H+ + Sbjct: 839 LAINSGLGSALPASVVI---LPILYEDQVLGVIELASFSRFSEVHLAFVDQFVNTIGVSI 895 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + E EL+ + + +E + KS FLA+MSH Sbjct: 896 NTIIANARTESLLSESQRLTTELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSH 955 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L + ++ G L+ + + + IHRSG LL LIN+ILDLS+IEAGR Sbjct: 956 ELRTPLNSLLILARLLADNPEGRLSGQEVQ-FAATIHRSGSDLLQLINDILDLSKIEAGR 1014 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++ + L+ I+ + A ++ + + + +++DE+ ++Q++ NLLS Sbjct: 1015 MDVRPKKLPLVKILDYVNATFRPLAVDRRLSFEIAVGEDVPREMFSDEQRLQQILRNLLS 1074 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG------------QYISIKDNGPGIAEGEIPTVLTSFG 425 NA+KFT+ GG V + V T G ++ D G GI ++P + +F Sbjct: 1075 NALKFTSSGG-VTLRVERTPGAEFEEEALRSADAVIAFAVTDTGIGIPPEKLPVIFEAFQ 1133 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPE 483 Q G GLGL I++ I GG+ + S+L G +P + V Sbjct: 1134 QSDGTTSRKYGGTGLGLSISREIAGMLGGRIVAESELGVGSRFTLYVPVHYSGVAPVPDP 1193 Query: 484 DNHEST 489 + +T Sbjct: 1194 SDPRAT 1199 >gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 592 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 10/276 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 Y + + +V + D VA +R E ++ F++++SHEL Sbjct: 327 IYPVERMIRVHVTPIK----NDKTTERGAVAVLRDVTELRRLE---QIRTEFVSNVSHEL 379 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPL +I G+ E + E + ++ I L LI ++L+LS++E+ Sbjct: 380 RTPLTSIKGYVETLLDER--DCEPGVRERFLQVIKDETDRLERLITDLLNLSQLESASDS 437 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 + ++L ++ + + +A K I++ + ++ + + ++ +NL+ N + Sbjct: 438 FDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDNGI 497 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 K+T+ GG+V + V + + I D G GI E ++P + F + G GL Sbjct: 498 KYTSEGGQVKIKV-YEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVDKTRSRKLGGTGL 556 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GL I + I+ H G + SK+ EG + I LP + Sbjct: 557 GLSIVKHILERHNGGIEVESKVEEGTKFIFWLPKPK 592 >gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 966 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 13/258 (5%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ETR A + KSRFLA MSHE+RTP++ +LG E++ + P K+Y I Sbjct: 286 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTP----QQKDYTQTI 341 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +RS +HLL +INEILDLS++EAG L L D + + +L ++A++K +E+ + Sbjct: 342 YRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILL 401 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409 +P+L + D ++QV++NL++NA+KFT G + + V Y +I+D G Sbjct: 402 EPNLPRYLKGDGMRLQQVLINLVNNAIKFT-KSGHIIIRVTPRVISQDHINIYFAIEDTG 460 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI++ P + F S A G GLGL I Q ++ GG+ ++S+ EG Sbjct: 461 MGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEEEGSIFW 520 Query: 470 A---ILPNTRVLNFIPED 484 LP+ P++ Sbjct: 521 FNATFLPSELSETSAPKE 538 >gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC 30864] Length = 1474 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 12/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + E K ++ N AKSRFLA+MSHE+RTPLN ILG ++++ ++ Sbjct: 616 LTDQRRVNAAESEALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSLNN--- 671 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I S Q LL +IN+ILD S+IEAG+ + + + I + +L A Sbjct: 672 -EQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAA 730 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 KN+ + IDP L V D +Q+++NL+SN +KFT G V + Sbjct: 731 TKNLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFT-TSGSVSLRCLLDSEVDDDH 789 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + F Q +I + G GLGL I +S++ GG + Sbjct: 790 LLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGV 849 Query: 459 RSKLREGVEVIAILPNTRVLNF 480 S EG + + Sbjct: 850 DSTRGEGSRFWFTIKFRKPTET 871 >gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] Length = 911 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 162/350 (46%), Gaps = 27/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL L ++ L + L V P+ ++T + LD + G L Sbjct: 177 VFVATLMLLFCLCLAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I +LE+ D +KRA+E Sbjct: 231 GELNILKNGINAMAMSLTAYHEEMQHNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN +LGF+ + + T ++Y+ I RS +LL++IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRT----TQRDYMQTIERSANNLLSIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E +++L A EK +E+ D S+ V D Sbjct: 347 DVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNVIGDA 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVL 421 ++Q+++NL+ NA+KFT G + + VG S I ++D+G GI+E + + Sbjct: 407 LRLQQILINLIGNAIKFTEK-GYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQTQLF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG+ S+ +G + Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFMIR 515 >gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae] gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4] Length = 1268 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++ + +++AE N AKS FLA+MSHE+RTP+N +LG +++ T+ ++ +YI Sbjct: 520 EAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + + + LL L+N+ILD S+IEAG+ EL SL D++++ ++ A++K +E+ Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVL 635 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407 + + + D ++QV++NL+ NA+KFT G + + SIKD Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q +I G GLGL I++ ++ GG+ + S+ G Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755 Query: 468 VIA 470 Sbjct: 756 FSF 758 >gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 820 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 100/259 (38%), Positives = 148/259 (57%), Gaps = 14/259 (5%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +L+ +K+L+D ++ A+ N AKS FLA+MSHELRTPLN ILG+++++ + + Sbjct: 341 TQLKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGR---SKVLPD 397 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + IH+ G HLL LIN+ILDLS+IEA + EL+ A L ++ + + +R Q+ Sbjct: 398 KERQGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQ 457 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SG 398 K IE + D L + + ADEK +RQV++NLL NA+KFT G V + V T Sbjct: 458 KGIEFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDR-GSVALRVQRTGLEESDPR 516 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 SI D G GIA +I + +F Q K +G GLGL I+Q ++ GGQ + Sbjct: 517 TKLRFSIVDTGVGIASADINKLFQTFEQV-GEQKRKVEGTGLGLAISQQLVQLMGGQIQV 575 Query: 459 RSKLREGVEVIA--ILPNT 475 +S+L G E ILP Sbjct: 576 KSQLGVGSEFFFEIILPLA 594 >gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 522 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E + + + A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ Sbjct: 276 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 333 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + Sbjct: 334 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK- 390 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 N+ +V++D K + QVI N L+NA+KFT+ G + + S +S+ Sbjct: 391 NVRFVFDQGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 448 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+E + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 449 DTGMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 504 Query: 467 EVIAILPNTRVLNFIPE 483 LP + P+ Sbjct: 505 TFWFTLPLKEIKENEPK 521 >gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 733 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 4/239 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + AKS FLA+++HELRTPL ++G S + ++GPL N+ + Y+ IH SG+HLL L Sbjct: 356 AHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPL-NDKQRSYLKTIHDSGEHLLEL 414 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVW 362 IN+ILDLS++EAG+ LS S SL + R+ + + + +AQE +E+ + I Sbjct: 415 INDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLESLIPSEFERFC 474 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD++ +RQ++ NLLSNA+KFT GGRV + W ++D G GI+ + P + Sbjct: 475 ADQRRVRQILFNLLSNAIKFTPAGGRVTLR-SWVENGKALFQVEDTGIGISLSQQPLLFQ 533 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q + + +GVGLGL + + ++ H G+ + S G LP + Sbjct: 534 KFQQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVESTEGIGSIFTVELPAQSPTATL 592 >gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 482 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 109/435 (25%), Positives = 179/435 (41%), Gaps = 45/435 (10%) Query: 74 MWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWT 133 W+ + + + ++ L I I TLL ++ + Sbjct: 52 GWAYAIILLLILVTATSDRLRRQG-----------QLQWSSITIVTATTLLPILSCTAFG 100 Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 + L + + +S+ A + ++ L ++ A Sbjct: 101 FTDNNFVYLSVLGVFAAGIMVSSRAPYQATQAAILLYIILLLAADVIGQPRPTWFSAIGK 160 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEEN------ 246 L L + ++ D + E + L ET+ E Sbjct: 161 ILFLVILLLSAATLSWAAAYVVRGTINWAIDTAQKSERREQLLRETQATLERALLEWDLL 220 Query: 247 ----------------------LAKSRFLASMSHELRTPLNAILGFSEVIELETM---GP 281 +KS F+A+MSHELRTPLN I+GFS + Sbjct: 221 NEQLYRTTLELEEARAAAEAAYRSKSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDV 280 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + I +I RSGQHLL LIN+ILDL++IEAG+ EL+ + ++L ++ E I Q Sbjct: 281 KIDEQVLQDIAEIRRSGQHLLGLINDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQA 340 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 ++ I++ ++ SL +V ADE +RQV+LNL+SNA KFT + G + V + + Sbjct: 341 LIGDRPIQLRREYHDSLPTVLADEVRIRQVLLNLVSNACKFTHM-GEIAVGARAETDQ-V 398 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GIA + + F Q A G GLGL I + ++ HGG+ + S+ Sbjct: 399 VLWVRDTGIGIAPADQERIFQQFEQVENADTRHHAGTGLGLSICRWLIELHGGRMWLESE 458 Query: 462 LREGVEVIAILPNTR 476 + +G LP TR Sbjct: 459 VGKGSIFFFSLPRTR 473 >gi|291519879|emb|CBK75100.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens 16/4] Length = 881 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 142/259 (54%), Gaps = 12/259 (4%) Query: 231 AKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A L++E R + A+ N AKS FL+++SHE+RTP+N I G +E+I E +E+ Sbjct: 341 ATDLTEENRLIQEAQSANAAKSNFLSNISHEIRTPINVISGMNELILREC----KDESII 396 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +Y +I + ++L +LIN++LD S+IE+G+ EL + ++ ++ + + AQ+K Sbjct: 397 KYAENIDVASRNLSSLINDVLDFSKIESGKIELISTDFNIGSLLNDGYNLFLALAQQKMQ 456 Query: 349 EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403 + DP+ SV DE ++Q++ NL+SNAVK+T G ++VTV I Sbjct: 457 SFALECDPNTPSVLSGDEVRLKQILTNLISNAVKYTPDRGAINVTVTSKELENETIMLII 516 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ DNG GI +IP + +F + + + QG GLGL I ++++ G + S Sbjct: 517 NVTDNGIGIRTEDIPNLFQNFQRFELTKNRSIQGSGLGLAITKNLVDLMHGTINVDSTYG 576 Query: 464 EGVEVIAILPNTRVLNFIP 482 +G LP +V++ P Sbjct: 577 KGSSFTVNLPF-KVMDHAP 594 >gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1295 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 137/256 (53%), Gaps = 10/256 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ ++A ++ AE N AKS FLA+MSHE+RTPLN ++G ++++ +G Sbjct: 767 LADVSSAKMASEQLRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLL----LGS 822 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + ++ + +S LL ++N+ILD S+IEAG+ + +L +V E + L L Sbjct: 823 TLSHRQRAHLQIVKQSSDALLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALAL 882 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 RA +K IE+ I + V D +RQV++NL+ NA+KFT+ G V V + ++G Sbjct: 883 RASDKGIELIGDIAADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQ-GEVIVRLECSAGNA 941 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G + +I D+G GI E ++ T+ +F Q +I G GLGL I+ + GG Sbjct: 942 DEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHI 1001 Query: 457 LIRSKLREGVEVIAIL 472 + S L +G L Sbjct: 1002 RVDSTLGQGSTFHFTL 1017 >gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] Length = 928 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 139/251 (55%), Gaps = 9/251 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E + ++ + A+ N AK+ FL+SMSH++RTP+NAI+G + + + P E Sbjct: 395 TEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMAVIAQANLQSP---E 451 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I+ S +HLLNLINE+LD+SRIE+G+ +L +SL +++ + + + + A E Sbjct: 452 KIQDCLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAAE 511 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GR 399 K++E+ D V D+ ++QV++NLLSNA+K+T GG V + V Sbjct: 512 KHLELQINADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKGKG 571 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + DNG G++ IP + F + + + QG GLG+ I Q+I++ G ++ Sbjct: 572 QYEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIEVK 631 Query: 460 SKLREGVEVIA 470 S L EG + I Sbjct: 632 SVLGEGSQFIV 642 >gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3] Length = 1044 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 13/284 (4%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + L K+ + + EK I + + + AE + AK+ FL Sbjct: 484 IASFIPLEWDGTKLVKALLASMDVSQEKKAEIESHK----ALKDAYRAAENASRAKTEFL 539 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 ++MSH++RTP+NAI+G + + + + E +G I +S +HLL LINE+LD++R Sbjct: 540 SNMSHDIRTPMNAIIGLTAIAGANI---ESQDRVVECLGKITKSSRHLLGLINEVLDMAR 596 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372 IE+GR L+E SL ++V + + + E ++ ++ +V D ++QV Sbjct: 597 IESGRMSLAEEDFSLPELVDNLLTLTKPAIDEHKHQLEVHVEHIEHEAVCGDSLRIQQVF 656 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 +NL+SNAVK+T GG + +T+ SI+DNG G+ + F + Sbjct: 657 VNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRA 716 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + QG GLG+ IA++I+ G + S +G ++ Sbjct: 717 DDHRTTKVQGTGLGMAIARNIVNLMNGNIQVESAPNKGTKITVT 760 >gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] Length = 1184 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 84/298 (28%), Positives = 143/298 (47%), Gaps = 6/298 (2%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL A+ ++ + + + KS Sbjct: 455 AHLETQQAELEQTNEQLAEQTQTLAEQRDAMDRKNVELNQAQLELEDRAEELQRSSKYKS 514 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L+ E K + I+ +G LLNLIN+ILD Sbjct: 515 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 573 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V M + A ++ + + ++ D + + Sbjct: 574 ISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAADRKLGFQVDVQEGSPTMLFTDRQRLE 633 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V ++V G G +++D+G GIA + ++ +F Q Sbjct: 634 QILKNLLSNAIKFTEQ-GDVSLSVSRAPGEGIAFTVRDSGIGIAPDQQESIFEAFRQADG 692 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPED 484 G GLGL I++ + A GG + S+ +G +LP R + P + Sbjct: 693 TTNRRYGGTGLGLSISRDLAALLGGYISVASEPGKGSIFTLVLPEQYVEREADAAPVE 750 >gi|77359030|ref|YP_338605.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873941|emb|CAI85162.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 905 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 10/268 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ L ++ + +K+++ N AKS+FLA+MSHE+RTPLNA++GFS + E Sbjct: 508 QQIALTRQVAERTYSLAQAKKQSDLANRAKSQFLANMSHEIRTPLNAVIGFSSLARKE-- 565 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + T +Y+ I+ S + LLNLIN+ILD+S+IE+ R L L +++ M Sbjct: 566 --DDANTLIDYLDKINSSSKSLLNLINDILDISKIESKRLVLERIPFDLTALIQRINTMF 623 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-- 396 + A K I + P + D + Q++LNL SNA+KFT G V + V Sbjct: 624 EQSAASKAIVWKINSNIPKDTWFVGDPMRLEQIMLNLCSNAIKFTNA-GSVTLNVDTQLI 682 Query: 397 --SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + I++ D G GI + + ++F Q + G GLGL IA+ + Sbjct: 683 APNKAQLTIAVIDTGIGIKATQHEKLFSAFTQADNSTSRQFGGTGLGLAIAKELSVLMNA 742 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482 + S+L +G L V P Sbjct: 743 NIALHSELDKGSTFTFTLEIETVKAQDP 770 >gi|84385826|ref|ZP_00988856.1| putative sensor histidine kinase [Vibrio splendidus 12B01] gi|84379142|gb|EAP95995.1| putative sensor histidine kinase [Vibrio splendidus 12B01] Length = 808 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 12/289 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + A + EL+ E +AE+ N AKS FLA+MSHELRTP+N +LG Sbjct: 249 ALLTFAFSFAIFIFRVFELKRNNLAYQEAADKAEKANEAKSLFLATMSHELRTPMNGVLG 308 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++I+ ++ ++ I SGQHL+ ++N+ILD S++E G+ EL S S+ Sbjct: 309 IAQIIKEDSQSADT----RQQAQIIIDSGQHLVTILNDILDFSKVEQGKMELEYSPFSVA 364 Query: 330 DIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG- 387 D+V L A++K + P+ + D RQ++ NL NAVKFT G Sbjct: 365 DVVTHLDKTLTPLAEDKGLAFTIKDHIPTHIQLIGDSARTRQILFNLAGNAVKFTESGKV 424 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + I + D G GIAE +I + T+F Q ++ G GLGL I + Sbjct: 425 EVEFLIAPPPPPSVNILVTDTGIGIAEDKIEHIFTAFEQAELSTTRKFGGTGLGLSIVKQ 484 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN------TRVLNFIPEDNHESTQ 490 ++ GG + S+L G LP +V++ P +++ Sbjct: 485 LVELMGGTITVTSRLNFGTRFAISLPLEMHELEEQVIDQTPTKTNKTLD 533 >gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1658 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 12/299 (4%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 ++ + + K + D I E ++A+ E ++ A+ N AKS FLA Sbjct: 1137 GSIRWIVVRGQAIRDVQGKGIRMIGTNTD-ITERKLAEIALQEAKEAADAANRAKSTFLA 1195 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELR+PLNAILGF++++ P + Y++ + IH SG+HLL LIN++LDLS+I Sbjct: 1196 NMSHELRSPLNAILGFAQLMSNSVTLP---QQYQDNLRIIHHSGEHLLTLINQVLDLSKI 1252 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAGR L+E+ +L ++ E M +L+ EK +++ + ++ DE +RQV++ Sbjct: 1253 EAGRITLNETTFNLHHLLGEVEDMFRLKVNEKGLQLRFNWAADVPATIQTDEIKLRQVLI 1312 Query: 374 NLLSNAVKFTAIGGRV-HVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+SNAVKFT+ G V +V T+ G+ Y IKD G GIA E+ ++ +F Q Sbjct: 1313 NLVSNAVKFTSAGSVVMNVAQQRTNDDGRMTLYFEIKDTGCGIAADELESIFEAFVQSQS 1372 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNH 486 ++S GLGLPI + + GG+ + S++ +G + +V + P+ Sbjct: 1373 GVQSQSG-TGLGLPITRKFIQLMGGEIRVESQVSQGTTFTFDIQAKETQVTSSTPQTTS 1430 >gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1] Length = 1252 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++ + +++AE N AKS FLA+MSHE+RTP+N +LG +++ T+ ++ +YI Sbjct: 504 EAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 559 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + + + LL L+N+ILD S+IEAG+ EL SL D++++ ++ A++K +E+ Sbjct: 560 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 619 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407 + + + D ++QV++NL+ NA+KFT G + + SIKD Sbjct: 620 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 679 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q +I G GLGL I++ ++ GG+ + S+ G Sbjct: 680 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 739 Query: 468 VIA 470 Sbjct: 740 FSF 742 >gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] Length = 529 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 11/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 AE E + + + A+E N KS FLA+MSHE+RTPLNAI+GFS ++ M + Sbjct: 282 AAEKERHQKNIELAK--AQESNKLKSMFLANMSHEIRTPLNAIVGFSSILAD--MQEEDM 337 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I+++ LL LIN+ILD S+IEAG +++ +I E + L+ Sbjct: 338 DERHFYVDIINKNSDLLLQLINDILDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKIP 397 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + D + +D K + QVI N L+NA+KFT+ G + + Y+S Sbjct: 398 DH-VCFSFNRDLPSVELNSDPKRLTQVISNFLTNAIKFTSD-GEIKLDY-LLEKDKIYVS 454 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+E + F + + +QG GLGL I++SI+ GG+ + S L + Sbjct: 455 VTDTGIGISEEACNNIFDRFVKL----NTHKQGTGLGLSISKSIIEKLGGKIGVYSTLGK 510 Query: 465 GVEVIAILPN 474 G LP Sbjct: 511 GSTFWFTLPL 520 >gi|2218094|gb|AAB71131.1| sensor protein RssA [endosymbiont of Riftia pachyptila] Length = 773 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 111/516 (21%), Positives = 196/516 (37%), Gaps = 34/516 (6%) Query: 4 SRKNKEKDVGLLISPTGDHLG---LEYPSKMDFDREIITLH-----VESLFRVSPI---- 51 ++ + E PSK F I + Sbjct: 117 NQGRPRFWLERDSRDQQWKPTIKKPELPSKALFQASIRREFGFVGVSQIRLNQRTNDPRR 176 Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 L L+ PI + I + A V N+ + E L Sbjct: 177 LMTLTLISPVFERAKPGGPIGAVAISIDVGGMAQAYRDTLWVTNNGAYLEERLKGDTRPL 236 Query: 112 VGQIAIGLC----WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML-------- 159 GL L L + ++ ++ + ++ L Sbjct: 237 AFADFQGLEEIFRQGSLALWKGDKQQVIWVPLFMTEESGPLWVGRSVDPSPLAEFRTSLS 296 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDI--SLAGMLATALSFFTYITYHLFKSNVKILSC 217 + + +++ L + ++ + +LA + L + +H + +I Sbjct: 297 LRVILIVLVALIIVLLSSRWIAQQIAHFSETLADGIGRVLKSDQPVAFHW-RGPREIEEL 355 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L E ++ EE N KS FLA++SHELRTPLN+IL S+++ E Sbjct: 356 GEKLTALAETHAHHTQAQREHARQLEESNRYKSEFLANVSHELRTPLNSILLLSKMLREE 415 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G E + + IH +G L LI+ ILDLSRIEAG+ L I + +V E + Sbjct: 416 --GDNLGEQQCKQLKVIHEAGSDLKALIDNILDLSRIEAGQAGLVLDQIDIRRMVEELLE 473 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++Q + + K + + + DP L +D++ +RQ++ N LSN++KFTA GG + + V Sbjct: 474 LVQPQFEAKGLYLKAEFDPQLPDGFLSDQEKVRQILKNFLSNSIKFTAEGGAI-LHVYRD 532 Query: 397 SGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 +++D+G GI + + + +F Q + G GLGL I++ + G Sbjct: 533 LDSACCPLCFALQDSGIGIPQEKHELIFEAFKQADGSTNRRFGGTGLGLSISRQLAQLLG 592 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G+ ++S+ ++G LP + E E Sbjct: 593 GEIRLQSQEQQGARFTLCLPLQPPADAAIEPPPEQP 628 >gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88] Length = 2345 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 25/319 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F +N ++ Q L E E +++ E + E+ Sbjct: 1772 VGISLANAFLYRNASKHSAANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVKLKEDAA 1831 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G SE+++ + + Y+ I LL LIN Sbjct: 1832 KAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADTLLTLIN 1887 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + + E + L+ +++ ++ + +D + V D Sbjct: 1888 DILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPNLLVLGD 1947 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V I+ + D G GI+ ++ + Sbjct: 1948 PVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGEQLVRLF 2007 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L VL+ Sbjct: 2008 RPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL----VLSK 2063 Query: 481 IPED-------NHESTQYK 492 P++ + +STQ K Sbjct: 2064 APKNAVVKTPWSQDSTQEK 2082 >gi|160936694|ref|ZP_02084061.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC BAA-613] gi|158440485|gb|EDP18230.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC BAA-613] Length = 819 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + E + +LE + AEE N AKS FL+ MSH++RTPLNA+LG ++ E Sbjct: 266 ETELRQMQQKLEAQAKELRSALETAEEANRAKSDFLSRMSHDIRTPLNAVLGMKDIAEAH 325 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 P K+ + I SGQHLL+LIN++LD+S+IE+G L E ++SL +++ + Sbjct: 326 LDDP---AKVKDCLRKIGLSGQHLLSLINDVLDMSKIESGEMVLREDSMSLPEVLENVVA 382 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++Q + EK ++ + +D MRQ+ +N+LSNA KFT + G V + V Sbjct: 383 IMQPQFGEKEQHFSIRLRSVVHEQFLSDALRMRQIFINILSNAYKFTPVNGTVSMDVCEK 442 Query: 397 S--GRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 SI D G G+ + + T+F + + +G GLG+ I + + Sbjct: 443 QAVDGTALFRFSITDTGIGMKPEYLAQIFTAFSRERDSRVDKTEGTGLGMAITKRFVDMM 502 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG + S+L +G LP Sbjct: 503 GGTIEVTSELGKGTCFRVELPLK 525 >gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium vinosum] Length = 742 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 10/235 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ AE + AKS+FLA+MSHE+RTP+NA++G S+++ + + ++Y+G Sbjct: 513 EIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPL----DAKQRDYLGK 568 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S + LL +IN+ILD S+IEAG+ +LS SL D++ + + A ++IE+ Sbjct: 569 IRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFD 628 Query: 354 ID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDN 408 + SL V D +RQV++NLLSNAVKFT G+V +++ ++D Sbjct: 629 LAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQ-GQVVLSIRQLDAGTASARLRFEVRDT 687 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 G GIA + + F Q + G GLGL I+Q ++ GG ++ S Sbjct: 688 GIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPG 742 >gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 388 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 12/266 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ C I L+ ++ R++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 117 MEIEDRDCMVITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ +E +++ + + + L LI +ILDLS+IEAG E S + + Sbjct: 177 FSELLAS----ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDIN 232 Query: 330 DIVRECIIMLQLRAQE--KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + ++R E ++I ++ ++ D + QV+ N ++NA+KFT G Sbjct: 233 QMMSDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQE-G 291 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + Y +KD G GI + ++P V F + K + G GLGL I Q+ Sbjct: 292 SITLGFRPYEEG-LYFYVKDTGTGIPQEKLPHVFERFVKL----KQEKNGTGLGLSICQT 346 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ GG+ + S+ G LP Sbjct: 347 IVRKLGGEIGVESEEGAGSTFWFTLP 372 >gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4] gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4] Length = 1151 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 13/351 (3%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + TL ++ L F + S A + + Sbjct: 575 ALWSYLQSGLSNYLLLMGVTLTFLGALLGLIYFHETLILEKS----AAAALLGPLRLAFL 630 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243 + + ++++ +T + + + Q I + + R+ AE Sbjct: 631 KVFAALVFASAVIAWWLVLTSESRRVAQEESNRQTGLLLREIELHRQTDAELQQARQVAE 690 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N AKSR++ +SHELRTPLN+ILG++++++ + P + I I RSG+HLL+ Sbjct: 691 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDVSIP---AARQPAIRVIRRSGEHLLS 747 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 LI LD++RIE+G+ + L + +++ + M +L+A+ K + ++ L V Sbjct: 748 LIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVR 807 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 AD+K + Q+++N+L NAVKFT GG V + I I+D GPGI + E+ + Sbjct: 808 ADQKRLSQILINILGNAVKFTRQGGVVFRLRYARE---LAVIEIEDTGPGILKEELDEIF 864 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F +GS A S G GLGL I++ + GG+ +RS + G L Sbjct: 865 EPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELSVRSVVGSGTVFQIRL 915 >gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10] Length = 508 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 148/324 (45%), Gaps = 8/324 (2%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 ++ + V S F + + AI +L + L + Sbjct: 184 AAVYLHTPVPAIQKVRTSVFSLFLISGGVAISLAIILVYIFSIRFTRPLKQINNAAKIIA 243 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + +D++ E ++ ++ +R EE F+A++SHELRTP+ +I Sbjct: 244 GGDFQKRLVVSSQDEIGQLAESFNNMVED-LQRLEELRRG---FIANVSHELRTPMTSIR 299 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GF E I G + E + Y+ + L L+N++LDL+R+E+G LS + Sbjct: 300 GFIEGILD---GTIPPEKQRGYLTIVRDETNRLNRLVNDLLDLARMESGELTLSMKPFDI 356 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +++R C+I L+ KN++I D V AD+ + +VI+NLL NAVKF+ G+ Sbjct: 357 NELIRICVIKLETLITSKNLQIEANFDVDSMMVLADKDSIERVIINLLHNAVKFSNENGK 416 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + V + +IS+KDNG GI + + F + + + G GLGL I ++I Sbjct: 417 IIVETAKNKEK-VFISVKDNGIGIDSDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNI 475 Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472 + H L+ S + +G + L Sbjct: 476 LTEHKQDILLESDVGKGTKFTFTL 499 >gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1499 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 15/279 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV----IELETMG 280 I+ L A+ ++ AE N KS+F+A++SHE+RTPL+ ILG +V + + Sbjct: 1034 ISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVALSRLNDTALP 1093 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 +NE Y+ I + LL++IN++LD SR+EAGR L + L V + + L Sbjct: 1094 AHDNE-QGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALAPLA 1152 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTS- 397 ++A+ K + + ID + + D +RQ+++NL NAVKFT G VHV V ++ Sbjct: 1153 VQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRRSAQ 1212 Query: 398 ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 G +++D GPGI ++P + SF Q + G GLGL I++ I+ G Sbjct: 1213 CPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAISRHIVRLQG 1272 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 G + S +G LP + P+ T + Sbjct: 1273 GDIGVNSTPGQGSRFWFTLPIDK---DAPQGAATPTDLR 1308 >gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] Length = 1232 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 7/252 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E + + ++RAE+ ++AK FLA+MSHE+RTP+NAI+GF+E++ + P+ Sbjct: 654 LSERKAMEQDLVAAKERAEQASIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPV-- 711 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +++ + +S + LL L+N+ILD +++E G EL SL + ++ + LQ++A Sbjct: 712 --QLKHMQTVRQSARSLLGLLNDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQAD 769 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + + V DE +RQV++NLL NA+KFT G V ++V + Sbjct: 770 KKGLGLHLDYVHTTPDQVLGDELRIRQVLVNLLGNAIKFTLT-GEVRLSVDVLGEG-VRM 827 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GIA I + T F Q ++ G GLG IA+ + GG+ + S Sbjct: 828 QVQDTGIGIAVERIEHIFTPFTQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEG 887 Query: 464 EGVEVIAILPNT 475 +G + LP Sbjct: 888 QGSCFVVWLPLE 899 >gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 982 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 9/283 (3%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + L I + + L + L ++ + ++ AE ++AKS F Sbjct: 553 ASGKLIGVLGIGHDITAKRRSELELDGHRQHLQELVDSQTADLMVAKEVAETASVAKSAF 612 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+NAI G ++ + P +E + I + +HLL +IN++LDLS Sbjct: 613 LANMSHEIRTPMNAITGMVHILRNMGVTPPQSEK----LDIIENASKHLLGIINDVLDLS 668 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +IEAG++ L + +S+ + ML + +EK + + + D ++ D ++Q + Sbjct: 669 KIEAGKFTLEDVPLSIRALFGNVASMLGPKVREKGLVLNIEADDVPRNLRGDPTRLQQAL 728 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGS 428 LN NA+KFT G + + I ++D G GIA +P + +F Q Sbjct: 729 LNFAGNALKFTER-GHITLRARILEETELSANLCIEVEDTGVGIAPEALPKLFGAFEQAD 787 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ G GLGL I + I GG + S G Sbjct: 788 NSMTRKYGGTGLGLAITKKIAEVMGGTAGVNSTPGGGSTFWFT 830 >gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1170 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 3/298 (1%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + L + + + + D+ L A+ + ++ + + KS FLA+M Sbjct: 440 QAELEQTNEQLAEQTEALARQRDQMDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANM 499 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+ L ++++ G L+ E + + I+ +G LL LIN+ILD+S++EA Sbjct: 500 SHELRTPLNSSLILAKLLADNPAGNLSEEQVQ-FARSIYSAGNDLLTLINDILDISKVEA 558 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ E+ L +V + +A EK + ++ L +++ D + + Q++ NL Sbjct: 559 GKLEVHPELTILARLVDGMKSLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNL 618 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 L+NA KFT G V + V G +++D G GIA + + +F Q Sbjct: 619 LANAFKFTEK-GSVTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRY 677 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G GLGL I++ + GGQ ++S G +LP + E + Sbjct: 678 GGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLPQSYSEPLAVEPTTAPQPSRA 735 >gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1340 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 17/333 (5%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P + AL +++ V + + + V+ + L Sbjct: 631 VQPYLGALGIASLL--DVPIFFGGRLAGVVCHERVGLPREWTREEVQFATSVGNLVALAY 688 Query: 227 ELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 E + A++ ++ AE N AKS FLA+MSHE+RTP+NAI+G ++++ + Sbjct: 689 EAKQRLEAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSETPL---- 744 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 NE +EY+ +G +LL+LIN++LDLS+IEAG +L L D+V+ ++ +RA Sbjct: 745 NEDQREYVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRA 804 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---- 398 EKN+E+ +I P + + + D +RQV+LNLL NA+KFT G V + V Sbjct: 805 SEKNLELAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDE-GEVVLRVERDPQADGP 863 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI ++ + F Q + G GLGL I++ ++ GG+ + Sbjct: 864 GTILFTVRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWV 923 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S+L G ++ P Q+ Sbjct: 924 DSELGRGSTFSFT--AKFAVHVQPASAVPPAQW 954 >gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1026 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 112/488 (22%), Positives = 184/488 (37%), Gaps = 33/488 (6%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV--ANIGTWFTQN 69 V + + R + V S + + A + + Sbjct: 302 VARALEHAR-----HDDGERAAARRVGINFVVSDRVPRSDEVVMATISWRAVLSDVALRA 356 Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW--TLLTLV 127 + L A K ++ I L+ + LV Sbjct: 357 S---LTVAPALFAIALLWIAIVKFDRRALRPANRRA--IRLIESEALNRTLIRTAPAGLV 411 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 E + + + L A P + Sbjct: 412 LLSFADGETIMRNDALLAYEQDASGEPLGKRLWRAYRDGAPPGNA-----------RTRV 460 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 + + A Y+ H+ ++ + + I + A+ E R+ AE N Sbjct: 461 TRELAVERAGYGTAYLDAHIVRTRYRGIDVLLCTLLDITTRKQAEEKLREAREAAEFANK 520 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS FLA+MSHE+RTPLNAI+G E++E M + +G I S LL +IN+ Sbjct: 521 AKSTFLATMSHEIRTPLNAIIGNLELMERAQMAAP----LRRRLGTIMSSSDALLRVIND 576 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEK 366 +LDLS+ E+ + L L +V E + + A K++ + +I P L++ D Sbjct: 577 VLDLSKAESNQMALESIPFDLRRVVNEVAAIFRPLADAKSLVLTCRIAPDLANGYVGDAT 636 Query: 367 GMRQVILNLLSNAVKFTAIGG-RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIPTVLTS 423 +RQ++ NL+SNA+KFT GG + V + +GR I++ D G GI E +PT+ Sbjct: 637 RLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRCVEIAVSDTGIGIPEDGLPTLFDV 696 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + Q +I G GLGLP+ + I+ GG + S+L EG +A LP + + Sbjct: 697 YVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALPLPEAPSGWRD 756 Query: 484 DNHESTQY 491 D E + Sbjct: 757 DAPEPGTF 764 >gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 441 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 149/328 (45%), Gaps = 8/328 (2%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +++ +++L A++ ++V ++ + A A + Sbjct: 115 SVANMVGESYILQTALWGLGLVILVTAGVGLLLFRRLTQRLRAMQDVVADFEAGAFGRRV 174 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ E L ET + + + + +A++SH+LR+P+ +I Sbjct: 175 DVTSND------EIGRLGTCFNRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASI 228 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 G+ E + ++ G L + + Y+ R+ + L L+NE+ +LS++E + E + A Sbjct: 229 QGYLETVHMKD-GDLPPQERQRYVKTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFP 287 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + ++V++ ++ + RA+E+ +++ + + V AD + + + NL+ NA+ +T GG Sbjct: 288 IAELVQDVVMQYEPRAEEQAVDLRADLPERHARVEADIGLVERALSNLIDNAIHYTPEGG 347 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V V + +++ D GPGI E ++P + F + + G GLGL IA++ Sbjct: 348 QVRVRLD-NEQGEVCVAVADTGPGIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKT 406 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNT 475 I+ HG + S + EG LP Sbjct: 407 ILELHGRTLEVESTVGEGTSFRFCLPVE 434 >gi|302551344|ref|ZP_07303686.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302468962|gb|EFL32055.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1359 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 17/325 (5%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 A V I +A A S + + ++ E EL+ + + +E Sbjct: 867 AFFDQFVNTIGVAINTIIANSRTESLLGESQRLARQLQERSDELQMQQGELQRSNAELEE 926 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN++L + ++ G L+++ + + IHRS Sbjct: 927 KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 985 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL LIN+ILDLS+IEAGR ++ + LI ++ + ++ + + Sbjct: 986 GSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAFEVAVGED 1045 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIK 406 + +++DE+ ++Q++ NLLSNA+KFTA G+V + V + S+ Sbjct: 1046 VPREMYSDEQRLQQILRNLLSNAIKFTAT-GKVELRVDRVRDTEHRFVRDADDVIAFSVS 1104 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA ++P + +F Q G GLGL I++ I GG+ + S+ +G Sbjct: 1105 DTGIGIAPEKLPVIFEAFAQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAESEPGKGS 1164 Query: 467 EVIAILPN----TRVLNFIPEDNHE 487 +P V P D E Sbjct: 1165 TFTLHVPVVSPGHTVPQPRPADRSE 1189 >gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 862 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 83/276 (30%), Positives = 139/276 (50%), Gaps = 14/276 (5%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + ++ + AE N K+ FLA+MSHE+RTP+NAILGF+E++E E + Sbjct: 353 EMRKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAE----ERDP 408 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++YI I+ SG LL +IN++LDLS++EA + L + ++ E + A++ Sbjct: 409 RRRKYIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEK 468 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR---- 399 K++ + +I + + D +RQ+++NL+ NA+KFT +GG R+ + S Sbjct: 469 KHLILDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSV 528 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D+GPGIA + + F QG +A G GLGL I++ + GG + Sbjct: 529 DLRIDVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLT 588 Query: 460 SKLREGVEVIAILP----NTRVLNFIPEDNHESTQY 491 S EG LP + ++ E+ Q+ Sbjct: 589 SSPGEGAIFSIELPNVAIVEKASLEKENEDTENVQF 624 >gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 807 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 674 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 732 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787 Query: 465 GVEVIAILP 473 G P Sbjct: 788 GSCFWFTYP 796 >gi|285018938|ref|YP_003376649.1| two component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283474156|emb|CBA16657.1| putative two component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1188 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 145/319 (45%), Gaps = 23/319 (7%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VVA+ + L G AL ++Y + + S Q +A + Sbjct: 747 VVAMRFHVLPPWWRSTWGLVGWALLALLIVWRLSYLYRRRLRRRNSWQ------LALHKQ 800 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + + Y Sbjct: 801 ---------EVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLATPL----DPKQRGY 847 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I +G HLL L+N+ LDL+RIEAGR EL + L ++ E M++ AQ + Sbjct: 848 TESIRGAGTHLLRLVNDALDLARIEAGRLELDQQPFDLGQLIAELAAMMEPMAQGHGLTF 907 Query: 351 FQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDN 408 P + D +RQ++LNLL+NA+KFT G V + V +G + D Sbjct: 908 VLDNAMPEQVTATGDATRVRQILLNLLNNAIKFTER-GSVQLRVAPLQEFQGVRFEVVDT 966 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 GPGI + + F Q + G GLGL I Q + GG+ ++S+L G Sbjct: 967 GPGINAEQQARLFQRFEQADGPRTAARYGGSGLGLAICQELAVAMGGRIDLQSRLGAGTR 1026 Query: 468 VIAILPNTRVLNFIPEDNH 486 + LP V + +P Sbjct: 1027 FVVDLPLPWVPSSLPRPTS 1045 >gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 809 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 560 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 615 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 616 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 675 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 676 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 733 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 734 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 789 Query: 465 GVEVIAILP 473 G P Sbjct: 790 GSCFWFTYP 798 >gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] Length = 569 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 16/280 (5%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++++ A++ ++ AEE + KS FLAS +HELRTPLN I+G Sbjct: 283 AEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIG 342 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F ++I + + +E++ + H+S HLLNLIN+ILD+++IEAG+ +L ++ L Sbjct: 343 FLKLILDGM--ADDAQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLELGSVELA 400 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + +AQ K++ K+ +L V+ + + + QV+ NL+SNA+KFT G Sbjct: 401 ELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIMVYGNYQRLLQVMFNLVSNAIKFTHE-G 459 Query: 388 RVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 + V +S+ D G G++ + + F Q + A G Sbjct: 460 SIVVNAEIVKKKIKYQDQEFPGLVKVSVTDTGIGVSLDQQAKLFEKFVQVDGSHTKAYGG 519 Query: 438 VGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476 GLGL I+Q ++ GGQ S G V +P + Sbjct: 520 TGLGLAISQKLVQAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559 >gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 1117 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 9/247 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ + ++ AE+ +AKS FLASMSHE+RTP+N +LG +++ + ++ K Sbjct: 586 ETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIVKATQL----DQQQKH 641 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +I S + LL +IN+ILD S+IEAG+ ++ +L ++ E + L+A++ N Sbjct: 642 HIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEVVESFALKAEQNNTT 701 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 + + S +D +RQ++ NL+ NAVKFT G + VT T +I Sbjct: 702 LILDATHITSSEFISDPNRLRQILSNLIGNAVKFT-QNGEILVTAKITHTLDATVLECAI 760 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI+ + P + SF Q + G GLGL I + + G+ + S +G Sbjct: 761 ADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNVSSTPNKG 820 Query: 466 VEVIAIL 472 + Sbjct: 821 STFSFFI 827 >gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] Length = 970 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 127/266 (47%), Gaps = 9/266 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E E + ++ AE N AK+ F+A+MSHE+RTPLN +LG + ++ + + Sbjct: 463 VTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDTPL----D 518 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + Y+G I R G LL+++++ILD S++EAGR +L ++ R +L+ +A Sbjct: 519 DRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILEPKAA 578 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400 EK + I D D +RQV+ NL+ NA+KFT G + + G Sbjct: 579 EKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDE-GWISIEATVVKGPDGPR 637 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G GI E + F Q ++ G GLGL I + I+ GG+ + S Sbjct: 638 LRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGVVS 697 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486 + +G +P+ + E Sbjct: 698 ETGKGSTFWFEIPHVEPSSSDQEAAQ 723 >gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] Length = 1824 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 145/272 (53%), Gaps = 18/272 (6%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L D+ + ++ + + + ++ AEE N AKS F+A++SHE+RTPL+ ++G S+ Sbjct: 1106 SSLRMAGTLRDMTSRKDMQRLIFE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSD 1163 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + +E ++Y+ I +S Q LL +IN+ILD S++E+ + ++ S+I+ Sbjct: 1164 LLLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETC 1219 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH- 390 + I ML + A ++I ++ P++ V+ D +RQV+LNLLSNA+KFT+ G + Sbjct: 1220 QAVIHMLSV-AANDEVDILLRVPPNVPKIVFGDAMRIRQVLLNLLSNAIKFTSRGHILTD 1278 Query: 391 VTVGW------TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 ++V + + I+I+D G GI + ++ F Q + G GLGL Sbjct: 1279 ISVDESVPTSNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGL 1338 Query: 443 PIAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473 I + ++ GG + S + +G I+P Sbjct: 1339 SITKRLIEEVMGGTIQVSSIVNQGSTFKCIIP 1370 >gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271] gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271] Length = 883 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 13/282 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + + + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIG-----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 T G + + S IS+KD G GIA+ + + +F Q A Sbjct: 617 TEKGFVSLHFDSIETANLSHEMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGAT 676 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 677 IRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ F+A++SHELRTPL +I+G+ + + + + +T + ++ I L NLIN++ Sbjct: 371 RNDFVANVSHELRTPLTSIIGYLDTLLESDI--EDQDTRERFLQIIKEETDRLSNLINDL 428 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L+LS+IE+ ++L IV++ + +L +A+++ +E+ +ID +L V+ + + Sbjct: 429 LNLSKIESQIFKLEADNFE--KIVKKVVNLLSQKAKKQKLELNLEIDNNLPLVYMVREQI 486 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QV++NL+ NA+K+TA GG+V V V + Y S++DNG GI + + + F + Sbjct: 487 KQVLINLIDNAIKYTAEGGKVEVKVKQEKDK-IYFSVQDNGMGIPQADQERIFERFYRVD 545 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A A G G+GL I ++I+ HG + ++S+ G E L Sbjct: 546 KARSRALGGTGIGLSIVRNIIKQHGSEIQLKSREGVGSEFYFYL 589 >gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 443 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 9/309 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ + + + +S + + L+ L+++ ++ + + +L Sbjct: 92 IAVELMKAGATDYLSKFRVSSETLAQVLRNAIRLYRAEMQTTIAYQQLRESHEQLVRKNQ 151 Query: 234 LSDET-------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + E + KS+FLA+MSHELRTP+NAI+GF++++ G L Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTG-Q 210 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I +G+HLL L+NE+LD S++E GR EL L ++ ++ ++ A+ K Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAK 270 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + +ID S + D ++Q+++NLLSNA+KFT G + + V G I +K Sbjct: 271 KLSLLVQIDLQNSLLVNDPVRIKQILINLLSNAIKFTDS-GSIWIDVKDLPGSWVEIKVK 329 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA + + +F Q +I G GLGL I S++ G+ + S+L G Sbjct: 330 DTGIGIAAKDFKYIFEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGS 389 Query: 467 EVIAILPNT 475 LP Sbjct: 390 IFTITLPRQ 398 >gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 623 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 11/269 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ ++ D+ + E +KRAEE N KS FLA+MSHE+RTPLN Sbjct: 364 RDYRPEEGVIDLACVNYDISELKRTEEEELREAKKRAEESNKLKSAFLANMSHEIRTPLN 423 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ E+ ET +EY I R+ LL +I+++LDL+RIE+GR ++ + Sbjct: 424 AIVGFSELLADESRH----ETRREYTDIILRNNTLLLQIISDVLDLARIESGRTDIERTQ 479 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 D+ RE L+L+ + +E+ + V KG+ QV+ N NA+KFT Sbjct: 480 FDARDLCREVADSLRLQ-RRPGVELRVEEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEK 538 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V + ++D G GIA + + F + + QG GLGL I Sbjct: 539 -GSVTIGFRRIP-GHIRFYVRDTGIGIAPEDRERIFERFVKLD----TFTQGTGLGLSIC 592 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 +SI GG + S EG +P Sbjct: 593 KSIAEQLGGSVGVDSVAGEGSCFRIDIPA 621 >gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 974 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 12/279 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++L AE E A+ ++T + AE + +KS FLA+MSHE+RTPL Sbjct: 423 RRWTQLDEQLLMTAAEIIAAAIERNRAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPL 482 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+G +E+ E + E + + S + LL+++N+ILDL+R+E+G+ L E Sbjct: 483 NAIIGLTELSLQEDLPEGVGENLRASL----SSAEALLDIVNDILDLARVESGKLHLEEV 538 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 SL + + +++ A+ K ++ + L + D +RQ+++NL+ NA+KFT Sbjct: 539 EFSLPRFLGGVMRVMRHEAERKGLDFSMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFT 598 Query: 384 AIGG-RVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 GG V V +SG +++D G GI E + +F Q +I Sbjct: 599 EEGGVNVAVECVSSSGGYIAGVQRVRFTVQDTGIGIPEHLHGIIFENFRQADGSITRKYG 658 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ ++ GG +RS+ +G LP Sbjct: 659 GTGLGLTISRQLVEMMGGSISLRSEAGKGSRFEVELPFK 697 >gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 968 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 142/254 (55%), Gaps = 9/254 (3%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E + AE N AKS FL++MSH++RTP+NAI+GF+ + + E Sbjct: 436 DRNMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKERV 492 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL DI+ + ++ + K Sbjct: 493 RDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDILHDLKTIISGQIHAKQ 552 Query: 348 IEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQ 401 +E++ +D + V+ D+ + QV+LNLLSNAVKFT GG V V + G Sbjct: 553 LELYMDAMDITNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQRPGTQKGSELY 612 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KDNG G+++ + + F + + S QG GLG+ I ++I+ GG ++++ Sbjct: 613 EIRVKDNGIGMSQEFVQKIFAPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTE 672 Query: 462 LREGVEVIAILPNT 475 +G E I LP Sbjct: 673 QGKGTEFIVRLPFR 686 >gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] Length = 763 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 10/316 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 I S + L +L + K + I ++A+ Sbjct: 322 IRSGKASNFDLRILLPQQQIRYINAIAKPVKDENGAVIRLYGAIIDITRRKIAEQELINA 381 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + AE+ AKS FL++MSHE+RTP+NA++GF+ ++ + EY+ + SG Sbjct: 382 KVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQN----NPAQEQLEYLNLLKFSG 437 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++LL LIN+ILD S+I+ G+ +L +++ + A++K +E+ +D S+ Sbjct: 438 ENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQAARDKGLELTLTVDQSI 497 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIA 413 S+ D + Q+++NL++N++KFT+ G V + V ++I I D G GIA Sbjct: 498 INSIVGDPVRLGQILINLITNSIKFTSS-GSVSIDVWKEHEDLEHITICFEIADTGIGIA 556 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E I + F Q S G GLGL I + ++ GG + SKL EG L Sbjct: 557 EDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQGGSLSVTSKLNEGSTFQFRLT 616 Query: 474 NTRVLNFIPEDNHEST 489 +P+ T Sbjct: 617 FQNGKQLLPDVPKTDT 632 >gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 985 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 8/269 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + E + +LE + + E + A + N AKS+FLA+MSHE+RTP+N Sbjct: 285 ALLNLIEDANLARNELLETNRKLEESVIRTQEMARAASKANEAKSQFLANMSHEVRTPMN 344 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G S+++ ++ P ++Y+ I SG++LL++IN+ILD S+IEA R +L Sbjct: 345 GVIGMSDLLLDTSLDP----EQRKYVETIISSGKNLLSIINDILDFSKIEANRLDLDVVD 400 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L++++ + +L L+AQ+K +E+ L + D+ +RQ+++NL+ NAVKFT Sbjct: 401 FDLLELLEDVCGILGLQAQQKGLELTLVTGSFLPRFLRGDQARIRQILVNLVGNAVKFTH 460 Query: 385 IGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V + Q + ++D G GI + V F Q + + G GLG Sbjct: 461 SGEVVVCAMAQEERDSQVTIRLLVRDTGIGIPREMMKAVFEPFIQADGSTRRKYGGTGLG 520 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470 L I+ + G ++ S EG Sbjct: 521 LAISNQLAKKMGSTIILESTNGEGSVFWF 549 >gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 568 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 16/286 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + ++++ A++ ++ AEE + KS FLAS +HELRTP Sbjct: 277 SRYWSPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTP 336 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN I+GF ++I + E +E++ + H+S HLLNLIN+ILD+++IEAG+ +L Sbjct: 337 LNGIIGFLKLILDGM--ADDAEEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEL 394 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381 A+ L ++ + +AQ K++E K+ +L V+ + + + QV+LNL+SNA+K Sbjct: 395 GAVELAELFQAVDNFTLPQAQRKHLEFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIK 454 Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 FT G + V +S+ D G G++ + + F Q + Sbjct: 455 FTHE-GSIVVNAEIVKKKIHHQNQEFPGHVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSH 513 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476 A G GLGL I+Q ++ GGQ S G V +P + Sbjct: 514 TKAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559 >gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 978 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 12/251 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + + R++A+E + KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 592 LITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLL----TATEN 647 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 KE+I I + Q LL L+++ILDLS+IEA E + + L + ++ ++ R Sbjct: 648 ETERKEFISIIETNNQLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL 707 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + + + + + V + + QV++NLL NA KFT G + G Y Sbjct: 708 -QTGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEK-GEIMFGYKIR-GEELYF 764 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462 +KD G GI+ + F + + QG GLGL I ++I+ G+ + S+ Sbjct: 765 YVKDTGIGISLENQKKIFERFTKV----NTFIQGTGLGLSICKNIVTKMKGRIGVESEGE 820 Query: 463 REGVEVIAILP 473 +G +P Sbjct: 821 GKGSTFWFTIP 831 >gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1168 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 26/311 (8%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + LA + S+F ++ + A L+ Sbjct: 750 PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 791 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE+ + AK+RFLA++ HE+RTP+ +LG SE++ + P + Y I + Sbjct: 792 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 847 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356 G+HLL+L+N+ LDL+RIE+GR EL + +L ++++ ++ A +K + P Sbjct: 848 GEHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLP 907 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415 D +RQ++LNLLSNAVKFT+ G + + R + ++D GPGI++ Sbjct: 908 PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 966 Query: 416 EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q A +A G GLGL I + + G+ + S+L G LP Sbjct: 967 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026 Query: 475 TRVLNFIPEDN 485 V++ E Sbjct: 1027 PMVVDASAEAE 1037 >gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 733 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 5/280 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +KD + +T AE NL KS FL +MSHEL TPL I+G S ++ Sbjct: 334 QVQEQKDIFECRVIERTQELQDTLMAAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQ 393 Query: 276 LETMGP--LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + L + K Y+ I +G LL LIN++L+ S++ AG+ L SL + Sbjct: 394 KCSAASNFLPPDKQKHYLQVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCN 453 Query: 334 ECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + +++ A+ K I + ++ +AD ++Q++L LL NA+KFT G + + Sbjct: 454 HVLEIIKTEAEIKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITL 513 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + W G ++D G GI +IP + F Q + K G+GLGL + + ++ Sbjct: 514 RL-WKEGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVEL 572 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 H G + S L +G LP + P+ + + + Sbjct: 573 HRGTIEVESCLDKGSIFTVRLPQQKPPKSQPQLSEHNPHF 612 >gi|229520292|ref|ZP_04409718.1| sensor histidine kinase [Vibrio cholerae TM 11079-80] gi|229342658|gb|EEO07650.1| sensor histidine kinase [Vibrio cholerae TM 11079-80] Length = 736 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1005 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 13/324 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKIL 215 L P+ + T H +++ L L + ++++K L Sbjct: 542 LMTRAAAGMGPL-ASELTHGRHGPHARHLAVPVRLDGRLGAVAVLLDKPTPFTRADIKQL 600 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E + ++ AE N AKS FLA+MSHELRTPLN +LG +++E Sbjct: 601 DLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE 660 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + NE + SG+ LL ++++ILDLSRIEAGR EL S + VR+ Sbjct: 661 AGDLDRDQNE----LVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQV 716 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-- 393 M A+ + + + + D VW D +RQ++ NLL NA+KFT G V V V Sbjct: 717 YDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHE-GTVGVEVCA 775 Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI + ++ F Q + G GLGL I + ++ Sbjct: 776 VRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHL 835 Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475 GG + S L EG V LP Sbjct: 836 MGGGLNVESALGEGTAVHVCLPFR 859 >gi|158334364|ref|YP_001515536.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158304605|gb|ABW26222.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 2817 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 16/302 (5%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA-------ELEVAKSL 234 + G+L + + + + L +E Sbjct: 2230 RWQFSSAPLGVLPDGRRIVISMAVDVTQRRQTEDELEQANQQLAEYSHTLEQRVEERTQA 2289 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +++A+ N AKS FLA+MSHELRTPLN ILG+++++ + ++ I I Sbjct: 2290 LQIAKEQADSANQAKSEFLANMSHELRTPLNGILGYAQILNR---STTLIDKERDGIKVI 2346 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H+ G HLL+LI++ILDL++IEA + EL L ++ + + +++AQ+K I+ Sbjct: 2347 HQCGSHLLSLIDDILDLAKIEARKLELVPVDTYLPAVLHSVVEICKIKAQQKGIDFVYAP 2406 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGP 410 V DEK +RQV++NLL NAVKFT G V + V S + D G Sbjct: 2407 KDLPIGVRVDEKCLRQVLINLLGNAVKFT-DNGTVTLNVEVLSTSNQEASLLFQVMDTGI 2465 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIAE ++ + +F Q A +G GLGL I+Q I+ G ++S++ G + Sbjct: 2466 GIAETDLSKLFDAFEQV-GARDRRAEGTGLGLAISQRIVQLMGHSIEVKSQVGIGSQFSF 2524 Query: 471 IL 472 L Sbjct: 2525 RL 2526 >gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 632 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 11/235 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + E E++ I + Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LI++ILDL++IE+G +L + +++ +++ E + +++ + N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPE 505 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++D + QVI N L+NA+K+T+ G + + G S+ D G G+++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F +G + +QG GLGL I ++I+ GG+ + S+L +G P Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614 >gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 436 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 2/249 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ ++A+ +++ E + KS F+ ++SHELRTPLN+I+GFS +++ L Sbjct: 184 ISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPLNSIIGFSHILKENNENNLTE 243 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y ++ SG+HLL LIN++LD+S+IE+G L ++ E + L A Sbjct: 244 NQLK-YCSNVEISGKHLLALINDVLDISKIESGEARFEPELFKLNLLIHEVVESLAPFAN 302 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K+IE+ + V AD ++Q++LNLL+N++KFT G++ +TVG IS Sbjct: 303 KKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPACGKIMLTVGVDEEN-INIS 361 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I DNG GIA+ + F Q + + +G GLGL IA+ + H GQ ++S+L Sbjct: 362 ISDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAKKYVEMHKGQIWVKSELGV 421 Query: 465 GVEVIAILP 473 G +P Sbjct: 422 GTTFNIKIP 430 >gi|89094752|ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92] gi|89081006|gb|EAR60243.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92] Length = 881 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 16/366 (4%) Query: 119 LCWTLLTLVE-PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 + W ++ L E P + I LI L + + + + Sbjct: 148 IGWVVIVLSENPTKERQFEILIKGVILALIGLLTTVFIASRFGQRITNPILGLTHVIEML 207 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-----DDLIAELEVAK 232 + + +L+ + + + L + +K + LE Sbjct: 208 QHGHLETRASLSSTGELRSLAQGINRLAQRVQESNQTLESRVDKATKRLRSTLVHLEKQN 267 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D+ RKRA NLAK FLA MSHELRTPL ++ GF+ +++ + KEY Sbjct: 268 QALDKARKRANSANLAKDEFLARMSHELRTPLTSVSGFARLLDQTELKT----DQKEYTR 323 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ + LL++I++ILD S++E+ EL E + + + + M A +K +E+ Sbjct: 324 IINLTSGLLLSIIDDILDYSKLESNAIELEEIPFDFENCILDVLEMQTAAAHDKGLELVP 383 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKD 407 I+ + D +RQ++ NL+SN+VKFT+ G V + V T I ++D Sbjct: 384 VIESETPKFLVGDPVRLRQILTNLISNSVKFTSQ-GHVCIHVVPTKISPVESKLKIIVED 442 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + I + +F Q +I G GLGL IA+ + G+ + SK +G + Sbjct: 443 TGTGIPQDSIDNLFQAFSQADTSITRKYGGSGLGLVIAKRLTELMSGEISLESKEGKGTQ 502 Query: 468 VIAILP 473 + +P Sbjct: 503 ITLNIP 508 >gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas sp. SN2] Length = 887 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 18/350 (5%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 I+ +L+A+ + + + + + + + + + Sbjct: 288 IFSLVAILLAVIAAIFTAYRILGPIR------TITHVFNRLSEGQNISSIPGNSRNDEIG 341 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + N + +E L LE S E++ +AE +KS FLA+MSH Sbjct: 342 NLARAAHVFSDKNKQTEILLSEARGLNGRLESLNSELTESKIKAERATASKSIFLANMSH 401 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N I+G E+ + + + Y+ S Q L+++IN+ILD S+IEAG+ Sbjct: 402 EIRTPMNGIIGLIELAQQHPV----PDIVSGYLDKAAYSSQILMSVINDILDFSKIEAGK 457 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 ++ E + SL + I ++ L+A+EKN+ + + PS+ V D + Q+I+N+ S Sbjct: 458 LKIEEVSFSLHSLFDNLIAVIALKAKEKNLVVRFIVSPSIPPQVIGDPLRIAQIIMNIGS 517 Query: 378 NAVKFTAIGGRVHVTV-GWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NAVKFT G++ + G + +G +S I+D+G G++E ++ + F Q A Sbjct: 518 NAVKFTEQ-GQICIRFDGSINDKGNLLSLTMNIEDSGIGMSERQLARIFNPFTQADDATN 576 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I + + GG S +G LP RV P Sbjct: 577 RKYGGTGLGLTIVKQLTDLMGGSLSATSVEGKGSTFTISLPL-RVFKNQP 625 >gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 709 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 9/274 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +L+ +E +++AEE AK+RFLA+MSHE+RTPLNA++G S+ + Sbjct: 213 KLSRDLKERSIRLEEAKQQAEESARAKARFLANMSHEMRTPLNAVIGLSQ----KEYYQA 268 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +++ K++I I+ SGQHLL LIN +LDLS+IE G+ L + L D++ C + Sbjct: 269 SDKQTKDFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCKNIFVEM 328 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGR- 399 ++ + F+ ++AD + QV+ NL NAVKFT G V + V + Sbjct: 329 SKPEVDVFFRSDLEKDFKLFADRTKLLQVVNNLSYNAVKFT-SHGHVDICSDVTHVGDQC 387 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++I D G G+ + +I V F Q +I G GLGL I QS++ G + Sbjct: 388 YLVMTITDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVE 447 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 S+L +G +P V+ + + + Q K Sbjct: 448 SELEKGTCFTVSMPVD-VVEKVELVSDRTRQQKV 480 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 6/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E + AE+ KS FLA+MSHE+RTP+NAI+GF+E++ M P Sbjct: 638 ITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKP--- 694 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ I+ S + LL+L+N+ILD +++E G EL S+ +V I L L+A+ Sbjct: 695 -DQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQAR 753 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K +++ +I +S + +RQV++NL+ NA+KFT I G V + V + + Sbjct: 754 KKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDI-GSVKLKVYAQNQDVIHF 812 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA + + F Q ++ G GLG I++ ++ GG S+L Sbjct: 813 DVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLG 872 Query: 464 EGVEVIAILPNTRVLN 479 +G LP + Sbjct: 873 KGSCFSINLPLKKGEE 888 >gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] Length = 652 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 11/251 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + E ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 272 HDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALT----E 327 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + EY+ I ++ LL LIN+ILDLSRIE+G+ E++ + + ++ E + +L+ Sbjct: 328 DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLK 387 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 + I + + D + QV+ N LSNA+K T G + + + G Sbjct: 388 -MKTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHE-GAITLGLE-VCGEWLK 444 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIA+ ++P + F + QG GLGLPI QSI+ GG+ + S++ Sbjct: 445 VYVTDTGCGIAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLGGKISVESEV 500 Query: 463 REGVEVIAILP 473 G + LP Sbjct: 501 GVGSTFVMTLP 511 >gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 820 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 571 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 626 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 627 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 686 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 687 A-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 744 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 745 VRDTGMGIPKNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 800 Query: 465 GVEVIAILP 473 G P Sbjct: 801 GSCFWFTYP 809 >gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1160 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 9/371 (2%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 ++ + G+ ++ L P + + A+ +A+++ + + A+ Sbjct: 334 VLPAVHNGVVQAVIELGFFRPVQPIDMDMLSRASEQLAIAVRSAIDRTQLEALLDETQRQ 393 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 L Q + V + L + + + + L + + Sbjct: 394 AEELQAQ-QEELRVSNEELEQQSRVLQESQAQMEAQQTELEQSNAQLEEQTQQLEYQKQQ 452 Query: 231 ----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +LSD+ R E+ + KS FLA+MSHELRTPLN+ L ++++ G L +E Sbjct: 453 LLRAQDALSDKARD-LEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQ 511 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y IH +G LL LIN+ILDL++IEAG+ + +++ V+ + L+ A+EK Sbjct: 512 VR-YAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREK 570 Query: 347 NIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 N+ ++P + V D + + Q++ NLLSNA+KFT G V + V S+ Sbjct: 571 NLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSV 629 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI + + + +F Q + G GLGL I++ + GG ++S +G Sbjct: 630 RDTGIGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQG 689 Query: 466 VEVIAILPNTR 476 +LP Sbjct: 690 SVFTLVLPLQP 700 >gi|302916671|ref|XP_003052146.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733085|gb|EEU46433.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1288 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 14/265 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 675 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 734 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 735 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 791 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 849 Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + ++D G GIA+ ++ + +F Q ++ G GLGL I++ Sbjct: 850 ERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 909 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ +G E Sbjct: 910 RLVNLMGGDLWVISEQGKGSEFHFT 934 >gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1140 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 147/328 (44%), Gaps = 27/328 (8%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + T + ++ + A + F + +L+ + + +L+ Sbjct: 368 FIGIITSRWIIRPIMKLKDAATAL-SQGEFNQQVNIERSDELGVLAKAF--NSMARQLQE 424 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + + + ++ + K FLA+ SHELRTPLN I+G +E + G L ++T Sbjct: 425 SFTSLETKNAELQQLDKLKDEFLANTSHELRTPLNGIIGIAESLIDGATGSLPDKTVSN- 483 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I SG+ L NL+N+ILD S++ EL I + +I + + Q +K++++ Sbjct: 484 LALIVSSGRRLSNLVNDILDFSKLSHNNMELEIKPIGMREISEVVLTLSQPLIGKKSLQL 543 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------------- 397 I P + V ADE M+Q++ N++ NA+KFT G V V+ Sbjct: 544 INAISPEVPLVDADENRMQQILHNIIGNAIKFTEK-GIVEVSAEVVDSSSKLLQEGYIKI 602 Query: 398 ---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + I++ D G GI E ++ + +F QG + G GLGL + + + Sbjct: 603 VESNDSSTQNQRLAITVADTGIGIPEDKLERIFEAFEQGDGSTAREYGGTGLGLAVTKQL 662 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 + H G+ + SK+ G + I LP ++ Sbjct: 663 VELHQGEIWVSSKVGVGSKFIFTLPISQ 690 >gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 2/269 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + + Q+ + EL + + RAEE N KS+FLA+MSHELRTPLN Sbjct: 495 RLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLN 554 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ G L +E Y+EY DI SGQ+LL +IN+ILD+S+IEAGR +L Sbjct: 555 AIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEP 614 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + E + ++ RAQ+K + + I+ ++ V AD + +Q+++NLLSNAVKFT Sbjct: 615 LDLAKTLAESLRVVSGRAQDKRLVLDADIEGNIPIV-ADRRATKQIMVNLLSNAVKFTPE 673 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGRV + + I D G GI + + F Q + G GLGL IA Sbjct: 674 GGRVTMR-SRVFDDKVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIA 732 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 +S+ HGG +RS++ G V LP Sbjct: 733 RSLTQLHGGSMRLRSRIESGTVVRVTLPR 761 >gi|4097445|gb|AAD09491.1| histidine kinase FIK [Nectria haematococca mpVI] Length = 1283 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 675 ELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 734 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V + Sbjct: 735 DTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFDA 790 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 791 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 849 Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + ++D G GIA+ ++ + +F Q ++ G GLGL I++ Sbjct: 850 ERVEQRNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 909 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ +G E Sbjct: 910 RVVNLMGGDLWVISEQGKGSEFHFT 934 >gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2] Length = 1240 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 1/271 (0%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L+ +S + LI E + +S+ ET + +E + AK+ F +++SHELRTP Sbjct: 564 SRVLYNLLTHQISSAIKFTQLITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTP 623 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L ILG E + E + I + LL LIN +LD S+I+AG+ L+ Sbjct: 624 LTIILGQVEAVLSGQYYKNTLEPNSDIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNR 683 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 +++ + I ++ A +KNI + + + + D+ VI NL+SNA+KFT Sbjct: 684 QPVNINRFLSSYISAVKSSASQKNINMIFVDNADDTFGFIDKDLFEAVIANLISNALKFT 743 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + + + I +KD+G GI + ++ T+ F Q + S +G G+GL Sbjct: 744 DSEGYIIIELNKL-DTSFEIVVKDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLA 802 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + I+ H G+ + S L +G LP Sbjct: 803 YTKEIVELHEGKISVSSILGKGSVFAVSLPV 833 >gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 701 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 177/465 (38%), Gaps = 64/465 (13%) Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 + N T ++V G W +L Sbjct: 239 WPWNVGVVGRVARTGKAALLTDIAHDSEWQLSTPDVRAE-----IVVPVRVEGEAWAVLV 293 Query: 126 LVE-PGTWTPEYLTIYKSATLLIAL-------SISALSNFMLPYAVFLSFFPVVVALSTQ 177 L + A +A S S L + L+ P+ +AL+ Sbjct: 294 LSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQLQQTLASLPLGLALTDG 353 Query: 178 --AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE-LEVAKSL 234 I+ + L + A Y+ + + +K LS E D AE Sbjct: 354 EGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELTDFFAECQAQPDET 413 Query: 235 SDETRK---------------------------------RAEEENLAKSRFLASMSHELR 261 + + R E + K+ F++ +SHELR Sbjct: 414 LELALRLSEPLQDLKLRSTPVKDAQHQITGRLVVIEDVTREREIDKMKNEFVSVVSHELR 473 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL +ILG++E++ P+ +E++ ++ L +++++L+LSR++AG+ +L Sbjct: 474 TPLTSILGYTELLLAREFKPV---ERQEFVQTVYDQANQLSKMVDDLLNLSRLDAGQIKL 530 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + +SL I+RE L E + I + ++AD+ +RQ++ NLLSNA+K Sbjct: 531 NRWVVSLHQIIREITKQLNETLSE-KHRLLIDIPEGIPPIFADKDKVRQILTNLLSNAIK 589 Query: 382 FTAIGGRVHVTVGWT-----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ GG+V + V + R I+++D G GI+E ++P + T F + + Sbjct: 590 YSPNGGQVALIVRELRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPKLFTRFFRVDNS 649 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I ++++ HGG+ S L G LP Sbjct: 650 TTRKIGGTGLGLSITKALIELHGGRIWATSTLGRGTTFWVTLPIA 694 >gi|189346221|ref|YP_001942750.1| histidine kinase [Chlorobium limicola DSM 245] gi|189340368|gb|ACD89771.1| histidine kinase [Chlorobium limicola DSM 245] Length = 691 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 125/277 (45%), Gaps = 25/277 (9%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + +K AE + AKS FLA++SHE+RTPLN I+G SE++ ++ L + Y Sbjct: 281 ENLKKAKKEAETASQAKSEFLANISHEIRTPLNGIIGMSEMLLDASLDRL---QQRHYCA 337 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I S + L LI ILD S++E+G+ + S + I + +L A +K +++ Sbjct: 338 TIFVSAKKLNQLITNILDFSKVESGQLDKETSVFDIGTICHDVFCLLNENAIKKGLQLTI 397 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407 + + +RQV++NLL NA+KFT G V + + S IS++D Sbjct: 398 DTSNEIPESIIGYPVYLRQVLINLLQNAIKFTYR-GEVALNIEPVSDTPGKLILRISVRD 456 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI E + + F Q E G GLGL I ++ GG + S +G E Sbjct: 457 TGIGIPEAQKKLIFQRFTQLDATATRKEGGAGLGLAITSKLVEYMGGTLNLDSTENKGSE 516 Query: 468 VIAIL--------PNTRV--------LNFIPEDNHES 488 L P T V + PE N E+ Sbjct: 517 FWFTLQFDKLHEKPTTPVIAEVRPAGIPKQPETNQEA 553 >gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 771 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AEE + K FLA+MSHE+RTPLNAI+GFS+++ + PL Sbjct: 519 IQRIKDTENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E+I I ++ LL LIN+ILDLSRIE+G S + L ++ + QL Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 E +E+ ++ + +D + QV N ++NAVKFTA G + + ++ I Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + + V F + QG GLGL I QSI+ G + S++ Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750 Query: 464 EGVEVIAILP 473 G + LP Sbjct: 751 VGSKFTISLP 760 >gi|294653541|ref|NP_714785.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|293630747|gb|AAN51800.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 841 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 91/421 (21%), Positives = 159/421 (37%), Gaps = 31/421 (7%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L++ K + ++ + + L + T + Sbjct: 277 FTVLSIGIFMCMFIKSLFPEEVSSFFINSAIGVFGCSSFTLALPVRVFTEFFSIIFVLIS 336 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 T L L +L F VV+ + + IS G+ Sbjct: 337 FLPLGLTTYLFKAHKMKRKGATLILIAYLIFSTVVLNDILFTLGYISTGYISYIGITVFI 396 Query: 197 LSFFTYITYHLFKSNVKILSCQAE-----------KDDLIAELEVAKSLSD--------- 236 + L ++ E ++L+A E+ + + Sbjct: 397 FFQAGVLAQQLTQAFNHSEDLALELKSTLQENIETHNELLALKELQNTNLEFQVQSRTRE 456 Query: 237 --ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R AE N KS+FLASMSHE+RTPLN I+G E + + +E+ + I Sbjct: 457 LLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKSTPL----DESQQHIRNLI 512 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +SG++LL +IN+ILD S++E + L + V E I + +A +K + + Sbjct: 513 QKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDY 572 Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGP 410 P + D++ + QV+ NL+SNAVKFT G++ + + I + D+G Sbjct: 573 SPDFIDKSVGDKRRITQVLSNLISNAVKFTDS-GKIQIRAFSEKIETKIEYKIQVIDSGI 631 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI +I + F Q +I G GLGL I++ ++ G+ + +G Sbjct: 632 GIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEF 691 Query: 471 I 471 Sbjct: 692 T 692 >gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] Length = 570 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 378 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 379 ---DEAELRYVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 435 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 436 FSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTK-GSITLSYSLEDE 494 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 495 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVNRMGGKIGV 550 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 551 ESREGEGSCFWFTHP 565 >gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016] gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 1072 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ + +L + S+ +I L N LP A+ Sbjct: 165 RTIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227 +AL Q + ++ + + L + L + + Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + ++ + +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y+ IH S LL +IN+ILD S+IEAG+ + + L D+ ++ +A EK Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402 +E+ + + D + Q+I+NL++N+VKFT G + V+V Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D G G+ + ++ ++ T+F Q + G GLGL I + ++ GGQ + S+ Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513 Query: 463 REGVEVIA 470 +G I Sbjct: 514 GKGSHFIF 521 >gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN] gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN] Length = 844 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 115/488 (23%), Positives = 192/488 (39%), Gaps = 42/488 (8%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 +P L +F + FP++ + + S + + Sbjct: 105 FAPAGLLGAGTQTTAWIYFLWHGGFPLFVIGYTQLQNVKDSPAHPRDRLFGHVVPYVIAA 164 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-------FMLP 160 I + G + L ++ G + + +L A+ L Sbjct: 165 IAVASGLTLLASMEDALPVIMAGDIDASAKIVVAAIVWTFSLIALAILWRRRSHSVLDLW 224 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT---------YHLFKSN 211 V + + AL+ + L + + F I L S+ Sbjct: 225 LMVVMCAWLFDSALAAVLNHGRYDLGWYAGRIYGLFAASFVLIVLLLENGKLYARLADSH 284 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + S + L +LE +L E ++ +E + KS FLA+MSHELRTPLNAI+GFS Sbjct: 285 ERERSKTKDLQQLTVQLESVNNLLAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFS 344 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV++ +G + E++ DI SGQHLL+LIN+ILDLS+IEAG+ L + + Sbjct: 345 EVLKDGLVGEIT-PKQHEFVSDIFASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAM 403 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +R + +++ +A I + + L D + +Q++ NLLSNAVKF+A G+V + Sbjct: 404 LRNSLSIVKEKASAHAILLQFDVAEPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTL 463 Query: 392 TVGWTS------------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 I++ D G GI+ ++P + +F Q Sbjct: 464 QARKVQRAAIETWATQQPTSLRMPLPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQL 523 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++ +G GLGL + ++ HGG + S G LP R + D E Sbjct: 524 DSSLSRVSEGTGLGLALVLKLVQLHGGTVALASTPGHGSTFTVWLP-WRKTDAATGDTDE 582 Query: 488 STQYKCYA 495 + A Sbjct: 583 TAPLHAVA 590 >gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1112 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + +++AE+ ++AKS FLA+MSHE+RTP++ I+G +++ E+ + Sbjct: 558 ITERKNAEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASES----AD 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ K+ + S + L +IN+ILDLS++EAG+ +L SL +VR + + ++A+ Sbjct: 614 QSRKDLVDMTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQAR 673 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 + I + D L V D + QV+ NL+SNAVKFT G V + V Sbjct: 674 NQGIALKVDADSRLPEYVRGDAHRLEQVLRNLVSNAVKFTQA-GHVLIRVKAMDIDEHKA 732 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D+G GI+ +P++ SF Q I QG GLGL I+Q ++ GG+ ++ Sbjct: 733 TVEFQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQ 792 Query: 460 SKLREGVEVIAIL 472 S G L Sbjct: 793 STPGRGSVFSFAL 805 >gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1] gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1] Length = 1689 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ + +A+ N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 932 ITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGMSYLALQTDLA---- 987 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+YI +H++ LLN+IN+ILD S+IEA + + L +++ + ++ + + Sbjct: 988 EKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIGFKVE 1047 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400 E ++ + I D + + Q++LN +NAVKF+ G + ++ G Sbjct: 1048 ENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSDILLSCQAELDKQGAT 1107 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D+G GI + + SF QG + G GLGL I + + G+ S Sbjct: 1108 LTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEVWCES 1167 Query: 461 KLREGVEVIAIL 472 +L +G L Sbjct: 1168 ELGQGSRFYLRL 1179 >gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1005 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 13/324 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---LFKSNVKIL 215 L P+ + T H +++ L L + ++++K L Sbjct: 542 LMTRAAAGMGPL-ASELTHGRHGPHARHLAVPVRLDGRLGAVAVLLDKPTPFTRADIKQL 600 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E + ++ AE N AKS FLA+MSHELRTPLN +LG +++E Sbjct: 601 DLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE 660 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + NE + SG+ LL ++++ILDLSRIEAGR EL S + VR+ Sbjct: 661 AGDLDRDQNE----LVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQV 716 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-- 393 M A+ + + + + D VW D +RQ++ NLL NA+KFT G V V V Sbjct: 717 YDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHE-GTVGVEVCA 775 Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI + ++ F Q + G GLGL I + ++ Sbjct: 776 VRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHL 835 Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475 GG + S L EG V LP Sbjct: 836 MGGGLNVESALGEGTAVHVCLPFR 859 >gi|54308425|ref|YP_129445.1| putative sensor protein TorS [Photobacterium profundum SS9] gi|46912854|emb|CAG19643.1| Hypothetical sensor protein TorS [Photobacterium profundum SS9] Length = 983 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 18/306 (5%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDE--- 237 H+ + + F + + +++ E+ +ELE S +E Sbjct: 395 HMGRAIMVARDTASERFRLTLVERKIRQELQLHKESLERLVAQRTSELEKTNSRLNEEVI 454 Query: 238 ----TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 R AE+ N AKS FLA+MSHE+RTP+N ILG + ++ + N+ Y+ Sbjct: 455 NHEKARAEAEKANRAKSAFLATMSHEIRTPMNGILGTASLLGDTGL----NQQQARYLNV 510 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+RSG+ LL+++N+ILD S+IEAG ++ SL ++V + ML+ RA K+I++ Sbjct: 511 INRSGETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNH 570 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGP 410 ID S+++VW D +RQV++NL+ NA+KFT G+V + V + D+G Sbjct: 571 IDDSMNNVWLGDVTRIRQVLINLVGNAIKFTDQ-GQVTIAVSMNPDMPDELLFEVTDSGI 629 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E E + +F Q K+ G GLGL I++ I+A G+ + S + G Sbjct: 630 GIDEAEQDILFNAFKQAEEGRKT-IGGTGLGLAISRHIVAAMEGEIGVDSTINVGSCFWF 688 Query: 471 ILPNTR 476 +P R Sbjct: 689 SIPLER 694 >gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1001 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 178/444 (40%), Gaps = 29/444 (6%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPM--WSL-ITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + A I F +F W + L A + + ++ Sbjct: 203 YALSTLFYASAWAAIFGVFEYLNLFSAKDWLMPGFLLGCAFSAFFQIEFFRLNLTAKRTM 262 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS-------NF 157 ++ + L + L ++I +A LL LS+ ++ Sbjct: 263 LFLLALGCLCLLA-----LPIAFYNQALGLIIVSILTTAVLLTGLSVGLVAWKRGYKPAR 317 Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILS 216 A P VV + + DI L G + A K + L Sbjct: 318 YFVIASLCVIIPNVVGNLLNLRVLPSINVDIYLLGFIGIAADTLILAFALAEKMRLVNLR 377 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAILG 269 K L +E E ++ E NLAK FLA+MSHE+RTPL +I+G Sbjct: 378 NSQLKSQLKQTVEFRTQALREANQKLAQSNQELIEANLAKDHFLANMSHEIRTPLTSIIG 437 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ + +G ++ + I+++G HLL +IN+ILDLS+I+A + + L Sbjct: 438 YADGML---LGDIDKTEQERVTSIIYQNGAHLLRIINDILDLSKIDANKLDFKSQPCHLF 494 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + ++ RA++K + D L + D ++Q++ NL +NA+KFT G Sbjct: 495 SLLGQIESVVGKRAKDKGLGFHVNYDFPLPEKIITDATRLKQILFNLTNNALKFTHS-GH 553 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + V +G I++ D G GI++ ++ + F Q I G GLGL IA+ + Sbjct: 554 ICLDVKA-AGSTLTINVVDTGEGISQNDVQKLFNPFTQADSVINRQVGGTGLGLSIAKRL 612 Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472 GG +S+ R+G + Sbjct: 613 AQGLGGDINAKSQPRKGSTFTITI 636 >gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 751 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 17/341 (4%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-- 221 + P + + ++ + + A I L KS + + + E Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENNT 340 Query: 222 --DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + EL AK +++ + A + +KS FLASMSH++RTP+NAI+G + +I Sbjct: 341 RLETINTELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH--- 397 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N + EY+ I S QHLL +IN++LD+S+IEAG+ S S S+++ ++E M Sbjct: 398 DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMF 457 Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + +EK+ + + + V +D + Q+ NLLSNAVK+T GG++ V Sbjct: 458 CPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECET 517 Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + ++ DNG G++E + +F + ++ + QG GLG+ I ++++ G Sbjct: 518 KSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMG 577 Query: 454 GQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490 G + S+L G + V + + + E+ Sbjct: 578 GTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618 >gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 669 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 11/242 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ E K Y Sbjct: 407 EQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PTADTPEEQKLYS 462 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+++ LL LIN+ILDLS+IEAG E + I+L ++ R + + R + ++ Sbjct: 463 DIINQNSDILLQLINDILDLSKIEAGTLEYVKRPINLGEVCRTIYAVHKERIKG-GVDFI 521 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D + Q+I N ++NA KFT G + G + +KD G G Sbjct: 522 FDNGEEDLQMEGDPNRIMQIITNFITNATKFTHA-GEIRFGFER-EGENVRVYVKDTGIG 579 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ + F + S QG GLGL I + I+ GG+ + S+ +G I Sbjct: 580 IEKEKVGHIFERFVKL----NSFVQGTGLGLSICRMIIEKIGGEIGVTSEFGKGSTFYFI 635 Query: 472 LP 473 +P Sbjct: 636 IP 637 >gi|300773123|ref|ZP_07082992.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300759294|gb|EFK56121.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 1198 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 180/390 (46%), Gaps = 17/390 (4%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 LL+ I G+C ++ L + + +K A+ I+L+++A + + Sbjct: 383 HILLLPVILNGMCIGVIELGSAHKFDALKIGFFKEASSTISLALAAAKSRKQVQTLLEET 442 Query: 168 FPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILS---CQAEKD 222 L Q ++ A L + L +SN ++ EK+ Sbjct: 443 QAQAEELQAQHSELENLNTELEAQTQKLQASEEELRVQQEELLQSNQELEERSKLLEEKN 502 Query: 223 DLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETM 279 LIAE + E +++AEE L+ KS FLA+MSHELRTP + + E Sbjct: 503 HLIAERNL------EIQEKAEELALSTKYKSEFLANMSHELRTP-LNSILLLSRLLSENT 555 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 NE E I SG LL+LI+EILDLS+IEAG+ EL + L D+ +E + Sbjct: 556 DDNLNEDQIESAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVKLSDVTQELNSLF 615 Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397 +EK +++ + P L S++ D + QV+ NLLSNA+KFT+ G + +T ++ Sbjct: 616 APIVKEKALDLNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSN 675 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++KD G GIAE + + +F Q + + G GLGL I++ I GG+ Sbjct: 676 RNNIVFAVKDTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGLGLSISREIARLLGGEIR 735 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++SK EG I+P ++ I E Sbjct: 736 LQSKENEGSIFSLIIPKSKQTTAISPSTDE 765 >gi|254448236|ref|ZP_05061698.1| periplasmic Sensor Hybrid Histidine Kinase [gamma proteobacterium HTCC5015] gi|198262103|gb|EDY86386.1| periplasmic Sensor Hybrid Histidine Kinase [gamma proteobacterium HTCC5015] Length = 527 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 183/474 (38%), Gaps = 40/474 (8%) Query: 31 MDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLG 90 RE+ + + F++ +A I F + P W++ + L Sbjct: 28 PRVLRELFLAQYRQFTLNTTAILFFLIALAIIFHDFLRTPSVLAWTVAHMLTGPYFTYLF 87 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIAL 149 ++ N + + W + L + G W ++ L P I + ++IA Sbjct: 88 RRFSNIPEHKRDYFKWYVISLRMECFSGFMWGIMPLAFFPIYDNLTLPIIILGSVIVIAA 147 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 +++ + F + P + L I+ + + + L + ++ + Sbjct: 148 AMALM----FLPGGFAVYGPPAIFLQATTIIWLRPDLFIMGLLGYMYLGMSVVTSLNVNR 203 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + + D++ +E N+AKSRFLAS SH+LR PL+A+ Sbjct: 204 AVARASLLRFKNQDMLESVEQ--------------ANVAKSRFLASASHDLRQPLHALSL 249 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 V+ + E ++ + + +S L L N +LD+S+++A ++ + L Sbjct: 250 LLGVLSNKR------EYREDIVQRMQKSVSSLEMLFNSLLDISKLDANAVDVHIQDVPLG 303 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 D++ + A +K + I+P + V +D +++++ NL+SNA ++T GG + Sbjct: 304 DVLHQLKEDYSGAAVQKGLGFHIDINPQHA-VRSDPILLKRILSNLISNAFRYTPAGGHI 362 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V G I ++D GPGI + + F Q + +G+GLGL I + + Sbjct: 363 DV-AARQEGDKLVIEVRDTGPGIPADKHEEIFAEFVQLDNPERDRNKGLGLGLAIVRRLC 421 Query: 450 ANHGGQFLIRSKLR-----EGVEVIAILP------NTRVL--NFIPEDNHESTQ 490 + S G P +RV + P N E + Sbjct: 422 HLLAHDVDLHSTADPLSGHTGTTFCIRAPLGAAPSASRVAMRDAPPASNSEHSD 475 >gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] Length = 762 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 17/341 (4%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-- 221 + P + + ++ + + A I L KS + + + E Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENNT 340 Query: 222 --DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + EL AK +++ + A + +KS FLASMSH++RTP+NAI+G + +I Sbjct: 341 RLETINTELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH--- 397 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N + EY+ I S QHLL +IN++LD+S+IEAG+ S S S+++ ++E M Sbjct: 398 DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMF 457 Query: 340 QLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + +EK+ + + + V +D + Q+ NLLSNAVK+T GG++ V Sbjct: 458 CPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECET 517 Query: 399 R-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + ++ DNG G++E + +F + ++ + QG GLG+ I ++++ G Sbjct: 518 KSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMG 577 Query: 454 GQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490 G + S+L G + V + + + E+ Sbjct: 578 GTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618 >gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] Length = 828 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217 A+ S +V+ + S + L+ K + ++ Sbjct: 238 AMITSGVILVIVMLCWLGFGTWFRVNSKLDAIIHTLTALINDEEKQTKVKVDGSDELTIF 297 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ Sbjct: 298 AQQVNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 357 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + +E + DI S Q LL L+N+ILDLS+IE+GR ELS + ++V + ++ Sbjct: 358 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMV 413 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + Q +A K +E+ + ++ V D+ ++QVI NL+SNAVKFT G + V V + Sbjct: 414 LFQSKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFT-ESGHIRVDVSYD 472 Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 ++D G GI + ++ T+ F Q + G GLGL I + +++ Sbjct: 473 ELSEKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSM 532 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GGQ + S G + Sbjct: 533 MGGQLIATSTKGVGTCFEFSI 553 >gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1090 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 35/297 (11%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K +K I E + A+ + ++ A+ N AKS FLASMSHELRTPLNA Sbjct: 552 ISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNA 611 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILGF++V+ + N +++ + I RSG+HLL LIN+IL++S+IEAGR ++ Sbjct: 612 ILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSF 668 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ ML L+AQEK +++ + P + + DE +RQV++NLL NA+KFT Sbjct: 669 DLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEE 728 Query: 386 GG---RVHVTVGWTSGR---------------------------GQYISIKDNGPGIAEG 415 GG RV V G ++D+GPGIA Sbjct: 729 GGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPE 788 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E+ + +FGQ + A++G GLGLPI++ + GG + S L +G + Sbjct: 789 EVDQLFAAFGQTETGRQ-AQEGTGLGLPISRKFVQLMGGNISVSSILGQGSLFAFSI 844 >gi|229515211|ref|ZP_04404671.1| sensor histidine kinase [Vibrio cholerae TMA 21] gi|229347916|gb|EEO12875.1| sensor histidine kinase [Vibrio cholerae TMA 21] Length = 736 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVK--VKLAITEPVTEDVKPTKAKTY 599 >gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328] gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328] Length = 1064 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 15/265 (5%) Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 D+ + VA+ L+ + + N K FLA +SHEL+TPL A+LG S +++ + + Sbjct: 325 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 382 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L++ +Y IH+SG+HL+ ++N+ILDL+RIE G+ EL+ +++ + + + Sbjct: 383 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAV 441 Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 Q+ +I+ +I+P L ++ ADE +RQ+++NL+SNA KFT GG + Sbjct: 442 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYM 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + V ++ D G GI E + + F Q + +G GLGL + Q + Sbjct: 502 GLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLA 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG S +G E +LP Sbjct: 561 RLHGGDISFISHQGKGTEFTLLLPP 585 >gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 802 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ A N K FLA++SHE+RTPLN ++G +V+ + N+ ++ I Sbjct: 413 EKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQVMNSAKL----NQEHRNCI 468 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +S ++LL ++++ILDLS++E G +L E SL ++ E I + + +A++K +++ Sbjct: 469 SVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLEESINLFKPQAEKKEVDLS 528 Query: 352 Q-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISI 405 + S + DE +RQ++ NL+ N++KFT G + V + ++ Sbjct: 529 YSIFPETESYYFGDEGRIRQILFNLIGNSIKFT-DHGEIRVEARAGPGTCQDKNNLHFTV 587 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI E + SF Q ++ +G GLGL I + ++ G I S L G Sbjct: 588 SDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRLIELMEGSIKIESSLHHG 647 Query: 466 VEVIAILPNTRVLNFIPEDNHES 488 + + P N +S Sbjct: 648 TTISFTISLRIADPPEPNQNKKS 670 >gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 761 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 111/269 (41%), Positives = 158/269 (58%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + +EL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 492 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 551 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+I++ILD+S+IEAG +L Sbjct: 552 NAILGFSEILQNQMFGPLGSAKYDEYARDIHDSGKHLLNVISDILDMSKIEAGHLKLHRE 611 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I L ++ AD + M+QV+LNLLSNAVKFT Sbjct: 612 RIDLVPLIEESLRFTAIPAAEKNILIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 670 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V ++I D G GI + + F Q ++ G GLGL I Sbjct: 671 NGGRIAVRTRRV-DGAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 729 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ A HGG+ IRS+ G + +P Sbjct: 730 SRSLTALHGGRMKIRSREAVGTVISLRIP 758 >gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 955 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 104/389 (26%), Positives = 163/389 (41%), Gaps = 31/389 (7%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++V W LLT V +Y L+ A SI AL + + ++ Sbjct: 329 RVIVAARIAAPDWVLLTDVPRAALLSSVKGLYWDYWLIAAFSILALVALPVLVIMRVTLP 388 Query: 169 PV-VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 V + + + I + A + + + + ++L Sbjct: 389 SVRQLVTAAERIRGGDLEQRFEASGTREFVHIGDALNGMAQQLRETFAALAKTNEELEQR 448 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E + E A+ N AKS FLA+MSHELRTPLN ILG++++++ E Sbjct: 449 VEQRTAELKEATVAADAANRAKSDFLANMSHELRTPLNGILGYAQILKRSR---SLGEQD 505 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I SG HLL LIN++LDL++IE+ E+ + + + ++RA++K Sbjct: 506 LRGVEVIAESGSHLLTLINDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKG 565 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------- 399 I K P+L V AD++ +RQ++LNLL NA+KFT G V TV G Sbjct: 566 IAFVFKPGPALPEGVRADQRRLRQILLNLLGNAIKFT-ENGSVTFTVAEVPGGSRGARKD 624 Query: 400 ---------------GQYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLP 443 I+D G GI + + F Q + +G GLGL Sbjct: 625 LPEDGASPESRTKTHRIRFEIEDTGTGIGAEHLDQIFLPFKQVGDKSRHR--EGTGLGLA 682 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+Q I+ GG +RS+L +G L Sbjct: 683 ISQRIVTLMGGSIQVRSELGKGSVFWMDL 711 >gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] Length = 896 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN++ + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 + + P++ E T Sbjct: 749 ATIEDVTPDEVIEET 763 >gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC BAA-613] gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC BAA-613] Length = 805 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 141/272 (51%), Gaps = 12/272 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++ + Q E + + AK L ++ K+AE+ N AKS FL+ MSH++RTP+NA Sbjct: 374 LSRNIDEERRVQQET---LEKERQAKLLLEDALKKAEKANKAKSDFLSRMSHDIRTPMNA 430 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +E+ + + + E ++Y+ I SG HLL LINEILD+S+IE+G ELSES + Sbjct: 431 IIGMTELAQ---LHIGDEEKQRDYLNKIASSGAHLLGLINEILDVSKIESGVMELSESPL 487 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAI 385 +L + E M+++ + E ID S V D + +RQV++N+L NA K+T Sbjct: 488 NLRALAGEAAEMVRISMENSQQEFQVDIDESFDPWVMGDARRIRQVLVNILENASKYTGQ 547 Query: 386 GGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G++ +V I+D G G+ + + F + + S G GL Sbjct: 548 RGKITFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHIFEPFSRADDSRTSKVPGTGL 607 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G+ I +++++ G + S+ +G L Sbjct: 608 GMTIVKNLISMMDGDIRVESEYGKGSRFTVTL 639 >gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB] gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB] Length = 680 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 7/287 (2%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + +++ + + L E+ S + R+RA + AKS FLA+MSHE Sbjct: 118 YRGVGRDVTETHSMQVELHRYRSHLEDEVRRRTEESLKERERAISASQAKSIFLANMSHE 177 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G + ++ E E + + S HLL++IN+ILD+S+IE+G Sbjct: 178 IRTPMNAIVGLTHLLRKEI----TTPAQLEKLAQVSASADHLLSVINDILDISKIESGNA 233 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 L E L ++R ++ LRAQ K +E+ I + + D + QV++N L NA Sbjct: 234 ALDELDFELEGMIRRVSSVIALRAQAKGLELIVDIRTLPTVLHGDPTRLSQVLINFLGNA 293 Query: 380 VKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT G R + + ++D G GI+ + +F Q + Sbjct: 294 VKFTVQGSITLRGRIEAETATDMVVRFEVEDTGIGISPDAQEKIFEAFEQADQSTTRNYG 353 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL IA+ G +RS G +V PE Sbjct: 354 GTGLGLAIAKHAAKMMKGDVGVRSTPGVGSVFWITARLGKVNAAGPE 400 >gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] Length = 1994 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 11/268 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + E R +A NLAKS FLA+MSHE+RTP+NA+LGF ++E + P + Sbjct: 1216 ITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQRALDPTSA 1275 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ IH +GQ LL LIN+ILD S+IEAG E+ + L +++ ++ A Sbjct: 1276 DLVRK----IHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAAG 1331 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 +K +E+ + + D ++QV++NLL NA+KFTA G V + V + G Sbjct: 1332 DKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTAR-GEVELRVEQVAEHGDRL 1390 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D G GIA + +F Q +I G GLGL I+Q ++ GG+ + Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487 S L +G L R P+ E Sbjct: 1451 STLGQGSAFYFTLALQRD-PNAPDPAAE 1477 >gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 810 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 158/313 (50%), Gaps = 11/313 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + A LA + I+ L V L+ Q L +LE + Sbjct: 279 IALLVEMKQWEAFAPARQLAITVVLVGLISVALLSICVYWLAKQLSLSRL--QLENSSRQ 336 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ + AE N AKS FLA MSHELRTPLNAILGF++V+E + + +E + I Sbjct: 337 LEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERDPLLTH---QQQESLAII 393 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +RSG+HLL LIN++L++S+IEAG+ L A L ++++ M Q RA+ K + + + Sbjct: 394 NRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVNL 453 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGP 410 L V +DE +RQV++NLLSNAVKFT G V + + T ++ D G Sbjct: 454 AADLPRYVISDEGKLRQVLINLLSNAVKFTDQ-GTVTLEAAYQHHTGANYLTFAVADTGR 512 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA E + F Q + +K+ E+G GLGL I++ + GGQ S+L +G Sbjct: 513 GIAPEEQEHLFQPFFQSAAGLKT-EEGTGLGLSISRQFVDLMGGQISANSQLGQGTVFKF 571 Query: 471 ILPNTRVLNFIPE 483 + + + Sbjct: 572 EIKVELAAPVVSD 584 >gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 1287 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 22/307 (7%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + + L L F + ++ ++ +++ + E + + ++ E N Sbjct: 830 LIASARLLGTLCFGSRSCSRFTENQRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREAN 889 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K FLA +SHELR+PLNAILG+++++ + + + + I R+ + L+ Sbjct: 890 RMKDEFLAILSHELRSPLNAILGWAQLLRSRKLSDI---QIAKAMETIERNARMQTQLVE 946 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIM--LQLRAQEKNIEIFQKIDPSLSS---- 360 ++LD+SR+ G+ L +L+ ++ + L +A+E ++ I P + Sbjct: 947 DLLDISRMIRGKLHLHVCTCNLVPLIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSR 1006 Query: 361 --VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDN 408 V D + ++Q+I NLLSNA+KFT GGR+ + + + I + D Sbjct: 1007 FLVSGDIERLQQIIWNLLSNAIKFTPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDT 1066 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467 G GI +P V F Q + + G+GLGL I + ++ HGG + S+ EG Sbjct: 1067 GIGIKPEFLPYVFDRFRQADSSSTRSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGAT 1126 Query: 468 VIAILPN 474 LP Sbjct: 1127 FTVKLPL 1133 >gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1202 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 10/245 (4%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +E+ + + + AKS FLA+MSHE+RTP+NAI+G S + + + YI Sbjct: 473 EELEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDN----KQRHYIS 528 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 ++ S Q LL +IN+ILD S+IEAG+ E+ SL ++ E I ++ A++K + + Sbjct: 529 KVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLII 588 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKD 407 + + + D ++QV+ NL SNAVKFT G V V V ++KD Sbjct: 589 DVASDVPDQLIGDPLRIKQVLTNLTSNAVKFTET-GEVRVKVSTAMMRERECKINFAVKD 647 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ +I ++ SF Q + G GLGL I ++++ GG+ + S+L EG Sbjct: 648 TGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVESRLGEGAR 707 Query: 468 VIAIL 472 L Sbjct: 708 FSFSL 712 >gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca] Length = 1064 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 15/265 (5%) Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 D+ + VA+ L+ + + N K FLA +SHEL+TPL A+LG S +++ + + Sbjct: 325 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 382 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L++ +Y IH+SG+HL+ ++N+ILDL+RIE G+ EL+ +++ + + + Sbjct: 383 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAV 441 Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 Q+ +I+ +I+P L ++ ADE +RQ+++NL+SNA KFT GG + Sbjct: 442 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGSM 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + V ++ D G GI E + + F Q + +G GLGL + Q + Sbjct: 502 GLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLVLCQRLA 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG S +G E +LP Sbjct: 561 RLHGGDISFISHKGKGTEFTLLLPP 585 >gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] Length = 554 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 14/271 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + +E R+ AE K+ FLA+MSHE+RTPLNAI+GF+ ++ G Sbjct: 168 RDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLL-----GTA 222 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +++ Y+ I + LL L+N+ILD+S+IEAG E + + + I+RE + +LR Sbjct: 223 SDQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGIFRLR 282 Query: 343 AQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +E ++ + +P L + ++ + QVI N LSNA K+T G + + Sbjct: 283 LEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQ-GSITMGYEIRENG- 340 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GI E ++ V F + QG GLGL I+++I+ GG+ + S Sbjct: 341 ICFYVSDTGTGIPEDKVSQVFERFTKLDAKR----QGTGLGLSISRTIIKKMGGEIGVTS 396 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 K EG +LP + +F+P + E Q+ Sbjct: 397 KYGEGSTFWFVLP-EKPFDFLPLQSEEKEQF 426 >gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 915 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 35/337 (10%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ 213 + + AL + + + + + L ++ + Sbjct: 345 TIILCIFALLIATGLGILTSQWIAVPIQRLSQASSAIADGKLNQTVIVKGVSEIQVLGES 404 Query: 214 ----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 Q L ++ + E + AE N AKS FLA+MSHELRTPLN ILG Sbjct: 405 FNKMARQLQDSFTALEVRVKQRTAELQEAKLAAELANSAKSEFLANMSHELRTPLNGILG 464 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++++ ET + +G I + G HLL LIN+ILDLS+IEA + E+ + + Sbjct: 465 YAQILMR---SKNIQETDLKGLGIIQQCGSHLLTLINDILDLSKIEARKMEIYPNQFHFL 521 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ +++++A++K I + DP+L V ADEK +RQV++NLL NAVKFT G Sbjct: 522 AFLQAVSEIVRIKAEQKGITFISQFDPALPVSVQADEKRLRQVLINLLGNAVKFTEE-GS 580 Query: 389 VHVTVGWTSG-------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 V VG I+D G G++E + + F Q + K Sbjct: 581 VTFKVGVIESSTIDAEASTFNAINKIRFQIEDTGLGMSEEQKQKIFDPFEQVGDS-KRRA 639 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL I+ I+ Q + S+L EG + L Sbjct: 640 EGTGLGLAISSKIVEVMSSQIRVTSQLGEGSQFWFDL 676 >gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 1092 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 10/286 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDL--IAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 F + + + + L + E++ ++ R+E + AKS FLA+M Sbjct: 497 IFRVVGERWIQLEAAVSESRRWTVVLTDVTEMKKREAELQLLLARSEAADRAKSEFLANM 556 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N +LG +E++ + + K +I I +SG LL +IN+ILD S+I+A Sbjct: 557 SHEIRTPMNGVLGMAELLAKTDL----DARQKTFIDIIVKSGNALLTIINDILDFSKIDA 612 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ L ++A + V + +L A EK+IE+ + P++ V D RQ++ NL Sbjct: 613 GQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPAVPAMVLGDAGRFRQIVTNL 672 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L NA+KFT G V V + ++D G GI++ ++ ++ F Q + Sbjct: 673 LGNAIKFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASST 732 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 +G GLGL I ++ GG + S+ +G LP V Sbjct: 733 RRHEGTGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVHLPMPPVA 778 >gi|85113126|ref|XP_964471.1| hypothetical protein NCU02815 [Neurospora crassa OR74A] gi|1354473|gb|AAB01979.1| Os-1p [Neurospora crassa] gi|28926254|gb|EAA35235.1| hypothetical protein NCU02815 [Neurospora crassa OR74A] Length = 1298 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKANEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850 Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 T + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934 >gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia enterocolitica W22703] Length = 976 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ ++ + V D Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515 >gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 716 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ L + E ++ AE KS+FLA++SHE+RTPLNAI+G + Sbjct: 206 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 261 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E +EYI IHRSG+HLL L+N+ILD+S+I++G+ L + SL DIV + ++ Sbjct: 262 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 321 Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 R Q +E F + + D + Q+I NL SNA+KFT G++ V + Sbjct: 322 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 380 Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D G GI+E ++ V F Q + G GLGL I Q + G Sbjct: 381 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 440 Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484 I S+L G V LP +F P+ Sbjct: 441 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 471 >gi|313497980|gb|ADR59346.1| Integral membrane sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 643 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 136/293 (46%), Gaps = 12/293 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + E + A + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 223 LGHLARHINNLASALEQASDEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + +Y S HLL +IN+ILD SRIE +L Sbjct: 283 VLGMLQLLETTPLSS----EQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ + + ++ + V D +RQ++LNL+ NA+KFT Sbjct: 339 NLGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W Q I S++D G GI + + +F Q +I G GL Sbjct: 399 R-GQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GL IA+++ GG+ S+ G +P + N P T + Sbjct: 458 GLSIARTLAERMGGKLRGESREGLGSTFTLEMPLA-LANPAPVPLTPPTTART 509 >gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 614 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 16/308 (5%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 Q S + I + ++ + +EL + Sbjct: 296 QPWQSFEIDLIHELTDQVGTAIAHAKLFSESEAITRELRTKSRALRQTNSELTRKHQELE 355 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E +++AEE + KS FLA+ SHELRTPLN ++GF ++ + + E E+I + H Sbjct: 356 EAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLVLDDM--ADDEEEQLEFIQESHN 413 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S HLLNLIN++LD+++IEA + EL SA+SL +++ E + + + +E + Sbjct: 414 SAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEEIDKSQRTHIENRGLEFNIVLPA 473 Query: 357 SLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----------RGQYIS 404 +L + +++ + ++QV+LNL+SNA KFT G + +T IS Sbjct: 474 TLDEIKLYSNYQRLKQVLLNLVSNASKFTHE-GNITITAEINPQSFEFDKKTWPGLVKIS 532 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLR 463 + D G G++ + + +F Q A +G GLGL I+Q ++ GG+ S Sbjct: 533 VADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVEAMGGKVKFISMGEG 592 Query: 464 EGVEVIAI 471 G V Sbjct: 593 LGSTVSFT 600 >gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740] gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes] Length = 1263 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 35/314 (11%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + + + + + F ++ +L + + +AE + ++ A Sbjct: 747 WKMIVQILSIALLFVLFMLFVNRNLSREVRRRREVEAE--------------LLKAKELA 792 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N AKS FL++MSHE+RTPLN+ILGF+E+++ ++G + Y +I +SG+ L+ Sbjct: 793 ESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI----KEQRYAENILKSGKVLM 848 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++IN+ILDLSR+EAG+ + + + L +VRE + ++A+EKN+++ ID L + Sbjct: 849 DIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLVIDERLPKIL 908 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGE 416 D +RQ++ NL+ NA+KFT G V ++V + IKD+G GIA+ + Sbjct: 909 VIDGTRVRQILFNLVGNAIKFTHK-GYVRISVERGERESEGGIELVLRIKDSGIGIAQAD 967 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL---- 472 + +F Q S G GLGL I Q + G+ + S+ G E I L Sbjct: 968 SNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQEGLGSEFIVSLQGVI 1027 Query: 473 ------PNTRVLNF 480 P R+ Sbjct: 1028 AGVVDQPLERISPS 1041 >gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 916 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 138/305 (45%), Gaps = 18/305 (5%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA---ELEVAKSLSDETRKRAEE---- 244 +LA + + + + ++ + + L E E + + EE Sbjct: 441 LLADSQALTEELQTQSEELQMQQEELKTFNEKLENQYKESEQKTIELQKAKTALEEQASH 500 Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FL++MSHELRTPLN++L + ++ G L+ EY I SG L Sbjct: 501 LALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGNLS-PKQVEYAETILSSGNDL 559 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 LNLIN+I DL++IEAG+ + ISL +++ Q A++K ++ ++D + Sbjct: 560 LNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPIARQKLLDFTIQLDNDIPKT 619 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEG 415 + D+ + Q++ NLLSNA KFT G V++ V G S+ D G GIA+ Sbjct: 620 FFTDKNRLMQILKNLLSNAFKFTNE-GCVNLHVQRATKISEKGTQIVFSVSDTGIGIAKD 678 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + +F QG G GLGL I + + GG ++S +G +P Sbjct: 679 KQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIELQSIKGKGSTFSVYIPTY 738 Query: 476 RVLNF 480 V Sbjct: 739 DVETE 743 >gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913] Length = 1101 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 8/264 (3%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + L+ I E + A L E + AE+ N+AKS FLA+MSHE+RTP+N +LG Sbjct: 532 EQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIRTPMNGVLGM 591 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +I ++ NE + S LLN+IN+ILD S+++AG+ EL E +L + Sbjct: 592 LNLILDSSL----NEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLELEELEFNLCN 647 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-R 388 ++ + I + + A KNI + I+ + V D ++Q++ NL++NA+KFT G + Sbjct: 648 MLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNALKFTHKGEVQ 707 Query: 389 VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V + + + D+G GI+ + + SF Q + G GLGL I + Sbjct: 708 VIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYGGTGLGLAIVK 767 Query: 447 SIMANHGGQFLIRSKLREGVEVIA 470 + G ++SK +G Sbjct: 768 KLCHLMEGDIQVQSKENKGSNFSF 791 >gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 698 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 12/343 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +AL + + P V+ + V + + L + Sbjct: 81 SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 140 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +V + D+ A +E A+ + DE + RAE N+AKSRFLA++SHELRTPLN I Sbjct: 141 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 199 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++ + P + Y+ SG+ LL L++ ILD SRIEAGR +L+ Sbjct: 200 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 255 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 + +V + +L RAQ+K +EI I L+++ D +RQ+++NL NA+KFT G Sbjct: 256 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTG 315 Query: 387 GRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V++ + G ++++D GPGI E IP + F QG + +G GLGL Sbjct: 316 G-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 372 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I + ++ G RS + G +LP + + Sbjct: 373 ITRRLVERMNGTIEARSTVGRGSTFRVMLPLPAAEGAMSPETP 415 >gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] Length = 679 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 10/379 (2%) Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 G +A W P KS LL+ + + + + A +PV + Sbjct: 49 GGLAAFFTTAAFGFAAHVAWRPAENEYRKSLALLVDIGCQS-ACMYIGGAGAAFLYPVYL 107 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 + LAT L + F +++ + +IA + Sbjct: 108 WTILGNGFRYGTRYLFAGTALATILFGLVLAAHDEFNAHLGMSVSLLCGLPIIALYSRSL 167 Query: 233 SL-SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + + AE +LAKSRF+AS+SHELRTPLNAI+G S+++ + E + Sbjct: 168 LVKLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRLDADQTEMNR--- 224 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + +G+ LL IN ILD SR+E GR ++ +L D V + M+ +A+ K + Sbjct: 225 -TVSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQ 283 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 ++D L V + + +V++NL +NAVKFTA G V V V G ++D G Sbjct: 284 TEVDDDLPQGVCGGRRHLEEVLVNLAANAVKFTAD-GTVSVHVRRADGDMVRFEVRDTGI 342 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + +F Q I + G GLGL I + ++ HGG+ + S++ G Sbjct: 343 GIAPEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWF 402 Query: 471 ILPNTRVLNFIPEDNHEST 489 LP +P+ E Sbjct: 403 ELPL--PEAPLPQAVREDA 419 >gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1159 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 9/369 (2%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 ++ + G+ ++ L P + + A+ +A+++ + + A+ Sbjct: 334 VLPAVHNGVVHAVIELGFFRPVQPIDMDMLSRASEQLAVAVRSAIDRSQLEALLDETQRQ 393 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 L Q + V + L + + + + L + + Sbjct: 394 AEELQAQ-QEELRVSNEELEQQSRVLQESQAQMEAQQTELEQSNAQLEEQTQQLEYQKQQ 452 Query: 231 ----AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +LSD+ R E+ + KS FLA+MSHELRTPLN+ L ++++ G L E Sbjct: 453 LLRAQDALSDKARD-LEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTEEQ 511 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y IH +G LLNLIN+ILDL++IEAG+ + +++ V+ + L+ A+EK Sbjct: 512 VR-YAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSIVEPLRPLAREK 570 Query: 347 NIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 N+ ++P + V D + + Q++ NLLSNA+KFT G V + V S+ Sbjct: 571 NLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSV 629 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI E + + +F Q + G GLGL I++ + GG ++S +G Sbjct: 630 RDTGIGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQG 689 Query: 466 VEVIAILPN 474 +LP Sbjct: 690 SVFTLVLPV 698 >gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 841 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 97/417 (23%), Positives = 179/417 (42%), Gaps = 23/417 (5%) Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129 +W L A + ++ +++ E + +A G T Sbjct: 204 WHTGIWLLGI-ATILLLHYIARRRTADLLRVEEGRR-ENEMAFAAMAEGAVITDSEGTIL 261 Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH------ 183 + +I + L + + + + + ++ + Sbjct: 262 WVNDAFCQISGYAREEVIGANPRILKSGVHDRDFYAALWRQLMQTGHWRGEIWNKRKNGE 321 Query: 184 --VLDISLAGMLA--TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 +IS+ + A ++ + I + + + + L ++ R Sbjct: 322 IYPEEISMQALRAPNGSIHRYISIFSDITERKKTERELASHHERLEEQVRERTEELSVAR 381 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +AE N +KS FLA+MSHELRTPLNA++GFS+++E P + + I+ SG+ Sbjct: 382 DQAEAANQSKSAFLANMSHELRTPLNAVIGFSQLMEK---DPGLLPVQQRNLEIINHSGR 438 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+IL+LS+IE+G+ ++ L ++ + + M+ LRAQ+ +++ + Sbjct: 439 HLLTLINDILELSKIESGKLRMTTEETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPP 498 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEG 415 + D RQ++LNLLSNA+KFT G V + V + S++D G GI+E Sbjct: 499 LIVIDPGMFRQILLNLLSNALKFTPK-GEVCLHVAAEAVSAQQSRIRFSVRDTGIGISEN 557 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + +SF Q + G GLGL I++ + GG+ + S+L G + + Sbjct: 558 DRERIFSSFEQVGP---MHQGGTGLGLTISRRYVEMLGGELSVDSELGNGSDFHFTI 611 >gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 963 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 96/262 (36%), Positives = 141/262 (53%), Gaps = 10/262 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + KD L E++ S R AE NLAKS FLA+MSHELRTPLNA+LGFS ++ Sbjct: 477 ELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLR 536 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 PL ++ + + I+RSG++LL LIN++L++++IEAG +L + + L +VR+ Sbjct: 537 K---DPLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDV 593 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 M+Q+RAQEK +++ + DE +RQ+++NL+ NAVKFT GG V V G Sbjct: 594 TDMMQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQILINLVGNAVKFTQQGG-VTVRFG 652 Query: 395 WTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA + + F Q ++G GLGL I + + Sbjct: 653 LKPNTTPAHLLIEVEDTGSGIAAEDQEKIFEPFVQVGEVAM--QKGTGLGLTITRQFVQL 710 Query: 452 HGGQFLIRSKLREGVEVIAILP 473 GG + SK G LP Sbjct: 711 MGGSVTLNSKPGSGSLFRVELP 732 >gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1449 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + AE+ N+AKS FLA+MSHE+RTPLN ++GF++++ + N Sbjct: 794 ITSMIKQREELKNAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKL----N 849 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET ++Y+ +++S LL++IN+ILD S+IEAG+ EL L ++ + ++ + Q Sbjct: 850 ETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDIITYQVQ 909 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 K +E+ I P L ++AD ++Q+++NLL NA KFT G + + + Sbjct: 910 TKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGNASKFTDQ-GEIELKIEVLSTTGDNT 968 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GI + + +F Q + G GLGL I+ ++ G + + Sbjct: 969 SMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGSKLQLE 1028 Query: 460 SKLREGVEVIA 470 S +G Sbjct: 1029 SVPGKGSLFYF 1039 >gi|298377882|ref|ZP_06987832.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19] gi|298265328|gb|EFI06991.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19] Length = 942 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 547 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 603 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 604 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 663 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V T + D G GIAE Sbjct: 664 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 723 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 724 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 783 Query: 475 TRVLNF 480 ++ Sbjct: 784 GKIKES 789 >gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 685 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 101/473 (21%), Positives = 193/473 (40%), Gaps = 18/473 (3%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91 F ++ + + + ++ + ++V+ I + + L Sbjct: 13 TFSSDMSKEYARADGFMLKLVFVHWVIVSTITAYVFDAYLLGFIGGGALFGITYFAYKSF 72 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + + + L I I + + +L IY+ ++ SI Sbjct: 73 Y----GTQTYRYILALVLLTFSIIMIQQSLGRIEMHFHIFGALSFLVIYRDHKIITLASI 128 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT-----YITYH 206 L + ++ + + + L G F Y+ Sbjct: 129 FTLLHHLIFNYLQQYNITIFDTPIVIFNYGCGFDIVLLHGAFVMFEWFVVANIVLYMDKT 188 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + ++ +L + +E+ + ++ A+ N KS FLA+MSHE+RTP+NA Sbjct: 189 HKELHRAKEALESVNKNLESMVEIRTLELKQAKEEADSANNMKSEFLANMSHEIRTPMNA 248 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GF++++E N + Y+ + S + LL +IN+ILDLS++EAG+ E+ A Sbjct: 249 IIGFTDLLEKSVKDTTN----QNYVKSVQDSSKILLAIINDILDLSKVEAGKLEIQHIAT 304 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + I E + +A+ K +++ I+ S+ S + DE RQV+LNL+SNA+KFT Sbjct: 305 DIRTIGDEIKNVFYHKAKSKALKLKVNIEESVPSSLMLDEVRTRQVLLNLISNAIKFTPE 364 Query: 386 GG-RVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G +++ I ++D+G G+ + E + +F Q + G GLG Sbjct: 365 GFVNLNIFSSLNQDTNLINLTIEVEDSGIGMDKSEQDKMFEAFAQHTNQSNKEYGGTGLG 424 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 L I + ++ GG ++S G ILPN + P + Q + Sbjct: 425 LAITKKLVTLMGGDISVKSSKDNGSTFRIILPNIEIAQSEPIAKLRANQKISF 477 >gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 764 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 146/276 (52%), Gaps = 6/276 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ ++++ + Q +K++ + +T ++ N +KS FL +MSHELR Sbjct: 343 HLAVAIYQAQLYA-QVQEQKNNFEQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELR 401 Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 TPL I+G S + + L + K+Y+ I SG+HLL++INEIL+ S +++G+Y Sbjct: 402 TPLTCIIGLSGTLLHWSQESSNLPIDKQKKYLQTIQNSGKHLLDMINEILEYSNLQSGKY 461 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLS 377 L+ SL+ + + I + A+ + I + I+ S +AD + ++Q++ +LL+ Sbjct: 462 VLAVREFSLMKVAKNVIQRVSDEAEHRRINLELDLQINAQQDSFYADPERVQQILYHLLN 521 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT+ G V + + W + ++D G GI E +IP + SF Q + + G Sbjct: 522 NALKFTSENGTVTLRI-WRENNQVSLEVEDTGIGIKEEQIPLLFESFQQLENSRRRMYGG 580 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + ++ HGG + S + +G I LP Sbjct: 581 TGLGLALTKQLVELHGGTIEVESIINQGSTFIVRLP 616 >gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae] Length = 1268 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + +++AE N AKS FLA+MSHE+RTP+N +LG +++ T+ ++ +YI Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + + + LL L+N+ILD S+IEAG+ EL SL D++++ ++ A++K +E+ Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 635 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407 + + + D ++QV++NL+ NA+KFT G + + SIKD Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q +I G GLGL I++ ++ GG+ + S+ G Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755 Query: 468 VIA 470 Sbjct: 756 FSF 758 >gi|332533527|ref|ZP_08409390.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037074|gb|EGI73532.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 815 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 11/279 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + +L ++ L ++ + +K+++ N AKS+FLA+MSHE+RTPLNA++GFS Sbjct: 410 MVLLLFNQQQIALTRQVAERTHSLAQAKKQSDLANQAKSQFLANMSHEIRTPLNAVIGFS 469 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 + N T Y+ I+ + + LLNLIN+ILD+S+IE+ + + A L + Sbjct: 470 SLARET----DNASTLIGYLDKINSASKSLLNLINDILDISKIESQKLVIESIAFDLGAL 525 Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389 + M + A K IE P + D + Q++LNL SNA+KFT+ G + Sbjct: 526 ITRINNMFEQSAVNKGIEWQVNSKLPLDTWFIGDPMRIEQILLNLCSNAIKFTSQGSVTL 585 Query: 390 HVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 ++ +T+ I++ D G GI + + +F Q + G GLGL IA+ Sbjct: 586 NIETEFTATNKVQLVITVSDTGIGIKPSQHKKLFNAFTQADSSTSRQFGGTGLGLTIAKE 645 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + G ++S++ +G + R+ P+ H Sbjct: 646 LSQLMGADITLKSEVNKGSTFTFSM---RLETTEPKKEH 681 >gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 762 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 23/344 (6%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + P + + ++ + + A I L KS + + + E + Sbjct: 281 LIFLVPAKYVATNTVRLVKLIIWFIILFAVVAAGCMIKGIVTVLRKSQSEAIEIERENN- 339 Query: 224 LIAELEVAKSLSDETRKRAEEE-------NLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 LE + + ++ AE+ + +KS FLASMSH++RTP+NAI+G + +I Sbjct: 340 --TRLETINTELTQAKRAAEQAFEVSNNASQSKSDFLASMSHDIRTPMNAIMGITSLIRH 397 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 N + EY+ I S QHLL +IN++LD+S+IEAG+ S S S+++ ++E Sbjct: 398 ---DAGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQ 454 Query: 337 IMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 M + +EK+ + + + V +D + Q+ NLLSNAVK+T GG++ V Sbjct: 455 TMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEE 514 Query: 396 TSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + ++ DNG G++E + +F + ++ + QG GLG+ I ++++ Sbjct: 515 CETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIE 574 Query: 451 NHGGQFLIRSKLREGVEVIA----ILPNTRVLNFIPEDNHESTQ 490 GG + S+L G + V + + + E+ Sbjct: 575 AMGGTIDVDSELGLGSCFEVFMDLKIAEESVSSALQVEESETYD 618 >gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri] Length = 865 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL +L I+ L + L V P+ ++T + LD + G L Sbjct: 171 VFISTLLLLFSLCIAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 224 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 225 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 284 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL++IN Sbjct: 285 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIIN 340 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + + E +I+L A EK +E+ +++ + V D Sbjct: 341 DVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDS 400 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVL 421 ++QV+ NLL NA+KFT G V + V S + I I+D G GI+E + + Sbjct: 401 MRLQQVMTNLLGNAIKFT-ENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLF 459 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ G S+L G + Sbjct: 460 QAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHI 510 >gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1] gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1] Length = 716 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 12/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E R AE N AKS FLA+MSHE+RTP+N ++ +E++ + + Sbjct: 195 ITPNIRRERELSEARDAAEAANRAKSHFLANMSHEIRTPMNGVVSMAELLRDTAL----D 250 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + Y I SG+ LL +IN+ILD S+IEAG+ EL E L +V E ++Q Sbjct: 251 EEQQMYADTIRSSGEALLVIINDILDFSKIEAGKLELHEETFDLNAMVGEIFRLIQPGIA 310 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K++E+ D L + D MRQ++ NL+ NAVKFT G V V V Sbjct: 311 SKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGNAVKFTEK-GHVTVRVLSVPPMDQPD 369 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G I ++D+G GIA + V F Q G GLGL I + +++ GG+ Sbjct: 370 ALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANRRHDGTGLGLAITKRLISLMGGKMW 429 Query: 458 IRSKLREGVEVIAIL 472 + S++ G + Sbjct: 430 LESEVGRGSAFGFTI 444 >gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1294 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 12/278 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +++ I +A+ D++A K ++ + AEE N AKS FL++MSH++RTP+NAI+ Sbjct: 872 ENHRTICLVRADVTDMLAAERQTKRSLEKALELAEEANRAKSEFLSAMSHDIRTPMNAIM 931 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + + + + + I S +HLL+LIN++LD+S+IE + L I L Sbjct: 932 GMTALA---CAHIDDQDKVSDCLKKISISSKHLLSLINDVLDMSKIERSQITLGRMKILL 988 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + +++ +A+ I + + D + D + Q+ +N+LSNA+KFT GG Sbjct: 989 SRLMHDLAAIIEPQARAAGIHFYVRTDDICNEKFYGDVLRLNQIFINILSNAIKFTPEGG 1048 Query: 388 RVHVTVG-----WTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V V +Y +I+D G GI + + F + + S +G GLG Sbjct: 1049 TVDFMVEELPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIFEPFTR--SSNTSRVEGTGLG 1106 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 L I + ++ GG + SK +G L R + Sbjct: 1107 LSITKGLVDLMGGVITVESKELQGTVFRVELECERAED 1144 >gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688] gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688] Length = 1136 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 13/351 (3%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + TL ++ L F + S A + + Sbjct: 560 ALWSYLQSGLSNYLLLMGVTLTFLGALLGLIYFHETLILEKS----AAAALLGPLRLAFL 615 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAE 243 + + ++++ +T + + + Q I + + R+ AE Sbjct: 616 KVFAALVFASAVIAWWLVLTSESRRVAQEESNRQTGLLLREIELHRQTDAELQQARQVAE 675 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N AKSR++ +SHELRTPLN+ILG++++++ + P + I I RSG+HLL+ Sbjct: 676 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDVSIP---AARQPAIRVIRRSGEHLLS 732 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 LI LD++RIE+G+ + L + +++ + M +L+A+ K + ++ L V Sbjct: 733 LIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVR 792 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 AD+K + Q+++N+L NAVKFT GG V + I I+D GPGI + E+ + Sbjct: 793 ADQKRLSQILINILGNAVKFTRQGGVVFRLRYARE---LAVIEIEDTGPGILKEELDEIF 849 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F +GS A S G GLGL I++ + GG+ +RS + G L Sbjct: 850 EPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELSVRSVVGSGTVFQIRL 900 >gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 810 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ + +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPLPECYLYTDKNRFTQVISNFINNALKFTQQ 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + ++ F + + QG GLGL I Sbjct: 723 -GCITLGYKQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKL----NTFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 778 KSIVSQMGGEIGVDSTEGVGSCFWFTHP 805 >gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102] gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102] Length = 1373 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 12/238 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N KS+FLA+MSHE+RTP+ ++G +E+++ + +EY+ +I RS LL +I Sbjct: 790 NRLKSQFLANMSHEIRTPITGVIGMAELLQDMKLDS----EQREYVENIQRSANALLTVI 845 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVW 362 N+ILD S++E+GR ++ E SL ++++ ML A+ K++ + ++ V Sbjct: 846 NDILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMVVI 905 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIP 418 D +RQ++ NLL+N++KFT G V +V +I+D G GI E Sbjct: 906 GDPGRVRQIVTNLLTNSIKFTNQ-GHVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEVRK 964 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F QG + G GLGL I ++++ G+ + S L G +P ++ Sbjct: 965 KLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIPFSK 1022 >gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 862 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 136/250 (54%), Gaps = 9/250 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E K ++ K A+ N AK+ FL+SMSH++RTP+NAI+G S + + P E Sbjct: 330 EQARQKQALEDACKTAQIANDAKTNFLSSMSHDIRTPMNAIIGMSVIAQANLKAP---EK 386 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ + I+ S +HLL+LINE+LD+S+IE+G+ +L ISL +++ + + + + A EK Sbjct: 387 IQDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLISETISLPELIEDVMDVFRPLAAEK 446 Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RG 400 + E+ D +V D+ +RQV++NLLSNAVK+T GG V + + Sbjct: 447 HQELQVNADHVRHENVITDQNRLRQVLVNLLSNAVKYTPDGGCVGLWIREVPSFAKGRGQ 506 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + DNG G++E +P V F + + QG GLG+ I Q+I+ G +RS Sbjct: 507 YEFIVTDNGIGMSEEFLPHVFEPFARAKDPTINQVQGTGLGMAITQNIVRMMNGTIEVRS 566 Query: 461 KLREGVEVIA 470 +G I Sbjct: 567 NPGQGSRFIV 576 >gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 936 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 13/343 (3%) Query: 137 LTIYKSATLLIALSISALSNFMLPY-AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + L+I + LP + + +V + A + + A + Sbjct: 187 FILLFFNILVILGAFHLSKTLTLPINRLSSALNKLVKGQFSGAKLMKLPPEY--AALQKD 244 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 L + +H + I + + +E + + A E N KS+FLA+ Sbjct: 245 LLDLSERLEHHNEELIAGIEQSTEDIRRSMDSMEEKSAQLHIANREAMESNRLKSQFLAN 304 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHE+RTPLNAILG+++ ++ + + + Y+ I +S LL +I +ILD S+IE Sbjct: 305 ISHEVRTPLNAILGYTKTLQKDI----TDTQQRLYVDTIEQSTNSLLTIIGDILDFSKIE 360 Query: 316 AGRYELSESAISLIDIVRECIIMLQ--LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372 AG+ L + +L ++ + +L L +EK I++ + + D +RQ++ Sbjct: 361 AGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDLVPEFSQDVPEWFVGDSTRVRQIL 420 Query: 373 LNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G +V + I D G GIAE +I + F Q Sbjct: 421 TNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQIIDTGIGIAEHKINRLFKPFSQVDT 480 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ G+ + S G + Sbjct: 481 STTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGSTFRFTI 523 >gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] Length = 896 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 145/315 (46%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ ++ + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIPNLPNGLTDIQVSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V + IP + E T Sbjct: 749 ATVEDVIPAEVVEET 763 >gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] Length = 908 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 139/259 (53%), Gaps = 8/259 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++ + + ++E+ D +KRA+E KS FLA+MSHELRTPLN ++GF+ Sbjct: 260 QATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---- 315 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +T+ N T ++Y+ I RS +LL++IN++LD S++EAG+ L L D + E Sbjct: 316 RQTLKTPLNITQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEV 375 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 +++L A EK +E+ I P + D ++Q+I+NLL NA+KFT G + + + Sbjct: 376 VVLLAQSAHEKGLELTLSIQPEVPDNTIGDPLRLQQIIINLLGNAIKFTERGNIDIRIEL 435 Query: 394 GWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S + ++ D G GI+E + + +F Q +I G GLGL I Q ++ Sbjct: 436 RSLSTNRVNLEVQIHDTGIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNE 495 Query: 452 HGGQFLIRSKLREGVEVIA 470 GG+ + S++ +G Sbjct: 496 MGGEISLHSRMNQGSTFWF 514 >gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1] Length = 1268 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + +++AE N AKS FLA+MSHE+RTP+N +LG +++ T+ ++ +YI Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTL----DQRQADYI 575 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 + + + LL L+N+ILD S+IEAG+ EL SL D++++ ++ A++K +E+ Sbjct: 576 EKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVL 635 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ--YISIKD 407 + + + D ++QV++NL+ NA+KFT G + + SIKD Sbjct: 636 YDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKD 695 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q +I G GLGL I++ ++ GG+ + S+ G Sbjct: 696 TGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGST 755 Query: 468 VIA 470 Sbjct: 756 FSF 758 >gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662] gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662] Length = 1088 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 9/278 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + VK++ ++ + E + + A++ N AKS FLA MSH++ Sbjct: 654 IILAESRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMSHDI 713 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+G + + P E +E + I S HLL+LINEILD+S+IE G+ E Sbjct: 714 RTPMNAIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKGKIE 770 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L+E L +++ + + + A +K E+ + + + D +RQV++NL++NA Sbjct: 771 LTEEPFCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLITNA 830 Query: 380 VKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 VK+T GGR+ V V +GR +++DNG G+ + + F + + Sbjct: 831 VKYTQNGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRR 890 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 QG GLG+ IAQ I++ G S+ +G I L Sbjct: 891 VQGTGLGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 928 >gi|3851457|gb|AAC72284.1| Nik1p [Candida albicans] Length = 1081 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 956 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ ++ + V D Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515 >gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] Length = 983 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 10/250 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I + + + + RAEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 598 IITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEK 657 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E YI I + Q LL LI+++LD+++IEA + + S++ L ++ E +R Sbjct: 658 SE----YINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRI 713 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + D V + + Q+I+NLL+NA+KFT G++ + Y Sbjct: 714 TSPDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQK-GKITFGYKLQKEK-IYF 771 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + F + + QG GLGL I +SI+ GG+ + SK+ Sbjct: 772 YVTDTGCGIPAEKQDKIFERFIKL----NNFAQGTGLGLSICKSIVDAMGGEIGVDSKVG 827 Query: 464 EGVEVIAILP 473 G LP Sbjct: 828 NGSTFWFTLP 837 >gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 895 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 5/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K A E N AKS FLA+MSHE+RTP+N ILG +++ + +EY+ + S Q Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMAQLCLDTPLTA----EQREYLSLVMSSAQ 314 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL++IN+ILD SRIE+G+ ++ E + + ++ I A EK IE+ I P++ Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374 Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +RQ++ NLL NA+KFT G + I+D G GIA + Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + G GLGL I+ +++ GG+ + S+ G E LP Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVDSQPGAGSEFAFTLPLE 491 >gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 917 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAE-----------LEVAKSLSDETRKRAEEENLAKSR 251 + + + + + + E I + +E+ D RK A E + KS Sbjct: 229 LAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ +++ M P +Y+ I +S +LL +INEILD Sbjct: 289 FLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNTIEKSADNLLGIINEILDF 344 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQ 370 S+IEAG+ L +L D++++ + +L A K +E+ + +S+ D ++Q Sbjct: 345 SKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQ 404 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+SNA+KFT G + V IS++D G G++ ++ T+ +F Q Sbjct: 405 ILTNLVSNAIKFTRE-GTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQ 463 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I++ ++ G + + S EG + L Sbjct: 464 ADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDSTPGEGSQFWISL 509 >gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] Length = 861 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +++ + +E R RAE + AKS FLA+MSHE+RTP+N ++G +E++ + Sbjct: 309 ITDVKDTQRELEEARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLRESPL----T 364 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + Y+ I SG+ LL +IN+ILD S+IEA + +LS + L V E +++LQ A+ Sbjct: 365 DEQRLYVDTIRGSGEALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQPTAR 424 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGR-- 399 EK +E+ + D L V D +RQ++ NL+ NAVKFT G V V V + Sbjct: 425 EKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGNAVKFTNE-GHVLVRVLGLRHAHGAL 483 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+++D G G+ +I + F Q +G GLGL I + ++ G+ ++ Sbjct: 484 DVRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGLGLAITKRLVEMMEGEIWVK 543 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S+ +G +P Sbjct: 544 SEPGQGSCFGLRIPLAVAAPS 564 >gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] Length = 896 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 6/267 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + ++ ++++++ N KS FLA+MSHE+RTP+N I G + + Sbjct: 506 QISDQVYKQTEKLRLEKQKSDKANKIKSEFLANMSHEIRTPINGIKG----LHYLVLQQT 561 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + KEYI + LL ++N+ILD S+IEAG+ +L S + + + +++ Sbjct: 562 DMRKVKEYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTE 621 Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 K+I + S S++ D+ ++QV+LNLL+NA+KFT G++ +T+ + Sbjct: 622 LNNKDITLLIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQL 681 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+KDNG GIA+ + +F Q + G GLGL I + ++ GG+ S+ Sbjct: 682 RFSVKDNGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVSE 741 Query: 462 LREGVEVIAILPN-TRVLNFIPEDNHE 487 L G E LP + P+ HE Sbjct: 742 LNVGSEFYFTLPQGEFSTDEAPKTQHE 768 >gi|68477999|ref|XP_717003.1| hypothetical protein CaO19.5181 [Candida albicans SC5314] gi|68478134|ref|XP_716936.1| hypothetical protein CaO19.12648 [Candida albicans SC5314] gi|46438625|gb|EAK97953.1| hypothetical protein CaO19.12648 [Candida albicans SC5314] gi|46438696|gb|EAK98023.1| hypothetical protein CaO19.5181 [Candida albicans SC5314] Length = 1081 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 899 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 160/343 (46%), Gaps = 11/343 (3%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML-A 194 + +LI + ++ L F L V V + + I L Sbjct: 173 RAAVAAFIIVLIGVQLNLLFTFRLLKNVTEMVRAVAKIREGKLDTRLQGDLIGELDHLKR 232 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + ++ + + I ++ + + ++E+ D +KRA E + KS FLA Sbjct: 233 GINAMAASLSEYHNEMQQNIDQATSDLRETLEQIEIQNVELDIAKKRALEASRIKSEFLA 292 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLN ++GF+ + + + K+Y+ I RS +LL++IN+ILD S++ Sbjct: 293 NMSHELRTPLNGVIGFTRQLLKTPLH----DNQKDYLRTIERSASNLLSIINDILDFSKL 348 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG+ L +L D + E + +L A +K +E+ +ID + S+ D ++QVI Sbjct: 349 EAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVVEIDERVPDSLCGDVMRIQQVIT 408 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G V +++ + + + D G GIAE + P + +FGQ Sbjct: 409 NLMGNAIKFTDK-GSVRLSLDLADESAERVLLRAEVSDTGIGIAEEQQPMLFQAFGQADS 467 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I + ++ GQ S +G L Sbjct: 468 SVSRRFGGTGLGLVITKRLVNQMEGQIGFTSHQNQGSTFWFTL 510 >gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 981 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 15/371 (4%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L + L L + + A ++ L++ + + V S + AL+ Sbjct: 135 SLRFATLQLYVTPEYVHRTMKDNVVAAVMHMLALELVLVLGILLVVRRSLIVPLSALTAW 194 Query: 178 AIMSMHVLDISLAGMLAT---ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + D + L + + L + Sbjct: 195 VRRESPLYDYGTRIPKQADDELGELVDSMNGMLSEIEKRDRMLNDHSKHLEKLVAERTQE 254 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R AE+ + AK F+ASMSHELRTP+NAI+G E+ + +EY+ I Sbjct: 255 LEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKTELTV----KQREYLTII 310 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S + LL ++N+ILD+S+IEA + EL S +++ E + + R K +E+ I Sbjct: 311 RSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLDI 370 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410 + + +V D ++QV++NL++NA KFT G R+ V VG S S++D G Sbjct: 371 EADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRSQDVVQLEFSVRDTGL 430 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + +F Q + G GLGL IA+ ++ GG + S+ +G + Sbjct: 431 GIGEEARNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTITVASEPGKGSDFRF 490 Query: 471 I----LPNTRV 477 LP V Sbjct: 491 TGRFSLPVEAV 501 >gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1349 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 124/276 (44%), Gaps = 18/276 (6%) Query: 220 EKDDLIAELEVAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E L + K S+E + A N AK FLA+MSHE+RTP+N I+G + ++E Sbjct: 668 EVTVLAIQDITYKKRSEEALRYAAVERAANKAKGEFLANMSHEIRTPMNGIIGMASLLED 727 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + K+ + I S + LL +IN+ILD S+IEAG+ +L V + Sbjct: 728 TPLNN----EQKDLLQTISSSAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVT 783 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++ A++K ++I I + V D +RQV++NL NA+KFT+ G V V Sbjct: 784 ALMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLTGNAIKFTSK-GEVIVRALV 842 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I D G G+ + + ++ SF Q + G GLGL I++ + Sbjct: 843 DEEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRL 902 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR-----VLNFIP 482 GG+ SK EG + R V P Sbjct: 903 MGGKIGAESKEGEGSLFWFTVKMERPRNMDVAPPAP 938 >gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1397 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 135/268 (50%), Gaps = 12/268 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E ++ R AE+ N AKS FLA+MSHE+RTP+N ++G ++V++ ++ Sbjct: 688 VSERIRILKDLEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGY-- 745 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + I S LL +I +ILD S+IEAGR E+ ++ +S+ +V + ML+ A Sbjct: 746 --QMEMVDLIRESAFALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAA 803 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGR- 399 K +E+ +DP++ V D +RQV++NL +NA+KF++ GRV V Sbjct: 804 RKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHDQ 863 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I DNG G+ E + TSF QG + G GLGL I ++ GG Sbjct: 864 DTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSI 923 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484 +RS EG L + + ED Sbjct: 924 QVRSAPGEGSVFTVRLSFDLIPSSHMED 951 >gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis TXDOH] Length = 986 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 98/454 (21%), Positives = 182/454 (40%), Gaps = 35/454 (7%) Query: 31 MDFDREIITLH-VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL 89 + D ++ ++ + ++ +L VA G F W I L Sbjct: 310 PETDWTLLYVYSIRTMMYDVAARMCKILGVALFGFAFL-------WWGIVLVHRRVLTPS 362 Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 + + +G IG + L E Sbjct: 363 YVRALRLQESEQLNRTLIRTAPIGLALIGEADGTVLLRNKAMARYET------------G 410 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 S + L A+ P A + + + H + ++ A + + ++ Sbjct: 411 SSGEPLSQRLWQALAH--VPDEHAPARRRAIVGHEVALAGVNGAAGETYLLVNVAHVKYR 468 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 +L+ + I ++A+ DE R+ A++ N +KS FLA+MSHE+RTPLNA++G Sbjct: 469 GAQALLATVND----ITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIG 524 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 E+++ + + + + + + LL+++N++LDLS++EAG+ + Sbjct: 525 NLELMKRGPLA----DAQRRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCA 580 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR 388 ++R+ Q A K + + I P ++ + D +RQ++ NLL NA+KFT G Sbjct: 581 VLLRDVTATFQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGS- 639 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 VT+ + + D G GI+ + T+ + Q +I G GLGL + + + Sbjct: 640 --VTLFAAGDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRL 697 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 + GG+ RS EG E +P V +P Sbjct: 698 VNAMGGEIAARSVPGEGSEFRVGIPL-PVTADLP 730 >gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 2384 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 161/375 (42%), Gaps = 29/375 (7%) Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 G TP + + A ++ L++F V L+F + + + I+ Sbjct: 1551 LGEGTPLSIVVLPVLFEGEARAVIELASFRHFTDVNLAFL-----DQLTQGIGIVLNTIA 1605 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244 L + L K+N ++ + E+E ++ + EE Sbjct: 1606 ATMRTEQLLKQSQALAEQLQKTNAELEEKAHLLAEQKNEVETKNREVEQAKAALEEKAEQ 1665 Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FLA+MSHELRTPLN +L ++++ L+++ K Y IH SG L Sbjct: 1666 LSLTSKYKSEFLANMSHELRTPLNNLLILAQMLAENAESTLSSKQVK-YAETIHSSGTDL 1724 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-- 359 L LIN+ILDLS+IE+G+ ++ ++ ++ + A+ K +++ ++ +L Sbjct: 1725 LALINDILDLSKIESGKMDVEVGSVHFSELRDLSSRTFRHVAEGKGLDLSIELADNLPSE 1784 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIK 406 ++ D K ++QV+ NLLSNA+KFT G V + V + S+ Sbjct: 1785 TIITDAKRLQQVLKNLLSNALKFTEQ-GAVRLRVERATSGWSASHPVLNRVKSVIAFSVT 1843 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + + +F Q G GLGL I++ + GG+ ++S G Sbjct: 1844 DTGIGIPQDKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELTRLLGGEIRLQSAPGAGS 1903 Query: 467 EVIAILPNTRVLNFI 481 LP T V Sbjct: 1904 TFTLYLPQTYVAQVA 1918 >gi|150009333|ref|YP_001304076.1| putative signal transduction histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149937757|gb|ABR44454.1| putative signal transduction histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 942 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRAE NLAKS FL+ MSHE+RTP+N I+G S + N + K+ + + S + Sbjct: 547 KRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI---DNTDKIKDCLEKVIMSSK 603 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +++ + +A+ K I + L Sbjct: 604 HLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILASDLE 663 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 + D + QV+ NLLSNA+KFT G + + V T + D G GIAE Sbjct: 664 VQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGCGIAE 723 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S G LP Sbjct: 724 ENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTVDLPF 783 Query: 475 TRVLNF 480 ++ Sbjct: 784 GKIKES 789 >gi|149235444|ref|XP_001523600.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL YB-4239] gi|146452579|gb|EDK46835.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL YB-4239] Length = 1142 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 23/322 (7%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224 V+ + ++A L + + F IT + + E D L Sbjct: 405 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEALGEMDAL 464 Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++ E R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 465 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 520 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V + Sbjct: 521 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 580 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L ++A EKN+++ + D S + D +RQVILNL NA+KFT GRV V+V + Sbjct: 581 TLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GRVSVSVKKS 639 Query: 397 SGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + D G GI + ++ + +F Q + G GLGL I++ ++ Sbjct: 640 DKTAEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISRQLI 699 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG+ + S+ G Sbjct: 700 HLMGGEIWVTSEYGSGSNFNFT 721 >gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB] gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB] Length = 794 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 9/264 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + L +E + AE N+AKS FLA+MSHE+RTPLNAI G + Sbjct: 372 NTAQELAKHRLHLEQLVEERTEELLLAKDAAENANMAKSAFLANMSHEIRTPLNAIAGMA 431 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 I + P E + + + HLLN+IN IL+LS+IEAG++E+ ES I + I Sbjct: 432 HFIRRGGLSP----KQSEQLEKLEGASTHLLNIINAILELSKIEAGKFEIEESPIKVESI 487 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +L RA+ K+I++ +I+ + D ++Q +LN +NAVKFT G V + Sbjct: 488 LGNVLSLLHDRAEAKHIKLLCEIELLPKDLLGDATRLQQALLNYTTNAVKFTET-GSVTL 546 Query: 392 TVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V ++D G GIA +P + ++F Q + G GLGL I + Sbjct: 547 RVHPVDENAISTVLRFEVRDTGIGIAPEVLPKLFSAFEQADNSTTRKYGGTGLGLAITKK 606 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 + GG S L G Sbjct: 607 LAEMMGGDSGAESTLGRGSTFWFT 630 >gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] Length = 2349 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 138/293 (47%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1792 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1851 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + P Y+ I LL LIN Sbjct: 1852 KAKSIFLANISHDLRTPMTGVIGLSELLKATKLDP----KQDVYVESIRVCADTLLTLIN 1907 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK +E + +D + V D Sbjct: 1908 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPNLLVMGD 1967 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I + D G GI+E ++ + Sbjct: 1968 PVRLHQIFMNLLSNSYKFTPK-GSVTVQAIVEEDTPEQIRVTCKVADTGIGISEEQLVRL 2026 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2027 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2079 >gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1070 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 9/272 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E + + ++ AE N AKS FLA++SHE+RTPLN I+G ++ + Sbjct: 674 EDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSEV--- 730 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++YI S ++LL ++N++LD ++++AG+ E+ + SL D++ + + + Sbjct: 731 -PPELEDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRAL 789 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 A +K I + + DE +RQ++ NL+ NA+KFT G V + +G Sbjct: 790 AMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDT-GSVTLEAWPVGEQGDA 848 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI ++ V SF Q QG GLGLPI + ++ GG + Sbjct: 849 TRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRLVTLMGGNISV 908 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S EG + +LP + Sbjct: 909 ESMEGEGTTIFFVLPLRAAPPLQQVQTSAQPE 940 >gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 765 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 143/276 (51%), Gaps = 6/276 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ ++++ + Q +K+ + +T ++ N +KS FL +MSHELR Sbjct: 344 HLAVAIYQAQLYA-QVQEQKNTFEQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELR 402 Query: 262 TPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 TPL I+G S + + L + ++Y+ I SG+HLL++INEIL+ S +++G+Y Sbjct: 403 TPLTCIIGLSGTLLHWSQESTTLPLDKQQKYLQTIQNSGKHLLDMINEILEYSNLQSGKY 462 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLS 377 L+ SL + + I + A+ + I + I+ S +AD + ++Q++ +LL+ Sbjct: 463 VLAVREFSLTKVAKNVIQRVSDEAEHRRINLELDLQINQQQDSFYADPERVQQILYHLLN 522 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT G V + + W + ++D G GI E +IP + SF Q + + G Sbjct: 523 NALKFTPENGSVTLRI-WRENNHVSLEVEDTGIGIQEEKIPLLFESFQQLENSRRRMYGG 581 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL + + ++ HGG + S + +G I LP Sbjct: 582 TGLGLALTKQLVELHGGTIEVESIINQGSTFIIRLP 617 >gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 771 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AEE + K FLA+MSHE+RTPLNAI+GFS+++ + PL Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E+I I ++ LL LIN+ILDLSRIE+G S + L ++ + QL Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 E +E+ ++ + +D + QV N ++NAVKFTA G + + ++ I Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + + V F + QG GLGL I QSI+ G + S++ Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVG 750 Query: 464 EGVEVIAILP 473 G LP Sbjct: 751 VGSMFTISLP 760 >gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1090 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 35/297 (11%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K +K I E + A+ + ++ A+ N AKS FLASMSHELRTPLNA Sbjct: 552 ISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNA 611 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILGF++V+ + N +++ + I RSG+HLL LIN+IL++S+IEAGR ++ Sbjct: 612 ILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSF 668 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ ML L+AQEK +++ + P + + DE +RQV++NLL NA+KFT Sbjct: 669 DLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEE 728 Query: 386 GG---RVHVTVGWTSGR---------------------------GQYISIKDNGPGIAEG 415 GG RV V G ++D+GPGIA Sbjct: 729 GGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPE 788 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E+ + +FGQ + A++G GLGLPI++ + GG + S L +G + Sbjct: 789 EVDQLFAAFGQTETGRQ-AQEGTGLGLPISRKFVQLMGGNISVSSILGQGSLFAFSI 844 >gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 944 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V +V A I + + L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDVTGPIRNMVNA--VDRIRRGQLDSR----VEGHML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ ++ + V D Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHL 515 >gi|3955036|emb|CAA65047.1| putative sensor kinase [Synechocystis sp. PCC 6803] Length = 1138 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 134/313 (42%), Gaps = 23/313 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 A + I + + + ++ + EL ++ AE N AK Sbjct: 721 VWTADEIELLEAIAEQMG-IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKG 779 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHE+RTP+N ++G SE++ + + +Y+ I +SG+ LL +IN+ILD Sbjct: 780 EFLAMMSHEIRTPMNGVIGMSELLIMTDLNL----QQLDYVQTIRQSGETLLTIINDILD 835 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+IEA + L A L ++ + M A+ K++E+ IDP + D+ +R Sbjct: 836 FSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLR 895 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQYISIKDNGPGIA 413 Q++ NL+ NA+KFT G V +TV +++D G GI Sbjct: 896 QILSNLIGNALKFTEK-GEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIP 954 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q + G GLGL I+Q + GG + S+ G + Sbjct: 955 LDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCIL 1014 Query: 474 NTRVLNFIPEDNH 486 T + E + Sbjct: 1015 TTAQAPALAEADS 1027 >gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617] Length = 909 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 21/295 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D ++RA Sbjct: 227 GHMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ + N T ++Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ L L + E +++L A EK +E+ I + Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417 D M+Q+I+NLL NA+KFT G + + V + + I D G GI+E + Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q +I G GLGL I Q ++ GG+ S+L G + Sbjct: 462 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516 >gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] Length = 916 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 14/283 (4%) Query: 200 FTYITYHLFKSNVKIL----SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 T I L S ++L + + +E + K E N K++FLA+ Sbjct: 236 LTEINERLENSQEEMLKSIEQATEDMRRNMDSMEEKSAQLHIANKETSESNRLKTQFLAN 295 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTPLNAILG++++++ + + + YI I +S +LL +I +ILD S+IE Sbjct: 296 MSHEVRTPLNAILGYTQLLQKDKLDN----QQRLYINTIEQSTNNLLAIIGDILDFSKIE 351 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVI 372 AG+ L +S +++ +++ + +L + + + D +RQ++ Sbjct: 352 AGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEVANEVPEWLIGDAIRIRQIL 411 Query: 373 LNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G +V + + + D G GI E ++ ++ +F Q + Sbjct: 412 TNLIGNAIKFTHDGFVRTKVTLEQQRNGQPRLLVQVIDTGIGIPENKLNSLFKAFSQVNT 471 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ GG+ + S+ G + Sbjct: 472 STTRQFGGTGLGLVITKKLVEQMGGEIEVNSESGVGSNFRFRI 514 >gi|325921895|ref|ZP_08183706.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325547597|gb|EGD18640.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 718 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 10/302 (3%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + A A + L + + + + + ++ AE LA Sbjct: 1 MGVCAAIAAYRSARAQHALAQRLEEAEVARERLQQELQRQGELEQELLRAKQAAEAATLA 60 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K FLA+MSHE+RTPLN I+ E+I + ++ + S LL ++++I Sbjct: 61 KGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRDMLQTATGSSLQLLRIVDDI 116 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367 LD S++EA + EL + +L +++ + +LQ A+ + + I +I+PS+ V D Sbjct: 117 LDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRIGLEIEPSVRLLVRGDPIR 176 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTS 423 +RQV+ NL+ NA+KFT G V + + I+D G GIA+ + + S Sbjct: 177 LRQVLGNLIGNAIKFTER-GSVDIQLRRLGETRAQHLLRFQIRDTGIGIAQDQQARLFRS 235 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q + G GLGL I + I+ GG+ + S+ G +P +V+ + + Sbjct: 236 FAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATFWFEIPLLKVIGDLQQ 295 Query: 484 DN 485 + Sbjct: 296 NT 297 >gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] Length = 2418 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1832 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1891 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1892 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1947 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK + + +D V D Sbjct: 1948 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDLLVMGD 2007 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I + D G GI+E ++ + Sbjct: 2008 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2066 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2067 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2119 >gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 774 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 18/276 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L A+ + + R AE N AKS FLA+MSHE+RTPLN I+G ++++E + Sbjct: 376 IGQLVQAQEEARQARLAAEAANRAKSAFLANMSHEIRTPLNGIVGTAQLLEFTRLTG--- 432 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ DI S LL+L+N++LDLS+IEAG+ L L + I L+ AQ Sbjct: 433 -EQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGKITLESLDFRLRASIDGVIKSLKSLAQ 491 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K ++I +I S+ + D+ +Q++LNLL NAVKFT GG + V+V Sbjct: 492 SKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLGNAVKFTETGG-ITVSVRLKEQHNDQL 550 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I +KD G GI+ + + F Q ++ G GLGL I + ++ GGQ Sbjct: 551 LLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTKKYGGTGLGLAICKRLVTMMGGQLWAE 610 Query: 460 SKLREGVEVIAILP--------NTRVLNFIPEDNHE 487 S G P L+ P E Sbjct: 611 SVAGGGSTFHLAAPFSLCTQQDAECPLDAPPPAATE 646 >gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] Length = 878 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 18/305 (5%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A L T+L F I L +I++ + D+ L + + K Sbjct: 444 AVFLLTSLVFVFLICTLLLTIANRIITVEEIVDEKTQHLIDLNVQLKKA-------SETK 496 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLN I+G S+++E + NE K Y+ ++G +LL++IN+IL Sbjct: 497 SEFLANMSHEIRTPLNVIVGMSDLLEESPL----NEDQKHYVDISKKAGHNLLSIINDIL 552 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368 D+S+IEAG L ++ + L +V + M +L+A+EKN+E+ + S+ D + Sbjct: 553 DISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHSIFMGDPTRI 612 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 RQV+ NL+SN++KFT G + V V + D G GI +IP + F Sbjct: 613 RQVLSNLISNSLKFT-TDGSIRVEVMKNQTEMEGNLIFHVSDTGIGIPRDKIPQLFQPFT 671 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPE 483 Q I G GLGL I++ ++ G + S+L G LP R + E Sbjct: 672 QADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGSRFSFSLNLPWLRDVPAEGE 731 Query: 484 DNHES 488 E Sbjct: 732 HTAEE 736 >gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818] Length = 2374 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1883 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK +E + +D V D Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDLLVMGD 1999 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I + D G GI+E ++ + Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 834 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 10/264 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ ++ ++ AE +KS FLA+MSHE+RTP+NA++G SE+ T + Sbjct: 430 ITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMNAVIGLSELALDST----DP 485 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ I+ S + L+ ++N+ILDLS+IEA + + + +L +++ + L A Sbjct: 486 AEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQLSVEKIQFNLTELLDSIQRIFTLSAA 545 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 +IE D + + D +RQ++ NLL NA KFT GRV + V T Sbjct: 546 GCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGNAFKFTQK-GRVTLNVSKIENTTDST 604 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KDNG G+++G++ T+ F Q +I G GLGL I++++ GG + Sbjct: 605 TLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGLGLTISRNLAQLMGGDIKVE 664 Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483 S+ G L ++V P+ Sbjct: 665 SQAGAGSTFSVELTFSKVQVSDPQ 688 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ ++A++ ++ AE+ KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 862 VSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTP--- 918 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I +GQHLL +IN+ILD S+IEAG+ + + L ++ +L + + Sbjct: 919 -RQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTR 977 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K++E+ I + + D + Q+++N +NAVKFT G + + Sbjct: 978 AKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFT-ENGEIDIIARVKERSETEV 1036 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 Y +++D G GI + + SF Q + G GLGL I++ + GG+ + Sbjct: 1037 LLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVE 1096 Query: 460 SKLREGVEVIAI 471 S+ +G Sbjct: 1097 SEYGKGSTFWFT 1108 >gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223] gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223] Length = 733 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 134/279 (48%), Gaps = 11/279 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ + + Sbjct: 325 EIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDEL 384 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++++ ++ SG+H++ L+NEILD S+IE G++EL S L I+ + Sbjct: 385 TV----KQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIY 440 Query: 340 QLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 EK ++ + + D+ +RQ+I NLLSNAVKFT G V V + + Sbjct: 441 SSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQ-GFVSVGLSEENI 499 Query: 399 RGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +Y I ++D+G GI + + + F Q G GLGL I + I G Sbjct: 500 GDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGA 559 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++S++ +G + ++ ++ + K Y Sbjct: 560 VSVQSEVGQGTCFEVR--VKLAASEPIKEEYKPVKAKTY 596 >gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 807 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 732 VRDTGMGIPRNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787 Query: 465 GVEVIAILP 473 G P Sbjct: 788 GSCFWFTYP 796 >gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1059 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 12/294 (4%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + I + + + I+E + ++ ++R+ AE AKS FL MS Sbjct: 421 LWVLDIGKIMQRDASGAPARVTGVLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMS 480 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLNAI+G + + + P+ ++YI I R+ +HL+ IN +LDLS+IEAG Sbjct: 481 HEIRTPLNAIIGMAHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAG 536 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 + + + L ++V + +++++ RA+EK + + I SL D + QV+ NL+ Sbjct: 537 KLSMEQVGFDLRELVDDVLLLVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLV 596 Query: 377 SNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT G V + V W S+ D G GI++ + + F Q +I Sbjct: 597 DNAIKFTEA-GHVCIGVYLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSIS 655 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I++ I+ G ++S+ +G L +P + + Sbjct: 656 RRYGGSGLGLTISKKIVQLMQGDIRVKSQPGQGATFKFS--VQLSLPPLPLEEN 707 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 9/248 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ E K F++ +SHELRTPL +I G ++ + P ++E + + S Sbjct: 1116 ERKQIE---RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLL-PADSEQGRRLLEIATDS 1171 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ RIE+GR ++ + +L D++ + +++ A + +++ Sbjct: 1172 TERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSVSHPS- 1230 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 +W D + Q + NLLSNA+KF+ V + V G +++KDNG GI ++ Sbjct: 1231 -IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQQYGDELLVTVKDNGRGIPADKL 1288 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 ++ F Q + G GLGL I QSI+ HGG+ S L EG LP + Sbjct: 1289 DSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSNFYFTLPILPI 1348 Query: 478 LN--FIPE 483 +P+ Sbjct: 1349 SPNSELPD 1356 >gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] Length = 1209 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 135/257 (52%), Gaps = 12/257 (4%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++ ++ +L K AE+ N AKS FLA+MSHE+RTP+NA++G Sbjct: 470 ALAQAKLLEQEREIRQQLIEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGM 529 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + ++ + N +++ I SG+ LL+LIN+ILD S+IE+G+++L + Sbjct: 530 TGLLLDTHL----NTQQQQFTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQ 585 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 V EC+ ++ +A K +++ +I+P + + D +RQV++N+L+NAVKFT G + Sbjct: 586 CVEECLDLVAPQAFAKKLDLVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFT-TSGSI 644 Query: 390 HVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V V T SIKD G GI+ + + SF Q + +I G GLGL Sbjct: 645 QVRVSATVANQQQNKYTIQFSIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLA 704 Query: 444 IAQSIMANHGGQFLIRS 460 I + + GGQ + S Sbjct: 705 ICKRLTEMMGGQIWVES 721 >gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 919 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 15/289 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 L+ Q L + ++ + ++RAE + AKS FL+ +SHELRTP+NA++G Sbjct: 369 QARLALQESYRSLESRVKQRTTELQLAKERAEIASQAKSEFLSMISHELRTPMNAVIGAL 428 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ + ++ I S +L+ ++N+ILD+++IE+G+ +L + L + Sbjct: 429 ELLS----LADKSGEERDLIETASTSANNLIYILNDILDINKIESGKMQLEQQDFHLAGV 484 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT----AIG 386 + + I A + + + L V D +RQ++ NLLSNA+KFT Sbjct: 485 IADLIKSFSPVASRQGLRFAVQEALELPDWVEGDIVKVRQILSNLLSNAMKFTHSTQEQT 544 Query: 387 GRVH--VTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V +TVG + ++ DNG GI + + T F Q + G GLGL Sbjct: 545 GCVSLNITVGEQNDIVTRVRFTVTDNGIGIDKATQKRLFTPFVQAQRSTTRNYGGTGLGL 604 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 I + GG ++S+L +G + LP R + E E +++ Sbjct: 605 AICGKLTNLMGGSISLKSELGQGAQFCVELPFWRAHHH--EQTQELSEH 651 >gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 633 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 12/295 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + I + + E + A + +TR+ AE N AKS FLA MSHELRTP+N Sbjct: 223 LGDLSRHINNLAEGLNQASREQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E M E EY S +HLL +IN+ILD SRIE EL Sbjct: 283 VLGMLQLMETTEM----TEEQSEYAALASESTEHLLKVINDILDFSRIERAALELEHIPF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L D++ C Q AQ++ + + I V D +RQ+++NL+ NA+KFT Sbjct: 339 NLADLINSCAQAFQHSAQQRGLALQLSIPQGMDALRVQGDPTRIRQILVNLIGNALKFT- 397 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V V W + + +++D+G GI+ + + +F Q +I G GL Sbjct: 398 ENGSVSVEPHWQTLDHDLVWFTCTVRDSGIGISADRLELMFDAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GLPIA+++ GG +S+ G +P + +P + T K A Sbjct: 458 GLPIARTLAERMGGTLRAQSEESRGSVFTLEIPLAIDQHSVPAVAAD-TDGKASA 511 >gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1967 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 166/401 (41%), Gaps = 25/401 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R +++ + G ++ L T++ ++ + T I + ++ ++ M A+ Sbjct: 1119 RNIVVLPVLFEGEVKAVIELASFHTFSEVHMGFLEQLTESIGIVLNTIAANMRTEALLKQ 1178 Query: 167 FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L + + + A L + L +N ++ + Sbjct: 1179 SQALTDELRKQQEELTETNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAKLLSEQ 1238 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ + EE + KS FLA+MSHELRTPLN++L S+ + Sbjct: 1239 KTEVERKNGEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDN 1298 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L + E+ IH SG LL LIN+ILDLS+IE+G + + D+ Sbjct: 1299 VDGNLTS-RQVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDR 1357 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + A +K +E + SL + D K ++QV+ NLLSNA KFT G V + +G Sbjct: 1358 TFRQVADKKGLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFT-ESGSVSLHIGLA 1416 Query: 397 SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G ++ D G GI + + + +F Q + G GLGL Sbjct: 1417 KGGWSPDHAMLSSAPSVVAFTVADTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1476 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I++ I GG+ + S + G LP + PE+ Sbjct: 1477 ISREIARLLGGEIRLESDVGRGSAFTLYLPLAFMAERPPEE 1517 >gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 720 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 136/271 (50%), Gaps = 10/271 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E +A+ + AE N AKS FLA+MSHE+RTPL ILGF+E+I + + + Sbjct: 325 VTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGVILGFAEIIGTQDL---DE 381 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y IHR+G L +I++ILDLS+IEAG++E+ +S + L +++E + M +A Sbjct: 382 SERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPVKLKKLLQEVLTMFFDQAS 441 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 KNI + ++ + +D +RQV++NL+ NA+KFT G V V+ + Sbjct: 442 RKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMK-GSVKVSCRAEQVTATRK 500 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-I 458 SI+D G G+ + + + F Q G GLGL +++++ GG + Sbjct: 501 KIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLGLALSRNLARALGGDVSIV 560 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 R + R+G V ES Sbjct: 561 RCEPRQGCTFEFSFQAEDVSELSVAGQAESA 591 >gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97] Length = 2408 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVEANHNVKLKEDAA 1883 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK +E + +D V D Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDLLVMGD 1999 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I + D G GI+E ++ + Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria maculans] Length = 1313 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E ++ L++ A+E + KS LA+ SHELRTP+ ++G SE++ NE Sbjct: 705 KENSRLLANTA--AAKEASRMKSNLLANTSHELRTPIAGVIGMSELL----FDMDLNEEQ 758 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 KE +IHRS LL +IN+ILD S++E+GR ++ E SL ++R+ M+ AQ K Sbjct: 759 KECTENIHRSASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKG 818 Query: 348 IEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 + I + V D +RQ+++N+L+N++KFT++G ++ V + + Sbjct: 819 LAYQSFIQDEVEMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTV 878 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI E + F Q + G GLGL I+++++ GQ + SK Sbjct: 879 NFTVSDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSK 938 Query: 462 LREGVEVIAILPNTRVL---NFIPEDNHES 488 L +G +P ++V + P N ES Sbjct: 939 LGQGTTATFWIPFSKVPCANDGSPLVNLES 968 >gi|3243089|gb|AAC23929.1| histidine kinase [Candida albicans] Length = 1081 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp. carotovorum] Length = 933 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + + +++L A EK +E+ I + Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + + +D G GIAE + Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLEVQIRDTGIGIAELQQS 462 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 520 >gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1526 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 15/312 (4%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 +VV L + + +L +G ++ + + + L+ Sbjct: 775 MVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMELLSQLANQIGIALTQA-----ALLERER 829 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ RK AE+ AKS FLA+MSHE+RTP+NA+LG + ++ + N ++ Sbjct: 830 KRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPL----NAEQRD 885 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I SG LL LIN+ILD S++EAG EL L + E + A K +E Sbjct: 886 FVETIRISGDALLTLINDILDFSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLE 945 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404 + + P + + D +RQ++ NL+SNA+KFT G V + +S Sbjct: 946 LAVLMPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQ-GEVVIQAEVLQETATHAHLKLS 1004 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + F Q + G GLGL I + + GG ++S+ + Sbjct: 1005 VRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQ 1064 Query: 465 GVEVIAILPNTR 476 G L R Sbjct: 1065 GSTFSVELTLER 1076 >gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 731 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 140/321 (43%), Gaps = 16/321 (4%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL- 215 + L V P+++A M ++ +++ + + + +K+ Sbjct: 266 YDLVLNVEAVIVPIMLACVMLGYMLINRF------LISPIIVIARRVDETMEGGEIKVRY 319 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E LI +E + +A+ AKS FLA +SHE+RTP+N +LG +++++ Sbjct: 320 QSEDEIKYLIDSFNQKTVFLEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQ 379 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 M + ++Y+ + SG+H++ L+NEILD S++E G EL L ++ Sbjct: 380 KTEM----TDEQRKYLKTLIDSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSI 435 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ D P D+ +RQ++ NLL+NAVKFT+ G V V+ Sbjct: 436 NSVYNTLCCEKGLQFKVYSDVPIERWYRFDKARLRQILFNLLNNAVKFTSR-GYVEVSFT 494 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + ++D G GI + V F Q + G GLGL I + Sbjct: 495 EEIIDDQTYLRLRVRDTGIGIPKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCEL 554 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG+ + S++ G Sbjct: 555 MGGKIQLTSEVGIGSCFEISF 575 >gi|207742567|ref|YP_002258959.1| virulence regulator vsrb protein [Ralstonia solanacearum IPO1609] gi|206593960|emb|CAQ60887.1| virulence regulator vsrb protein [Ralstonia solanacearum IPO1609] Length = 525 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69 + + P + LGL + ++ D L I VL V + ++ Sbjct: 29 LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 88 Query: 70 PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + G+ W Sbjct: 89 LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++A Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L ++F ++ + V+ + + E L A+ DE ++RA Sbjct: 207 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +ET + + Q + L Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 315 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 492 Query: 485 NHESTQYK 492 ++ K Sbjct: 493 AQPRSEQK 500 >gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 682 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 148/273 (54%), Gaps = 9/273 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + I Y ++ + I+ I + + + +R+ AE N +K+ FLASMSH+L Sbjct: 403 SLIHYRGNRAVMYIMRD-------ITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDL 455 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAI+G+S+++ E++G L NE +Y +I SG+ LLN+IN+IL++S+IEAG+ + Sbjct: 456 RTPLNAIIGYSDLLLTESVGDL-NEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQ 514 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L S + +I++E +++ + Q E+ I+ + ++AD + ++ NL+ NA+ Sbjct: 515 LRPSENDIQEILKEVNELVKTKVQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAI 574 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 K + ++ + + T + I +K+ G GI + + T F Q I +G GL Sbjct: 575 KHSPKNEKIFINIT-TKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGL 633 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GL I + + H G+ I S L E I +P Sbjct: 634 GLAIVKHYVHLHNGKIWIESVLGEETSFIFTIP 666 >gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp. carotovorum] Length = 929 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 21/298 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 226 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 285 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGLIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 341 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + + +++L A EK +E+ I + Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISI--KDNGPGIAEGEIP 418 D ++Q+I NLL NA+KFT G + V + + +D G GIAE + Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDTGIGIAELQQS 461 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 462 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 519 >gi|189909957|ref|YP_001961512.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774633|gb|ABZ92934.1| Sensor and regulator protein of a two component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 912 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 11/262 (4%) Query: 228 LEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + E R E+ N KS FLA+MSHE+RTP+N +LG ++E + Sbjct: 511 KEKSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNVDI----E 566 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+Y+ + +S LL +IN+ILD+S++E + E+ + ++ + R+ ++ Q +K Sbjct: 567 QKDYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDK 626 Query: 347 NIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 N+++ + + + DE +RQV+ NL+SNA+KFT G + + V Sbjct: 627 NLKLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPS-GIITLAVKLDPSRNFIEF 685 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI+E I + F Q A +G GLGL I++ ++ GG+ + S L Sbjct: 686 CVHDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILN 745 Query: 464 EGVEVIAILPNTRVLNFIPEDN 485 G +P +V IPE + Sbjct: 746 IGSTFKFTIPFHQV--AIPEQS 765 >gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 1021 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 130/265 (49%), Gaps = 10/265 (3%) Query: 224 LIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ +A + R AE N AK FLA MSHELRTPL A+LG+++++ P Sbjct: 756 LVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDP 815 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E + I R+ + L LI ++LD+SRI G+ L + A+ L +V+ + +++ Sbjct: 816 AIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRP 872 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 RA++K + + + V D ++QV NLL NAVKFT GGRV V V Sbjct: 873 RAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEW 931 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + IKD+G GI +P + F Q + G+GLGL I + ++ HGG+ S Sbjct: 932 RVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESA 991 Query: 462 -LREGVEVIAILPNTRVLNFIPEDN 485 L G LP V +PE Sbjct: 992 GLGHGSTFTVRLP---VPALLPEPE 1013 >gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] Length = 810 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 143/285 (50%), Gaps = 17/285 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + + LIA+ E K AE+ N AKS FL+ MSHE+RTP+NAI+G + Sbjct: 263 DVTELREMQRKLIAQTEALKDALS----VAEQANRAKSDFLSRMSHEIRTPMNAIIGMTT 318 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + + ++ + I S +HL+ LIN++LD+S+I+AG+ ++S +L IV Sbjct: 319 IAAAYI---EDRKRVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLETIV 375 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 ++ +A++K + + +++V D + Q++LNLLSNAVKFT GG V + Sbjct: 376 ESITSIIYPQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGTVRL 435 Query: 392 TVG--WTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + W +S + D G G+++ + + F Q + G GLG+PI ++ Sbjct: 436 RIRQMWRRAGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYGGTGLGMPITKN 495 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + GG ++SK +G L +PE +E + K Sbjct: 496 LATLMGGTISVKSKPDQGTTFTVEL-----DFDLPEQENEVPEQK 535 >gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 864 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 147/259 (56%), Gaps = 7/259 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L ++ +L + + + + AE+ N AKS FLASMSHELRTPLNAILG+ + Sbjct: 371 QQLGVAVQQGELFKQTQNQAEELELAKIAAEKANHAKSEFLASMSHELRTPLNAILGYVQ 430 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + ++ + I+ SG+HLL LIN++L++S+IEAG+ L E+ L ++ Sbjct: 431 LMLR---STSLSSDHRNNLQTINDSGEHLLGLINDVLEMSKIEAGQIVLKETDFDLYHLL 487 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E +LQL+A K + + D ++ + DEK +RQV++N++ NA+KFT GRV V Sbjct: 488 DELETLLQLKATIKQLSLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEK-GRVTV 546 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V W G + +++D G GI + E+ + + F Q + S +G GLGLPI+ + Sbjct: 547 KV-WCEGHRLFFAVEDTGQGIEKEELEQLFSPFVQAKAGVNSG-EGTGLGLPISSKFINL 604 Query: 452 HGGQFLIRSKLREGVEVIA 470 GG+ ++ S + EG Sbjct: 605 MGGKIMVNSVVTEGTTFTF 623 >gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222] gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222] Length = 1462 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + D R++AE AKS+FLA++SHE+RTP++ ILG E+++ + + Sbjct: 698 ITLLKKQQQALDNARQKAERATAAKSQFLATISHEVRTPISGILGLLELMQEHQL----S 753 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E G +++S ++LL+++N++LD S+IEAG+ +L+ + I L ++ + + AQ Sbjct: 754 EELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQ 813 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 +K + DP+L+ ++AD+ + Q++ N L+NA+KFT G + V + Sbjct: 814 QKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQK 873 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D G GI + ++ F Q G GLGL IA ++ G + S Sbjct: 874 VSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSS 933 Query: 461 KLREGV--EVIAILP 473 + +G V LP Sbjct: 934 EEGKGSHFTVTVTLP 948 >gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] Length = 1303 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 170/392 (43%), Gaps = 41/392 (10%) Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 +++ + G + L +T +L + T + ++I+A++ A+ Sbjct: 743 APATHVIVLPILFEGQVQGAIELASFSGFTDTHLAFFDQFTENLGVTINAINANSRTEAL 802 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 LA L L +SN ++ A Sbjct: 803 LA-------------------ESQRLAQQLQERSDELQRQQAELRRSNAELEEKAALLAK 843 Query: 224 LIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 +E+ ++ R+ EE + KS FLA+MSHELRTPLN++L ++++ Sbjct: 844 QNRAIEIQNFQIEQARRTLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLVLAKLLSE 903 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G L E+ IH SG LL LIN+ILDLS++EAG+ E+ ++ +V Sbjct: 904 NPEGNLT-PKQVEFAKTIHDSGTDLLQLINDILDLSKVEAGKMEVHPQPLAFTKLVDYVD 962 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + A +K ++ ++ P + V + DE+ ++QV+ NLLSNAVKFT+ GRV +T+ Sbjct: 963 ATFRPLAVDKGLDFAVEVSPQVPEVLFTDEQRLQQVLRNLLSNAVKFTSE-GRVRLTIAP 1021 Query: 396 TSGRGQY------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + D G GI+E ++ + +F Q G GLGL Sbjct: 1022 AEGVEFTAPALREAPLVIGFEVSDTGIGISEDKLQVIFEAFQQADGTTSRRYGGTGLGLS 1081 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I+++I GG+ +S++ +G + LP Sbjct: 1082 ISRNIAHLLGGEIHAQSRVGKGSKFTLYLPVQ 1113 >gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] Length = 763 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 19/341 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + + L++ LS ML L+ P+ + ++ L+ Sbjct: 143 VQFTIMWTVLAVVGLSAVMLVLLNMLALQPL------------KTIHDRMSDALSGVQGQ 190 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + ++ + + +D E + ++ + + A+ N AKS FLA+MSHE Sbjct: 191 VRKLPWYASREFWALNFSVGVLEDTFVERDEREAALERACEDADIANQAKSDFLANMSHE 250 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N ++G +E+I + +E + Y I +SG LL +IN+IL+ S+IEAG+ Sbjct: 251 IRTPMNGVIGMAELIMETDL----DEDQQIYAETISKSGTALLTIINDILNFSKIEAGKV 306 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378 EL+ + +L+ + + + +L RA K +EI + DP+L + D +RQVI N++ N Sbjct: 307 ELNLAPFNLLTAIEDVVTLLSPRANAKGVEIILRYDPNLPEFFEGDVGRVRQVITNIIGN 366 Query: 379 AVKFTAIG-GRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 AVKFT +G V V+ G S I + D G GI + V ++F Q + + Sbjct: 367 AVKFTDVGYVHVDVSGGKNSENYSLTIKVADTGIGIPANRLEAVFSAFEQVDSGATRSFE 426 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I+ ++A GG+ + SK EG LP R Sbjct: 427 GTGLGLAISARLLALMGGEVAVASKAGEGSIFTVQLPLPRA 467 >gi|332531837|ref|ZP_08407722.1| sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332038813|gb|EGI75255.1| sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 1046 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 10/307 (3%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + L + + S + IS T ++ L+ N + E L +++E Sbjct: 290 LTLLLKDMNSEKPVTISNTSQNQTEIASVIKAANALYLKNKQTKELLNETRVLNSQMEAM 349 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ ++ N K F+A+MSHELRTP+N ILG ++++ + K Y Sbjct: 350 NADLTSAMEQTDKANKTKIDFVANMSHELRTPMNGILGMLQLLQSSEL----PSRQKHYA 405 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 S Q+LL ++N ILD S++E+ + +L + +L IV + A++K + + Sbjct: 406 DKAFSSAQNLLQILNNILDFSKLESEKVQLEQIPFTLHTIVSNVQNLFSTNAKQKGLLLN 465 Query: 352 QK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 + + D + Q+I N + NA+KFT G + + + TS SIK Sbjct: 466 FILHVDAGLELIGDPMHLSQIINNCVGNAIKFT-EHGEISLIIEATSQHEKTINLRFSIK 524 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G+ E + + SF QG + G GLGL I++ + GG +RS + +G Sbjct: 525 DTGIGMTEEQSKIIFQSFSQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQVRSTINQGS 584 Query: 467 EVIAILP 473 E LP Sbjct: 585 EFFFTLP 591 >gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 784 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 15/278 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E+E R RA+E + AKS FLA+MSHE+RTP+ Sbjct: 266 RGSNRDITDRKVAENRLQEFAVEVETQNLELARARNRAQEASKAKSTFLANMSHEIRTPM 325 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGF++V+E P ++ I RSG HLL LIN+ILD+S+IEAG+ + S Sbjct: 326 NAILGFAQVLEQ---DPDLTPRQAGHLKTITRSGNHLLRLINDILDMSKIEAGQVQSSPE 382 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 L+D++ + +M RA+ K ++ + D L ++ AD+ +RQ+++NLL NAVKFT Sbjct: 383 DFGLVDMLEDMGLMFSSRAEAKGLQFILERDRHLPGNIRADQGMLRQIMVNLLGNAVKFT 442 Query: 384 AIGGRV-HVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 + GG V G I ++D+GPGI E + + F Q I Sbjct: 443 SSGGVACRVRTEPAQDTGEKDDSRLRLTIEVEDSGPGIQEIDQQKLFEPFQQAEEGI--K 500 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E G GLGL I++S GG + S G + Sbjct: 501 EGGTGLGLAISRSFARLMGGDIEVSSTKDRGSLFRVHI 538 >gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36] gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36] Length = 742 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 10/338 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 ++ + +S + + I ++ L+ ++ + F ++ ++ Sbjct: 166 LVVFTILLVSITCIYGLIKRSIIARLNDLNRHISCIATGDYDTFINNNRITNNTDDEMSD 225 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A L +L+ + + + A + N AKS FLA+MSHE+RTPLN I+G +E+++ Sbjct: 226 SFAHLAVLQTQLKQNIATITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKD 285 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P+ K+Y+ I S Q LL LIN++LDLS+IE+G +S ++ +++ + Sbjct: 286 SPLSPI----QKDYLMTIDSSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTA 341 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ ++AQEKNIE+ +IDP L V DE +RQV++NL SNAVKFTA G + + Sbjct: 342 SLIAVKAQEKNIELDIQIDPELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSK 401 Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 S+KD G GI G+ + +F Q G GLGL I+ I++ Sbjct: 402 VVDADHIALSFSVKDTGIGIESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLM 461 Query: 453 GGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHES 488 GG I S +G + + ++ P H++ Sbjct: 462 GGYIAITSIKGQGSDFHFTITVGVEKIQPKQPVSPHQA 499 >gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01] gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01] Length = 987 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 22/370 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L+ A +E RK+AE+ Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GIA+ T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQRTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q + G GLGL I++ I+ GG + S+ G +P P Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLE---ESEPI 698 Query: 484 DNHESTQYKC 493 + +C Sbjct: 699 ETGTVATARC 708 >gi|296422839|ref|XP_002840966.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637193|emb|CAZ85157.1| unnamed protein product [Tuber melanosporum] Length = 1164 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 677 EMDALKTKINQMVFNLRDSIQKNTAARETAELANRTKSEFLANMSHEIRTPMNGIIGMTQ 736 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILD+S+IEA R + E SL V Sbjct: 737 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDISKIEANRMVMEEIPFSLRGTV 792 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A E+ +++ +D + V D +RQVILNL+ NA+KFT G V + Sbjct: 793 FNALKTLAVKANERFLDLVYCVDNVVPDHVVGDSFRLRQVILNLVGNAIKFT-ESGEVKL 851 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ S+ D G GI ++ + +F Q + G GLGL I Sbjct: 852 TIRQHDQSRCSDKEYCFEFSVSDTGIGIQSDKLDLIFDTFCQADGSTTRKFGGTGLGLSI 911 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG ++S+ +G Sbjct: 912 SKKLVNLMGGDVWVKSEYGQGSTFYFT 938 >gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] Length = 2406 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E E+ Sbjct: 1824 MGISLANAFLFQEVRKVSAANAAMVEAQKRALVQAREAEHKAKIAEVEANHNVKLKEDAA 1883 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1884 KAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQDVYVESIRVCADTLLTLIN 1939 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S I+L + E + L+ +EK + + +D V D Sbjct: 1940 DILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDLLVMGD 1999 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I + D G GI+E ++ + Sbjct: 2000 PVRLHQIFMNLLSNSYKFTPA-GSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLVRL 2058 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2059 FRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 11/266 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + L ++ + + R A+ + AKS FLA+MSHE+RTP+NA++G Sbjct: 554 QAEEELNRYRLHLEELVKTRTAELEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMI 613 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 + M P ++Y+ + LL +I++ILD S++EAG+ EL + L ++ Sbjct: 614 HLTLKTEMSP----KQRDYLRKAGFAADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEV 669 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + ++ ++A EK +E KI P + + D + Q+++NL +NAVKFT G + Sbjct: 670 LDTVTSIVGIKAHEKGLEFLLKIAPEVPAQLIGDPLRLGQILINLCNNAVKFTGQ-GEIF 728 Query: 391 V-----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V + S++DNG G+ ++ + T F Q + G GLGL I+ Sbjct: 729 VFIEQLDCRENNRVMLRFSVRDNGIGMTPEQLDKLFTPFTQADASSTRRFGGTGLGLAIS 788 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ S +G Sbjct: 789 KQLVLLMGGEIGAESIPDKGSVFFFT 814 >gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] Length = 534 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 2/257 (0%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + L EL AKS + + +R + + K F +SHELRTPL I G++E+++ T Sbjct: 278 VDNAMLFDELSQAKSELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGT 337 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +GP+N+E ++ + I S L ++ + DLS + + +Y + +SL +++ E + Sbjct: 338 LGPVNDE-QRDRLSRIDASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRG 396 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A K ++I + +L + AD ++QV+LN+L+NA+K+T GG++ ++V Sbjct: 397 IDFLADLKKLKITLDVPLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISV-RDEC 455 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I+++D G GI + +I + + F + +G GLGL I++ I+ +HGG+ Sbjct: 456 DHLLIAVRDTGIGIPKEDIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWA 515 Query: 459 RSKLREGVEVIAILPNT 475 S+ +G LP Sbjct: 516 DSEPGKGSTFFISLPKQ 532 >gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 896 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 19/309 (6%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 Q ++ LA ++ + I ++S A + ++ Sbjct: 464 QPVLKSSWFIYWLAQIVGMLFVWLLIIF---------LISVTATNIRIREQVAKQTLTLR 514 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + +++A+E + KS+FLA+MSHE+RTP+N I G + + + + K YI Sbjct: 515 QEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQ----QDWQQAKGYIEQADG 570 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + LL ++N++LD S++EAG+ EL + ++L + + + ++Q + K++ + + D Sbjct: 571 ALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEYDS 630 Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 + D ++Q++LNLL+NAVKFTA G + + + W S + Y S+ D G GI+ Sbjct: 631 DAHLILNTDPIRLKQILLNLLNNAVKFTAK-GCITLKI-WQSSKMTYFSVNDTGIGISSA 688 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q + G GLGL I + ++ GG ++S G LP Sbjct: 689 AQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP-- 746 Query: 476 RVLNFIPED 484 V + +P+ Sbjct: 747 -VHSSLPKA 754 >gi|300864283|ref|ZP_07109163.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337748|emb|CBN54309.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 942 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 103/376 (27%), Positives = 176/376 (46%), Gaps = 29/376 (7%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 GL W ++ V + + T ++ LL +++ + F + A +++ + ++ +++ Sbjct: 333 GLDWLIVVAVPETDFMEQINTNTQTTILLCLGALTLATIFGILTARWITNPILHLSAASR 392 Query: 178 AIMSMHVLDISLAGMLATALSF---FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 AI S + + + F + L +S + +E L +E + Sbjct: 393 AIASGDLDNNVEIKGIKELEVLGQSFNLMAQQLRESFKALEKTNSE---LEIRVEERTAQ 449 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E +K A+ N AK+ FLA+MSHELRTPLN ILG++++++ E I + Sbjct: 450 LTEAKKNADAANQAKTEFLANMSHELRTPLNGILGYAQILQRSKTMA---PKELEGIDIM 506 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H+ G HLL LIN+ILDL++IEA + EL ++ + ++RA++K+I + Sbjct: 507 HQCGSHLLTLINDILDLAKIEAQKLELYPKDFHFPSFLQGVAEISRIRAEQKSITFVYQP 566 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------------- 398 L++ + ADEK +RQV+LNLL NA+KFT G V V + Sbjct: 567 SSELATGIHADEKRLRQVLLNLLGNAIKFTDS-GAVTFKVEYLEVVTNEGVQNNKQKPLS 625 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I+D G G+ ++ + F Q K +G GLGL I+Q I+ G + Sbjct: 626 RIHKIRFQIEDTGVGMTPDQLDKIFLPFEQVGN-TKRQAEGTGLGLAISQKILQMMGSKI 684 Query: 457 LIRSKLREGVEVIAIL 472 ++S+L G L Sbjct: 685 QVKSQLGAGSVFWLDL 700 >gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 931 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T +Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 N+IN++LD S++EAG+ L + SL + + + +++L A EK +E+ I + Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEI 417 D ++Q+I NLL NA+KFT G + + V + I+D G GIAE + Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQ-GNIDIRVEKRRQELHQVQLEVQIRDTGIGIAELQQ 461 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPN 474 + +F Q +I G GLGL I Q ++ GG +S+L +G LP Sbjct: 462 SQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPL 520 >gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061] gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061] Length = 593 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 8/268 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V ++S + D+ + V + +++E R + + F+A++SHELRTP+ + Sbjct: 330 RTWVLLMSPLYNQQDVRGAVAVLRDMTEERR-----LDKLRKDFIANVSHELRTPIAMLQ 384 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I + G + E KE I+ + L+N++LDL+R+EAG L+ + Sbjct: 385 GYSEAIVDDIAG--SEEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDT 442 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + A+EK +++ I D + QV NL+ NA++ T GG Sbjct: 443 EELTEKIYRKFLGIAKEKQVDLTYDIQVDEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGE 502 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 VH +V + +KD+G GI E ++P + F + A G GLGL I ++I Sbjct: 503 VHFSVQSVESG-LKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNI 561 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 + H G SK G +P + Sbjct: 562 VEAHQGSIHAHSKAGTGTHFTFYIPRKK 589 >gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 850 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 143/335 (42%), Gaps = 13/335 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVAL-----STQAIMSMHVLDISLAGMLATALSFF 200 A +++ ++P A S VVA A + A L Sbjct: 107 TFAWALNRNQAILVPLADDRSLLLHVVATRSRIRGMFAGILPGSSHSPDAATLNAVSVIM 166 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + + + + L ++ R++AE + AKS FLA+MSHE+ Sbjct: 167 HTCAHSLESTELYSM-VRDTLASLEQRVQERTRDLAAAREQAESASRAKSDFLANMSHEI 225 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN I+G ++++ G LN +Y+G I S L+ +I +ILD S+IEAG+ E Sbjct: 226 RTPLNGIMGMTDLLL---GGGLNQTQQHQYLGAIKGSADCLMGVIGDILDFSKIEAGKVE 282 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L SL V + + L RA EK +E+ + + D +RQV++NL+ NA Sbjct: 283 LDPVPFSLRTFVGQAVRSLSARAAEKGVELVCDPREDVIDPLIGDCGKLRQVLVNLVGNA 342 Query: 380 VKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KF+ G V + S+ D G GIA + + F Q + Sbjct: 343 IKFSDGGEVVVAVETAAVEGNEVLLRFSVSDQGCGIAPEALDRIFNVFEQADSSTTKRFG 402 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ I+ GG + S EG Sbjct: 403 GTGLGLAISRRIVQLMGGDIRVESAPGEGSTFYFT 437 >gi|323495155|ref|ZP_08100240.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323310595|gb|EGA63774.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 810 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 10/308 (3%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 V+V + +M + L A++ ++ ++ + E LI Sbjct: 274 AVIVPIMLACVMMGYFLINRFLIAPIIAIARSADMSKQGGSIDI-RYNSHDEIKYLIDSF 332 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + + +A+ AKS FLA++SHE+RTP+N +LG +++++ + NE + Sbjct: 333 NQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILQRTDL----NEEQR 388 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ ++ SG+H++ L+NEILD S++E G EL + L I+ + EK + Sbjct: 389 KHLKTLYESGEHMMTLLNEILDFSKVEQGHLELEYTPFPLESIIGSVNSVYYTLCAEKGL 448 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404 + + P+ D+ +RQ++ NLL+NAVKFT+ G V V G+ I Sbjct: 449 QFKVYSEVPTTRWYRGDKARLRQILFNLLNNAVKFTSR-GYVEVYFKEQQRHGRNYLLIR 507 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GIA+ V F Q + G GLGL I + + G+ + S+L Sbjct: 508 VRDTGIGIAKDAQQKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMEGEVKLASELGI 567 Query: 465 GVEVIAIL 472 G L Sbjct: 568 GSSFEVAL 575 >gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 810 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ + +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + +V F + + QG GLGL I Sbjct: 723 -GCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 778 KSIVSQMGGEIGVDSTEGVGSCFWFTHP 805 >gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 1127 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 28/382 (7%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R +L A G +L L + + + A I ++ + + Sbjct: 317 RHLVLAPARADGAVNAVLELGFLHAPDERLMALLEEAGPAIGTALRSARYRAQLQNMLEE 376 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 L Q + L + L +S ++ QAE + + Sbjct: 377 TQRQAEELQVQ------------SEELRVSNEELEEQGRALKESQTRLEQQQAELEQTNS 424 Query: 227 ELEVAKSLSDETR--------------KRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +LE L + R + E+ + KS FLA+MSHELRTPLN++L S+ Sbjct: 425 QLEEQAQLLETQRDDLERGASALTLKARELEQASQYKSDFLANMSHELRTPLNSLLILSK 484 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ G L+ E Y I SG LL LIN+ILDLS+IEAG + A+S+ + Sbjct: 485 LLADNPEGTLS-EDQVNYARTIQSSGNDLLALINDILDLSKIEAGHIQARPEAVSMQRLT 543 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + Q A ++ + ++D + D + + Q++ NLLSNA KFT G+V ++ Sbjct: 544 EDVRQLFQPVADDRGLAFDIELDAGADLMETDRQRLEQILKNLLSNAFKFT-ESGKVKLS 602 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + G ++ D G GI+ + V +F Q I G GLGL I++ + Sbjct: 603 ISAQPGDRIAFAVSDTGIGISPEQQKGVFDAFQQADGTISRRYGGTGLGLSISRELARLL 662 Query: 453 GGQFLIRSKLREGVEVIAILPN 474 GG+ + S+L EG LP Sbjct: 663 GGRIRLESRLGEGSVFTLSLPR 684 >gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 974 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 143/306 (46%), Gaps = 6/306 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKS 250 + + T I + I + Q AE E + ++ + + K Sbjct: 259 VIPLEVWATPIYNEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQLKD 318 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+ SHELRTPLN I+G +E + G L+ + + SG+ L +LIN+ILD Sbjct: 319 EFLANTSHELRTPLNGIIGITESLIDGAAGSLS-PVQIANLAMVVSSGKRLNSLINDILD 377 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 ++++ EL ++ I + + + Q K++E+ +I + DE ++Q Sbjct: 378 FAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNEIPADFPGIDGDENRLQQ 437 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NL+ NA+KFT G + V+ +++ D G GI+ + + SF Q + + Sbjct: 438 IMYNLVGNAIKFT-ESGSITVSATQQQ-NMAEVTVADTGIGISPDKFEDIFKSFEQLNAS 495 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489 + +G GLGL I + ++ HGG+ + S++ +G I LP + + + E + T Sbjct: 496 VSYPSRGTGLGLSITKQLIELHGGRIRVESEVGQGSRFIFTLPLSFQPIASSSEYRTDIT 555 Query: 490 QYKCYA 495 + + Y+ Sbjct: 556 KVRDYS 561 >gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1865 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAILGFS++++ G +++ + Y+ I SG+ LL LI Sbjct: 1380 NRAKSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQPRAYLNSIAASGRTLLALI 1435 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDLS+IEAG+ +L + + +VRE +L +A +K++ + +ID ++ + + D Sbjct: 1436 NDILDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKSLSLLVEIDENVPTAILFD 1495 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIP 418 +RQ++ N + NA+KFT G ++ V I+I D G GI + Sbjct: 1496 PIRLRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQIEITIADTGIGICLEQQH 1555 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ +F Q G GLGL I + + GG + S+L +G I P Sbjct: 1556 SIFEAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLESELGKGSAFTFIFP 1610 >gi|3850150|emb|CAA21950.1| histidine kinase [Candida albicans] gi|238883421|gb|EEQ47059.1| hypothetical protein CAWG_05614 [Candida albicans WO-1] Length = 1081 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L] Length = 896 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731 >gi|77022892|ref|XP_888890.1| hypothetical protein CaO19_5181 [Candida albicans SC5314] gi|76573703|dbj|BAE44787.1| hypothetical protein [Candida albicans] Length = 1081 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] Length = 937 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + L+ + G L Sbjct: 193 VFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLNSRVEG---HML 246 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 247 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 306 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 307 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 362 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E +I+L A EK +E+ ++ + V D Sbjct: 363 DVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQVVGDA 422 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 423 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 482 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G + Sbjct: 483 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFYI 532 >gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex domain structure [Roseobacter sp. MED193] gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex domain structure [Roseobacter sp. MED193] Length = 736 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 101/456 (22%), Positives = 175/456 (38%), Gaps = 36/456 (7%) Query: 33 FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK 92 ++ + ++ + + LL +G + + ++ AA L L + Sbjct: 24 YEVTMKRRF-RTVAVTCNAVVVLGLLWILLGVSINAPSMVIISAVAIAGSIAARLLLKTE 82 Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + W + + P ++ + + Sbjct: 83 YKLLARLLWYFTGW-----------AAVIGSVFTMPPDSYIELFFVVLLG-------GPF 124 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + A+ ++ + H L +Y++ +F + Sbjct: 125 MTFSMRREKAMIIALLGIAFGSWVLFRFMGHDF---FGPPLVEVAVPVSYLSGGVFVTVF 181 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 IL Q E ++ + N AKS FLA+MSHE+RTP+N +LG E Sbjct: 182 AILVVQM--MAFGQLAESYSDDLLRAHQKESKANRAKSEFLAAMSHEIRTPMNGVLGMVE 239 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 V+E + P + + I S LL +I++ILD+SRIEAG+ EL E+ + L+ ++ Sbjct: 240 VLEKTDLAP----EQRRILHTIQESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLI 295 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA-----IG 386 L+ A + +++ + L + D MRQ++LNL+ NA+KF+ Sbjct: 296 EGATATLRPHANQMGVQLSLSVQADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEP 355 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G+V + V I+DNG GI T+ T F + + K +G GLGL I Q Sbjct: 356 GQVKLRVEIREAGWIDFVIEDNGIGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQ 415 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +++ GG + S L EG LP V P Sbjct: 416 QLVSKMGGAVKVDSTLGEGSVFTVRLPL--VEPSGP 449 >gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 857 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 12/310 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 ++ T + + V +L + +S + AE IA Sbjct: 275 LTIIDGELTNVLFNGSVYKDEKGNVLGAVVVARDITAQKRIESELIEAKVFAELAKGIA- 333 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E A+S ++ + A + AK +FL++MSHE+RTP+NAI+GF++V+ + + Sbjct: 334 -ETAQSSAESATQIAVDAVKAKQQFLSNMSHEIRTPMNAIIGFTKVVLKTEL----SAKQ 388 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 KEY+ I SG L+ LIN+ILDL++++AG+ + E+ L + + + + + QEKN Sbjct: 389 KEYLTAIKMSGDALIVLINDILDLAKVDAGKMDFEETPFRLAFSITAMLHLFETKIQEKN 448 Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQY 402 + + + D + V D + Q+ILNL+SNAVKFT G++ V+V Sbjct: 449 LALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAVKFTNK-GQITVSVRMLHADADKVTIE 507 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++ D G GI + +IPT+ +F Q S G GLGL IA+ ++ GG + S + Sbjct: 508 FAVADTGIGITKDKIPTIFENFQQASSGTSRLYGGTGLGLAIAKQLVEKQGGTIRVESVV 567 Query: 463 REGVEVIAIL 472 +G IL Sbjct: 568 EQGSTFSFIL 577 >gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 598 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 3/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + + E KE I+ + Sbjct: 365 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 422 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG EL + L+ V I A+EK IE+ + + Sbjct: 423 LVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRDENIEIAF 482 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T GG V + + SG G I ++D+G GI E ++P V Sbjct: 483 DPDRIEQVLTNLIDNAIRHTEAGGTVRLIIER-SGDGVTIHVQDSGSGIPEEDLPFVFER 541 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA++I+ H G+ + SKL EG LP Sbjct: 542 FYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLPA 592 >gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114] gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114] Length = 864 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 10/275 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ +E + LIA+ + ++ AE N AK+ FLA+MSHE+RTPLN I+G S Sbjct: 321 ELTVFSSEMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSG 380 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 V+ + P+ +Y+ I S Q LL LIN+ILDLS+IEAG + + ++ +++ Sbjct: 381 VLAETKLTPI----QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVI 436 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + +A EKN+++ I P + + DE ++Q+++NL SNA+KFT G + + Sbjct: 437 FDTLSIDIAKATEKNLDLHIHISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHK-GFISI 495 Query: 392 TV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V + I++KD+G GI +L F QG +I G GLGL I Sbjct: 496 SVNFSHRVENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQ 555 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 ++ GG I S+ +G + V +P Sbjct: 556 LIELMGGTLDIESEQEKGSRFSFRIKTNIVNKKLP 590 >gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 574 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 173/448 (38%), Gaps = 30/448 (6%) Query: 29 SKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLS 88 ++ D I + + + P +LVA + I +W + L Sbjct: 2 ARPLLDDSIDLI-ASTGRQARPARLGMAVLVAGFLGFNVSAAIAIVWFAAAMVAEVYGLG 60 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + + ++ + + I + WT LTLV + P Sbjct: 61 VTRLSRRLNLSPVLRR---LGYVTVVIVMVGVWTALTLVLWTSGNPALQWAAICLAAGQL 117 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + +++ P +L I++ + +A M+ Y Sbjct: 118 IHAQSVTFRAPVLFAIDVGMPST-SLIVMPILTGGFAPVQIATMMTAVALMLLYTFTSAT 176 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +N +I + +A + + + + AKS FLA +SHE+RTP+N +L Sbjct: 177 ANNRRIAALEAAEAQAL------------------KASEAKSAFLAMISHEIRTPMNGVL 218 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++ + +GP + RSG+ L+ L+N++LD+SRIEAG+ E+ L Sbjct: 219 AMTDALSRADLGP----DQARQTALLKRSGEDLMTLLNDVLDISRIEAGKLEIECQPFDL 274 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + + A +K +++ I P L + D +RQ++ NL+SNAVKFT GG Sbjct: 275 PELLGDLRALWTPAATDKGLDLVLTIAPGLDAYRLGDPTRLRQILGNLVSNAVKFTRSGG 334 Query: 388 RVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V ++ + + D G G+ + + SF Q +I G GLGL I Sbjct: 335 -VALSARPGEAPGAVVFDVADTGIGMTPEQQGRLFQSFSQADASIARRFGGSGLGLSICS 393 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474 + G + S L G LP Sbjct: 394 QLATLMDGAITVDSDLGSGSTFRLTLPL 421 >gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 720 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ L + E ++ AE KS+FLA++SHE+RTPLNAI+G + Sbjct: 210 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 265 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E +EYI IHRSG+HLL L+N+ILD+S+I++G+ L + SL DIV + ++ Sbjct: 266 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 325 Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 R Q +E F + + D + Q+I NL SNA+KFT G++ V + Sbjct: 326 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 384 Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D G GI+E ++ V F Q + G GLGL I Q + G Sbjct: 385 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 444 Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484 I S+L G V LP +F P+ Sbjct: 445 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 475 >gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] Length = 656 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 7/264 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I A+ ++ RA + AK+ FLA+MSHE+RTP+NAI+G E+++ E N Sbjct: 152 ITGQIRAEQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE----DPN 207 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +T K Y+ + S L+ +I++ILD+S+IEAG+ L + + ++ +C+ + + Sbjct: 208 QTQKRYLATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISN 267 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 KNI + ++D ++ + D ++QV++NL+SNA KFT G + V V T Sbjct: 268 RKNILLTGRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQ-GHILVRVECTEQKDRLR 326 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S++D+G GIAE ++ F Q + + G GLGL I + I+ GG IRS+ Sbjct: 327 FSVEDSGVGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRS 386 Query: 463 REGVEVIAILPNTRVLNFIPEDNH 486 G +P + + + N Sbjct: 387 GHGATFFFDIPVQQSSRAVNQPNQ 410 >gi|289621642|emb|CBI52425.1| putative histidine kinase group protein [Sordaria macrospora] Length = 1298 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850 Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 851 KASSVQCGNDEYAIEFVVSDTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFYFT 934 >gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587] gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587] Length = 736 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 716 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 11/271 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ L + E ++ AE KS+FLA++SHE+RTPLNAI+G + Sbjct: 206 DQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDH 261 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E +EYI IHRSG+HLL L+N+ILD+S+I++G+ L + SL DIV + ++ Sbjct: 262 YLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLF 321 Query: 340 QLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 R Q +E F + + D + Q+I NL SNA+KFT G++ V + Sbjct: 322 HERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHE-GQIKVAFTVQNR 380 Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D G GI+E ++ V F Q + G GLGL I Q + G Sbjct: 381 GPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGT 440 Query: 456 FLIRSKLREGVEVI--AILPNTRVLNFIPED 484 I S+L G V LP +F P+ Sbjct: 441 LRIESELNRGTHVTLSLTLPLLHAPHFEPKP 471 >gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 737 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 12/262 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + D +++AE + KS+FLA+ SHE+RTP+NAI+G ++V+ + P Sbjct: 49 QLVAELDRAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVLNTKVTP----EQHR 104 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + + + LLNLIN +LDLS+IEAG++ L L V + L L A EK +E Sbjct: 105 ALTIVKNASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTLGLTAAEKGLE 164 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYIS 404 + ++ P + + D +RQV++NLL NA+KFT G V + Sbjct: 165 LICRLPPDMPRHMQGDPIRLRQVLMNLLGNALKFTPS-GHVCCSCQVEPKAGDDCVVRFR 223 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I+D G GI ++ T+ F Q + G GLGL I++ ++ GG ++S + Sbjct: 224 IEDTGIGIPADKLGTIFEDFTQVDSSSTRVYGGTGLGLSISRKLVQLMGGDIFVQSTPGQ 283 Query: 465 GVEVIAILPNTRVLNFIPEDNH 486 G +P+ H Sbjct: 284 GSAFEFH--ARLGQVSLPDTAH 303 >gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1238 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 10/273 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + A+ E ++ N KS FLA+MSHELRTPLN+IL S+ + G L Sbjct: 578 ISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLT- 636 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++ +HR+G LL LIN++LDL+++E+GR +L I++ D++ E L+ A+ Sbjct: 637 EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAE 696 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398 K + + +++ + + D + Q++ NLLSNA+KFT G V ++V Sbjct: 697 LKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFT-DHGDVTLSVSSQGRQEDER 755 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D+G GI + + +F Q + G GLGL I + ++ G + Sbjct: 756 ELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQLVLALDGDISL 815 Query: 459 RSKLREGVEVIAILPNT--RVLNFIPEDNHEST 489 +S G LP + P + + T Sbjct: 816 QSAPGLGSTFTVRLPVKVGSLSVEAPVEEPKRT 848 >gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451] gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451] Length = 968 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 26/332 (7%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + + +A A + + Q K+ L +E Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440 Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ ++ Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ ++ L +VRE ++ Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q RA EK I + + + ++ W DE + QV+ NL+ N +KFT G V + + Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPE 615 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G + +++D+G GIAE + ++ +F Q +QG GLGL I++ ++ GG+ Sbjct: 616 GQGIHFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S+L +G LP P D T Sbjct: 674 LSSQLGQGSCFSFTLPLE---PGQPVDTPART 702 >gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 388 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 12/266 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 ++ C I L+ ++ R++AE + +KS FLA+MSHE+RTPLNAI+G Sbjct: 117 MEIEDRDCMVITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVG 176 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSE++ +E +++ + + + L LI +ILDLS+IEAG E S + + Sbjct: 177 FSELLAS----ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDIN 232 Query: 330 DIVRECIIMLQLRAQE--KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + ++R E ++I ++ ++ D + QV+ N ++NA+KFT G Sbjct: 233 QMMFDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQE-G 291 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + Y +KD G GI + ++P V F + K + G GLGL I Q+ Sbjct: 292 SITLGFRPYEEG-LYFYVKDTGTGIPQEKLPHVFERFVKL----KQEKNGTGLGLSICQT 346 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 I+ GG+ + S+ G LP Sbjct: 347 IVRKLGGEIGVESEEGAGSTFWFTLP 372 >gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 911 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 16/317 (5%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P+ + T + L + ++ F + + S IL + L + Sbjct: 459 LPISLPGQTWRLDLAPKAQYLLHHQYSFSMFFSIFQVVIVAFSMTLILLMNNRQAVLSRK 518 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E+ + A++ N AKS+FLA+MSHE+RTPLNAI+GFS++ + + + Sbjct: 519 VEIRTRALALAKHEADKANKAKSQFLANMSHEIRTPLNAIIGFSQLAKRS----NDLAEH 574 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + YI I S LL +IN+ILD+S+IE+ + L E L DI+ M + A KN Sbjct: 575 QSYIHKISSSSDTLLAIINDILDISKIESEKLVLEEMEFDLHDILNRASTMFEPGASIKN 634 Query: 348 IEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------ 400 ++ + + P+ D + Q+++NL SNA+KFT GR+ + Sbjct: 635 VDWALEDNLPAGLFFKGDPLRIEQIVINLCSNAIKFTQQ-GRIVLHATLLEHNKNESPPT 693 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++KD G GI + + +F Q + G GLGL I+ + G I Sbjct: 694 ARIQITVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTI 753 Query: 459 RSKLREGVEV--IAILP 473 S+ G E LP Sbjct: 754 ESEEGVGSEFTLTITLP 770 >gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 843 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 12/277 (4%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + + +A+ +++ AK + AEE N AKS FL++MSH++RTP+NAI+G Sbjct: 409 HRTLCLVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGM 468 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + + +G ++E Y+ I S +HLL+LIN+ILD+S+IE + L+ S +S+ Sbjct: 469 T-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPK 525 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + +M+ +A+E + + + + + + D + Q+++NLLSNAVKFT GG V Sbjct: 526 LLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMV 585 Query: 390 HVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + G + +++D G G+ E + + F + A +G GLGL Sbjct: 586 ELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAH--IEGTGLGLS 643 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 I + ++ GG+ + S + EG L R Sbjct: 644 ITKGLIDLMGGKISVESWINEGSVFRVELEFDRAQAE 680 >gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 1640 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 8/263 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ Q + +L ++ + +A KS FLA+MSHE+RTP+NAI+G + Sbjct: 826 RVRQLQRIQANLEDQVAKRTEELQDMTLQALAAVQVKSAFLANMSHEIRTPMNAIMGMTH 885 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ L + + Y+ I+ S + LL ++N+ILD S++EAG+ +L + L ++ Sbjct: 886 LVLLTDLTA----KQRNYLYKINSSAKWLLGILNDILDFSKLEAGKLKLEYTEFRLETVM 941 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388 + + K + + ++DP + + + D + QV+LNLLSNA+KFT G + Sbjct: 942 QYLDDVTSSLLNSKQLALRFEVDPDVPTTLIGDPLRLGQVLLNLLSNAIKFTEKGSVTLQ 1001 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + S+ D G G+ E + + +F Q + G GLGL I++ + Sbjct: 1002 VQLQASDAKEACLCFSVIDTGIGLNEEQQSHLFAAFNQADDSTTRKYGGTGLGLSISKEL 1061 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + GG I S+L G I Sbjct: 1062 VEAMGGTINIESRLGFGSTFYFI 1084 >gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] Length = 475 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 20/272 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I + ++ L D+ E K R++AEE + KS FLA+MSHE+RT Sbjct: 220 IMRNTQSTDPDRLEMICVNYDITELKETQKQ-----REKAEELDRLKSAFLANMSHEIRT 274 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+GFS ++ + E K+++ I ++ + LL LI+++LDL++IE+G EL Sbjct: 275 PLNAIVGFSTLLVDT----DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELK 330 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAV 380 + L ++ +E ++ ++++ E+ + P L S + D+ + Q+I N ++NA+ Sbjct: 331 LVEVDLRELCKELVVSMRIKVPA---EVALCVAPDLPSYIMRCDKVRLTQIISNFINNAI 387 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 K T+ G + + S+ D G G++ V F +G S +QG GL Sbjct: 388 KHTSK-GTIVLGYEVRQD-EIEFSVTDTGDGMSPEVQQHVFDRFYKG----NSFKQGTGL 441 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I +SI+ GG+ + S+ +G L Sbjct: 442 GLSICKSIIEQVGGKIGVESEEGKGSRFWFTL 473 >gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 620 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 15/249 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYK---------EY 290 E + K+ F+ +SHELRTPL +ILGF E+I + L+ ++ + Sbjct: 367 EVDRLKTEFITVVSHELRTPLTSILGFIEIINKKFTENILPHLDMNNFRLSKAVNKINKN 426 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I G+ + +LIN++LD+S++E+G+ + IS+ ++ + L ++K I Sbjct: 427 FKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITDAYKALSSLFEQKGIPC 486 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + +I PSL + AD + + QV++NLLSNA+KFT G V + +S++D+G Sbjct: 487 YIEIQPSLPFINADRERLIQVVINLLSNALKFTEK-GYVKCKTALNAD-EIVVSVEDSGI 544 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E E + F Q I+ +G GLGL I++ I+ HGG+ + S+L +G Sbjct: 545 GIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGKIWVESELGKGSTFYF 604 Query: 471 ILPNTRVLN 479 +P R Sbjct: 605 TIPLKRKEE 613 >gi|2911164|dbj|BAA24952.1| CaNIK1 [Candida albicans] Length = 1081 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 12/266 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V + + + D G GI + ++ + +F Q + G GLGL I+ Sbjct: 640 SVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 699 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG+ + S+ G Sbjct: 700 KQLIHLMGGEIWVTSEYGSGSNFYFT 725 >gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 1351 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 143/323 (44%), Gaps = 15/323 (4%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-----ILSCQAEKD 222 V + ++T + + +L + Y+ L ++ + + + + + Sbjct: 743 LFVNLHVATVPWKTWWAYTLY-CALLIGVIILVVYLRTRLHQTEITKQKRFVHALEQQVS 801 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + A LE ++AEE KS FLA+MSHE+RTP+N ++G ++++ + Sbjct: 802 EKTASLEAQAHNLKNALEKAEEATKLKSEFLANMSHEIRTPMNGVIGMLDLLKKSDLTV- 860 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + S LL LIN+ILD S+IEA + E+ L ++ + Sbjct: 861 ---EQGQRVNIASSSASSLLVLINDILDFSKIEANKLEIESVDFDLRSLIETLAQSIAHT 917 Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 AQ K + + + S V +D ++Q++ NLLSNAVKFT G + + + G Sbjct: 918 AQLKGLAVIVDVSKVDASKVNSDPTRIQQILTNLLSNAVKFTEQGELSITAALLPSKNEG 977 Query: 401 QYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 QY+ ++KD G GI ++ + +F Q + G GLGL I + + GG Sbjct: 978 QYVLRCAVKDTGIGIEPRKLAQLFEAFTQVDASTTRRYGGTGLGLSITKKLCELLGGDVK 1037 Query: 458 IRSKLREGVEVIAILPNTRVLNF 480 S++ +G I +V + Sbjct: 1038 ASSEVGKGSCFEVIFEVNKVNDA 1060 >gi|183219822|ref|YP_001837818.1| putative sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778244|gb|ABZ96542.1| Putative sensor protein; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 921 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 11/262 (4%) Query: 228 LEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + E R E+ N KS FLA+MSHE+RTP+N +LG ++E + Sbjct: 520 KEKSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNVDI----E 575 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+Y+ + +S LL +IN+ILD+S++E + E+ + ++ + R+ ++ Q +K Sbjct: 576 QKDYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDK 635 Query: 347 NIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 N+++ + + + DE +RQV+ NL+SNA+KFT G + + V Sbjct: 636 NLKLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPS-GIITLAVKLDPSRNFIEF 694 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI+E I + F Q A +G GLGL I++ ++ GG+ + S L Sbjct: 695 CVHDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILN 754 Query: 464 EGVEVIAILPNTRVLNFIPEDN 485 G +P +V IPE + Sbjct: 755 IGSTFKFTIPFHQV--AIPEQS 774 >gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1187 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 144/286 (50%), Gaps = 11/286 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAIL 268 V+ Q +L + + + E +++AEE + K+ F+A+MSHELRTPLN+IL Sbjct: 478 VQQEELQQTNLELEERNRMINARNQEIQQKAEELEQSTRYKTEFMANMSHELRTPLNSIL 537 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 S + T L N E I SG LLNLI+E+LDLS+IEAG+ EL +S+ Sbjct: 538 LLSRYLAENTEQNL-NPDQVESASVILNSGNGLLNLIDELLDLSKIEAGKMELEYQQVSV 596 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + + A+EK ++ K + ++ + D + Q++ NLLSNA+KFT+ G Sbjct: 597 EGVLNDIKSLFAPIAKEKKLDFIIKNELSEITQLETDRMRLEQILKNLLSNALKFTSK-G 655 Query: 388 RVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 +V +T+ G ++ D G GI + + V +F Q + K G GLGL I+ Sbjct: 656 QVSLTLRQPELTGNLLQFAVTDTGIGIPQNKQQLVFDAFQQADGSTKRKFGGTGLGLSIS 715 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR---VLNFIPEDNHES 488 + + GG+ + S+ +G E + +P R V P E Sbjct: 716 RELARLLGGEISLSSEPGKGSEFVLTIPMDRQAIVPTQNPATQPEK 761 >gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 764 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + +E + Y I SG+ LL +IN++ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLCDTEL----DEEQRLYASTIKNSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEA + EL L + E +++LQ A++K I + D L D Sbjct: 272 LDYSKIEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLT 422 +RQV+ NL NAVKFT G V + V +++I+D G GI + +I + Sbjct: 332 IRQVLTNLAGNAVKFTKE-GHVTLRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFG 390 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q +G GLGL I++ ++ GG+ + S+ +G LP + P Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIEMMGGEIWVDSEEGKGSCFGFRLPL--PVEAGP 448 Query: 483 EDN 485 E Sbjct: 449 EAA 451 >gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 860 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 9/262 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + L + + + + AE N AKS FLA+MSHE+RTP+NAI+GF+ + Sbjct: 449 ARELETYRQHLEDLVRERTAQLEGAKDAAELANRAKSAFLANMSHEIRTPMNAIVGFAHL 508 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + P + + I S +HLL +IN++LD+S+IE+G+ L ++D+V Sbjct: 509 LRRDGVTP----KQADRLDKIMGSAEHLLAIINDVLDISKIESGKLVLEAKPFRVVDVVE 564 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + + RAQ K + + + D + Q +LN + NA+KFT G + + Sbjct: 565 RLVGLCAERAQSKGLAFRTMVGALPPVLVGDCTRLSQALLNYVGNAIKFTEA-GTITLRA 623 Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++D G GIA + + F Q + G GLGL I + Sbjct: 624 EVLEEDAHSLLVRFEVQDTGIGIAGDVLSRLFRPFEQADNSTTRKYGGTGLGLAITLRLA 683 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GGQ + S+ G Sbjct: 684 ELMGGQAGVDSEAGVGSTFWLT 705 >gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 593 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 127/268 (47%), Gaps = 8/268 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V ++S + D+ + V + +++E R + + F+A++SHELRTP+ + Sbjct: 330 RTWVLLMSPLYNQQDVRGAVAVLRDMTEERR-----LDKLRKDFIANVSHELRTPIAMLQ 384 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I + G + E KE I+ + L+N++LDL+R+EAG L+ + Sbjct: 385 GYSEAIIDDIAG--SEEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDT 442 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + A+EK +++ I D M QV NL+ NA++ T GG Sbjct: 443 EELTEKIYRKFLGIAKEKQVDLTYDIQVDEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGE 502 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 VH +V + +KD+G GI E ++P + F + A G GLGL I ++I Sbjct: 503 VHFSVQSVESG-LKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNI 561 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 + H G SK G +P + Sbjct: 562 VEAHQGSIHAHSKAGTGTHFTFYIPRKK 589 >gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 974 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 4/281 (1%) Query: 209 KSNVKILSCQAEKDDL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 K + + L Q ++ E+E+AKS ++ K+ E KS FLA+MSHELRTPLN++ Sbjct: 508 KVSNEELEEQTHILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSL 567 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 L S+ + L+ E E I++SG LL LIN++LDLS+IE+G+ ++ + Sbjct: 568 LILSKDLADNKRKNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVV 626 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG 386 L +E + +L+A EK +++ D L V D + Q++ NL+SNA+KFT Sbjct: 627 LRKFAKELMSTFKLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER- 685 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G+V V + + S+ D+G GI E + + +F Q + G GLGL I++ Sbjct: 686 GKVQVEIKKQNKDKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISR 745 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ ++SK+ +G LP I E +E Sbjct: 746 ELAKLLGGEIFLKSKVNQGSTFSLSLPIETNEISISEKENE 786 >gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 627 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 24/329 (7%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-----LIAELEV 230 A+ + I ++ + + K ++ L E L A ++ Sbjct: 298 IGALRNGQDTTIGFIALVIAVAVWLGIVIVRAIKQDIATLQQSEEVQRRHAGELEAVVDE 357 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + E + KS FL MSHELRTPLNAILGFSE++ +G L NE + Sbjct: 358 RTRELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSL-NEQQARH 416 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I G+HLL + N++LDL+++EAG+ +L + + + ++ A +K++ + Sbjct: 417 LTHIQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTL 476 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------- 400 D +L + AD +Q+I NLLSNA+KFT GGR+ VT S G Sbjct: 477 TLHADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGARLNPIPDTL 536 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I++ D G GI + + F Q + G GLGL + + ++ HGG+ Sbjct: 537 YPGEFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGR 596 Query: 456 FLIRSK-LREGVEVIAILPNTRVLNFIPE 483 S G P T PE Sbjct: 597 IWAASDGAGCGSCFTICFPLTP--PARPE 623 >gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B] gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B] Length = 726 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 15/321 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217 A+ +VV L S S + L+ K + ++ Sbjct: 288 AMISFGVALVVILLCWLGFSTWFRVNSKLDAIIHTLNALINSEEKQTKVKVDGSDELTIF 347 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + ++ E++ ++ A N AKS FLA+MSHE+RTPLN I+G +E++ Sbjct: 348 AQQVNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 407 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + +E + DI S Q LL L+N+ILDLS+IE+GR ELS + ++V + +I Sbjct: 408 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMI 463 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + Q +A K +++ + ++ V D+ ++QV+ NL+SNAVKFT G V V V + Sbjct: 464 LFQSKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFT-ESGHVCVDVSYE 522 Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 ++D G GI + ++ T+ F Q + G GLGL I +++ Sbjct: 523 ELPEKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSM 582 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG+ + S G + Sbjct: 583 MGGKLVATSTKGVGTCFEFSI 603 >gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 766 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 12/260 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + R AE N +KSRFLASMSHE+RTP+NA+LG +++ ++ P K Sbjct: 221 EQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTSLKP----NQK 276 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + S + LL++IN+ILD SR+EA + L ++ + + + +AQ K + Sbjct: 277 ELVNTATDSSELLLSIINDILDFSRMEANTFYLENHTFNMHESLNSVLKTFHPQAQNKQL 336 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404 E+ I ++ V D +RQ++LNL+ N++KFT G++ + V G+ + S Sbjct: 337 ELSLVIADNVPVYVQGDAHRLRQILLNLVGNSLKFT-DNGQIQILVNAKEHEGRIQLHCS 395 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GI ++ + F + +G GLGL I Q ++ G + S+ Sbjct: 396 VQDSGIGIQPEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGL 455 Query: 465 GVEVIAILPNTRVLNFIPED 484 G E + ++ PE+ Sbjct: 456 GSEFSFNI---KLDKATPEE 472 >gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 774 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 165/334 (49%), Gaps = 14/334 (4%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKD 222 F P + L ++ G + + +++L A + Sbjct: 301 AGFPPCYIELLENFQAKAYITLPIFLGDRLWGLLGIYQNNAPRTWLTEEIEMLRQIATQL 360 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + ++ AE+ N AKS+FLA+MSHELRTPL+AILGF+E++ T Sbjct: 361 GVALQQAKLLETLQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELL---TGDTN 417 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + I +S QHLLNLIN+IL LS+IEAG + A +L++ + + L Sbjct: 418 LTSDQLESLDIITQSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLA 477 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRG 400 A++K +E+ + D ++ V + DEK ++QV++NLLSNA+KFT + GRV + + + + + Sbjct: 478 AKQKQLELIFERDANVPEVIYLDEKKLKQVLINLLSNAIKFTEV-GRVTLKITYDAHQQN 536 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++ D GPGI E E + F Q S I+S QG GLGL I+Q ++ GG+ + + Sbjct: 537 LHFAVIDTGPGIPEHEQNKLFQVFQQTSTGIRSR-QGTGLGLAISQQLVQLMGGEIRVTT 595 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 +G L PE + + + Sbjct: 596 AENQGSCFWFELSLA-----SPEKDQADISIQAF 624 >gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56'] gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56'] Length = 669 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 144/332 (43%), Gaps = 4/332 (1%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L A + V S + AL + + ++ L T Sbjct: 189 WLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPAAFRERMLAYHAEPDGTLDLCTSDG 248 Query: 205 YHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L + + + + + R AE + AKS FLASMSHELRTP Sbjct: 249 RSLRATERRTAEGGTVCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTP 308 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGF++++ + PL + KE I + + G+HLL LI++ILDLSRIEAGR +S Sbjct: 309 LNAILGFAQLLHRDRKTPLTD-RQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSI 367 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKF 382 +++ +++ E L AQ IEI P L + AD Q+++N SNA+K+ Sbjct: 368 EPVNVPEVLIEVKTTLDPMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKY 427 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GGR + V I + DNG GI + + + F + +G G+GL Sbjct: 428 GRRGGRATIAVSMPEDGVVKICVIDNGIGIPQEQHAKIFQPFQRAGQ-ETGPIEGTGIGL 486 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I + + GG S EG E LP Sbjct: 487 AITKRLAELMGGGVGFASIPGEGSEFWIELPA 518 >gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 435 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 22/299 (7%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + + ++ E +LE + + R AE+ + AKS+FLA MSHELRT Sbjct: 137 LELRVQERTTELTHTLNELQQTQVQLEDSLRELIQARDVAEKASQAKSQFLAMMSHELRT 196 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+G+S+++E+E NE + + I +GQ LL + + IL++ +IEAG++ + Sbjct: 197 PLNAIIGYSQLLEMEAQDQDLNEFIPD-LQQISHAGQDLLEIFSNILEMCQIEAGKHRFN 255 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + ++ E I Q A + N + SV AD MRQ +L LLSN+ KF Sbjct: 256 VYEFEVKALIDEVIAQNQPLADKNNNTLTVHFVNDPGSVCADRIWMRQCVLQLLSNSCKF 315 Query: 383 TAIGGRVHVTVGWTS--------------------GRGQYISIKDNGPGIAEGEIPTVLT 422 T G + V++ + + D G GI + + Sbjct: 316 TH-NGTITVSLERHNRSQLQSKSSVYNQVNSTDCLEDVILVKCNDTGIGIKAEYVSQIFE 374 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q + GVGLGL IA+S+ GG + S +G LP + Sbjct: 375 PFFQVDGSTTRKYGGVGLGLAIAKSLSQLMGGDISVESVFGQGSTFTLWLPTELPPSTS 433 >gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] Length = 1158 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 29/298 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE--------------NLAK 249 T L K+ ++ S Q E ELE +L +E ++ E + K Sbjct: 414 TELLEKNEAELRSQQEELHQSNEELEEKANLLEEQKETLENAKMQIETKAHELELNSKYK 473 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN+IL S+++ L+ + E+ +I SG LL LINEIL Sbjct: 474 SEFLANMSHELRTPLNSILILSQLLADNKNKSLSEKEV-EFAQNICNSGSDLLELINEIL 532 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKG 367 DLS++E+G+ +L +SL I M A++K I+ L +V D + Sbjct: 533 DLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTTVHTDRQR 592 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------ISIKDNGPGIAEG 415 + Q+I NLLSNA KFT+ G V + S + +S+ D G GI + Sbjct: 593 LEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDTGIGIPQN 652 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +F Q + K G GLGL I++ + GG+ + S+ +G +P Sbjct: 653 KQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTFTLFIP 710 >gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 578 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 140/307 (45%), Gaps = 9/307 (2%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-KDDLIAEL 228 + AL T + L G S T T F+ ++ E K++L + + Sbjct: 131 INSALITGIQTQTSDSVLLLLGGRKGQFSLETKATLQRFRPLLERAINDIEHKEELQSLV 190 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +++AE N AKS+FLA MSHELRTPLNA+LG +V+ + +N + Sbjct: 191 RIKTHELYIAQQQAEHANQAKSQFLAMMSHELRTPLNAVLGLIDVLRED-----SNRSQL 245 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + + S + LL +IN+ILDLSRIE+G ++L + L + + K I Sbjct: 246 DLLEQMENSAELLLVIINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGI 305 Query: 349 EIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + W D + Q++ N++ NA+KFT G V V + T+ I ++D Sbjct: 306 RFNVRTSICDHYEYWVDPVRLMQILFNVIGNAIKFTEA-GSVDVRLS-TARNELVIHVED 363 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI I + + F Q +I G GLGL I + ++ G + S L +G Sbjct: 364 TGIGIEPERIEHLFSPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSH 423 Query: 468 VIAILPN 474 I LP Sbjct: 424 FIIRLPV 430 >gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 606 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ + F+A++SHELRTPL + + E + ++G + ++ Sbjct: 370 EKIDMERREFVANVSHELRTPLTTMRSYLEALTDGAWKDEKIAPQ--FLGVTQNETERMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ L++ ++ ++ I + A+++N+ +K+ + V Sbjct: 428 RLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFE-MAKQQNVTFKRKLPNTEIFVE 486 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE M QV+ N++SNA+K++ GG++ + + + +SI D G GI + + + Sbjct: 487 IDEDKMTQVLYNIISNALKYSPEGGQITFKLRELNEK-IEVSISDQGVGIPKENVKKIFE 545 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG SK +G + LP Sbjct: 546 RFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEGKGTTIYFTLPYEPAQE 602 >gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1295 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 161/366 (43%), Gaps = 17/366 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AIM 180 ++ L + + + I +++ + + L Q + Sbjct: 440 VIELGGHHPFDSRAELLLQRVAENIGVAVHTTEVRYELAMLLETTQEQAEKLQVQQEELR 499 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + A LA++ L SN ++ + EL+ A+ + + Sbjct: 500 QTNQELQEQAKALASSEERLQVQQEELRVSNEELEERSRSLAEKNRELDRARRELETKAR 559 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E KS FLA+MSHELRTPLN+IL S+++ G L E+ IH SG Sbjct: 560 DLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNLQ-PRQLEFANTIHNSGSD 618 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL+LINE+LDLS+IEAGR E++ + L +++ + Q +A++ + + +I P Sbjct: 619 LLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQNGLRLSGEITPEAPA 678 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKD 407 +++ DE +RQ++ NLLSNA+KFT G + + G R Y ++ D Sbjct: 679 TIFTDETRLRQILKNLLSNALKFTQQ-GEITLRCGRPARAELPTGLRLVPERAVYFAVSD 737 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G GIA ++ V +F Q G GLGL I++ + GG+ + S EG Sbjct: 738 SGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELSVSSCEGEGTT 797 Query: 468 VIAILP 473 LP Sbjct: 798 FTLWLP 803 >gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 781 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 94/390 (24%), Positives = 163/390 (41%), Gaps = 14/390 (3%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R+ ++ + G + L + TLL A ++N +L Sbjct: 125 RVTVVQPVMLDGRQVGSVLLSVGLESLYAQIGWQALVTLLAAALAMLVANRLLGRLNESV 184 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P+ A + ++ + + + ++ + +I E + A Sbjct: 185 VVPL--ARLSALMLRISSRNDYTVRAAGSEIAEMNTLARGFNDMLGQIQQRDQELAEHRA 242 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 LE + K AE + AKS FLA+MSHE+RTP+N +LG +E++ +G + Sbjct: 243 RLEDQVAHRTVALKAAEAASQAKSDFLATMSHEIRTPMNGVLGMNELL----LGSSLDPQ 298 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + + SGQHLL +IN+ILD S+IE+G L L++++ + + M +A+ K Sbjct: 299 QRMWAESVQHSGQHLLGVINDILDFSKIESGHLSLETVDFDLVELIDDTMRMFAHQAEHK 358 Query: 347 NIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-- 402 +E+ +I PS ++ D +RQ++ NL+ NA+KFT G V V Sbjct: 359 GLELACRITPSQRTIGLRGDPFRLRQIVANLVGNAIKFT-EHGAVVVHATVNDNGDAAAV 417 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GIA + F Q + G GLGL I + + G + S Sbjct: 418 GLCVEDTGIGIAPEAQARIFEHFSQADGSTTRRFGGTGLGLAICRRLANLMGSDITVASA 477 Query: 462 LREGVEVIAILPNTRVLN--FIPEDNHEST 489 +G L R P+ E++ Sbjct: 478 PGQGARFCLDLRLARASADFERPDPAGEAS 507 >gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326] gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1198 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A LE + R A N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 458 AALERFANKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK---- 513 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + YI + S LL LIN+ILD S+IEAG+ ++ + L +++ ++ LRA E Sbjct: 514 AQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLRASE 573 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 + +E+ I+ + + + D + QV++NL +NAVKFT G ++ V+V SG Sbjct: 574 RGLELLIHIERDVPTALVGDPLRLGQVLINLSNNAVKFTERGEIKITVSVAERSGENIRL 633 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D+G G+ + + + F Q + G GLGL I++ + GG + S+ Sbjct: 634 KFRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESE 693 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486 G + T++ + ++ Sbjct: 694 AGVGSTFSFTI-QTQISQALKQEQT 717 >gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 957 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 11/256 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + A+ + AE + AK+ FLA+MSHELRTPLN ++ +++E+ + N Sbjct: 559 VTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMMQLLEMTPL----N 614 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ +S + L L++++LD+SRIEAG+ E+ E A ++ ++++ + AQ Sbjct: 615 GEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSVSELFNTSAQ 674 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K + + DPS + D +RQV+ NL+ NA+KFT G V V + RG Sbjct: 675 SKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQ-GFVRVELTALPPRGLEQ 733 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G GI + + T F Q A QG GLGL I + ++ GG + Sbjct: 734 CRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVRRLVELMGGHITL 793 Query: 459 RSKLREGVEVIAILPN 474 S EG EV LP Sbjct: 794 DSIFGEGTEVHVALPL 809 >gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] Length = 941 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 131/242 (54%), Gaps = 6/242 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ ++++SHELRTPL ++LG++E++ + P E K+Y+ I++ L Sbjct: 581 EADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP---ERQKKYLNTIYQEANRLTV 637 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ R+E+G+ + SL +++E I +++ +I+ D + V Sbjct: 638 LINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQFVSDADDDM--VLG 695 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV NL+ NAVK++ GG + + + ++ + ++SI D G G+ E +P + T Sbjct: 696 DRDKLLQVFQNLIQNAVKYSPAGGNITIKL-HSAPKELHVSIIDEGLGVPEEAMPNLFTK 754 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + + + G GLGL IA+ I+ H G ++ SKL +G ILP + + I Sbjct: 755 FFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILPKVKGIAEITT 814 Query: 484 DN 485 ++ Sbjct: 815 ES 816 >gi|328856936|gb|EGG06055.1| hypothetical protein MELLADRAFT_43665 [Melampsora larici-populina 98AG31] Length = 1113 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 18/286 (6%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ S + + + ++ L A + R+ AE N +KS FLA+MSHE+RTP+N I+G ++ Sbjct: 542 EMNSLKNQINSMVFSLRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQ 601 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + T+ +E + +H +LL +I+++LDLS+IEAGR + + +L V Sbjct: 602 I----TLATELTRQQRENLTIVHAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTAV 657 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A N+++ I P + V D MRQVI NL+ NA+KFT GG V + Sbjct: 658 FGVLKSLAVKALTSNLQLVFDIAPDVPDFVVGDPFRMRQVITNLIGNAIKFT-SGGHVGL 716 Query: 392 TVG------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + T + D G GI ++ + +F Q + G GLGL I+ Sbjct: 717 SCEVAYQDPITDEFRLEFCVFDTGIGIKPDKLDLIFDTFCQADGSTTRKYGGTGLGLTIS 776 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + ++ GG + S+ G + + P+D+ S ++ Sbjct: 777 KRLVNLMGGTLWVESEYNYGSKFFFSI------TVKPDDDPSSDEW 816 >gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 654 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L A S E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 466 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I + LL LIN+ILDLS+IEAG ++ + I + + E +QLR + Sbjct: 467 EEMSEYVELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 526 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ S +++ D+ + Q++ N NA+KFT + G + + Y Sbjct: 527 HNNVTFTFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEV-GTIRMGYRLLDPETIYFY 585 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + S QG GLGL I +I+ GG+ + SK + Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 642 GSTFWFTLPYRQ 653 >gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 538 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 289 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET-- 346 Query: 280 GPLNNETYKE-YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + Y+ + + + LLNLI++ILD+S+IEAG +L + + + RE I Sbjct: 347 ---DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIAT 403 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + ++ +E+ + + AD+ + QV+ N L+NA+KFT G + ++ Sbjct: 404 FSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTK-GSITLSYLLEDE 462 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI + + + F + S QG GLGL I QS++ GG+ + Sbjct: 463 SQVRFCVTDTGKGIPDEQKHEIFNRFVKLD----SFVQGAGLGLSICQSLVKRMGGKIGV 518 Query: 459 RSKLREGVEVIAILP 473 S+ EG P Sbjct: 519 ESREGEGSCFWFTHP 533 >gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 632 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L A S E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 389 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 444 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I + LL LIN+ILDLS+IEAG ++ + I + + E +QLR + Sbjct: 445 EEMSEYVELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 504 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ S +++ D+ + Q++ N NA+KFT + G + + Y Sbjct: 505 HNNVTFTFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEV-GTIRMGYRLLDPETIYFY 563 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + S QG GLGL I +I+ GG+ + SK + Sbjct: 564 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 619 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 620 GSTFWFTLPYRQ 631 >gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 1587 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 137/276 (49%), Gaps = 12/276 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHEL 260 ++ +S L A + K +S+E +AE+ +AKS+FLA+MSHE+ Sbjct: 1023 HHNWTQSEETYLRSLATLVGSTLVSQKRKVISEELKVALVKAEDAAIAKSQFLATMSHEI 1082 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N +LG E+++LE++ + +S LL +IN+ILD S+ EAG+ E Sbjct: 1083 RTPMNGVLGMLELVQLESLSKPIETK----VDIAKKSAHSLLGVINDILDFSKAEAGKIE 1138 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNA 379 L E + D++ E AQ+K IEI + S + D +RQVI NLLSNA Sbjct: 1139 LEEINFNGRDLIGEVAAAQAFTAQDKGIEIILDLVALEPSQLCGDPGRIRQVITNLLSNA 1198 Query: 380 VKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT+ G V V+ G +SIKD+G GI+ + + T F Q + Sbjct: 1199 VKFTSQ-GEVVVSAKINKVAQGLEFVVSIKDSGIGISLEKQEQLFTPFSQVDASTTREYG 1257 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + + GG + S+ +G A + Sbjct: 1258 GSGLGLAICKQLCELMGGAISLTSEAGKGSTFTATI 1293 >gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 980 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 3/264 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + +L + ++ + + K+ FLA+ SHELRTPLN I+G ++ + Sbjct: 423 ELANSFNSMAKQLRASFKALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLL 482 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 GPL T + I SG+ L NL+N ILD S++ +L ++ + +IV Sbjct: 483 DGATGPLPEPTRTNLV-MIVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVV 541 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + +K++ I L V+ADE ++Q++ NL+SNA+KFT GR+ ++ Sbjct: 542 FTLSKPLIGKKDLTFINNISVDLPPVYADENRLQQILHNLVSNAIKFTDS-GRIEISAEI 600 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S+KD G GI+E + + SF Q + G GLGL + + ++ HGG Sbjct: 601 -KENLLVTSVKDTGIGISEDKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGT 659 Query: 456 FLIRSKLREGVEVIAILPNTRVLN 479 + SK+ G LP Sbjct: 660 IHVASKVVVGSRFTFTLPIAEPTE 683 >gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14] gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14] Length = 700 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 7/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + E +K+AE N AKS+F+A MSHE+RTPLNA+LG E + L + Sbjct: 305 ITSRKKRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGLNN--- 361 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + +S LL +IN+ILDLSRIE+G + L S I++++ +R L +A Sbjct: 362 -KQNLWLSQMDQSAHLLLAIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQAA 420 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N++ +ID ++ ++ D+ + QV+ NL+ NAVKFT+IG V I Sbjct: 421 KNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRV--VVRKVDDNIEI 478 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA+ + F Q +I G GLGL I+Q ++ G + S+L Sbjct: 479 AVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMNGTISLESELG 538 Query: 464 EGVEVIAILP 473 G +P Sbjct: 539 TGSCFKVSIP 548 >gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1462 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 23/313 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 A + I + + + ++ + EL ++ AE N AK Sbjct: 721 VWTADEIELLEAIAEQMG-IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKG 779 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHE+RTP+N ++G +E++ + + +Y+ I +SG+ LL +IN+ILD Sbjct: 780 EFLAMMSHEIRTPMNGVIGMTELLIMTDLNL----QQLDYVQTIRQSGETLLTIINDILD 835 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+IEA + L A L ++ + M A+ K++E+ IDP + D+ +R Sbjct: 836 FSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLR 895 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVG----------------WTSGRGQYISIKDNGPGIA 413 Q++ NL+ NA+KFT G V +TV +++D G GI Sbjct: 896 QILSNLIGNALKFTEK-GEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIP 954 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q + G GLGL I+Q + GG + S+ G + Sbjct: 955 LDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCIL 1014 Query: 474 NTRVLNFIPEDNH 486 T + E + Sbjct: 1015 TTAQAPALAEADS 1027 >gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 641 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ + ++ L D ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 259 DIGDRIRRSQELLD-AKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEIIALT----E 313 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + + E + +L+ Sbjct: 314 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLK 373 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +E+ + D + QV+ N LSNA+K T G + + Sbjct: 374 MKK-GVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 430 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 431 FYVADTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 486 Query: 463 REGVEVIAILPNTR 476 +G LPN + Sbjct: 487 EKGSTFTLYLPNKQ 500 >gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] Length = 607 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 3/231 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F+A++SHELRTPL + + E +E + E + ++G + ++ Sbjct: 371 EKIEQDRREFVANVSHELRTPLTTMKSYLEALEDGALDE--PELARRFVGVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+I++ Y L + + + E I ++ AQ ++I + I + V Sbjct: 429 RLVNDLLQLSKIDSHDYRLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVE 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + QVI N++SNA+K++ GG + T G +SI D G GI + Sbjct: 489 VDKDKLTQVIDNIISNAMKYSPEGGNIT-TTLMHQGHNVRVSISDEGMGIPRENQSKIFD 547 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A + G GLGL IA+ ++ HGG+ + S+ G + LP Sbjct: 548 RFYRVDKARARSIGGTGLGLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 12/233 (5%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA++SHE+RTP+NAI+G + ++ ++ + ++++ I + LL+LIN+IL Sbjct: 825 SEFLATISHEIRTPINAIMGMAGLLLDTSL----DAQQRDWVQTIRYGSEVLLSLINDIL 880 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 D S+IE+ + EL E+ SL ++ E + ++ +AQ K++E+ +DP+L ++ D + Sbjct: 881 DFSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRL 940 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLT 422 RQ++ NLLSNA+KFT G V VTV ++D G GI + + Sbjct: 941 RQILANLLSNAIKFTPQ-GEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRLFK 999 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F Q +I G GLGL I+Q + GG ++S+ +G +P Sbjct: 1000 PFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPLK 1052 >gi|45655765|ref|YP_003574.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602736|gb|AAS72211.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 841 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 91/421 (21%), Positives = 158/421 (37%), Gaps = 31/421 (7%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L++ K + ++ + + L + T + Sbjct: 277 FTVLSIGIFMCMFIKSLFPEEVSSFFINSAIGVFGCSSFTLALPVRVFTEFFSIIFVLIS 336 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 T L L +L F VV+ + + IS G+ Sbjct: 337 FLPLGLTTYLFKAHKMKRKGATLILIAYLIFSTVVLNDILFTLGYISTGYISYIGITVFI 396 Query: 197 LSFFTYITYHLFKSNVKILSCQAE-----------KDDLIAELEVAKSLSD--------- 236 + L ++ E ++L+A E+ + + Sbjct: 397 FFQAGVLAQQLTQAFNHSEDLALELKSTLQENIETHNELLALKELQNTNLEFQVQSRTRE 456 Query: 237 --ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R AE N KS+FLASMSHE+RTPLN I+G E + + +E + I Sbjct: 457 LLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKSTPL----DENQQYIRNLI 512 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +SG++LL +IN+ILD S++E + L + V E I + +A +K + + Sbjct: 513 QKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDY 572 Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGP 410 P + D++ + QV+ NL+SNAVKFT G++ + + I + D+G Sbjct: 573 SPDFIDKSVGDKRRITQVLSNLISNAVKFTDS-GKIQIRAFSEKIETKIEYKIQVIDSGI 631 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI +I + F Q +I G GLGL I++ ++ G+ + +G Sbjct: 632 GIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEF 691 Query: 471 I 471 Sbjct: 692 T 692 >gi|239993534|ref|ZP_04714058.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii ATCC 27126] Length = 890 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 17/299 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + N + E + ++LE E + +AE+ +KS FLA+M Sbjct: 341 IGKLAKAALVFSDKNRETEKLLDEARTMNSQLESLNKAITEAKIKAEQATASKSMFLANM 400 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N I+G E+ + + + T K Y+ SGQ LL++IN+ILD S+IEA Sbjct: 401 SHEIRTPMNGIIGLIELAQQQELST----TVKGYLDKAAYSGQILLSVINDILDFSKIEA 456 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNL 375 G+ ++ E + SL + I ++ LRA+EKN+ + ++P V D + Q+I+N+ Sbjct: 457 GKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFTVNPKIPPQVIGDPLRIAQIIMNI 516 Query: 376 LSNAVKFTAIGGRVHVTVG--WTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +NAVKFT GR+ + + I D+G G++ ++ + F Q + Sbjct: 517 GNNAVKFTEQ-GRIDIEFDGNLNEKGNVLNLTMRITDSGIGMSAAQLDRIFKPFTQADGS 575 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------VLNFIPE 483 G GLGL I + G+ S + +G LP VL P+ Sbjct: 576 TNRKYGGTGLGLAIVSQLTELMNGRLDATSTMGKGSTFEVELPLKAFKNQPGVLEQTPQ 634 >gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] Length = 765 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 160/315 (50%), Gaps = 17/315 (5%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 +V+ +MS ++ + + ++ + ++ E D+I + Sbjct: 230 AIVILSIILFLMSFFIILFRIIYPMDLLRIVMLKLSSNETNVEIEKNEFDDEMGDMIGAV 289 Query: 229 EVAKSLSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ K +++ + A+ N AKS FLA MSHELRTPLNAILGF+ +++ Sbjct: 290 EIFKENTEKLITSEHQLKIAMEDAKNANQAKSIFLARMSHELRTPLNAILGFANILKKSM 349 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 KE + I +SG+HLLN+INEIL+LS+IEAG+ E++ ++++E + Sbjct: 350 NATNQE---KENLNIIKKSGEHLLNIINEILELSKIEAGKIEINPKNFDFCELIKEIEDI 406 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 LR + KN++ +L + ADE+ +RQ+++NLL N++KFT G++ + + ++ Sbjct: 407 FALRCKSKNLKFTINQTNNLPKFIKADEQRLRQILINLLGNSLKFTNE-GQIFLNI-YSL 464 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + +KD G GI + F Q +QG GLGL I + ++A GG Sbjct: 465 NNKLFFEVKDTGIGIDLKNQEKIFKPFEQV-KLDNYTQQGTGLGLAITKELIALMGGTIY 523 Query: 458 IRSKLREGVEVIAIL 472 ++S++ +G E + Sbjct: 524 VKSQINKGSEFYFSI 538 >gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] Length = 617 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI E +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] Length = 617 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI E +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] Length = 715 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 21/301 (6%) Query: 201 TYITYHLFKSNVKILSCQA-------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + L +A E + I +L+ A ++ A+ ++AK FL Sbjct: 9 AAWQKRYERERKARLEAEAIAEKSTRELYERIQDLKKAGEELRHAKEAAQAASVAKGNFL 68 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTP+NAI+G +E++ + +T +EY+ + +G LL+L+N+ILD S+ Sbjct: 69 ANMSHEIRTPMNAIIGMTELVLDTDL----TDTQREYLAMVREAGNSLLSLLNDILDFSK 124 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372 IEAG+ EL L + + + + L RA K IE+ + P + ++ D +RQ++ Sbjct: 125 IEAGKLELESHVFGLRERLGDAMKSLAFRAHGKGIELACHVHPEVPDALLGDASRLRQIV 184 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +NL+ NA+KFT G V + V + S + ++ D G GI ++ ++ SF Q Sbjct: 185 VNLVGNAIKFTTQ-GEVVLDVAYESPTNNAANLHFTVTDTGIGIPTDKLESIFDSFEQAD 243 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNTRVLNFIPED 484 ++ G GLGL I+ ++ GG+ S+L G + L R P + Sbjct: 244 MSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFTMKFSLAAERPAEAQPLE 303 Query: 485 N 485 Sbjct: 304 A 304 >gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 891 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 9/395 (2%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 N + +G+ + +L+ + L + + + + ++ + ++ Sbjct: 339 FRNGEGLVGQAALESRTILLTNVPDNYIQITSGLGKASPASLLVMPVQFEGQVIAVMELA 398 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + F L + ++ ++ LA + L N Sbjct: 399 SFGAFTPIQQSLLQQVSTHLGSVLSSLQGRMQVEQLLAESQVLTE-ELQTQSEELRGINE 457 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 K+ + ELE K+ +E ++ + KS FLA+MSHELRTPLN++L S Sbjct: 458 KLEEQNKNSEQKTRELEKTKTQLEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSN 517 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ T G LN+ K Y IH+SG LL LIN+ILDL+++EAG+ +L + L +I Sbjct: 518 ILATNTEGNLNDHQVK-YAYTIHQSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEIS 576 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 A++K + +D L ++ DE+ + Q+I NLLSNA KFT G V Sbjct: 577 EFAEQQFLPVARQKGLSFKTVVDADLPQTLYTDEQRLMQIIKNLLSNAFKFTER-GEVKF 635 Query: 392 TV-----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + G + G SI D G GI + + + +F Q G GLGL I+ Sbjct: 636 HIHHAQSGSRAKGGIAFSIIDTGIGIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISI 695 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ GG + S +G LP+ Sbjct: 696 NMAQLLGGAIHVTSVPGKGSVFTLTLPSEEASESA 730 >gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 608 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 118/232 (50%), Gaps = 3/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL ++ + E + + + ++ ++ Sbjct: 371 ERIEQERREFVANVSHELRTPLTSMKSYLEALLDGAVNDSDVAPQ--FLQVTSNETDRMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+++A + + +++++++ I ++ +++NI+ +++ SV Sbjct: 429 RLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPDVPLSVM 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + Q++ N++SNAVK++ GG + +T+ R +S+KD G GI + +P V Sbjct: 489 GDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKER-LIVSVKDEGVGIPKENLPHVFD 547 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A + G GLGL IA+ I+ HGG + S +G LP Sbjct: 548 RFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKGTTFFFSLPV 599 >gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 417 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 156 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 214 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 215 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 270 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ K +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 271 VDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 329 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + +V F + + QG GLGL I Sbjct: 330 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 384 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 385 KSIVSQMGGEIGVESTEGVGSCFWFTHP 412 >gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 820 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 422 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ + Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 593 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 650 KGTTFTFTLP 659 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 134/268 (50%), Gaps = 5/268 (1%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 FK + + E+ AE + L R AE N K FLA +SHELR+PLN I Sbjct: 1002 FKGYIGSVIDITERKTAEAERDRLLELEQVARTEAETANRIKDEFLAVLSHELRSPLNPI 1061 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG++ +++ P K+ I I R+ + LI ++LD+SRI G+ L ++ Sbjct: 1062 LGWARLLQTREFQP---AEIKKAIATIERNAKLQAQLIEDLLDVSRILQGKLNLKMFPVN 1118 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L+ ++ + ++L A+ K+I+I +D SL V D ++QVI NLLSNAVKFT G Sbjct: 1119 LVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLLSNAVKFTPEEG 1178 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 ++++ + + Q I++ D G GI+ +P V F Q G+GLGL I + Sbjct: 1179 KINIQLERIDSQAQ-ITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGGLGLGLAIVRH 1237 Query: 448 IMANHGGQFLIRS-KLREGVEVIAILPN 474 ++ HGG S +G LP Sbjct: 1238 LIELHGGTIWAESLGEGQGAIFRVRLPL 1265 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 136/308 (44%), Gaps = 9/308 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + + +A T + + F+ + + Sbjct: 270 SLPCGIWERSPHQAIAVPIAPSGQTGKAGILIAGLNPFRLFDDNYKRFIDLVAAQIAASI 329 Query: 231 AKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETMGPLNNE 285 A + + +E RKRAE E + AK+ F +++SHE RTPL +LG E + L Sbjct: 330 ANAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLAN--CATLLPA 387 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E + + R+G LL L+N +LD SRIEAGR + S +L E + + + Sbjct: 388 HEREQLEMVQRNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVER 447 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 +E+ + V+ D + +++LNLLSNA KFT G++ V++ W + ++ Sbjct: 448 AGMELSVNCPSLPAPVYVDREMWEKIVLNLLSNAFKFTMT-GKIAVSLQW-ANDHIEFAV 505 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI EIP + F + A +G G+GL + Q ++ HGG + S L G Sbjct: 506 KDTGIGIPAEEIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAG 565 Query: 466 VEVIAILP 473 +P Sbjct: 566 SCFTISIP 573 >gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] Length = 622 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 11/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS +++ N Sbjct: 383 ITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQE----ADNP 438 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +Y+ I + + LL LI++ILDLS+IEAG ++ + ++ + E +Q+R Sbjct: 439 EEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAMQMR-T 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ D + +D+ + QV+ N + NA+KFT+ G + ++ G+ S Sbjct: 498 SPQVELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKFTSE-GSITISYQI-KGKEAKFS 555 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + V F + + G GLGL I QSI+ GG+ + S+ + Sbjct: 556 VEDTGIGIEPEKQTAVFNRFVKL----NNFIPGTGLGLSICQSIITQLGGKIGVDSEPGK 611 Query: 465 GVEVIAILPN 474 G P Sbjct: 612 GSCFWFTHPL 621 >gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 959 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 8/264 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + E R++AEE KS FLASMSHE+RTP++ I G +++ G Sbjct: 550 QQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLL----GGS 605 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 K Y+ S Q LL+++N+ILD S+IEAG+ ++ ES +++ + + Sbjct: 606 ELTGEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAI 665 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR 399 QEK +E+ D V D+ RQ++ NLL NAVKFT G V + Sbjct: 666 LCQEKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTGYIEVTTCIEKNPDN 725 Query: 400 GQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + S+KD G GIA+ + T+ F Q ++ G GLGL I++ + GG Sbjct: 726 TLRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCGLMGGDIK 785 Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481 + S G + + Sbjct: 786 LESVKGNGSTFSFTIQLEEADESL 809 >gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1263 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 10/331 (3%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 AV + + L+ +A + + + + ++ Q Sbjct: 807 FILAVVSALVLLYRIRFKILRRQREALERRVAERTSELEAANLSLAEKQEEIALQNKELQ 866 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +L + + + RAEE + KS FL +MSHE+RTP+NAILGFSE+++ + Sbjct: 867 RGRVELEDRVHERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAILGFSELLKDKD 926 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ + E+I I +G+ LL LI++ILD+S I++GR +L + +++ E Sbjct: 927 ---IDEKDRNEFIEIIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYIDEVLNELKDF 983 Query: 339 LQLRAQE-KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +L+ ++E+ + AD RQV+ NLL NA+KFT G + Sbjct: 984 YRLKTTSLVSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALKFTEK-GSIRFGCKPR- 1041 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI + E V +F + G G+GL I + +++ GG Sbjct: 1042 NGEALFHVVDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLISGMGGDIW 1101 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + S+ EG LP ++ P D S Sbjct: 1102 VESQPGEGSVFYFTLPLSQ----RPVDEDSS 1128 >gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 956 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 8/253 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + A+ + +++AEE KS FLASMSHE+RTP++ I G +++ + Sbjct: 548 QQDVTQQRQAERYLQDAKQKAEESAHMKSGFLASMSHEIRTPIHGISGVLQLLTNSPL-- 605 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N+ K Y+ S Q LL+++N+ILD S+IEAG+ ++ + L++ + + Sbjct: 606 --NDEQKHYLSLATFSIQGLLHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQSQYAI 663 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 QEK + + + V D RQ++ NL+ NAVKFT G V T+ T+ Sbjct: 664 LCQEKGLRLHFHFNLQGFHVVIGDSVRFRQILSNLIGNAVKFTEKGEIDVTTTLEHTNDD 723 Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ +KD+G GIA+ + + F Q ++ G GLGL I++ + G+ Sbjct: 724 KLRLTCAVKDSGIGIAKDKQAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMDGEIH 783 Query: 458 IRSKLREGVEVIA 470 + S+ EG Sbjct: 784 LESEKGEGSTFTF 796 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 10/258 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ ++ AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 849 ITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTP--- 905 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I ++GQHLL +IN+ILD SRIEAG+ + + L ++ ++ +A Sbjct: 906 -RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKAG 964 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K +E+ + P + D + Q+++N +NA+KFT G +HV V G+ Sbjct: 965 VKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTER-GEIHVRVRVVERHGRRV 1023 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G G+A ++ + SF Q + G GLGL I++++ GG+ Sbjct: 1024 LLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGAE 1083 Query: 460 SKLREGVEVIAILPNTRV 477 S L EG +LP V Sbjct: 1084 SVLGEGSTFWVMLPLECV 1101 >gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 681 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 147/260 (56%), Gaps = 3/260 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +++ L +L + ++ AE+ NLAKS FL++MSHELRTPLNAILGF++ Sbjct: 268 AAARDVTQQNILDQKLREKNIELERSKIAAEQANLAKSDFLSNMSHELRTPLNAILGFAQ 327 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ E P ET + + +I ++G +L ++INEILDL++IE+G+ + + L +++ Sbjct: 328 LL--EGGTPAPTETQTKRLKEILKAGWYLTDMINEILDLAKIESGQTPMLLEPVLLTNLL 385 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 EC M + A E I++ + + SV AD+ ++QV+ NLLSNA+K+ + G V V Sbjct: 386 FECQSMFEPNALESGIKLLFSMVNRMWSVRADQTKLKQVVSNLLSNAIKYNSEQGTVEVK 445 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++ IS+KDNG G++ ++ + F + + ++G G+GL +++ ++ Sbjct: 446 CSESALGRIRISVKDNGAGLSAEKLAQLFQPFNRLGQEV-GVKEGTGIGLAVSKKLIEMM 504 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GG + S + G E L Sbjct: 505 GGTIGVESAVGVGSEFWIEL 524 >gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573] gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573] Length = 968 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 32/337 (9%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + + +A A + + Q K+ L +E Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440 Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ ++ Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ ++ L +VRE ++ Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-S 397 Q RA EK I + + + ++ W DE + QV+ NL+ N +KFT G V + + Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDLE 615 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G+G +++D+G GIAE + ++ +F Q +QG GLGL I++ ++ GG+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673 Query: 458 IRSKLREGVEVIAILPN---------TRVLNFIPEDN 485 + S+L +G LP R L+ +P + Sbjct: 674 LSSQLGQGSCFSFTLPLDPGQPVDTPARTLDEVPVAD 710 >gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 547 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 30/367 (8%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L+ L +L + V Q+ + + + A S + Sbjct: 39 ALVTLESETGIEIVLLDVMMPGLDGFEVLDILQSNPQLATCRVIMLSARADVDSKVRALA 98 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR--AEEENLAKSRFLASMSHELRT 262 K L ++ +A++ ++ R R AE N AKS FLA+MSHE+RT Sbjct: 99 AGAVDFINKPFDLIELSARLQTQVRLARTEAELARARHEAESANRAKSEFLANMSHEIRT 158 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAI+G E++ + + T +EY+ I SG +L+LI +ILD S+IEAGR EL Sbjct: 159 PLNAIIGIGELLAKTRL----DATQREYVHIIETSGNAMLSLIEDILDYSKIEAGRLELD 214 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + +RE + ++QL+A+EK + I +DP + D RQ+ +NLL NAVK Sbjct: 215 AVRFAPAVCIREAVGLVQLKAREKGLRIDVAVDPGIPGYFLGDSHRFRQIAINLLGNAVK 274 Query: 382 FTAIGGRVHVT------VGWTSGRGQ------------YISIKDNGPGIAEGEIPTVLTS 423 FT GR+ V+ V +G+ + ++++D G GI + Sbjct: 275 FTEQ-GRIGVSLNGHSIVPEDAGQDRTMSQSDEAWYQLVLTVEDTGIGIPPDRQSHIFAK 333 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEV--IAILPNTRVLN 479 F Q + G GLGL I + + GG + S +G + R + Sbjct: 334 FSQVDASTTRRYGGTGLGLAICRQLARLLGGDIEVESAGIPGQGSRFRCTVTMRACRRQH 393 Query: 480 FIPEDNH 486 PED Sbjct: 394 EAPEDQT 400 >gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC 43183] gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC 43183] Length = 624 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ +++ + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 380 ITRLKATEAMLIDAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSSLL----PHIEDA 435 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E YI I+ + + LLN+IN++LDLS+IEAG ELS +L D++ E Q Sbjct: 436 EERNHYISLINHNNELLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVP 495 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + ++ + + + D ++QV+ NL+SNA+K T G V ++ T IS Sbjct: 496 E-GVTLKKRYPATPNLIKQDPMRIKQVLSNLISNALKNTVQ-GYVEISYETTPSET-RIS 552 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F + QG GLGLPI +SIM + G + S + + Sbjct: 553 VSDTGRGIPEEKLGIIFERFEKTDA----FIQGAGLGLPICRSIMEHMNGTIEVTSTVNK 608 Query: 465 GVEVIAILP 473 G + P Sbjct: 609 GSTFTVVFP 617 >gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 885 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 487 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ + Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 658 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 714 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 715 KGTTFTFTLP 724 >gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 788 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 181/471 (38%), Gaps = 18/471 (3%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLF---VLLVANIGTWFTQNPIFPMWSLI 78 + + D + +L +S LPLF L A + P + S+ Sbjct: 34 RYPVPGAAPASHDETLRDSAPNALAGLSGALPLFLISGALGAAALSVAFDTPAALLASVA 93 Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVY-VWRIWLLVGQIAIGL------CWTLLTLVEPGT 131 ++V AA L + S + + W L T Sbjct: 94 GISVVAAMPLLKRPADPSSAADKPGRKPIKANMTPDPDRSKAEHDSDRTWELGEFTSHLT 153 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + L+ +A L I A F L + + +A + A Sbjct: 154 TLFDGLSDMIAACDLEGRIIFANETFRL-AIGTENPVGLTLAQAGVAPTQTDGTGQRELV 212 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + V + A++ E +RAE + AK+R Sbjct: 213 LGEGEAQSVWTWRETIARDPVSGKMFVHCVGRNVTATRKAEAELVEALERAEAASHAKTR 272 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHE+RTPLN ILG + ++ YI + SGQ LL+LI ++LD+ Sbjct: 273 FLATVSHEIRTPLNGILGMTHLLSQT----ETTPEQASYIRNARESGQSLLSLIEDLLDV 328 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 + IEAGR L E L ++V ++ +A EKNIEI I + +D +RQ Sbjct: 329 TSIEAGRLNLREEEGDLSELVHGVCELMASKAHEKNIEIAVHIAVDAPQRIASDIGRVRQ 388 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NL+ NA+KFT GG V V V + S+ D GPG+ E + + F + Sbjct: 389 ILFNLVGNAIKFTESGG-VLVEVSLENA-ALVFSVTDTGPGLKETDKAKIFEEFERADNG 446 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I+ I+ GG+ + S +G + +P + N Sbjct: 447 PTRKHGGAGLGLSISARIVEALGGEIGVDSTPGKGSKFHFSVPIADISNSA 497 >gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI] gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 896 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 GATNISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVIEET 763 >gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 641 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 25/347 (7%) Query: 147 IALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF-- 200 I + +S+ L + S P A+ ++ ++ A + + Sbjct: 141 IGEVVLGMSSARLLARQKEILLASMIPAFFAMILGLWIAHYLARQIAAPLGYLSGLLRTL 200 Query: 201 ----------TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 + + L + I + + + A + + ++AE + AKS Sbjct: 201 RQGEYSVRGNSRLQGELGELQDNINELAGALEGARHKQQAAMTELQQAHRQAETASQAKS 260 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHELRTP+N +LG +++E N +EY S HLL++IN+ILD Sbjct: 261 DFLAMMSHELRTPMNGVLGMLQLLEETA----QNGEQQEYTEAALESTGHLLDVINDILD 316 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGM 368 SRIEAGR +L S L +++ C+ + A+ K + + + D L+ +D + Sbjct: 317 FSRIEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLRLEGDEVLAGKVTRSDPTRL 376 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFG 425 RQV+ NL+SNAVKFT GG V V+V G I++ D G GI E + ++ +F Sbjct: 377 RQVLSNLISNAVKFTQEGGVTVTVSVRPVRGDWLDLSIAVADTGIGIPEAKRSSLFKAFS 436 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + G GLGL IA+ + GG + S+ G L Sbjct: 437 QIDSSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDAGSVFTLSL 483 >gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] Length = 725 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 127/285 (44%), Gaps = 31/285 (10%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 A+ + +A E + + A+E AK+RFLA MSHE+RTPLN + G ++V Sbjct: 121 AREKLAQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQV 180 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + P +E + + S LL +I++ILDLS++EAG +L E ++ DIV+ Sbjct: 181 LATTPLDP----EQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVK 236 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + ++++ I I I + V+ D ++QVI NL+ NAVKFT G V V Sbjct: 237 HVVRTAIAASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRK-GHVKVR 295 Query: 393 VGW-------------------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + + I+D G GI + +PT+ F Sbjct: 296 LHIAKFPIDERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLV 355 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I + ++ G + SK+ +G + Sbjct: 356 HSSTTRKYGGTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTI 400 >gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1130 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 2/281 (0%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + L +N ++ + Q+E + + AELE + + + E + K+ F Sbjct: 575 LVQQARELEALNTELAATNEELEAQQSELEAINAELEQQRLQIESQNQELVEADRQKNNF 634 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LASMSHELRTPLNAI+GFS+++ + + + ++++G+ L L+N+ILDL+ Sbjct: 635 LASMSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLLQ-LDRVYQNGKIQLRLVNDILDLA 693 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +I+AG+ EL ++L VRE L+ A +KN+ + +DPS+ SV D + +R ++ Sbjct: 694 KIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDPSIGSVETDPQQLRTIL 753 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NLLSNA K+T G V V + + ++D G GI + V F + A Sbjct: 754 INLLSNAFKYTER-GEVEVRARRPAADRFELEVRDTGVGIDPDQQQKVFDEFSRLEGAAT 812 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + ++ GG+ + S G LP Sbjct: 813 RQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853 >gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] Length = 1755 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 146/308 (47%), Gaps = 10/308 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 +A A+ V D + + + + + I + Sbjct: 944 ATMASLQVALDGRGVYDPVFRVVHPDGQIRYVQAAGKVGRDAKGRAVSFVGINQDITIRK 1003 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ + R++AE+ N+AKS+FLA+MSHE+RTP+NA+LG +++ + ++ Sbjct: 1004 QFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQLDT----RQQD 1059 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ + Q LL L+N+ILD S+I+AG+ EL A SL D++RE ++L K +E Sbjct: 1060 YVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQHHKTVE 1119 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404 + ++DPSL V D+ + Q+++NL NA+KFT G+V + + +S Sbjct: 1120 LMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEA-GQVVIHLSALRQDAASVTLQVS 1178 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI ++ + F Q + G GLGL I Q ++A G + + S+ Sbjct: 1179 VTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPGR 1238 Query: 465 GVEVIAIL 472 G L Sbjct: 1239 GSCFSFEL 1246 >gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 629 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ + ++ L D ++RAEE + KS FLA+MSHE+RTPLNAI+GFSE+I L Sbjct: 247 DIGDRIRRSQELLD-AKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEIIALT----E 301 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +EY+G I ++ LL LIN+ILDLSRIE+G+ E+ + + E + +L+ Sbjct: 302 DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLK 361 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ +E+ + D + QV+ N LSNA+K T G + + Sbjct: 362 MKK-GVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE-GSITFGL-VKEEEWVK 418 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI++ ++P + T F + QG GLGLPI +SI+ GG+ + S+L Sbjct: 419 FYVADTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESEL 474 Query: 463 REGVEVIAILPNTR 476 +G LPN + Sbjct: 475 EKGSTFTLYLPNKQ 488 >gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM 17244] gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM 17244] Length = 1210 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 8/281 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + + I+ ++ +E ++ K+A N AKS FL+ Sbjct: 647 WIEATAIFNSGQNRNRINLIIRDITDQIKQEELIEAQNRALEKALKKANAANEAKSLFLS 706 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SMSH++RTP+N I+G + V + N + K+ + I S +HLL+LIN+ILD+SRI Sbjct: 707 SMSHDIRTPMNGIVGMTTVAKESI---KNEDRIKDCLDKIDVSSKHLLSLINDILDMSRI 763 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E+G L E +++ D+ + + ++ +A+EKN I ID ++ D ++QV +N Sbjct: 764 ESGNLILKEENVNISDLFHDTLTIILSQAKEKNQNIRFDIDVEHENIIVDSLRLQQVFIN 823 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 +LSNA+KFT G + + + Q D+G GI++ I + F + + Sbjct: 824 ILSNAIKFTEYNGNIDINIYELPQTKQGYADYKFEFIDDGIGISKEFIDNIFEPFERENK 883 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + QG GLG+ I + I+ GG+ L+RS+L +G Sbjct: 884 EMSGKIQGTGLGMTITKRILDMMGGKILVRSELGKGTCFTV 924 >gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 604 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 136/275 (49%), Gaps = 10/275 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++ + + L E E+++SL E ++ AE AK +FLA+MSHELRT Sbjct: 176 VLWMAKEATEAAILAKETAKALRLEKEISESLRRE-KEAAESATRAKDQFLANMSHELRT 234 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+ +LG ++ E + P T + Y+G H S LL ++N+ILD+++IEAG+ + Sbjct: 235 PMTGVLGMLQLALEEELAP----TLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIIIE 290 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 E S V + ++ + K ++I + + + D+ +RQV++NL++NAVK Sbjct: 291 EMPFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEVPDKLVGDQMRLRQVLINLIANAVK 350 Query: 382 FTAIGGR-VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G V VT G T+ G+ ++ D G GI E + + F Q + G Sbjct: 351 FTNEGKVAVQVTAGGTNSDGKREYTFAVTDTGIGIPEDKKDLLFHVFSQVDASHTRTYGG 410 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I + ++ GG SK G + Sbjct: 411 TGLGLAICKELVELMGGMIDFDSKEGVGSTFYFTI 445 >gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 503 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 11/299 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSC----QAEKDDLIAELE--VAKSLSDET 238 + I++ F IT L N +++ D+ +E E + Sbjct: 203 ISIAILVSALLVYIFSLKITKPLKLINNAAREIANGEFSKRLDISSEDEIGQLAESFNHM 262 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 E + F+A++SHELRTP+ +I GF E I G + E +EY+ + Sbjct: 263 AVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILD---GTIPPEREREYLSIVSDET 319 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L L N++LDL+R+E+G +L+ + +++R CII L+ + KNI+I Sbjct: 320 KRLSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEA 379 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + V+AD+ + +V+LNLL NAVKF GG++ + S +S+KDNG GI EI Sbjct: 380 AHVYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEM-SKGKVMVSVKDNGAGIDSEEIG 438 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-PNTR 476 + F + + + G GLGL I ++I+ HG + + S++ +G L P Sbjct: 439 LIWDRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVESEIGKGTVFYFTLNPAKE 497 >gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 632 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + E E++ I + Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LI++ILDL++IE+G + + +++ +++ E + +++ + N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPE 505 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++D + QVI N L+NA+K+T+ G + + G S+ D G G+++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F +G + +QG GLGL I ++I+ GG+ + S+L +G P Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614 >gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 522 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E + + + A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ Sbjct: 276 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 333 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + Sbjct: 334 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKKNFDFKEICEETYAVHALKIPK- 390 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 N+ +V++D K + QVI N L+NA+KFT+ G + + S +S+ Sbjct: 391 NVRFVFDRGSQPVTVFSDPKRVIQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 448 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI++ + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 449 DTGMGISDDDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 504 Query: 467 EVIAILPNTRVLNFIPE 483 LP + P+ Sbjct: 505 TFWFTLPLKEIKENEPK 521 >gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 957 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G ++++ + N +EY+ + S Q+LL+L+N+I Sbjct: 580 KSEFLANMSHEIRTPMNGVIGMVQLLQFTRL----NSEQQEYLQCLETSAQNLLSLLNDI 635 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKG 367 LDLS+IEAG+ L + SL ++E + + +K +++ + + + D Sbjct: 636 LDLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLR 695 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423 ++Q++LNLL NA+KFTA G + + T + +S+ D G G+ + + Sbjct: 696 LKQILLNLLGNAIKFTAA-GSITIAARITDQQNGTLTICLSVSDTGIGMTPEALQRIFAP 754 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q + G GLGL I + + GG+ S G LP + P Sbjct: 755 FEQADNSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFFVELPFAVRMQTAPA 814 Query: 484 DNH 486 Sbjct: 815 AAP 817 >gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 885 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 136/230 (59%), Gaps = 6/230 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN--ETYKEYIGDIHRSGQHLLN 303 N +KS FLA MSHELRTPLNAILGF++++ + + + ++E++ I RSG+HLLN Sbjct: 410 NRSKSEFLARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLN 469 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 LIN++L++S+IEAG+ L+ + L+ ++ ML+L+AQ K +++ +ID + + Sbjct: 470 LINDVLEMSKIEAGQISLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQ 529 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 DE +RQV++NLL NA+KFT G + TV + ++D G GI+ E+ V Sbjct: 530 TDESKLRQVLINLLGNAIKFTDAGCIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYV 589 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 F Q KS QG GLGL I+Q + GG+ + S+L +G Sbjct: 590 FKPFIQTETGRKSQ-QGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRF 638 >gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 628 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 6/293 (2%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A +++ + + + + + + +I E A R E + K FL Sbjct: 198 AGSVTSVLSLVLDVTERIQAEKALRQSELMVIEERAQALERERAARIELERASRMKDEFL 257 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A +SHELR+PLN ILG+S ++ + P E ++ + I R+ Q LI ++LD+SR Sbjct: 258 AIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERNAQAQTQLIEDLLDISR 314 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 I G L LI +++ + ++ A K+I+I +++ + V AD + ++QVI Sbjct: 315 IIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIW 374 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NLLSNAVKFT GGRV + + I + D G GI+ +P V F Q Sbjct: 375 NLLSNAVKFTPEGGRVEICLEQVETN-VQIRVTDTGKGISPEFLPYVFDRFRQADATTTR 433 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI-PED 484 + G+GLGL I ++++ H G + S +G LP + + PE+ Sbjct: 434 NQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLPLLPSYSTVTPEE 486 >gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4] Length = 734 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 322 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 381 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 382 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 496 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 557 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 597 >gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] Length = 810 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ + +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 664 VDVNETCTEIIKSMSMKVSK-GVELIFEEPLLECYLYTDKNRFTQVISNFINNALKFTQQ 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + ++ F + + QG GLGL I Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKL----NTFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805 >gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 800 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 21/282 (7%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + + L + A+ E R+ A+EEN AKS FLA+MSHE+RTP+N I+GF+E+++ Sbjct: 114 YRKAFELLQEIVRQAR----EDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKS 169 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N+ +E+ I +S +LLN+IN ILDLS+IE+ + E+ + I Sbjct: 170 TPL----NDEQQEFANIIEKSSHNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTI 225 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + A E +IE++ IDPS+S + D +++++ NLL+NAVKFT GG + V + Sbjct: 226 DNFGVVAAENDIELYYFIDPSISSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEK 285 Query: 396 TSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D G G+++ +I + F Q +I G GLGL I + + Sbjct: 286 LEATQGDRSLIEFRVIDTGIGMSQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVE 345 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG+ L+ S+ +G LP + + E T Y+ Sbjct: 346 LMGGKLLVESEEGKGSTFSFTLPLEEIRD-------EETDYR 380 >gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 576 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 24/276 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNAI+GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 SDA-QRGYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + D + D + +Q++ NLL+NAVKF+A GG V ++V Sbjct: 409 AALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VLEGDWPTHVFPVPPGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLAELHGGSVAVASVKDLGARFVVWLPIR 564 >gi|222056857|ref|YP_002539219.1| histidine kinase [Geobacter sp. FRC-32] gi|221566146|gb|ACM22118.1| histidine kinase [Geobacter sp. FRC-32] Length = 500 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 97/479 (20%), Positives = 177/479 (36%), Gaps = 47/479 (9%) Query: 33 FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPMWSLITLAVYAANLS 88 + EI+ V+ ++ ++PI + + I + ++ + +W + L++ A L Sbjct: 19 YREEILAEQVKQIYALAPIGFIATFFNSVIVFFLMKDVMEFRLLVLWGVTLLSITALRLG 78 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 L + N + WR +V G W + G T + + Sbjct: 79 LVLRFRNVKQHLNFAATWRRRFVVSLFIAGAAWGWIGFFPFGEITIAHQVFIAFVLGGMT 138 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 S+ + M+ + P + L+ + V ++ ML I+ H + Sbjct: 139 AGASSTFS-MIKEGYAVFSIPALTPLAIHFFLMKDVFHCAMGTMLVLFGVLLWRISIHNY 197 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSD----------ETRKRAEE-------------- 244 + N L + E +I L+ AK + E + RAE Sbjct: 198 RVNRTSLLLRFENKGMIERLKQAKERVEGLNDRLSAEVEAKHRAEADLRAHHDQLERAVT 257 Query: 245 --------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 N +F SH+L+ PL ++ + ++++ + G L+ E YIG Sbjct: 258 ERTADLTTLNKELEQFAYVASHDLQEPLRMVISYLQLLKQKYHGQLD-EKADMYIGFAVD 316 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 G + LI +L SR+ G + + + I + L +E E+ + Sbjct: 317 GGIRMQRLIEGLLSYSRLSRGA---EFTRVDINGIFAAAVANLAGVIEESGAEVTRAH-- 371 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEG 415 L +V DE ++Q++ NL+SN +K+ R V V G S++DNG GI Sbjct: 372 -LPTVIGDELQLQQLLQNLISNGLKYRKPERRPTVHVSAERQGEEWLFSVRDNGIGIDPN 430 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + + G G+GL + Q I+ HGG + S EG +P Sbjct: 431 HFDKIFQIFQRLHTSE--EYPGTGIGLALCQKIIERHGGAIWVESTFGEGSTFSFTIPV 487 >gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1308 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 150/325 (46%), Gaps = 24/325 (7%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + V + + A + K + I + + A+ Sbjct: 775 RFKQRGWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQ 834 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + +K A N AKS FLA+MSHELRTPLNAILGF++++ + E + I+R Sbjct: 835 KAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGR---DHCLRPEHLERLQIINR 891 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG+HLL LI++ILDLS+IE G+ + L ++ MLQ +A+ + + + + Sbjct: 892 SGEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSF 951 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPG 411 L + DEK +RQV++NLL+NA+KFT G V + V + + ++D G G Sbjct: 952 DLPQYIKTDEKKLRQVLINLLNNAIKFTQE-GTVILRVKPKAAENTPQRLVFEVEDTGVG 1010 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA- 470 +A +I + F Q A K QG GLGL I+Q + GG+ ++S L +G Sbjct: 1011 MAPDDIDQLFKVFVQAE-AGKKLNQGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFE 1069 Query: 471 -------------ILPNTRVLNFIP 482 LP +V+ P Sbjct: 1070 IEVELASGDYFQEELPAQKVVGLAP 1094 >gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 814 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 101/265 (38%), Positives = 158/265 (59%), Gaps = 2/265 (0%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + V++ Q E + + L+DE RK+A+E N +KS+FLA+MSHELRTPLNAI+G Sbjct: 524 TIVELRKMQQNLVAFANEADDQRLLADEQRKQADEANKSKSQFLANMSHELRTPLNAIIG 583 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FS+++ GPL NE Y EY DI SG LL +IN++LD+S+IEAGR ++ +++ Sbjct: 584 FSDIMREGMFGPLGNEKYTEYANDIRSSGGFLLGVINDVLDMSKIEAGRMQIYPEELAVS 643 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 D+++E + ++ +A + +++ +I+ L + AD + ++QV++NLLSNAVKFT GG + Sbjct: 644 DLLQETLRIIAAQADDGELQVTTEIETGL-DIIADRRAVKQVLINLLSNAVKFTPKGGSI 702 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V+ + I D+G GI++ + + F Q + + G GLGL IA+S+ Sbjct: 703 QVSARRLDDN-VEMEILDSGIGISQDALERIGLPFEQAASELTRDHVGSGLGLAIAKSLA 761 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG I S G V+ LP Sbjct: 762 ELHGGSVDISSIEGIGTTVLVRLPL 786 >gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] Length = 960 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 6/241 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E KS ++++SHELRTPL++ILGF+E++ + P E ++Y+ IH+ L N Sbjct: 577 EVEQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKP---EKQEKYLKTIHKEANRLTN 633 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LDL R+E+G + ++ + D++ E + + +++ + + ++ + Sbjct: 634 LINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSEKHTLHFINLAEKTI--IQG 691 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + ++QVI N++SNA+KF+ GG + T+ ++ ++S+KD+G GI E E+ + Sbjct: 692 DSERIQQVITNIISNAIKFSPNGGDITTTLA-SNSTSLFVSVKDDGLGIPENEMKNLFRK 750 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + + + G GLGLPI + I+ H G + SK EG I LP + Sbjct: 751 FYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVESKENEGSTFIIELPLNDCSQTLKA 810 Query: 484 D 484 + Sbjct: 811 E 811 >gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1012 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 16/312 (5%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + ++ I+ + ++ I+ + A+ + ++ Sbjct: 510 QGNAVGKTIELSAIGKDGLEIPISLSMSSVLLQGRWHAVGIARDISRRKAAEKELIQAKE 569 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE N+AKS+FLA+MSHELRTP N I+G ++++ + N+ +E++ +S + Sbjct: 570 QAEAANIAKSKFLANMSHELRTPFNGIMGMMQLLQTTDL----NDEQQEFVNLAIQSSER 625 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + L+ +IL+LS IEAG+ + + +++ + A +K I + ++P + Sbjct: 626 FVRLLTDILELSNIEAGKMSICSAEFRTGELLESLSDLFSAEALKKGIVLEFSMEPDVPE 685 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAE 414 V D+ ++QV+ L+ NA+KFT G V V + S S+ D G GI + Sbjct: 686 QVSGDKTRVKQVMFTLVGNALKFT-ESGSVQVHLTSISGAKGGDTRLKFSVSDTGIGIPD 744 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ T+ F Q + QG GLGL + + ++ G + S++ G V +LP Sbjct: 745 DKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDMMNGNISVESEVDRGTTVHVVLPF 804 Query: 475 TRVLNFIPEDNH 486 +P +H Sbjct: 805 -----TLPAVDH 811 >gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 949 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 96/429 (22%), Positives = 177/429 (41%), Gaps = 15/429 (3%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 ++ + F L+ + + + + L+ Sbjct: 4 IARLRTGFGRLLVPLLWLHVPLLAAIAFYVGKPVLMPVLLAGLFAATTHLSWHFTGSAPV 63 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEY-LTIYKSATLLIALSISALSNFMLPYAVFLS 166 L +G L+ L +W + + + + LLIA + Sbjct: 64 TRYLSSVALMGEPALLVYLTSGLSWQMDMHMYFFATLALLIAWFDAPSLLLAATAIALHH 123 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + + + L + + L + K+++ +++ Sbjct: 124 LVLNYTVPAAVFVNDAGINRVLLHAGIVIFQTTV------LIWLSNKLVNAFERIENMGH 177 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 L V + + AE+ N AKS FLA+MSHE+RTP+NAILGFS ++ + Sbjct: 178 VLTVQNETLEVRTREAEQANAAKSLFLANMSHEIRTPMNAILGFSHLLGRTELTA----R 233 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +Y+ I + LL+L+ +ILD S+IEAG+ L +++ ++ + + L+AQEK Sbjct: 234 QHDYVTKIRGASDRLLSLLKDILDFSKIEAGKMALEKASFDPRAMIERTMELSTLKAQEK 293 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS 404 I I ++DP++ + DE + QV+LNL+SNA+KFT+ G + + + I Sbjct: 294 GIAIGWQVDPAIPAMLRGDELRLSQVVLNLVSNAIKFTSSGEVTLKLNLREHQDSRCVIE 353 Query: 405 --IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++D G G++ G++ + SF Q + G GLGL I++ ++A G + SK Sbjct: 354 GVVRDTGLGMSSGQVARLFDSFTQADSSTTRRFGGTGLGLAISRQLVALMDGGISVESKE 413 Query: 463 REGVEVIAI 471 G Sbjct: 414 GHGSTFTFT 422 >gi|254224966|ref|ZP_04918581.1| sensor histidine kinase [Vibrio cholerae V51] gi|125622654|gb|EAZ50973.1| sensor histidine kinase [Vibrio cholerae V51] Length = 736 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + P ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTP----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT + G V V + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEIADGRWYYGDKARLRQIIFNLLSNAVKFTEV-GFVAVGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCGDENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGSVLVQSEVGKGSCFNVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|332142599|ref|YP_004428337.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 891 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 17/299 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + N + E + ++LE E++ +AE+ +KS FLA+M Sbjct: 341 IGKLAKAALVFSDKNRQTEKLLDESRSMNSQLEGLNKALTESKIKAEKATASKSIFLANM 400 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N I+G E+ + + + P T + Y+ SGQ L+++IN+ILD S+IEA Sbjct: 401 SHEIRTPMNGIIGLIELAQQQELSP----TVRGYLDKAAYSGQILISVINDILDFSKIEA 456 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ ++ E + SL + I ++ LRA+EKN+ + ++P L V D + Q+I+N+ Sbjct: 457 GKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFNVNPMLPPQVIGDPLRIAQIIMNI 516 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +NAVKFT GR+ + T + I D+G G+++ ++ + F Q + Sbjct: 517 GNNAVKFTEQ-GRIEIAFDGTLNEKGNRLNLTMRITDSGIGMSKAQLDKIFKPFTQADGS 575 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------VLNFIPE 483 G GLGL I + G+ S + +G LP VL P+ Sbjct: 576 TNRKYGGTGLGLAIVSQLTELMNGRIDASSTMGKGSTFEVNLPLRAFKNQPGVLEQTPQ 634 >gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1376 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 13/308 (4%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 A V I +A A S + + +++ E AEL+ + + +E Sbjct: 871 AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAMQLQERSDELQMQQAELQRSNAELEE 930 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN++L + ++ G L+++ + + IHRS Sbjct: 931 KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 989 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL LIN+ILDLS+IEAGR ++ + LI ++ + ++ + + Sbjct: 990 GSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLDRGLAFEVAVGED 1049 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIK 406 + +++DE+ ++Q++ NLLSNA+KFTA GRV + V S ++ Sbjct: 1050 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELRVNRIKDPDHRYVRDSDDVVAFAVS 1108 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA ++P + +F Q G GLGL I++ I GG+ + S+ G Sbjct: 1109 DTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAESEPGRGS 1168 Query: 467 EVIAILPN 474 +P Sbjct: 1169 TFTLYVPV 1176 >gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3] gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3] Length = 736 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1127 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 16/277 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L K N + L + + +EL R AE + +KS FLA+MSHE+RTP Sbjct: 487 ANQLLKQNNEALEQRVAER--TSELTRLNEELARARDTAEGASRSKSEFLANMSHEIRTP 544 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +NAILG + + +EY+ + S Q LL +IN+ILD+S+IEAGR ++ + Sbjct: 545 MNAILGLVHLALQTDLSH----KQREYLDTVSNSAQSLLGIINDILDVSKIEAGRLQIEK 600 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 + SL +V + +L ++A+EK I + Q++D S+ ++ D + QV++NLL NAVKF Sbjct: 601 TNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDALVGDPLRLEQVLVNLLGNAVKF 660 Query: 383 TAIGGRVHVTVGW--------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 T G V + + + ISI D G G+ E + + F QG + Sbjct: 661 TDS-GTVTLQIRRGTEPRDSDSDEITLEISITDTGAGMDEQTLGRLFKPFSQGDTSTTRT 719 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + ++ GG + S +G Sbjct: 720 HGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFS 756 >gi|284988897|ref|YP_003407451.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284062142|gb|ADB73080.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 957 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 98/421 (23%), Positives = 163/421 (38%), Gaps = 29/421 (6%) Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147 G+ + W +L GQ A+G L L+ ++ A Sbjct: 135 LAGRLAELTAAHQRWTQDWVRPMLAGQPAVGDAVALAELLRQDKALFDHYRA-IEAQARA 193 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT------ 201 A+ L + V V + + L + Sbjct: 194 AVGERRAGAMALQQLALYAGALVGVGTAAAVAAVLRGAYRRLEAQVVPPTQEVRDALAAL 253 Query: 202 -----------YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 + L + + + + + + R AE AK+ Sbjct: 254 AAGDLTRRAGESGSAELRRIAADVNALGDALQERNELVATRERDLVAARDEAERAGQAKT 313 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTPLNA+LG ++V+ + + + ++ + SG LL+LIN+ILD Sbjct: 314 AFLATMSHEIRTPLNAVLGLTDVLLATDL----TDEQRGHLETVAGSGDSLLSLINDILD 369 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 S+IEAG +L + L+ +V + +L A +++ + V D R Sbjct: 370 FSKIEAGELDLEAAPFDLVGVVYDVAQLLAPTASGAGLDLLVDVAGDGPWQVVGDGSRFR 429 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQ 426 QV+ NL+ NAVKFT+ G V + + T+ G+ +S+ D G GI+ + + SF Q Sbjct: 430 QVVTNLVGNAVKFTSE-GHVVLRLTGTAAEGRLQCRLSVVDTGIGISPDQRHRLFRSFSQ 488 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPED 484 ++ + G GLGL I+Q I GG + S+L G LP + P Sbjct: 489 VDASVTRSYGGTGLGLAISQRIARAMGGDIQVHSELGVGSTFTVALDLPLAPAVPDDPSA 548 Query: 485 N 485 + Sbjct: 549 D 549 >gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1106 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 28/293 (9%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I + K + I + + A+ + A+ + AKS FLA+MSHELRT Sbjct: 587 IEASISKLELGNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLANMSHELRT 646 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILG++++++ ++ +G I + G HLL LIN+ILDLS+IEA + EL Sbjct: 647 PLNGILGYAQILQR---DKNITPQQRKGLGVIKQCGSHLLTLINDILDLSKIEAQKLELH 703 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 + + + + ++RA++KNI + L + ADEK +RQV++NL+SNA+K Sbjct: 704 PTDFDFLTFLCGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINLISNAIK 763 Query: 382 FTAIGGRVHVTVGWTSGRGQYIS----------------------IKDNGPGIAEGEIPT 419 FT G V T + ++D G GI +I Sbjct: 764 FTDT-GCVIFTTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEK 822 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q +G GLGL I Q I++ G + S + +G + L Sbjct: 823 IFIPFEQVGD-RFRKAEGTGLGLAITQKIVSMMGSTLNVESVVGKGSKFWVDL 874 >gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 396 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 2/255 (0%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + A+ A+ N +KS FLA++SHELRTPLN+I+GFSE++ G Sbjct: 144 ALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVSHELRTPLNSIVGFSEILLDGRCG 203 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L N+ + Y+ ++ +G HL +INEIL++S+IEAG+ E++ ++ V E L Sbjct: 204 GL-NDVQRRYVQNVSNNGNHLSEIINEILEISKIEAGKAEVNLEDFCILPSVMEVKESLM 262 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 KNI ++P L + D+ + ++ +LL NAVKFT+ G V + S Sbjct: 263 HSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLINAVKFTSDHGSVGIHASAISD-M 321 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I I D+G GI ++P + F Q + K G GLGL + + ++ + GQ + S Sbjct: 322 MHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGGTGLGLALTKKLVILNSGQMWVES 381 Query: 461 KLREGVEVIAILPNT 475 ++ G +V +LP Sbjct: 382 EVNVGTKVHMMLPLA 396 >gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 696 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 14/290 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I L + + D+ LE + ++ AE AKS FLA MSHE+RT Sbjct: 276 IVDRLIRWEDGRRVRLSIAMDVTDVLEAQRE-----KELAEAATRAKSEFLARMSHEIRT 330 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ILG + + + +EY+ I S + LL +IN+ILD S+IEAG+ ++S Sbjct: 331 PMNGILGMTYLALDD----NPAPRQREYLRKIRLSAKSLLGIINDILDFSKIEAGKLDIS 386 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 E +L ++V+ ML + EK + + + + D + +V++NLL NA+K Sbjct: 387 EEDFALDELVQNLRAMLSAQVHEKQLSFSVNLARDVPLWLRGDALRITEVLINLLGNALK 446 Query: 382 FTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT+ GG + + VG G ++D G GI+ GE+ + F Q +I G Sbjct: 447 FTSQGG-ISLDVGTDCRDGAVFLHFMVRDTGIGISAGELENLFQPFTQADSSISRRFGGT 505 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 GLGL I++ + G+ S+ +G +LP P + ES Sbjct: 506 GLGLAISRQLARLMDGKLWCESEPGKGSVFHFLLPLALAAQARPGPDAES 555 >gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 477 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 6/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F+A++SHELRTPL +I GF E + + + + + ++ I+ Q Sbjct: 246 RRLE---QMRTEFVANVSHELRTPLTSIKGFVETLLDGALD--DTKVARRFLSIINEETQ 300 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LI ++L LSRIE+ + E L ++ +L+ A +K I + ++ +L Sbjct: 301 RLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQVDVETNLP 360 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++QV++NL NA+K+T GG+V V + ++D G GI E +P Sbjct: 361 LLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATR-GCDSVILEVQDTGIGIPEESLPR 419 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F + A G GLGL I + I+ GG+ ++SK+ G P Sbjct: 420 IFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFPVAE 476 >gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 575 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 174/370 (47%), Gaps = 13/370 (3%) Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 + +G ++ + P + + L AL + L+ V V+ Sbjct: 165 DLELGGLIGIVNIRFPSQKVEQAQNWNNAINLASALVTAVLAMLAAYAIVRYVIVKPVLH 224 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + H A + F ++Y + +++ Q E + +L+ Sbjct: 225 LKDVSDEIAHGNLDLRADIRTG--DEFEELSYAFNRMLRHLVTVQEELRTVNTDLDTKVD 282 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + R E N K FLA+MSHELRTPLN+ILGFS+++ NE K Y+ + Sbjct: 283 ELAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLAN---SKDLNEKQKRYVSN 339 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SG++LL IN++LDL++IE+G+ EL S I++ D++ + + A +KNIE+ + Sbjct: 340 IQMSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSE 399 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--ISIKDNGPG 411 IDP + ++ D ++Q++ NLLSNA+KFT GGRVHV + + ++D G G Sbjct: 400 IDPKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHVAARLCGENPKLMDLIVEDTGIG 459 Query: 412 IAEGEIPTVLTSFGQGSIA------IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 I E + F QG + + + +G GLGL I + + G+ + S+ G Sbjct: 460 IPLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRG 519 Query: 466 VEVIAILPNT 475 + A LP Sbjct: 520 SKFTARLPVR 529 >gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2] Length = 771 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 117/294 (39%), Positives = 158/294 (53%), Gaps = 12/294 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240 G + T I H K L +A DL A L+D RK Sbjct: 471 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKISQYKLERQAIELADLARKYSEEKT 530 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAEE N KS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 531 RAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHY 590 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR L + L + E + ++ RA+ K +E+ +I+ + Sbjct: 591 LLEVINDILDMSKIEAGRMRLDMEELDLARTLGESLKVVAGRAEHKQLELLSEIEDDIPI 650 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GGRV V T + I D+G GIA + + Sbjct: 651 V-ADRRAVKQILINLLSNAVKFTPDGGRVTVR-SRTLPNAIVLMIADSGIGIAPQSLRRL 708 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + G GLGL IA+S+ HGG +RS L G V+ LP Sbjct: 709 GQPFEQVESQLSKTYHGSGLGLAIAKSLTTLHGGSMRLRSTLGAGTVVMVTLPR 762 >gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 902 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 12/282 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + ++ + + DL + E A+ + + AE N AKS FLA+MSHE Sbjct: 465 VVFSSHAIVEKAGGEPELFCVDIDLTSRKE-AEEALLKLKDAAEAANQAKSEFLANMSHE 523 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N ++G +++E + + YI + L L+ +ILDLSR+EAG+ Sbjct: 524 IRTPINGVMGMLQLLETTPL----DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKM 579 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378 E+ E+ + DI+ + + A+ K + + ++ P + + DE +RQV+ NL+ N Sbjct: 580 EIREAPFHIQDIIDSVTGLFAVTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGN 639 Query: 379 AVKFTAIGGRVH-----VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A+KFT GRV ++ ++ + D G GIAE + + F Q + Sbjct: 640 ALKFTER-GRVEMDISALSAKDEDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTR 698 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL I ++A G I S EG V +LP Sbjct: 699 NYQGAGLGLSIVHRLVALMAGTISIESAPGEGTSVHVVLPLR 740 >gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum gilvum SL003B-26A1] gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum gilvum SL003B-26A1] Length = 787 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 103/276 (37%), Positives = 157/276 (56%), Gaps = 5/276 (1%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSH 258 + + + + + L + + L++ + + AE N AKS FLA++SH Sbjct: 500 RLLDSERRLMATVSDLRKSRQTLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISH 559 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAI+GFS++++ GP+ +E Y EY DIH SG +LLN+IN+ILD+S+IEAGR Sbjct: 560 ELRTPLNAIIGFSDIMDRGMFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGR 619 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 E++ + + +V E +++ AQEK IE+ +++P L +V AD + ++QV+LNLLSN Sbjct: 620 MEMTVKPLGVEAVVEEAGRIIRAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSN 678 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 VKFT G V ++V +G I D G GI + ++ + F Q +G Sbjct: 679 GVKFTPEKGTVRLSVHR-AGGLARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGS 737 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL IA+S++ GG I S +G V LP Sbjct: 738 GLGLAIARSLVELQGGTLTIASVPGQGTRVAFTLPL 773 >gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80] gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80] Length = 736 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 820 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 422 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ + Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 593 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 649 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 650 KGTTFTFTLP 659 >gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] Length = 651 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 10/362 (2%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + ++ ++I L + + F+L + P+ Q Sbjct: 289 IGVGAPTYLFADLGYNDLLF---IVMITLFLIFIGAFVLRVLCYRITAPLH---KLQKFS 342 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIAELEVAKSLSDETR 239 D + + F L + + + AE L ++ T Sbjct: 343 RSIAKDSTPPNNIFWDNWFVPIEIQELSEDLLTMSQKLIAENLILEERVQERTQYLIHTI 402 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + EE N KS FLA+MSHELRTPLN+I+GF+ ++ E G L NE K+YI I SG Sbjct: 403 EELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGEL-NEKQKQYIFVILDSGN 461 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LI++IL +++ +S +++ DI+ + + Q K+ ++ I P + Sbjct: 462 HLLALIDDILHFVKLDRHVETISLKEVNVNDIIENVSMSVMPLVQSKDQKLVIDIKPEDT 521 Query: 360 SVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + A D + +RQ++LN+LSNA+KFT + + + +IS+ DNG GI + Sbjct: 522 GLTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFRPANEAAYFISVIDNGIGIEDEFK 581 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 V F Q + + QGVGLGL I + ++ H G+ + G+ V +LP Sbjct: 582 KKVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQGRIWLEDNPSGGLIVHVVLPVRPS 641 Query: 478 LN 479 ++ Sbjct: 642 VS 643 >gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 1131 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 40 LHVESLFRVSPILPLFVL-LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKK-VMNSD 97 + ++L +P + L +V+ + W T + + T + +A ++ ++ D Sbjct: 454 VFGDALQPYAPFVALAAAFIVSPLIAWITHGRYYLVRPNETASAHATTCAICEREYEAED 513 Query: 98 IKIGEVYVWRIWLLVGQI------------AIGLCWTLL--------TLVEPGTWTPEYL 137 + Y I L + +G W + L T YL Sbjct: 514 MAHCPAYQGPICSLCCSLDARCHDLCKPQAHLGAQWNAVLRRILPKAALPYLDTGLGHYL 573 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + ++AL + L L S P VVA + + + ML+ + Sbjct: 574 LLMTGIVPVLALILGVLYTHELL--ALGSPEPAVVA----RLQDSFIKTFAALLMLSGVI 627 Query: 198 SFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 +++ +T + + + Q + I + + + + AE+ N AKSR++ ++ Sbjct: 628 AWWMVLTQESRRVAQEESNRQTQLLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAI 687 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+ILG+++++ + P + + I +SG HLL++I LD++RIE Sbjct: 688 SHELRTPLNSILGYAQILAADEDIP---PNRLQAVSVIRKSGDHLLSVIEGTLDIARIEG 744 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ L A+ +++++ + M +L+A+ K + + L V ADEK +RQ+++N+ Sbjct: 745 GKLTLDVKAMDFPELMQQIVGMFELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINV 804 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 + NAVKFT GG V V I+D GPGI ++ + F +GS Sbjct: 805 IGNAVKFTVRGG-VSFKVECRRD-MAIFEIRDTGPGIPAADLERIFEPFTRGS---TVQA 859 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G G+GL IA+ + GG+ + S EG L Sbjct: 860 GGSGVGLTIARMLTDLMGGEMQVSSTAGEGTLFRIRL 896 >gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B] gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B] Length = 895 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 22/370 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVLVLILWRVVYLSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L+ A +E RK+AE+ Sbjct: 407 AQALKVVAEGEAQAKRELEEHKEHLEELVEQRTSQLKQANRRLNEEVLNHAKARKQAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GIA+ T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQRTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q + G GLGL I++ I+ GG + S+ G +P P Sbjct: 643 FTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLE---ESEPI 698 Query: 484 DNHESTQYKC 493 + +C Sbjct: 699 ETGTVATARC 708 >gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1] gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1] Length = 832 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 145/343 (42%), Gaps = 23/343 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +++ S ++ F + F +++L A S V + AT L + L Sbjct: 186 SMASSKSASQTSFVLFFGTLFAALISLFVAAWSSKRVKQRMDTLLSATQLVAKGQLQNGL 245 Query: 208 FKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR--------------F 252 N L + E L + + ++ +E N F Sbjct: 246 ETLNRSRHLKGRDEFAMLTSSFRDMAFNLLKNDQKMKEYNQRLRDESDRAEAAAKAKSEF 305 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 L++MSHE+RTP+N ++G + ++ + +E S + LL++IN+ILD S Sbjct: 306 LSTMSHEIRTPMNGVIGMTNLLLDTKL----DEQQIRMTETTKNSAESLLSIINDILDFS 361 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371 +IEAG+ +L L ++V + ML A++K I++ P + D +RQV Sbjct: 362 KIEAGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLVCPATPVMDLCYRGDPGRIRQV 421 Query: 372 ILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 + NL+SNA+KFT G V V + I+D G GI+E + + + F Q Sbjct: 422 LNNLVSNAIKFTEDGEVAVYVTVDEKRLTDSILRFEIRDTGIGISEEQQQKLFSRFSQAD 481 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I++ + GG+ + S+ +G Sbjct: 482 SSTTRKYGGTGLGLSISKRLTEIMGGEIGVTSETGKGSTFWFT 524 >gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 805 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 167/382 (43%), Gaps = 22/382 (5%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + QI + W + +I + + + + Sbjct: 314 IHAHAISQILSATLDQRPLISTWPDWIEYLCILGGGLVGIIVAAYIHSPRYTILAIALSA 373 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSF--------FTYITYHLFKSNVKILS-- 216 ++ + +LA L +LS F + ++IL Sbjct: 374 LLVSGISYLALLWGWWLPVVPTLASFLLISLSLDAFYQYDRFIQTKVKAQQQTLRILEQA 433 Query: 217 ---CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + +EL+ + + ++ AE + AK +FLA MSHELRTPLNAILGFS++ Sbjct: 434 KTDLEIQVAQRTSELQQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQM 493 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + +T N I++SG+HLL LIN+IL L+++E+G+ EL E L ++ Sbjct: 494 MAQDTTLSEANHKRNRL---INQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLE 550 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + +LR ++K + K P L ++ D + +RQV++NLLSNA+KFT G + + Sbjct: 551 TVEGIFRLRIEQKGLAFRVKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPA-GHIFLR 609 Query: 393 VGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +G +G I+D G GIA E+ + F Q KS G GLGLPI+Q Sbjct: 610 IGSIPTPAGLTLRFEIEDTGEGIAASELHKLFVPFEQTESGEKSKA-GTGLGLPISQQFA 668 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG + S++ +G Sbjct: 669 QLMGGDIKVSSQVGQGTTFTFT 690 >gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134] gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134] Length = 1290 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 128/262 (48%), Gaps = 10/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AEE LAK +FL++MSHE+RTP+NA++G + V+ Sbjct: 889 ITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENKPRV--- 945 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + S Q LL+LIN+ILD ++I+AG+ E E L +++ AQ Sbjct: 946 -DQLENLKILKFSAQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTAQ 1004 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EKNI++ D ++ V D + QV+ NL++NA+KFT G V + + + + Sbjct: 1005 EKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFTLK-GEVKLMLQLITQNNRQV 1063 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++KD G GI + + + F Q + G GLGL I + ++ Q + Sbjct: 1064 QLRFTVKDTGVGIPKEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLE 1123 Query: 460 SKLREGVEVIAILPNTRVLNFI 481 S+ +G + L + + + Sbjct: 1124 SEENKGAKFYFDLKLDKYMPTL 1145 >gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 775 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 160/277 (57%), Gaps = 2/277 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + + + + + AEL VA + ++RAE N AKS FLA+M Sbjct: 498 QVRLRESERRLMATIGDLSASRITLERQKAELSVANANYQAEKERAEAANRAKSEFLANM 557 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFSE+++ + GPL +E Y EY DIH SG+HLLN+IN+ILD+S+IEA Sbjct: 558 SHELRTPLNAILGFSEILQNQMFGPLGSEKYDEYSRDIHESGKHLLNVINDILDMSKIEA 617 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G ++ I L ++ E + + A++KNI + Q+I L +++AD + M+QV+LNLL Sbjct: 618 GHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL-TMFADRRAMKQVLLNLL 676 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNAVKFT GGR+ + ++I D+G GI + + F Q ++ Sbjct: 677 SNAVKFTNEGGRISLRARKVR-GAVTLTIADSGIGIPRYALQKIGHPFEQVQSQYAKSKG 735 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++S+ HGG+ I S + G + +P Sbjct: 736 GSGLGLAISRSLTRLHGGRMKIHSAEKVGTIISVRIP 772 >gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101] gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1] gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27] gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101] gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27] gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1] Length = 734 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 322 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 381 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 382 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 496 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 557 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 597 >gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] Length = 1045 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I E + ++ + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 661 IINERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEE 716 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + +EYI I + LL LI++ILDLS+IEAG + S S + L DI+ E +++ R Sbjct: 717 EQEKQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRT 776 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + I++ + ++ + QV+ NLL+NA KFT+ G + GR Y Sbjct: 777 ETCGIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-GRELYF 834 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG + S+ Sbjct: 835 YVKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGHIGVESEEE 890 Query: 464 EGVEVIAILP 473 +G +P Sbjct: 891 KGSTFWFTIP 900 >gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 810 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 129/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 608 AIVGFSSLLAETDSRN----ERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ + +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 664 VDVNETCAEIIKSMSMKVSK-GVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + +V F + + QG GLGL I Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805 >gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] Length = 897 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K A E N AKS FLA+MSHE+RTP+N ILG +++ + +EY+ + S Q Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL++IN+ILD SRIE+G+ ++ E + + ++ I A EK IE+ I P++ Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374 Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +RQ++ NLL NA+KFT G + I+D G GIA + Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + G GLGL I+ +++ GG+ ++ S+ G E LP Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPLE 491 >gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. japonica str. M301072PT] Length = 343 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 137/261 (52%), Gaps = 10/261 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + +E+ D RK A E + KS FLA+MSHE+RTPLN ILGF+ +++ + P Sbjct: 2 RQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP 61 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +Y+G I +S +LL++INEILD S+IEAG+ L +L D++++ + +L Sbjct: 62 ----RQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAP 117 Query: 342 RAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTS 397 A K +E+ + ++ D +RQ++ NL+SNA+KFT G V + Sbjct: 118 AAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEE 177 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 IS++D G G++ ++ + +F Q ++ G GLGL I++ ++ GG+ Sbjct: 178 HAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIG 237 Query: 458 IRSKLREGVEVIAI--LPNTR 476 + S EG E LP R Sbjct: 238 VDSTPGEGSEFWISLKLPKAR 258 >gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium] Length = 992 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 9/265 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 V+ L + + E + ++ AE N AK+ FLA+MSHE+RTP+N +LG + Sbjct: 410 VQQLQLIFQDVEKFIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMA 469 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + + + Y+ IHRSG+ LL +IN+ILD+S+I AG L L ++ Sbjct: 470 DLVLRTPL----TDQQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEV 525 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPS--LSSVWADEKGMRQVILNLLSNAVKFTAIGGR- 388 V++ I M R + K + + + D + Q++ NLL NA+KFT G Sbjct: 526 VQDVIDMFAERVKTKGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIG 585 Query: 389 --VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 V V + D G GI+ + +F Q ++I G GLGL I Q Sbjct: 586 LFVEVLEERAWDVLLRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQ 645 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ G+ + S +G Sbjct: 646 KLVGMMAGELTVESTQGQGSIFQFT 670 >gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395] gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457] gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2] gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286] gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33] gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9] gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236] gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10] gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757] gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457] gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395] gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2] gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395] gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9] gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33] gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286] gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236] gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10] gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757] Length = 736 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGTVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 598 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 126/268 (47%), Gaps = 8/268 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +S +++ ++ + + V + +++E R + + F+A++SHELRTP++ + Sbjct: 334 RSMAVLMAPLYAEEHVRGAVAVVRDVTEERRH-----DKLRKDFIANVSHELRTPISMLQ 388 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE + ++E KE I+ + L+NE+LDL+R+EAG +L+ + L Sbjct: 389 GYSEAMVDGV--TSSDEERKEVAQIIYDESLRMGRLVNELLDLARMEAGYIDLNLEEVDL 446 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + A+E ++ + D + QV+ NL+ NA++ T GG Sbjct: 447 DSYLERITRKFASFAREYDVTVELAKPGRGQIAVFDPDRIEQVLTNLIHNAIRHTNPGGL 506 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + V V ++ D G GI E ++P V F + A G GLGL IA+ I Sbjct: 507 ITV-VHEQEEERDTFAVVDTGRGIPEEDLPYVFERFYKADKARTRQHGGTGLGLAIAKHI 565 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 + H G+ + S+L EG LP + Sbjct: 566 IDAHQGKITVHSRLGEGTTFHFTLPKQQ 593 >gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2476 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 108/473 (22%), Positives = 191/473 (40%), Gaps = 32/473 (6%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK 99 L S +S + PL P+ L + Y + + + Sbjct: 1550 LDAVSRLIMSELTPLVSAHHGAFFLVDGNEAGTPLLKLTSTYAYRERKHIANRFRFGEGV 1609 Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 +G+ + R +L+ Q+ L E L + + + +++ F Sbjct: 1610 VGQCALERKTILLTQVPPDYITISSGLGEAAPLNIIVLPVLFEGEVRAVIELASFHPFSA 1669 Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVK 213 + +FL + + I++ + L T L +SN++ Sbjct: 1670 IHQIFLDQLTESIGVVLNMIIANMRTEQLLLQSQDLTQELQSQSNELTQQQEALKRSNIE 1729 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETR----KRAEEE---NLAKSRFLASMSHELRTPLNA 266 + ++ +E + + R ++AE+ + KS FLA+MSHELRTPLN+ Sbjct: 1730 LEEKATLLEEQNRRVEEKNNEVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNS 1789 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +L ++++ G L+ + EY I+ SG LL+LINEILDLS++EAG+ ++ I Sbjct: 1790 LLILAKLLSDNKDGNLSTKQV-EYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDI 1848 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ + A++K ++ ++ P + D + ++QV+ NLLSNA KFT Sbjct: 1849 VLTELNQFIERSFLPVAEQKGLDFAVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDE 1908 Query: 386 GGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G V + V + S+ D G GIA + + +F Q + Sbjct: 1909 -GSVQLKVKLAEPGTHFDHEVLRRSRYVLGFSVVDTGIGIARDKQRLIFEAFQQADGSTA 1967 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I++ I GG+ + S+ G LP + PE+ Sbjct: 1968 RKYGGTGLGLSISREIAKLLGGEIQVASEPGRGSTFTLYLPPEYL---SPEEE 2017 >gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 546 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 18/296 (6%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + + F ++ +L S K+ L ++E + ++ ++ + AKS F Sbjct: 253 IGILAASFIEMSNNLKASYEKLEEY---SHTLQQKVEDRTRELKDANQKLQDLDKAKSGF 309 Query: 253 LASMSHELRTPLNAILGFSEVIELETM-------------GPLNNETYKEYIGDIHRSGQ 299 L+++SHELRTPL AI+GF+ +I+ + KE I I G+ Sbjct: 310 LSTVSHELRTPLTAIIGFTNIIKKRLDTFIFPQIETNAIKSQKAIQQIKENINIILSEGE 369 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L NLIN++LDL++IEAG+ E S+ +++ ++K + + I+ ++ Sbjct: 370 RLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAATTALIEQKGLALNVDIEKNIP 429 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D+ QV++NL+SNA+KFT G + T +++ D G GIA + Sbjct: 430 DFYGDKNRFIQVVINLISNAIKFTDK-GAISCYAKQT-DNKIQVTVMDTGVGIAPENLEK 487 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q + + G GLGLPI + I+ HGG S+ +G +P Sbjct: 488 IFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAESEPNKGTAFSFTIPLR 543 >gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1013 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 174/401 (43%), Gaps = 20/401 (4%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + K +V WR V IG L + + + +I Sbjct: 414 WIPNLSKTSKVVRWRKSFYVQNSPIG---GDLPWIIAIEEANASHLLALDRIYTKSFAIL 470 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + + P +V L A ++ ++ D L + Sbjct: 471 MVLAILSPLLAKTISSSLVKPLLELANLTSNLPDKLTEQQSLQIPGSPITEINTLSSNFQ 530 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + +K E++ + ++ A+ N AKS FLA+MSHELRTPLN ILG+++ Sbjct: 531 VMAGALQDK---FQEIQQVNVEIQQAKEFADAANNAKSEFLANMSHELRTPLNGILGYAQ 587 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ +E + I I++ G HLL LIN+ILDLS+IEA + +L + + L + Sbjct: 588 ILQR---SEPLSEKGHKGIDIIYQCGSHLLTLINDILDLSKIEARKLDLYPAPLHLPSFL 644 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + I + ++RA++K I + + L V+ADEK +RQV++NLL NA+KFT G V Sbjct: 645 QNVIEINRIRAEQKGITFDYQANSQLPIGVYADEKRLRQVLINLLGNAIKFTDK-GSVTF 703 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V G+ I D G G+ ++ + F Q K +G GLGL I+ I+A Sbjct: 704 KVEPI-GQKIRFQIADTGTGMTSEQVEKIFLPFEQVGD-TKKQAEGTGLGLAISHKIVAL 761 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 G + + S EG + +PE ++ + Sbjct: 762 MGSEITVDSIPGEGSTFSFEV-------ELPEAEDWASTSR 795 >gi|169334065|ref|ZP_02861258.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM 17244] gi|169258782|gb|EDS72748.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM 17244] Length = 734 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 139/255 (54%), Gaps = 8/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ E E + + A N AK+ FL+SMSH++RTP+NAI+G + + + Sbjct: 448 DIKVEQEAHNQALKDAYEMARNANNAKTDFLSSMSHDIRTPMNAIMGMTVIAKNN---KD 504 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E ++ + I S HLL+LIN++LD+S+IE+G+ L+E + L I+ + + ++ Sbjct: 505 NVEKLEDCLDKIETSSNHLLDLINDVLDMSKIESGKVTLNEEPLDLDSIIDDVLNIILPT 564 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401 A++K+I + + + + V D + Q+ LN+LSN+VKFT G + + + T Sbjct: 565 ARDKHITVKLNKEINHAFVQGDVLRINQIFLNILSNSVKFTPKNGNIQIFIREITPEYKN 624 Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 YIS DNG G++E + T F + +I +G GLG+ I ++I+ G+ Sbjct: 625 YISYEFKFIDNGIGMSEEFKDKIFTPFARSEESIIKNVEGTGLGMSIVKNIVDMMNGEIY 684 Query: 458 IRSKLREGVEVIAIL 472 ++SK+ +G E IL Sbjct: 685 VKSKINKGSEFTVIL 699 >gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 607 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A++ + F+A++SHEL+TPL I ++E + + N E ++ + + + Sbjct: 367 AQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVL--ENTELATSFLQVVDGEAERM 424 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+ ++L LS ++ + ++ ++L +I+ I+ + + A+ K EI + + Sbjct: 425 ARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEIITHLQDEPVHI 484 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 +AD+ + QVILN+LSN++K+T GGR+ V + + I+D G GI + +I + Sbjct: 485 YADKDRIEQVILNILSNSIKYTPEGGRIIVDL-IVDEGVVTLKIRDTGIGIPKEDIARIF 543 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F + A G GLGL IA+ I+ H G I S+ G EV LP T + Sbjct: 544 ERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLPVTEI 599 >gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 1267 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + + + AE+ N AKSRFLA +SHE+RTPLN I+G S+++ + P Sbjct: 588 RDITEQKHIQEELIQATQEAEQANAAKSRFLAMVSHEIRTPLNGIIGLSQLMRRTGLSP- 646 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL- 341 + K+Y+ + S + LL +IN++LD S+IEAG+ E+ A +++ L + Sbjct: 647 ---SQKDYMDKLGNSSESLLRIINDLLDFSKIEAGKVEVERVAFQPQEMLSRLTDQLSVF 703 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396 ++ E ++ L + + D+ + Q++LNL NAVKFT G V + + + Sbjct: 704 MGGKEQFEFILEVPEQLPTTLLGDQMRVEQILLNLCMNAVKFTER-GHVKLALEVMEQCS 762 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G +++D G G+ + +I + T F Q + G GLGL IA ++ GG+ Sbjct: 763 DGLKLQFTVEDTGIGMTKKQIDKLFTPFTQADGSTTRKYGGTGLGLVIANGLVKMMGGKI 822 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484 + S+ G +L + VL+ + E+ Sbjct: 823 QVDSEPGLGSRFSFVL-SFPVLSSVMEE 849 >gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] Length = 571 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 8/280 (2%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + N + E I + A+ ++ A + + AK F+ M Sbjct: 152 QPLWISVINSVIMGNNGRVDKYIETIIDITAKKKAELELIAAKEEALQLSRAKDMFMGVM 211 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPLNA++G S ++ + E+ KE + ++ S ++L+ LIN++LD ++IE Sbjct: 212 SHEIRTPLNAVIGMSHILLND----NPLESQKENLSILNFSAENLMTLINDVLDFTKIET 267 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G EL + + + D+++ I ++ +A EK I + + ID ++ V D + Q++LNL Sbjct: 268 GNVELEIARLDIRDMIQSIIGSMKYKANEKGIYLTKSIDEAVPDIVMGDRARLVQILLNL 327 Query: 376 LSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +SN+VKFT+ GG + + V + I + D G GIAE ++ T+ SF Q Sbjct: 328 VSNSVKFTSEGGVNIDLKVIEQTKDTVRIRFGVSDTGIGIAENKLNTIFESFKQAEADTT 387 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ H + + S L +G + Sbjct: 388 RHYGGTGLGLAISKRLIQLHDSRINVDSVLGQGSTFWFTI 427 >gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1444 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 8/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ A++ ++ AE+ KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 689 ITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTP--- 745 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I +GQHLL +IN+ILD S+IEAG+ + L ++ +L + Sbjct: 746 -RQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTN 804 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401 KN+E+ + + + D + Q+++N +NAVKFT G + V V + Sbjct: 805 AKNLELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQERTQTEVV 864 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y +++D G GI + + SF Q + G GLGL I++ + G + S Sbjct: 865 LYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVGVES 924 Query: 461 KLREGVEVIAI 471 + +G Sbjct: 925 EYGKGSTFWFT 935 >gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 885 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 487 ITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ + Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVF 658 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 714 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 715 KGTTFTFTLP 724 >gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] Length = 1072 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ + +L + S+ +I L N LP A+ Sbjct: 165 RTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227 +AL Q + ++ + + L + L + + Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + ++ + +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y+ IH S LL +IN+ILD S+IEAG+ + + L D+ ++ +A EK Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402 +E+ + + D + Q+I+NL++N+VKFT G + V+V Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D G G+ + ++ ++ T+F Q + G GLGL I + ++ GGQ + S+ Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513 Query: 463 REGVEVIA 470 +G I Sbjct: 514 GKGSHFIF 521 >gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1128 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 8/274 (2%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + + + I + A + R AE+ + AK FLA+MSHE+RT Sbjct: 353 MHGNTHRDEEGQIMGIYAILTDIRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRT 412 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAILG + + + NE + ++ ++ +G LL ++N+ILD S+IEAG E+ Sbjct: 413 PMNAILGMTHLCLQTDL----NERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIE 468 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVK 381 ++++ + +++ ++ +RA EK IE+ D +L + D + QV++NL+ NA+K Sbjct: 469 KTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALK 528 Query: 382 FTAIGGRV-HVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V + V ++ R S+KD G G+ ++ + SF Q + G Sbjct: 529 FTEQGEVVVRIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGT 588 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I+ ++ GG + S +G L Sbjct: 589 GLGLAISHRLVQLMGGVLKVESTPGQGSCFSFTL 622 >gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1009 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 10/273 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 ++ V L A + ++ + R RA+ ++AK FLA MSHE+RTP+ Sbjct: 580 RVWGEAEVNALRVLASSLAGLILIQENQEALQIARDRADAASVAKGEFLAMMSHEIRTPM 639 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+G+++++ + +E E I RSG+ LL LIN ILD S+IE+ EL S Sbjct: 640 NAIIGYTDLLRQTNL----DELQAEQASIIKRSGKALLELINNILDYSKIESRTLELETS 695 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 + + +V E + + +++EK ++I +I ++ ++ W D +RQ+++N +NAVKFT Sbjct: 696 NVDVEQVVCEALEYILPQSKEKALKIDFEISETVNAAYWGDPHRLRQILMNFANNAVKFT 755 Query: 384 AIGG-RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G R+ V + + Y + D G GI E + + F Q + G Sbjct: 756 DTGSIRIDVDLKHSESSPDTHALYFRVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGT 815 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ ++ G+ + S++ EG + Sbjct: 816 GLGLVISKRLIERMDGRVWVSSQVGEGTTFHFV 848 >gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1160 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 3/292 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + E D L ++ +E + + + KS Sbjct: 430 AHLETQQAELEQTNEKLSEQAQTLADQRDELDQRNTTLGRIQAQLEERAEELQRASRYKS 489 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ G L++E K + I+ +G LLNLIN+ILD Sbjct: 490 EFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQVK-FAESIYSAGNDLLNLINDILD 548 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 ++++EAG+ E+ L ++ + A E+ + + L V + D + Sbjct: 549 IAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSFQIEEQRELPQVLFTDRQRAE 608 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA KFT GG V ++V +++D G GIA + + +F Q Sbjct: 609 QILRNLLSNAFKFTDRGG-VTLSVSRQDDHYLAFAVRDTGIGIAADQQEAIFEAFRQADG 667 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I++ + GG + S EG +LP V + + Sbjct: 668 TTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTLLLPERMVEDAV 719 >gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 785 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 11/256 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + + G + Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRLGFGRMDKD-IRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I + I+ GG+ + S+L + Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLNF 480 G +P Sbjct: 630 GSTFYFTIPYEETGEH 645 >gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1092 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 7/261 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + Q D +L+ S + A + KS+FLA+MSHE+RTP+N +LG +E Sbjct: 559 ERYEAQERLDAFALQLQQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTE 618 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + E + + +SG+HLL +IN+ILD S+IE+G+ EL + + Sbjct: 619 LLVQSGL----TEEQRSLALSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATI 674 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 I ++ A KN+E+ I + V D +RQV+LNLL NA+KFTA G + + Sbjct: 675 EAVIELMAPTAHIKNLELTYWIAAEMPARVRGDAARLRQVLLNLLGNALKFTAE-GEIAI 733 Query: 392 TVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + +S+ D G GI E IP + +F Q + G GLGL IA+SI+ Sbjct: 734 QATFDAAADRLRVSVADTGIGIPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVE 793 Query: 451 NHGGQFLIRSKLREGVEVIAI 471 G+ I S+ G Sbjct: 794 LMDGEIGIESRYGHGSTFWFT 814 >gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 1782 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 100/391 (25%), Positives = 165/391 (42%), Gaps = 31/391 (7%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 ++ L + + + + + ++ ++ M + + L + Sbjct: 1113 AVIELASFEEFNETHHSFLNQLMETVGIVLNTIAATMRTEGLLAQSQLLTQELQAR---- 1168 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 L L + + + + + + E+E+A+ +E ++ Sbjct: 1169 --------QTELTRKQEELHATNEELQEKAQLLENEKKQVEAKNFEIEMARRAVEEKAEQ 1220 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FLA+MSHELRTPLN++L S+++ G L NE E+ IH +G L Sbjct: 1221 LALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNQQGNL-NEKQTEFARTIHGAGTDL 1279 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 LNLIN+ILDLS+IE+G + +S+ + + + A EK + D SL + Sbjct: 1280 LNLINDILDLSKIESGTVSIDIGDMSIPGMKQHVERTFRQVASEKGLAFEIDFDDSLPAS 1339 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407 + DEK ++Q++LNLLSNA KFTA GRV + V IS+ D Sbjct: 1340 IQTDEKRLQQIVLNLLSNAFKFTAR-GRVTLNVRPARHGWSPTHPVLGDLDRALEISVSD 1398 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI E + + +F Q G GLGL I++ I GG+ +RS EG Sbjct: 1399 TGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELQVRSVPGEGST 1458 Query: 468 VIAILPNTRVLNF---IPEDNHESTQYKCYA 495 +P V+ + E+ +A Sbjct: 1459 FTLYVPMKAVITSPALLAAPTTENDPVVTFA 1489 >gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 2095 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 161/386 (41%), Gaps = 25/386 (6%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L L + + + +++L++F FL + + +I + Sbjct: 1293 ALFRVAPKNLVVLPVLFEGQVKAVIELASLTSFTTSQMTFLEQLTDSIGIVLNSIEATMQ 1352 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + L A L ++N ++ + + E+E ++ R+ EE Sbjct: 1353 TEGLLKQSQQLA-GELQTQQRELQQTNDQLEQKAQQLAERNVEVERKNQEIEQARRALEE 1411 Query: 245 -------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN+IL + + G L+ E+ IH + Sbjct: 1412 KATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTDNPDGNLS-AKQVEFARTIHGA 1470 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LLNLI++ILDLS+IE+G + I +++ + A+ +N+ +DP+ Sbjct: 1471 GTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRNLSFKIDVDPN 1530 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYI 403 L+ + D K ++QV+ NLLSNA KFTA G V + VG G Sbjct: 1531 LARSIVTDSKRLQQVLKNLLSNAFKFTAE-GEVRLKVGGALGGWGTDHPVLNSAPAVISF 1589 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + +F Q G GLGL I++ + + GG+ +RS Sbjct: 1590 EVSDTGIGIPLEKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELASLLGGEIHLRSAPG 1649 Query: 464 EGVEVIAILPNTRVLNFI-PEDNHES 488 +G LP + P + Sbjct: 1650 KGSSFTLYLPLKYSGPTLAPRATPQQ 1675 >gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 713 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 141/277 (50%), Gaps = 11/277 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+ ++ E L R +AE N K FLA +SHELRTPLNAILG+S++++ + Sbjct: 311 EQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPLNAILGWSKLLQSRRL 370 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + E + + I ++ + LI ++LD+SRI G+ L + I+L + + + Sbjct: 371 ---DQEKTSQALATIEKNANLQVQLIEDLLDISRILQGKLTLDITKINLKSTILSALETM 427 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +L A+ K IE+ +P++ V D ++QV+ NLLSNA+KFT GG++ V + + Sbjct: 428 RLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNALKFTPKGGKIEVRLEQ-ADG 486 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GI+ +P V F Q G+GLGL I ++I+ HGG + Sbjct: 487 YAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGLGLAIVRNIVEIHGGIVKAK 546 Query: 460 SK-LREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 S+ +G LP +P+++ T + A Sbjct: 547 SEGEDKGAIFTVSLPL------LPDESRSLTDKQNSA 577 >gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 867 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RA + + KS FLA+MSHE+RTPLNAI+GFS++++ + ++ Sbjct: 622 IQRYKDTEDELIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEAFSS 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++++ I+ + LL LIN+ILDLSRIE+G + S+ +L I+++ Q + Sbjct: 680 EEVQQFVETININCTLLLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDS-QRLSM 738 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +E+ + D ++QV+ NL++NA KFTA G + + + Sbjct: 739 PQGVELRTDFPEGTGKDIVTDSVRLKQVVNNLINNARKFTAK-GSITLGYSMEEPGYTTV 797 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI++ + + F + S QG GLGL I Q+I+ G + SKL Sbjct: 798 FVEDTGAGISDEDQKHIFERFYKAD----SFTQGAGLGLSICQTIVERLHGTITVTSKLG 853 Query: 464 EGVEVIAIL 472 G L Sbjct: 854 RGTRFEVRL 862 >gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 1062 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 9/278 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + VK++ ++ + E + + A++ N AKS FLA MSH++ Sbjct: 630 IILAESRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMSHDI 689 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+G + + P E +E + I S HLL+LINEILD+S+IE G+ E Sbjct: 690 RTPMNAIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKGKIE 746 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 L+E L +++ + + + A +K E+ + + + D +RQV++NL++NA Sbjct: 747 LTEEPFCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLITNA 806 Query: 380 VKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 VK+T GGR+ V V +GR +++DNG G+ + + F + + Sbjct: 807 VKYTQNGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRR 866 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 QG GLG+ IAQ I++ G S+ +G I L Sbjct: 867 VQGTGLGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 904 >gi|149914194|ref|ZP_01902725.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b] gi|149811713|gb|EDM71546.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b] Length = 482 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 182/444 (40%), Gaps = 33/444 (7%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN-SDIKIGEVYVWRIWLLVGQI 115 L + ++ + + L +L L ++V + +W++V Sbjct: 43 LAAMILSAFYFDPALALVCYSGLLFSEVLDLVLTRRVQRWEGNDPIAARRFLVWVMVNTG 102 Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF------LSFFP 169 + +L L+ + AL + ++ +LP + +F Sbjct: 103 MSAVMISLFVLLIAIQQNSGGHFMPLFFLFAAALFAAMNNHQILPSLILRLMIYGATFLT 162 Query: 170 VVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + V + + S H L+ + + +++ L++ +K L Sbjct: 163 ISVMDIVRLRPPLDSHHWLEFFTVAFVLYFIVDCSFVFLKLYRKGLKQLQ---------- 212 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 K + RA+ KS+FL++MSHELRTPL +I +++ + + ++ Sbjct: 213 -----KIKLEH--DRAKRAYEIKSQFLSTMSHELRTPLTSIKFSLDLMNSGCVAQVPDD- 264 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K + ++ L LINE LDL +IE+G ++ + +V E + + +A + Sbjct: 265 LKPILEIAVKNSNRLAELINETLDLQKIESGEMIFRFQSLDISRVVSESVDAIMAQANAE 324 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 IE+ ++ + DE ++QV+ NLLSNA+KF+ GG + V V + +S++ Sbjct: 325 QIEVRKEFPEDEVFINGDEARIQQVLGNLLSNALKFSEAGGVITVRVEQ-NNDRVRVSVQ 383 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E V F Q + + G GLG+ I++ I+ H G +S+L EG Sbjct: 384 DTGTGIPENCEAQVFGRFSQVDSSDRRKVGGTGLGMNISKRIIERHNGTIHYKSRLGEGT 443 Query: 467 EVIAILPNTRVLNFIPEDNHESTQ 490 R PE NH++ Q Sbjct: 444 TFFLEFDLKR----QPERNHDAAQ 463 >gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I L + +S + A LS +A+ + + + A + A Sbjct: 347 LIVVVLILWRVVYVSVVKRLAEYSAALLSVAQGNLAVELEVKGKDELAHMGQAIITARNT 406 Query: 198 SFFTYI-----TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEE 245 + + + + + ++L A +E R AE+ Sbjct: 407 AQALKVVAEGEAKAKRELEEHKEHLEELIEQRTSQLRQANLRLNEEVVNHAQARNEAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AKS FLA+MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++ Sbjct: 467 SRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSGKTLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L +V + ++ RAQEK + I+ +S W D Sbjct: 523 NDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVSRYWKGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ + D G GI++ + T+ + Sbjct: 583 VTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQKTLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + G GLGL I++ I+ GG + S+ EG +P Sbjct: 643 FTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEESEP 697 >gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 854 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 15/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------------ENLAK 249 + + L+K +V+ QAE+D ++ + ++L ++ AE K Sbjct: 420 LAFALYKIDVEDERGQAERDLQHSQQLLTEALDALEQRVAERTRELSIANLNLAHAARVK 479 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 FLA+MSHELRTPLNAILG +E+ GPL++ K + I SG+HLL LIN++L Sbjct: 480 DEFLANMSHELRTPLNAILGRTEMCLDGFYGPLSDGATK-ALHTIEESGRHLLELINDVL 538 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+++IE+G +L I++ ++ + ++ +A +K+I I Q+IDP + + AD + ++ Sbjct: 539 DVAKIESGHADLELQLIAVDEVCAASLRLISQQALKKHIHINQEIDPQVDLIHADARRIK 598 Query: 370 QVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+++NLL+NAVKFT GG + +TV G + + D G GIA +I + F Q Sbjct: 599 QILINLLNNAVKFTPQGGNIGLTVTGDREQDLVHFIVWDTGIGIAPDQIGRLFQPFTQID 658 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ A +G GLGL + S++ HGG + S L G +LP RV Sbjct: 659 SSLSRAHEGTGLGLHLVASLVRLHGGSVQVESTLGTGSRFSFMLPWKRVNAES 711 >gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1295 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A LA + L SN ++ + EL+ A+ +E + E K Sbjct: 512 ARALAASEERLQVQQEELRVSNEELEERSRSLAEKNRELQKARQELEEKARALEISGRYK 571 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN+IL S+++ G L EY I+ SG LLNLINE+L Sbjct: 572 SEFLANMSHELRTPLNSILILSQMLATNKQGNLL-PRQLEYATTINNSGSDLLNLINEVL 630 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IEAGR +++ ++L ++ + + A+EK + + ++ L +++DE + Sbjct: 631 DLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEKQLTLVGELADDLPVTIYSDETRL 690 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------------YISIKDNGPGIAEGE 416 Q++ NLLSNA+KFTA G V +T+G ++D G GIA + Sbjct: 691 GQILKNLLSNALKFTAE-GEVKITIGRPENDKLPPGLKLNPARTLVFQVRDTGIGIAADK 749 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + V +F Q G GLGL I++ + GG+ S+ EG LP Sbjct: 750 LEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELTAASRAGEGSVFTLWLP 806 >gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB] gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB] Length = 853 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 9/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + A+ E ++ AE+ AKS FLA+MSHE+RTP+NAILG + ++ N Sbjct: 450 ISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTDAALN 509 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + I SG+HLL++I++ILDLS+IEAG+ L E+ + L ++ E ML+ RAQ Sbjct: 510 EP----LERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQ 565 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 EKN+ + + +V D +RQ ++N +NA+KFT G + + Sbjct: 566 EKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFT-DHGAITLRSRVIEENDESIL 624 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI+ + + T F Q + G GLGL I + + GG S Sbjct: 625 VRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAES 684 Query: 461 KLREGVEVIAI 471 L +G Sbjct: 685 SLGKGSLFWIT 695 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 10/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ ++ AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 851 ITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTP--- 907 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y+ I ++GQHLL +IN+ILD SRIEAG+ + + L ++ ++ +A Sbjct: 908 -RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKAG 966 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K +E+ + P + D + Q+++N +NA+KFT G +HV V G+ Sbjct: 967 VKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTER-GEIHVRVRVVERHGRRV 1025 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G G+A ++ + SF Q + G GLGL I++++ GG+ Sbjct: 1026 LLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGAE 1085 Query: 460 SKLREGVEVIAILPNTRVLNFI 481 S + EG +LP + + Sbjct: 1086 SAVGEGSTFWVMLPLECAESAL 1107 >gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1068 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 16/362 (4%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 +++ + LL+ ++ + + A L ++ + + Sbjct: 451 MSMILALMLLVCMASRIATKALSLTAFRLRQVTEQLSWQISRGTMPVWPAPTFLREIDAL 510 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + L ++ + + L +E + ++ AE N AKSRFLA M Sbjct: 511 SNNVKEMAESLGQTF---FELKTVNEQLEKRIEERTKELADAKQAAEAANEAKSRFLAVM 567 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N I+G + +++ + P +E +G S LL +IN+ILD S+IEA Sbjct: 568 SHEIRTPMNGIMGINNLLKQSQLTP----DQRELLGYASDSADALLLIINDILDFSKIEA 623 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 + EL S L ++ M QL A +K + + D L V D+ +RQV+ NL Sbjct: 624 NKLELCPSVFRLGRLMESLCNMYQLVADKKGLRLVCDYDRELPELVTGDQDRLRQVLTNL 683 Query: 376 LSNAVKFTAIGGRVHVTVGW----TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSI 429 L+NA+KFT G V + V ++ I + D+G GIA + + F Q Sbjct: 684 LNNAIKFTRQ-GEVRLWVHRLSSSSADGMLRIAFQVTDSGIGIAPEKQERIFDMFSQADS 742 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + G GLGL I +S++ GG + S G LP + + E E Sbjct: 743 STTREFGGTGLGLAICKSLVGLMGGTIQVTSTPGVGSTFRVELPFSPAA-GLAEAEGEGG 801 Query: 490 QY 491 Q Sbjct: 802 QI 803 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 141/282 (50%), Gaps = 14/282 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L+ A ++ AE+ K FLA+MSHE+RTP+N ++G +++ + Sbjct: 690 RDITFLKKASQELYHAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNETPLM-- 747 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E ++Y+ I +S + LLN++N+ILDLS+IEAG+ +L + IS+ V + + + Sbjct: 748 --EEQRKYVQTIKKSSETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQ 805 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG-- 398 A KNI++ ID ++ V ADE + Q++ NL SNA+KFT G R+ +++ Sbjct: 806 ATLKNIDLLYSIDSNVPKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLV 865 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++I D G GIA+ ++ + F Q + + G GLGL I++ + G+ + Sbjct: 866 NKIRVNISDTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGV 925 Query: 459 RSKLREGVEVIAILPN---TRVLNF---IPEDNHESTQYKCY 494 +++ +G R++ P +K Y Sbjct: 926 QTEANKGSVFWFTFEANESKRLVEAKVETPNAFSSEKTFKDY 967 >gi|315126766|ref|YP_004068769.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] gi|315015280|gb|ADT68618.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] Length = 894 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 98/438 (22%), Positives = 186/438 (42%), Gaps = 16/438 (3%) Query: 43 ESLFRVSPILPLFVLLVANIGTWFTQNPIFPM------WSLITLA--VYAANLSLGKKVM 94 ++ + +VL + + IF W TL + K+ Sbjct: 212 KTHLHYALFTACWVLAWSQFFHI--PDQIFGFYNAHFHWLGFTLIPITNILFFNSLLKLK 269 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + ++ ++ + + W + T L + + LS Sbjct: 270 ETSPQLSRFSIYLGIIATAGTPFAIIWPGFGFIWATLVTGATLCLGMIVGIRSWLSGFKP 329 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 + + + + ++ +V L+ ++ +D+ L G++ TAL K ++ Sbjct: 330 ARYFVLAYLAMAIPNMVGNLTNLGLIEPIKIDLYLLGLIGTALDAVLLAFAVANKFSILH 389 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 +L ++++ + + + + AKSRFLA+MSHE+RTP+ +I+G+++ I Sbjct: 390 HENVELTKNLEHKVQLRTQELQQLAEELRDASEAKSRFLANMSHEIRTPMTSIIGYADGI 449 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 +G + I I ++ +H+L LIN+ILD+S+IEA R E+ L + E Sbjct: 450 ---ILGDIQPHERNHGIRVILQNSRHVLGLINDILDMSKIEANRLEIELVETDLFATIAE 506 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +L + ++K ++ L + +D +RQ++LNL +NA+KFT+ G + +TV Sbjct: 507 IESLLGKQIRDKGLKFKVDYQFPLPDWIVSDPTRLRQILLNLATNALKFTSQ-GYIKLTV 565 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + I +KD G G+ + E + T F Q +I G GLGL I++S+ Sbjct: 566 SCNKKQ-LIIKVKDTGIGMTDSEQKDLFTPFHQADSSISRKYGGTGLGLNISKSLATKLD 624 Query: 454 GQFLIRSKLREGVEVIAI 471 G + S L G E Sbjct: 625 GDITVYSVLGSGSEFCFT 642 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 +A+ +M + LA+ ++Y+ + +++ E D I EL+ ++ Sbjct: 632 AEALSAMSLFHAEARFRLASGKVRWSYLASAPRRIGDRVVWDGVEID--ITELKKTEAAL 689 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E ++ AE N K+ FLA+MSHE+RTPLN ILG +++ ++ ++Y+ Sbjct: 690 LEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQTSL----EPEQEKYVELSI 745 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S L L+ +ILD+SRIEAG+ L + S ++V + + + A+EK + + I Sbjct: 746 TSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPAREKGLRLRCAIH 805 Query: 356 PSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-----ISIKDNG 409 P L + DE +RQ++ NL+ NA+K+T G + + + I + D G Sbjct: 806 PGLPPLLVGDEARVRQILFNLVGNALKYTEQ-GDITLELFARDADLCRSECMCIRVVDTG 864 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + V F Q + + +G GLGL I Q ++ G+ ++S+ G V+ Sbjct: 865 VGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEISVQSEPGAGTAVL 924 Query: 470 AILPNTRVLNF-IPEDNHES 488 LP + IP+D ES Sbjct: 925 VSLPLRAASEYCIPQDVAES 944 >gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1051 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 20/300 (6%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + L ++ +L A+ + + A N AKS FLA+MSHELRTPLN Sbjct: 524 KVVSQIANQLGVAVKQAELFAQTQQQAAELKRVADAANVANRAKSEFLANMSHELRTPLN 583 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILGF+++++ + ++EYI +++SGQHLL LIN++L++S+IEAGR + + Sbjct: 584 AILGFTQLLQRDR---TLAAKHQEYIKIVNQSGQHLLELINDVLEMSKIEAGRITCNPTE 640 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 + + +MLQL+A+ K + + +++ S+ V DE +RQV++NL+SNA+KFT Sbjct: 641 FDIKRCLPAIQVMLQLKAESKGLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFT- 699 Query: 385 IGGRVHVTVG--------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 G V + V W S I D G GIA EI + +F Q Sbjct: 700 QDGEVSLRVSVGGVDEDLGLSDEDWVSNTYLLFEIIDTGCGIASEEINDLFQAFKQTKAG 759 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 +S QG GLGL I+Q + GG+ + SK EG +P + E + Q Sbjct: 760 RESQ-QGTGLGLVISQRFVNLMGGEIKVSSKPGEGSCFSFQIPVGVADQMVDESESKLNQ 818 >gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7] gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7] Length = 1118 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ E ++ AE+ AKS FLA+MSHE+RTP+N +LG +I+ + ++ Sbjct: 588 EAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKL----DQQQAH 643 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +I S + LLN+IN+ILD S++EAG+ + +L ++ E + L+ ++ N + Sbjct: 644 HIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPKLLGEVVESFALKVEQNNTK 703 Query: 350 IFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--SIK 406 + ++S + +D +RQ++ NL+ NAVKFT G + + S G ++ S+ Sbjct: 704 LILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAFLECSVI 763 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + ++ SF Q + G GLGL I + + G + S EG Sbjct: 764 DTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNSVEGEGS 823 Query: 467 EVIAIL---PNTRVLNFIP 482 + P +P Sbjct: 824 TFSFSVKIQPRLSKEQDLP 842 >gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] Length = 697 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 99/267 (37%), Positives = 144/267 (53%), Gaps = 7/267 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 DL E + E AE N AKS FL+SMSHELRTPLN+ILGFS+++ + PL Sbjct: 291 DLTDLHESQRRELAE----AERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPL 346 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + + I RSGQHLL LIN+ILDLSRIEAGR +S + EC M++ Sbjct: 347 -PERQQRQVEHIERSGQHLLALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGE 405 Query: 343 AQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+E+ I++ +P+L +V AD ++QV+LNL+SNA+K+ G V V V Sbjct: 406 ARERGIQLDFPPPEPALPAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRM 465 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GI E + F + A QG G+GL I++ ++ + GG+ +S+ Sbjct: 466 EFRVRDTGLGIPEDRRAELFRPFSRLGH-ETGAIQGSGIGLVISRELVRHMGGELEYQSR 524 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG + LP + + +H + Sbjct: 525 EGEGTDFFFTLPMSCTAERLTTQDHAT 551 >gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] Length = 1034 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 123/251 (49%), Gaps = 12/251 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + + R++A+E + KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 648 LITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLL----TATEN 703 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 KE+I I + Q LL L++ ILDLS+IEA E + + L + ++ ++ R Sbjct: 704 ETERKEFISIIETNNQLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL 763 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + + + + + V + + QV++NLL NA KFT G + G Y Sbjct: 764 -QTGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEK-GEIMFGYKIR-GEELYF 820 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462 +KD G GI+ + F + + QG GLGL I ++I+ G+ + S+ Sbjct: 821 YVKDTGIGISLENQKKIFERFTKV----NTFIQGTGLGLSICKNIVTKMKGRIGVESEGE 876 Query: 463 REGVEVIAILP 473 +G +P Sbjct: 877 GKGSTFWFTIP 887 >gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01] gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01] Length = 878 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 15/321 (4%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS----NVKILSC 217 AV +VV L S S + L+ K + ++ Sbjct: 288 AVISFGVALVVILLCWLGFSTWFRVNSKLDAIIHTLNALINSEEKQTKVKVDGSDELTIF 347 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + ++ E++ ++ A N AKS FLA+MSHE+RTPLN I+G +E++ Sbjct: 348 AQQVNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQS 407 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + +E + DI S Q LL L+N+ILDLS+IE+GR ELS + ++V + +I Sbjct: 408 ELSSH----QQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMI 463 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + Q +A K +++ + ++ V D+ ++QV+ NL+SNAVKFT G V V V + Sbjct: 464 LFQSKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFT-ESGHVCVDVSYE 522 Query: 397 S-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 ++D G GI + ++ T+ F Q + G GLGL I +++ Sbjct: 523 ELLEKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSM 582 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG+ + S G + Sbjct: 583 MGGKLVATSTKGVGTCFEFSI 603 >gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] Length = 1072 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ + +L + S+ +I L N LP A+ Sbjct: 165 RTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENILTLLNMSLPDALSHVL- 223 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSF-FTYITYHLFKSNVKILSCQAEKDDLIAE 227 +AL Q + ++ + + L + L + + Sbjct: 224 SAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACHAALFLRD-----VTS 278 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + ++ + +AEE KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 279 RKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTP----KQ 334 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y+ IH S LL +IN+ILD S+IEAG+ + + L D+ ++ +A EK Sbjct: 335 HDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKG 394 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402 +E+ + + D + Q+I+NL++N+VKFT G + V+V Sbjct: 395 LELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-GEITVSVHHIRNVEDLVELE 453 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D G G+ + ++ ++ T+F Q + G GLGL I + ++ GGQ + S+ Sbjct: 454 FRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEA 513 Query: 463 REGVEVIA 470 +G I Sbjct: 514 GKGSHFIF 521 >gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1135 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 12/276 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + L + ++ ++ A++ N AK FLA+MSHE+RT Sbjct: 544 LEATLAGWREGDRRYVTGALRDVTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRT 603 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N +LG + GP N+ ++ + +RSG LL +I++ILDLS++EAG+ E+ Sbjct: 604 PMNGVLGALAL----VEGPNLNDEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVE 659 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 L ++R+ I +L+ A + + + Q+++P++ V AD + +RQV++NL+ NA+K Sbjct: 660 PVDFELRAVLRDSIDLLEPAACGRGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALK 719 Query: 382 FTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 FT GG V V VG + D G GI E PT+ F Q + Sbjct: 720 FTNRGG-VAVRVGLEGDAVADGSFLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRF 778 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ ++ GG + S +G Sbjct: 779 GGTGLGLAISRELVTLMGGTIGVASAEGKGSTFWFT 814 >gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 910 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 7/249 (2%) Query: 231 AKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A D R +A E N K FLA++SHELRTPLNAILG+++++ + + E+ Sbjct: 654 AAIAIDNARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKL---DAESQA 710 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I R+G+ LI +ILD+SRI G+ +L + L ++ E + + L ++ K+I Sbjct: 711 RALETIERNGRAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHI 770 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + +D +SV D ++QV+ NLLSNA+KFT GGR+ V + G +S++D+ Sbjct: 771 ALHCTLDAEAASVSGDPARLQQVVWNLLSNAIKFTPEGGRIDVRLAA-DGASALLSVRDS 829 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467 G GI +P + F Q + A G+GLGL I + ++ HGG S G Sbjct: 830 GVGITPEALPYIFERFRQADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGAL 889 Query: 468 VIAILPNTR 476 LP R Sbjct: 890 FAVRLPRRR 898 >gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia enterocolitica subsp. palearctica Y11] Length = 847 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ ++ + V D Sbjct: 346 DVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 466 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHL 515 >gi|310790716|gb|EFQ26249.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1303 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 15/266 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 689 ELKRKINQMVSNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 748 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 749 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 804 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 805 LKTLAVKANEKYLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 863 Query: 395 WTS---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GIA ++ + +F Q ++ G GLGL I+ Sbjct: 864 KADPVVWACNPDQYAIEFIVTDTGIGIAADKLDLIFDTFQQADGSMTRKFGGTGLGLSIS 923 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI 471 + ++ GG ++S+ +G E Sbjct: 924 KRLVKLMGGDLWVKSQHGQGSEFHFT 949 >gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 976 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 23/338 (6%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A S A + + + F V + + H L ++A + Sbjct: 232 VATSRMATGDAAVKRTLLAGFSTAGVVVLLLFLWGGHALLQNIARRDS---------AEK 282 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++ L + E+ ++L A+ + +++AEE + AKS FLA MSHE+RTP+NA Sbjct: 283 ELRAFAATLESKVEQR--TSDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNA 340 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG + + T Y+ I +G+ LL +IN+ILD+S+IEAG+ L A Sbjct: 341 ILGITYLCLQTTHEN----KQLYYLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAF 396 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAI 385 +L ++V + KNIE+ +DP++ +V D + QV+ NLL NAVKFT Sbjct: 397 ALQELVENLSDLCGALVGGKNIEVLFHVDPNVFVTVEGDLLRLTQVLTNLLGNAVKFTEK 456 Query: 386 GGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GRV + + IS+ D G G+ E E+ + F Q +I G GLG Sbjct: 457 -GRVVLRIEELGRGADTITLGISVSDTGIGLTEEELARLFKPFEQADGSITRRYGGTGLG 515 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRV 477 L I Q + GG+ +RS+ +G LP V Sbjct: 516 LVICQRFVRMMGGELEVRSEPGKGSAFSFSLTLPYRPV 553 >gi|239995384|ref|ZP_04715908.1| two-component hybrid sensor and regulator [Alteromonas macleodii ATCC 27126] Length = 707 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 28/315 (8%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + +LA + A F+ + + +S K L + E A+S +DE R+ Sbjct: 168 LWLATLALLCIEAAFIFSPMERTVKRSFAK----------LTSLKEQAESSADEARR--- 214 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AKS FL+SMSHELRTP+N + G E+ N + Y+ +G+ LL Sbjct: 215 -ASKAKSEFLSSMSHELRTPMNGLFGMIELAID------NPDKSNIYLKKAKTAGRQLLV 267 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW- 362 LIN+ILD+S+IEAG+ ++ ++ + L+ ++ + + + ++ Q K +E DP L V Sbjct: 268 LINDILDISKIEAGKIKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHVIK 327 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPT 419 D + Q++ NLLSNA+KFT G V + V +T G + D G GI ++ Sbjct: 328 GDITRISQILHNLLSNAIKFTEQ-GSVTLKVTYTKRPNGNYLSFDVIDTGIGIESSKLDN 386 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q + G GLGL IA+ + G + S + +G + Sbjct: 387 IFKKFEQADQSTTREYGGTGLGLSIAKQLAKLMLGDINVTSFVGQGSTFSFT--MAAEES 444 Query: 480 FIPEDNHE-STQYKC 493 +P+ N E S +C Sbjct: 445 QLPDINVEPSANLRC 459 >gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 865 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 130/269 (48%), Gaps = 12/269 (4%) Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 I+E ++A+ D RK AE N K FLA +SHELRTPLN ILG+S+++ Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + I R+ LI ++LD+SRI G+ L+ +SL ++ I Sbjct: 523 QFDAATTD---RALETIERNATLQTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAID 579 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++L A+ K I+I DP L V D ++QV+ NLLSNAVKFT+ GG V + + + Sbjct: 580 TVRLAAEAKEIKIQNVFDPELGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVN 639 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + Q I + D G GI +P V F Q G+GLGL I + ++ HGG Sbjct: 640 DQAQ-IQVIDTGKGITPEFLPYVFDYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQ 698 Query: 458 IRSK-LREGVEVIAILPNTRVLNFIPEDN 485 S G LP + + ++ Sbjct: 699 ATSPGEGLGATFTVNLPLSPKHEAMNHED 727 >gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 657 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 21/274 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+V + + + AEE N AKS FLA+MSHE+RTP+N +LG E+ + Sbjct: 249 ITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGVLGMIELALMRR----PT 304 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+Y+ +SGQ LL +IN+ILDLS+IEAG + E + ++ + L A+ Sbjct: 305 SKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNPRAMLESLFATMSLAAE 364 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 +K +E + +LSS+ DE +RQV+ N++ NA+KFT G + V++ G Sbjct: 365 QKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQ-GEIAVSIDVPRGEKWRD 423 Query: 403 -----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 SI+D G GI + + SF Q G GLGL I++ ++ Sbjct: 424 ICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQV-NGRNYEFGGTGLGLAISRQLVEM 482 Query: 452 HGGQFLIRSKLREGVEVIAILPNT--RVLNFIPE 483 GG+ + S+ +G ++P PE Sbjct: 483 MGGKIWVESEPGKGSLFTFVVPLEALEAEPVAPE 516 >gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 1049 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 13/252 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I E + + R RAEE N K+ FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 664 QVITERKRMEQELLSARDRAEESNRLKTAFLANMSHEIRTPLNAIVGFSAILAST----D 719 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +EY+ I + LL LI +ILDLS+IEAG + + L +++RE +++++ Sbjct: 720 EEQEKQEYVSIIENNNALLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMK 779 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 +E +E+ + SV D + QVI+NLL+NA KFT G + G+ R Sbjct: 780 VRE-GVELLFEQKYEQCSVCTDRNRLSQVIINLLTNAAKFTQTGS---IRFGYEMRDREL 835 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + V F + + +QG GLGL I + I+ + GG+ + S+ Sbjct: 836 YFWVSDTGSGIPADKTEQVFERFVKL----NTFKQGTGLGLSICKMIVEHLGGRIGVESE 891 Query: 462 LREGVEVIAILP 473 +G + ILP Sbjct: 892 EGKGSKFWFILP 903 >gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] Length = 897 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K A E N AKS FLA+MSHE+RTP+N ILG +++ + +EY+ + S Q Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTA----EQREYLSLVMSSAQ 314 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL++IN+ILD SRIE+G+ ++ E + + ++ I A EK IE+ I P++ Sbjct: 315 SLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVP 374 Query: 360 SV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +RQ++ NLL NA+KFT G + I+D G GIA + Sbjct: 375 EVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQK 434 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + G GLGL I+ +++ GG+ ++ S+ G E LP Sbjct: 435 AIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPLE 491 >gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1666 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 163/334 (48%), Gaps = 18/334 (5%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAE 227 VV + + + + + V+ ++ E+ A Sbjct: 1113 VVAIFVFYCREFREQDHYLIELVCSLGEQLALTLQRRRIEQEVREVNQHLEERVKARTAA 1172 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 LE+ +++ A+ NLAKS+FLA MSHELRTPLN ILG++++++ E Sbjct: 1173 LELTNQALKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQR---DQTLTEQQ 1229 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++ + I++ G HLL+LIN+ILDL++IEA + +L + + L + E +++ RA K Sbjct: 1230 QQSLEIIYKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIAVIIHPRATGKG 1289 Query: 348 IEIFQKIDPSLSSVWA--DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------ 399 + DP LS+++ D K +RQ++LNLLSNAVKFT G V + V S Sbjct: 1290 LTWTYFTDPQLSNLFCLVDSKRLRQILLNLLSNAVKFTDT-GEVILEVEVISPFTNSNPY 1348 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +KD G GI +I ++ F QG+ A K +G GLGL I Q ++ G + + Sbjct: 1349 VTLRFKVKDTGIGIPSEKIESLFQPFEQGTEAYK-QSEGTGLGLTITQKLLEMMGAKLEV 1407 Query: 459 RSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQ 490 S+ +G LP ++F + ES++ Sbjct: 1408 ESQYNQGSLFRFDLQLPIVEGVDFPNGEASESSE 1441 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 8/285 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + +A+ AEL + ++++ A E AKS FLA+MSHE+RTP+N I+ Sbjct: 582 DTLQRAAELEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGII 641 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + +Y+ I + + LL +IN+ILD S++E+G+ + E +L Sbjct: 642 GLTYLALQREC----PAAIADYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTL 697 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 +++ + M +EK + + + + + D + Q++LNL+ NA+KFT G Sbjct: 698 SEVLDNTLQMFTHAVREKGLSLRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGS 757 Query: 388 -RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + V T + +++D G GI ++P++ F Q +++ G GLGL I Sbjct: 758 VTLFVRCVETDQQTVTLGFAVRDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAI 817 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 A+ ++ + GG +RS + +G L R + + Sbjct: 818 ARVLVQHMGGTIHVRSVVGKGSTFSFTLRFRRPAAVLKGAESTAP 862 >gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010] gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010] Length = 994 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 8/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + +++ R AE N ++ FLA+MSHE+RTP+N ++G ++ + + Sbjct: 456 ISEHKQVEAILKTERDDAESANRSRGEFLANMSHEIRTPINGVMGAMNLLADTPL----S 511 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + RS + LL +IN+ILDLS+IE+G+ E+ E ++L++ + + +L +A+ Sbjct: 512 ASQHNLLNISKRSAESLLGIINDILDLSKIESGKLEIIEEEVALVNTLCDVARLLSAKAE 571 Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 K+IE+ SV D +RQV+ NLL+NA+KFT G V V + Sbjct: 572 SKHIELLCPAHYLDEVSVKVDGLRLRQVLTNLLNNAIKFTEQGSVKLSVDVLSQTSDKLK 631 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++ D G GIA + + F Q ++ E G GLGL I++ ++ GG + S Sbjct: 632 LRFNVVDTGQGIAADQQALLFQRFQQVDSSLTRREGGSGLGLSISKQLVELMGGTIGVES 691 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 +L G L + P Sbjct: 692 ELGIGSRFWFELDLMKATQNQP 713 >gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] Length = 577 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 8/271 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + ++ K+ L +++ ++ AE+ N +KS+FLA MSHELRTPLN Sbjct: 167 RFRPLLERAINDIEHKEALQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLN 226 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG +++ + ++ ++ + + S + LL +IN+ILDLSRIE+G +EL Sbjct: 227 AVLGLIDLLRDD-----SDAYQQDMLEQMENSAELLLVIINDILDLSRIESGHFELQRHW 281 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 ISL ++ + AQ K+I K W D + Q++ N++ NA+KFT Sbjct: 282 ISLSRKLQHALEYHSQVAQAKDITFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTH 341 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V V++ T+ I +KD+G GI I + + F Q +I G GLGL I Sbjct: 342 H-GFVDVSL-VTARDRLEIEVKDSGIGIDNERIEHLFSPFIQADTSITRNYGGTGLGLAI 399 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + ++ GG + SKL EG +P Sbjct: 400 TKHLVELMGGSITVSSKLGEGSLFTISIPLQ 430 >gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 939 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 19/267 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 514 ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 569 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + + + + LL LINEILDLS+IE+G E + + I++ + +E R Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + + D+ + QV NL+ NA KFT G ++ G+ G Sbjct: 630 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 685 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI +I V F + + QG GLGL I ++I+ GG+ + S + Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 741 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP E + E+T+ Sbjct: 742 QGTTFTFTLPYES------EQSTENTK 762 >gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1336 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 19/267 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 911 ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 966 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + + + + LL LINEILDLS+IE+G E + + I++ + +E R Sbjct: 967 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 1026 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + + D+ + QV NL+ NA KFT G ++ G+ G Sbjct: 1027 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 1082 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI +I V F + + QG GLGL I ++I+ GG+ + S + Sbjct: 1083 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 1138 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP E + E+T+ Sbjct: 1139 QGTTFTFTLPYES------EQSTENTK 1159 >gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1098 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + A + AKS FLA+MSHE+RTP+N ++G ++ + N Sbjct: 413 ITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETEL----N 468 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I S LL++IN+ILD S+IEAG+ L + L ++ + +L L+A Sbjct: 469 TEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQAS 528 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGR 399 K IE++ D +L V +D + QV+LN++ NAVKFT G+V V+ Sbjct: 529 NKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSNDDVKGKVWVSATLNDHE 588 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I ++DNG G+ E ++ + +F Q + G GLGL I S++ GG Sbjct: 589 IAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTGLGLSITNSLLELMGGNI 648 Query: 457 LIRSKLREGVEVIAILPNTRVLNFI 481 + S G LP + Sbjct: 649 KVDSHHGSGSRFYIELPFIPAEDEP 673 >gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1306 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 10/239 (4%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA+MSHE+RTP+NA++G + ++ + N ++++ I SG LL +IN Sbjct: 658 RAKSDFLATMSHEIRTPMNAVIGMTGLLLDTPL----NAEQRDFVETIRNSGDALLTIIN 713 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S+IE+G++EL + L D + + ++ RA EK I++ I ++ + D Sbjct: 714 DILDFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDV 773 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLT 422 +RQ+++NLL+NAVKFT G V + + +I+++D G GI + + Sbjct: 774 TRVRQILVNLLANAVKFTPAGEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFK 833 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL--PNTRVLN 479 +F Q + G GLGL I+Q + A GG+ + S + G + P Sbjct: 834 AFSQVDASTTRQYGGTGLGLAISQRLCALMGGRMWVESTVGVGSTFHFTIIAPAAESPQ 892 >gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 810 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 11/273 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + ++ I+ D+ E + R +AEE + KS FLA+MSHE+ Sbjct: 544 INVVVRDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEI 602 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + Sbjct: 603 RTPLNAIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 + + + + E I + ++ K +E+ + ++ D+ QVI N ++NA+ Sbjct: 659 FVYTNVDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNAL 717 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT G + + + ++D G GI E + +V F + + QG GL Sbjct: 718 KFTQQ-GSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGL 772 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GL I +SI++ GG+ + S G P Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGVGSCFWFTHP 805 >gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 791 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 135/253 (53%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + ++ AE N+AK FLA+MSHE+RTPLN I+GF+E++ + Sbjct: 383 LTETKKIEYTLRYAKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELLLNSPL----Q 438 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY+ +I SG+ LL L+N+ILD S+I++G+ E +LID+V+ + + Q+ A Sbjct: 439 EEQKEYLKNIFFSGKSLLELVNQILDFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAA 498 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K I + +IDP+L V D +RQ++ NL+ NA+KFT G V V++ G Y Sbjct: 499 SKGIALHIQIDPNLPKYVSLDPLRIRQILSNLIGNAIKFTHE-GSVKVSLQQMERNGDYV 557 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GI + SF Q +I G GLGL I ++ + I+ Sbjct: 558 TISFEVSDTGIGIDMNVGSRLFDSFSQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQ 617 Query: 460 SKLREGVEVIAIL 472 S+L +G + L Sbjct: 618 SELGKGSQFSFPL 630 >gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] Length = 1000 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/462 (23%), Positives = 185/462 (40%), Gaps = 36/462 (7%) Query: 50 PILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN--LSLGKKVMNSDIKIGEVYV-- 105 L + PI+ + I + A +L ++ + E Sbjct: 422 LTTIGGALQTLALLKVLPSAPIYLAATPIGILSGAVMISFALADRIKRMQKEALEANERA 481 Query: 106 ----WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT-LLIALSISAL------ 154 R G+ + + + LIA A+ Sbjct: 482 VQNMARYRSTFNNAIEGMYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPG 541 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 + L F + + + S+ V + M+ A ++I L + Sbjct: 542 GDGQLQQLAFAGKLQLETCYTGKNGKSIWVDH--FSQMIRGANGLPSHIEGSLTDITERK 599 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 +AE+D I +LE ++ A AK FLA+MSHELRTPL AI+G+SE + Sbjct: 600 ERERAEQDREIDKLE---------KELATASATAKGDFLANMSHELRTPLTAIIGYSESL 650 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 +++ + ++ + I RS HLLN+IN+ILD S++EA E+ ++ ++++ Sbjct: 651 NDQSLSATDE---QQAVDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLKD 707 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +A+ +N+ L + AD ++Q++LNL SNA+KFT G V + V Sbjct: 708 VYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKE-GSVTIDV 766 Query: 394 GWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 GW R S+ D G G++E +I + S+ Q + G GLGL I++ + Sbjct: 767 GWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKM 826 Query: 453 GGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHESTQ 490 GG + S+ +G + PN R E+ +T+ Sbjct: 827 GGTIEVTSEPGKGSCFTVYIGGNVPNRREWIENQEEATRATE 868 >gi|84385756|ref|ZP_00988786.1| putative sensor histidine kinase [Vibrio splendidus 12B01] gi|84379072|gb|EAP95925.1| putative sensor histidine kinase [Vibrio splendidus 12B01] Length = 819 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 22/331 (6%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + + F V ++L S + + A ++ + + ++ Sbjct: 198 LILGTLFSVFISLLVATWSSKRIKRRLHTLLKAANQVAAGHLKQGAATLELGSKNDSQDE 257 Query: 222 DDLI---------------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L+ +E+ E R +AE AKS FL++MSHE+RTP+N Sbjct: 258 VALLTQSFQKMTTNLVKNDSEMREKNQELVEERTKAEAAVKAKSEFLSTMSHEIRTPMNG 317 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG S++I +T KE I I SG HL+ ++N+ILD S++E + EL + Sbjct: 318 VLGISQIIASQT----QEPETKENIDLILDSGHHLMTILNDILDFSKVEENKLELDFAPF 373 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + +++ L+ A EK I + + + P+ + D +RQ++ NL NA KFT Sbjct: 374 NFVQVIQPVRSALKPLADEKGIRLLIENNIPTSIQLIGDCARLRQIMFNLGGNATKFTKE 433 Query: 386 GGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V + +++ D G GI +G+ + SF Q + G GLGL I Sbjct: 434 -GHVSIQADLNRPNNQLILTVTDTGIGIPKGKHEQIFNSFEQADTSTTRKFGGTGLGLAI 492 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +++++ G+ + S + G + LP Sbjct: 493 VKNLVSLMNGEITLTSAVGLGTKFQVSLPIA 523 >gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase BarA [Erwinia amylovora ATCC BAA-2158] Length = 924 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 21/295 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 242 GYMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRA 301 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T ++Y+ I RS +LL Sbjct: 302 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLL 357 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ L L + E +++L A EK +E+ I + Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417 D M+Q+I+NLL NA+KFT G + + V + + I D G GI+E + Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 476 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q +I G GLGL I Q ++ GG+ S+L G + Sbjct: 477 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531 >gi|311893920|dbj|BAJ26328.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1247 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 82/357 (22%), Positives = 130/357 (36%), Gaps = 8/357 (2%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L P + + A+ + + Sbjct: 208 LAAASGVPDGHPAAPALIGPGQEGPWPVAAVRGGAPASVALPARGAFADLPRGAWEVPPR 267 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-RKR 241 + L G S F + + + VA + E R+R Sbjct: 268 QARVVPLNGPDGGGPSGFLVVGLNPHRPPDDGCLDFVGLVADRLAAGVASARGHEAQRRR 327 Query: 242 AE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 AE E + AK+ F +++SHELRTPL I G +E + + +E IHR+ Sbjct: 328 AEQLAELDRAKTVFFSNISHELRTPLTLIAGPAEDLRRRLADA--DPDVREDAETIHRNA 385 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L L++ +LD SRIEAGR + L + E + + Q + + P Sbjct: 386 LRLGRLVDTLLDFSRIEAGRMRARPRPVDLAAVTAELAAVFRPAVQRAGLTLEIDCPPLS 445 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + V D +V+ NLL NA+KFT G V V V +S++D G G+ E+P Sbjct: 446 APVAVDPGLWEKVVFNLLGNALKFTPE-GTVRVRV-RERDGRALVSVEDTGIGVPAAELP 503 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A + +G G+GL +A+ ++ H G S G LP Sbjct: 504 RLFDRFHRVEDARARSHEGSGIGLALAKELVELHDGTITAASTAGSGTTFTVDLPLA 560 >gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 609 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + +I I + ++ Sbjct: 371 EKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAW--QDKAIAPRFIEVIQTETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L++S ++ + + I +L + +NI +KI + Sbjct: 429 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELT-KSENITFVRKIPKEAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG++ V + +S+ D G GI + ++ V Sbjct: 488 IDEDKITQVLDNIISNAIKYSPQGGKITFRVRELAD-EIIVSVSDEGVGIPKADLAKVFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLPLER 600 >gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1155 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 24/389 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R ++V + G ++ L T + + + IA++I+ ++ + Sbjct: 313 RNLIVVPAVYEGEVKAVIELGTFHELTDIQVDFMQQSVSSIAIAINTSASRSRLKVLVEE 372 Query: 167 FFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILS-------C 217 L Q + A L + + L ++N ++ Sbjct: 373 RQQQSEELQVQQEELRQTNEELEEQARALRDSEAKLQVQQEELRQTNEELEEKNRYLEKQ 432 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q + ELE ++ + +E + E KS FLA+MSHELRTPLN++L S ++ Sbjct: 433 QNDIKKKNEELEYSRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYEN 492 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 L E E+ IH SG LL LIN+ILDLS+IEAG+ +L + + D+ Sbjct: 493 KESNLT-EKQVEFARTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVER 551 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 L+ A+EK + ++ S+ S+ D + + Q+I NLLSNA+KFT+ G + + +G Sbjct: 552 NLRHMAEEKGLTFDIELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQ-GSICLKIGRP 610 Query: 396 -----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 ++ D G GIA ++ + F Q G GLGL I Sbjct: 611 YSEAKLMRSDLDIRNTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSI 670 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ ++ GG+ + S+ G LP Sbjct: 671 SRELVRCLGGEIQLESREGYGSTFTIYLP 699 >gi|116181786|ref|XP_001220742.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51] gi|88185818|gb|EAQ93286.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51] Length = 1270 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 14/265 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 650 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 709 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 710 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 765 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 766 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 824 Query: 395 WTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 S + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 825 KASAVQSGSMGEYAIEFIVADTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 884 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 885 RLVNLMGGDVWVKSEYGKGSKFYFT 909 >gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 588 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 93/441 (21%), Positives = 169/441 (38%), Gaps = 33/441 (7%) Query: 35 REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94 + + + ++ L+A + Q + + AA L + Sbjct: 14 AYLAQAYAPVVSGAMLTGGVYYALIAVAHVFIEQGLSLAILPALAGVTSAALLLGCLYLR 73 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + ++ + L+ A GL + + + T+ L + L+ A + Sbjct: 74 RTPPRMVRLE------LITLGAFGLVNANVVIHQFLTFDEGRLVYFTFVALISATAAPT- 126 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 + + ++ A M A I+ + + Sbjct: 127 -----RRTALFAVGGALAGMTVTGWRLGPAFIDLYAFMGLAAGFSALGISSLMRGVVSRA 181 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + + L E A + AKS FLA+MSHE+RTPLN +LG +V+ Sbjct: 182 IEARLASERLSVE--------------AVAASRAKSAFLATMSHEIRTPLNGVLGMVQVM 227 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E +G ++++ I S L+ ++N++LD+S+IE G+ EL L Sbjct: 228 ERGRLGV----RQRQHLAVIRESAGALMKVLNDVLDISKIEVGKLELHAQPFELGAFAEG 283 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + + A+E+ + ++ + DE +RQ++ NLLSNAVKFT G V V+ Sbjct: 284 IGRLYAVLAEERGLSFRLSVEDAGHGRLIGDEARLRQIVSNLLSNAVKFTPE-GEVVVSF 342 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 R +++D G GI + + F Q + +G GLGL I + ++ G Sbjct: 343 AA-DDRSLTCAVRDTGIGIPAAQQAVIFDKFTQVDDGAARSFEGTGLGLAICRDLVELMG 401 Query: 454 GQFLIRSKLREGVEVIAILPN 474 G+ L+ S EG +P Sbjct: 402 GEILVASTPGEGSTFTFRVPL 422 >gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 767 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 158/361 (43%), Gaps = 17/361 (4%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + + S A + + A + + + +++ ++ L+ + A + Sbjct: 128 FGAISMVWSTASGQAAIDASVFQASLYTAITLGMLTLLFLLVTSVLVLRPLSLVHARLEA 187 Query: 199 FF---TYITYHLFKSNVKIL-SCQAEKDDL---IAELEVAKSLSDETRKRAEEENLAKSR 251 L + + A D L + E + ++ + +A+ N AKS Sbjct: 188 TMKGEIAQHRTLGRFAADEFWTFSASVDALEFSLTERDEREAELNAAMIKADAANKAKSE 247 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N ++G ++++ + ++ Y I SG L+ +IN+ILD Sbjct: 248 FLANMSHEIRTPMNGVIGMAQLMLETDL----SDDQNLYANTIQSSGSALVEIINDILDY 303 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+I+AG+ L + L + ++C ++ +A K +E+ L D +RQ Sbjct: 304 SKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKGLEVVLDFSQDLPKGYIGDSGRVRQ 363 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQG 427 +++N+L NA+KFT G V V + +SIKD G GI + ++ ++ F Q Sbjct: 364 ILMNILGNAIKFTEK-GSVEFAVNGIQSGDEIALELSIKDTGIGIPQNKLQSIFVPFEQA 422 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 A G GLGL I ++ GG + S++ +G I + + +P+ E Sbjct: 423 EGAKNRQFDGTGLGLAIVNHMVDLMGGSISVESEIGKGSVFILKI-ALPIAQNVPQQKRE 481 Query: 488 S 488 Sbjct: 482 K 482 >gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1006 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 8/269 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++L + ++ A + +E RAE N KS FLA MSHE+RTP+ Sbjct: 456 EELQHYAAELLKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIRTPM 515 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+ILG ++++ + + Y+ SG+ LLNLI++ILDLS+IE+G+ L + Sbjct: 516 NSILGMADMLTDTRLTS----EQRNYVSIFRDSGKALLNLIDDILDLSKIESGKLTLEHT 571 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFT 383 ++ D+V E ++ + A +KN+ +DP S + D ++Q+++NLLSNA+KFT Sbjct: 572 KFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLSNAIKFT 631 Query: 384 AIGGRV-HVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V ++ S + ++D+G GI+E + + +F Q + G GL Sbjct: 632 DSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRKYGGTGL 691 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GL I ++++ G +R+ G E Sbjct: 692 GLSITRNLVELMNGHIDVRNVSSGGAEFR 720 >gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 986 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 142/252 (56%), Gaps = 9/252 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E AE N AKS FL++MSH++RTP+NAI+GF+ + + + ++ Sbjct: 455 KMNQALSEAVHAAETANRAKSIFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDRKRVRD 511 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL D++ + ++ + K +E Sbjct: 512 YLGKILSSSNHLLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTIISGQIHAKQLE 571 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYI 403 ++ +D + V+ D+ + QV+LNLLSNAVKFT GG V V + G I Sbjct: 572 LYMDAMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCPGTVKGSELYEI 631 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KDNG G+++ + + + F + + S QG GLG+ I ++I+ GG ++++ Sbjct: 632 RVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVNMMGGTIEVQTEQG 691 Query: 464 EGVEVIAILPNT 475 +G E I LP Sbjct: 692 KGTEFIVRLPLR 703 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 13/293 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ + + + ++ L + + ++ A+ N AKS FLA MSH Sbjct: 432 FLLGISRDITEQRRAEDELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSH 491 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG+++++ + + I I RSG+HLL +IN+ILD+++IEAG+ Sbjct: 492 ELRTPLNGILGYAQILRR---DKNLEQRQADGIAVIQRSGEHLLAIINDILDMAKIEAGK 548 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +L S + L + ++L+A EK + + P L +V DEK +RQV+LNLLS Sbjct: 549 VDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAAVRVDEKRLRQVLLNLLS 608 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT G V + V WT ++D G GI E T+ F Q S A G Sbjct: 609 NAIKFTET-GSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRETIFRPFEQVSDARHR-VGG 666 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GLGL I++ ++ GG+ + S+ G L +P E+ Sbjct: 667 TGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL-------DVPAVAREAAD 712 >gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12] gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12] Length = 876 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 10/268 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + N I A+ + LE +K+ EE++ KS F+A+MSHE+RTP+N Sbjct: 220 IKELNQHIEVATADLQQSLELLEEKNIELSLDKKKTEEKSRQKSEFIANMSHEIRTPMNG 279 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++GF+ V+ + PL +Y+ I S Q LL +IN+ILD S+I+AG+ L + Sbjct: 280 VIGFTNVLLESKLDPL----QLDYVKTIKTSAQDLLGIINDILDFSKIDAGKLHLDCIPL 335 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 ++ + + E + + A +K I++ D ++ V D ++Q I NL++NA+KFT Sbjct: 336 NIRNCIDEVLTLAAPNAHKKGIDLIPITDINVPKTVLGDSFRIKQFISNLVTNAIKFT-D 394 Query: 386 GGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V V I+I D G GI+ + + T+F Q +I G GLG Sbjct: 395 HGYVLVRTKVEQETDKDYTLCITISDTGLGISPEDQNKLFTAFNQADTSITRRYGGSGLG 454 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVI 469 L I + + G+ + S+L +G Sbjct: 455 LVICKKLCEAMSGRLSMTSELNKGSAFT 482 >gi|29832107|ref|NP_826741.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29609225|dbj|BAC73276.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1383 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 14/309 (4%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 A V I +A A S + + +++ E AEL+ + + +E Sbjct: 867 AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAIQLQDRSDELQSQQAELQRSNAELEE 926 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN++L + ++ G L+++ + + IHRS Sbjct: 927 KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQ-FATTIHRS 985 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL LIN+ILDLS+IEAGR ++ + LI ++ + ++ + + Sbjct: 986 GSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTIDRGLAFDVAVGED 1045 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----------RGQYISI 405 + +++DE+ ++Q++ NLLSNA+KFTA GRV + VG ++ Sbjct: 1046 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELRVGRVKDPEHRYTREDSEEVIAFAV 1104 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GIA ++P + +F Q G GLGL I++ I GG+ + S +G Sbjct: 1105 SDTGIGIAPEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIAESVPGKG 1164 Query: 466 VEVIAILPN 474 +P Sbjct: 1165 STFTLYVPV 1173 >gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora CFBP1430] gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora CFBP1430] Length = 909 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 21/295 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRA 242 L + + + + + E I ++E+ D +KRA Sbjct: 227 GYMLGELDVLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRA 286 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E KS FLA+MSHELRTPLN ++GF+ +T+ N T ++Y+ I RS +LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLL 342 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ L L + E +++L A EK +E+ I + Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAEGEI 417 D M+Q+I+NLL NA+KFT G + + V + + I D G GI+E + Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFT-ESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQ 461 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F Q +I G GLGL I Q ++ GG+ S+L G + Sbjct: 462 SQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516 >gi|294660058|ref|XP_462511.2| DEHA2G22286p [Debaryomyces hansenii CBS767] gi|199434441|emb|CAG91021.2| DEHA2G22286p [Debaryomyces hansenii] Length = 1116 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 23/322 (7%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224 V+ + ++A L + + F IT + + E D L Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459 Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++ E R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V + Sbjct: 516 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 575 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393 L ++A EK++++ + D S + D +RQVILNL NA+KFT GRV V+V Sbjct: 576 TLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKK-GRVSVSVKKS 634 Query: 394 -GWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + + D G GI + ++ + +F Q + G GLGL I++ ++ Sbjct: 635 TRIIEDKERLLLEFCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLI 694 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG+ + S EG Sbjct: 695 HLMGGEIWVTSDYGEGSNFYFT 716 >gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42] gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42] Length = 709 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ K +E + KS FLA+MSHELRTP Sbjct: 264 AEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTP 323 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 324 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 382 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 383 EATNISDMAASMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 442 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 443 TEK-GSVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 501 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 502 TIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 544 >gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 640 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + A+ E R +AEE KS FLA++ HE+RTPLN ILG + ++ + ++ Sbjct: 136 ERKNAEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDTPL----DQR 191 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K + + SG+ LL L+N+ILD SR+EA L ++ L+++V + +++ RA +K Sbjct: 192 QKVFAETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADK 251 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + + + P + V D +RQV+LNL+ NA+KFTA G + + S+ Sbjct: 252 GLTLGCRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSV 311 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI E + F Q ++ G GLGL I + ++ GG S G Sbjct: 312 SDTGIGIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSG 371 Query: 466 VEVIAILPNT 475 + +P + Sbjct: 372 TQFWFRIPFS 381 >gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 808 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 13/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 537 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ Sbjct: 538 Q-GVNLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP T + + E+ Sbjct: 650 KGTTFTFTLPYTVAKSVNADSEKENGD 676 >gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341] gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341] Length = 969 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 22/313 (7%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS---- 235 + +A A + + Q K+ L +E Sbjct: 387 TQGKDELAQMGLAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTHQLSDIN 446 Query: 236 ----------DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + R +AE+ N AKS FLA+MSHE+RTP+N +LG + +++ ++ Sbjct: 447 HKLNQEVLNHAKARYQAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTS---- 502 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ +S L +VRE ++Q RA E Sbjct: 503 TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALE 562 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYI 403 K I + +ID ++S W DE + QV+ NL+ N +KFT G+V + V + T G Sbjct: 563 KGITLSYQIDENVSQYWQGDEIRIGQVLNNLVGNGIKFTEQ-GQVCIRVRFDTQSGGLCF 621 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +++D+G GIAE + ++ +F Q + G GLGL I++ ++ GG+ + S+L Sbjct: 622 AVEDSGIGIAEQDQVSLFDAFTQAEAGR-RKQGGTGLGLAISRKLVEAMGGELQLSSQLG 680 Query: 464 EGVEVIAILPNTR 476 +G LP + Sbjct: 681 QGSCFYFTLPLQQ 693 >gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Magnetospirillum gryphiswaldense MSR-1] Length = 753 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 2/263 (0%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 ++ + L + + E + AKSRFLA MSHELRTPLNA+LGFSE++ + Sbjct: 493 ARSLRTALNDVILRQLRTIRLLNLQLAESDRAKSRFLAHMSHELRTPLNAVLGFSEMLGM 552 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G + + E IG + + +HLLN+IN++LDLS+IEAG +++ + + + + Sbjct: 553 GIYGQV-VQRQSEAIGHVRDAARHLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQ 611 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +L +E + I ++ +L + AD + + Q+++NLLSNA+KFT G VHV Sbjct: 612 QLLSSLTREAEVTIRVEVPSALPRLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCRED 671 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + +++ D G GIA ++ VL F Q ++ A +G GLGLPI +S++ HGG Sbjct: 672 ASG-LCLTVHDTGIGIAADQLARVLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTI 730 Query: 457 LIRSKLREGVEVIAILPNTRVLN 479 + S L +G V P +R++ Sbjct: 731 HLSSTLGQGTCVTLTFPPSRIVP 753 >gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1888 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 95/251 (37%), Positives = 139/251 (55%), Gaps = 14/251 (5%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + E A+ N AKS FLA+MSHELRTPLNAILGF++++ + + ++ Sbjct: 1391 QRQSQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRA---LSTEHQ 1447 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + I+R+G+HLLNLIN+IL++S+IEAGR L+ ++ LI ++ ML+ RA K + Sbjct: 1448 QNLAIINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGL 1507 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------- 400 E+ + L + ADE +RQV+LNLL NA+KFT GRV + V + Sbjct: 1508 ELNFEYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDT-GRVMLRVAMENMGEKILPHPP 1566 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GIA EI + +FGQ KS QG GLGL I++ + GG + Sbjct: 1567 HLFFEVTDTGRGIAPQEINLLFEAFGQTETGRKSQ-QGTGLGLAISRKYVELMGGDISVT 1625 Query: 460 SKLREGVEVIA 470 S + EG Sbjct: 1626 SIIGEGSTFAF 1636 >gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19] Length = 1140 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 8/387 (2%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIA--IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + + WR LV A G+ ++ L + + + A+ +++++ Sbjct: 308 ADSHLTAGAALGQWRPRHLVILPAKSDGMIEAVVELGFLHAYPDATKELLERASEVLSVA 367 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLF 208 + + + L +Q+ + A + L Sbjct: 368 VRSANYRASLQNFLEETQRQSEELQSQSEELRVNNEELEEQSRALKESHVRLEQQQAELE 427 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++N ++ A + +L AK D + E+ + KS FLA+MSHELRTPLN+ L Sbjct: 428 QTNTQLAEQAAMLEAQRDDLSQAKDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSL 487 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++++ + G L E E+ I SG LL LIN+ILDLS+IEAG+ E+ ++SL Sbjct: 488 ILAKLLSDNSEGNLTEEQV-EFAQTIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSL 546 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + + + A +K +++ ++ + V D + + QV+ NLLSNA KFT G Sbjct: 547 KRLASDMERVFTPIANQKRLKMTARLGEGVPETVTTDRQRLEQVLKNLLSNACKFT-EHG 605 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + G ++KD G GI+ V +F Q I G GLGL I++ Sbjct: 606 HVELAI-LKDGDRIVFAVKDTGIGISAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRE 664 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 + GG + S++ G +P Sbjct: 665 LSRLLGGNLSVISQVDRGSTFSLSIPL 691 >gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 654 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L A S E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 466 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY I + LL LIN+ILDLS+IEAG ++ + I + + E +QLR + Sbjct: 467 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLR 526 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ +++ D+ + Q++ N + NA+KFT + G + + Y Sbjct: 527 HNNVTCTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 585 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + S QG GLGL I +I+ GG+ + SK + Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 642 GSTFWFTLPYRQ 653 >gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] Length = 1053 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 8/318 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L + L +A + + T I + + Sbjct: 206 LTLLKMALPPELAAALTLPLRAEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A + + A+ +E + +AEE KS FLA+MSHE+RTP+NAI+G S + Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P ++Y+ IH S LL +IN+ILD S+IEAG+ + SL +++ Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A +K +E+ + + + D + QV++NL++NAVKFT G V V VG Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++ D G G+ E + + +F Q + G GLGL I++ ++ Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 453 GGQFLIRSKLREGVEVIA 470 G+ + SK G Sbjct: 502 EGEISVTSKPDAGSCFTF 519 >gi|239827300|ref|YP_002949924.1| histidine kinase [Geobacillus sp. WCH70] gi|239807593|gb|ACS24658.1| histidine kinase [Geobacillus sp. WCH70] Length = 468 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 7/307 (2%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + L+T + + + +A + L + YH+ + + + D++ Sbjct: 165 VAVIWLPLATLFVFVLLLAGKRMARHITDPLKEMEKVAYHMSQGDYRAQIPVRTNDEV-- 222 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +AK+ + + AEE ++ K FLA++SHELRTPL+ + G+SE I + E Sbjct: 223 -GRLAKAFNVMAKAIAEE-DMRKREFLANVSHELRTPLSYVKGYSEAILQGLV--KTEEE 278 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y+ IHR + L+ ++LDL+R+E L ++ + ++ + + + Q+K Sbjct: 279 ERKYVQLIHREADRMERLVRDLLDLARLEGNNVPLQKTPLVFAQVIEDTVAKYEPFLQKK 338 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I + ++D + + D + QV+ NLL NAV++T G++H+ + S + I+ Sbjct: 339 QITLNMELDHDII-LEGDADRLEQVVQNLLDNAVRYTPAEGKIHIRLKKVSDASCQLIIR 397 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G G+ + ++P + F + A E G GLGL I + I++ H G S+ +G+ Sbjct: 398 DSGKGVPKEKLPLLGQRFYRVDQARTRKEGGTGLGLAIVKQIISLHNGTISFFSEEGKGM 457 Query: 467 EVIAILP 473 EV+ LP Sbjct: 458 EVVIQLP 464 >gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1514 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 162/316 (51%), Gaps = 15/316 (4%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P V + + H++ + L + + L L Sbjct: 781 PCYVEMMQGLQVQAHLVVPLFRSNILWGLLAIHQCSAPRPWQVKEREFAIQISTQLGVAL 840 Query: 229 EVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + A+ + + ++++ A+ + AKS FLA MSHELRTPLNAILG+ E+++ P ET Sbjct: 841 QQAEFLNQAQQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQR---DPQLGET 897 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 E++G I RSG+HLL+LIN++L++SRIEAG+ L++ + L ++ ML+ +A+ + Sbjct: 898 QTEHLGIIGRSGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQ 957 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401 ++++ + ++ V+ADE +RQV++NLL N + +T G+V + V GQ Sbjct: 958 GLQLYFERSATVPQFVFADEGKLRQVLINLLGNGLNYTEK-GQVLLQVDTPEQSGQPGRA 1016 Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D GPGI ++ + +F Q A++G GLGLPI++ + GG + Sbjct: 1017 CQLTFAVMDTGPGIKASDVDQLFEAFTQTDSGY-RAQEGTGLGLPISRRFVQLMGGDIEV 1075 Query: 459 RSKLREGVEVIAILPN 474 S + +G +P Sbjct: 1076 DSTVGQGSTFRFTIPV 1091 >gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 700 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 12/343 (3%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +AL + + P V+ + V + + L + Sbjct: 78 SAGFAALLGMKPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMP 137 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +V + D+ A +E A+ + DE + RAE N+AKSRFLA++SHELRTPLN I Sbjct: 138 VSGSVDGPNWLRAGQDVTARVEAAR-VLDEAKSRAEAANVAKSRFLATVSHELRTPLNGI 196 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++ + P + Y+ SG+ LL L++ ILD SRIEAGR +L+ Sbjct: 197 LGMADLLLDTRLDP----EQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFD 252 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG 386 + +V + +L RAQ+K +EI I L+++ D +RQ+++NL NA+KFT G Sbjct: 253 VAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTG 312 Query: 387 GRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V V++ G G ++++D GPGI E IP + F QG + +G GLGL Sbjct: 313 G-VGVSLARSGEEQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLA 369 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I + ++ G RS + G +LP + + Sbjct: 370 ITRRLVERMNGTIEARSTMGRGSTFRVMLPLPAAEGAMSPETP 412 >gi|330829872|ref|YP_004392824.1| response regulator receiver [Aeromonas veronii B565] gi|328805008|gb|AEB50207.1| Response regulator receiver [Aeromonas veronii B565] Length = 608 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 154/393 (39%), Gaps = 28/393 (7%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 S ++ E+Y + I++ W +P + A+LL Sbjct: 92 DRSLLQQTEIYQQASKAIRSYISLADIWLGPEATKPLDNLAHQELRQQLASLL------- 144 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 L + + + + F + N+ Sbjct: 145 ---PQLHQLTLEVNQQATLFDVARRDSVREQIITTTLIATLQFALLFVLALLIWRQMNIS 201 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L + ++ + AE AKS FLA+MSHE+RTP+N ILG + Sbjct: 202 FLQHK--------LMQQLNDKLLRANQAAEAGTRAKSSFLANMSHEIRTPMNGILGMLSL 253 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + M P ++Y+ S HLL L+N+ILD+S++E G+ EL + L ++ Sbjct: 254 LADRDMDPRE----RDYLETARESANHLLGLLNDILDVSKLEEGKIELQLAPHHLPQLLE 309 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + ++Q K I++ + P + D +RQ++ NL+SNA+KFT G V++ Sbjct: 310 DIRALMQSNCDAKGIKLTLTVAPDTPEWLMIDPLRVRQILFNLVSNAIKFTHQ-GEVNIR 368 Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V ISI+D G G+++ ++ + F Q ++I G GLGL I++++ Sbjct: 369 VDSTLLEQDRHSIRISIQDTGIGMSKSQLKNLFQRFAQADVSITRQYGGSGLGLEISRNL 428 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GG + S G I P I Sbjct: 429 ARLMGGDISVESSEGHGSTFTYIWPARATTPSI 461 >gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1029 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 125/272 (45%), Gaps = 11/272 (4%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + ++L + L +E + A + AKS FL +MSHE+RTP+N + Sbjct: 466 RRMEEELLRY---HEHLEGLVESRTAELQHALDAANIASRAKSEFLTTMSHEIRTPMNGV 522 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +V+ + E +G + S + LL LI++ILD SRIE+G EL S Sbjct: 523 IGLLDVLSHSQLST----EQVEMVGIMRESAETLLRLIDDILDFSRIESGNLELDVGPAS 578 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT--- 383 + D++ + +LQ A K++ + +IDP + V D ++Q++ NL+ NAVKF+ Sbjct: 579 IPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQQILGNLVGNAVKFSSGL 638 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GRV + V + DNG GIA I + F Q + G GLGL Sbjct: 639 DRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGLS 698 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I ++ G+ + S G + LP Sbjct: 699 ICTRLVRMMKGRMEVNSLPGRGSRFVVTLPLA 730 >gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 576 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 16/285 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H + ++++ A++ ++ AEE + KS FLAS +HELRTPL Sbjct: 289 RHWRPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPL 348 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+GF ++ +++ +E++ + H+S HLLNLIN+ILD+++IEAG+ +L Sbjct: 349 NGIIGFLRLVLDGM--ADDSQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEVG 406 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKF 382 ++ L ++ +AQ K + K P+L+ + + + + + QV+LNL+SNA+KF Sbjct: 407 SVELAELFEAIDNFTLPQAQRKRLNYSSKYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKF 466 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG + +T + + D G G+A + + F Q + Sbjct: 467 THDGG-IDITAEIVKKKLYWRDREFPGMIKVRVSDTGIGVALEKQAKLFEKFVQVDGSHS 525 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476 A G GLGL I+Q ++ GGQ S G V +P + Sbjct: 526 KAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 570 >gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] Length = 808 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 537 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ Sbjct: 538 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP V + D+ + Sbjct: 650 KGTTFTFTLP-YTVAESVSVDSEKKND 675 >gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] Length = 1120 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 7/263 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I ++ + + + AEE KS FLA+MSHE+RTPLNA++G S ++ + Sbjct: 734 HDIKDMYAREESLRQAKADAEELADQKSMFLANMSHEIRTPLNALVGLSNLL----VANE 789 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++Y+ I+++ HL +++++ILD S+I+A R +L E A++ + + E + + Sbjct: 790 THVKAQDYMRSINKASIHLKSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQS 849 Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+EK + + ++ D RQ+I NL+SNA+KFT G + VT Sbjct: 850 AREKGLHFEVDNRLDNDIAIVIDPVRYRQIINNLVSNAIKFTEKGEVIVVTKKQQES--L 907 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +S+ D G G+ E ++ + F Q I G GLGL I + + G + S+ Sbjct: 908 LLSVCDTGCGLDENQLSNLFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSISVSSE 967 Query: 462 LREGVEVIAILPNTRVLNFIPED 484 L +G +P N +P + Sbjct: 968 LGKGSCFYVSIPYKSESNALPAN 990 >gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 524 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E + + + A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ Sbjct: 278 ERERQRKEYELAK--AKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEERE 335 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + Sbjct: 336 F--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK- 392 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 N+ +V++D K + QVI N L+NA+KFT+ G + + S +S+ Sbjct: 393 NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSNDEIRVSVS 450 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI++ + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 451 DTGMGISDDDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGS 506 Query: 467 EVIAILPNTRVLNFIPE 483 LP + P+ Sbjct: 507 TFWFTLPLKEIKENEPK 523 >gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] Length = 601 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 194/471 (41%), Gaps = 25/471 (5%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILPLFVL-------LVANIGTWFTQNPIFPMWSLI 78 P + + + + L +L G T + Sbjct: 119 AVPLEAALSASRRVVAAAVGMALGCAIMLVLLEWFGALPASTVTGDLATLFTAIGITLAT 178 Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 A A + + + E +R+ ++ + Sbjct: 179 VYAAGLAFGAESLAHTSKRLLTLEEGRYRLLARHMS----------DVIARHRANGDVNF 228 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL-----AGML 193 I +A L+ + L L V ++ P + + A + + + Sbjct: 229 ISPAAEALLGVPGPLLLRHGLFDRVHVADRPRYLTALSDAARGGEECSVEFRVRRDSAVH 288 Query: 194 ATALSFFTYITYHLFKSNVKILSCQ--AEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + L + K + E + + + R+ AEE +KSR Sbjct: 289 GGEFIWVEMRCRPLEPTQDKASGACEVVSVMRDVTERKAQEEALEIARREAEEAGASKSR 348 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLNAI+GFSE++ E ++ EY G I+ SG HLL+++N ILD+ Sbjct: 349 FLATMSHELRTPLNAIIGFSEMLTHEDEMKIDAARRHEYAGLINESGLHLLSVVNGILDM 408 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++E+G++EL + + + ++ L+A++K +E+ + L + D + +Q+ Sbjct: 409 SKMESGKFELVAEPFAPRETLASSCNLMVLKARDKGVELVLRAPSDLPQMTGDARAFKQI 468 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +LNLLSNA+KFT GG V V+ +GR + + D G GI + ++ + +F Q + Sbjct: 469 LLNLLSNAIKFTEEGGSVTVSAE-VAGRELALRVTDTGIGIGKDDLAHLGKAFFQAGASY 527 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +G GLGL I ++++A HGG+ + S++ G V LP P Sbjct: 528 HGRREGTGLGLSIVKNLVALHGGEMRVDSEIDCGTTVSVRLPIVFTPAAKP 578 >gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] Length = 617 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 154/288 (53%), Gaps = 5/288 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + Y S ++ ++ Q + + L ++E L +E+R E N + FLA++SH Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISH 366 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 EL+TPLN I ++++L + + ++YI I ++ L+ LIN +LD +++++G Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +L+ +++++V E + + A+ KNI I D + D + +++LNLLSN Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GG ++VTV IS+KD G GI E +I + F Q ++ ++G Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G+GL + +S + H G I+S++ +G E I +P V + ++N+ Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] Length = 608 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F++S+SHELRTPL +I G++E + + + E K ++ I + + L L Sbjct: 362 LERMRRDFVSSVSHELRTPLTSITGYTETLLEGAID--DAENAKHFLQIILQESERLTAL 419 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++LDLS+IE+GR E + + + L IV + + + ++K I + +I L V AD Sbjct: 420 INDVLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNAD 479 Query: 365 EKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + + V+ NLL NA+K+ G++ ++ T + +KDNG GI ++ + Sbjct: 480 KGYLELVLRNLLDNAIKYVAEQNGQIMISAS-TVDDMVRVEVKDNGIGIPRKDLGRIFER 538 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A A G GLGL I + I+ H G+ +RS+L G + ++P Sbjct: 539 FYRVDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIPIA 590 >gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 738 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 3/227 (1%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK+ FLA+MSHELRTPLNAI+G S++++ E +G L NE EY+ I+ SG+HLL LIN Sbjct: 360 RAKTEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQNEYVSCIYSSGEHLLALIN 418 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +ILDLS++E G+ EL S + + D+ I ++ RA EK +++ KID ADE+ Sbjct: 419 DILDLSKVEEGKEELLLSPLPVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADER 478 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q++LNLL+NA+KFT + G V + V +G ++ D G GI + + F Q Sbjct: 479 RIKQMLLNLLTNAIKFTPV-GNVSLVVKKVP-QGITFTVSDTGIGIDPNQFQFLFEPFKQ 536 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +G GLGL + + + HGG + S L EG + LP Sbjct: 537 LDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTLGEGSQFTLFLP 583 >gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1046 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 97/447 (21%), Positives = 171/447 (38%), Gaps = 39/447 (8%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL----------AVYAANLSLGKKVM 94 + +L L +A + T +W + L + + Sbjct: 247 RRKEKALLYLACFCIAALFYILTHGEKLLVWGMPDLPYEWILKIQSFSSTLFYYFLIRYV 306 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 + +I + + + + LL + ++ L + + L + Sbjct: 307 HLTTQIVMNRIVLLLYNIVTALMLGMGLLLPTLVLSSFETFILLFGVVSVGYVLLILIRG 366 Query: 155 S-----NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + L +S +VV + V ++ ML L+ + Sbjct: 367 LLQRTDDAALLVISIMSILMIVVTSFVYVLGWGDVRGVTAYEMLIFVLAQTLLLAKRFVH 426 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S +++ + +R + K FLA+ SHELRTPL+ I+ Sbjct: 427 SFMEVENLS---------------------RRLLTLDGLKDEFLANTSHELRTPLHGIIN 465 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++ + G NE K + I G+ L LIN+ILD S ++ GR L+ +++ Sbjct: 466 IAQSMLDR-YGAQFNEPQKHNLALIVNVGRRLSYLINDILDFSNLKNGRLALNRRPVNVQ 524 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 V + +L +K ++ ++ SL V ADE + Q++ NLL NA+KFT G + Sbjct: 525 TAVNSVLEVLGHNVGKKKLQFVKEWPNSLPKVDADEDRLNQILYNLLGNAMKFTEE-GEI 583 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++ R IS+KD GPGIA + + F +G+ A G GLGL I + ++ Sbjct: 584 VISAK-VRNREMEISVKDTGPGIAPDHLSHIFEPFNRGANAEDKGYSGTGLGLGITRRLV 642 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476 HGG + S+L +G LP Sbjct: 643 ELHGGYIRVESRLGKGSTFYFTLPLAE 669 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 95/333 (28%), Gaps = 67/333 (20%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + P + + + L +L TA I L Sbjct: 756 ARFDLVITDWMMPEMSGIELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLR 815 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLA---------KSRFLASMSHELRTPLNAI 267 + ++L A + ++ R AEE + K FL + LN I Sbjct: 816 KPVDAEELKARVRTLLNM----RNSAEEAVRSEMAFLQAQIKPHFLYNA-------LNVI 864 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA-- 325 + ++ + E +++LS+ G ++ Sbjct: 865 VSTV---------AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENT 898 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-- 383 + L + + L + I+ + Q I + NA++ Sbjct: 899 VPLCKELELVESYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQPI---VENAIRHGVM 955 Query: 384 --AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 A GG V V V +S+ D+G GI + + + +G Sbjct: 956 QRATGGTVRVIVQEDGADFV-VSVTDDGVGIPPERLQQL----------LSEEHVSSSVG 1004 Query: 442 L-PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 L I + ++ +G I S +G V +P Sbjct: 1005 LRNIHRRLIHMYGEGLRIESNPMQGTTVSFRVP 1037 >gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 771 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 161/295 (54%), Gaps = 12/295 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDETRK------ 240 G + T I H K L +A DL + A L+D RK Sbjct: 467 GGYVAVGTDITRIKDHEHKLIDNDLRLRATVADLKISQVKLERQAVQLADLARKYAEEKY 526 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 RAE+ N KS+FLA+MSHELRTPLNAI+GFSE++ G L +E Y+EY DI SG + Sbjct: 527 RAEDANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGRLGSEKYQEYCHDILTSGHY 586 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD+S+IEAGR +L + + E + ++ RA+ K +E+ I+ + S Sbjct: 587 LLEVINDILDMSKIEAGRMKLDLEPLDFAGTLSESLRVVSGRAENKQLELHADIEQGI-S 645 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + ++Q+++NLLSNAVKFT GG++ V G + I D G GIA + + Sbjct: 646 VIADRRAVKQILVNLLSNAVKFTPEGGQITVR-GRARADSIVLMIADTGIGIAPQSLRKL 704 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F Q + + G GLGL IA+S+ HGG +RS+L +G V +LP Sbjct: 705 GQPFEQVESQLTKSYHGSGLGLAIAKSLTNLHGGSMRLRSQLGQGTVVRLVLPRQ 759 >gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 8/308 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN-----VKILSCQAEKDDLI 225 ++AL+ + + +++ + + + L ++ +++ + + Sbjct: 374 ILALAITLGLGLLIVNWITKSIKQLSRATCAISQGKLNQNVSIQGFKELVILAESFNKMT 433 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 EL + + + + + + K FLA+ SHELRTPLN I+G ++ I GP++ E Sbjct: 434 KELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPIS-E 492 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+ + I SG L NL+N+ILD S++ +L S++ + ++ + ++ + Sbjct: 493 LQKKNLSMIVGSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEG 552 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYIS 404 K++++ I L V ADE ++Q++ NL+ NA+KFT G V V+ + I+ Sbjct: 553 KDLQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTDS-GVVKVSAELIDVNKKMAIT 611 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + SF QG + + G GLGLPI + ++ HGG ++S + Sbjct: 612 VSDTGIGIPEDKYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGI 671 Query: 465 GVEVIAIL 472 G E L Sbjct: 672 GSEFTFTL 679 >gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis C6786] Length = 925 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 92/456 (20%), Positives = 166/456 (36%), Gaps = 28/456 (6%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 + + I P + + + + + + + LL Sbjct: 256 VLVHAYSWKTIAAALMSMPRIALMTGLVVGIIGMLWIFAIQFDRKGLIPNYRRA--QRLL 313 Query: 112 VGQIAIGLC--WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 ++ + L L + L A + + L A + Sbjct: 314 ESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTGGEPLHIQLWKAYRNATAR 373 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 A++ + + Y + L I+ + Sbjct: 374 PD--SKDSALLQHDLAIERDESNPIYLQANVVAARYRGVNVQLCTLLD-------ISLRK 424 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ +E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + E Sbjct: 425 ESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSM----RQSE 480 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + LL++IN+ILDLS++E+G+ L + ++++ + A+ K +E Sbjct: 481 RLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLE 540 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404 +F + +++ + D + Q++ NL+ NA+KFT G + + V I Sbjct: 541 LFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDS-GHISIDVHRAKTGPGNSAIEIW 599 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI I T+ + Q +I G GLGLP+ Q + GG I S Sbjct: 600 VSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEF 659 Query: 465 GVEVIAILPN-----TRVLNFIPEDNHESTQYKCYA 495 G V +LP + +P H + A Sbjct: 660 GTTVTVVLPLHEARQAAAMPNVPTALHRNASMHARA 695 >gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1955 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 150/264 (56%), Gaps = 10/264 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + + ++ AE + AK F+A+MSHELR+PLNAILGFS +++ + L+ Sbjct: 1472 ISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDE 1531 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+RSG+HLLNLIN++LDL++IEA R + + ++L ++ + M L+AQ Sbjct: 1532 ---RKNAEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQ 1588 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY 402 E+ + + + + DE +RQV +NLLSNA+KFT G ++++V Sbjct: 1589 EQGLNFNVQKTSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNNV 1648 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA E + +F Q S A K ++G GLGL I++ + GG+ + Sbjct: 1649 MLNFEVEDTGVGIAPEEQTDIFEAFNQ-SQAGKQVKEGTGLGLAISREFIKLMGGEISVE 1707 Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483 S++ G + + ++++ IP+ Sbjct: 1708 SQVNIGSKFQFYI-VAKIVDKIPQ 1730 >gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] Length = 617 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 154/288 (53%), Gaps = 5/288 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + Y S ++ ++ Q + + L ++E L +E+R E N + FLA++SH Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISH 366 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 EL+TPLN I ++++L + + ++YI I ++ L+ LIN +LD +++++G Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +L+ +++++V E + + A+ KNI I D + D + +++LNLLSN Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GG ++VTV IS+KD G GI E +I + F Q ++ ++G Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G+GL + +S + H G I+S++ +G E I +P V + ++N+ Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKENLEKENN 593 >gi|241957485|ref|XP_002421462.1| histidine kinase, putative; nuclear response regulator and transcription factor, putative [Candida dubliniensis CD36] gi|223644806|emb|CAX40799.1| histidine kinase, putative [Candida dubliniensis CD36] Length = 1070 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 136/269 (50%), Gaps = 15/269 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G ++ Sbjct: 465 EMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ 524 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 525 L----SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTV 580 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V Sbjct: 581 FGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE-GKVSV 639 Query: 392 TVGWTSGRGQ---------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 +V + + + D G GI + ++ + +F Q + G GLGL Sbjct: 640 SVKKSDKLVLDSNSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGL 699 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG+ + S+ G Sbjct: 700 SISKQLIHLMGGEIWVTSEYGSGSNFYFT 728 >gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1165 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 143/270 (52%), Gaps = 11/270 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ A + +KS FLA+MSHE+RTPL AILGF+E++ + + ++ + Sbjct: 752 ELRLAQEAALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKREQAVKT 811 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +G HLL +IN+ILDLS+IEAG+ E+ +++ L +I+ +L+ A EK +E+ + Sbjct: 812 IQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVTR 871 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNG 409 I+ L + D +RQ+++NL+ NAVKFT GR+ + V + I+D+G Sbjct: 872 IETPLPDLIETDSTRLRQILMNLVGNAVKFTDK-GRIQIKVKFLEENESRFLKFEIEDSG 930 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-RSKLREGVEV 468 PG+++ + + +F Q ++ G GLGL I++ + GG + ++ +G Sbjct: 931 PGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAWTEPGKGTCF 990 Query: 469 IA-----ILPNTRVLNFIPEDNHESTQYKC 493 P TR N ++ HE T K Sbjct: 991 RVVLPVCTFPETRYTNSRFQEKHEQTDKKS 1020 >gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 911 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 20/302 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 LF + + L + + + E+R++AEE AKS FLA+MSHE+RTP Sbjct: 157 AEGLFTTVIAALRAFDQIQSIETRVAERTRELRESREQAEEATKAKSAFLATMSHEIRTP 216 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N +LG ++E + ++ +G + S LL +I++ILD S+IEAG+ +L Sbjct: 217 MNGVLGMLGLLERTELDDH----QRDTVGTMRESANALLRIIDDILDFSKIEAGKMDLER 272 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 A+S+ +V L A K + + +DP++ + D +RQ++ NL NA+KF Sbjct: 273 VALSVPSLVEGVAETLAPAAGAKGLTLLTYVDPAIPQALLGDPVRLRQILFNLAGNAIKF 332 Query: 383 TAIGGRVHVTVGWTS-------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 T GRV + I++ D G GI E + F Q Sbjct: 333 T-ESGRVILRAELEPAADGAGPGTGTGTEPILRIAVCDTGIGITETTRQRLFQPFTQAES 391 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLNFIPEDNHES 488 + G GLGL I++ + A GG+ + S G LP L E+ E+ Sbjct: 392 STTRRFGGTGLGLSISRRLAALMGGEIGVESTPGAGSIFWLRLPMAHGALPPSAEEPQEA 451 Query: 489 TQ 490 + Sbjct: 452 IE 453 >gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1486 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 115/254 (45%), Gaps = 11/254 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D+ E +L + ++ AE AKS FLASMSHE+RTP+N ++G ++ + Sbjct: 673 RDITERTENQNALL-QAKEEAELATKAKSEFLASMSHEIRTPMNGVIGMLGLLSNSKL-- 729 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E + S Q LL+LIN+ILD S+I+AG+ EL + +L ++ + + Sbjct: 730 --TEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNLRGMLGDFAEGIAH 787 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 +AQ K +E+ + S V D +RQ I NL NA+KFT G V V Sbjct: 788 QAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQ-GEVVVRAELKPAHE 846 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+ D G GI +I + SF Q + G GLGL I + I GG Sbjct: 847 GKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAIVKKISRLMGGDV 906 Query: 457 LIRSKLREGVEVIA 470 + S G Sbjct: 907 SVSSVYGIGSCFEI 920 >gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 576 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDD-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------- 395 A + I++ + D + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVPRSQAG 468 Query: 396 ----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASE 569 >gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1242 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 169/401 (42%), Gaps = 18/401 (4%) Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + + R L V + + +V T L Y + Sbjct: 393 ANRAQAVVALTTELAGAARRILTVKSDMLSNDVAMQRIVADVDTTANRLAAYTEQDAVRV 452 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + AV +F ++VA+S + V+ L +A LS T + Sbjct: 453 DLQQRGIVSDVYRAVTSAFL-MIVAVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIR 511 Query: 209 KSNVKILSC-QAEKDDLIAELEVAKSLSDETRKR----------AEEENLAKSRFLASMS 257 + L +D++ A + + DE +R AE N AKS FLA MS Sbjct: 512 SGSDLSLRMSHKGRDEIAALIAGFNVMLDEIERRDVDLQAAIATAEAANSAKSDFLARMS 571 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +E+++ + ++++ ++RSGQ LL +I++ILD S+IEAG Sbjct: 572 HEIRTPMNGVLGMTELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 + L +L ++ + + +L+ A+ K +E+ + S+ + D +RQ++ NLL Sbjct: 628 KLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDPVRLRQILTNLL 687 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT G V ++ ++ +I D+G GI + F Q + Sbjct: 688 GNAIKFT-EHGHVGLSASYSDDGRIVFTIADSGIGIPPDISAQLFRPFQQADSSTARKYG 746 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I++ + GG + S +G P Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTPFEPA 787 >gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1034 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I+E + + ++ AE N AK FLA++SHELRTP+NAILG +E++ + Sbjct: 370 EDISERKRLEGELLVAKEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETEL--- 426 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E ++ + + + +LL ++N++LD ++IEAG+ EL + SL +V + + L R Sbjct: 427 -REDQRQCLATVKSAADNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAAR 485 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A +E+ + P++ ++ D +RQV+ NL+ NA+KFT G V V V Sbjct: 486 AHRAGLELVGDVHPAVPDALVGDPGRLRQVLFNLIGNAIKFTPA-GEVVVGVEPADPSDI 544 Query: 398 -GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G +++D G GI ++ + +F Q + G GLGL I+ ++A GG Sbjct: 545 GGSAVRFTVRDTGIGIKPEKLDRIFHAFEQEDTSTTRRYGGTGLGLTISGRLVALMGGAI 604 Query: 457 LIRSKLREGVEVIAI 471 + S+ G Sbjct: 605 GVESEPGRGSTFAFT 619 >gi|167648680|ref|YP_001686343.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351110|gb|ABZ73845.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 614 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 32/455 (7%) Query: 58 LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS---DIKIGEVYVWRIWLLVGQ 114 + + + P MW + LA+ A L + + + + + + +G Sbjct: 39 IGVCLVAQPVERPFRLMWLAVVLALLAVRLFTDRLLGAALGGRLMADRLLLLARVHSLGL 98 Query: 115 IAIGLCWTLLTLV-EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 I W LL V P + + L ++ LS +++S + + Sbjct: 99 ILSAGLWALLACVRIPQDSVSARYVLIIVLSALAGGAVGVLSPLKWTGRIYVSLILLPAS 158 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK- 232 L+ +D +L + + V L + E +L+A++ Sbjct: 159 LTLILNRG---VDATLGVLGVIFWIVMIVGHRNNHALLVDALRLRDENRELLADVARRNH 215 Query: 233 -----------------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + A+ N AKS+FLA++SHE+RTPLNAILG +++ Sbjct: 216 ATLRLNHDLESSVRARTIELERMTEEAKVANRAKSQFLATVSHEMRTPLNAILGEGQLLA 275 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E + P + + + I + + + +LI+++LD+S+IEAG L +L +V + Sbjct: 276 REALTP----SQRSRLQVIDTASRAMRHLIDDVLDISQIEAGALRLRPKVFALATLVDDI 331 Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + A+ + + + + P D +RQ++ NL++NA+KFT GG V V +G Sbjct: 332 QQIYRPLAEGRGLSLTVSLQPETAPFRRGDPDRLRQIVGNLIANALKFTRQGG-VTVKIG 390 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + +S+ D G GI + T+ F Q + G+GLGL I + + GG Sbjct: 391 GDDEQ-LTVSVSDTGIGIDAKDHETIFQRFVQVDSSSTREAGGIGLGLAICRELSEQMGG 449 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S G P VL P E Sbjct: 450 SLKVISARGIGARFDFSAPIPCVLASAPLAVAEDA 484 >gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 953 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 8/246 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A ++E A E N+AKS FLA+MSHE+RTP++ ILG +E++ + E +E Sbjct: 428 EANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMVTTGL----TEEQRE 483 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I +G+ LL++IN+ILD+S+IEAGR EL + + + +A+ + Sbjct: 484 HMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSVRSFGPQAELNGLV 543 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY--ISI 405 + + + D + QV+ NL+ NA+KFT G + V V + Sbjct: 544 FRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVVARKEGRVCLQFKV 603 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI E ++ V SF Q +++ QG GLGL I++ ++ GG+ + S + +G Sbjct: 604 RDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMMGGEIGVESAVGKG 663 Query: 466 VEVIAI 471 Sbjct: 664 STFFFT 669 >gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 603 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 3/231 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F+A++SHELRTP++ + G+SE I + G ++E KE I+ + L+ Sbjct: 367 DKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAG--SDEEKKELAQIIYDESLRMGRLV 424 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 NE+LDL+RIEAG L+ +++ + V Q A + N+E+ +ID S + + D Sbjct: 425 NELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNVELMGEIDQSDTEAYVDP 484 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV+ NL+ NA+++T++ G V + + + ++D G GI E ++P V F Sbjct: 485 DRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGF-RLDVEDTGAGIPEEDLPFVFERFY 543 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I ++I+ H G+ S++ EG LP ++ Sbjct: 544 KADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFSVFLPFSQ 594 >gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 907 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 10/284 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 IL A + I E A+ E ++ AEE + AK FLA++SHE RTP+NAI+G SEV Sbjct: 345 ILQQNALLNAEIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEV 404 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 I + + + ++ ++++ LL+L+N ILD SR E+G+ L+ S L Sbjct: 405 ILKTEL----SAPQRNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFT 460 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + M A K + + ++ P + V DE +RQ+++NL+SNA+KFT G + +T Sbjct: 461 QVHEMFLSAAAAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDT-GNITIT 519 Query: 393 VG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + S+ D G GI + + + SF Q + G GLGL I + + Sbjct: 520 CKAFPAPSGRADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLL 579 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG +RS R+G LP V E+ + Sbjct: 580 ADMMGGSITVRSAPRQGSTFTVCLPLKAVPEERVFPAAENPAVR 623 >gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223] gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223] Length = 968 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 32/337 (9%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + + +A A + + Q K+ L +E Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440 Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ ++ Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ ++ L +VRE ++ Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q RA EK I + + + ++ W DE + QV+ NL+ N +KFT G V + + Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPE 615 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G +++D+G GIAE + ++ +F Q +QG GLGL I++ ++ GG+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673 Query: 458 IRSKLREGVEVIAILPN---------TRVLNFIPEDN 485 + S+L +G ILP R L+ +P + Sbjct: 674 LSSQLGQGSCFSFILPLQPGQPVDTPARTLDEVPVAD 710 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase [Herminiimonas arsenicoxydans] Length = 560 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 12/284 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +S I++ + DL ++ + AE N AKS FLA MSHE+RTP+N +L Sbjct: 149 RSYDDIVALENLSRDLERQVLERTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGML 208 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ + ++ +EY+ S + LL ++N+ILD S++E+G E L Sbjct: 209 GMMQL----ALAQASDVEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDL 264 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 V I ++ R Q + + + D L + D +RQV+LNL+ NA+KFT G Sbjct: 265 PKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGDVGRLRQVLLNLIGNALKFTEQ-G 323 Query: 388 RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + + G ++ D+G GI E + SF Q +I G GLGL Sbjct: 324 SVTLKIERLPASGTQIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLS 383 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 I + I+ G + S EG L T V P + + Sbjct: 384 ICKKIVEMQRGCIGVESTPGEGSRFWFEL--TFVPAPEPGEKSD 425 >gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] Length = 675 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 92/439 (20%), Positives = 165/439 (37%), Gaps = 22/439 (5%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + L L ++++ + L + E Sbjct: 94 VCYAALFAGLVALQISSLAQPLLPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153 Query: 105 VWRIWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 + +L + L ++ + + L Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213 Query: 160 P---YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 V + P V + + + V+ + L +T + Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDIT----- 268 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E A R+ AE + K FLA++SHELRTPLNA+LG+++++ Sbjct: 269 ---EHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA- 324 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 M P + ++ + I RS + ++LI+++LD+S I +G+ L + L D++ Sbjct: 325 --MRPYDEAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ A+EK I I + P + + D ++QV NLL+NAVKFT GG + V+V + Sbjct: 383 ETIEPMAREKQITIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHAS 441 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++D G GI +P V F Q ++ G+GLGL IA+ ++ H G+ Sbjct: 442 PEGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 457 LIRSK-LREGVEVIAILPN 474 S G + LP Sbjct: 501 TATSNGTNLGTTMTVTLPL 519 >gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1443 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 28/282 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ + A+ + + AE N AKS F+A+MSHELRTPLN ILG++++++ E P Sbjct: 1077 RDISDRKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEE---PN 1133 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + T KE + I +SGQHLL L+N+ILDLS+IEA + EL + + ++ + Sbjct: 1134 LSATQKEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVIS 1193 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395 A++KN+ + L V DE +RQV++NLL NAVKFT GG V VG+ Sbjct: 1194 AKQKNLSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGG-VTFKVGYLGCSEL 1252 Query: 396 ---------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + I D G GI ++ + F Q G GLGL I++ Sbjct: 1253 NVDRSLTEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGN-TDRQVNGTGLGLSISK 1311 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + G + ++S + +G L +P+ + E Sbjct: 1312 RLAELMGSELKVKSTVGQGSIFWLDL-------DLPDVSQEQ 1346 >gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 762 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 143/282 (50%), Gaps = 8/282 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLAS 255 F +I HL + + L + ++ + ++E R A+ +L+KS FL++ Sbjct: 333 FLGHIGEHLAIAIQQALLYKQVQEQKQFFEKRVFECTEELRSSIAVAQSAHLSKSEFLSN 392 Query: 256 MSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 +SHEL TPL ++G + + L+ E ++YI I ++G+ L++LIN+ILD S Sbjct: 393 ISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKYIESIQKNGKKLMDLINDILDYSS 452 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQV 371 I +G Y+L+ SL +V + AQ+K+I++ + +AD + ++Q+ Sbjct: 453 ITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDLILDFQVQKEENDFYADRERIKQI 512 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + +L+SNA+KFT G+V + + + + ++D G GI++ ++P + F Q A Sbjct: 513 LSHLISNAIKFTPDQGKVTLRIWREKSQ-VFFQVEDTGIGISQEQLPLLFEKFQQLEKAR 571 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL + + ++ H G + S +G +P Sbjct: 572 QRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLFTVRIP 613 >gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC 27755] gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC 27755] Length = 995 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 133/261 (50%), Gaps = 12/261 (4%) Query: 221 KDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 D+ E E AE N AK+ FL +MSH++RTP+NAI+GF+ + Sbjct: 450 NRDVTEEKEREIERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAIIGFTALATTH 509 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 N E +Y+ IH S QHLL+LIN++LD+SRIE+G + + + L DI+ + Sbjct: 510 IG---NTELVLDYLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHLPDILHDLRT 566 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++Q K +++ + + D+ + QV+LN+ SNAVKFT +GG +++ V Sbjct: 567 IIQGSVHSKQQDLYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGGMINIRVSEK 626 Query: 397 SGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 R S+KDNG G++ V SF + ++ G GLG+ I ++I+ Sbjct: 627 PCRRDGYITVVFSVKDNGIGMSREFRKHVFDSFSREHTVTENGIGGTGLGMAITKNIVDM 686 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG + S+ +G E +L Sbjct: 687 MGGTIQVESETGKGTEFTIML 707 >gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 557 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 15/315 (4%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI--LSCQAE 220 F PV A+ D+ + +A F + + + Sbjct: 103 AFCQECPVRGAIGAAFRQKSEFTDLQSSLNIAIGEDEFIKCNVMISGVFMTLDGEDRMVL 162 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 I ++ + E +++AE + +KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 163 TVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLA----A 218 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + ++Y+ +H + + LL L+N+ILDLS+IEAG E S + + ++ + + Sbjct: 219 ATEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFH 278 Query: 341 LRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ + + + L V +D + QV+ N +SNA+KFT G + + Sbjct: 279 MKI-GYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTE-GSIRIGYKPCEN 336 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI+ ++ V F + G GLGL I ++I+ GG+ Sbjct: 337 G-LRFYVTDTGSGISADKLGGVFDRFVRLQSDKN----GTGLGLSICKTIVNKLGGEIGA 391 Query: 459 RSKLREGVEVIAILP 473 S + +G LP Sbjct: 392 ESVVGQGSTFWFTLP 406 >gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative [Marinobacter algicola DG893] gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative [Marinobacter algicola DG893] Length = 1126 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 12/347 (3%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 I TLL ++ + L A+ + PV + + ++ + Sbjct: 566 IGHFLTLLFLINGLS----GLLLALIYAKTPVNSPTEAALLSITLWKVFFVLIIITGVVC 621 Query: 199 FFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + + Q + I E + ++ AE N AKSR+L +S Sbjct: 622 WLFVLAHESRVVAEEESQRQTRLLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGIS 681 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELR+PLNAILG+++++E +T P + K+ +G I RSG++L +LI +LD+S+IEAG Sbjct: 682 HELRSPLNAILGYAQLMENDTAIP---DNRKDALGVIRRSGEYLADLIEGLLDISKIEAG 738 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R +L + + ++ + + M +L+A+EK + L V DEK +RQ+++NLL Sbjct: 739 RLDLHRDEVRIDLLMEQLVHMFRLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLL 798 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SNA+K+T G + +T+ + + +IKD G GIAE I + F + +S Sbjct: 799 SNALKYT-DNGSISLTLKYR-SQVAEFTIKDTGEGIAEENIERIFRPFERIRTPGQSRT- 855 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL I + + GG + S EG L + + PE Sbjct: 856 GTGLGLTITRLLTEIMGGDLSVESTPGEGSTFRVSLMLSSLHTPRPE 902 >gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 896 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + +LE+ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLALINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + + ++ + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPNLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHV------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + + S IS+KD G GIA + + +F Q A Sbjct: 630 TEK-GSVSLYFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731 >gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 617 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI E +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 935 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + N Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ GQ +G Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518 >gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1100 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 156/360 (43%), Gaps = 20/360 (5%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W E A +L L F + A S Sbjct: 603 AWGAPACAISADCVDES----VFAAMLAGRGQGVFVVRDLQSTPFALQDTLASAASPSTF 658 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + L G AL Y +++ K++ A + E +++ + + Sbjct: 659 VG---DLVFLDGRPVGALYVLFRGDYEPSENDGKLMGIVAATIRVEEERKISAQQLVKAK 715 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + AE N AKS FLA+MSHE+RTPLN I G ++ G ++ ++Y+ SG+ Sbjct: 716 EIAESANRAKSEFLANMSHEIRTPLNGIFGMLQL----VGGTKLDDEQRDYVDTALTSGR 771 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL +IN++LD S++EAG + + + +V + + ++A EK + + + D S+ Sbjct: 772 SLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQAAEKQLVMAVETDASVP 831 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGI 412 + +DE +RQ++ NL+ NAVKFT GR+ V ++S+ D G GI Sbjct: 832 PLILSDEARIRQILFNLVGNAVKFTPS-GRITVESWVQRADTTDQTMRLFLSVSDTGIGI 890 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E + +V ++F Q + G GLGL I + ++ GG+ + S EG + L Sbjct: 891 PENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIYVESD-GEGTRIHLFL 949 >gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 769 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 2/269 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + +EL A + ++RAE N AKS FLA+MSHELRTPL Sbjct: 500 RRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPL 559 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+++ + GPL + Y EY DIH SG+HLLN+IN+ILD+S+IEAG L Sbjct: 560 NAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHCE 619 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I L+ ++ E + + A EKNI I Q+I L ++ AD + M+QV+LNLLSNAVKFT Sbjct: 620 RIDLVPLIEESLRFTAIPAAEKNIVIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTD 678 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GGR+ V ++I D G GI + + F Q ++ G GLGL I Sbjct: 679 NGGRIAVRTRRI-DGAVLVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAI 737 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++S+ A HGG+ IRS+ G + +P Sbjct: 738 SRSLTALHGGRMKIRSREAVGTVISLRIP 766 >gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum WAL-14673] gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum WAL-14673] Length = 748 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 16/260 (6%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 ++ AE N AKS FL++MSH++RTP+NAI+G + + + E ++ + I Sbjct: 348 RAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIG---DGERVEDCLKKIDI 404 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL +IN++LD+S+IEA + EL+ A S+ ++ ++++ +A+ K + + K Sbjct: 405 SSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN 464 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGP 410 + +V D + Q+I+N+LSNAVK T GGR+ I D G Sbjct: 465 LNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDTGV 524 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G++E + F Q + +S +G GLG+ I + ++ GG + S+ EG Sbjct: 525 GMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVFRV 584 Query: 471 ILPNTRVLNFIPEDNHESTQ 490 L +P + E Q Sbjct: 585 EL-------ELPLASQEEVQ 597 >gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] Length = 583 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++ + + F+A++SHELRTPL + ++E + + ET ++G + + + Sbjct: 348 QKLDQMRKEFVANVSHELRTPLTTVKSYTETLLDGAIDE--KETAMHFLGVMEKEADRMT 405 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSV 361 L+ ++L+LSRI+ + +L ++L ++ E + + + ++ D + Sbjct: 406 ALVQDLLELSRIDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYFI 465 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D +RQ++ N+LSNA+K++ G + V + + I D G GI E ++ + Sbjct: 466 EGDLSRIRQILHNILSNAIKYSPEPGTLGVYMK-KENAYVIVEITDTGMGIPEEDLERIF 524 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ +M HGG I S+L +G +VI P Sbjct: 525 ERFYRVDKARSRKMGGTGLGLSIAKELMLLHGGDIKIESQLGQGTKVILNFP 576 >gi|255531133|ref|YP_003091505.1| ATPase [Pedobacter heparinus DSM 2366] gi|255344117|gb|ACU03443.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 787 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 91/444 (20%), Positives = 166/444 (37%), Gaps = 28/444 (6%) Query: 51 ILPLFVLLVANIGTWFTQNPI----FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106 +L L++ + + + VY+ + + + + Sbjct: 202 LLLTGCLMMGGLFFLGLYLMGSRDKAILLFALYSIVYSYRIIGIDNYVLHTVLPQMDWYL 261 Query: 107 RIWLLVGQIAIGLCWTLLT--LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 + + + +G+ L + P + + S +L++ L + Sbjct: 262 TVRMEYLSLFLGIGMFALYTRYLYPQDTSIIVIGTIFSLCFGFSLAVLCLKPLYFTQLIN 321 Query: 165 LSFFPVVVALSTQAIM--------SMHVLDISLAGMLATALSFFTYITY-----HLFKSN 211 ++ L + + ++ + + + + Y + Sbjct: 322 PFLVIMIFCLVYVPYVYTMAYRKKRPGAIYTLMSAVALMPVFAISLLHYWNVIPAFQLVS 381 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 LI V+ + R AE+ AKS FL++MSHE+RTPLNA++G S Sbjct: 382 FIFYISFFFLQSLILSHRVSFEQ-KKARAEAEQGLKAKSEFLSTMSHEIRTPLNAVIGMS 440 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ E KE + + S +LL+++N+ILD ++IEAG+ + + I Sbjct: 441 HLLLKNG----PREDQKEQLDVMLFSANNLLSIVNDILDYNKIEAGKVSFEHIEMDIPAI 496 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RV 389 + LQ A +K IE+ +DP+L + D QVI NL+ NA+KFT G V Sbjct: 497 AGNIVSGLQSSAHDKGIELTLHVDPALKNKLMGDPTRSSQVITNLVHNAIKFTNKGSVEV 556 Query: 390 HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + I +KD G GI++ + + F Q + G GLGL I + Sbjct: 557 RLIVAAQTETDITLNIQVKDTGIGISKDKQKVIFDRFTQVDSSTSRGFGGTGLGLSICKR 616 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 I+ + S G I Sbjct: 617 ILELQNSSLNLISDEGRGSTFYFI 640 >gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] Length = 848 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 130/263 (49%), Gaps = 18/263 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +I+ L+ +D +A+ + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 251 RQMISRLQQKTKETDLALTKAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRTDLDT 310 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + I +SG LL +IN+ILD S+I+AG+ L+ SL+D + ++ Sbjct: 311 ----RQRTFTDVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSS 366 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 R EK+IE+ +I P L + D +RQ++ NL+ NAVKFT G V V + W Sbjct: 367 RVVEKDIELAVRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQ-GHVMVEINWKDVEP 425 Query: 397 SGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 IS+ D G GI +I V F Q + +G GLGL IA + Sbjct: 426 EDGEGASSRRLALSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRL 485 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + GGQ + S + EG Sbjct: 486 VELMGGQIKLESTVGEGSTFSFT 508 >gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1462 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + D R++AE AKS+FLA++SHE+RTP++ ILG E+++ + + Sbjct: 698 ITLLKKQQQALDNARQKAESATAAKSQFLATISHEVRTPISGILGLLELMQEHQL----S 753 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E G +++S ++LL+++N++LD S+IEAG+ +L+ + I L ++ + + AQ Sbjct: 754 EELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQ 813 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 +K + DP+L+ ++AD+ + Q++ N L+NA+KFT G + V + Sbjct: 814 QKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQK 873 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D G GI + ++ F Q G GLGL IA ++ G + S Sbjct: 874 VSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSS 933 Query: 461 KLREGV--EVIAILP 473 + +G V LP Sbjct: 934 EEGKGSHFTVTVTLP 948 >gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] Length = 768 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E LI + + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ Sbjct: 283 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 342 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + NE ++++ ++ SG H++ L+NEILD S+IE G E + I+ Sbjct: 343 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 398 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ P+ AD+ +RQV+ NLL+NAVKFTA G V V Sbjct: 399 NSVYYTLCAEKGLQFKVYSTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 457 Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I +KD G GI E + F Q + G GLGL I + I Sbjct: 458 EHTREKANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 517 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG + S++ G L PE +YK Sbjct: 518 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 555 >gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction histidine kinase [uncultured prokaryote AT5] Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 13/297 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL---IAELEVAKSLSDETRKR---- 241 L+ ++ +A I + + L+ + D I + + E R+R Sbjct: 80 LSTIIVSAYGDMANIRTAMNRGAFDFLTKPIDFLDFESTITKTIRHVEVLREARRREAEN 139 Query: 242 --AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E + KS+FLA MSHELRTPLNAI+G +E++ E E + ++ +G Sbjct: 140 QRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNA-ARFGTEKALEPLRRVNAAGT 198 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL+LINE+LDLS+IEAG+ EL+ ++L ++ E I A++ + + +L Sbjct: 199 HLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNRLIVEAQDNLG 258 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEI 417 + AD ++Q++LNLLSNA KFT G V + V + +++ D G G+ + Sbjct: 259 AFTADPLRLKQILLNLLSNACKFTKE-GDVALRVRKVADGRDWVELAVADTGIGLTAEQQ 317 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F Q G GLGL +++ + GG + S+ +G LP Sbjct: 318 AKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVFTVRLPV 374 >gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] Length = 1045 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 140/319 (43%), Gaps = 8/319 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F L V+ L Q + D T + I + + Sbjct: 206 FTLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLGISIFELNGQC 265 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A + + + +E R +AEE KS FLA+MSHE+RTP+NAI+G S + Sbjct: 266 QAAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + ++Y+ IH S LL +IN+ILD S+IEAG+ + SL +++ Sbjct: 326 TEL----SAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVS 381 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A +K +E+ + + + D + QV++NL++NAVKFT G V+V VG Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVG 441 Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + D G G+ E + + +F Q + G GLGL I++ ++ Sbjct: 442 ERQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 453 GGQFLIRSKLREGVEVIAI 471 G+ + S+ EG Sbjct: 502 EGEISVISQPEEGSCFTFT 520 >gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 621 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 7/263 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 VA A+ + AKS FLA+MSHELRTP+NA+LG ++++ + P+ Sbjct: 248 RVAVGDLTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQKANLKPVE----H 303 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ + G L+ +IN+ILD S+I+ G L + L ++ + ++ A+ + + Sbjct: 304 EYLKTAYEVGDRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKL 363 Query: 349 EIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 ++ I P ++ W D +RQ++ +++ NAVKFT G V +T I+D Sbjct: 364 DLTAHIAPGCPTLFWGDNTRLRQLLRHVVGNAVKFTDS-GYVRITAKVVLPGEIQFKIED 422 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + +F Q +I+ G GLGL I++ + G+ S++ G Sbjct: 423 TGVGIGKENQEALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTT 482 Query: 468 VIAILPNTRVLNFIPEDNHESTQ 490 LP V+ P+ ++ + Sbjct: 483 FHIALPGEPVMEP-PQGEAKAPE 504 >gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 632 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L A S E ++AE+ N KS FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 389 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML----PHVENR 444 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY I + LL LIN+ILDLS+IEAG ++ + I + + E +QLR + Sbjct: 445 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLR 504 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ +++ D+ + Q++ N + NA+KFT + G + + Y Sbjct: 505 HNNVTCTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 563 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + S QG GLGL I +I+ GG+ + SK + Sbjct: 564 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 619 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 620 GSTFWFTLPYRQ 631 >gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] Length = 575 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + + +++ I + L+ L Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + E + + ++V E I +L+++A++KNI++ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV I +KD G GI E EI + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKL-DNLIVIKVKDTGIGIPEKEIERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ + S+ G E +P + + Sbjct: 518 YRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573 >gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] Length = 909 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL L ++ L + L V P+ ++T + LD + G L Sbjct: 177 VFVATLMLLFCLCLAMLFAYRLMRDV---TGPIRNMVTTVDRIRRGQLDSRVEG---YML 230 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + + E I +LE+ D +KRA+E Sbjct: 231 GELSILKNGINAMAMSLTAYHEEMQHNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAA 290 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN +LGF+ + + T ++Y+ I RS +LL++IN Sbjct: 291 RIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRT----TQRDYMQTIERSANNLLSIIN 346 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EAG+ L L + E +++L A +K +E+ D S+ V D Sbjct: 347 DVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNVIGDA 406 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVL 421 ++Q+++NL+ NA+KFT G + + VG S I ++D+G GI+E + + Sbjct: 407 LRLQQILINLIGNAIKFTEK-GYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQTQMF 465 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +F Q +I G GLGL I Q ++ GG+ S+ +G + Sbjct: 466 QAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIR 515 >gi|240140121|ref|YP_002964598.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240010095|gb|ACS41321.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 1071 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184 +E + I + ML + V+V + Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 536 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237 L +L + + + + + Q E + IA +V + + Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 596 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE NLAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHL LI+ +LD+SR+EAGR + + I L D + + + M++L+A+ + Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713 Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L +V A DEK +RQ++LNLLSNA+KFT G V + + + G+ +I+D G GI E + Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F +GS+ A G GLGL IA + GG+ + S++ EG L Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831 Query: 477 V 477 V Sbjct: 832 V 832 >gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 818 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 161/315 (51%), Gaps = 2/315 (0%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 F P + +A S + ++ G A + + +++ + + Sbjct: 499 GFRPALAGSGLRACWS--LPILTAEGKPLGAFAVYHTSARGPDVREMEMARRASHLAAIA 556 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A+ L ++ + AE + KS FLA+MSHELRTPLNAI+GF+EV+E E + Sbjct: 557 IASHEAERLLEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPI 616 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 Y DI SG+HLLNLIN+ILD+S++EAG+ EL E +++ C +++ RA E Sbjct: 617 AKAGYASDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAME 676 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + I++ ++ P L V D+ +Q++LNLLSNA+KFTA G V V V RG I++ Sbjct: 677 RRIDLRLEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAV 736 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI ++ V F Q G GLGL +++ + HGGQ I S EG Sbjct: 737 SDTGIGIRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEG 796 Query: 466 VEVIAILPNTRVLNF 480 LP +R+L Sbjct: 797 TTATLRLPPSRLLTA 811 >gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] Length = 852 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 7/247 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RA + + KS FLA+MSHE+RTPLNAI+GFS++++ + ++ Sbjct: 607 IQRYKDTEEELIAARDRALQADRLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LQAFSS 664 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++++ I+ + LL LIN+ILDLSRIE+G + S+ +L I++E +L Sbjct: 665 EEVQQFVETININCTLLLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMP 724 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + D ++QV+ NL++NA KFT G + + + Sbjct: 725 QGVELCTDFPEGADKYITTDAVRLKQVLNNLINNAKKFTVQ-GSITLGYRVDESGYTTVF 783 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI++ + + F + S QG GLGL I Q+I+ G + SK Sbjct: 784 VEDTGAGISDEDQKHIFERFYKAD----SFTQGAGLGLSICQTIVERIHGTITVTSKPGR 839 Query: 465 GVEVIAI 471 G Sbjct: 840 GTRFEVR 846 >gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] Length = 785 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 11/256 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSDIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + G + Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRFGFGRMDKD-IRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I + I+ GG+ + S+L + Sbjct: 574 VKDTGIGIEPEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLNF 480 G +P Sbjct: 630 GSTFYFTIPYEETGEH 645 >gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621] gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621] Length = 883 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 134/283 (47%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L++ KS +E + KS FLA+MSHELRTP Sbjct: 438 AEELRTTNEQLESRTEEAEQKTADLQITKSELEEKASEILRSSKYKSEFLANMSHELRTP 497 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 498 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 556 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + + + + D K + Q+I NLLSNA KF Sbjct: 557 EATNISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 616 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA + + +F Q A Sbjct: 617 TEK-GSVSLHFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGA 675 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S + EG +P Sbjct: 676 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718 >gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 790 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 95/459 (20%), Positives = 180/459 (39%), Gaps = 39/459 (8%) Query: 44 SLFRVSPILPLFVLLVANIGT-WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102 ++ I+ L V I +W+ ++ + A Sbjct: 9 TMGIALWIVSLIAAAVMVIVWRINRHESGPGLWAGSSVVLAAC--WTPLWFTEGLGSAVV 66 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 + G + + +L G +++ L AL + L Y Sbjct: 67 FINNTGAFIAGLLLLE---GVLRFKGIGDQHRRLPWHGLYLAVVLNLIFFALDHHQLRYL 123 Query: 163 VFLSFFPVVVALSTQAIMSM---HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 + + V+AL+ ++ + + + Y + ++ Sbjct: 124 ILDANLFGVLALTAFFLVWRSSEGLERFIYGATAVVFVMMAAVLAYRWGLAATGVIGVDD 183 Query: 220 EKDDLIAELEVAKS---------LSDETRKRAEEENLA-----------KSRFLASMSHE 259 + + +A L+ RA++E+ KS FLA+M+HE Sbjct: 184 RVNPATGPIILASIPWTLGWTYGLAMAANLRAQQESERARAEAERANRAKSEFLANMNHE 243 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NA+LG ++++ + + +++G IH S + LL +IN+ILD+S+IE+G+ Sbjct: 244 IRTPMNAVLGRTQLLLDTDL----DAQQLDHLGKIHNSSKMLLGIINDILDISKIESGKL 299 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 E+ L +++ + + A EK +++ I P L + D + QV+ NLLSN Sbjct: 300 EIEPHRFDLREVIDQVDTLFSAAASEKGLDVTYDIQPDLPRMLIGDSLRLTQVLSNLLSN 359 Query: 379 AVKFTAIGGRVHV---TVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A+KFT GG V + VG ++D+G G+ ++ + F Q + Sbjct: 360 AIKFTPRGGTVELNLHEVGEADDDAAHVRFQVRDSGIGMDAEQLKRIFQPFEQADASTTR 419 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + ++ N GG+ + S+ +G L Sbjct: 420 QYGGTGLGLEIGRRLVTNMGGRLEVTSRPGQGSRFFFTL 458 >gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061] gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061] Length = 612 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + +G + E ++ + ++ Sbjct: 372 EKIDAERREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPRFLSVTQNETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + + I + I ++ +E++++ + + V Sbjct: 430 RLVNDLLQLSKFDSKDYQFNREWTNFIKFISLVIDRFEMT-KEQHVDFIRNLPQREIYVE 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG + TV G S+KD G GI + ++ + Sbjct: 489 IDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDEGIGIPKKDMDKIF 548 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G V LP Sbjct: 549 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600 >gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 697 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 6/324 (1%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + L F +V + +++L A + + K+ ++ E Sbjct: 229 MALIFVALVATMGIIFYTRLNILRPLADLGRQVAGATRGILPSRYGKATSNEVAKLGEAL 288 Query: 223 DLI-AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L AE R AE + K FLA++SHELRTPLNAILG+S++I G Sbjct: 289 ALADAEKRQLLENETIARNEAERASRLKDEFLATLSHELRTPLNAILGWSQLILS---GN 345 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L E + I R+ + LI ++LD+S I +G+ L + ++V + ++ Sbjct: 346 LKKEDIHRGLETIERNARVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKP 405 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ K + + + + S+ D ++Q++ NLLSN++KFT GG++ VTV + Sbjct: 406 TAQAKGVILKKTLGKKFDSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNL-FL 464 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I I D+G GI +P V F QG ++ G+GLGL I + ++ HGG S Sbjct: 465 EIRISDSGSGITSAFMPYVFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESP 524 Query: 462 -LREGVEVIAILPNTRVLNFIPED 484 +G I LP ++ + Sbjct: 525 GEGQGSSFIVNLPVAPPVSETKSE 548 >gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] Length = 1348 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 107/386 (27%), Positives = 185/386 (47%), Gaps = 8/386 (2%) Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL 154 DI + + + ++ G+ P + + ++L Sbjct: 971 QPDISELKARIAEMRTIIDTATDGVVLIGSDGTIRSISRPAEALFGFDSDEVTGKPFASL 1030 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 A + + + A F + + + Sbjct: 1031 FAIESQRAARDYLTGLSEPGVASVMNDGR------EVIGREAQGRFIPLFMTIGRLPNDS 1084 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 C +D I + + A+ + R AE + K+ FLA +SHE+RTPLNAI+GFSE++ Sbjct: 1085 GFCAVVRD--ITQWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAIIGFSELM 1142 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E GP+ N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++ A+SL D + E Sbjct: 1143 VDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAE 1202 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + M+Q +A + + I L V AD + +RQ+ LN+LSNA+++T GG+V V+ Sbjct: 1203 TVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTA 1262 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + + + ++D G G+++ EI L F Q + + G GLGLP+ ++++ + Sbjct: 1263 YETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRA 1322 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480 +F I S EG V P+TRVL Sbjct: 1323 RFTINSTPGEGTLVEVAFPSTRVLAE 1348 >gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum WAL-14163] gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum WAL-14163] Length = 748 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 16/260 (6%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 ++ AE N AKS FL++MSH++RTP+NAI+G + + + E ++ + I Sbjct: 348 RAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIG---DGERVEDCLKKIDI 404 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL +IN++LD+S+IEA + EL+ A S+ ++ ++++ +A+ K + + K Sbjct: 405 SSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN 464 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQYISIKDNGP 410 + +V D + Q+I+N+LSNAVK T GGR+ I D G Sbjct: 465 LNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDTGV 524 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G++E + F Q + +S +G GLG+ I + ++ GG + S+ EG Sbjct: 525 GMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVFRV 584 Query: 471 ILPNTRVLNFIPEDNHESTQ 490 L +P + E Q Sbjct: 585 EL-------ELPLASQEEVQ 597 >gi|117924080|ref|YP_864697.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607836|gb|ABK43291.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 911 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 147/322 (45%), Gaps = 13/322 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 LP + + HV I + ++ + +LS Sbjct: 448 LPQQDHATLRALFAKAVGHIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG 507 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + I ++ + E RAE N AKS FLA MSHE+RTPLN +LG +++ Sbjct: 508 YD----ITHKRALEAENREALARAESANQAKSEFLAIMSHEIRTPLNVLLGMGDLLHESL 563 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + E + + ++G+HL+ LI++ILDLS+IE G L+ + + + Sbjct: 564 L----TEEQTGQLELLIKAGKHLVVLIDDILDLSKIEFGGLTLTREPLQPHRLFLLICDI 619 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++L+AQEK + I L V DE +RQ+++NLL NA+KFT G V + + + Sbjct: 620 VRLQAQEKGLTFNCDIPTELPPWVLGDEGRLRQIMINLLHNAIKFTQQ-GHVTLKIAYQP 678 Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I+I D+G GIA + + F Q +I G GLGL IA++++ GG Sbjct: 679 AGSLFSITISDSGIGIAAKHLNHIFDKFSQADSSISRRYGGTGLGLAIARNLVTLMGGHL 738 Query: 457 LIRSKLREGVEV--IAILPNTR 476 + S + +G LP T+ Sbjct: 739 TVESCVNQGSHFQLTLELPPTQ 760 >gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 773 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 2/242 (0%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RAE N AKS FLA+MSHELRTPLNAI+GFSE++E GPL + Y+EY DI+ SG+ Sbjct: 530 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSSRYEEYATDINSSGK 589 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +LL +IN+ILD+S+IEAG++ L + I L ++ E + ++ L+A +K I + +I +L Sbjct: 590 YLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADAL- 648 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +++AD + ++Q+++NLLSNAVKFT GG + V T ++I+DNG GI + + Sbjct: 649 TLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 707 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q G GLGL I++S+ GG IRS G V +P + Sbjct: 708 LGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRIPVKKATP 767 Query: 480 FI 481 + Sbjct: 768 AV 769 >gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 6/272 (2%) Query: 221 KDDLIAELEVAKSLSDET-RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + L E S+ R AE + K F+A++SHELR+P+NAILG++ ++ Sbjct: 531 AERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILRGRAP 590 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P T + I R+ + ++++E+LD+SRI +G+ L + L ++R + + Sbjct: 591 EP---PTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAI 647 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 QL A+ K I + IDP SS+ D + QV+ NLLSNAVKFT GGR+ V + +G Sbjct: 648 QLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRR-AGA 706 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S+ D G GIA +P + F Q + G+G+GL I + ++ HGG + Sbjct: 707 HAALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVA 766 Query: 460 SK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S+ G LP V P+ ++ Sbjct: 767 SQGEHLGATFTVTLPLAGVSQEAPDAAARPSE 798 >gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105] gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105] Length = 418 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +++AE + AKS FLA++SHELRTPLNAI+GFS+++E + L++ + + +I Sbjct: 24 LVLAKEQAESADRAKSEFLATISHELRTPLNAIIGFSKLLEEQ----LDDPELRGDVRNI 79 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S L +++++L+ SRI+A +L S L +VR+ + + A +KN+E Sbjct: 80 SSSATSLHLILSDVLEYSRIQANGLKLDPSPFDLDAMVRQVYSLNRNLALKKNLEFSLVN 139 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR--GQYISIKDNGP 410 + V D +RQV+ NL+SNA+KFT IG ++ + + +I + D+G Sbjct: 140 ETEGPCFVHGDANRLRQVVQNLVSNALKFTDIGYVKMRLMTSQPAQGRIEVFIEVVDSGI 199 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI++ + + F Q S I G GLGL I + ++ GG+ + S+L G Sbjct: 200 GISQPALQKLFQRFSQASREINRQYGGTGLGLAICKGLVELMGGRIDVSSELGVGSVFTV 259 Query: 471 I--LPNTRVLNFI 481 LP L+ Sbjct: 260 SLNLPLASALSPA 272 >gi|332992628|gb|AEF02683.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2] Length = 687 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 136/300 (45%), Gaps = 25/300 (8%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L +FF + + K + E ++ E +A+E N Sbjct: 147 WLATIFLLGVEAFFIFAPM-----------DRKIKKTIQHLYEASEKAETEA-LKAQEAN 194 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FL+SMSHELRTP+N + G E+ N Y+ +G+ LL LIN Sbjct: 195 RAKSEFLSSMSHELRTPMNGLFGMIELAMDNPSKSEN------YLRKAKTAGRQLLTLIN 248 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADE 365 +ILDLS+IEAG+ + + + L+ ++ E + + ++ Q K ++ +L + D Sbjct: 249 DILDLSKIEAGKIVVGKGPVDLLQLLDEVVSIQRIYCQNKGLDFHYNKQQTLAPIIQGDI 308 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLT 422 + Q++ NLLSNA+KFT G V ++V SG S+KD G GI ++ T+ Sbjct: 309 TRIAQILHNLLSNAIKFT-ESGSVTLSVSQAVTASGNTLLFSVKDTGIGIDSDKLSTIFQ 367 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q + G GLGL IA+ + G L S L G E LP V +P Sbjct: 368 KFEQADQSTTRHYGGTGLGLSIAKELAQLMDGNILATSTLGAGSEFTLTLPV--VEESLP 425 >gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1023 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 16/297 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + +A + L + + + + AE N AKS FL++MSHE+RT Sbjct: 226 LKRQERERLETARELEAYRGHLEELVATRTAELEAAKVAAEGANRAKSAFLSNMSHEIRT 285 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G+S +I E + P E + ++ S QHLL +IN+ILDLS+IEA + L Sbjct: 286 PMNAIIGYSHLIRQEPLTPRQTEQ----LNRLNDSAQHLLQIINDILDLSKIEAEKLTLE 341 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 ++ ++ + Q K + + +D + D + Q++LNL+SNAVKF Sbjct: 342 ARDFEPARVLDHVFNLVADQIQAKELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKF 401 Query: 383 TAIGGRVHVTV--------GWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T G++ + V G ++ +++D G G+ ++ + +F Q + Sbjct: 402 TER-GQIAIAVYPMSVPLAGAADPETLWLRWTVRDTGIGMTAEQLARLFRAFEQADGSTT 460 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDNHES 488 G GLGL I++ + GG+ S+ G E +P P+ E Sbjct: 461 RRYGGTGLGLAISKRLTELMGGRIGASSQPGTGSEFWLEIPFEPAREPAHPDPKLED 517 >gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] Length = 891 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 147 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 200 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ +Y+ I RS +LL +IN Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPPQTDYLQTIQRSANNLLCIIN 316 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + E +I+L A EK +E+ ++ + V D Sbjct: 317 DVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQVIGDA 376 Query: 366 KGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ++Q+I NLL NA+KFT G V V + I D G GI+E + + Sbjct: 377 MRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTGIGISESQQTQLFQ 436 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 437 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTFKFHL 486 >gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 597 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F+A++SHELRTP++ + G+SE I + E E I+ + L+ Sbjct: 366 DKLRKDFIANVSHELRTPISMLQGYSEAIIDGI--ASSEEEKTELAQIIYDESLRMGRLV 423 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 NE+LDL+R+EAG +L+ IS D + + Q A+E I++ I+ ++ V+ADE Sbjct: 424 NELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIKLSGDIEENIQYVYADE 483 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV+ NL+ NA++ T GG V + + +G ++I+D G GI+E ++P V F Sbjct: 484 DRIEQVLTNLIDNAIRHTPEGGEVTLQMEVL-DQGVKVNIQDTGIGISEEDLPFVFERFY 542 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + A G GLGL I ++I+ H G+ + SKL EG LP Sbjct: 543 KADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFSFFLP 590 >gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1650 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 28/271 (10%) Query: 225 IAELEVAKSLSDETRKRAEEE------------------NLAKSRFLASMSHELRTPLNA 266 I E + D R+ E N AKS FLA+MSHE+RTP+NA Sbjct: 1001 ITERRRLEQELDRHRRHLEALVDERTAQLTEARARAEAANQAKSAFLANMSHEIRTPMNA 1060 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LGF ++E + P + + ++ IH +GQ LL+LIN+ILD S+IEAGR EL + Sbjct: 1061 VLGFCYLLEQHALDPASADLVRK----IHNAGQALLDLINDILDFSKIEAGRLELEAAPF 1116 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L +++ ++ A +K +E+ + + D +RQV++NLL NA+KFTA Sbjct: 1117 RLSELLDTLAGIMTAAAGDKPLELILTPPEADIEGLIGDAGRLRQVLINLLGNAIKFTAR 1176 Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V + + + +++D G GI + F Q ++ G GLG Sbjct: 1177 -GEVELRIECLAEHDDAVELRFAVRDTGIGIDPESQERLFQPFTQADVSTTRRFGGTGLG 1235 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I++ ++ GG I S+ +G L Sbjct: 1236 LSISRQLVRLMGGTLEIESQPGQGSTFHFSL 1266 >gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1] gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1] Length = 935 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + N Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 + L + + + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ GQ +G Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518 >gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202] gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202] Length = 935 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + N Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + + + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ GQ +G Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518 >gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1097 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 14/266 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ++ + AE+ + AKS FLA+MSHELRTPLN ++G ++++ + Sbjct: 551 ATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTPLNGVIGMTQLLMNTELDS--- 607 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ H SG+ LL LI++ILDLS++EAGR EL + L +++ E + + Sbjct: 608 -DQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQPFRLGNLITEVEDSTRPALE 666 Query: 345 EKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 + + P + D + +V++NLL NA KFT G + + Sbjct: 667 ADGLTFQNTRQFPEGLVLRGDRVRLLRVLMNLLGNAGKFTPE-GSISLVTRMEQPSEDTA 725 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + SI D G GI + + +F Q + G GLGL I + ++ G+ + Sbjct: 726 DLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGLGLAICKHLVEAMEGEIGVE 785 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485 S+L G + L +PE Sbjct: 786 SELGHGSTFWFRI----SLPIVPEAE 807 >gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus PHEA-2] Length = 935 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + N Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ GQ +G Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT 518 >gi|288957487|ref|YP_003447828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288909795|dbj|BAI71284.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1064 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 92/406 (22%), Positives = 143/406 (35%), Gaps = 34/406 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R + + + + A L LP Sbjct: 202 RHAVAQIVAVCPPGDGVALVSRLTDGPRPAEPLVLGGAGRHAGMEGTLLFLALPPDA-AQ 260 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 +A H + + + + L ++L K + Sbjct: 261 VVRAALADGRNRYERGHSVLVFRSATRRHDTVVYLGHGRALSADERRLLEVFCAKVAIGF 320 Query: 227 ELEVAKSLSDETRKRAE-------------------------EENLAKSRFLASMSHELR 261 + E + E N AKS FLA+MSHE+R Sbjct: 321 DNVHLYEELTELNRSLEGQVAQRTRDLVAAREAAEAARSEAEAANQAKSLFLATMSHEIR 380 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N I G E++E ++ +E + + S LL +IN+ILD S+IEAGR +L Sbjct: 381 TPMNGIQGMLELLEHTSLTG----DQRELVSVVRESAGALLTIINDILDFSKIEAGRLDL 436 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 ++L ++V L A+ K + + IDP L V D +RQV+ N+ NAV Sbjct: 437 ERVPVALANVVEGVADTLAPSARAKGLSLVTYIDPDLPAEVLGDPVRIRQVLFNIAGNAV 496 Query: 381 KFTAIGG-RVHVTVGWTSGRGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G V V + G I + D G GIA+ + + F Q ++ G Sbjct: 497 KFTQSGSVTVRVELAHFDGDRVTIRVAVIDTGIGIAKEDQSRLFRPFTQAEVSTTRRFGG 556 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 GLGL I + + GG + S++ G V + E Sbjct: 557 TGLGLSICRRLAELMGGDVGVTSEVNAGSTFWFTFAAELVSTTVDE 602 >gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 761 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+ + LL LIN+ILDLSR+E+G+ L ++ E QL Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E +E+ ++ V D ++QV+ N ++NA+KFT G ++ VG+ T G Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I ++D G GI E + V F + QG GLGL I Q I GG+ ++S+ Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744 Query: 462 LREGVEVIAILPNTRV 477 +G LP R+ Sbjct: 745 YGKGSRFTLTLPKERI 760 >gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501] gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501] Length = 1068 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 136/233 (58%), Gaps = 10/233 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLASMSHELRTPLNAILGF++V++ N +K+ + I RSG+HLL LI Sbjct: 599 NCAKSEFLASMSHELRTPLNAILGFTQVMQR---DQELNPDHKQNLEIIGRSGEHLLELI 655 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+IL++++IEAGR + + L ++ ML L+A+EKN+++ + +L + D Sbjct: 656 NDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETD 715 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI----SIKDNGPGIAEGEIPT 419 E +RQV++NLL NA+KFT GG + + G Q I ++D GPGIA E+ Sbjct: 716 ESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQ 775 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +FGQ S +G GLGLPI+Q + GG+ + S L G + Sbjct: 776 LFEAFGQTETGRNSN-EGTGLGLPISQKFVQLMGGEISVSSVLGRGSLFTFTI 827 >gi|291523437|emb|CBK81730.1| amino acid-binding domain sensor hybrid histidine kinase [Coprococcus catus GD/7] Length = 959 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + L V ++ A K A E A+ +++ + A+ N AK+ FL Sbjct: 530 VVTVLALLIFGWLLTIMAVTMVRLSARKKAQKAVQEKAEEMAELA-EHAQAANKAKTAFL 588 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 + MSH++RTP+NAI+GF+ + M ++ K + I S +HLL+LIN+ILDL+R Sbjct: 589 SHMSHDMRTPMNAIIGFTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDILDLTR 644 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372 IE G+ + + + +I + + + ++I + + + + +V AD +R V+ Sbjct: 645 IENGKVKYNPVPADVKNITDSALDITKGFLTNRDINFKIQREEAKIPNVLADPARLRDVL 704 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 +N+LSNA KFT GG + G I D G G++E V F Q Sbjct: 705 VNILSNAAKFTPDGGTITFEARCLEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQE 764 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +++ GVGLG+ I + + GG ++SK EG +P Sbjct: 765 DSDVRTQYHGVGLGMAIVKKYVDMMGGTISVQSKKHEGTTFTVDIPLE 812 >gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 761 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+ + LL LIN+ILDLSR+E+G+ L ++ E QL Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E +E+ ++ V D ++QV+ N ++NA+KFT G ++ VG+ T G Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I ++D G GI E + V F + QG GLGL I Q I GG+ ++S+ Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744 Query: 462 LREGVEVIAILPNTRV 477 +G LP R+ Sbjct: 745 YGKGSRFTLTLPKERI 760 >gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] Length = 640 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 95/273 (34%), Positives = 139/273 (50%), Gaps = 11/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAE--LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + AE+ + AE + AK D+ R AE N KS FLA++SHE+RTP Sbjct: 227 QAREDTINRERHNAEQRAVEAEEANKRAKVEFDQ-RLVAESANKMKSEFLANVSHEIRTP 285 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +NAILGFSE++E E + + E Y+ I+ SG+ LL+LIN+ILDLS++EAG+ EL Sbjct: 286 MNAILGFSELLEKEDIDKKSME----YVEAINSSGRSLLHLINDILDLSKVEAGKLELIY 341 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + + L +V E + +KN++ ++D + V DE +RQ++ NL+ NAVKF Sbjct: 342 TKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVKF 401 Query: 383 TAIG-GRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G +V + + D G GI E + +F Q S I G G Sbjct: 402 TEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGTG 461 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I + + GG + S EG E L Sbjct: 462 LGLSICKELSQLMGGSINLVSAKGEGSEFTVSL 494 >gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 590 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 6/239 (2%) Query: 239 RKRAEEEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R E+ N + F+A++SHELRTPL+ + G+SE + + + + E +E I Sbjct: 348 RDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALVDDFID--DPEQRRELAEIILE 405 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 + L+N++LDL+++E+GR+ + + + ++++ AQE+ + ++ Sbjct: 406 ETLRMRRLVNDLLDLAQLESGRFVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQV 465 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V AD + QV+ NL+ NA + T G V + S I+++D G GI Sbjct: 466 DDPVIVDADVDRLEQVLTNLIDNAFRHTQPPGSVTIRFS-VSQDTARIAVEDQGAGIPPE 524 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +IP + F + A G GLGL IA++I+ H G + S+L +G +LP Sbjct: 525 DIPYIWERFYKVDKARTRNRGGTGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLPL 583 >gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] Length = 1053 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 8/318 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L + L + + + T I + + Sbjct: 206 LTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A + + A+ +E + +AEE KS FLA+MSHE+RTP+NAI+G S + Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P ++Y+ IH S LL +IN+ILD S+IEAG+ + SL +++ Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A +K +E+ + + + D + QV++NL++NAVKFT G V V VG Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++ D G G+ E + + +F Q + G GLGL I++ ++ Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 453 GGQFLIRSKLREGVEVIA 470 G+ + SK G Sbjct: 502 EGEISVTSKPDAGSCFTF 519 >gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Bradyrhizobium sp. ORS278] Length = 2117 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 24/372 (6%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L+ L + + + +++LS F FL + + +I + Sbjct: 1312 ALLRAVPKNLVVLPVLFENQVKAVIELASLSPFTTSQMTFLEQLTDSIGIVLNSIEATMQ 1371 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + L A + L ++N ++ + + E+E ++ R+ EE Sbjct: 1372 TEGLLKQSQQLA-AELQAQQRELQQTNEQLEQKAQQLAERNVEVERKNQEIEQARRALEE 1430 Query: 245 -------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN+IL + + G L + E+ IH + Sbjct: 1431 KATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTVKQV-EFARTIHGA 1489 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LLNLI++ILDLS+IE+G + I +++ + A+ + + +DP+ Sbjct: 1490 GTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSFNIDVDPN 1549 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYI 403 L+ + D K ++QV+ NLLSNA KFTA GG V + V G Sbjct: 1550 LARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSADHPVLNSTPAVIAF 1608 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + + + +F Q G GLGL I++ + GG+ +RS Sbjct: 1609 EVTDTGIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELANLLGGEIHLRSAPG 1668 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 1669 KGSTFTLYLPLK 1680 >gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 382 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 4/243 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVI-ELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS F +MSHEL+TPL ILG ++I + ++ ++ ++I I ++ LL LIN Sbjct: 119 EKSEFFYNMSHELKTPLTVILGAIQLIEQKNSVIEVDRRKSSKHITTIKQNCYRLLRLIN 178 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +LDLSRIE+G + + +++ +V E + + A++K++ I D Sbjct: 179 NMLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISAVDID 238 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + ++ILNLLSNA+KFT GG++ +TV +IS+KD G GI + + V + Q Sbjct: 239 KIERIILNLLSNAIKFTNPGGKISITVSA-KNDKVHISVKDTGIGIPKDMLHNVFERYQQ 297 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 ++ +G GLGL I +S + H G ++S+ G E LP + + + NH Sbjct: 298 VDSSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPIKHIESS--DSNH 355 Query: 487 EST 489 +T Sbjct: 356 STT 358 >gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 956 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 11/278 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ ++ +F + + +D+ E A+ + ++AEE N AKS FLA+MSH Sbjct: 177 FWARVSARVFATPDHRNAVLGVLEDITPSYE-ARQAIEHAHQQAEEANRAKSSFLANMSH 235 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAI+G S +++ + NE + Y+ I S QHLL +IN+ILD S+IEAG+ Sbjct: 236 EIRTPMNAIMGMSYLVQKTEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGK 291 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 + L ++ ++ +A K +E+ +D + + D + Q+++N + Sbjct: 292 LGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYAN 351 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT G + + V + +++D G GI+E + + SF Q + Sbjct: 352 NAVKFTER-GEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTR 410 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I++ + G+ + S +G Sbjct: 411 KFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 448 >gi|254562560|ref|YP_003069655.1| integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254269838|emb|CAX25816.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 1059 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184 +E + I + ML + V+V + Sbjct: 465 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 524 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237 L +L + + + + + Q E + IA +V + + Sbjct: 525 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 584 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE NLAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS Sbjct: 585 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 641 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHL LI+ +LD+SR+EAGR + + I L D + + + M++L+A+ + Sbjct: 642 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLRFRFTRPEI 701 Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L +V A DEK +RQ++LNLLSNA+KFT G V + + + G+ +I+D G GI E + Sbjct: 702 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 759 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F +GS+ A G GLGL IA + GG+ + S++ EG L Sbjct: 760 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 819 Query: 477 V 477 V Sbjct: 820 V 820 >gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 579 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 8/271 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + ++ K++L +++ ++ AE+ N +KS+FLA MSHELRTPLN Sbjct: 167 RFRPLLERAINDIEHKEELQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLN 226 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG +++ + ++ ++ + + S + LL +IN+ILDLSRIE+G +EL Sbjct: 227 AVLGLIDLLRDD-----SDAYQQDMLEQMENSAELLLVIINDILDLSRIESGHFELQRHW 281 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 ISL ++ + AQ K+I K W D + Q++ N++ NA+KFT Sbjct: 282 ISLSRKLQHALEYHSQVAQAKDITFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTH 341 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V V++ T+ I +KD+G GI I + + F Q +I G GLGL I Sbjct: 342 H-GFVDVSL-VTARDRLEIEVKDSGIGIDNERIEHLFSPFIQADTSITRNYGGTGLGLAI 399 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + ++ GG + SKL EG +P Sbjct: 400 TKHLVELMGGSITVSSKLGEGSLFTISIPLQ 430 >gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297] gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297] Length = 1120 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 166/326 (50%), Gaps = 9/326 (2%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 L ++ + +L + S + S + ++ + + + + Sbjct: 575 LVVNLMLGALLVLVYRH--IVLQAGTSVPLLASGLWSLFFILIIVTGVVIWLFLLAHESR 632 Query: 209 KSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + + Q ++ I +V + ++ AE N AKSR+L+ +SHELRTPL +I Sbjct: 633 MNAQRESNVQTKRLLQEIEAHQVTDAALQTAKELAENANAAKSRYLSGISHELRTPLQSI 692 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG+++++ + P + + + IHRSGQ+L +LI +LD+S+IEAG+ +L ++++ Sbjct: 693 LGYTQLLNDQ---PDTTPSSRTRLNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVA 749 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 ++V++ M +++A+ K IE I +L V DEK +RQ+++NLLSNAVK+T Sbjct: 750 FPELVQQIADMFRMQAKAKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYT-DD 808 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V +T+ + + +++D G GIAE + V + F + S G GLGL I + Sbjct: 809 GYVRLTLRYR-SQVAEFTVEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVK 867 Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG + S + +G L Sbjct: 868 LLVEIMGGDIQLSSSIGQGSRFTVSL 893 >gi|294054561|ref|YP_003548219.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613894|gb|ADE54049.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1071 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 145/330 (43%), Gaps = 13/330 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 P+ + + +V+ + + + + T + L + + Sbjct: 746 PWFILSTGLAIVITAVAAYQLRIRSMRRQRVLLQRTVKERTQELELLLAHVEAQNKALMM 805 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ L + + + + AE + K+ FL +MSHE+RTP+NAI+GF E+++ + + Sbjct: 806 HREHLESMVNTRTKELEIAKNEAELSDRIKTAFLQNMSHEIRTPMNAIVGFLEMLKADDL 865 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E + ++ I + Q LL LI++ILD++R+EAG + + L D++ E + Sbjct: 866 ---TREEHDDFSNIIRSNSQTLLVLIDDILDMARLEAGELRIDREPVLLNDLMYELEAVF 922 Query: 340 -QLRAQEKNIEIFQKIDPSLS----SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 Q R Q EI D + + D +RQ++ NLL NA+KFT GR+ + Sbjct: 923 EQERHQLTKSEIKLYFDETYLISDFKLMTDPTRLRQILGNLLGNALKFTDK-GRIWFSYR 981 Query: 395 WTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 ++ D G GI E + + F +G + +G GLGL I + + Sbjct: 982 LLDEDHENPQIEFTVGDTGIGIPEEHLNVIFKRFRKGDGSDTGLYRGAGLGLAIVEKLTT 1041 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GG+ ++ S +G +LP R + Sbjct: 1042 IMGGRVVVESTPGQGSIFTILLPYERPPSA 1071 >gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 579 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 5/302 (1%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + + + A + F + + L + A L Sbjct: 278 VLNNGIIRSAVIMPMFAPGAKRVGVFVLGREEPHRVSQHELRFASTLAVQAAVSIHTAFL 337 Query: 235 SDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +E + + A+E + +S+ L ++SHELRTP+ AI GF+ ++ + E +++I Sbjct: 338 FEEAKTIEAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWIN 397 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 +I ++ + L L+ ++LDLSR+E+G + + D++ E LQ+ A+ +N + Sbjct: 398 EIEQNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRN--LVV 455 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 ++ +L + D + + QV+ NL+ NA KF+ G + V + + D G GI Sbjct: 456 QVSDTLPLIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENG-IRVGVLDEGEGI 514 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q A ++G GLGL I ++I+ HGG+ + S +G L Sbjct: 515 PPEYHDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTL 574 Query: 473 PN 474 P Sbjct: 575 PV 576 >gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] Length = 1071 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 138/281 (49%), Gaps = 13/281 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E +L +LE + + + A+ N AKS FL+ MSH++RTP+N I G +E+ Sbjct: 523 TELRELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIRTPMNVITGMAEIAAAHI 582 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + K+ + I S HLL LIN++LD+S+IE G + +S + + L D ++E I + Sbjct: 583 G---DQDRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSISMAPMCLPDELQEIITI 639 Query: 339 LQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + ++ N ++ P + +D RQ++LNLLSNA KFT GR+ + + Sbjct: 640 VLPGIRKMNQRFDVYLEGPGWENFMSDALRFRQILLNLLSNASKFTPKDGRIILKIEIQE 699 Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++ DNG G++ + + F + + +G GLG+ I + ++ Sbjct: 700 TESAKKAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQIEGSGLGMAITKRLIDLL 759 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GG ++S+L G ++P ++ + + E ++ Sbjct: 760 GGTITVKSQLGVGTVFDVLMP----MDVLADSEEEQKDFRG 796 >gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 779 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 130/257 (50%), Gaps = 9/257 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + A + S E+ +AE + AKS FLA+MSHE+RTP+N +LG +E++ + P Sbjct: 207 RPMEVAIRRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTP 266 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 K + I +SG LL +IN+ILD S+I AG+ L + L + V + ++ Sbjct: 267 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSA 322 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R EKN+E+ ++DP L V D RQ+I NLL NAVKFT G V + VG Sbjct: 323 RVAEKNLELIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEK-GHVLIDVGGEIVND 381 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I ++D G GI ++ V F Q + +G GLGL IA ++ G+ Sbjct: 382 VVQLKIRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 441 Query: 458 IRSKLREGVEVIAILPN 474 + S++ G +P Sbjct: 442 VESEIGRGSVFWFAVPL 458 >gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 764 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 162/361 (44%), Gaps = 18/361 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W ++ + G L A L + + ++ + ++ VV + T Sbjct: 260 LVWAVIRFGQFGATNLISLVTM-LAALGTVRGLGSFASEDINESLLRLQLFTVVIVVTNL 318 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + + A HL + + ++ + + LE E Sbjct: 319 SLMATLREKKEAFNNLRQSKL------HLQEKSSQLEQSKIILKENAFLLEQQNLELIEA 372 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE N K+RFL+SMSHELRTPLNAILG E+++ +E + + I SG Sbjct: 373 KQAAENANRTKTRFLSSMSHELRTPLNAILGLVELLKDSD---NLDEYERGDLQTISDSG 429 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 HLL+LI +ILD+SRIEAGR EL + ++ ++Q + IE + P L Sbjct: 430 IHLLHLIEDILDISRIEAGRVELHFQEVDFPKFLQGIKGIIQAQINTDAIEFICEFPPKL 489 Query: 359 SSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSG-----RGQYISIKDNGPG 411 +V DEK ++QV+LNLL NA KFT G + + + ++D+G G Sbjct: 490 PAVVSIDEKKLKQVLLNLLHNAAKFTEKGQIIFRLKLHSFPDLSETYTLLNFEVEDSGIG 549 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I ++ + F Q A K QG GLGL I+Q I+ GG+ + S+ G + + Sbjct: 550 IEPDKLNLIFLPFEQTGKA-KFKTQGTGLGLAISQEIVRMMGGKISVTSQPGIGSKFEFM 608 Query: 472 L 472 + Sbjct: 609 I 609 >gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum] Length = 848 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 6/269 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + I + A S R+ AEE ++ FLA MSHELRTPLN ILG S Sbjct: 444 EQRIESIITQGQDITTIAEAAKQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVS 503 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++++ E ++ E + + SG+HLL ++N+ILD S+IE G++ + ES L+++ Sbjct: 504 QLLKREI----SDHEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEV 559 Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + EK IE K + P + +D+ + Q++ NLL+NA KFT G + Sbjct: 560 ISAVESIYRPLCAEKEIEFSLKSNIPPDMMIHSDQVRLNQILFNLLNNATKFTHH-GLIS 618 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + +ISI D G GI E ++ + F Q G GLGL I +S++ Sbjct: 619 IEFQQKNNHQLFISISDTGIGIREQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIE 678 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG ++S+ G LP V + Sbjct: 679 MLGGAVNVKSQFGVGTTFSVELPLVVVSD 707 >gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 803 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 78/295 (26%), Positives = 139/295 (47%), Gaps = 16/295 (5%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + + + ++ A L + + +AE+ KS FLA+MSHE+ Sbjct: 337 IHAEESLKRYAEDLKRLKEIEEQNSAHLARVVEELGKAKTQAEDAARTKSEFLANMSHEI 396 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+ AILG++E++ + P + + I R+ LL +IN+ILDLS+IEA + Sbjct: 397 RTPMTAILGYTELLLEQ---PDIAPHAADSLQTIRRNADFLLEIINDILDLSKIEADKLT 453 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + S I I + ++++RA++K +++ + ++ V D +RQ++LNLL NA Sbjct: 454 IESVRCSPILIANDACALMRIRARDKGLKLVVQTASNVPEFVETDPTRLRQILLNLLGNA 513 Query: 380 VKFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 VKFT + G V + V + + G S+ D G G+ + +I + F Q Sbjct: 514 VKFTHV-GNVQLRVEYVNPQGTQTGNPDALGGLRFSVCDTGIGMTKEQIGRLFQPFTQAD 572 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + G GLGL I++ + G + S++ G + + P+ Sbjct: 573 TSTTRKYGGTGLGLTISRRLARMMHGDIEVTSQVGVGSVFSLHIDAIKPQFSTPQ 627 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 21/260 (8%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ILG S+++E + NE + + + R+GQ LL LIN++ Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLLERTGL----NERQQNLLEVLQRNGQTLLTLINDV 1170 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LDLS++EA + L +++ A+EK + I ++D +L + V D Sbjct: 1171 LDLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFR 1230 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423 ++Q++ NLL NAVKFTA G + + S+ D G GI + Sbjct: 1231 LQQILHNLLGNAVKFTAK-GSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEP 1289 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR------- 476 F Q + G GLGL I + I+ G+ + S+ +G ++P + Sbjct: 1290 FIQADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEKAGDSEDV 1349 Query: 477 ----VLNFIPEDNHESTQYK 492 L ED +S+Q + Sbjct: 1350 LEAQALQPPAEDAIDSSQAR 1369 >gi|83746249|ref|ZP_00943302.1| composite two-component regulatory protein (sensor kinase and response regulator hybrid) [Ralstonia solanacearum UW551] gi|83726999|gb|EAP74124.1| composite two-component regulatory protein (sensor kinase and response regulator hybrid) [Ralstonia solanacearum UW551] Length = 638 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69 + + P + LGL + ++ D L I VL V + ++ Sbjct: 29 LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 88 Query: 70 PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + G+ W Sbjct: 89 LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++A Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L ++F ++ + V+ + + E L A+ DE ++RA Sbjct: 207 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +ET + + Q + L Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 315 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 492 Query: 485 NHESTQYK 492 ++ K Sbjct: 493 AQPRSEQK 500 >gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1364 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 145/275 (52%), Gaps = 3/275 (1%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + +++ E EL + D+ ++ EE KS FL++MSHE Sbjct: 540 LAIKNAELTQQSEELVQQSTELVQQSDELARRNRVLDQQKQLLEEATRLKSEFLSNMSHE 599 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S V+ ++ L+ E + Y+G I ++G+HLL+LIN+ILDL++IE+GR Sbjct: 600 LRTPLNSVLALSRVLAVQGAARLSVEE-RGYLGIIEKNGKHLLSLINDILDLAKIESGRQ 658 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +L A++ + E + L + A EK I + +L S+ D K +RQ++ NL+ NA Sbjct: 659 DLFFEAVAPDKVAAEVVDGLAVLASEKGITLALSAPQALPSMVIDVKKLRQMLQNLVGNA 718 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFTA G V + + G ++D G GIA + ++ F Q + + +G G Sbjct: 719 VKFTAE-GAVTLRLAQL-GNELLFEVEDTGIGIAPQYLDSIFQEFRQADGSTSRSYEGTG 776 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 LGL I + GG+ + S+L +G LP Sbjct: 777 LGLAIVKKSARLLGGEVAVVSELGKGSVFSLRLPL 811 >gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 720 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 142/265 (53%), Gaps = 8/265 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++A++ ++R+ A+ N K FLA +SHELR+PLN ILG+S ++ + + Sbjct: 330 ITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKL---SE 386 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + IHR+ Q LI ++LD+SRI G+ L+ S + L + + +QL AQ Sbjct: 387 AKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLAAQ 446 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K+I + ++P++ V D ++QVI NLLSNAVKFT GG+V++ + G I+ Sbjct: 447 AKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQL-GNVVQIT 505 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 + D G GIA + + F Q +I G+GLGL IA+ ++ H G +S + Sbjct: 506 VSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGVD 565 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 +G I LP ++ P +S Sbjct: 566 QGATFIIRLPL---MSPQPTTTQDS 587 >gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1440 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 16/341 (4%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALS-TQAIMSMHVLDISLAGMLATALSFFTYITYH 206 L + ++ ++ +F V+ L+ +H+ I Sbjct: 851 GLGTARPASIVILPILFEDLVLGVIELASLSKFSDVHLAFIDQFVNTIGVSINTIIANSR 910 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + +E + EL+ + + +E + KS FLA+MSHELRTPLN+ Sbjct: 911 TESLLSESQRLTSELRERSDELQSSNAELEEKAALLATASQYKSEFLANMSHELRTPLNS 970 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +L + ++ G L ++ + + IHRSG LL LI++ILDLS+IEAGR ++ + Sbjct: 971 LLILARLLADNPDGHLTDQEVQ-FATTIHRSGSDLLQLISDILDLSKIEAGRMDVRPKTL 1029 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 LI ++ + ++ + ++ + +++DE+ ++QV+ NLLSNAVKFT Sbjct: 1030 PLIKLLDYVHATFRPLTIDRGLGFEIAVEKDVPAELYSDEQRLQQVLRNLLSNAVKFTHD 1089 Query: 386 GGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 G V + V + S++D G GIA ++P + +F Q Sbjct: 1090 -GSVELRVNRVAGMQFAEETLRNADHVIAFSVRDTGIGIAPEKLPMIFEAFQQSEGTTNR 1148 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ + S+ G +P Sbjct: 1149 KYGGTGLGLSISREIAGMLGGKIVAESEPGVGSRFTLYIPA 1189 >gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1420 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 10/272 (3%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L + + ++ A + E +K AE+ N+ KS FLA+MSHE+RTP Sbjct: 674 SNMLVQKDDGSMNYIATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTP 733 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 ++ + G +I + PL ++Y+ +S LL++IN+ILD S+IEAG+ ++ E Sbjct: 734 ISGVTGLISLILDMPLEPL----QRDYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIE 789 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 SL +I + + +K +E +D ++ S + D + Q++ NL+ NA+KF Sbjct: 790 QDFSLEEIFKNISNLFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKF 849 Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G V + I+D G GI++ + +F Q + K G Sbjct: 850 T-ENGYVALKSEIKEINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGS 908 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GLGL I + ++ G+ + S+ +G + Sbjct: 909 GLGLSITKQLIELMHGKIWLESEEGKGSKFYF 940 >gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1266 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 136/253 (53%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + + + ++ AE N AKS FLA+MSHE+RTP+NA++G +++ + P+ Sbjct: 505 ISERKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLDPV-- 562 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y +H + + LL +IN+ILD S+IEA R L L +++ + + +A Sbjct: 563 --QRNYAEKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGDQAG 620 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 EK +E+F +++P++ S + D + QV+ NLLSNA+KFT G+V +++ Sbjct: 621 EKGLELFLRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFT-KHGQVGLSITQLGQDPEGV 679 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + +F Q + G GLGL I+Q ++A+ GG+ + Sbjct: 680 RLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGELRLE 739 Query: 460 SKLREGVEVIAIL 472 S EG L Sbjct: 740 STPGEGTRFAFEL 752 >gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 1037 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 10/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 652 ITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK- 710 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ I + LL LI++ILDLS+IEAG E ++ L ++RE +L L+ Sbjct: 711 ---QEYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLS 767 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EKN+ + + + ++ + Q+++NL++NA+KFT G + + Y Sbjct: 768 PEKNVTLSFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQE-GSIRFGYKLQDDKMLYF 826 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI E + ++ F + + QG GLGL I Q ++ + GG + SK Sbjct: 827 YVSDTGCGIPEDKQESIFGRFVKL----NNFAQGTGLGLSICQMLVQHMGGNIGLTSKPG 882 Query: 464 EGVEVIAILP 473 EG LP Sbjct: 883 EGSTFWFTLP 892 >gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 2040 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 157/309 (50%), Gaps = 24/309 (7%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + L EK ++ + AE N AKS FLA Sbjct: 1527 HLEVLHLLAAQAAISIDNAQLYASVEK-----KVAQRTQQLRTAQLEAEHANQAKSDFLA 1581 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SMSHELRTPLNAILGFS+++ + P + E + I+RSG+HLL+LIN++L LS+I Sbjct: 1582 SMSHELRTPLNAILGFSQLMAQDARLPQH---LGESLAIINRSGEHLLDLINDVLALSKI 1638 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373 EAG+ L + + ++ MLQLRA+ KN++ + P + V ADE+ +RQ+++ Sbjct: 1639 EAGKTTLQLDTFNFYEFLQAIHGMLQLRAKSKNLDFHFEQSPDIPEVIQADERKLRQILI 1698 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGEIPTVLTS 423 NLL NA+KFT GRV + V + ++D G GIA+ E+ +V + Sbjct: 1699 NLLGNAIKFTEQ-GRVTLRVTNAHSQSEGLTPPDISVLQFEVEDTGAGIAKDELDSVFEA 1757 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F Q IKS QG GLGLPI+QS + GGQ +RS+ G LP VL Sbjct: 1758 FVQTQSGIKSR-QGTGLGLPISQSFVQLMGGQLQVRSEEGIGTCFFFNLP---VLVTTTP 1813 Query: 484 DNHESTQYK 492 H+ +Q K Sbjct: 1814 VTHKPSQQK 1822 >gi|153832488|ref|ZP_01985155.1| sensor histidine kinase [Vibrio harveyi HY01] gi|148871283|gb|EDL70155.1| sensor histidine kinase [Vibrio harveyi HY01] Length = 806 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELE 229 ++ L +L YI + + K + E LI + Sbjct: 274 RGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDITYDSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTVYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E+ + + I+ + EK ++ Sbjct: 390 HLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSTNSVYHTLCAEKGLQ 449 Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405 + P D+ +RQV+ NLL+NAVKFT G V V + Q IS+ Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GYVEVELTEYVEGQQTRLRISV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI+ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISPDAQERIFRPFEQAESSTTRRYGGTGLGLAIVKQISEHMGGSITVQSQECIG 568 Query: 466 VEVIAIL 472 + + L Sbjct: 569 TKFVVEL 575 >gi|90413299|ref|ZP_01221293.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK] gi|90325700|gb|EAS42163.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK] Length = 984 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 174/370 (47%), Gaps = 24/370 (6%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIA---LSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 TL T I +A +LI + S + F LS + + Sbjct: 331 TLTVARTTLISISVIGLAALVLIMWRFVYASVICRFNDYSQALLSLARGDLGIQLDIKGD 390 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI-----AELEVAKSLSD 236 + + A M+A + Y + + L E + + +ELE S + Sbjct: 391 DELAHMGRAIMVARDTASERYRLIQVERKIRHELQLHKESLERLVAQRTSELEKTNSRLN 450 Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E R AE+ N AKS FLA+MSHE+RTP+N +LG + ++ + N+ Sbjct: 451 EEVVNHDKARNEAEKANRAKSAFLATMSHEIRTPMNGVLGTASLLADTGL----NDQQAR 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I+RSG+ LL+++N+ILD S+IEAG ++ SL ++V + ML+ RA K+I+ Sbjct: 507 YLRVINRSGETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQ 566 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIK 406 + ID ++++VW D +RQ+++NL+ NA+KFT G+V + V + Sbjct: 567 LVNHIDDTMNNVWLGDVTRIRQILINLVGNAIKFT-DHGQVTIAVSMNPDMPDELLFEVT 625 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI E E + +F Q K+ G GLGL I++ I+A G+ + S + G Sbjct: 626 DSGIGIEEAEQDILFNAFKQAEEGRKT-IGGTGLGLAISRHIVAAMDGEIGVDSIINVGS 684 Query: 467 EVIAILPNTR 476 +P R Sbjct: 685 CFWFSIPLER 694 >gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2] gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2] Length = 925 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 17/344 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + +L+A IS L ++ A+ + M Sbjct: 173 LLVSGFIILLAFFISILMALRFSKLFLTPMSKLLFAI--DKLKEGDQDTSINEPMRGEFE 230 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-------AELEVAKSLSDETRKRAEEENLAKS 250 + ++ Q D I + E + +K A++ N KS Sbjct: 231 LLRQGLNSIAHNMMLQKDEMQKHIDQAISDYRETLEQYETQNIQLNIAKKEAQDANRVKS 290 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHELRTPLN ++GF+ + + K+Y+ I S LL +IN+ILD Sbjct: 291 DFLAKMSHELRTPLNGVVGFTRQLYKTPLNKH----QKDYLDTIELSANSLLAIINDILD 346 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S++EAG EL L D V E + +L A +KN+E+ I ++ S+ D + Sbjct: 347 FSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSLIGDPTRFK 406 Query: 370 QVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQ 426 Q+++NL+SNA+KFT G + V + + +++I D+G GI+ + + ++FGQ Sbjct: 407 QILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSGIGISANKQDALFSAFGQ 466 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 +I G GLGL I + ++ GG + S + +G Sbjct: 467 ADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFTF 510 >gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 632 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + E E++ I + Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LI++ILDL++IE+G + + +S+ +++ E + +++ + N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++D + QVI N L+NA+K+T+ G + + G S+ D G G+++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSE-GCITLAYEII-GDEIKFSVTDTGDGMSQEIQA 563 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F +G + +QG GLGL I ++I+ GG+ + S+L +G P Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 6/314 (1%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK- 221 + L + +A ++ + A I ++ K L AE Sbjct: 366 IRLCILALAIASGLGLLIVNWITKSIKKLSTAAYAISHGEINQNVSIQGFKELVILAESF 425 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + EL + + + + + + K FLA+ SHELRTPLN I+G +E + G Sbjct: 426 NKMTKELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGN 485 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ E + + I SG L NL+N+ILD S++ +L S++ + ++ + ++ Sbjct: 486 IS-ELQNKNLSMIVVSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRI 544 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---G 398 +EK++++ I L V ADE ++Q++ NL+ NA+KFT + G + ++ Sbjct: 545 ILKEKDVQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTEV-GVITISAELIDLKNN 603 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++ D G GI E + + SF QG + + G GLGLPI + ++ HGG + Sbjct: 604 PKMAITVSDTGIGIPEDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISV 663 Query: 459 RSKLREGVEVIAIL 472 +S G E L Sbjct: 664 KSNPGVGSEFTFTL 677 >gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 632 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 11/235 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + E E++ I + Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LI++ILDL++IE+G + + +S+ +++ E + +++ + N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++D + QVI N L+NA+K+T+ G + G S+ D G G+++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F +G + +QG GLGL I ++I+ GG+ + S+L +G P Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614 >gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 869 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 741 PGVELVLRMPESDKIYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 854 VGKGTRFTVRLP 865 >gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293] gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293] Length = 896 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 31/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + A+L+V K +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE+++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E + ++ + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA+ + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP----------------N 474 G GLGL I + GG ++S + EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLQSHVGEGSIFTVYIPNLPNGLHDVQLSNLEVA 748 Query: 475 TRVLNFIPEDNHEST 489 V IP + E T Sbjct: 749 ATVDEVIPAEVVEET 763 >gi|150025527|ref|YP_001296353.1| two-component system sensor histidine kinase [Flavobacterium psychrophilum JIP02/86] gi|149772068|emb|CAL43544.1| Probable two-component system sensor histidine kinase [Flavobacterium psychrophilum JIP02/86] Length = 729 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 10/279 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 ++ L + + ++R E+ + A++ FL+++SHELRTPLNAI G S ++ + Sbjct: 331 RNKSNELLRDKNNELEIAKERIEKASKARAEFLSTVSHELRTPLNAINGISHILLDD--- 387 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 EY+ + SG HLL INEIL+++RIE+ E+ + +L +++ L+ Sbjct: 388 -NPKPRQIEYLKSLKFSGNHLLTYINEILEINRIESDNIEIENISFNLKELLNNIQNSLK 446 Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +A++ N ID + D + Q+ +NL+SNA+KFT G + V + Sbjct: 447 EQARQNNNHFILTIDNDAPEILIGDPTKLSQIFINLISNALKFT-ENGNIIVNARVVNRD 505 Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +KDNG GI + ++ SF QGS+ I G GLGL I + ++A G+ Sbjct: 506 DTSCLVKFEVKDNGIGIPTDKQESIFESFSQGSVEINRKYGGTGLGLTIVKRLLALMNGK 565 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 + S++ G L T IP + K + Sbjct: 566 IEVHSQIGIGSTFTFNLSFTIGQEIIPSTLNNLIDEKIF 604 >gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] Length = 2232 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 145/315 (46%), Gaps = 19/315 (6%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + +V+ + L + + + K + ++ + + + A+ ++ Sbjct: 1751 SSFTQRNVVVLELLCSQIGISLANAMLFHEVNKISASNVTMIEVQKRALVQARQAEEMAR 1810 Query: 237 ETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A EE AKS FLA++SH+LRTP+N I+G SE++ + ++ E Sbjct: 1811 IAEAEAIHNIKLKEEAANAKSTFLANISHDLRTPMNGIIGLSELLRETNL----SKDQGE 1866 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I LL LIN+ILD S++E G+ +LS +++L D + E + L ++ +E Sbjct: 1867 YMESIRICADTLLALINDILDFSKLEVGKMKLSIVSMNLKDTISEVVQALFHANRDNKLE 1926 Query: 350 IFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---- 403 + +D V D + Q+I+NLLSN+ KFT G V ++ T + I Sbjct: 1927 TVENLDQIPPDLVVLGDPVRLHQIIMNLLSNSYKFTP-NGSVSISGKVTRAGKRRIRLEC 1985 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKL 462 S+ D G GI++ + + F Q + + G GLGL I ++I+ GG + S L Sbjct: 1986 SVSDTGIGISDEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLESTL 2045 Query: 463 REGVEVIAILPNTRV 477 G V +P + Sbjct: 2046 GVGTTVTFHIPFHKA 2060 >gi|171696068|ref|XP_001912958.1| hypothetical protein [Podospora anserina S mat+] gi|170948276|emb|CAP60440.1| unnamed protein product [Podospora anserina S mat+] Length = 1321 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 672 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 731 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 732 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 787 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ +++ S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 788 LKTLAVKANEKFLDLTYRVNNSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 846 Query: 395 WTS-------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 S + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 847 KASHVQCAPYEYAIEFIVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 906 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 907 LVNLMGGDVWVKSEYGKGSKFYFT 930 >gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium] Length = 823 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 142/256 (55%), Gaps = 15/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E + + ++ K AEE N AK++FLA MSHE+ +PLNAI+GFSE++ + N Sbjct: 560 VSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKTPL----N 615 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +T KEY+ I + Q LL++IN+ILD S+I+A + E +L ++ +++++ +A+ Sbjct: 616 DTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLLVVKGKAK 675 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRG 400 E N+ + KID ++ V+ D ++QVILNLLSNA+KFT G + ++V Sbjct: 676 E-NVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQ-GSIEISVNTEKHFLEDE 733 Query: 401 QYI-----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 Q S+KD G GI + + F Q ++ G GLGL IA++++ GG+ Sbjct: 734 QVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARALVERMGGK 793 Query: 456 FLIRSKLREGVEVIAI 471 + S +G Sbjct: 794 IWVTSSPGKGSTFAFT 809 >gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1572 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + A++ N AK FLA+MSHE+ TP+NAI+G + + + Sbjct: 817 INESKALQRELASAIEIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTELTK--- 873 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 YI HRS Q LL +IN+ILD S+IEAG+ ++ L D++ + I + ++ Sbjct: 874 -QQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIKVA 932 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY 402 EK +E+ IDP++ ++ D + Q++ NL +NAVKFT G + V++ + Sbjct: 933 EKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLTDDEVT 992 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G G+ + + +F Q + G GLGL I +++ GG+ + S Sbjct: 993 LKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMGGEIGVSS 1052 Query: 461 KLREGVEVIA--ILPNTRVLNFIP 482 ++ +G + P + P Sbjct: 1053 EVNKGSIFYFESVFPIVEHHDLAP 1076 >gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum] Length = 2150 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 145/271 (53%), Gaps = 18/271 (6%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L D+ + ++ + + + ++ AEE N AKS F+A++SHE+RTPL+ ++G S++ Sbjct: 1354 SLRMAGTLRDMTSRKDMQRLILE--KEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDL 1411 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + +E ++Y+ I +S Q LL +IN+ILD S++E+ + ++ S+I+ + Sbjct: 1412 LLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQ 1467 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH-V 391 I ML + A +++I ++ P++ + D MRQV+LN LSNA+KFT+ G + + Sbjct: 1468 AVIHMLSV-AANDDVDILLRVPPNVPRIIFGDAMRMRQVLLNRLSNAIKFTSRGHVLTDI 1526 Query: 392 TV------GWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +V T + I+I+D G GI + ++ F Q + G GLGL Sbjct: 1527 SVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLS 1586 Query: 444 IAQSIM-ANHGGQFLIRSKLREGVEVIAILP 473 I + ++ GG + S + +G + I+P Sbjct: 1587 ITKRLIEEVMGGTIQVSSIVGQGSKFKCIIP 1617 >gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 843 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 9/256 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E ++ +E + A N AK+ FL+SMSH++RTP+NAI+G + + + P E Sbjct: 307 ELQERQRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQANLESP---E 363 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I S +HLL+LINE+LD+S+IE+G+ L+ + ++L D+++E + M + E Sbjct: 364 KIRDCLEKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNE 423 Query: 346 KNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400 K+ I +V AD +RQV++NLLSNA+K+T GG + + + T + Sbjct: 424 KHQLFRISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKR 483 Query: 401 QY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 QY DNG GI++ +P + +F + + S QG GLG+ I ++I+ G ++ Sbjct: 484 QYEFICTDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVK 543 Query: 460 SKLREGVEVIAILPNT 475 S+ G V +P Sbjct: 544 SEEGAGSTVTVSVPLE 559 >gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 642 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 12/272 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 IA+ + ++ + + R+ AE+ N AKS FLA+MSHE+RTP+N I+G + L+++ P Sbjct: 249 RDIAKRKALENEARQAREEAEQANRAKSEFLANMSHEIRTPMNGIMGMIHLARLKSVDP- 307 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EY+ +S HLL ++N++LDLS++EAG+ L SL V + ++ Sbjct: 308 ---AISEYLDLADKSALHLLGIVNDVLDLSKLEAGKIRLFRKRFSLRKEVEAVVEPFRVA 364 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A +K++ + + P L S+ D +RQV+ NL+ NA+KFT GR+ + V Sbjct: 365 AGKKDLGLAHTVAPDLPDSIVGDAGRLRQVLTNLVGNALKFTPS-GRIDLRVERAGESAA 423 Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++ D G GI + SF Q + ++ G GLGL I++ ++ GG+ Sbjct: 424 GGPQLFRFTVTDTGIGIPAVRFAHIFESFEQAHTSAQALFGGTGLGLTISRQLVELMGGE 483 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + S EG LP + ED + Sbjct: 484 ITVASTEGEGSVFSFTLPLDVAHAVVEEDEAK 515 >gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Kim 5] Length = 590 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 131/261 (50%), Gaps = 8/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL+ + E RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 169 VTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 225 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K +I I +SG LL +IN+ILD S+I+AG+ L ++A + + V + +L A Sbjct: 226 -RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAA 284 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EKNIE+ + P L + V D RQ++ NL+ NAVKFT G V V G Sbjct: 285 EKNIELLGRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIM 344 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I I+D G GI ++ +V F Q + +G GLGL I ++ GG + S Sbjct: 345 ANIRIEDTGIGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVES 404 Query: 461 KLREGVEVIAILPNTRVLNFI 481 + +G LP + Sbjct: 405 QWGKGSVFTVKLPFAVAAAHL 425 >gi|20807497|ref|NP_622668.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20516026|gb|AAM24272.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 462 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 12/310 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L F + A +S L + K K L E+D+L Sbjct: 160 LLFILMFFADGAGIFISFVTGYFVTKRALRPVDYMIKEVKDIDAKGLNKRLKVYGEEDEL 219 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + D R EE ++RF++ SHELRTP++ I G+ +++ + G + Sbjct: 220 TRLAKTFNDMLD----RLEESFARQNRFVSDASHELRTPISVIKGYIDML--DRWGKDDR 273 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +E I I + + +L+ ++L L++ + +L + L +I E + ++L + Sbjct: 274 EVLEEGIKAIKKETLEMESLVEKLLFLAKGDDRSIKLERESFDLKEIAEEVVREIKLIYE 333 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 KN+ + + AD+K +++V+ LL NA K+T+ G + + +G SG YI Sbjct: 334 GKNVSLK----GENVRINADKKLIKEVLRILLDNAAKYTSKNGNIEIEIG--SGDEAYIK 387 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD+G GI E ++P + F + A G GLGL IA+ I+ HGG ++S++ + Sbjct: 388 VKDDGIGIPEEDLPYIFERFYRVDKARSKDTGGTGLGLSIAKWIVEEHGGVIGVKSEVGK 447 Query: 465 GVEVIAILPN 474 G E +LP Sbjct: 448 GTEFTVMLPL 457 >gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 453 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 147/301 (48%), Gaps = 15/301 (4%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-----------EVAKSLSD 236 L+ L + FF Y+ +S + E +LI E + + Sbjct: 141 ILSLPLYLSEHFFGYLILQTEQSERSFNPEEIENLELITHQIAIAIKQVQWLERINKI-E 199 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 K+ + + KS + + +SHELRTPL ILGFS+++ E G L NE K+Y+ I Sbjct: 200 LENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTL-NEKQKQYVNGIRV 258 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG+HLL L+N+ LDLS+IEA + EL +++ DI I ++Q +A E+N+++ + Sbjct: 259 SGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLSE 318 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D++ ++Q+++NLLSNA+KFT G V + V + D G GI E + Sbjct: 319 QVDFCTVDQRKIKQILINLLSNAIKFTEK-GSVTLQVKKIES-LLTFCVIDTGIGIKEED 376 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + +G GLGL +++ + H G + S+ +G LP Sbjct: 377 QQKLFQPFQQIHSNLNRKHKGTGLGLALSRKLAQLHQGNLTLTSEYGKGSCFTLELPLEG 436 Query: 477 V 477 V Sbjct: 437 V 437 >gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] Length = 963 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 13/282 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE----TRKRAEEENLAKSRFLASM 256 L ++ E+ + E + + E RK AE+ N AKS FLA+M Sbjct: 418 ARAKRDLEDHQTRLEELITERTHQLQETNIRLNEEVENHARARKEAEQANRAKSAFLATM 477 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N +LG +++++ + + + Y+ I+RSG LL ++N++LD S+IEA Sbjct: 478 SHEIRTPMNGVLGTAQLLKDDGLDS----KQRHYVDVINRSGTTLLAILNDVLDYSKIEA 533 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNL 375 G ++ + ++++ ++ RAQEKN+++ I+ + W D + QV+ NL Sbjct: 534 GFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESDVEQYWHGDATRLAQVLNNL 593 Query: 376 LSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 + NAVKFT G V + V + D G GI E E T+ F Q S I S Sbjct: 594 VGNAVKFTDA-GHVDLYVALNPDYEGYILFEVTDTGCGIDEVEQSTLFEPFTQASNGISS 652 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ I+ GG+ S L G +P Sbjct: 653 K-GGTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFTIPME 693 >gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1053 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 142/267 (53%), Gaps = 12/267 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L A++ + + +++AE N KS F+A+MSHELR+PLNAILGFS+++ Sbjct: 571 NRTLEAQVNQRTAELAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAASGDL 630 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + +E + I+RSG++LLNLIN IL +++IEAG+ L+ L ++ E M Sbjct: 631 SAAD---QENVEIINRSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFD 687 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG 398 L A + +++ +I + V DE +RQV++NLLSNA+KFT +G V+V + Sbjct: 688 LEAATRGLKLNFEIPADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTP 747 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GIA+ E+ + +F Q S + G GLGL I++ + GG F + Sbjct: 748 TTLLFRVQDTGVGIAQSELDLLFKTFSQTQSGQNSQD-GTGLGLAISRQFVQLMGGDFSV 806 Query: 459 RSKLREGVEVIAIL------PNTRVLN 479 S++ G + P R+ Sbjct: 807 ESRVGVGTTFSFTIRVNIGEPTARLTP 833 >gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 770 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 169/352 (48%), Gaps = 15/352 (4%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA----- 190 + I + ML + V+V A H + A Sbjct: 179 ARVLPARTAAWIGAPLGRYLALMLTLVAVIGLILVIVHAGAAAGHPEHADTLRAALTSLF 238 Query: 191 ---GMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEEN 246 ++ +++ + + + + Q + IA +V + + ++ AE N Sbjct: 239 FILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQAKETAEAAN 298 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 LAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS QHL LI+ Sbjct: 299 LAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRSAQHLSGLID 355 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DE 365 +LD+SR+EAGR + + I L D + + + M++L+A+ + +L +V A DE Sbjct: 356 GLLDISRMEAGRLQTYRNEIRLADFLAQIVDMVRLQAEAAGLSFRFTRPDTLPAVVATDE 415 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 K +RQ++LNLLSNA+KFTA G V + + + + SI+D G GI E ++ + F Sbjct: 416 KRLRQILLNLLSNAIKFTAE-GEVALEMSYR-SQVAVFSIRDTGLGIPEADLARIFEPFE 473 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +GS+ A G GLGL IA + GG+ + S++ EG L V Sbjct: 474 RGSMPAARAAPGTGLGLTIAHLLAQVMGGEITVESRVGEGTCFRVRLMLAAV 525 >gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 1053 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 8/318 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L + L + + + T I + + Sbjct: 206 LTLLKMALPPELAAALTLPLRVEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A + + A+ +E + +AEE KS FLA+MSHE+RTP+NAI+G S + Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P ++Y+ IH S LL +IN+ILD S+IEAG+ + SL +++ Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A +K +E+ + + + D + QV++NL++NAVKFT G V V VG Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++ D G G+ E + + +F Q + G GLGL I++ ++ Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 453 GGQFLIRSKLREGVEVIA 470 G+ + SK G Sbjct: 502 EGEISVTSKPDAGSCFTF 519 >gi|1262210|gb|AAB03699.1| Nik-1 [Neurospora crassa] Length = 1281 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++ EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850 Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 T + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934 >gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 827 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 KS F+A++SHELRTPL AI+GF+E++ G + E +E++ I+ +G+ L N+ Sbjct: 595 AERIKSEFIAAVSHELRTPLAAIMGFAELLTS---GEIPLEEGQEFLRIIYDNGRRLKNM 651 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 ++ +LD SR+EAGR+E+ + + L + +R AQ +E ++I P L V AD Sbjct: 652 VDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIPP-LPPVEAD 710 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + QV+ NLLSNA KFT GGRV + G I ++D GPGI E E + + Sbjct: 711 PDRIGQVMGNLLSNAFKFTPKGGRVTLRA-MLEGDSLKIEVEDTGPGIPESERSRLFQRY 769 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G+ A+ G GLGL I+++I+ HGG+ + S++ +G LP Sbjct: 770 GRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLPL 819 >gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] Length = 891 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 27/351 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G + L Sbjct: 147 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEGQM---L 200 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 201 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 260 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 261 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 316 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + E II+L A EK +E+ ++ + V D Sbjct: 317 DVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQVIGDA 376 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVL 421 ++Q++ NLL NA+KFT G + + V + + I D G GI+E + + Sbjct: 377 MRLQQIVTNLLGNAIKFTEQ-GNIDILVATQAKTPQQVTLVVEIHDTGIGISESQQAQLF 435 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 436 QAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHL 486 >gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 1411 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 8/271 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +++ I +A+ D++ + + A E + AK+ FL+SMSH++RTP+NAI+ Sbjct: 990 ENHQTICLVRADVTDVLRADQQTREQLKNALTLAREASQAKTDFLSSMSHDIRTPMNAIV 1049 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +E+ P+ E + I + +HLL LIN+ILD+SRIE+G L + S Sbjct: 1050 GMTELALARRDNPV---QIDESLSVIRTASEHLLRLINDILDMSRIESGHIVLVKELFSQ 1106 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + V + + A +K D + Q++ NL+SNAVKFT GGR Sbjct: 1107 REEVEKIVTRALALAGKKGQTFSHSFQVRHDKCIGDVLRIHQILENLISNAVKFTPEGGR 1166 Query: 389 VHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V + D G GI+ +IP + F + +G GLGL Sbjct: 1167 VSLAVTELPQKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFRVENLRVGHTEGTGLGLS 1226 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I ++I+ GG + S+ +G LP Sbjct: 1227 IIKNIVDYKGGTIKVESEPGQGTRFTVDLPL 1257 >gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1001 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 I + L+ ++ L L A +L+ + D + + Sbjct: 229 IAQLLFALMLVTACGLLTLGLVVAGYLTRRINRQIDGLRDGALRMADDDFEQPVEIVSDD 288 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + ++ ++ + AEL+ A + + +AE + AKS+F+A+MSH Sbjct: 289 ELGRLAATFNSMQARLREHRSAIEASAAELQQATAAAQALALQAETASQAKSQFMATMSH 348 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+N +LG +E++ +G + + + ++RSG+ LL +IN+ILD S+IEAG+ Sbjct: 349 EIRTPMNGVLGMTELL----LGTALDSRQRRFAQAVYRSGESLLEIINDILDFSKIEAGK 404 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL+ + + +V + + +L RAQE+ +E+ + +P L + D +RQV+ NL++ Sbjct: 405 LELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGDALRLRQVLTNLVA 464 Query: 378 NAVKFTAIGGRVHVTVGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFG 425 NA+KFT G V V + + ++D G GI + + +F Sbjct: 465 NAIKFT-EHGEVVVEMRRVEPTAAETALATGDRLWVELCVRDTGIGIPPEALSRLFIAFS 523 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 Q S + G GLGL I++ ++ G +RS+ G LP + + Sbjct: 524 QASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLPLSPASS 577 >gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 773 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 19/299 (6%) Query: 207 LFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 LFK + + E L LE ++ AE N AKS+FLA+MSHE+RT Sbjct: 346 LFKDITTRRNAEEELKRLNETLEQRVLEQTGELRSAKEAAEAANRAKSQFLANMSHEIRT 405 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ILG +E+ T+ EY+ + +SG LL++IN+ILDLS+IE+G L Sbjct: 406 PMNGILGMTEL----TLLMDMPPQAGEYLRLVLQSGHALLDIINDILDLSKIESGHAVLD 461 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 L + + L + A+EK + ++ ID + + D+ +RQV++N++ NA+K Sbjct: 462 NKPFRLHECLGSTFNALAITAREKGLSLYHCIDSHVPEHIVGDQGRLRQVLINIVGNAIK 521 Query: 382 FTAIGGRVHVTVGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 FT GG V VTVG + D+G GI + + V +F Q ++ + Sbjct: 522 FTPKGG-VRVTVGRDGQPAPPGSARLLFQVADDGIGIPKDGLGEVFHAFSQIGLSSHTRF 580 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHESTQYKC 493 G GLGL I++S++A GG+ SKL +G V+ + PE E C Sbjct: 581 GGTGLGLSISKSLVAMMGGRIWAESKLGQGSLFSFT--AEFVVGDATPEPLPEPVPSAC 637 >gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 933 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 225 IAELEVAKSLSDETRKR--AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I ++ + + R+R + + AKS FLA+M HE+RTP+NA++G S + + Sbjct: 430 IEDVTAKREALELRRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSEL--- 486 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ I + + LLN+IN+ILD S+IEAG+ EL ++ +SL +++ M L+ Sbjct: 487 -VPKQRGYLEKICSASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMHHLK 545 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 AQEK ++ ++ P L + D + QV+ NL+ NA+KFT G V V V Sbjct: 546 AQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGNALKFTRR-GEVVVAVKPVEQGEG 604 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++D G GI ++ + T F Q + G GLGL I++ ++ GG+ Sbjct: 605 MVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGELQ 664 Query: 458 IRSKLREGVEVIAI 471 ++S +G Sbjct: 665 VQSVPEKGSSFSFT 678 >gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 481 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 102/441 (23%), Positives = 183/441 (41%), Gaps = 26/441 (5%) Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 IF W + + + I V+ + I + + T T Sbjct: 42 VLLVIFGGWVSSCFGFNFSETVIFD--LRFVPLIIAALVYPRSYTLIIIGVAIGLTRFTF 99 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA---------LSTQ 177 +L A + + S + V L Sbjct: 100 GLHMAA-WVGFLNMSILGVLCAGLNYWMRRSTCRLIIKASVTILAVNIVNTLNIACLGVI 158 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKS 233 + L + LSF + F+ + + ++L++E AK Sbjct: 159 PWRYYVAEVVPLTLPIGIVLSFLFALILRDFQMEQQRNHQIKQANELLSEQRDELQKAKV 218 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + +E K+ + KS F+A+MSHELRTPLN+I+ +++I E L+ + +Y Sbjct: 219 ILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKELDEDELDQYSDL 277 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ- 352 I+ SG LL LIN+ILDLS++EAG E+ +S+ +I + ++ ++ A++KN+E Sbjct: 278 IYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVTAKDKNLEFSLK 337 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISI 405 + +P + + +D K ++Q++ NLLSNA KFT GR+ + + G ++ Sbjct: 338 EHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHE-GRILLEISTQHLNQKGQEGDWVVFAV 396 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + + +F Q + +I G GLGL I++ GG + S+ +G Sbjct: 397 KDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEGKG 456 Query: 466 VEVIAILPNTRVLNFIPEDNH 486 LP ++ ++ Sbjct: 457 STFSLYLPMCPSVSKEADEQP 477 >gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 404 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 92/390 (23%), Positives = 171/390 (43%), Gaps = 13/390 (3%) Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 ++ + + Y ++ + + L I + + I Sbjct: 22 AVRRALKKAGVAAQFYEATDAEEALELVSETTFDCIFLDYRLPDYDGLDLIKQFKAMGIQ 81 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + L+ ++ A ++ + V +L+ L AL + Sbjct: 82 VPLIVLTGQGDEQIAVE----MMKAGASDYLSKSRVSSETLSQTLRNAL----RVYQAEQ 133 Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ L + + L + E + + ++ +E + KS+FLA+MSHELRTP+N Sbjct: 134 EAAQANLKLRETNELLKEQNQKLERQRRQIELQNEQLQETSRLKSQFLATMSHELRTPIN 193 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS+++ + PL + + I + ++LL L+N++L S+IEAG+ L + Sbjct: 194 AIMGFSQMLLRKYPEPLTCA-QTDLVQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTE 252 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + L+ A KN+ + K++ + D+ +R++++NLLSNA+KFT Sbjct: 253 LDLKQLTVLTTEELRSLAVSKNLSLQIKVELENPQIVNDQSCLRRILVNLLSNAIKFTES 312 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V V V I++KD G GIAE ++ + F Q + G GLGL I+ Sbjct: 313 GG-VWVNVWEMRPDWLAIAVKDTGIGIAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAIS 371 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +S+ G+ + S+L +G P Sbjct: 372 ESLTKMMQGKISVTSELGKGSIFQIEFPRK 401 >gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 453 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 5/234 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHELRTP+ +I GF+E + + + KE++ I++ Sbjct: 225 ELKKLEKMRKDFVANVSHELRTPITSIRGFAETLLDN---NITDPATKEFMEIIYKESHR 281 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI ++L LSR+E + L + +V E + L +A+ KN+ ++ L + Sbjct: 282 LQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQL-T 340 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + AD+ M+QV++NL+ N++ +T GG + + + + + +KD+G G+ E V Sbjct: 341 MRADKDRMKQVLINLIDNSIHYTPSGGDICLAISEETD-VIHFQVKDSGIGMDEKSQTRV 399 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + I+ H G+ + S L +G + +P Sbjct: 400 FERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIPK 453 >gi|331269704|ref|YP_004396196.1| putative phosphate regulon sensor protein [Clostridium botulinum BKT015925] gi|329126254|gb|AEB76199.1| putative phosphate regulon sensor protein [Clostridium botulinum BKT015925] Length = 455 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 146/305 (47%), Gaps = 10/305 (3%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + A + + LA ++ + +IT + + ++ D+L + Sbjct: 161 YLIVLMLAFVVALIFSSKLANIIVKPIKDLKFITSRIARGDLDRRVDIKSNDELGELSKT 220 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++D + + KS+F+A++SHEL+TPL +I GF+E + NN T + Sbjct: 221 FNDMAD----KLQNTLNIKSQFVANVSHELKTPLTSIKGFAETLR----YVENNSTRDRF 272 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 +G I + L LIN+IL LS IE +Y I ++ +++ +++ +++KNI + Sbjct: 273 LGIIDDEVERLTRLINDILILSDIECNKYLKKSEDIDVVACIKDIYNLMKNYSEKKNIHV 332 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + S + D+ +++I+N++ NA+K++ G +V + V T I ++D G Sbjct: 333 NMVVYES-PIICGDKDKFKEMIINIVDNAIKYSENGDQVFIGVK-TEENQCVIWVEDTGV 390 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + IP + F + A G GLGL I + I+ N G+ +RSK +G + Sbjct: 391 GIEKEHIPRLFERFYRVDKARSRNNGGTGLGLAIVKHIVLNFNGKIYVRSKFNQGTKFTI 450 Query: 471 ILPNT 475 +P Sbjct: 451 KIPLK 455 >gi|322701064|gb|EFY92815.1| histidine kinase 1 [Metarhizium acridum CQMa 102] Length = 1293 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 14/268 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 676 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 735 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 791 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 792 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 850 Query: 392 TVGWTSGRGQY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ + + + ++D G GIA+ ++ + +F Q ++ G GLGL Sbjct: 851 TIKERANQHEVGVGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 910 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG + S+ +G + Sbjct: 911 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 938 >gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519] gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii] Length = 602 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 3/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + F+A++SHEL+TP+ I +SE + + + E K ++ I + Sbjct: 367 QRLEDMRREFVANVSHELKTPITTIKSYSETLLCGAL--EDKELSKNFVEVIENEADRMS 424 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +L+ ++L LS ++ + + L +IV + + L++ Q KN ++ KI ++ Sbjct: 425 SLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEAVPIY 484 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD ++QVI+NLL+NA+K+T G + ++ + I+D+G GI + +I + Sbjct: 485 ADRGKIQQVIINLLTNAIKYTPENGNIRISAQVV-DKNAIFQIQDSGIGIPKEDIKRIFE 543 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A+ G GLGL IA +I+ H G + S+L +G P Sbjct: 544 RFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFPV 595 >gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 524 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + + +A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 278 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 336 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + N+ Sbjct: 337 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 394 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 +V++D K + QVI N L+NA+KFT+ G + + S +S+ D Sbjct: 395 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 452 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+E + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 453 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 508 Query: 469 IAILPNTRVLNFIPE 483 LP + P+ Sbjct: 509 WFTLPLKEIKENEPK 523 >gi|322706963|gb|EFY98542.1| histidine kinase 1 [Metarhizium anisopliae ARSEF 23] Length = 1293 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 14/268 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 676 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 735 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 791 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 792 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 850 Query: 392 TVGWTSGRGQY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ + + + ++D G GIA+ ++ + +F Q ++ G GLGL Sbjct: 851 TIKERANQHEVGMGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 910 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG + S+ +G + Sbjct: 911 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 938 >gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 524 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + + +A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 278 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 336 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + N+ Sbjct: 337 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 394 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 +V++D K + QVI N L+NA+KFT+ G + + S +S+ D Sbjct: 395 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 452 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+E + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 453 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 508 Query: 469 IAILPNTRVLNFIPE 483 LP + P+ Sbjct: 509 WFTLPLKEIKENEPK 523 >gi|295109066|emb|CBL23019.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 684 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 136/253 (53%), Gaps = 8/253 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ A+ N AK+RFL +MSH++RTP+NAI+GFSE++E + +Y+ Sbjct: 291 EKELEKAVLEAKNANEAKTRFLFNMSHDIRTPMNAIIGFSELLEKHI---DEKDKAIDYL 347 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I S LL+LIN +L+++RIE+G+ L + + +++ + + ++K I Sbjct: 348 GKIKSSSNFLLSLINYVLEMARIESGKLALKKEVGCVTELIESLTDVFEPGVKKKFITYS 407 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIK 406 + D V DE +R++ +N++ N+VK+T GG++ V+V + I ++ Sbjct: 408 CETDIQHKYVIGDETKVREIFINIIGNSVKYTPEGGKISVSVKEEPFEKENYIAYRIIVE 467 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 DNG G+++ +P + F + + +S G GLGLPI +S++ GG + S+L G Sbjct: 468 DNGIGMSKEYLPHIFEEFSREHTSTESKVTGTGLGLPIVKSLIDMMGGTIEVESQLGCGT 527 Query: 467 EVIAILPNTRVLN 479 + +LP Sbjct: 528 NMNVVLPFELASE 540 >gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603] gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603] Length = 968 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 26/332 (7%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + + +A A + + Q K+ L +E Sbjct: 381 LEVEVFTQGKDELAQMGQAIAHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTH 440 Query: 234 LSDE--------------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ ++ Sbjct: 441 QLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 T + Y+ I+RSG+ LL ++N++LD S+IEAG E+ ++ L +VRE ++ Sbjct: 501 TS----TQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q RA EK I + + + ++ W DE + QV+ NL+ N +KFT G V + + Sbjct: 557 QSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQ-GHVCIRISQDPD 615 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G +++D+G GIAE + ++ +F Q +QG GLGL I++ ++ GG+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQVSLFDAFTQAEAG--RRKQGTGLGLAISRKLVQAMGGELQ 673 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S+L +G LP P D T Sbjct: 674 LSSQLGQGSCFSFTLPLE---PGQPVDTPART 702 >gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 512 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + + +A+E N KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 266 ERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF- 324 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I ++ + LL LI +ILD S+IEAG +++++ +I E + L+ + N+ Sbjct: 325 -YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIPK-NV 382 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 +V++D K + QVI N L+NA+KFT+ G + + S +S+ D Sbjct: 383 RFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSE-GEIKL-AYKVSKDEIRVSVSDT 440 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+E + T+ F + + +QG GLGL I ++I+ GG+ + S L G Sbjct: 441 GMGISEEDCRTIFDRFVKLNAC----KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTF 496 Query: 469 IAILPNTRVLNFIPE 483 LP + P+ Sbjct: 497 WFTLPLKEIKENEPK 511 >gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 891 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 8/301 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +S + F ++ + D AE + L + A+ N AKS FL+ Sbjct: 327 HWISLQIIYVENPFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASAKAANRAKSDFLS 386 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSH++RTP+NAI+G S + + ++ + ++ I S ++LL+LIN+ILD+S+I Sbjct: 387 RMSHDIRTPMNAIIGMSTI---GQLKLGDDRSVQDCFRKIDASSRYLLSLINDILDMSKI 443 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVIL 373 E G+ ELS+ +++ E ++ +AQEK I + L + D ++Q++L Sbjct: 444 ETGKMELSQEYFDFAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYYVGDSLRVKQILL 503 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NLLSNA+KFT+ G + + + ++D+G G+++ + F Q S Sbjct: 504 NLLSNALKFTSADGLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFRSRIFQPFEQESP 563 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I +++ GG + S+ +G +P V + ++ Sbjct: 564 EAARNNVGSGLGLSIVYNLVQLMGGTIEVESEKNKGAAFTVTIPLKLVEDDEQKERQRKQ 623 Query: 490 Q 490 Q Sbjct: 624 Q 624 >gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 2783 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 2/244 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K +F++ +SHELRTPL AI G+ +V+ L L + Y+ I + L Sbjct: 2541 EADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQL-SYLNIIKNNTNRLRA 2599 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI +IL+ SR ++ + +L+ + + + ++ E + L+L + K +++ PSL V A Sbjct: 2600 LIEDILEFSRPDSKK-KLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSLPPVIA 2658 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+K + Q+I NL SNAVK+T GG + V I ++D G G++ ++ + Sbjct: 2659 DQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLKKLFRP 2718 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + ++ G GLGL IA+ ++ HGG+ + S+L +G +P + + + Sbjct: 2719 FYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQTKSTDND 2778 Query: 484 DNHE 487 + E Sbjct: 2779 EEVE 2782 >gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] Length = 858 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194 ++ A I + A + A + + V + +A A Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248 T I +F+ N+ + + +I + + A+ S+ R+ AE+ A Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ FLA MSHE+RTP+N ILG +++++ E K I + SG+HLL ++N+I Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367 LD S+IE G++ + + S D +R + + + K +E+ + ++ D+ Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVR 597 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422 + Q++ NL+SNAVKFT G V + + I D G GI ++ + Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479 F Q G GLGL I ++++ G +RS+ +G + LP RVL Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716 Query: 480 FI 481 + Sbjct: 717 PL 718 >gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1516 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 104/427 (24%), Positives = 179/427 (41%), Gaps = 28/427 (6%) Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 + +G+ R + V + G L + L I +L + Sbjct: 789 AVRFRVGQSLVGQAARSRRAIAVDDVPPGYATISSGLGSTTPASLIVLPIVVEDQVLGVI 848 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYH 206 ++++ F L + FL + ++ +I++ D L + A + + Sbjct: 849 ELASVHGFTLVHRAFLELLMEQIGVNVNSIVANARTDELLGESQRLTAELQARSEELQAR 908 Query: 207 LFKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASM 256 + + + L+ + E ++ R+ E + KS FLA+M Sbjct: 909 QEELQSSNAELEEKAALLVTQNRDIETKNLEIEQARQELEARAQQLTLASKYKSEFLANM 968 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EA Sbjct: 969 SHELRTPLNSLLILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEA 1027 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ +++ +SL ++ + ++N++ + P + D+ +RQV+ NL Sbjct: 1028 GKMDVTPEQVSLRQLIDYVEATFRPMTSQRNLDFRITVAPGSPIELLTDDSRLRQVLRNL 1087 Query: 376 LSNAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 LSNAVKFT +GG + + + G + D G GIAE ++ ++ +F Sbjct: 1088 LSNAVKFTEVGG-IELHIEPVDPERLPRPLRVHGPAVAFRVTDTGIGIAEHQLESIFGAF 1146 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPE 483 Q G GLGL I++ I GG +S L EG + LP R +P Sbjct: 1147 QQADGTTSRKYGGTGLGLSISREIAQLLGGVITAQSTLGEGSTFVFALPVARPDFAPLPA 1206 Query: 484 DNHESTQ 490 H T+ Sbjct: 1207 GEHPGTE 1213 >gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 810 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPQDGIIEMLCINYDITPLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + +EYI + + + LL LI++ILDLS+IEAG + + Sbjct: 608 AIVGFSSLLAET----DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTN 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + E I + ++ K +E+ + ++ D+ QVI N ++NA+KFT Sbjct: 664 VDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI E + +V F + + QG GLGL I Sbjct: 723 -GSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKL----NTFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI++ GG+ + S G P Sbjct: 778 KSIVSQMGGEIGVDSTEGIGSCFWFTHP 805 >gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 868 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 11/272 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E ++ ++ R AE+ K FL+++SHE+RTPLNAI+GF+ ++ MG + Sbjct: 343 RDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTPLNAIIGFTNLL----MGEV 398 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ +EY+G I +G++LL LIN+ILD S+IEAG+ L ++ +S+ ++ E ++ R Sbjct: 399 TDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKAPVSIRELADEISAIMHHR 458 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A EK I + L + D+ + Q++LN+ NAVKFT G V + V Sbjct: 459 AVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFTEK-GSVKLRVAPIGEPLN 517 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + +KD G GI + ++ V F Q + + G GLGL I +S++ G Sbjct: 518 DVQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGTGLGLSIVKSLVQLFEGTL 577 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + S+L +G P V + D+ E Sbjct: 578 NLESELGQGTVFTMDFPFRIVNDAGLHDDIEK 609 >gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] Length = 983 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 141/252 (55%), Gaps = 9/252 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E AE N AKS FL++MSH++RTP+NAI+GF+ + N E ++ Sbjct: 452 KMNQALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNQERVQD 508 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL D++ + ++ + K +E Sbjct: 509 YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHAKQLE 568 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403 ++ +D + V+ D+ + QV+LNLLSNAVKFT GG V V + + I Sbjct: 569 LYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYPKAVKGSKLYEI 628 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G G+++ + + + F + + S QG GLG+ I ++I+ GG ++++ Sbjct: 629 RVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQG 688 Query: 464 EGVEVIAILPNT 475 +G E I LP Sbjct: 689 KGTEFIVCLPLR 700 >gi|119468142|ref|ZP_01611268.1| sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] gi|119448135|gb|EAW29399.1| sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] Length = 954 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 8/324 (2%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 F+ + L ++ + + + ++ L+ + + E Sbjct: 304 VAFVIKPLSQLTLLLNSMNEGKPITLKNKHAKLSEIASVLKAANTLYLKSEETKQLLDET 363 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L ++E + + + + N K F+A+MSHELRTP+N ILG ++++ M Sbjct: 364 RALNVKMEAMNTELTQAIEETNKANKTKIDFVANMSHELRTPMNGILGMLQLLQTSNMPV 423 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++Y S Q LL ++N ILD S++++ +L + +L IV + + Sbjct: 424 ----KQEQYAKKAFSSAQSLLQVLNNILDFSKLDSDNLKLEKIPFTLDTIVSNVEDLFSI 479 Query: 342 RAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTS 397 AQ+K + + ++ D + Q+I N + NA+KFT G + V + Sbjct: 480 NAQQKGLALNCVVHADRHLTLLGDPIQLNQIINNCIGNAIKFTDKGEVSLTIEVIFQKEN 539 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 SI D G G+ + + V SF QG + G GLGL I++ + GG Sbjct: 540 KVQLRFSISDTGIGMTQAQSDRVFESFAQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQ 599 Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481 ++S+L +G E + LP T + Sbjct: 600 VKSELGKGSEFLFTLPFTIAEQQL 623 >gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 798 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 10/268 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + LIA+ + ++ AE N AK+ FLA+MSHE+RTPLN I+G S V+ + Sbjct: 262 EMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKL 321 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P+ +Y+ I S Q LL LIN+ILDLS+IEAG + + ++ +++ + + + Sbjct: 322 TPI----QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSID 377 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTV----G 394 +A EKN+++ I P + + DE ++QV++NL SNA+KFT G + ++V Sbjct: 378 IAKATEKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAMKFTHK-GFISISVSFSNR 436 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + I++KD+G GI +L F QG +I G GLGL I ++ GG Sbjct: 437 VENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGG 496 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482 I S+ +G + V +P Sbjct: 497 ALDIESEQEKGSRFSFRIKTNIVNKKLP 524 >gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 762 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 29/315 (9%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + +A M+ ++ F I Y L K N ++LS E A+ Sbjct: 304 VAGLSWVLMQNAVLMATMIIAVIAIFFSIYYQLVKRNTRLLS---------DEKNRAERA 354 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 S+E R+ +LAKS FL+ MSHE+RTP+N I+G + + + E + + I Sbjct: 355 SEEARR----ASLAKSEFLSRMSHEIRTPMNGIMGMTAIALEN---AHDEEKARACLEKI 407 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + +HL+ LIN+ILD+S+IE+G+ ++ V + +A E+ I + Sbjct: 408 DVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRYKTEE 467 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQY 402 +L S+ D + Q++ NL+ NA KFT G V + + Sbjct: 468 VGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDAIWLR 527 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI + +SF QG + G GLGL I + GG+ + S++ Sbjct: 528 FSVTDTGCGIKPENRERIFSSFEQGDESSCRR-GGTGLGLAITKRFAEMMGGRISLSSEV 586 Query: 463 REGVEVIAILPNTRV 477 +G +P R Sbjct: 587 GKGSTFTVDVPFGRA 601 >gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 617 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGGGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI E +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTINIQSEIGKGSEFIINIPIKLVKEDLEKENN 593 >gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1276 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 166/401 (41%), Gaps = 18/401 (4%) Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 + + R + V + + +V T L Y + Sbjct: 393 ANRAQAVVALTTELAGAARRIVAVKSDMLSNDVAMQRIVADVDTTANRLAAYTEQEAVRV 452 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + AV +F ++VA+S + V+ L +A LS T + Sbjct: 453 DLQQRGIVSDVYRAVTSAFL-MIVAVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIR 511 Query: 209 KSNVKILSC----QAEKDDLIA-------ELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + L + E LIA E+E AE N AKS FLA MS Sbjct: 512 SGSDLSLRMSHKGRDEIAALIAGFNMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMS 571 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +E+++ + ++++ ++RSGQ LL +I++ILD S+IEAG Sbjct: 572 HEIRTPMNGVLGMTELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 + L +L ++ + + +++ A+ K +E+ + S+ + D +RQ++ NLL Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT G V ++ ++ I D+G GIA + F Q + Sbjct: 688 GNAIKFT-EHGHVGLSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYG 746 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I++ + GG + S +G P Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTTPFEPA 787 >gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus degradans 2-40] gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 1109 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 147/345 (42%), Gaps = 14/345 (4%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 S + L+ ML F + V+A ++ + I++ F + Sbjct: 322 ASSNWLAGVMLLSVWFTAMLLSVLAFFLSIRITNPIKAITIVANKLVKGDFSQRVQVQES 381 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + E E+ + AE + AKS FLA MSHE+RTP+N +L Sbjct: 382 NEFGLLANSFNELIQSRKYYEL---ELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVL 438 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ ++ P + + SGQ LL++IN+ILD S++EAG+ EL Sbjct: 439 GMLGLVLNSSLTP----EQERKLLLAQSSGQSLLSVINDILDYSKVEAGKLELEHLDFDP 494 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + + AQEK IE+ + D +RQ+I NLLSNA+KFT+ G Sbjct: 495 HRLLSDVVQSFNYSAQEKGIELVLDDIGLGGKVLRGDPSRLRQIINNLLSNALKFTSQ-G 553 Query: 388 RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + V S S+ D G GI +I + SF Q + G GLGL Sbjct: 554 EIIVRAKLDSEINGLNQLRCSVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLS 613 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I + + GG + S++ +G ++ + +P DN ES Sbjct: 614 ICKMLTRIMGGDIFVVSEVGKGTRFDFVVHVE-TGSCLPVDNAES 657 >gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329] Length = 858 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194 ++ A I + A + A + + V + +A A Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248 T I +F+ N+ + + +I + + A+ S+ R+ AE+ A Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ FLA MSHE+RTP+N ILG +++++ E K I + SG+HLL ++N+I Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367 LD S+IE G++ + + S D +R + + + K +E+ + ++ D+ Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVR 597 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422 + Q++ NL+SNAVKFT G V + + I D G GI ++ + Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479 F Q G GLGL I ++++ G +RS+ +G + LP RVL Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716 Query: 480 FI 481 + Sbjct: 717 PL 718 >gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] Length = 607 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 16/300 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 V+ + A + ++ R A + KS+FLA+ SHELRTPL Sbjct: 307 RRWSAVEVEFVRELAVQVGTAIAHATLYQELEQARAEAVALSQLKSQFLANTSHELRTPL 366 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N +LGF +++ + E ++I + +RS HLLNLIN++LD+++IEAG+ EL + Sbjct: 367 NGMLGFLKLVMDGM--ADDPEEEHQFIQEAYRSALHLLNLINDVLDIAKIEAGKMELELT 424 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382 I + ++++E Q + Q+K + + V+ + + + QV+LNL+ NA+KF Sbjct: 425 PIKINELLQEVENFTQAQLQQKQLNFKIQKPATQDEIIVYGNYQRLLQVMLNLVGNAIKF 484 Query: 383 TAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG + +++ I + D G G++ + + SF Q Sbjct: 485 THEGG-ISISMELIKKKIVIQNRELPGLVKIRVADTGIGVSLDKQDKLFQSFFQVDGDRT 543 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G GLGL I+Q ++ G S G V +P + I + E+ ++ Sbjct: 544 RQYGGTGLGLAISQKLVEAMRGTVNFYSMGEGLGSTVTFTIPLYQEPIMISTQSAETIEF 603 >gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 725 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 117/433 (27%), Positives = 179/433 (41%), Gaps = 10/433 (2%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 V S R P L +L+V + W LAV A L L V + Sbjct: 125 VTSPGRPGPPAALNMLIVGAVL-IGLDARRRFAWLAQVLAVAATALGLLGVVGHVYGVTL 183 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 V IA +LL L + A S A + Sbjct: 184 LYGQA----TVTGIAFPTALSLLALDVGLLCARPDRGFVANVASTGAGSALARRLLVYVL 239 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + + +A++ + + + + + + + + Q E+ Sbjct: 240 LLPVLLGGASLAVADAGEGGGLAVSLLVVVLSLLFVVLVLRDAVAIDRMEAGKIRAQQER 299 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 EL A + R AE N AK FLA++SHELRTPLNAILG+S ++ P Sbjct: 300 AASREELAHALRREQDARAHAESANRAKDEFLATLSHELRTPLNAILGWSGLLRDAGGDP 359 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E + I R+G+ L L++++LD+SRI AGR E+ + + L+ +V + I ++ Sbjct: 360 ---ERLARGLAVIDRNGRTLAQLVSDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRA 416 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+ K + I + P L V D +RQV NL+SNAVKFT GG V V +G G Sbjct: 417 AARAKGVAISRSAGPELPRVVGDAGRLRQVAWNLVSNAVKFTPPGGSVDVRLGR-EGGAA 475 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + +KD G G++ +P + F Q + G+GLGL I + ++A HGG S Sbjct: 476 VLEVKDTGVGMSRDFLPIMFDPFVQAEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESD 535 Query: 462 -LREGVEVIAILP 473 G ++P Sbjct: 536 GPGRGSTFRVLVP 548 >gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 653 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 23/334 (6%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 A+ + +V + ++ L + + + QA+ Sbjct: 91 LAINMQLQGQMVYVVETNLIFFLGSLWVTEIHELKPLGLRLNHFAVHDRVSDFLFLLQAK 150 Query: 221 KDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 L ++A + + ++ AE NLAKS FLA+MSHELRTPLNAILGFS+++ Sbjct: 151 NTALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLSR- 209 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + I+ SG+HLL L+N+IL++S+IEAG+ L + +L + Sbjct: 210 --DSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYN 267 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-- 394 + Q + K I + + ++ + AD K +RQV++NLL NA+KFT G+V++ V Sbjct: 268 LFQQKVFSKKINLKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNE-GQVYLKVASR 326 Query: 395 -----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ--GVGLG 441 S++D GPG++E + + F Q +S + G GLG Sbjct: 327 IYLDDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLG 386 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L I++ + GG+ I S+L +G +P Sbjct: 387 LSISRQFVNLMGGELSISSQLNKGATFSFSIPVK 420 >gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 1021 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/409 (21%), Positives = 155/409 (37%), Gaps = 18/409 (4%) Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 A L + + R++ + + + + + S Sbjct: 347 IAVMWLLLVRFHRRVLAPVYARSARVFD--SEALCRSVIAMAPVGIGLVSLSDRRVMLAS 404 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 L+ L + L V + V + + + Sbjct: 405 DALVQMLLPHGGDHHALSARVLERYDAFVADGGRGRTLVTELAVDAHGDAPLHLEIIAHA 464 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 Y + + + + L+ +E + A+ N AKS FLA+ SHE+RT Sbjct: 465 ARYQGEDVLIAVFTDTTAQRRLV-------QQLEEAVRAADSANAAKSSFLAATSHEIRT 517 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILG E++E + + + + + + S + LL ++++ILD S+IEAG + Sbjct: 518 PLNVILGNLELLERTAL----DASQQSRVRTLRASAEGLLAIVSDILDFSKIEAGAMSVE 573 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 LI ++ + + A+ K + +F +ID S+ + D + QV+ NLLSNA+K Sbjct: 574 SIEFELIAVIEQQLAAFAPIAKAKGLPLFVEIDASVEQRMRGDPTRLAQVLGNLLSNAIK 633 Query: 382 FTAIGG-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT+ G V V + +S++D G GI + + F Q +I G Sbjct: 634 FTSEGHIAARVAVWPDARGVPEVELSVEDTGIGIEPTQRARLFKPFSQVDASITRRYGGT 693 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVLNFIPEDNH 486 GLGL + ++ GG + S + G LP + P D Sbjct: 694 GLGLALCDRLVTAMGGTLSVESTPQVGSVFSVHLPLQADIAPTRPLDAS 742 >gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 837 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 22/355 (6%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 ++ ++ + + + ++ +PV + + ++ AG +A +S + Sbjct: 185 AVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVSLRIKHREGDLR 244 Query: 210 SNVKILSCQAEK----------DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L I+E A+ + ++ AE + AKSRFL++MSHE Sbjct: 245 WVSLSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHE 304 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+ AILG +E++ G + +E++ I RSG LL LI++IL +S+ E + Sbjct: 305 IRTPMTAILGVAELMS----GTHLDRVQREHVSIIRRSGDALLELIDDILVISQNEGAQE 360 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 + + ++ + M RA EK I++ + + V D +RQV++NL+ N Sbjct: 361 GEKQVVFDVDHLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGN 420 Query: 379 AVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A+KF+ G V + V G S+ DNG GI + + +F Q Sbjct: 421 AIKFSEK-GEVVIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESR 479 Query: 434 AEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I + ++ GGQ + S+ G +P + N E Sbjct: 480 RFGGTGLGLTICRRLVNLMGGQLELLFSEPGVGSTFAFDIPLQPAMEQANPANLE 534 >gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 786 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 9/257 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + A + S E+ +AE + AKS FLA+MSHE+RTP+N +LG +E++ + P Sbjct: 212 RPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTP 271 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 K + I +SG LL +IN+ILD S+I AG+ L + L + V + ++ Sbjct: 272 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSA 327 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R EKN+E+ ++DP L V D RQ++ NL+ NAVKFT G V + VG + Sbjct: 328 RVAEKNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEK-GHVLIDVGGETVND 386 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G GI ++ V F Q + +G GLGL IA ++ G+ Sbjct: 387 VVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 446 Query: 458 IRSKLREGVEVIAILPN 474 + S++ G +P Sbjct: 447 VESEIGRGSVFWFAVPL 463 >gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1204 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 10/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I EL+ + + ++ AE K FLA+MSHE+RTP+N ++G +++ + Sbjct: 666 RDITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIRTPMNGVIGMIDLLGETPL--- 722 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N K+Y+ I RS + LLN++N+ILDLS+IEAG+ EL E+ I++ +++ + + + Sbjct: 723 -NTEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQT 781 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+ K + + P + + AD+ + Q++ NL SNA+KFT G V V + G Sbjct: 782 AKSKGNTLSYHVGPDIPKFIIADQTRLLQIMSNLTSNALKFT-ENGSVKVFLTLVKKDGL 840 Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + ++D+G GI+ + + TSF Q + + + G GLGL I++ + A G+ Sbjct: 841 FHKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIG 900 Query: 458 IRSKLREGVEVIAIL 472 + S L EG Sbjct: 901 VESTLGEGSTFWFTF 915 >gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720] gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae] gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720] Length = 1082 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 149/341 (43%), Gaps = 26/341 (7%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224 V+ + ++A L + + F IT + + E D L Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMAANLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459 Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++ E R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + +E + ++ LL +I++ILD+S+IEA R + + SL V + Sbjct: 516 SLDTELTQYQREMLSIVNNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGNVFGALK 575 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L ++A EKN+++ + D S + D +RQVILNL NA+KFT G+V V+V + Sbjct: 576 TLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKK-GKVSVSVKKS 634 Query: 397 S-----GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + D G GI ++ + +F Q + G GLGL I++ ++ Sbjct: 635 DVTPADSDKLLLEFNVSDTGIGIERDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLI 694 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GG+ + S G + V + ES Q Sbjct: 695 QLMGGEIWVTSDYGHGSCFSFTV---SVSQSKIKYTSESEQ 732 >gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 540 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 138/261 (52%), Gaps = 9/261 (3%) Query: 219 AEKDDLIAELEVAKSLSDET---RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +E + A L E R +AE N +KS FLA+MSHE+RTP+ AILG+++++E Sbjct: 114 SEIKARVRNAIRALQLLREQKTLRIQAEAANQSKSAFLANMSHEIRTPMTAILGYTDILE 173 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 LE E + + I R+G HL+ LIN+ILDLS+IEAG+ ++ S IV E Sbjct: 174 LEAKSLQLPELISDSLDTIKRNGGHLMELINDILDLSKIEAGKLDVESICCSPQTIVEEV 233 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + ++Q+RA+ K +++ L + +D +RQ+++NL+ NA+KFT + G + + Sbjct: 234 LELVQVRAEAKGLKLEASYQFPLPAEIHSDPTRIRQILINLIGNAIKFTEV-GTIRLNTS 292 Query: 395 WTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + G ++ D G G+ E ++ + F Q + G GLGL I + + Sbjct: 293 FLENPGEEPQVQFTVIDQGIGMTEAQMSNLFRPFSQADSSTTRKYGGTGLGLTICKRLTD 352 Query: 451 NHGGQFLIRSKLREGVEVIAI 471 GG + SKL +G + A Sbjct: 353 VLGGDISVTSKLNQGSQFSAT 373 >gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 574 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 K+ L +E+ R+ +E N AKS FLA MSHELRTPLN++LG +V++ M Sbjct: 187 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 246 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + + S LL +I++ILDLS+IE+G + LS I++ D V + Q Sbjct: 247 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 302 Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 L A K + I I+ W D + QV+ NL+ NAVKFT G++ + V Sbjct: 303 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 360 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G GI + +I ++ T+F Q +I G GLGL I + ++ G + Sbjct: 361 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 420 Query: 460 SKLREGVEVIAILPNT 475 S+ +G + +P Sbjct: 421 SQFGKGSTFVVKIPVK 436 >gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 13/275 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + +++AE N AKS FLA+MSHE+RTP+N ++G ++ ++ + Sbjct: 821 ADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDLSLMQKLPT- 879 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY +S HLL++I +ILDLS+IEAGR EL+E + D+V + L L Sbjct: 880 ---RVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALT 936 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A +K +++ +D + + D +RQV+ NL+SNAVKFT GRV V V T Sbjct: 937 AADKGLKLLHAVDADIPPLLCGDPVRLRQVLANLVSNAVKFTHK-GRVLVNVERTGHDLP 995 Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S+ D G GI ++ + SF Q A + G GLGL I++ ++ GG Sbjct: 996 RDEVRLLFSVSDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGH 1055 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S + +G + R + +P+ T+ Sbjct: 1056 IGVESVMGKGSRFFFTV-RLRKADAMPKAERSETE 1089 >gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 1167 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 6/373 (1%) Query: 106 WRIWLLVGQIAIGLCW-TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 +L+ + G ++ L PG + + I S++A V Sbjct: 341 APRTVLLLPVMNGGIVNGVVELGLPGAPDERASQLLDVVSDDIGTSLAAARYREQLQDVL 400 Query: 165 LSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + L Q + + L + + L ++N ++ D Sbjct: 401 AETQQLNEELQVQQEELRTANEELEEQSKALRASQAMLENQQAELEQTNSQLSERTEALD 460 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L + ++ + + KS FLA+MSHELRTPLN+ L ++++ G L Sbjct: 461 QRNTALRRVQRDLEDRADELQRASRYKSEFLANMSHELRTPLNSALILAKLLGDNPQGNL 520 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E K + I+ SG LL LIN+ILD++++EAG+ E+ +SL + Sbjct: 521 TLEQVK-FAESIYSSGNDLLVLINDILDIAKVEAGKLEVVPEDVSLARLAESLESTFSPL 579 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A +KN+ ++ P + + D + + Q++ NLLSNA+KFT G V + V T+ G Sbjct: 580 AMQKNLSFRLELQPGAPASLVTDRQRVEQILKNLLSNALKFTDK-GEVALVVSATADGGA 638 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D+G GI + + +F Q G GLGL I++ + GG ++S+ Sbjct: 639 AFAVSDSGIGIDAQQHELIFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLGGTLTVQSE 698 Query: 462 LREGVEVIAILPN 474 +G + LP Sbjct: 699 PGKGSTFVLQLPA 711 >gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 539 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 11/273 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + ++ E ++ AE AKS FLA+MSHELRTPL +++GFS +++ Sbjct: 134 RDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQ---GSEH 190 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ I + + LL +IN+ILD S++EA E+ +V +++ + Sbjct: 191 LPPEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQ 250 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGR 399 K + + + + D+ +RQV+LN LSNAVKFTA G V +T+ + Sbjct: 251 CSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTAR-GEVTLTLDGRFDESG 309 Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + + D G GI +I + F Q + G GLGL I++ ++ GG+ Sbjct: 310 LWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEIG 369 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S +G P + D E+ Q Sbjct: 370 VDSTPGQGSTFWFEAPLA--VAEAENDAVETRQ 400 >gi|261252516|ref|ZP_05945089.1| sensor histidine kinase [Vibrio orientalis CIP 102891] gi|260935907|gb|EEX91896.1| sensor histidine kinase [Vibrio orientalis CIP 102891] Length = 810 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 10/308 (3%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 V+V + +M + L ++ + ++K + E LI Sbjct: 274 AVIVPIMLVFVMLGYFLINRFLISPVVVVARSVQESKEGGSIDLK-YNSNDEIKYLIDSF 332 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 +E + +A+ AKS FLA++SHE+RTP+N +LG ++++ + + Sbjct: 333 NQKTVYLEEEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTDLTS----EQR 388 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ ++ SG+H++ L+NEILD S++E G EL + L I+ + EK + Sbjct: 389 KHMKTLYESGEHMMTLLNEILDFSKVEQGHLELERAPFPLEAIIGSINSVYYTLCSEKGL 448 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YIS 404 + + P D+ +RQ++ NLL+NAVKFT+ G V V + G+ I Sbjct: 449 QFKVYSEVPESRWYRCDKARLRQILFNLLNNAVKFTSR-GYVEVGFKEQTRNGRNFLVIQ 507 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + V F Q + G GLGL I + + G+ + S++ Sbjct: 508 VRDTGIGIDKAVQDKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCDLMDGEIKLTSEVGI 567 Query: 465 GVEVIAIL 472 G L Sbjct: 568 GSCFEVAL 575 >gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 717 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + L AE+ + +K AE N+AKS FLA+MSHE+RTP+N I+GF++++ Sbjct: 165 QQRNYSETLQAEIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNGIIGFTDMLL 224 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E +E+ I RS LL+LIN+ILD S++EAG+ +L ++ Sbjct: 225 DTGL----DEEQQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFDPEITAQDV 280 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +++ + + IE+ +ID +L + V D RQV++NL+ N+ KFT G + + + Sbjct: 281 CDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTKK-GELELAIA 339 Query: 395 WTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + I+ I+D G GI E ++ ++ +F Q + G GLGL I + I A Sbjct: 340 VDDETEETITLHARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLSICRKIAA 399 Query: 451 NHGGQFLIRSKLREGVEVIAI 471 G S+L G Sbjct: 400 LMHGHVWAESELDVGSTFHFT 420 >gi|295094505|emb|CBK83596.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1] Length = 624 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 87/441 (19%), Positives = 185/441 (41%), Gaps = 35/441 (7%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + ++ + +L + KK++ + Sbjct: 56 MVDAGLVRMPAAVVFVLNCGFMIAETFVTYEWFYFFESIQNSLFVEKKIIRAL------- 108 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--------IALSISALSN 156 +L+ + + WT T ++ +L + +I Sbjct: 109 RSIPLVLMIVLCVVSWWTGWLFYVDDTGMYRRGALFALQVVLPYTYVFVTLVSAIVYSIT 168 Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + + ++ AL + + LAG+ +A+ + +++ Sbjct: 169 RREKRSAVIITIALIPALICSVLQIVAGGSYVLAGLTLSAMFVY-----------IELCM 217 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 K + + +E A + A + N AK+ FL SMSH++RTP+NAI+GF++++ Sbjct: 218 EDIRKVEKLEVIEKANHELENALDMANKANNAKTVFLNSMSHDIRTPMNAIIGFTDLLND 277 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + ++YI I S +LL+LIN +L+++RIE+G+ EL ES+ISL + Sbjct: 278 NL---SDQDKARDYIAKIRSSSDYLLSLINNVLEMARIESGKTELDESSISLKSL-DSVY 333 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 + + + +EKNI+ ++ +++ D ++++++N+++NA K++ G V V + Sbjct: 334 WLFESQMKEKNIDFTWNVNVKHNNILCDVVKIKEILMNIINNAYKYSLPGDSVAVKIDEL 393 Query: 396 --TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I + D G G++E + + F + + +S + G GLG+ I + I+ Sbjct: 394 PCDRDGYVRIRTVVSDTGIGMSEDFLEHIFEDFSREQTSTESGQFGTGLGMAIVKKIVDL 453 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG ++S+ +G L Sbjct: 454 MGGDIDVQSEPGKGTTFTVTL 474 >gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 563 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 16/285 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H + ++++ A++ ++ AEE + KS FLAS +HELRTPL Sbjct: 276 RHWRPAEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPL 335 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+GF ++ +++ +E++ + H+S HLLNLIN+ILD+++IEAG+ +L Sbjct: 336 NGIIGFLRLVLDGM--ADDSQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEVG 393 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV--WADEKGMRQVILNLLSNAVKF 382 ++ L ++ +AQ K + K P+L+ + + + + + QV+LNL+SNA+KF Sbjct: 394 SVELAELFEAIDNFTLPQAQRKRLNYSSKYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKF 453 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG + +T + + D G G+A + + F Q + Sbjct: 454 THDGG-IDITAEIVKKKLYWRDREFPGMIKVRVSDTGIGVALEKQAKLFEKFVQVDGSHS 512 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476 A G GLGL I+Q ++ GGQ S G V +P + Sbjct: 513 KAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 557 >gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] Length = 762 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 7/265 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ K + AE+ N AKS FL++MSHE+RTP+N I+G + ++ + N Sbjct: 363 ISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNGIIGMTGLLLETPL----N 418 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E+ I S LL +IN+ILD SRIEAG+ + A +L V CI ++ +A Sbjct: 419 TEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFALPATVAGCIDVIAGKAC 478 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + IDP+L V D +RQ++LNLL NA+KFTA G+V + V Sbjct: 479 DKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTAT-GKVALHVTPVLAGAVRF 537 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D+G GI + + F Q +I G GLGL I + ++ GG S Sbjct: 538 VVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFESVPG 597 Query: 464 EGVEVIAILPNTRVLN-FIPEDNHE 487 +G LP P+ + + Sbjct: 598 QGATFWVELPLAVAEPVSAPDVDAQ 622 >gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] Length = 1611 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 11/265 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +++ + A+ ++ AEE KSRFLA+MSHE+RTPLNAI+G S + + + Sbjct: 857 VSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKSGL----D 912 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+ + ++GQHLL +IN+ILD S+IEAG+ + S +L ++ ++ +A Sbjct: 913 ARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGFKAA 972 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K +E+ + P + + D + Q+++N +NAVKFT G +H+ V G Sbjct: 973 AKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQ-GEIHLLVRLERNEGARV 1031 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA ++ + SF Q + G GLGL I++S+ GG+ +R Sbjct: 1032 WLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVGVR 1091 Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484 S+L G +P R +P Sbjct: 1092 SELGHGSAFWVTVPLER-GEPLPRA 1115 >gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] Length = 979 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 12/251 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + + R++A E KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 593 LITERKRQEKALIAAREKALESERLKSAFLANMSHEIRTPLNAIVGFSSLL----TATED 648 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + +E+I I + Q LL L+++ILDLS+IEA E + + L + ++ ++ R Sbjct: 649 EQEREEFISIIENNNQLLLQLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRL 708 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N+ + + V ++ + QV++NLL NA KFT G + G+ Y Sbjct: 709 K-PNVVLEFIPGAAQCHVQTEKNRLSQVLINLLVNATKFTQT-GSITFGYEIR-GKELYF 765 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462 +KD G GI++ + + F + + QG GLGL I ++I+ G+ + S+ Sbjct: 766 YVKDTGMGISQEDQNKIFERFTKVD----TFTQGTGLGLSICKNIIEKMKGRIGVESEGK 821 Query: 463 REGVEVIAILP 473 +G +P Sbjct: 822 GKGSTFWFTVP 832 >gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 2508 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 142/291 (48%), Gaps = 20/291 (6%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRF 252 AL+ ++ L +A L AE + AK E ++ AEE AKS F Sbjct: 1898 ALAMKAVEKVSAENVSMVALQKRALAKALEAETK-AKHAEAEAKRNVKLAEEAAKAKSIF 1956 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA++SHELRTPLN ++G SE+++ + ++ +E +I S + LL +IN+ILD S Sbjct: 1957 LANVSHELRTPLNGVIGNSELLKDSEL----DKDQQEMADNIKVSAELLLTVINDILDFS 2012 Query: 313 RIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 R+EA + +L A + ++VRE + + + + ++KN++I Q I+ ++ D + Sbjct: 2013 RMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQKTKQKNVKIIQDINLPSMLIFGDPIRL 2072 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSF 424 QV+ NL+SN++KFT G + + S ++D G GI + ++ + F Sbjct: 2073 HQVLGNLISNSLKFT-EDGSITIGARVESETNDKATLLFRVQDTGIGIPQQQLVKLFQPF 2131 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAIL 472 Q + G GLGL I +S++ G+ + S+ G Sbjct: 2132 SQADTSTARKYGGSGLGLSICKSLIETMMKGKIQLDSQEGVGTTAWFKVTF 2182 >gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 587 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E ++ F+++++HEL+TP+ +I GF E ++ + + ++ I + Sbjct: 360 RKLE---QLRTEFVSNVTHELKTPITSIRGFIETLKSGAINKPDVSE--RFLDIIDIEAE 414 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + + SL I+ +++ A EKN+ + +D + Sbjct: 415 RLHELINDILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKIL 474 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + A+ M+Q++LNL+ NA+K+ G V V G IS+KD G GI IP Sbjct: 475 -IKANRNRMKQLVLNLVDNAIKYNIPTGSVTVDAQRV-GGKVVISVKDTGIGIPPDHIPR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + G GLGL I + I+ + G + S++ +G E I LP Sbjct: 533 IFERFYRVDKGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLP 586 >gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 921 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I N Sbjct: 514 ITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAES----ENK 569 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + + + + LL LINEILDLS+IE+G E + + I++ + +E R Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + +++ + + + D+ + QV NL+ NA KFT G ++ G+ G Sbjct: 630 Q-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVF 685 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI +I V F + + QG GLGL I ++I+ GG+ + S + Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNN----YAQGTGLGLSICKTIVERLGGEISVSSVVG 741 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 742 QGTTFTFTLP 751 >gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 593 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L ++L + + + A+EK + + + I S Sbjct: 418 LVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDIAVSQPECVF 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T GG VH+ I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ HGG + S + +G +P Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFTFYIPTK 588 >gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas fluorescens SBW25] gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase [Pseudomonas fluorescens SBW25] Length = 464 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 160/356 (44%), Gaps = 30/356 (8%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 L + P AL +A + + + L I Sbjct: 106 RAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTALRNRYDTI 165 Query: 215 LSCQ------AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + AE + + +E E + KS FLA+MSHELRTPLNA++ Sbjct: 166 IGYLLIGTDNTARKQEEAERKGFERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVI 225 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GFSE ++ +G +++ T +EYIGDI SGQHLL+LIN+ILDLS++EAG EL A+ L Sbjct: 226 GFSEALKDGLVGEMSD-TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMELELEAVEL 284 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ +++++ +A I++ + L + D + +Q++ NLL+NAVKF+ G Sbjct: 285 AGLLANSLLIVREKAALHRIQLKLESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSS 344 Query: 389 VHVTVGWTSGRGQ-----------------------YISIKDNGPGIAEGEIPTVLTSFG 425 V +TV +S+ D G GIAE ++ + +F Sbjct: 345 VTLTVRQVPREQVGQIPGEWPVYNFALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFS 404 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 Q ++ +G GLGL + + + HGG + S+ G +A LP R Sbjct: 405 QIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGCGARFVAWLPLHRAPEAA 460 >gi|153826223|ref|ZP_01978890.1| sensor histidine kinase [Vibrio cholerae MZO-2] gi|149739988|gb|EDM54163.1| sensor histidine kinase [Vibrio cholerae MZO-2] Length = 736 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 11/283 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 324 KSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILL 383 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++++ ++ SG+H+++L+NEILD S+IE G++EL SA L I+ Sbjct: 384 KDELTS----KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ + + D+ +RQ+I NLLSNAVKFT G V + + Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEA-GFVAIGLS 498 Query: 395 WT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I ++D G GIA+ + + F Q G GLGL I + I Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G L++S++ +G + ++ + T+ K Y Sbjct: 559 MNGNVLVQSEVGQGSCFKVR--VKLAITEPVTEDVKPTKAKTY 599 >gi|302669543|ref|YP_003829503.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394016|gb|ADL32921.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1419 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 19/313 (6%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++ + L + L + L +K + Sbjct: 764 RFLLVKKPRLVELFAVKLLILVVVAFAAGFLVWRILKA-----------TVVTKQYEEIT 812 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE---TYKEYIGD 293 + ++ AE N AKSRFLA+MSHE+RTP+N ILG E+I E + + Y D Sbjct: 813 KAKEEAERANTAKSRFLANMSHEIRTPINTILGMDEMILREDARDVPKAYFLSIMNYSLD 872 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + + LL LIN++LD+S+IE+G+ L E + D +R + M++ R+ EK + Sbjct: 873 IKNATESLLGLINDLLDMSKIESGKMHLVEQEYDVQDQLRSIVSMIRSRSTEKELIFEVV 932 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNG 409 ID L ++ D ++QV+LNLL+NAVK+TA G V + S+KD G Sbjct: 933 IDEILPTRMYGDNGKIKQVVLNLLTNAVKYTAAGAVEFSVSMEARNDDICDLRFSVKDTG 992 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ E ++ + T++ + S QG GLGL I++ GG+ S EG E I Sbjct: 993 IGVKEEDMDKLFTAYERLDEEKNSGIQGTGLGLDISRRFAELMGGKLWCESVYGEGSEFI 1052 Query: 470 AILPNTRVLNFIP 482 L R+++ P Sbjct: 1053 LTL-QQRIVDDTP 1064 >gi|290960529|ref|YP_003491711.1| sensor kinase [Streptomyces scabiei 87.22] gi|260650055|emb|CBG73171.1| putative sensor kinase [Streptomyces scabiei 87.22] Length = 1391 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 14/309 (4%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 A V I +A A S + + +++ E AEL + + +E Sbjct: 871 AFFDQFVNTIGVAINTIIANSRTESLLGESQRLAMQLQERSDELQAQQAELRRSNAELEE 930 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + KS FLA+MSHELRTPLN++L + ++ G L ++ + + IHRS Sbjct: 931 KAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLTDQEVQ-FATTIHRS 989 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL LIN+ILDLS+IEAGR ++ + LI ++ + ++ + + + Sbjct: 990 GSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAFEVAVGEN 1049 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----------RGQYISI 405 + +++DE+ ++Q++ NLLSNA+KFTA GRV + V ++ Sbjct: 1050 VPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELAVNRVKDPDHRFTREHHDEVIAFAV 1108 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GIA ++P + +F Q G GLGL I++ I GG+ + S +G Sbjct: 1109 SDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIAESVPGKG 1168 Query: 466 VEVIAILPN 474 +P Sbjct: 1169 STFTLYVPV 1177 >gi|156973910|ref|YP_001444817.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156525504|gb|ABU70590.1| hypothetical protein VIBHAR_01620 [Vibrio harveyi ATCC BAA-1116] Length = 806 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELE 229 ++ L +L YI + + K + E LI + Sbjct: 274 RGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDITYDSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTVYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E+ + + I+ + EK ++ Sbjct: 390 HLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSTNSVYHTLCAEKGLQ 449 Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405 + P D+ +RQV+ NLL+NAVKFT G V V + Q IS+ Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GYVEVELTEYVEGQQTRLRISV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI+ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISPDAQERIFRPFEQAESSTTRRYGGTGLGLAIVKQISEHMGGSITVQSQECIG 568 Query: 466 VEVIAIL 472 + + L Sbjct: 569 TKFVVEL 575 >gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1240 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 7/327 (2%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL-FKSN 211 A+++ L V + + + + + +S + + ++ + K Sbjct: 466 AVTSAFLMIVVVSFLLAIGGFVISHRLGTSIARPLSSLTRTMARIRSGSDLSLRMSHKGR 525 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +I + A + ++ E+E AE N AKS FLA MSHE+RTP+N +LG + Sbjct: 526 DEIAALIAGFNMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMT 585 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E+++ + ++++ ++RSGQ LL +I++ILD S+IEAG+ L +L + Sbjct: 586 ELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQL 641 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + +++ A+ K +E+ + S+ + D +RQ++ NLL NA+KFT G V Sbjct: 642 LDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFT-EHGHVA 700 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 ++ ++ I D+G GIA + F Q + G GLGL I++ + Sbjct: 701 LSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLAISRQLAE 760 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV 477 GG + S +G P Sbjct: 761 MMGGTLALDSTPGKGSVFTVTTPFEPA 787 >gi|167645228|ref|YP_001682891.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347658|gb|ABZ70393.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 687 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 102/447 (22%), Positives = 180/447 (40%), Gaps = 17/447 (3%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 +PI+ ++ A + T P + + L + + E Sbjct: 129 TAPIILAMAVVCATVLTLLHGLPFVTVLTDWFLCGALGMAIVLP--AVLVLLDSEHRRAF 186 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 L QI + L LT + A LL+A + V Sbjct: 187 QRPLPEQIGLFLLVATLTASVFYAKGLPAPFLLFPAVLLVAFRLGPRGAAQASLIVACVA 246 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P+ V + S A F + + + + + + L+ Sbjct: 247 IPLTV---QGLWTQQISTNWSQAQQNRLVQVFVGVLFVSSLATGLALAQQERLRRLLVRR 303 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 ++ ++ N AK+ FLA+MSHE+RTPLN++LGFS+++ P + Sbjct: 304 EQLTRAARARALAA----NEAKTEFLATMSHEIRTPLNSMLGFSQLLVERQDLPADA--- 356 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + ++ I +G LL ++N+ILD SR+EAG+ EL S ++ + + +++ AQ K Sbjct: 357 RRHLALIDSAGTALLTVVNDILDFSRVEAGQVELLFQPTSAAAVLHDAVGIIRPEAQNKG 416 Query: 348 IEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQYI 403 + + ++ + + D +RQV+LNLL+NAVKFT + GR+ + G Sbjct: 417 LTLEVEVVDPVGGLHDLDGLRLRQVLLNLLNNAVKFTEV-GRIRARLTIEPGEIEDRLRF 475 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G GIA + + F Q + A G GLGL I+++++ GG+ + + L Sbjct: 476 EIVDTGVGIAIEQQNRLFQRFSQVDSSASRAYGGAGLGLAISKALVELMGGKIGVDTALG 535 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 G L +V + P + + Sbjct: 536 HGSVFWLELSAPQVEAYDPGEPQPVAE 562 >gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 773 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 2/237 (0%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RAE N AKS FLA+MSHELRTPLNAI+GFSE++E GPL +E Y+EY DI+ SG+ Sbjct: 530 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEYATDINSSGK 589 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +LL +IN+ILD+S+IEAG++ L I L ++ E + ++ L+A +K I + +I +L+ Sbjct: 590 YLLGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISVETRIADALT 649 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V AD + ++Q+++NLLSNAVKFT GG + V T ++I+DNG GI + + Sbjct: 650 LV-ADRRAIKQIVINLLSNAVKFTGHGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 707 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + G GLGL I++S+ GG IRS G V +P + Sbjct: 708 LGRPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSSEGVGTIVSVRIPVKK 764 >gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 943 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 9/281 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++V LS E + + + R++AE + AKS FLA+MSHE+RTPL+ I+ Sbjct: 405 DADVHRLSLLGEGVLAHVKERSRERDLERARRQAEAASRAKSDFLANMSHEIRTPLSGII 464 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +++ T+ +E + I S + LL ++N+ILD S+IEAG+ E S L Sbjct: 465 GLTQM----TLSQTPRPEVRENLEMILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDL 520 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 + + + Q +++K +++ +I + V D + QV+ NL+ NA+KFT G Sbjct: 521 REALDRTMKPFQFSSRQKGLKLSVRIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQ-G 579 Query: 388 RVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V V S++D G GI E +P + F Q + G GLGL I Sbjct: 580 EVAVEFRLLRPGDPLLVECSVRDTGIGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAI 639 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 ++ ++ GG + S+ G + ++ Sbjct: 640 SRRLVEMMGGTIGVESRSNHGSTFSFTVSLRPAREEQRDEA 680 >gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium] Length = 1329 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 13/265 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 826 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 884 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 885 MAPEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG+ + S +G L Sbjct: 945 LVTLMGGRMWVESDFGKGSVFYFTL 969 >gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 714 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + ++ I + ++ + +L + + ++ A E + AKS F Sbjct: 154 VMDSIQMLATIIFMSVAGALESFELYRNIRQMNNQLTQSNAELRTAKEAALEASRAKSEF 213 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTP+++I+ +++ + + S + L ++IN+ LDL+ Sbjct: 214 LANMSHELRTPISSIISGLKLLA----PMEEDPQKLSILNTCKDSAEALHSIINDSLDLA 269 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 +IEAG+ EL L + + + + +A K +++ ++DP L V AD + Q+ Sbjct: 270 KIEAGKIELIPENFDLHHELAKNLNTFRPQAGTKGLDLRLQMDPGLPRLVRADMHRLGQI 329 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + NLLSNAVKFT G V + G ++D G GI + +P + ++ Q Sbjct: 330 LRNLLSNAVKFTRE-GWVELGAEVLIKNEKSCGVNFWVQDTGIGIPKDVLPRLFEAYAQA 388 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV----IAILPNTRVLNFIPE 483 + G GLGL I + ++ GG + SK EG LP + + Sbjct: 389 DGSYSKKYGGTGLGLAITRYLVRLMGGSISVHSKEGEGSCFTLNITFELPPEGQAEEVQD 448 Query: 484 DNHES 488 + E Sbjct: 449 PDAEE 453 >gi|1262208|gb|AAB03698.1| Nik-1 [Neurospora crassa] Length = 1298 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 676 ELKKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 735 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 736 DTDLTQY----QREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 791 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++ EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 792 LKTLAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 850 Query: 395 W-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 T + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 851 KASSVQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKR 910 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G + Sbjct: 911 LVNLMGGDVWVKSEYGKGSKFFFT 934 >gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1125 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 16/259 (6%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ + E + + I SG+ Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N++LD+S+IEAG+ EL +L ++ + + +++ A + + + +IDP L + Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410 V D +RQV+ NLL+NAVKFT G V +T + I D G Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I ++ GG + S+ G Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817 Query: 471 ILPNTRVLNFIPEDNHEST 489 L R P +T Sbjct: 818 TLALPRA--TTPPAAQPAT 834 >gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] Length = 1012 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 132/254 (51%), Gaps = 8/254 (3%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++ AE+ N AKS FL+ +SHELRTPLN+ILG+++++ E E Sbjct: 628 SNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQIL-EEQGEKDLTEKQLNR 686 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I I ++G HLL LINE LDLS+IE+G ++ +S+ + + + + +++ A++K+ + Sbjct: 687 IRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSIL 746 Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + + DE +Q++LNLL+NA+K++ + + T ISI+D G Sbjct: 747 YTRFHAYQEVFIEVDELRFQQILLNLLTNAIKYSPAYRDITIYTDITQ-HHVTISIEDKG 805 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E+ + F + + K G G+GL + + ++ G +RS+ +G Sbjct: 806 FGIPASELNRIFEPFYRVNRLEKD---GTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFW 862 Query: 470 AILPNTRVLNFIPE 483 P V +P+ Sbjct: 863 VRFPI--VHPPVPK 874 >gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] Length = 732 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 10/242 (4%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ + AE KS+FLA+MSHE+RTP+N ILGF ++++ + P ++++ I Sbjct: 353 LNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHLTP----EQEDFLHHI 408 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + S + LL +IN+ILDLS+IEA + L +L I+++ + + + K I+I Sbjct: 409 NSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFTA 468 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGP 410 + + V+ DE ++Q+ NL+SNA+KFT G+V +T+ ++++D G Sbjct: 469 NAAY-WVYCDEMRVKQIFTNLISNAIKFTLK-GKVTLTLKKITATDENTQFEVNVEDTGI 526 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA+ I + F Q G GLGL I++ ++ G + SK G + + Sbjct: 527 GIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFLV 586 Query: 471 IL 472 L Sbjct: 587 RL 588 >gi|120554284|ref|YP_958635.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120324133|gb|ABM18448.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 644 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 12/292 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + ++ + L + + ++S+ R++AE + AKS FLA+MSHELRTP Sbjct: 228 AREIAEIQQQLNELAVHLEQLRSARDQTLAISESAREKAEHASQAKSEFLATMSHELRTP 287 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG ++I E + +Y+ +S + LL +I++ILD +R++ G L + Sbjct: 288 LNGVLGMVDLIHEEPLTK----RQSDYLTTARQSTEDLLTVISDILDYARMDNGNLVLDQ 343 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAV 380 A L + C+ + A+++ + + + P +V D +RQ++ L+ N++ Sbjct: 344 QAFDLQSLFTNCVASYRHAAEKQGLSLDLQFLGEWPRHPAVLGDAPRVRQILAGLIDNSL 403 Query: 381 KFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT+ G V + V W + S+KD+G GI + +V SF Q A Sbjct: 404 KFTSE-GFVGIRVNWLELENHCVLVQCSVKDSGSGIPAERLQSVFNSFEQLDAGDNRAHG 462 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL + Q ++ GG + S + +G LP P D Sbjct: 463 GTGLGLSLVQRLVELMGGHVQVESDIGQGSSFRFELPFELAYQNPPTDEPRE 514 >gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 562 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 21/293 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQA-------EKDDLIAELEVAKSLSDETRKRAEEEN 246 A+ + + + + +L A E L AEL+ + + + A Sbjct: 127 TAAIGAYWARRHRPSRRELSVLQALADATSVAMENVRLYAELQERIAELESQKALAVAAT 186 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA+MSHE+RTPLNAILG +E+ E + KE+ I +SG+ LL++IN Sbjct: 187 RAKSEFLANMSHEIRTPLNAILGMAELAERRC-----PQHVKEHFKLIRQSGRALLDIIN 241 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILDLSRIEAGR+ + + + + + A+EK + + + P++ + DE Sbjct: 242 DILDLSRIEAGRFAPQRKPFQPREALDSVLGPMSMIAEEKGLALNLAVSPTVPVWLVGDE 301 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-------ISIKDNGPGIAEGEIP 418 +RQV+ NLL NA+KFT GR+ + V Q+ S++D G GI Sbjct: 302 GRLRQVLTNLLGNALKFTER-GRIELHVAREPSDLQHPEAVRLHFSVRDTGIGIPAERQQ 360 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + SF Q + + G GLGL I++ ++ GG+ + S+ G Sbjct: 361 AIFQSFSQAEASAHAKYGGTGLGLTISKELVERMGGRIWVDSEPGLGSTFHFT 413 >gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 847 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 165/305 (54%), Gaps = 2/305 (0%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVA 231 LS + V +++ G T + + + +S + + + E IAE A Sbjct: 531 ILSLVFVPLPGVGVVNVYGSDITGRIAAERLLHMVNESLERRVHQRTEALKAEIAEHIRA 590 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++A+ N AK+ FLA++SHELRTPLNA++GFSEV+ E GPL + Y Y+ Sbjct: 591 ERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMAAEMFGPLGSARYVGYV 650 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 DI SG+HLL +IN+ILD+++IEAG+ E + ++V I +++ RA + + Sbjct: 651 NDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVVAAAIRIVESRADAGGLVLG 710 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 I + ++ AD + + Q+++NLLSN+VKFT GG V VTV G ++ D G G Sbjct: 711 SHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEVTVEVL-GDMVGFTVSDTGIG 769 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +++ E+ + F Q ++ G GLGLP+ ++ + HGG I S+ EG +V Sbjct: 770 MSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHGGHLDIVSRKGEGTQVTVR 829 Query: 472 LPNTR 476 LP Sbjct: 830 LPQEP 834 >gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 17/348 (4%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 P + A L ++ S+ +SN + +FL+ V +L I Sbjct: 129 VLHVSVPVKNKLNYVAILRLSSSLEEVSNIIKRLVLFLALVLTVSSLVALII------GF 182 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 +A L L T + K N K+ + + D++ + +++E + EE Sbjct: 183 FIANELTKPLEMVKKATQEMAKGNFKVRAEKTSNDEIGILADSFNKMAEE-LGQLEE--- 238 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K+ F++++SHEL+TPL +I GF+ N EY+ I L L++E Sbjct: 239 MKNEFISNISHELKTPLTSIKGFAITAMDLV---EKNSELYEYLNIIDEETDRLSRLVDE 295 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LD S+IE + +LS + L ++ + + +L+ A + + K + D Sbjct: 296 LLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNLICKKKIDRVVINGDVNR 355 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++QV++N++ N +K + G V V + + I I+D G GI + EI + F +G Sbjct: 356 LKQVLVNIIDNGIKACSRGKYVKVFLDI-KDKKAVIRIEDQGQGIPQEEIKYIFDKFYRG 414 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ I+ H G + S++ +G LP Sbjct: 415 KN---NKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLK 459 >gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1142 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 130/265 (49%), Gaps = 10/265 (3%) Query: 224 LIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ +A + R AE N AK FLA MSHELRTPL A+LG+++++ P Sbjct: 737 LVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDP 796 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E + I R+ + L LI ++LD+SRI G+ L + A+ L +V+ + +++ Sbjct: 797 AIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRP 853 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 RA++K + + + V D ++QV NLL NAVKFT GGRV V V Sbjct: 854 RAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEW 912 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + IKD+G GI +P + F Q + G+GLGL I + ++ HGG+ S Sbjct: 913 RVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESA 972 Query: 462 -LREGVEVIAILPNTRVLNFIPEDN 485 L G LP V +PE Sbjct: 973 GLGHGSTFTVRLP---VPALLPEPE 994 >gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 724 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 150/345 (43%), Gaps = 23/345 (6%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V + L + + + G+L + T + S + + E Sbjct: 119 VVVPTLTGTDTLVLHVLATNSRIRGMFVGILPGSHLSAEVSTLNALSSILINTAYAVENS 178 Query: 223 DLIAELE-----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +L L+ + +E +AE AKS FLA+MSHE+RTP+N ++G + Sbjct: 179 ELYDMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLA 238 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + ++ + Y+ + ++LL +INEILD+S++EAG L L Sbjct: 239 KLLMETPL----DKVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRF 294 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + LR QEK + + + P L V D +RQ++ NLL NA+KFT G + Sbjct: 295 LDRSLQPFVLRGQEKGVRVRLEAYPGLPELVLGDPVRLRQILGNLLGNALKFTQK-GSIT 353 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 +T T G S+ D G GIA I + F Q + G GLGL I++ Sbjct: 354 LTAALTGSGENGVGLKFSVADTGIGIAPEAIEVIFEKFSQADSSTTRLYGGTGLGLSISK 413 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT--RVLNFIPEDNHEST 489 S++ GG+ ++S L +G + + + E+ E+ Sbjct: 414 SLVELMGGELSVQSALGKGSVFSFCIELSQPKAGERPAEEEGEAP 458 >gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1186 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 26/312 (8%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 I++ ++ L Y + L Sbjct: 751 IVNPPWWRSRFGIAVMVLVGMMLGVLLAAAYRRR-----------------VRMRAQWQL 793 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R+ AE+ + AK+RFLA++ HE+RTP+ +LG SE++ + + + Y I Sbjct: 794 AQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGRQQGYASAI 849 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+HLL L+N+ LDL+RIEAG+ L + L ++R+ + +++ A++K + + Sbjct: 850 QSAGKHLLRLVNDALDLARIEAGKLALDDRDFDLRQLIRQVVDLVRPSAEQKQLAFECHL 909 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQYISIKDNGPG 411 D SL + D ++Q++LNLL NAVKFT G+V + V G G + + D GPG Sbjct: 910 DESLPRALHGDANRVQQILLNLLFNAVKFTER-GQVRLRVLPLQAGGGGIRVEVSDTGPG 968 Query: 412 IAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E + + F Q + G GLGL I + + A GG + S L +G + Sbjct: 969 MSEEQRGRLFQRFEQAEGGRTTTRHGGSGLGLAICRELAAAMGGSVGVSSALGQGACFVV 1028 Query: 471 ILPNTRVLNFIP 482 LP V P Sbjct: 1029 ELPLRWVSTPAP 1040 >gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 740 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 124/248 (50%), Gaps = 6/248 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +L+ + D RKRAEE KS FLA+MSHE+RTP+N I+ SE++E T+ N Sbjct: 199 QLKKTAAGLDHARKRAEEAERIKSAFLANMSHEIRTPMNGIIAMSELLEQGTL----NPE 254 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + I S LL +IN+ILD S+IEAG+ + I++V E + A K Sbjct: 255 QRSMTSTISSSAVALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAK 314 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 +EI + + V D +RQ +LN++ NAVKFTA G VH+ + + + + Sbjct: 315 GVEICVESVLEMPLMVMGDSARLRQCLLNVIGNAVKFTAT-GNVHIWLNRSEDGQIVVKV 373 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GIAE ++ + F Q G GLGL I+ ++ GG RS+ EG Sbjct: 374 TDTGVGIAEDKLDHIFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEG 433 Query: 466 VEVIAILP 473 LP Sbjct: 434 SVFEMRLP 441 >gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61] gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61] Length = 470 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 7/242 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K+AE + KS ++++SHELRTPL ILG +E++ + PL E ++Y+ I + + Sbjct: 235 KQAE-VDRMKSELVSTVSHELRTPLAGILGLAELLLNK---PLAPERQRKYLTAIGQEAE 290 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L+ LIN+ LD+ R+EAGR + L+ I+ + I + ++ + Sbjct: 291 RLMALINDFLDVQRMEAGRQTYRWEPVDLVPIMEKIID--AEKMGTDIHTFSVSVETKRT 348 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D + +RQ+ NL+ NAVK++ GG V + + + + ++D G GI +P Sbjct: 349 MIRGDRERLRQLFTNLVHNAVKYSPNGGAVVIRL-YEHSGCLCVDVQDEGLGIPAEALPH 407 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + + + G GLGL I + I HGG+ + S+ ++G P + Sbjct: 408 IFEKFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFPLAPLPQ 467 Query: 480 FI 481 + Sbjct: 468 EV 469 >gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI] gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 487 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 84/332 (25%), Positives = 142/332 (42%), Gaps = 8/332 (2%) Query: 149 LSISALSNFMLPYA--VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 ++ + + + L L + + I+ +L + + L+ L I Sbjct: 158 VTGAVMLSAPLAPIEGRILDLQKITLYTGIAGIILATILSLFFSRTLSRPLLNMNMIARA 217 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTP 263 + + KD++ E SLS + + E + + F+A++SHELRTP Sbjct: 218 MAGGDYSRQVEVKSKDEIGILAESLNSLSLRLQDKVAALERLDQTRREFVANVSHELRTP 277 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L+ +LG++E + ++ ++Y+ +IH L L+ E+LDLSR+EAG+ Sbjct: 278 LSIMLGYTEALIDGL--AHSDTDRQKYLNNIHEEILRLRRLVTELLDLSRMEAGQVNAEM 335 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + Q A +K +E+ + L V A+ + QV +NLL NA++ T Sbjct: 336 HETDVAAVAGRVFDKFQAVAAKKGVELRNSLPSVLHPVLANPDRLEQVFINLLDNAIRVT 395 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V +T +SI D G GI E P V F + + +G GLGL Sbjct: 396 PAGGVVEMTAYELK-NELRVSISDEGHGIPPEEQPLVWERFYKVDKSRTRTGEGTGLGLA 454 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + I+ HGG I S +G +P Sbjct: 455 IVKKIVEAHGGSVEIASMPEKGSTFSFTIPKK 486 >gi|149370174|ref|ZP_01890025.1| Signal transduction histidine kinase-like protein [unidentified eubacterium SCB49] gi|149356665|gb|EDM45221.1| Signal transduction histidine kinase-like protein [unidentified eubacterium SCB49] Length = 728 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 159/319 (49%), Gaps = 21/319 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 I G+ T + + +T L+K N L +A + S +++AE+ Sbjct: 297 FIIYTTGLGVTLIVILSLLTLSLYKINN--LKAKANNLLI-----QKNSELQAAKEKAEK 349 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 ++AK++FL+++SHELRTPL A+ G + ++ E KE++ + SG++LL+L Sbjct: 350 ASVAKAQFLSTVSHELRTPLYAVTGLTHLLLDE----NPEPKQKEHLDSLKFSGEYLLSL 405 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 IN +LDL+++EA + E+ +L +R+ I L+ AQ+KN ++ D L + Sbjct: 406 INNLLDLNKLEAKKTEVEYLTFNLEKQIRDVIDALKNSAQDKNNKVTLDFDNELPDKIVG 465 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D + Q+++NL+ N++KFT G V + V + I+DNG GI++ + T Sbjct: 466 DPIKLSQILMNLIGNSLKFT-QNGFVTIRVKKNNEDDKNINIKFEIEDNGIGISKKKRST 524 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---- 475 + SF QGS+ + G GLGL I ++I+ + S L +G + + Sbjct: 525 IFESFSQGSLQVNRKYGGTGLGLSIVKNILKLMNSDIHLESTLGQGSKFWFNITFKKHID 584 Query: 476 RVLNFIPEDNHESTQYKCY 494 R + I + +E+ + + Sbjct: 585 RNVKPISQSTNEAIDFSVF 603 >gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] Length = 935 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 18/310 (5%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----AELEVA 231 A + I+ G L + L S +++ + +D + LEV Sbjct: 212 LNADTLGQHMVINSTGELRLLQRDIANVVKRLHFSFLELREHTEQTEDDLRRTLDTLEVQ 271 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R +A N AKS FLA++SHELRTPLN+I GF ++ + G L+NE Y+ Sbjct: 272 NITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQ--GNLSNE-QSLYL 328 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I +S HLL LIN++LD S+I+AG+ EL + L + + + + ML A +K+I++ Sbjct: 329 QTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMA 388 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 + + D +Q++ NL+SNA+KFT G + V + S++ Sbjct: 389 FYYADGVPKHIIGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEHDGMDQCVLHFSVQ 447 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL---- 462 D+G G++ + + SF QG ++ G GLGL I++ +++ GQ Sbjct: 448 DSGIGLSGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAP 507 Query: 463 -REGVEVIAI 471 +G Sbjct: 508 TEKGSTFWFT 517 >gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 876 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 144/358 (40%), Gaps = 34/358 (9%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 L P + A I + H F K+ Sbjct: 264 LLGREWRTFHGAEARPEIFADMVTTIRAGHPWTGEWMMPRKDGTVFPLRAAITPVKNRAG 323 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + + E+ ++L E ++RAE + AK +FLA+MSHE+RTPLN I+GF+ + Sbjct: 324 EIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEVRTPLNGIVGFASL 383 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + P EY+ I S + L+ L +ILD +RIE+GR +L + V Sbjct: 384 LLETELTP----EQLEYVETIRTSSETLIQLTGDILDYARIESGRLKLEPQPCDPRECVE 439 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + A K +E+ ID ++ + + AD +RQVI+NL++NAVKFT G V V Sbjct: 440 NALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAVKFTPT-GEVAVD 498 Query: 393 VGWTSGR-------------------------GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 V + S++D G GIA P + F Q Sbjct: 499 VRVVASSPAPETADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAHHPKIFRPFSQV 558 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 + G GLGL I ++++ G S+L G + RV P + Sbjct: 559 DDSTTRRYGGTGLGLAICKNLVGLMNGHITFTSELGRGSRFTFTI---RVPVHTPAAD 613 >gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] Length = 389 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 136/260 (52%), Gaps = 7/260 (2%) Query: 217 CQAEKDDLIAELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + AE E AK L E R AE N K FL+++SHELRTPLNAILG+S ++ Sbjct: 133 AKEIRLRQRAEEERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGIL 192 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + + + + + I R+ + +LI ++LD+S+I GR L AI L+ ++ Sbjct: 193 QSKNL---DEAEIRRALEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEA 249 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 I L+ A KNI + +DP+ S V D + ++Q++ NLLSNAVKFT G V + + Sbjct: 250 AIDTLKPAADAKNIRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQ 309 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + I + D G GI+ +P V F Q + ++ + G+GLGL I + ++ HGG Sbjct: 310 QINSH-VEIVVADTGQGISAEFLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHGG 368 Query: 455 QFLIRSK-LREGVEVIAILP 473 S +G LP Sbjct: 369 TVQAESPGEGQGATFTVKLP 388 >gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] Length = 2370 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 6/312 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 ++ +P + Q + + + A + F + + Sbjct: 1912 RIARYPHLAEAYAQYDIDAWISIPLMVEGSAVGGITLGFAQLQEFSEEDRAFMLAVAQQC 1971 Query: 224 LIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 A ++ R AE N K FLA +SHELRTPLN ILG+++++ + Sbjct: 1972 AQAIARAHLYEAELTARNAAESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQA 2031 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ + I R+ + LI ++LD+SRI G+ L+ I+L+ ++ I ++L Sbjct: 2032 TSD---RALETIERNAKLQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLS 2088 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 AQ K+IEI + + SV D ++QVI N+LSNA+KFT G+V + + + Sbjct: 2089 AQAKSIEIQTIFEFGVGSVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQVGSQ-VQ 2147 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461 I + D G GIA +P V F Q A G+GLGL I + ++ HGG S Sbjct: 2148 ICVTDTGKGIAPEFLPYVFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGGTVQAESLG 2207 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 2208 EEQGATFTVRLP 2219 >gi|218531622|ref|YP_002422438.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523925|gb|ACK84510.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1071 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 103/361 (28%), Positives = 167/361 (46%), Gaps = 15/361 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHV 184 +E + I + ML + V+V + Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAAAHPEHGET 536 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDE 237 L +L + + + + + Q E + IA ++ + + Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKITDAKLQQ 596 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE NLAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHL LI+ +LD+SR+EAGR + + I L D + + + M++L+A+ + Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713 Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L +V A DEK +RQ++LNLLSNA+KFT G V + + + G+ +I+D G GI E + Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F +GS+ A G GLGL IA + GG+ + S++ EG L Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831 Query: 477 V 477 V Sbjct: 832 V 832 >gi|302528985|ref|ZP_07281327.1| two-component system sensor kinase [Streptomyces sp. AA4] gi|302437880|gb|EFL09696.1| two-component system sensor kinase [Streptomyces sp. AA4] Length = 1586 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 104/423 (24%), Positives = 176/423 (41%), Gaps = 28/423 (6%) Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 A A G + + IG+ V R +LV L L Sbjct: 986 CIAAYGLAQARTGLRFRLGESLIGQAAVDRRTILVNGAPPEYALVSSGLGSAPPVNVIVL 1045 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + +L L +++++ F + L + ++ I+S + L A Sbjct: 1046 PVLFQGEVLGVLELASVNEFSAVHLDLLEQLRHTIGVNVNTILSNSRTEALLTESQRLAQ 1105 Query: 198 SFFTY------ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------- 244 L +SN ++ A ++EV ++ R+ EE Sbjct: 1106 ELRARSEQLQAQQGELRRSNTELAEKAALLAQQNRDIEVKNIEIEQARQELEERAGQLTV 1165 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K+ F+A+MSHELRTPLN+ L ++++ G L E ++ I+ +G L L Sbjct: 1166 ASQYKNEFMANMSHELRTPLNSALILAKLLSENPEGNLT-EKQIQFAKTIYAAGSDLQQL 1224 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 IN+ILDL+++EAG+ +L S ++L ++V + + +K +E IDP + SV Sbjct: 1225 INDILDLAKVEAGKLDLQMSDVTLPELVNYVESLCRPLTADKGLEFAVLIDPPVPGSVHT 1284 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------------WTSGRGQYISIKDNGPG 411 DE ++QV+ NLLSNA KFT GG V + + ++ +++D G G Sbjct: 1285 DEHRLQQVLRNLLSNAAKFTDEGG-VRLHIRMADPEEVEQESLRSAAGIIAFAVEDTGIG 1343 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I E ++ + +F Q G GLGL I+Q + G+ + S +G Sbjct: 1344 IPEEKLEVIFDAFRQADGTTSRKYGGTGLGLSISQQLTELLSGELRVSSVPGKGSTFTLY 1403 Query: 472 LPN 474 LP Sbjct: 1404 LPV 1406 >gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 609 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + +F+A++SHELRTPL + + E + + E +I + + ++ Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKEITPRFIQVVQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ I+ + I +L + NI + I + Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELT-KSDNIRFVRNIPREAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG + V + ISI D G GI + ++ + Sbjct: 488 VDEDKITQVLDNIISNAIKYSPQGGTITFRVRELAD-EIIISISDEGVGIPKADLAKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLPLER 600 >gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1523 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 20/323 (6%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 +VV L + + +L +G ++ + + + L+ Sbjct: 775 MVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMELLSQLANQIGIALTQA-----ALLERER 829 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ RK AE+ AKS FLA+MSHE+RTP+NA+LG + ++ + N ++ Sbjct: 830 KRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPL----NAEQRD 885 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I SG LL LIN+ILD S++E G EL L + E + A K +E Sbjct: 886 FVETIRVSGDALLTLINDILDFSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLE 945 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404 + + P + + D +RQ++ NL+SNA+KFT G V + +S Sbjct: 946 LAVLVPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQ-GEVVIQAELMQETATHVQLRLS 1004 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + F Q + G GLGL I + + GG+ + S+ Sbjct: 1005 VRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEEGR 1064 Query: 465 GVEVIAIL-----PNTRVLNFIP 482 G L P R ++ P Sbjct: 1065 GSTFSLELTLERQPYARQISQQP 1087 >gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681] gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681] Length = 1039 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 171/448 (38%), Gaps = 41/448 (9%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL----------AVYAANLSLGKKVM 94 + +L L +A + T +W + L + + Sbjct: 239 RKKEKALLYLGCFCIAALFYILTHGEKLLVWGIPDLPYEWILKIQSFSSTLFYYFLIRYV 298 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY------KSATLLIA 148 + +I + + + L L + ++ ++ +LI Sbjct: 299 HLSTQIVMNRIVLRLYHITTALM-LGMGLFLPTLILSSFEAFILLFGVVSVGYVLLILIR 357 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + L +S +VV + V ++ ML L+ + Sbjct: 358 GLLQRTDDAALLVISIMSILMIVVTSFVYILGWGDVRGVTAYEMLIFVLAQTLLLAKRFV 417 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 S +++ + +R + K FLA+ SHELRTPL+ I+ Sbjct: 418 HSFMEVENLS---------------------RRLLTLDGLKDEFLANTSHELRTPLHGII 456 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++ + G NE K + I G+ L LIN+ILD S ++ GR L+ ++ Sbjct: 457 NIAQSMLDR-YGTQFNEPQKHNLVLIANVGRRLSYLINDILDFSNLKNGRLALNRRPANV 515 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 V + +L +K + ++ SL V ADE + Q++ NLL NAVKFT G Sbjct: 516 QAAVNSVLEVLGHTVGKKKLHFVKEWPHSLPKVDADEDRLIQILYNLLGNAVKFTEE-GE 574 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + ++ R IS+KD G GIA+ +P + F +G+ A G GLGL I + + Sbjct: 575 IVISAKA-GTREMEISVKDTGSGIAQEHLPHIFEPFNRGANAEDEGYSGTGLGLGIVRRL 633 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTR 476 + HGG + S+L +G +P + Sbjct: 634 VELHGGHIRVESRLGKGSTFYFTMPLAQ 661 Score = 61.1 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 98/329 (29%), Gaps = 67/329 (20%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + P + + + L +L TA I L + Sbjct: 752 LVITDWMMPEMSGIELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVD 811 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLA---------KSRFLASMSHELRTPLNAILGFS 271 ++L A + ++ R AEE + K FL + LN I+ Sbjct: 812 AEELKARVRTLLNM----RHSAEEAVRSEMAFLQAQIKPHFLYNA-------LNVIVSTV 860 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA--ISLI 329 ++ + E +++LS+ G ++ + L Sbjct: 861 ---------AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENTVPLS 894 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT----AI 385 + + L + I+ + Q I + NA++ A Sbjct: 895 KELELVESYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQPI---VENAIRHGVMQRAT 951 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL-PI 444 GG V V V G +S+ D+G GI + +L + S+ GL I Sbjct: 952 GGTVRVVV-QEDGTDFVVSVTDDGVGIPAERLEQLL-----SEDHVSSSV-----GLRNI 1000 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ +G I S +G V +P Sbjct: 1001 HRRLIHMYGEGLRIESNSMQGTTVSFRVP 1029 >gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 745 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 164/414 (39%), Gaps = 18/414 (4%) Query: 71 IFPMWSLITLAVY--AANLSLGKKVMNSDIKIGEVYV-WRIWLLV--GQIAIGLCWTLLT 125 W ++ + L + ++ + + + W+ Sbjct: 42 FITSWGIVACCIGWMLLAYYLNEPLIALLTGPALLGTIFATIFTAYGMPLLGRTVWSAGG 101 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 +V + + + L F + VV A + + + + Sbjct: 102 IVAVTLASFTIHEAANPELMYLVLLGGPFLTFAVGRENLQLTI-VVAATAISLMAVLLLG 160 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + Y+ L +++ + ++A K + + +A Sbjct: 161 NDFFGAPWVGKETAEKYLATGLLFMVFILIAVEMAAFGILAHTNQVK--MEASSTQARLA 218 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + AK+ FLA+MSHE+RTP+N ++G E++E + + I S LL++I Sbjct: 219 SRAKTDFLAAMSHEIRTPMNGVVGMVEILENSKLTT----EQSRIVETIRDSSTALLSII 274 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 ILD+SRIEAG+ EL ++ + + L+ A+ ++ + DP L D Sbjct: 275 ENILDMSRIEAGKLELKLQKTEVLSVFEKSADTLRHFAEAHHVTLLMNYDPDLPKYMSCD 334 Query: 365 EKGMRQVILNLLSNAVKFT-----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +RQ+ILNLLSNA+KF+ G+V +TVG++ + + D+G GI E + + Sbjct: 335 SGRLRQIILNLLSNAIKFSKRPPEDPKGQVILTVGFSDKDDLKVEVSDDGIGIGEEFLSS 394 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q + + G GLGL I ++ G ++S+ +G LP Sbjct: 395 LFDPFEQSAEVRRHEFGGSGLGLAIVSQLIEKLNGSIGVQSQRGQGTTFTVHLP 448 >gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii 37] Length = 1278 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 15/273 (5%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 AE + +E AK + E+ + KS FLA+MSHELRTPLN++L S+ + + Sbjct: 542 AEMTEKNTVIERAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNS 601 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L NE +E I+ GQ LL LIN+ILDLS++EAG+ ++ S+ +++ Sbjct: 602 QGNL-NEEQQEDARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQ 660 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---- 393 + A +K +E+ + LS ++D + + QV+ NLLSN +KFT G V + V Sbjct: 661 FKPVANKKGVELCFDKEDVLSDDFFSDPQRIEQVLRNLLSNGIKFTHH-GTVSLKVIQPG 719 Query: 394 --------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 ++ D G GI+ +V +F QG + G GLGL I+ Sbjct: 720 PSVRFDNPALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTIS 779 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + ++ GG+ ++SK EG LP R L Sbjct: 780 RELVKLMGGEIQLQSKEGEGSTFTLYLPLDRRL 812 >gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 1319 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 18/255 (7%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIEL-------------ETMGPLNNETY 287 AE E K+ FLA++SHELRTPL ++LGF+ +I + + Sbjct: 1068 AEREIEQIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIFPWVAIGDQPTQKAIQQV 1127 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + + I + L +LIN++LD+++IE+G+ E + ++S I I+ II ++KN Sbjct: 1128 RNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIILERAIISTSSLFEDKN 1187 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIK 406 + + + P L + D+ + QV++NLLSNAVKFT +G VT + I+I Sbjct: 1188 LRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS---VTCQAQQNQEYLVIAIT 1244 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E V F Q + + QG GLGL I + I+ +HGGQ + S+L +G Sbjct: 1245 DTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHHGGQIWVESQLGQGS 1304 Query: 467 EVIAILPNTRVLNFI 481 LP L Sbjct: 1305 TFFFTLPLAVSLPPS 1319 >gi|193215941|ref|YP_001997140.1| integral membrane sensor signal transduction histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089418|gb|ACF14693.1| integral membrane sensor signal transduction histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 500 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 20/358 (5%) Query: 131 TWTPEYLTIYKSATLLIALSIS--ALSNFMLPYAVFLSFFP------VVVALSTQAIMSM 182 E Y TL + S A+ + + +++ L+ A+++ Sbjct: 146 KTGDETPLAYLYVTLGCVSAASTEAMIAHSYALRILVVSLVVALLAAMLIGLAMIALLTK 205 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + F I + + E I +++ + Sbjct: 206 DLWRFVTFIQKIQGGDFSKRIHVSSSSELKALANAFNEMAAKIEHTMNLLKENEKLLR-- 263 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 F+A++SH+LRTPL +I G+ E I L+ L+ + ++Y I ++ + L Sbjct: 264 --------EFIANISHDLRTPLASIEGYMETIILKK-HLLSEKEKQQYFNTILKNTRTLN 314 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++LDLS++EA + +L S+ +++++ ++ +A NI + V+ Sbjct: 315 RLVNQLLDLSKLEARQVKLKPEPFSITELIQDVMLKFNPQATASNISLNAHFPSHTPFVF 374 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD + +V+ NL+ NA T G + V + Y+ ++D G GIA ++ + Sbjct: 375 ADLGLIDRVLQNLIGNAFNHTEENGCIDVEIEMLDEYTMYVRVQDTGKGIAPEDLKHIFD 434 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT-RVLN 479 F QG + G GLGL IA+ IM H + S L G LP RV Sbjct: 435 RFYQGDKVRSKHKSGAGLGLTIAKKIMELHHSTLDVESTLGVGTTFSFKLPVYVRVAE 492 >gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 766 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 13/278 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +LI E + + + ++ AE+ L KSRFL+ MSHE+RTP+N ++GF+ ++ Sbjct: 369 ELITEKKQIQEALIKAKEDAEQAALIKSRFLSIMSHEIRTPMNGVIGFTNLLLKN----- 423 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +E + + S Q+L+ +IN++L+L++I+AG+ EL + L ++++ + Sbjct: 424 PREDQREALNVLKFSAQNLMVIINDVLNLNKIDAGKVELENISFDLYELLQNICRSQEND 483 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A+EK++ + + D SL D + QVI NL++NA+KFTA GRV ++ Sbjct: 484 AKEKHLNLSVQFDYSLPFWFKGDPVRIGQVITNLVNNAIKFTAA-GRVSISTALVGEHEG 542 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ D G GI E + + F Q G GLGL I + ++ G Sbjct: 543 KMTIGFAVSDTGIGIPETKQEHIFELFSQAESDTTRIYGGTGLGLTITKRLLELMGSNIQ 602 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 ++S EG L + + +P + +A Sbjct: 603 LKSTPGEGSIFYFDLELEK--STLPVEETSGLDTPRHA 638 >gi|295690250|ref|YP_003593943.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432153|gb|ADG11325.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 622 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 109/482 (22%), Positives = 193/482 (40%), Gaps = 29/482 (6%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN---PIFPMWSLIT 79 + L D + V R S A T TQ PI+ +W T Sbjct: 1 MTLARGRPSIRDNPLTMALVRQASRNSVATMGVQAAAAIGVTLATQPAERPIYWVWLAAT 60 Query: 80 LAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLVGQIAIGLCWTLLTLV-EPGTWTPE 135 LAV AA + + + + + + G + W +L + P Sbjct: 61 LAVLAARVVVDRMLAAALKGGPFARRLDQIVVAFSAGLLISAALWAVLAWLRFPLDSQHT 120 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 I + L + LS L +++S + +++ + + +A L Sbjct: 121 RFVIIVVLSALAGGATGVLSPLKLTGRIYISLILLPASVALLLGPDRALGLLGVAFWLVM 180 Query: 196 ALS-----FFTYITYHLFKSNVKILSCQAEK--------DDLIAELEVAKSLSDETRKRA 242 + L N ++ A + DL A + + + +RA Sbjct: 181 LTGHRNNHALLVDSIQLRDQNRDLVEALARRSRDLNSLNQDLEARVALRTRQLQDATERA 240 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKSRFLA++SHE+RTPLNAILG +++ + N+ +E + ++ + + L Sbjct: 241 QSANEAKSRFLATVSHEMRTPLNAILGLGQILARSAL----NKKQREQVLEMKGAARRLR 296 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +I+++LDL +++ G EL L + + + + A+ + + + +++P L Sbjct: 297 MMIDDVLDLCQLDDGELELKPRPFHLTALAQSLDNLHRPTAEVRGLRLTMQLEPGLGEAR 356 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTV 420 D +RQVI L+ NA+KFT GG V +G I + D G G+A ++ + Sbjct: 357 LGDVDRLRQVISVLIDNALKFTQEGG---VDCRIHGAGDDLRIEVSDTGDGVAAEKMAVI 413 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + K A G+GLGL + Q ++A GG S+ +G +P + Sbjct: 414 FEHFSQIDDSTKRAAGGIGLGLALCQGLVAKMGGDMSASSQPGQGSTFTLRIPCPAIAEA 473 Query: 481 IP 482 P Sbjct: 474 PP 475 >gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1175 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/304 (27%), Positives = 141/304 (46%), Gaps = 26/304 (8%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + LA + S+F ++ + A L+ Sbjct: 757 PWWRSLSGLLVLASIALLLTSWFAWLYRRRLQ------------------RRHAYQLALH 798 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE+ + AK+RFLA++ HE+RTP+ +LG SE++ + P + Y I + Sbjct: 799 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDP----QQRGYTQSIRHA 854 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-P 356 G+HLL+L+N+ LDL+RIE+GR EL +L ++++ ++ A +K + P Sbjct: 855 GEHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTLDNQLP 914 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415 D +RQ++LNLLSNAVKFT+ G + + R + ++D GPGI++ Sbjct: 915 PGLQATGDAMRVRQILLNLLSNAVKFTSR-GTITLHARSDGELRALHFEVRDTGPGISQE 973 Query: 416 EIPTVLTSFGQGSIAIKSA-EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q A +A G GLGL I + + G+ + S+L G LP Sbjct: 974 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1033 Query: 475 TRVL 478 V+ Sbjct: 1034 PLVV 1037 >gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 583 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + ++ R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 189 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 244 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 245 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 304 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 305 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 361 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 362 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 417 Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 S+ +G A+LP ++ P + + + Sbjct: 418 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 449 >gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 842 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + E +L + ++ AE+ + AK+ FLA+MSHE+RTP+N Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S+++ + + ++ + I S LL +IN+ILDLSR+EAG+ E+S Sbjct: 480 IIGMSDILAESPL----SAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 +L V + +L+ + +EK + Q L V D+ +RQ+++NLLSNAVKFT Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFT-Q 594 Query: 386 GGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V + V +I + D G GI+E + V F Q A G GLGL Sbjct: 595 YGSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLT 654 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I+ + GG + S +G + Sbjct: 655 ISNILAQRMGGGISLNSNEGQGSCFRLEI 683 >gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] Length = 966 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 14/295 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSD---ETRKRAEEENLAKSRFLASM 256 L + + E+ L + R+ AE+ + AKS FLA+M Sbjct: 418 AKAKRELEEHKGHLEELVTERTHQLQDANSRLNQEVENHARARQEAEQASRAKSAFLATM 477 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+N +LG + +++ + + Y+ I+RSG LL ++N++LD S+IEA Sbjct: 478 SHEIRTPMNGVLGTARLLKDTGL----DRQQGHYVDVINRSGTGLLAILNDVLDYSKIEA 533 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNL 375 G E+ +L +V + +L RAQEK++++ I+ + W D + QV+ NL Sbjct: 534 GHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYFIESDVDKFWFGDMTRIGQVLNNL 593 Query: 376 LSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 + NA+KFT G ++V + D G GI+E E T+ +F Q S + S Sbjct: 594 VGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVGISEQEQQTLFDAFTQASGGLSSK 653 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ ++ GG+ + S++ EG +P + HE++ Sbjct: 654 -GGTGLGLAISKRLVEAMGGEIHLESEIGEGSRFWFSVPLQTGQEV---EEHETS 704 >gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6] Length = 717 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 20/366 (5%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL---STQAI 179 L L + + P L + ++ + + ++ L F V + L + Sbjct: 355 ALYLGQVFSNLPTGLALLDINGKVLRSNPAWDLHWGLHGVARHETFHVTLDLIEHLLPRL 414 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 H L M T + + + L +D ++SD TR Sbjct: 415 QDPHKLTTFFEQMQRTPGNDLLTTVHLMNPRQDLELRSVPTRDSKDRITGRLWAVSDVTR 474 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E + K+ F++ +SHELRTPL +ILG++E++ P E +++I + + Sbjct: 475 ER--EADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAP---EERQQFITTVFNEAE 529 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+ ++L +SRIEAG+ +L+ ISL +IV E L + I + Sbjct: 530 RLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSL--IKHRLLIDITGEIP 587 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDNG 409 ++AD ++Q+I NLL+NA+K++ GG + +T+ G+ +S++D G Sbjct: 588 PIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHPLGQWIVVSVRDEG 647 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+A ++P + F + G GLGL I+++++ HGG+ + S L G Sbjct: 648 IGMAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRIWVTSTLGRGSRFF 707 Query: 470 AILPNT 475 LP Sbjct: 708 FTLPVA 713 >gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 812 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 106/281 (37%), Positives = 155/281 (55%), Gaps = 9/281 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-------ETRKRAEEENLAKSRFLA 254 L +++++ + + A LE E ++RAEE N KS+FLA Sbjct: 481 RHEQRLVDNDLRLTAYVVDLKRSQAALEQQARELADLAQKYAEEKRRAEEANQTKSKFLA 540 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAI+GFSEV+ GPL + Y+EY DI SG +LL++IN++LD+S+I Sbjct: 541 NMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQDILTSGNYLLDVINDVLDMSKI 600 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGR +L + L + V E + A K + + +ID ++ V AD + M+Q+++N Sbjct: 601 EAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDSRIDGAIPIV-ADRRAMKQILVN 659 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT GGR+ V G ++I D G GI + + + F Q + + Sbjct: 660 LLSNAVKFTPDGGRIVVR-SRIIGDRVMVTIADTGIGIPKEALARLGCPFEQVESQLTKS 718 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+S++ H G +RS+L G V LP Sbjct: 719 YHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINLPCA 759 >gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira platensis NIES-39] Length = 730 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 135/258 (52%), Gaps = 13/258 (5%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ETR A + KSRFLA MSHE+RTP++ +LG E++ + P K+Y I Sbjct: 50 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTP----QQKDYTQTI 105 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +RS +HLL +INEILDLS++EAG L L D + + +L ++A++K +E+ + Sbjct: 106 YRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILL 165 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNG 409 +P++ + D ++QV++NL++NA+KFT G + + + Y SI+D G Sbjct: 166 EPNIPRYLKGDGMRLQQVLINLVNNAIKFT-QSGHIIIRLTPRFINQDQINIYFSIEDTG 224 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI++ P + F S A G GLGL I Q ++ GG+ + S+ +G Sbjct: 225 LGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQEGDGSIFW 284 Query: 470 AI---LPNTRVLNFIPED 484 LP+ P++ Sbjct: 285 FTANFLPSELSEIPAPKE 302 >gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624] gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624] Length = 935 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%) Query: 200 FTYITYHLFKSNVKI----LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + L S +++ + + + LEV + R +A N AKS FLA+ Sbjct: 237 IASVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLAN 296 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+ Sbjct: 297 ISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKID 353 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 AG+ EL + L + + + + ML A +K+I + ++ V D +Q++ N Sbjct: 354 AGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGDALRFKQILTN 413 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L+SNA+KFT G + V V + S++D+G G++ + + SF QG + Sbjct: 414 LISNAIKFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDAS 472 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDN 485 + G GLGL I++ ++ GQ +G F ++ Sbjct: 473 VTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEE 526 Query: 486 HE 487 HE Sbjct: 527 HE 528 >gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 775 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 105/269 (39%), Positives = 150/269 (55%), Gaps = 2/269 (0%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + + QA + EL + + RAE+ N AKS+FLA+MSHELRTPLN Sbjct: 496 RLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRAEDANRAKSKFLANMSHELRTPLN 555 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFSE++ G L +E Y EY DI SGQ+LL +IN++LD+S+IEAGR +L Sbjct: 556 AIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVINDVLDMSKIEAGRMKLDMEP 615 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L + E + ++ R +K + +ID + ++ AD + ++Q+I+NLLSNAVKFT Sbjct: 616 LDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADHRAVKQIIVNLLSNAVKFTPD 674 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GGRV ++I D G GIA + + F Q + G GLGL IA Sbjct: 675 GGRVMAR-SQVFANSVALTIADTGIGIAPHSLRKLGKPFEQVESQLTKTYAGSGLGLAIA 733 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 +S++ HGG +RSK G V LP Sbjct: 734 KSLVNLHGGSMRLRSKPGTGTVVRVTLPR 762 >gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 810 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 9/270 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + N+ + + LI + + + AE + AKS FLA+MSHE+RT Sbjct: 390 RMLGVNLDVTRDVHLHEKLIEANATLLQRNNDLTDAKVAAESADRAKSEFLANMSHEIRT 449 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ILG +E++ +G +EY+ I S LL +IN+ILDLSR+EAGR +S Sbjct: 450 PMNGILGMAELMSEADLGA----EEREYLTTIQDSSNALLKIINDILDLSRLEAGRLAIS 505 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 L + V + +L+ +A+EK + + +L V+ D+ +RQ+++NL+ NAVK Sbjct: 506 PVDFDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLPEQVYGDDGRLRQILVNLIGNAVK 565 Query: 382 FTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 FT+ GG V VT I+++D G GI++ + + F Q AI A G GL Sbjct: 566 FTSEGGVDVKVTCDEQDPYSLEIAVEDTGIGISDSQAEYIFDRFAQADAAITRAFGGTGL 625 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GL I+ + GG + EG Sbjct: 626 GLTISSILAKRMGGGIELCRAREEGSCFRL 655 >gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +KS FLA+MSHE+RTP+NAI+G ++ P +Y+ I S LL LI Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLI 468 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEAG+ + + L +I+ + ++ +A EK +E+ +DP++ + D Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGD 528 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTV 420 + QV++NL +NA+KFT G V ++ ++++D G G++ +I + Sbjct: 529 PHRLGQVLINLTANAIKFTET-GEVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERI 587 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q A G GLGL IA ++ GG+ + S G Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638 >gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 865 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 12/269 (4%) Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 I+E ++A+ D RK AE N K FLA +SHELRTPLN ILG+S+++ Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + I R+ LI ++LD+SRI G+ L+ +SL ++ I Sbjct: 523 QFDAATTD---RALETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAID 579 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++L A+ K I+I DP+L V D ++QV+ NLLSNAVKFT+ GG V + + + Sbjct: 580 TVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVN 639 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + Q I + D G GI +P V F Q G+GLGL I + ++ HGG Sbjct: 640 DQAQ-IQVIDTGKGITPEFLPYVFDYFRQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQ 698 Query: 458 IRSK-LREGVEVIAILPNTRVLNFIPEDN 485 +S G LP + + ++ Sbjct: 699 AKSPGDGLGATFTVNLPLSPKNEAMNHED 727 >gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329] Length = 878 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 350 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 409 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + DI S LL L+N+ILDLS+IE+GR ELS + ++V + +I+ Sbjct: 410 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 465 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D ++ V D+ ++Q+I NL+SNAVKFT G + V V + Sbjct: 466 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 524 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 IKD+G GI ++ T+ F Q + G GLGL I + +++ G Sbjct: 525 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 584 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S G + Sbjct: 585 GKLVATSTKGVGTCFGFSI 603 >gi|284053654|ref|ZP_06383864.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 800 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 139/326 (42%), Gaps = 19/326 (5%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 +AL + + + + + L + D+L Sbjct: 354 TIALCLIFFLIAIFIGFRTSLWIVKPILKLNQSAKKLASGEWEETPNLDRTDELGELANS 413 Query: 231 AKSLSDETRK----------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 ++ + ++ + + + K+ FLA+ SHELRTPLN +G +E + G Sbjct: 414 FNQMARQLKESFVNLEAKNAQLQHLDKLKNEFLANTSHELRTPLNGTIGIAESMLDGATG 473 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L E ++ + I ++G+ L NLIN+ILD S++ EL +I L ++V + + Q Sbjct: 474 SLT-EIQRKNLLTIAQTGRRLANLINDILDFSKLRHNHIELQLKSIRLRELVEVVLTLSQ 532 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------- 393 + K +EI I +L ADE ++Q++ NL+ NA+KFT G + ++ Sbjct: 533 PLIKYKQLEIINTISDNLPPAMADENRLQQILHNLIGNAIKFTNA-GTIEISAVELDSHG 591 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 I+I D G GI E +I V SF Q + G GLGL + + ++ HG Sbjct: 592 ETEKPEWIEITISDTGIGIQEDKIDRVFESFEQADGSTARQYGGTGLGLAVTKKLVELHG 651 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLN 479 G+ + S++ G LP Sbjct: 652 GKIWLESEIGVGSRFHFSLPIAESEP 677 >gi|283850550|ref|ZP_06367838.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283574121|gb|EFC22093.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 536 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 146/327 (44%), Gaps = 11/327 (3%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 V ++ V ++ LS + L +S + + + +L + Sbjct: 80 LAVPSIFLTGQGDREVDLKAMEAGATDYLSKSMLNAHLLERSVRYAIRNKRAELELEERV 139 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + + + AE N AKS FLA+MSHE+RTPLN ILG ++++ + + Sbjct: 140 RDRTAQLQKAVEEAEAANRAKSDFLANMSHEIRTPLNGILGMLQLLQTT----DADPEQR 195 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EYI + +S Q L L+ +ILDLSRIEAGR + E+A I A+ K + Sbjct: 196 EYITNAIKSSQRLTRLLADILDLSRIEAGRLPIVETAFEFKSQQEAVIETFDQAARGKGL 255 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT-----VGWTSGRGQY 402 + +D + + + DE +RQ++ NL+ NAVKF+A GRV VT + Sbjct: 256 ALDFLVDDRMPAALIGDETRLRQILFNLVGNAVKFSAY-GRVAVTATPMHLRDDGSLRVL 314 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++ D G GI + + + F Q A QG GLGL I + +++ GG+ I S Sbjct: 315 FTVTDTGIGIPDHLLADIFEPFSQVEGAYSRRFQGAGLGLAIVRRLVSLLGGELDIDSTE 374 Query: 463 REGVEVIAILPNTRVLNFIPEDNHEST 489 G + LP R + +T Sbjct: 375 GRGTAIYLTLPFRRPRDAPARSEGPAT 401 >gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 862 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 153/406 (37%), Gaps = 14/406 (3%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + I +TL PG A + LS+ Sbjct: 44 LRRYREANAQRRAVLDAASRMSIIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLH 103 Query: 153 ALSNFMLPYAVFLSFFPVVVALST----QAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + A + + ++ + T L IT Sbjct: 104 TTEDLERHRASLKATLTSSTGMEIFEHYTSLQQHDTGEWQYICSDGTLLPVSLSITSIYN 163 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ D + + + ++ AE+ + + FLA MSHE+RTP+NAI Sbjct: 164 AEGMREGYLFTAMD--LTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAIT 221 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ + N ++Y+ I S LL +IN+ILD S+I+AGR EL E SL Sbjct: 222 GMAYLLGSTEL----NHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSL 277 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 I+ + ++ RA+EK ++I I P + S+ D + Q+ILNL SNAVKFT+ G Sbjct: 278 QQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGE 337 Query: 388 ---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V + + D G GI + + +F Q +I G GLGL I Sbjct: 338 VALTVTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAI 397 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + + GG+ + S +G R P + + Sbjct: 398 CKELTQMMGGEIWVESIPDQGSSFFFTACFRRNEQAEPGPDQDYPD 443 >gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] Length = 620 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 32/321 (9%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 +++A++ + + +S +KI AE + Sbjct: 85 FTVTIILAIALGIFSWRRWRE-----------CEYELTYRKSIQSQLKIAKDIAETEK-- 131 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + E+A+ ++ +++AE N AKS FLASMSHELRTPLN ILG+++++ N Sbjct: 132 KQAEIARKEAEVAQEKAEIANQAKSEFLASMSHELRTPLNGILGYAQILRR---DKSLNN 188 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I + +SG+HLL LIN+ILDLS+IEA + EL + + E + M+Q+RA Sbjct: 189 QQQYAIHTMQKSGEHLLTLINDILDLSKIEAQKMELHQQDFHFSHFLTEIVDMIQVRAMP 248 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K +E + +L +V DE +RQ+++NLL NAVKFT G+V V + Sbjct: 249 KTLEFQHDFEANLPIAVNGDETRLRQILVNLLGNAVKFTER-GKVTFKVILIGEKEKKIE 307 Query: 401 ---------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I+D GPGIA + T+ F Q +G GLGLP++Q + Sbjct: 308 NRESSPLPNIRFQIEDTGPGIAPEFLKTIFEPFQQVGTER-YITEGTGLGLPLSQKFVEM 366 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 + S + EG L Sbjct: 367 MDSSLQVTSTVGEGSIFWFEL 387 >gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] Length = 869 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 8/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SNFTE 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++I I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEVTQFIATINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + + D ++QV+ NL++NA KFT G + I Sbjct: 741 AGVELVLRMPAGDKKYLTTDNVRLQQVVNNLINNAAKFTGS-GFITFGYEEDEEPGYTRI 799 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI+E I + F + QG GLGL I Q+I+ G + S++ Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLKGTISVTSEVG 855 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 856 KGTRFTVRLP 865 >gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 569 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 K+ L +E+ R+ +E N AKS FLA MSHELRTPLN++LG +V++ M Sbjct: 182 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 241 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + + S LL +I++ILDLS+IE+G + LS I++ D V + Q Sbjct: 242 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 297 Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 L A K + I I+ W D + QV+ NL+ NAVKFT G++ + V Sbjct: 298 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 355 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G GI + +I ++ T+F Q +I G GLGL I + ++ G + Sbjct: 356 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 415 Query: 460 SKLREGVEVIAILPNT 475 S+ +G + +P Sbjct: 416 SQFGKGSTFVVKIPVK 431 >gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1194 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 16/381 (4%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + ++ + ++ +LT + +I + ++++ + Sbjct: 377 LNIIVLPVLFETEVIAVIEIASFHRFSQLHLTFIDQFSEVIGVFLNSIYASAQTQNLLDE 436 Query: 167 FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L S Q + + +L L + N ++ + Sbjct: 437 SVALAAELRQSNQLLEQQTQDLENSEFLLKQQQQELQQSNEELQQLNEELEEKAELLELQ 496 Query: 225 IAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+ ++ R ++AE+ + KS FLA+MSHELRTPLN++L ++++ Sbjct: 497 NNEVARKNQEIEKARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADN 556 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + G L+N+ EY I+ +G LL LIN+ILDL++IE+G + I D+ Sbjct: 557 SSGNLSNKQV-EYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKR 615 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 Q AQ+K + + D L ++ +D K ++Q++ NLL+NA KFT GG V++ +G Sbjct: 616 TFQQVAQDKGLSFSIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGG-VNLRIGLD 674 Query: 396 ---TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 T+ +I D G GI + + + +F Q G GLGL I++ + Sbjct: 675 QINTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQML 734 Query: 453 GGQFLIRSKLREGVEVIAILP 473 GG+ + S+ +G LP Sbjct: 735 GGRLGLVSQPGQGSTFTLYLP 755 >gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 869 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 854 VGKGTRFTVRLP 865 >gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii L2-6] Length = 978 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 140/265 (52%), Gaps = 9/265 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + AE N AKS FL++MSH++RTP+NAI+GF+ + + E Sbjct: 445 TADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTLAISNI---DDKE 501 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+Y+ S HLL+LIN++LD+SRIE+G+ L E ++L +++ + ++ + Sbjct: 502 RVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKTIVSGQIYA 561 Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 K +E++ +D + V+ D+ + Q++LNLLSNA+KFT GG V V V +G+ + Sbjct: 562 KQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGQVRGCG 621 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IKDNG G++ + F + + S QG GLG+ I ++I+ GG ++ Sbjct: 622 QYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQ 681 Query: 460 SKLREGVEVIAILPNTRVLNFIPED 484 + +G E I +P P + Sbjct: 682 TAQGKGSEFIIRVPLRVQAEHRPVE 706 >gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 869 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 854 VGKGTRFTVRLP 865 >gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 862 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 616 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 673 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 674 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 733 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 734 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 790 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 791 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 846 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 847 VGKGTRFTVRLP 858 >gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 789 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 543 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 600 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 601 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 660 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 661 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 717 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 718 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 773 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 774 VGKGTRFTVRLP 785 >gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 869 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 854 VGKGTRFTVRLP 865 >gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 852 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 158/330 (47%), Gaps = 26/330 (7%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + +A + L I+L + + + L + + Q E Sbjct: 291 LALLAEMSQQEAFLPARRLAITLTIVGLGSAAILLLGVNRLVR-QLSRSRLQIESYS--- 346 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE-----TMGP 281 ++T A N AKS FLA+MSHELRTPLNAILGF+++++ + Sbjct: 347 ------QQLEKTALAANTANKAKSEFLANMSHELRTPLNAILGFTQLMQSDHANTTYFQK 400 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + Y Y+G I RSG HLL LIN++L +S+IEAGR L + L ++R ML + Sbjct: 401 ERSSDYNNYLGIISRSGGHLLTLINDVLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSM 460 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 RA+ K I + ++D ++ V DE +RQV++NL+ NA+KFT G V ++V + Sbjct: 461 RAEAKAITLSVQVDQAVPQFVKTDEAKLRQVLVNLVGNAIKFTPT-GSVTLSVSCENIPS 519 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Y SI D G GI+ ++ + F Q S A QG GLGL I+Q + GG+ Sbjct: 520 LYRLNFSIVDTGVGISAEDLSCLFDPFFQASRTRT-AHQGTGLGLAISQRFVQMMGGEIN 578 Query: 458 IRSKLREGVEVIAIL---PNTRVLNFIPED 484 + S + +G + P L+ +P Sbjct: 579 VESIVDQGSTFSFSIQAQPAE--LDELPTA 606 >gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 869 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 681 EEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 741 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 797 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 798 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 853 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 854 VGKGTRFTVRLP 865 >gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 885 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 487 ITELEIIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTP 602 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ Sbjct: 603 Q-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 658 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFG 714 Query: 464 EGVEVIAILP 473 +G LP Sbjct: 715 KGTTFTFTLP 724 >gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] Length = 1125 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 15/262 (5%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ + E + + I SG+ Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N++LD+S+IEAG+ EL +L ++ + + +++ A + + + +IDP L Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPV 698 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410 V D +RQV+ NLL+NAVKFT G V +T + I D G Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I ++ GG + S+ G Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817 Query: 471 ILPNTRVLNFIPEDNHESTQYK 492 L R P + ++ Sbjct: 818 TLALPRA-TTPPAAQPAISPHR 838 >gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 509 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPL--NNETYKEYIGDIHRSGQHLLNLINEIL 309 FLA++SHELRTPLNAI+G+SE++ E + +++ + I RSG+ LL LIN+IL Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IE G+ L +++ + + + +E+N ++ + SL +++ D R Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 Q+ NLLSNA KFT G + V I+++D G G+ E + V +F Q Sbjct: 395 QIFTNLLSNACKFTNA-GYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQA 453 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + G GLGL I + GG + S+ G +LP Sbjct: 454 DASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499 >gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] Length = 858 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 24/362 (6%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH----VLDISLAGMLA 194 ++ A I + A + A + + V + +A A Sbjct: 362 LFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDKLVPHLRMAAQGA 421 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLA 248 T I +F+ N+ + + +I + + A+ S+ R+ AE+ A Sbjct: 422 TLTGVNVPIGDKVFRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQA 481 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ FLA MSHE+RTP+N ILG +++++ E K I + SG+HLL ++N+I Sbjct: 482 RADFLAKMSHEIRTPINGILGVAQLLKDSV----EAEEQKNQIDVLRHSGEHLLAVLNDI 537 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367 LD S+IE G++ + + S D +R + + + K +E+ + ++ D+ Sbjct: 538 LDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENRLDGNVEIFTDQVR 597 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPTVLT 422 + Q++ NL+SNAVKFT G V + + I D G GI ++ + Sbjct: 598 LNQILFNLVSNAVKFTPS-GCVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFE 656 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLN 479 F Q G GLGL I ++++ G +RS+ +G + LP RVL Sbjct: 657 PFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKDRERVLA 716 Query: 480 FI 481 + Sbjct: 717 PL 718 >gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205] gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205] Length = 936 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 152/366 (41%), Gaps = 24/366 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182 L+ P L YK L+ + L + VF P+ + Q + + Sbjct: 156 LMVELDNHPLELARYKILLSLVVTGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236 + + I + + + L + + +L + Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R +A N +KS FLA++SHELRTPLN+I GF ++ + + Y+ I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S HLL LIN++LD S+I+AG+ EL + L + + + + ML A +K+I + Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 ++ V D +Q++ NL+SNA+KFT G + V V + S++D+G Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDEIGQCLLHFSVQDSGI 451 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465 G++ + + SF QG ++ G GLGL I++ ++ G +G Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKG 511 Query: 466 VEVIAI 471 Sbjct: 512 STFWFT 517 >gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] Length = 1125 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 15/262 (5%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ + E + + I SG+ Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N++LD+S+IEAG+ EL +L ++ + + +++ A + + + +IDP L + Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410 V D +RQV+ NLL+NAVKFT G V +T + I D G Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I ++ GG + S+ G Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817 Query: 471 ILPNTRVLNFIPEDNHESTQYK 492 L R P + ++ Sbjct: 818 TLALPRA-TTPPAAQPAISPHR 838 >gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 934 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 10/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++ + + ++ + + + + A+ N AKS FLA+MSHELRTPLN I Sbjct: 373 IRNIHNQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHELRTPLNGI 432 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG ++++E +KE + + SG HLL+L+N+ILD+S+IE G+ EL + + Sbjct: 433 LGMAQILESSV----TQAQHKEQLSVLLESGNHLLSLLNDILDISKIEEGKLELEDIDFA 488 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 + ++ I EK I+ PS S D+ +RQ+I NLL NAVKFT G Sbjct: 489 IDELCSPIISTYSAICNEKGIQFKLNNQLPSGKSFRGDKSRIRQLIFNLLGNAVKFTERG 548 Query: 387 GRVHV-----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V + S I + D G GI + T+ F Q + G GLG Sbjct: 549 SVELVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEASTTRQFGGTGLG 608 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 L I + + GG + S+L +G + Sbjct: 609 LAIVKKLSNLMGGDAYVSSELGKGSKFTVT 638 >gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] Length = 609 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + +F+A++SHELRTPL + + E + + E +I + + ++ Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKEITPRFIQVVQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ I+ + I +L + NI + I + Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELT-KSDNIRFVRNIPREAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG + V + ISI D G GI + ++ + Sbjct: 488 VDEDKITQVLDNIISNAIKYSPQGGTITFRVRELAD-EIIISISDEGVGIPKADLAKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLPLER 600 >gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1031 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E AE N AK+ FLA+MSH+ RTP+NAI GF ++ + + KE Sbjct: 506 RRNHQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGF-NLLIDK--HAEEPDKVKE 562 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I + Q+LL+++N++LD+S+IE+G+ L + + ++ E ++ +A+ KN E Sbjct: 563 YTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINSVISFQAKNKNQE 622 Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYI 403 KI+ + D++ + ++++N+L NA+K+T GGR+ T+ + + Sbjct: 623 YIVKIEDMQHDIFMGDKQRINEILMNILGNAIKYTPEGGRIEFTINESPSSSEGFQNVTF 682 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +IKDNG G+ + +F + QG GLG+ I +S++ GG + S+ Sbjct: 683 TIKDNGIGMKPEYKDKIFDAFSREEKGATKTIQGTGLGMAITKSLVELMGGTIRVDSEEG 742 Query: 464 EGVEVIAILPNTRV 477 +G I L V Sbjct: 743 KGSTFIVNLRLKAV 756 >gi|237644063|emb|CAY85453.1| histidine kinase 1 [Claviceps purpurea] Length = 1335 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 139/268 (51%), Gaps = 14/268 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 691 EMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 750 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 751 LTLDTDLTQY----QREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTV 806 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 807 FNALKTLAVKANEKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSL 865 Query: 392 TVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 T+ + + ++D G GIA+ ++ + +F Q ++ G GLGL Sbjct: 866 TIKERANQQDVGGGEYSIEFIVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLS 925 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ ++ GG + S+ +G + Sbjct: 926 ISKRLVNLMGGDLWVLSEAGKGSQFHFT 953 >gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 882 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + DI S LL L+N+ILDLS+IE+GR ELS + ++V + +I+ Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D ++ V D+ ++Q+I NL+SNAVKFT G + V V + Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 528 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 IKD+G GI ++ T+ F Q + G GLGL I + +++ G Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S G + Sbjct: 589 GKLVATSTKGVGTCFGFSI 607 >gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] Length = 888 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 6/317 (1%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 A F + + I +L + + Sbjct: 439 LAAFGRSLNLSFYGQSWRIHWRPMLSEFSRIFAWQITLVIAIASVAVLLIQFIAFRTGTL 498 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + E+E + ++ AE+ +AKS+FLA+MSHE+RTPLNAI+GF+E+ + E+ Sbjct: 499 TEVIQEEVERKTNDLTNAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDESNL 558 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 T + ++ I S + LL L+N++LD S++EAG+ EL + SL ++ + + + Sbjct: 559 M----TIQSHLKGISSSSEALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIFE 614 Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSG 398 +A+ + + +D P+ + +DE ++Q+++NL SNA+KFT G V + V Sbjct: 615 TQARARGLSFRIDVDCPANKDIVSDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQE 674 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + +KD G G+ E E + F Q +I G GLGL I ++ GQ ++ Sbjct: 675 TQLMLVVKDTGIGMTESERARIFDQFTQADSSITRHYGGTGLGLSITMTLTELLDGQVMV 734 Query: 459 RSKLREGVEVIAILPNT 475 S+ G + LP + Sbjct: 735 ESEQGVGSQFTIRLPVS 751 >gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 623 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 1/228 (0%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +K+RFLA++SHELRTPLNAI+GFSE++ + P + +EY I SG HLL ++N Sbjct: 357 ASKTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVN 416 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ILD+S+IE+G ++ SL ++ +C M+QL+A + + + + + + AD++ Sbjct: 417 TILDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKR 476 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +Q++LNLLSNAVKFT G+V + + G IS+ D+G GIA ++ + F Q Sbjct: 477 ACKQILLNLLSNAVKFTPANGKVKIRLAP-EGNHLGISVIDSGIGIAPADLARLGDPFFQ 535 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 S + +G GLGL + + ++ HGG + S R+G V LP Sbjct: 536 ASASHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLPL 583 >gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1210 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 144/295 (48%), Gaps = 34/295 (11%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 I + + A + + AE N AKS FLA+MSHELRTPLN ILGF++V+ Sbjct: 691 ALRDITKRKQADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSR---D 747 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P +E + I++SG HLL+LIN++LDLS+IEAG + ES LI ++R M Q Sbjct: 748 PAITPEEQENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQ 807 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +A+ K +++ I + + AD +RQV++NLLSNA+KFT G +++ V Sbjct: 808 HKARAKGLQLHLNIAADVPHYIQADSNKLRQVLINLLSNAIKFT-QNGSINLRVALLKAE 866 Query: 400 G----------------------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 G + + D G GIA E+ ++ +F Q A Sbjct: 867 GNDHGSDAEDMITPPSSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTH-AG 925 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 K A +G GLGL I++ + GG + S+L +G +P E H Sbjct: 926 KVANEGTGLGLAISRKFVQLMGGDIQVSSQLNQGSTFSFEIPVHLADASDMEPIH 980 >gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1088 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 163/317 (51%), Gaps = 9/317 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 A+ + S + + + L+ FT + + L A + E A+ Sbjct: 635 AVLDARLKSGISVAVKGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAE 694 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R++AE + AK+ FL+ MSHELRTPLNAILGF++++E ET+GP + E + Sbjct: 695 ESIRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGP----SLAESVE 750 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + R+G+HLL+LINE+LD+SRI+AGR+ LS I + + E I +Q A I + Sbjct: 751 HVSRAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTL 810 Query: 353 KI---DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + V AD + + QV+ N+LSNAVK+ I GRV V+ G I+I D G Sbjct: 811 EPATAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVSY-RVDGPRIRITIADTG 869 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI ++ + F + A + +G G+GL +++ I+ G+ + S++ EG Sbjct: 870 RGIEPEKLSRLFLPFERL-GAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFW 928 Query: 470 AILPNTRVLNFIPEDNH 486 LP ++ + E + Sbjct: 929 LTLPRADEISPMEEPSP 945 >gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 577 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 154/343 (44%), Gaps = 8/343 (2%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLA 194 + + +I L++S + + L + + + LA ++ Sbjct: 195 FLTLVVSAVIGLTLSGNIARRIRTLRDATVAVAQGDLDQRVALRGSDELVLLANNFNLMV 254 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +L + L Q + D + + + A+ + + AE + AKS FLA Sbjct: 255 ASLRQQRVLLEERNAELSASLEAQRKLMDDLVQRKQAEEAAHRAQAAAEAASHAKSMFLA 314 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAILG+ +++ LE +E + + I +G+HLL +I+ ILD S+I Sbjct: 315 TMSHELRTPLNAILGYVQLLHLEAHMRGRSEMLPD-LERIRSAGKHLLTIISNILDFSKI 373 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E G+ + + S+ + RE I ++ A+ + + P + +D +RQ++ N Sbjct: 374 EQGKMNVEINPFSVDTVAREVIGIIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQILFN 433 Query: 375 LLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 LLSNAVKFT G V +TV G S+ D G GIA ++ + F Q Sbjct: 434 LLSNAVKFTEE-GTVTLTVERERHPDGDWVQFSVADTGIGIAPEQMAHLFQPFYQVHQNR 492 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL +++ + GG + S++ G LP Sbjct: 493 SRNYGGTGLGLALSRQLCRLLGGDIRVTSEVGRGSVFTVRLPA 535 >gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 570 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 88/422 (20%), Positives = 169/422 (40%), Gaps = 27/422 (6%) Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLV 127 + ++ ++ + + + V + + + + Sbjct: 5 SERLLTVFCILAGLSGLCVNIINTRFL-----PDYAAEVGTGFAVSALLL-----IAPYL 54 Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 G T++ L + +L N L L P V+ +S ++ + Sbjct: 55 INGRSNFNLRVRVIGLTVVGVLGLLSLINGNLTNVCNLGLIPAVLTFCLVLGVSDGLMIV 114 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV--------AKSLSDETR 239 + + A F + S +L+ + A + Sbjct: 115 LFSIGVYLATYFMSRAGGAAPSSLETLLAGLILSQIFVYVSAAFFRFNMMAAVKALAAEK 174 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +AE+ N AKS+FLA+MSHE+RTPLN +LG + V+ L + +E ++ + I SG Sbjct: 175 AKAEQANQAKSQFLANMSHEIRTPLNGVLGMTAVLALSKL----DERQRKAVEVIRMSGD 230 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL+ +N+ILDL++I+AG+ ++ L D+ + + +A++ + + + +S Sbjct: 231 HLLSTLNDILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVS 290 Query: 360 SV---WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEG 415 + D + Q++ NL+SNA+KFT GG V ++ + ++D G G+ Sbjct: 291 AHSLRVGDPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVD 349 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ V F Q + G GLGL I + ++ G+ + S+ G LP Sbjct: 350 QLERVFMPFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLPFR 409 Query: 476 RV 477 V Sbjct: 410 PV 411 >gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 676 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 R AEE + KS FLA+MSHE+RTPLNAI+G S+++ + +E + + Sbjct: 278 LIRARVEAEEASRMKSAFLANMSHEIRTPLNAIMGLSQLLLKTG----PSPQQRECLETM 333 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+ LL ++N++LD SRIE GR E+ + L ++ E ++ A E+ + + + Sbjct: 334 RSAGEGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIER 393 Query: 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------GWTSGRGQYISIKD 407 DP L V D ++Q++LNLLSNA+KFT G V + ++D Sbjct: 394 DPKLPRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRD 453 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREGV 466 GPGI E + F Q A+ G GLGL I+ ++ GG + S+ +G Sbjct: 454 TGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGS 513 Query: 467 EVIAIL 472 L Sbjct: 514 TFHFTL 519 >gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1406 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 168/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + T+L + +++ + F FL+ Sbjct: 791 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELASFTPFTHIQKDFLN 850 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I + LA K+ + EK +L Sbjct: 851 QIAEMIATSVNTISVNTKTESLLAQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 910 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 911 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 970 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 971 LADNA-DANLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1029 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G + + Sbjct: 1030 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1089 Query: 392 TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G S+ D G GIA ++ + +F Q Sbjct: 1090 RPARDDVPQAIREQLLETGSLTDPDGGLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1149 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1150 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1191 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 94/277 (33%), Positives = 144/277 (51%), Gaps = 8/277 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L A+ E SL R++AEE N K FLA +SHELR+PLN ILG++++++ + Sbjct: 1166 QKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSHELRSPLNPILGWAKLLQTQNF- 1224 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N ETY++ + I R+ LI ++LD+SRI G+ L ++LI I+ + ++ Sbjct: 1225 --NAETYQKGLSTIERNAALQAQLIEDLLDISRIMRGKLNLKIVPVNLIFIIESALETVR 1282 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 L A+ K I I + +D ++ V D ++Q++ NLLSNAVKFT GG+V+V + SG Sbjct: 1283 LAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNAVKFTPTGGQVNVKLE-GSGNE 1341 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I++ D G GI+ +P V F Q G+GLGL I + ++ HGG S Sbjct: 1342 AVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGLGLAIVRHLVELHGGTVTANS 1401 Query: 461 K-LREGVEVIAILPN---TRVLNFIPEDNHESTQYKC 493 +G LP + D ES Q + Sbjct: 1402 PGENQGATFSVKLPLINQDTIPKTDSTDITESHQQRS 1438 >gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 1192 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 99/259 (38%), Positives = 156/259 (60%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + A+ + R +AE + KS FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 934 LRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIRTPLNAIIGFSELMIDEKFGP 993 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++ A+ L D + + I M+Q Sbjct: 994 IGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAHEAVPLNDTLAQVIAMMQP 1053 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I + L V AD + +RQ+ +NLLSNAV++T GG+V V+ + Sbjct: 1054 QANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVRYTPAGGQVVVSTVYERDGSV 1113 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G G++ E+ L F Q + + G GLGLP+ ++++ + QF I S Sbjct: 1114 VLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLGLPLTRAMVEANRAQFSIAST 1173 Query: 462 LREGVEVIAILPNTRVLNF 480 EG V I P TRVL Sbjct: 1174 PGEGTLVEIIFPPTRVLAE 1192 >gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 771 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ ++ R++AEE + K FLA+MSHE+RTPLNAI+GFS+++ + PL Sbjct: 519 IQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEP 576 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E E+I I ++ LL LIN+ILDLSRIE+G S + L ++ + QL Sbjct: 577 EEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMP 636 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYI 403 E +E+ ++ + +D + QV N ++NAVKFTA G + + ++ I Sbjct: 637 E-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAK-GYIEIGYELSADGKSILI 694 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + + V F + QG GLGL I QSI+ G + S++ Sbjct: 695 SVKDTGKGIPDDKKEKVFERFQKLDE----FAQGTGLGLAICQSIVHTFHGSISLESEVS 750 Query: 464 EGVEVIAILP 473 G + LP Sbjct: 751 VGSKFTISLP 760 >gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 546 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 16/329 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L A F V ++ + L A + + V +LS Sbjct: 220 LTIATFFLLATVGGSIWLSRRLVTEPLQRLCAMARRLGEGDWRAVQVVSGSGEVMVLSQV 279 Query: 219 AEKDD---------LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 EK L ++ + + N KS LA++SHELRTPL A+L Sbjct: 280 LEKVAGQLWESHHLLEQKVAERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLA 339 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++E++ T GPL E +E + +I S + LL I ++L ++R+EAGR EL + Sbjct: 340 YTEMLLDPTTGPLTPE-QRECLENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMA 398 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V+E +L A++K I++ + V AD ++ ++ NL+SNA+KFT+ GG+V Sbjct: 399 EVVQEVFSLLGPLARKKRIKLCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKV 458 Query: 390 HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V + + +Y + + D G GI E + F + K QG GLGL + + Sbjct: 459 TVKLSYGFDTTRYMLVKVTDTGVGIDPAEQEVIFEKFYRS----KKHSQGTGLGLTLVRE 514 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTR 476 ++ HGG+ + S +G LP Sbjct: 515 LVQLHGGRVWVESIPGQGSSFYFTLPLKE 543 >gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 936 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 13/316 (4%) Query: 181 SMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + + G+ ++ F +T + + + ++DL E ++ E Sbjct: 495 TWYAWYVLAGGLFVLSIISSFLLIVTGKENRLKLVTKKLEESENDLKLANEELEAKVRER 554 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 K+ N KS FLA+MSHE+RTPLN ILG S ++ + + EY+ I RS Sbjct: 555 TKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLLYER----MEKKENIEYLNIIKRSS 610 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL +IN+ILD S+IE+ EL L + + ++ + +N +I D L Sbjct: 611 EDLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQN-KIEIFWDNDL 669 Query: 359 SSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIA 413 + V+ D +RQ+++NL+ NA KFT G++ +TV S + I +KDNG GI Sbjct: 670 TKVYTSDRLRIRQILINLIGNANKFT-TNGKIEITVKELSSSQEISNLQIIVKDNGIGIP 728 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + SF Q I+ G GLGL I++++ GG S+ +G + Sbjct: 729 ATSQSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGTTFTFSIS 788 Query: 474 NTRVLNFIPEDNHEST 489 T+ + E+N ++ Sbjct: 789 LTKATDSEIENNFNAS 804 >gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 623 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 145/254 (57%), Gaps = 11/254 (4%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E +N K++FLA+ SHE+RTPL +I+GF+E++ + E ++EY+ I SG+HL Sbjct: 232 LERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYEAE-RERHQEYLQIIQSSGKHL 290 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+LIN+ILDLS+IEA + E+ ++ + + + +++ +A +K +++ +I+ ++++ Sbjct: 291 LSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLALVKEKAGDKGLKLQLEINEDVNTL 350 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D ++Q++LNLL NA+KFT + G V + V ++ D G GI++ ++ + Sbjct: 351 LVDPLRLKQMLLNLLFNAIKFTNV-GSVGLRV-VLKDSWLRFTVWDTGVGISQEDLSLLF 408 Query: 422 TSFGQGSIAIKS---AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT--- 475 + Q I + G GLGL + + + HGG +RS+L +G E ILP Sbjct: 409 RPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTIILPLKSER 468 Query: 476 --RVLNFIPEDNHE 487 ++L P+ + E Sbjct: 469 TTQILEIQPKPDLE 482 >gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 805 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E LI + + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ Sbjct: 320 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 379 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + NE ++++ ++ SG H++ L+NEILD S+IE G E + I+ Sbjct: 380 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 435 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ P+ AD+ +RQV+ NLL+NAVKFTA G V V Sbjct: 436 NSVYYTLCAEKGLQFKVYSTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 494 Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I +KD G GI E + F Q + G GLGL I + I Sbjct: 495 EHTREQANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 554 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG + S++ G L PE +YK Sbjct: 555 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 592 >gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 478 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 133/315 (42%), Gaps = 21/315 (6%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + + + + +Y+++ + + I AE V SD Sbjct: 163 TFGQMRESILWATLFGVLLSTIMVSYLSWSISRPLRTIERTAAEIGRGNYAERVQVDTSD 222 Query: 237 ETRKRAEEEN-----------------LAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E A+ N ++ FLA++SHELRTPL AI GF E ++ + Sbjct: 223 EISDLAQTINTMAQKLEKVEQERHHLEQVRNDFLANVSHELRTPLTAIQGFLEALQDGLV 282 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E ++Y ++ + L+++++DL ++E L + + + D++ Sbjct: 283 --EEEEARQKYYAVMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRVAFSF 340 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A+EK + + +++ L ++AD+ + Q++ NL+ NA+KFT+ G + + G Sbjct: 341 HQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNLVKNALKFTSA-GEIRMRASL-DGE 398 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GIA ++ + F + +G GLGL I + ++ H G+ + Sbjct: 399 YVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKCRVE 458 Query: 460 SKLREGVEVIAILPN 474 S +G LP Sbjct: 459 SSPGKGSTFTIWLPR 473 >gi|169335265|ref|ZP_02862458.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM 17244] gi|169258003|gb|EDS71969.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM 17244] Length = 818 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 137/270 (50%), Gaps = 9/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 F+++ KIL + D+I + E K E + A N AKS FL+ MSH++RTP+NAI Sbjct: 266 FENHKKILITLRDIQDMIQKEENNKIALKEAYESAARANEAKSEFLSRMSHDIRTPMNAI 325 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 G + + + P + E + I S HLLNLINE+LD+S+IE+G+ L+ I+ Sbjct: 326 FGMTSIAKNNLNDP---DKILECLDKITISSDHLLNLINEVLDMSKIESGKLSLTSEKIN 382 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L+ +V + I ++ +K+ + + S V +D +RQV LN+LSN++K+T G Sbjct: 383 LLHLVEDAITIISPDISKKHQNLSLDTSGVTHSDVISDSLRLRQVFLNILSNSMKYTPEG 442 Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + + V KD+G G+ E I + F + + + G GLG Sbjct: 443 GNIELKVNEVKSTLEGYGRYEFIFKDDGIGMNEEFINKIFAPFERADDSRINKVHGTGLG 502 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + I +SI+ G ++ SK G + I Sbjct: 503 MAITKSIVDLMSGDIVVESKKGRGSKFTVI 532 >gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1172 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|237748048|ref|ZP_04578528.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379410|gb|EEO29501.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 796 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 10/271 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +S+ +L+ + + ++I E K L + A N AKS FL+ MSH++RTP+NAI+ Sbjct: 243 RSHNILLATRTDITEIINE-RQQKKLLQDALNAANVANRAKSEFLSRMSHDIRTPMNAII 301 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + N E + + I S + LL+LINE+LD+++IE+GR LSE ++L Sbjct: 302 GMTAIAGAHLA---NQERMSDCLQKITTSSRLLLSLINEVLDMAKIESGRIILSEEEVNL 358 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 D+V + M+Q ++K + V D + ++QV+LN LSNA+K+T G Sbjct: 359 GDLVTSLLSMIQPDLKKKGHRFDVHLFNIDEEWVICDSQRIQQVLLNFLSNAIKYTPDNG 418 Query: 388 RVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + + +DNG G+ G + V F + + QG GLG+ Sbjct: 419 HIVFEITQLPSSENGFGKYRFIFRDNGIGMTPGFLEKVFEPFERADEVSIQSIQGTGLGM 478 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 IA++I GG + S+ +G +P Sbjct: 479 AIAKNIAEIMGGHIGVESEHGKGTTFTLTIP 509 >gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6] gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6] Length = 805 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 12/281 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E LI + + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ Sbjct: 320 DSEDEIKHLIETINEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILL 379 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + NE ++++ ++ SG H++ L+NEILD S+IE G E + I+ Sbjct: 380 KTPL----NEEQRKHLKTLYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSV 435 Query: 336 IIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + EK ++ P+ AD+ +RQV+ NLL+NAVKFTA G V V Sbjct: 436 NSVYYTLCAEKGLQFKVYTTVPTGRWYCADKARLRQVLFNLLNNAVKFTAR-GLVEVYFE 494 Query: 395 ---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I +KD G GI E + F Q + G GLGL I + I Sbjct: 495 EHTREQANYLSIKVKDTGIGIPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQ 554 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG + S++ G L PE +YK Sbjct: 555 MGGSVAVSSQVGLGTCFTVELALEC---TSPETESPEPRYK 592 >gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] Length = 470 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 30/360 (8%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + L + P AL +A + + + L Sbjct: 105 AELIIRAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRQDGSRLSAMVSVTALRN 164 Query: 210 SNVKILSCQ------AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + I+ + A+ + + +E E + KS FLA+MSHELRTP Sbjct: 165 RSDMIIGYLLIGTDNTARKQEEAQRKRFERALEEKNLELEHASRMKSEFLATMSHELRTP 224 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNA++GFSE ++ +G +++ T +EYIGDI SGQHLL+LIN+ILDLS++EAG +L Sbjct: 225 LNAVIGFSEALKDGLVGAMSD-TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMDLEL 283 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + L ++ +++++ +A ++ I++ L ++ D++ +Q++ NLL+NAVKF+ Sbjct: 284 EPVELAGLLANSLLIVREKAAQQRIQLKLDSQGDLGTLMLDQRKTKQIVYNLLANAVKFS 343 Query: 384 AIGGRVHVTVGWTSGRGQ-----------------------YISIKDNGPGIAEGEIPTV 420 A G VH+ V +S+ D G GIA ++ + Sbjct: 344 AHAGFVHLAVCEVDRDQVGLVPGDWPVYGFALQPSVHQRFLELSVSDTGIGIAADDMGKL 403 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +F Q ++ +G GLGL + + + HGG + S+ G + LP R Sbjct: 404 FKAFSQIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGLGARFVVWLPLHRAKPT 463 >gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 369 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 10/266 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A + ++KRAE + AKS FLA+MSHE+RTP++ ILG + ++ + +E Sbjct: 8 KANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQLTA----DQRE 63 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + LL++IN +LDLS+IEAGR ++ S+ +V + M+Q RAQ N++ Sbjct: 64 SLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARAQAHNLQ 123 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYIS 404 + I+ ++ + D ++Q +LNL+ NA+KFT G V V + Sbjct: 124 LLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNE-GSVTVRIFSQPSTPKTVDVEFE 182 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI++ ++ + F Q + G GLGL I + + GG S+ + Sbjct: 183 VQDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWAESEENK 242 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G +P E+ Q Sbjct: 243 GSTFGFRVPFRVSAEENLTYKTENRQ 268 >gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 906 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I ++ + AE AKS FL++MSHE+RTPLN ILG SE++ + + Sbjct: 369 FIRDITQRNDTLR-AKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKNGLD--D 425 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + ++ + I S ++LL+++++ILD S+IEAG+ L +L +++ +++A Sbjct: 426 KKLLEKNLEGISFSAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKA 485 Query: 344 QEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 +EK +++ ID + + D+ + Q+I NL+ NA+KFT G++ + + Sbjct: 486 REKGLQLITTIDERIPDIIVGDQYRLNQIITNLIGNAIKFTKQ-GKITLELQLIEETTDK 544 Query: 403 IS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ + D G GI + ++P + SF Q + G GLGL I ++ GG + Sbjct: 545 VTINFIVTDTGIGIPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFV 604 Query: 459 RSKLREGVEVIAIL 472 S+ +G L Sbjct: 605 ESEPGKGSSFHFKL 618 >gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 738 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 31/377 (8%) Query: 103 VYVWRIWLLVGQIA--IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 + W V G + ++ +++ T + L + Sbjct: 223 LTRWPHRDEVIGTVNRSGTAYDVIAVLKQDEGVVLRDTPR------FSTGKRELRVAAVR 276 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 +VA + +AG+ + L ++ + + AE Sbjct: 277 KIDRYPLVLAIVATDDLFLAGWRRSAWLIAGVSLVGAMSLLIVLLILVRNLRQREADMAE 336 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L + AE NLAKS FLA+MSHE+RTP+N ILG ++++ M Sbjct: 337 MEQL--------------KLAAEAANLAKSSFLATMSHEIRTPMNGILGMAQLLL---MS 379 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + EY+ I SGQ LL+L+N+ILD+S++EAG+ EL + + ++ E + + Sbjct: 380 GSAEDERHEYVRTILNSGQTLLSLLNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFF 439 Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TS 397 +A+ K + I + P++ AD+ +RQ++ NLLSNAVKFT G + + Sbjct: 440 AQAEAKGLSITAQWHGPAVQRYRADQIRLRQILTNLLSNAVKFTKE-GAIRIEAREIERE 498 Query: 398 GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + + D+G GIA + + F Q + G GLGL I +S+ GG+ Sbjct: 499 DGWARLEFAVIDSGIGIAPEKRALLFKPFSQLDSSATRQYGGTGLGLSIVRSLAELMGGE 558 Query: 456 FLIRSKLREGVEVIAIL 472 + S+ +G + Sbjct: 559 AGVESQPGQGARFWVRI 575 >gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 979 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 4/252 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + ++ AE+ + AKS FL+SMSHELRTPLNAILGFS+++EL+ PL Sbjct: 576 RDITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPL 635 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N + + + +I ++G HLL LINEILDL++IE+G+ +S ++ + ++ E I +++ Sbjct: 636 -NPSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPF 694 Query: 343 AQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A + I+I ID S V AD ++Q++LNLLSNA+K+ G+V + + Sbjct: 695 ADKHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKVNDKY- 753 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G G++ ++ + F + I ++ +G G+GL +A+ + G+ + S+ Sbjct: 754 RFHVIDTGIGLSNSDLELIFKPFYRL-NRINNSIEGTGIGLAVAKQLTELMNGEIFVTSE 812 Query: 462 LREGVEVIAILP 473 G LP Sbjct: 813 KGAGSHFWIELP 824 >gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] Length = 623 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 124/241 (51%), Gaps = 8/241 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + +F++++SHELRTPL ++ +SE + + ++E E++G I R ++ Sbjct: 380 EKIERDRRQFVSNVSHELRTPLTSVRSYSEALADGAI--KDSELAVEFLGVIQRETDRMI 437 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357 +I+++L+LSR+++ R E++ I +V + + Q ++ I +++ S Sbjct: 438 RMISDLLNLSRMDSNRQEMNLELIDFQGLVNHILDRFDMMIQSEDYVNEEYHIQRELTKS 497 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V AD+ + QVI N+L+NA+K++ GG + V + T+ +S++D G GI + + Sbjct: 498 PIWVEADQDRLTQVIDNILNNAIKYSPDGGTITVRL-MTTHNEAILSVQDQGLGIPQKAL 556 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 V F + A + G GLGL IA+ ++ H G+ S +G LP Sbjct: 557 GHVFDRFYRVDKARSRQQGGSGLGLAIAKEVVELHHGKIWANSIENKGSTFFISLPFEPD 616 Query: 478 L 478 + Sbjct: 617 M 617 >gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 1170 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 777 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 7/383 (1%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + G + L W+ ++ + G PE S+ + + A L Sbjct: 250 YVGGARSEALGWSFISRLPAGFDHPEIRMTTLIVCGGFLASLVIGALLAMYGASRLLRPL 309 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 V + S + + G + T I + + L A + Sbjct: 310 ARVVKQAHEVASGRPVRLWPQGRIKEFNDLSTDIGQMASAILEREHELRELNSKLEARVV 369 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ AEE N AKS FLA+MSHE+RTPLNAI G + ++ + + + Sbjct: 370 KRTEELSRAKEVAEEANRAKSTFLANMSHEIRTPLNAIAGMAALMRRAGL----EQEQET 425 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + +G HLL +IN +LDLS+IEAG+ L E L + I ML RA EK++ Sbjct: 426 RLDKLEAAGGHLLEIINMVLDLSKIEAGKLTLQEDVFPLGSLFENVISMLHERALEKHLS 485 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIK 406 + ++ + D ++Q +LN +NAVKFT G + ++ Sbjct: 486 LSFELPDLPPLLCGDRIRLQQSLLNYATNAVKFTEQGSVFMTAALLEETEEDVLIRFEVR 545 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIA + +F Q + G GLGL I I A GG+ + S++ G Sbjct: 546 DTGIGIAPEVQKRLFKAFEQADGSTTRQYGGTGLGLAITAKIAAAMGGETGLESEIGNGS 605 Query: 467 EVIAILPNTRVLNFIPEDNHEST 489 + + E + E T Sbjct: 606 TFWFTARLRKAILGSQEAHQEPT 628 >gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 1170 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] Length = 1068 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 10/252 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++AE + AK FL+ MSHE+RTPLNAILG + + + + + + S Sbjct: 550 EKAEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQHL---DDTKKVENCLKKLTLSSN 606 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL- 358 HLL LIN++LD+S+IE+G+ EL + + +A+EK +E + + Sbjct: 607 HLLALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKGLEYKTVLTGEVD 666 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAE 414 ++ D + Q++ NLLSNA+KFT GG + + V + + D G GI E Sbjct: 667 ETLVGDSLRLNQILTNLLSNALKFTPAGGSIQLRVSQKVQGSNTVRLHFEVTDTGCGIDE 726 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF Q ++ + G GLGL I + GG + S+L EG LP Sbjct: 727 QNYQKIFESFEQEDSSVTNKYGGTGLGLSIVKRFSELMGGSVSVSSRLGEGSTFAVELPF 786 Query: 475 TRVLNFIPEDNH 486 + + PE+N Sbjct: 787 QKTVQ--PENNT 796 >gi|163814660|ref|ZP_02206049.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759] gi|158450295|gb|EDP27290.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759] Length = 623 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 166/340 (48%), Gaps = 19/340 (5%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 Y + + +++ + + ++ AL + + LAG+ +A+ Sbjct: 150 FPYTYVVVTLVSAVAYSITRKEKRSAVIMTIALIPALICSVLQVIAGGSYILAGLTLSAI 209 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + +++ K + +A LE +K +E A + N AK+ FL SMS Sbjct: 210 FVY-----------MELCMEDIRKVEKLAMLEKSKRELEEALDMANKANSAKTVFLNSMS 258 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 H++RTP+NAI+GF++++ + + ++YIG I S +LL+LIN +L+++RIE+G Sbjct: 259 HDIRTPMNAIIGFTDLLGENLG---DEKKARDYIGKIKSSSDYLLSLINNVLEMARIESG 315 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 R +L E IS+ + + + + +EK+I+ ++ +++ D ++++++N+++ Sbjct: 316 RSDLDERDISVEKSLDAVYWIFEAQMKEKHIDFIWDVNVKHNNIKCDVVKLKEILMNIIN 375 Query: 378 NAVKFTAIGGRVHVTVGW---TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA K++ G V V + I ++KD G G++E + + F + + + Sbjct: 376 NAYKYSLPGDSVAVRIEEIPCDRDGYARIQTTVKDTGIGMSEEFLEHIFEDFTRAQTSTE 435 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 S + G GLG+ I + I+ GG ++SK G L Sbjct: 436 SGQFGTGLGMAIVKKIVDLMGGTIDVQSKQGVGTTFTVTL 475 >gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297] gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297] Length = 1593 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 141/282 (50%), Gaps = 9/282 (3%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + I E + ++ +A AKS FLA+ SHE+RTPLNAI+G S Sbjct: 818 LEDRTLVSAALRDITERKNSEEKLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLS 877 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ E + E + I SGQ LLN+IN++LDLS+IEA ++ + ++L ++ Sbjct: 878 HLLDHENL----TENQHLLVDKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLREL 933 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + + +++A K +E+ IDP + V D+ ++Q++ NL SNA+KFT+ G + Sbjct: 934 IEDTLNVHRMQADLKGLEVALNIDPKVPNWVETDKTRLKQILDNLFSNALKFTSE-GSIS 992 Query: 391 VT---VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V T + D G GI+E + F Q ++ G GLGL I Sbjct: 993 LRCHLVEETDRATVRFEVIDTGIGISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILK 1052 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 ++ G+ + S+ +G LP + + ++ ES Sbjct: 1053 LVYLMEGRLGLESEEGQGSRFWFELPFKTLSDNELDNLSESA 1094 >gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 569 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 7/256 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 K+ L +E+ R+ +E N AKS FLA MSHELRTPLN++LG +V++ M Sbjct: 182 KEKLQRIVELRTRELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMS 241 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + + S LL +I++ILDLS+IE+G + LS I++ D V + Q Sbjct: 242 AG----HINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQ 297 Query: 341 LRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 L A K + I I+ W D + QV+ NL+ NAVKFT G++ + V Sbjct: 298 LVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIRVNL-END 355 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 IS+ D G GI + +I ++ T+F Q +I G GLGL I + ++ G + Sbjct: 356 ELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVS 415 Query: 460 SKLREGVEVIAILPNT 475 S+ +G + +P Sbjct: 416 SQFGKGSTFVVKIPVK 431 >gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1142 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 137/292 (46%), Gaps = 10/292 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSR 251 L ++ E ++ LE KS +E R + E KS Sbjct: 431 LLQVSEEELRVQQEELKQINTELEEKAFMLEEQKSTIEEARDQIQLKADELERSGRFKSE 490 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLN+IL S ++ E G NE + Y I+ SG LL LIN+ILDL Sbjct: 491 FLANMSHELRTPLNSILILSRIL-GENKGARLNEEEQRYASVIYNSGNDLLTLINDILDL 549 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 +++EAG+ EL IS ++ E Q A+ K +E+ + S + D + Q Sbjct: 550 AKVEAGKIELVHEHISTESLLVEVRNTFQKIAENKGLELAVEKTGSCPDMLLTDHTRLLQ 609 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NL+SNAVKFT+ GRV +T+ + + + D G GI + ++ +F Q + Sbjct: 610 ILRNLISNAVKFTSAPGRVSLTIS-EADGYLHFEVADTGIGIPLEKQASIFEAFQQADGS 668 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I++ + + G +RS EG +P + P Sbjct: 669 TSRKYGGTGLGLSISRELASLFNGSISLRSTPGEGSVFTLKIPYLTESDEQP 720 >gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] Length = 911 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAA 280 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + E II+L A EK +E+ ++ + + D Sbjct: 337 DVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQLVGDA 396 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + + V + + + I D G GI+E + + Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTGIGISESQQAQLFQ 456 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGSTFRFHL 506 >gi|146297994|ref|YP_001192585.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146152412|gb|ABQ03266.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 724 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 17/266 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +AE+ + A+S FL+++SHELRTPLNAI G + ++ + + Sbjct: 339 REKNKELILAKNKAEKASKARSEFLSTVSHELRTPLNAINGITHLLLED----NPKKAQL 394 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +Y+ + SG +L INEIL++++I++ + E+ + +L +++ L+ A Sbjct: 395 KYLESLKFSGNYLTTFINEILEINKIDSTKVEVENISFNLKELLFNIQSSLKELATANKN 454 Query: 349 EIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYI 403 +ID ++ + D + Q+ILNL++NA+KFT G+V V Y Sbjct: 455 YFNLEIDKAIPDILIGDPTKLSQIILNLINNALKFT-QNGQVSVIAKLFAEEDENATVYF 513 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G GI E ++ TV SF QGSI + G GLGL I + ++ GG+ ++S++ Sbjct: 514 EIVDTGIGIPEDKLQTVFESFSQGSIEVNRKYGGTGLGLTIVKKLIELLGGEIKLKSEVG 573 Query: 464 EGVEVIAIL-------PNTRVLNFIP 482 +G L P V P Sbjct: 574 KGSTFTFKLNFKINNEPLEAVTEEKP 599 >gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 589 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 2/224 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP+ I G++E + M + E ++++G I + L LI ++ Sbjct: 365 RRDFVANVSHELRTPVTVIKGYAEALIDGAM-ETDPERARKFVGIILSHSERLAALIGDL 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS++EAG L ++ + + + + +LQ +A K I I SV AD + Sbjct: 424 LTLSQLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRL 483 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NLL NA+K+T GG + + I +KD G GI ++P + F + Sbjct: 484 EQVLVNLLDNAIKYTPEGGAISFSAA-VKENMVRIGVKDTGVGIPPKDLPRIFERFYRVD 542 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A E G GLGL I + I+ HGG + S+ +G E + Sbjct: 543 TARSRDEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTI 586 >gi|109900591|ref|YP_663846.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702872|gb|ABG42792.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1011 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 101/446 (22%), Positives = 175/446 (39%), Gaps = 29/446 (6%) Query: 46 FRVSPILPLFVLLVANIGTWF--TQNPIFPMWS-LITLAVYAANLSLGKKVMNSDIKIGE 102 + + A + F W L A + ++ Sbjct: 209 LYYALSTLFYTSSWAAVFGVFEYLHMFSAKDWLMAGFLLGSAFSAFFQIAFFRLNVSSKP 268 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS------- 155 L+ + L + ++I SA L+ L I +S Sbjct: 269 A-----MYLLLVLGCLCLLFLPLAIYSQALGLIIVSIMTSAVLMTGLFIGIMSWIKGYRP 323 Query: 156 NFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLDISLAGMLATA----LSFFTYITYHLFK 209 A+ P ++ L+ + + + + L + A L+F L Sbjct: 324 ARYFTIAILCVIIPNIIGNLLNLRILTDISLDIYLLGFVGIAADTLILAFALAEKMRLVN 383 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAI 267 S +L Q E I ++++ + E N AK FLA+MSHE+RTPL +I Sbjct: 384 SRNALLKQQLEHKVKIRTQALSEANRKLAKSNHELVEANSAKDYFLANMSHEIRTPLTSI 443 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G+++ I +G ++ + I+++G HLL +IN+ILDLS+I+A + E Sbjct: 444 IGYADGIL---LGDIDKAEQERVTNIIYQNGAHLLRIINDILDLSKIDANKLEFDTQPCH 500 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 L ++ E + RA++K I D L + D ++Q++ NL +NA+KFT Sbjct: 501 LFTLLGEIESVAGKRARDKGIGFHVNYDFPLPDKIITDAVRLKQILFNLTNNALKFTHS- 559 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G + + V + I + D G GI++ ++ + F Q I G GLGL IA+ Sbjct: 560 GHITLNVSI-ANTTLIIKVIDTGEGISQSDMHKLFHPFTQADSVINRQVGGTGLGLSIAK 618 Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL 472 + GG S+LR+G + Sbjct: 619 RLAQGLGGDISALSQLRKGSTFTVSI 644 >gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] Length = 801 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 18/282 (6%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++++ + DD+ E E + AE+ N AK+ FL+ MSH++RTP+N I+G + Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427 Query: 272 EV----IELETMGPLN---NETYKEY------IGDIHRSGQHLLNLINEILDLSRIEAGR 318 V ++ E G N +E Y + I S LL+LIN+ILD+S+IE+G+ Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 +++ ++L D +R +M++ +A+E+ + P + + D + Q++LNLL Sbjct: 488 MKIANREMNLKDTIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547 Query: 378 NAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+K+T G + + V + + I D G G++E + + F Q Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +G GLGL I++ ++ G S+ +G +P Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPGKGTVFTVKIPMK 649 >gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] Length = 958 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 22/356 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + +LI + +S + + I +++ G Sbjct: 344 VLGMLIVILIVWKVVYVSVLKRLAEYSSALSSIAQGQLNVDITVKGNDELAHMGQAIITA 403 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAE--LEVAKSLSD-------------ETRKRA 242 + +S K E + + E E L D + R++A Sbjct: 404 RNTAQSLKVVAESEAKAKRELQEHKEHLEELVTERTHQLQDTNKRLNHEVLNHAKARRQA 463 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + AK+ FLA+MSHE+RTP+N +LG + +++ + N ++ I+RSG LL Sbjct: 464 EQASRAKTAFLATMSHEIRTPMNGVLGTARLLKETGL----NSKQGHFVDVINRSGTTLL 519 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++N++LD S+IEAG E+ +L D+V++ +L RA+EKNIEI I+ +S + Sbjct: 520 AILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEISTLIESDVSQFL 579 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + QV+ NL+ NAVKFT G ++VT + D G GI++ E T+ Sbjct: 580 YGDVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQDGQVLFEVSDTGIGISQEEQETL 639 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +F Q S + S G GLGL I++ I+ GG + S++ +G +P ++ Sbjct: 640 FDAFTQASGGMSSK-GGTGLGLAISKRIVEAMGGFLQLESEVGQGSRFSFSVPLSQ 694 >gi|163852796|ref|YP_001640839.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163664401|gb|ABY31768.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 1071 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 170/361 (47%), Gaps = 15/361 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 +E + I + ML + V+V A H Sbjct: 477 LEVQAHDALARVLPARTAAWIGAPLGRYIALMLTLITVIGLILVIVHAGAAATHPEHAET 536 Query: 187 ISLA--------GMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDE 237 + A ++ +++ + + + + Q + IA +V + + Sbjct: 537 LRAALTSLFFILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQ 596 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE NLAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS Sbjct: 597 AKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRS 653 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHL LI+ +LD+SR+EAGR + + I L D + + + M++L+A+ + Sbjct: 654 AQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRPEI 713 Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L +V A DEK +RQ++LNLLSNA+KFT G V + + + G+ +I+D G GI E + Sbjct: 714 LPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTYR-GQVAVFTIRDTGLGIPEAD 771 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F +GS+ A G GLGL IA + GG+ + S++ EG L Sbjct: 772 LGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRLMLAS 831 Query: 477 V 477 V Sbjct: 832 V 832 >gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] Length = 980 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + + R++A E KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 593 LITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTT----ED 648 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E+I I + Q LL LI++ILDLS+IEA + + + L + R+ ++ R Sbjct: 649 EHEREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRL 708 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + N+ + + V + + QV++NLL NA KFT+ G + G Y Sbjct: 709 -QPNVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFTST-GSITFGYEIR-GEELYF 765 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462 +KD G GI++ + + F + + QG GLGL I ++I+ G+ + S+ Sbjct: 766 YVKDTGRGISQEDQNKIFERFTKVD----TFTQGTGLGLSICKNIIEKMKGRIGVESEGK 821 Query: 463 REGVEVIAILPNTRVLNFIPEDNHES 488 +G +P + HE+ Sbjct: 822 DKGSTFWFTIPYKPEIATQHNKRHEA 847 >gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] Length = 617 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 151/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] Length = 711 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 6/247 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +E R+ A N AKS FLA MSHE+RTP+N I+G ++++ + P Sbjct: 189 RRLITRLEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDLTP----EQD 244 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ + RSG LL +IN+ILD S+IEAG+ L+ L +IV + +L A K + Sbjct: 245 SYVSTMVRSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGL 304 Query: 349 EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 ++ + P L + D +RQ+++N+ NAVKFT G V + I + D Sbjct: 305 MLYSDVAPDLPEIMLGDAGRLRQILVNIAGNAVKFTLE-GHVALRASAGGPGQIVIRVHD 363 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G GI + V T+F Q + G GLGL +++ ++ GG + S+ EG Sbjct: 364 SGVGIPSDQQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTR 423 Query: 468 VIAILPN 474 LP Sbjct: 424 FDITLPL 430 >gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 456 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 9/300 (3%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 M + +L + L + LS I K + LS L + E + + Sbjct: 160 HFMMVGILSVFLTIITIALLSRIITIPLIRMKQATEKLSKGDFSVHLQVKGEDELAELGK 219 Query: 238 T----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + E ++ FLAS+SHELRTPL + G++++ MG E Y+ Sbjct: 220 AIQTLARDLEYLKKERNEFLASISHELRTPLTYVKGYADIARRSNMG---EEERNRYLSI 276 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ +H+ L+ ++ +L++++ +++ + +L ++ +Q Q K + + Sbjct: 277 IYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYY 336 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 D S+ +V D+K QV++NLL NA+K++ G V + V I + D G GI Sbjct: 337 CDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSIVSIDV-RKEKHHIVIIVSDEGRGIP 394 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++P + F + + G GLGL I + I+ HGG S+ +G +I LP Sbjct: 395 KEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454 >gi|16124976|ref|NP_419540.1| sensor histidine kinase / response regulator [Caulobacter crescentus CB15] gi|13421950|gb|AAK22708.1| sensor histidine kinase / response regulator [Caulobacter crescentus CB15] Length = 591 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 99/460 (21%), Positives = 166/460 (36%), Gaps = 40/460 (8%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSP---ILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 + F + R P + A I +W L Sbjct: 20 PRTSAALPRFAEWLDQDVTSVTARSLPTLGVRLAICAATALIYALAVDLQGGLLWGLAVA 79 Query: 81 AVYAANLSLGK--KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 + AA + + + + + W L ++ P Sbjct: 80 SAEAAVFICSSPQRADRKISHAQRLS-----YVAAVAWMNIVWWSLAIMLWRQDHPALRM 134 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + A + + + + L +++ LA A + Sbjct: 135 AALCVVCAFLVHAQAFTARSKTLLLIVGGGSATLLLVLCGVLNDFPPSERLALCAAAIIL 194 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + +AE + AKS FLA MSH Sbjct: 195 IIYTAKAAQTNG-------------------QQGRALELAKSQAEAASQAKSEFLALMSH 235 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN +LG S+ ++LE + P +E + + SG+ LL L+N++LD+++IEAG+ Sbjct: 236 ELRTPLNGMLGLSQALKLEPLEPGE----REQVELLEESGRTLLALLNDVLDMAKIEAGK 291 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 +++ + L + + + Q +A+EK EI +IDP+ + D +RQ + NL+S Sbjct: 292 LDIAPTQEDLSRLAERVVRINQAQAREKGTEITLEIDPATPRALLFDPLRVRQCLGNLVS 351 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NAVKFT G++ V V +G I + D G G+ + + T F Q I Sbjct: 352 NAVKFTPA-GQIRVRVTCEAGDQPDRMLAKIIVSDTGVGMGPAVLARIFTPFEQADPTIA 410 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + + GG +RS +G Sbjct: 411 RRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGSTFTLTF 450 >gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp. 'N.t. morphotype B'] Length = 609 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 120/231 (51%), Gaps = 4/231 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++ + + F+A++SHELRTPL I ++E + + ET +++ + + + Sbjct: 371 QKLDQMRKDFVANVSHELRTPLTTIKTYTETLISGAIDE--KETALDFLSVMEKETDRMT 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSV 361 L++++L+LS+I+ + +L+ + + ++ + I ++A+ K+ +I + + + Sbjct: 429 TLVHDLLELSKIDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSYNKNKEYLI 488 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QV N+LSNA+K+T G++ + + ++ + I +KD G G+++ ++ + Sbjct: 489 EGDPARIGQVFHNILSNAIKYTEDNGQIKINLS-SNDQQVVIKVKDTGIGMSKKDLERIF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL IA+ ++ HGG + S L G VI Sbjct: 548 ERFYRADKARSRKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTVIXTF 598 >gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 740 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 138/317 (43%), Gaps = 13/317 (4%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 S ++ G+ L S + S E Sbjct: 272 ALPGVCQGTFIRSLVIAPVGREAPVAALGIYWATGLAPDPEAVRLLYSLADLASVVMENL 331 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L EL+ E + AE+ N AKS FLA+MSHE+RTP+N I+G +E+ + Sbjct: 332 RLYDELKTRAEELGEQKAIAEKANRAKSEFLANMSHEIRTPMNGIMGMTEL----ALLSE 387 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + Y+ S HLL++IN+ILDLS+IEAG+ L L+ + L + Sbjct: 388 IPDQTRSYLQMAKSSALHLLSIINDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPLAMT 447 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A++ + + IDP++ + + D+ +Q++ N++ NAVKFT G+V V V G Sbjct: 448 ARKNGVALTCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRK-GQVEVGVRPADSAGG 506 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ++D+G GI G + + SF Q + + G GLGLPI++ + GG Sbjct: 507 DAGRSRLLFWVRDSGIGIPAGRLEAIFESFAQATSSAHIEFGGTGLGLPISKKFVEMMGG 566 Query: 455 QFLIRSKLREGVEVIAI 471 + S+ G Sbjct: 567 SIWVESEEGRGSTFSFT 583 >gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 1236 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 12/273 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 V I E + + R AE+ N AKS FLA+MSHE+RTP+N ++G Sbjct: 528 VGEERHFTGVMRDIREHVRIMNDLQQARIEAEQANKAKSAFLAAMSHEIRTPMNGVIGMI 587 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +V+ ++ E I S LL++I +ILD S+IEAG+ E+ + +SL +I Sbjct: 588 DVLRQTSLTGY----QMEMANLIRDSAYSLLSIIEDILDFSKIEAGKLEIEKIPMSLANI 643 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGG 387 V ML A K +E+ IDP + + D +RQ+++N+++NA+KF+ G Sbjct: 644 VENACGMLAHVALSKKVELTLFIDPEIPENMLGDPLRLRQILVNIINNAIKFSSKQEKQG 703 Query: 388 RVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +V V V T I DNG G+ + + SF QG + G GLGL Sbjct: 704 KVSVRVLLTESNPDQVVVTFQITDNGIGMNKETQEKLFKSFSQGDPSTTRRFGGTGLGLA 763 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I+ + + ++S + G I +P Sbjct: 764 ISHHLAELMDAEITVQSAPQHGSTFIIQMPFKP 796 >gi|320581795|gb|EFW96014.1| Histidine kinase osmosensor [Pichia angusta DL-1] Length = 1043 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 140/316 (44%), Gaps = 23/316 (7%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIAELEVA 231 + +A L T + F IT + + E D L ++ Sbjct: 400 VDGLWKEITTNVNIMAANLTTQVRAFAQITAAATDGDFTRFITVEASGEMDALKTKINQM 459 Query: 232 KSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E R+ AE N AKS FLA+ SHE+RTP+N I+G +++ + Sbjct: 460 VLNLRESIQRNTAAREAAELANRAKSEFLANTSHEIRTPMNGIIGMTQLTLETQLTQY-- 517 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + +H LL +I++ILD+S+IEA R + E SL V + L ++A Sbjct: 518 --QREMLSIVHNLANSLLTIIDDILDISKIEANRMTIEEIDFSLRGTVFGALKTLAVKAI 575 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396 EK +++ K+D S + D +RQVILNL NA+KFT+ G+V V+V T Sbjct: 576 EKQLDLIYKVDNSFPDNLVGDSFRLRQVILNLTGNAIKFTSR-GKVTVSVKKTSRVINNT 634 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + D G GI + ++ + +F Q + G GLGL I++ ++ GG+ Sbjct: 635 DKLLLEFCVSDTGIGIEKDKLGVIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEI 694 Query: 457 LIRSKLREGVEVIAIL 472 + S EG + Sbjct: 695 WVTSNYGEGSNFYFTI 710 >gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 591 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL I+GF + ++ + + E + ++G I + L L Sbjct: 359 LEKMRSEFVANVSHELKTPLTTIIGFVDTLKRKPG--EDKEKRQRFLGIISEEVERLKRL 416 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I +IL LS +E + +++ + + + ML A KNI I I+ + + Sbjct: 417 IEDILLLSHLENQSSSNNLEEVNIYKELDDILYMLTPSANRKNIGINLIIEKNFTLYVKS 476 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + +Q ++NL+ NA+K+T G ++V+ I +KDNG GI + +I V F Sbjct: 477 KDWFKQAVMNLIDNAIKYTQPEGHINVSAYIKENNALII-VKDNGVGIPKEDISRVFERF 535 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + +E G GLGL I + I++ G + S+L +G E I LP + Sbjct: 536 YRVDKSRSRSEGGTGLGLAIVKHIVSELDGSIYLNSELNKGSEFIIQLPLNK 587 >gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 632 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 11/233 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+RAEE + KS FLA+MSHE+RTPLNAI+GFS+++ + E E++ I + Sbjct: 391 RERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET----DDPEERHEFVEIIDSNN 446 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LL LI++ILDL++IE+G + + +S+ +++ E + +++ + N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPE 505 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++D + QVI N L+NA+K+T+ G + G S+ D G G+++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + F +G + +QG GLGL I ++I+ GG+ + S+L +G Sbjct: 564 HIFDRFYKG----NTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 878 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 13/314 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-------E 229 +S H + LAT ++ L ++ + + E + AE+ Sbjct: 310 WLRVSEHPISTGGVLSLATDITAQKMREEELRRALEDVDEARREAELQAAEMVALAEELA 369 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A++ +DE R +E N AKS F+A MSHE+RTPLNA+LGF++++ + +E Sbjct: 370 AARTRADEARAESEAANRAKSDFVAVMSHEVRTPLNALLGFADLLLQTPLTA----EQRE 425 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ +G+ LL +++++LD S++EAGR E+ L + R +++ A+E+ + Sbjct: 426 WVTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGLA 485 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + +DP L V D K +RQV+LNLL+NAVKFT G V + V + + D Sbjct: 486 LRVAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTER-GHVALAVFPVADGRVRFEVLDT 544 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA + + F Q A G GLGL I + ++ GG + S G Sbjct: 545 GIGIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESAPGRGSLF 604 Query: 469 IAILPNTRVLNFIP 482 LP + P Sbjct: 605 WFELPLPADESSRP 618 >gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1283 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 10/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +++L+ A+ + ++ AE+ +L KS+FL+ MSHE+RTP+NA++G S ++ E Sbjct: 1018 RDVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE----D 1073 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + + S ++L+ LIN+ILD ++I++G+ EL E + L ++V + + Sbjct: 1074 PRADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVHSHSFQ 1133 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--SGR 399 A EK++ + IDP L + D + Q+I NLLSNA+KFT G V + + Sbjct: 1134 ANEKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDK-GEVTIKLSHEILEKG 1192 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 D G G+ E + ++ +F Q S + G GLGL I + ++ +GG Sbjct: 1193 ICRVNFECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLYGGDIE 1252 Query: 458 IRSKLREGVEVIAI 471 + S + G Sbjct: 1253 VNSNISGGSTFKFY 1266 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 151/383 (39%), Gaps = 9/383 (2%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + L + L E P+ L + + + +++ Sbjct: 199 AAQQLSNNLRDLPFTLTYLFEPDGSAHLAGVTGLSEGHPAAPDTLPV-DGSGVWPVEALA 257 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + ++ ++ + + G L L + Sbjct: 258 RGESVLVALDGAPFTALPAGDWPEPPAQALVLPLLRQGGTPYGFLVAGLNRYRALDDAYH 317 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGF 270 L A L A + A+S + R+ E E + AK+ F +++SHE RTPL I+G Sbjct: 318 GFLELTA--GHLAAGIASARSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGP 375 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 E + + G + +E + IHR+G L L+N +LD SRIEAGR + + L Sbjct: 376 VEELRTQLAGA--DARVREELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQ 433 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + + + ++ P V+ D +VILNLLSNA+KFT G + Sbjct: 434 VTADLASVFRSAVDKAGLDFRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFD-GSIG 492 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 VTV I++ D G G++ E+P + F + A + +G G+GL + + ++ Sbjct: 493 VTVRARDEH-AVITVTDTGIGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVG 551 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 HGG S EG LP Sbjct: 552 LHGGTITADSTEGEGTRFTIRLP 574 >gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 1138 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 6/255 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 EK A L+ + + AE + KS FLA+MSHE+RTP+ AI+GFS+++ + Sbjct: 718 TEKCAAEARLKAVNAELMLAHQDAERASKIKSEFLANMSHEIRTPMTAIVGFSDLLLEQG 777 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ E ++ +G I R+G HLL LIN+ILDLS++E+G++++ + +++R+ + Sbjct: 778 ---MSEEEKRKSVGTIQRNGNHLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHEL 834 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396 L RA + + ++ +L + +D ++Q + NL+ NA+KFT G V V Sbjct: 835 LNERAITQENRLQIELKGALPQTIHSDSTRLKQALFNLVGNAIKFT-QNGVVKVIAECDF 893 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D+G G++ ++ + F Q + G GLGL I + I GG Sbjct: 894 AHEQMIFQVIDSGIGMSPEQLEQIFQPFRQADASTTRKFGGTGLGLTITKQIAELLGGDV 953 Query: 457 LIRSKLREGVEVIAI 471 + S+ G Sbjct: 954 RVESQSGVGSSFTLR 968 >gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 893 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 16/286 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAK-SLSDETR--KRAEEENLAKSRFLASMSHE 259 + + + + L A+ E A + S+ + K E+ + KS+FLA+MSHE Sbjct: 448 LQAQTEELQTHSVEMHLLNERLGAQKEAALIAASELEKYAKELEKSSKYKSQFLANMSHE 507 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S+++ G L E Y IH SG LLNLIN+ILDLS++EAG+ Sbjct: 508 LRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHNSGSELLNLINDILDLSKVEAGKM 566 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++ ++L ++ A+ KN+E ++ L +++D + Q++ NLLSN Sbjct: 567 QIEMDLVNLTELPELMQGYFSKSAESKNLEFDIEMSDDLPDMMYSDGMRLHQILRNLLSN 626 Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 A+KFT G V + V SG S++D G GIA + + +F QG Sbjct: 627 AIKFT-ESGSVKLRVKKMNSIVTSDFIISGDVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+ + GG + S+ G I LP Sbjct: 686 ETTARKFGGTGLGLSISLHLAKLLGGYITVESEEGIGSTFILYLPL 731 >gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275] gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275] Length = 427 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 126/239 (52%), Gaps = 8/239 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R RAE N+ K F+A++SHEL+TPL +I GF+E ++ ++ ET ++ I Sbjct: 196 ERVRAE--NMRK-DFVANVSHELKTPLTSISGFAETLK--LNENIDKETRNRFLTIIDGE 250 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI +IL LS IE + E + AI+L + R ML + A+ KNI + + D S Sbjct: 251 ANRLRRLIEDILTLSFIENDKKE-EKEAINLYSVYRRVEDMLMISAKTKNIALACEADES 309 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + S+ A+ ++Q+ILNL+ NA+K+T G V+V + +T I + D G GI + + Sbjct: 310 I-SLQANADYVKQIILNLVDNAIKYTPENGAVNVKI-FTEKENAVIKVSDTGMGIPKEDQ 367 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F + A G GLGL I + I+ N GG + S+L +G +P R Sbjct: 368 SRIFERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEKGSTFTVKIPIKR 426 >gi|153869369|ref|ZP_01998997.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074110|gb|EDN71002.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 483 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 32/284 (11%) Query: 220 EKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 E L +L+ A +++++ RK AE N AK+ FLA MSHELRTPLNAILG+S Sbjct: 194 ENLQLYLDLKEANQQTSYMLAIAEQARKMAEAANQAKTSFLARMSHELRTPLNAILGYSG 253 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +I+ + + + + I +G+ LL+ I+ ILD+S+IE+ + EL+ + ++ ++V Sbjct: 254 MIQEDASDLGYQDILPD-LDKIQVAGKQLLDTISNILDISKIESDKLELNLTEFAVSNLV 312 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + +Q + + ++ L ++AD + Q++LN+L+NA KFT G++ + Sbjct: 313 NEVVTTIQPLIKINGNQFECQMSDDLGRLYADYHKVTQILLNILNNANKFTHA-GKITLD 371 Query: 393 VGWTS-----------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 V + I D G GI ++ + +F Q Sbjct: 372 VTRKRMSKIIAETENCELALESEVLDTFTDWVFFQINDTGIGIPSDKLNLIFEAFAQVDT 431 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL I ++ GG+ + S + EG LP Sbjct: 432 STTRQFGGTGLGLAICENFCKAMGGKISLCSTIDEGSTFTIQLP 475 >gi|149192095|ref|ZP_01870319.1| sensor histidine kinase [Vibrio shilonii AK1] gi|148834081|gb|EDL51094.1| sensor histidine kinase [Vibrio shilonii AK1] Length = 734 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 9/256 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI D+ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + Sbjct: 324 EIRYLIDTFNEKTIYLDQERVKAQASTKAKTAFLATLSHEIRTPMNGVLGTAQILLKTDL 383 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++ + ++ SG H+++L+NEILD S+IE G EL L I+ + Sbjct: 384 NL----EQRKLLKTLYDSGDHMMSLLNEILDYSKIEQGHLELENRPFPLSSIIGSMHSVY 439 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 EK + + + + D+ +RQ++ NLL+NAVKFT+ G V V + Sbjct: 440 HTLCNEKGLRFSVFSEVDETRWYSGDKARLRQILFNLLNNAVKFTSQ-GMVEVYLSEEVN 498 Query: 399 RGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I +KD G GI+ V F Q + G GLGL I Q I GG Sbjct: 499 DGVTALVIRVKDTGIGISPDAQARVFKPFEQAESSTTRRFGGTGLGLAIVQEITHCMGGN 558 Query: 456 FLIRSKLREGVEVIAI 471 + S+ G E Sbjct: 559 ITLTSQEGMGSEFTVR 574 >gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 1206 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 99/364 (27%), Positives = 159/364 (43%), Gaps = 10/364 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + P + + AL++ + + Q +S +L Sbjct: 626 MAPQLDAGLADYLLLMGLVTPALALVLGIAHRQALRLLGDQAAALGPTLAQGFVSSFLLL 685 Query: 187 ISLAGMLATALSFF----TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 AG+ + + + A L+ A+ +D R A Sbjct: 686 WIAAGVGVWWGVLAHRSRAAAQEESNRQTLALQREIESHARTDAALQAAREEADRARGHA 745 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N AKSR++ ++SHELRTPLN+ILG+++++E + P ++ + I R G HLL Sbjct: 746 EAANRAKSRYITTISHELRTPLNSILGYAQLLEEDEAMP---PHRRQAVAVIRRGGDHLL 802 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 +LI LD++RIE+G+ L + D + E M +L+A + + +D L V Sbjct: 803 SLIEGTLDIARIESGKLALDVRPMRFADGLAEIARMFELQAAGRGLAFRFAVDGRLPAVV 862 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ADEK +RQ+++NLL NA+KFT G+V + V I+D GPG+ E+ V Sbjct: 863 RADEKRLRQILINLLGNAIKFTQA-GQVTLRVAHQRE-MARFEIEDTGPGMTADELARVF 920 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F +GS A + GLGL IA+ + GG+ + S+ G L V Sbjct: 921 EPFERGSAASGQSVGSTGLGLTIARMLCELMGGEMTVASEPGRGTTFRIRLFVPEVAVAA 980 Query: 482 PEDN 485 PE + Sbjct: 981 PEVD 984 >gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 352 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 8/294 (2%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSC-----QAEKDDLIAELEVAKSLSDETRKR 241 ++ A ++ L+ + + + + + L E + LI ++ ++ + Sbjct: 57 VAAAYLIMPRLALARELLRQIRRRSFENLELAHVPQGDELNSLIWQVYRTGRTLEKEIEE 116 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + + FL ++SHEL+TP+ +I GF+E + P + T + ++ I R+ L Sbjct: 117 LKRMENYRREFLGNVSHELKTPIFSIRGFTETLLE--ADPGDEATRRAFLEKILRNADRL 174 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 NL+ ++ ++SR+E G +L L +VRE + ++ A + + + + +L V Sbjct: 175 ANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSLRCCVPENLPHV 234 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + +RQV++NL+ NA+K+ GG V V + +++ DNG GIA IP + Sbjct: 235 LGDRERLRQVLINLVDNAIKYNNPGGFVEVRL-QEQDGSVRVAVVDNGIGIAPQHIPRLT 293 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + + + G GLGL I + I+ H + I S +G LP Sbjct: 294 ERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFRLPVA 347 >gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1] gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1] Length = 339 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK F++++SHEL+TP+ + G E +E E + +T ++++ + + +LIN Sbjct: 114 QAKKDFVSNVSHELKTPIAVMKGIVETLEQE----EDVQTIRKFLNMAKKRIDQMDSLIN 169 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++L L+++E+ +L+ + L IV L+ ++EKNI++ I + D+K Sbjct: 170 DLLILAKLESKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLINDIPEGFL-IDVDQK 228 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+ NA+K+ G V V+ I++ D G GI + P + F + Sbjct: 229 KFDILLKNLIENAIKYNKPEGSVTVSAER-KDGEILINVTDTGIGIPKESQPLIFERFYR 287 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + G GLGL I + I H G+ ++S+ G +P R Sbjct: 288 VDKSRSRNVGGTGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIPERR 337 >gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010] gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010] Length = 929 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 10/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I + ++A+ +++AE+ N+AKS+FLA+MSHELRTPLN ++G ++ ++ Sbjct: 267 EDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNLLAATSL--- 323 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N + S + L L+N++LDLS+IE+G+ EL L +++ E + R Sbjct: 324 -NARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAEVARGMAGR 382 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A+EK +E+ S V D +RQ++ NL+ NA+KFT G + V + Sbjct: 383 AEEKGLELLCPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEK-GSITVDMTVIKKTMP 441 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 SI D G GI+E + + F Q + + G GLGL I + ++ GG+ Sbjct: 442 EATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGRIG 501 Query: 458 IRSKLREGVEVIAIL 472 + S L +G + Sbjct: 502 VSSTLGQGSTFWFEI 516 >gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1167 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 131/251 (52%), Gaps = 8/251 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 L+ ++ AE+ + AKSRFLA++ HE+RTP+ +LG SE++ + P+ Sbjct: 778 RRRQQWQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPV---- 833 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y G I ++G HLL L+N+ LDL+RIEAGR EL L ++ + +++Q A+++ Sbjct: 834 QRSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQR 893 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYIS 404 +E + DP SV DE +RQ++LNLL NA+KFT G V + V G G Sbjct: 894 RLEFQRGNDPQGPISVSGDEMRVRQILLNLLGNAIKFTER-GHVGLAVRLEDNGGGVCFE 952 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D+GPGI + + F Q S G GLGL I Q + GG+ + S Sbjct: 953 VYDSGPGINAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPG 1012 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 1013 KGARFRVRLPL 1023 >gi|160937422|ref|ZP_02084783.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC BAA-613] gi|158439491|gb|EDP17241.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC BAA-613] Length = 1114 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 10/307 (3%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L +S + + + + D+ E E +S A + Sbjct: 544 MLGDGRYHWVSMQIIHVDNPYSGDKLAILISRRIDEQRYEEEQKRSALQSALDNARAASE 603 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSH++RTP+NAI+G + + + E E + I S +HLL+LIN+ Sbjct: 604 AKSQFLSNMSHDIRTPMNAIVGMTAIASTRL---DDRERVMECLKKISLSSKHLLSLIND 660 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEK 366 +LD+S+IE+G+ + E +L ++V E +++ +A+ K++E+ + V D Sbjct: 661 VLDMSKIESGKLSIREEPFNLAELVTESAELVRPQAEAKHLEMDVHLKGLKNEEVVGDSL 720 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVL 421 +RQ+ +N+LSNA K+T GG VHV V G D G G++ + + Sbjct: 721 RIRQIYINILSNAAKYTPEGGSVHVEVRQEQGAGRGYGRYVFRCADTGIGMSSEFMSKLF 780 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + + S G GLG+ I ++++ G + S+ REG LP + + Sbjct: 781 QPFERAQDSTNSRVTGTGLGMAITKNLIDLMNGDIRVESRPREGSVFTVALPL-QFQDAA 839 Query: 482 PEDNHES 488 PE E Sbjct: 840 PEAVPEE 846 >gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1] gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1] Length = 889 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 8/251 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++AE+ N AKS FL+ MSHE+RTP+N I+G +I ++ +G ++ ++ I Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ S +HLL LIN++LD+S+IE+GR E+ + ++ +A++K + Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 + ++ D + Q+++NLLSNA+KFT GG + + + + Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKFEVS 519 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E + F Q I G GLGL I++ G+ + S++ +G Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579 Query: 467 EVIAILPNTRV 477 +P RV Sbjct: 580 TFTLTMPFGRV 590 >gi|225028824|ref|ZP_03718016.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353] gi|224953845|gb|EEG35054.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353] Length = 639 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 7/249 (2%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + + R+ A E N AKS FLA+MSHE+RTP+N +LG +E+I E+ + Sbjct: 186 YKKQQVFLMQAREEAMEANRAKSTFLANMSHEIRTPINVMLGMNEMILRES----ESREV 241 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y + ++G +LL+LIN ILD++RIE+ + ++ E SL +V+E ++ +A+ KN Sbjct: 242 VQYAKSVEKAGNYLLSLINNILDITRIESKKLDIIEEKFSLRQLVQEVCLIGAKQAEAKN 301 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +E ++ +L + D ++QVILNL++NAVK+T G+V + V + S+K Sbjct: 302 LEFVVDVEETLPKYLEGDALHIKQVILNLINNAVKYTKK-GKVFLKVCQEEKQ-ISFSVK 359 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + ++ + F + I +G GLGL IA+ + GG S +G Sbjct: 360 DTGIGIKKEDMEALFDMFMRADIKRHRNIEGSGLGLTIAKELCEQMGGHIQAESIYGKGS 419 Query: 467 EVIAILPNT 475 P Sbjct: 420 NFTVYFPLK 428 >gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 882 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + DI S LL L+N+ILDLS+IE+GR ELS + ++V + +I+ Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D ++ V D+ ++Q+I NL+SNAVKFT G + V V + Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEA 528 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 IKD+G GI ++ T+ F Q + G GLGL I + +++ G Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S G + Sbjct: 589 GKLVATSTKGVGTCFGFSI 607 >gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 672 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 8/253 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + +AE N AKS FL +MSH++RTP+NAI+G++E+ + Sbjct: 279 KQEEELREAKLKAECANKAKSSFLYNMSHDIRTPMNAIIGYAELASRHL---QETDKLGR 335 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ +I G+ LL+++ +LDL+RIE + E+ + ++ + C+IM Q +A+ KN Sbjct: 336 YLEEIQICGKELLSMLGNVLDLARIENNKVEIECTVSNVHECFENCVIMFQQQAESKNQT 395 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYIS 404 + V+ D + +V LN++SNA+K+T GGR+ + IS Sbjct: 396 LSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGRISCNVVQKSCEKEDWCNMIIS 455 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I DNG G++E + +F + S +G G+G+ I + ++ G ++SK + Sbjct: 456 ITDNGIGMSEEFQKRIFETFERERNTTSSHIEGSGIGMGITKKLVELMDGTIEVKSKQGK 515 Query: 465 GVEVIAILPNTRV 477 G +P + Sbjct: 516 GSTFTVTIPCRKA 528 >gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 921 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 16/364 (4%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 E+L AT+ + ++ + + P + + + +H+ Sbjct: 317 FRVHREHLPPILRATIEQGVIVAGPIDQLFPPGTRAHTLLASNGVQSMLGLGLHIAPHWQ 376 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAEEENLA 248 + A + +++L E I + E+A +L AE A Sbjct: 377 GALAAGD----NQADRIWDDATLRLLRTGLEMIKAFIQQWEMANALRAR-NDAAEAATRA 431 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTPLNA++G + +++ + ++ + ++ I G+ LL +I++I Sbjct: 432 KSAFLANMSHEIRTPLNAVIGMAALLQESRL----DQEQRIFVDTIRTGGEALLAVISDI 487 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD SRIE+G+ EL +A L ++ + ++ A KN+ + I P + V D Sbjct: 488 LDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCHIAPDVPQIVQGDAAR 547 Query: 368 MRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTS 423 +RQ++LNLL NAVKFT+ G V + ++D G G++ ++ V Sbjct: 548 LRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDTGIGMSAEQLERVFAP 607 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IP 482 F Q + G GLGL I+Q ++ GG S L G LP T +P Sbjct: 608 FVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSSLGHGSIFSLNLPFTHAHPADLP 667 Query: 483 EDNH 486 + + Sbjct: 668 QPSP 671 Score = 39.1 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 89/326 (27%), Gaps = 50/326 (15%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96 + + ++ +L+ + W Q TL V+A L+ Sbjct: 21 RKQIVALLMRLFIVVIIPMMLVNGLMSIWLGQWQFVLYHVSSTLLVFAVVLAHRTPYQLR 80 Query: 97 DIKIGEVYVWRIWLLVGQI-AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155 + + ++ V G+ +L L S + + + + Sbjct: 81 GVLLVSYFLLTTLGGVYVFGLFGIAPGILFLTTVLAVLLLGQRAAYSVIAIGVVGVLIIL 140 Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 P+ A + + ++ +L S I L ++ L Sbjct: 141 TSFRLGIRPYPLAPLDAA-------TTWPMILNNLILLGGVSSLLVIIIGSLLRAYQTSL 193 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + +A+LE + +++ E N A+ ++R I +E Sbjct: 194 EA---TRNALAQLEQTNARLEQSLITNSELNQ------ANA--DMR-----IRQATEAAL 237 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E + Y + R + LL G + + V++ Sbjct: 238 SEQL---------RYAETLARCSRILLV------------QGADAPAWQPV-----VQQA 271 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSV 361 + L ++ + P + V Sbjct: 272 VTTLYSALNCSHLALHIFPRPDAAEV 297 >gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 1172 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] Length = 441 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ + + I + I+ + +S + H+ + Sbjct: 132 LIYDMGLILAPLALVMILLTIWIGRKIIIA----ITKPISQMERVANHMATGDFSERITV 187 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + ++ E E+ + FLA++SHELRTPL+ I G+SE I Sbjct: 188 SSEDEIGRLGKAFNKMA----HSLETEDAKRKEFLANVSHELRTPLSYIKGYSEAILDGV 243 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E +++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 244 AKG---EQQSKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLET 300 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I + +DP + V DE M+QV+ NLL NA+++T G + + + Sbjct: 301 YELKWTEKQLRISKDLDPDII-VMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLE-KKD 358 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + I+D G GI + + F + A G GLGL I + I+ H G++ + Sbjct: 359 NSCELRIEDTGIGIDSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQV 418 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 419 ESEKGKGTTVIITL 432 >gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 777 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + +RA E + KS F+A+MSHELRTP+N ILG ++++ L + Sbjct: 378 RDITNRKRLEQNLSFALERALEASRLKSEFIATMSHELRTPMNGILGMADILLLTEL--- 434 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E+ K+ I + GQ+L+++I++ILD S+IE ++L + + IV E + + + Sbjct: 435 -SESQKDSAKLIKKCGQNLMSIISDILDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPK 493 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+ K I + +ID S + + D K +RQV+ NL+ NA+KFT G V V + Sbjct: 494 AESKGISLRCEIDEHCSDIFYGDSKRIRQVLTNLVGNAIKFTEE-GYVRVRADFLGEGRM 552 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI E V +F Q + G GLGL I + ++ GG S+ Sbjct: 553 RIEVEDTGVGIDEVFQSKVFQAFTQEDGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQ 612 Query: 462 LREGVEVIAIL 472 + G + Sbjct: 613 VGVGSRFWFEI 623 >gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC 17978] Length = 906 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 214 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 273 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 274 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 330 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 331 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 390 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 391 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 449 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ ++ GQ +G F ++ HE Sbjct: 450 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 499 >gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 660 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 9/297 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + +L L Y Y + A+ + +LE+++ ++RAEE Sbjct: 370 FILFTFLVLIGGLFISLYYYYRTKILKNHLEKTTAQLREDKKKLELSEIALRHAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS ++ + KEY I + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV---EATDEQKEYADIIQTNSELLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ L++ + I + + + + ++I++ ++ ++ D Sbjct: 487 ISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR-KNRTRDIDVRLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTS 423 ++QVI+NLL+NA+KFT GG + + S+ D G GI E + V Sbjct: 546 PLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGSGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + QG GLGL I + + GG I + G + P + + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHPIKKRESE 658 >gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 762 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 29/315 (9%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + +A M+ ++ F I Y L K N ++LS E A+ Sbjct: 304 VAGLSWVLMQNAVLMATMIIAVIAIFFSIYYQLVKRNTRLLS---------DEKNRAERA 354 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 S+E R+ +LAKS FL+ MSHE+RTP+N I+G + + + E + + I Sbjct: 355 SEEARR----ASLAKSEFLSRMSHEIRTPMNGIMGMTAIALEN---AHDEEKARACLEKI 407 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + +HL+ LIN+ILD+S+IE+G+ ++ V + +A E+ I + Sbjct: 408 DVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRYKTEE 467 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQY 402 +L S+ D + Q++ NL+ NA KFT G V + + Sbjct: 468 VGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDAIWLR 527 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GI + +SF QG + G GLGL I + GG+ + S++ Sbjct: 528 FSVTDTGCGIKPENRERIFSSFEQGDESSCRR-GGTGLGLAITKRFTEMMGGRISLSSEV 586 Query: 463 REGVEVIAILPNTRV 477 +G +P R Sbjct: 587 GKGSTFTVDVPFGRA 601 >gi|300788622|ref|YP_003768913.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299798136|gb|ADJ48511.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1546 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 111/503 (22%), Positives = 193/503 (38%), Gaps = 38/503 (7%) Query: 10 KDVGLLISPTGDHLGLEYPSKMDFD-REIITLHVESLFRVSPILPLFVLLVANIGTWFTQ 68 D+ I+ +L + + D + + + L L+ + + Sbjct: 873 ADLKDNINQMIANLKETTRTNREQDWLKTNLAQLSGRMQGHRDLASVAALILSELAPLVR 932 Query: 69 NPIFPMWSL-----------ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117 + A A G + + IG+ V + +LV Sbjct: 933 AQQGAFFLARDDDRDGTVLECIAAYGLAQSRAGLRFAMGESLIGQAAVDQRTVLVHNAPP 992 Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 L L + +L L +++++ F + L + ++ Sbjct: 993 EYALISSGLGSAAPVNLIVLPVLFQGEVLGVLELASVNEFSTVHQDLLEQLRHTIGVNVN 1052 Query: 178 AIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKILSCQAEKDDLIAELEVA 231 I+S + L A L +SN ++ A ++EV Sbjct: 1053 TILSNSRTEALLTESQRLAQELRARSEQLQAQQGELRRSNTELAEKAALLAQQNRDIEVK 1112 Query: 232 KSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 S ++ R+ EE + K+ F+A+MSHELRTPLN+ L ++++ G L Sbjct: 1113 NSEIEQARQELEERAGQLTVASQYKTEFMANMSHELRTPLNSALILAKLLSENPEGNLT- 1171 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++ I+ +G L LIN+ILDL+++EAGR ++ S I+L ++V + + Sbjct: 1172 EKQIQFAKTIYAAGSDLQQLINDILDLAKVEAGRLDMQMSDITLPELVDYVESLCRPLTA 1231 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-----------RVHVT 392 +K +E IDP + SV DE ++Q++ NLLSNA KFT GG V Sbjct: 1232 DKGLEFAVHIDPPVPGSVHTDEHRLQQILRNLLSNAAKFTDEGGVRLHIRSADPAEVEQE 1291 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + +++D G GI E ++ + +F Q G GLGL I+Q + Sbjct: 1292 ALRNAPGIIAFAVEDTGIGIPEEKLAVIFEAFRQADGTTSRKYGGTGLGLNISQQLTELL 1351 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG+ + S+ G LP Sbjct: 1352 GGELRVVSEPGVGSTFTLYLPVA 1374 >gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] Length = 654 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ L A S E ++AE+ N KS FLA+MSHE+RTPLNAI+G S ++ N Sbjct: 411 ISILRKAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNML----PHVENR 466 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY I + LL LIN+ILDLS+IEAG ++ + I + + E +QLR + Sbjct: 467 EEMSEYADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLR 526 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ +++ D+ + Q++ N + NA+KFT + G + + Y Sbjct: 527 HNNVTFTFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEV-GTIRMGYRLLDSETIYFY 585 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G++ + V F + S QG GLGL I +I+ GG+ + SK + Sbjct: 586 VSDTGCGMSSEQCIHVFERFVK----YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENK 641 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 642 GATFWFTLPYRQ 653 >gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 633 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 97/452 (21%), Positives = 182/452 (40%), Gaps = 47/452 (10%) Query: 56 VLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQI 115 L+A + W + L + + ++Y + V + Sbjct: 34 YFLIAFFFAGLYFATYYGTWDIAIGVGGTL--LLAYYSVKLLLPSSDLYQY-----VLSV 86 Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI---------ALSISALSNFMLPYAVFLS 166 +G+ G + + SA L+ L L + L Y + Sbjct: 87 CLGIFMAQFIFQMHGLFEMHFFAFIGSAILITYQKWKLQIPILVFVVLHHLGLNYLQSIG 146 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI- 225 + V V+ I L G++ + Y + + E+ Sbjct: 147 YESVYFTPLDYLQFETMVIHIILTGVIYFVCGLWAYHLNKYNVAQHGMFLHLEERKKYEQ 206 Query: 226 --------------------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 E E A+ +++ ++ AE AKS FLA+MSHE+RTP+N Sbjct: 207 TLEELNEELLRSSHEAVLAWEEAEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMN 266 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G + +++ + + +Y+ I+ S + LL++IN++LD S+IE+G +L E Sbjct: 267 GVMGMTSLLKNTPL----SAEQADYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERT 322 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L + + I + ++ + + ++DP+L + D+ +RQV++NLL+NA+KFT Sbjct: 323 FELKKCILDVIDLFAEKSLMSGVALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTT 382 Query: 385 IGGRVHVTVG--WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 + G V + VG T I + D G GI + +I + +F Q G GL Sbjct: 383 V-GHVFLKVGLLRTVENRITIGFEVHDTGIGIPKNKISHLFKAFSQLDSTSHRKFGGSGL 441 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I++ +++ G ++SK +G + Sbjct: 442 GLIISEKLVSLMNGSIEVKSKEGKGSIFSFTI 473 >gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] Length = 657 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 3/333 (0%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L + ++ + L + ++ ++ ++ + ML + S + I Sbjct: 311 VLFVLVAAAFFICAALLGRKLTAMITRPISDLQDISRTITKGELPSSDMLRSRSSVPSEI 370 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 V + L ++ + T N KS+FLA++SHELRTP Sbjct: 371 VSLADDMYVMARKLTDKNQRLEEKVSARTAQLANTVDELRAANRHKSQFLANISHELRTP 430 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+I+GF+ +++ G L N T Y I SG HLL+LIN+IL L +++ +L Sbjct: 431 LNSIIGFASLLQENVAGDL-NATQTRYAEIIIESGGHLLDLINDILQLVKLDTSVDKLKL 489 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVK 381 S +S+I+ +R + +++ A E+ + + L + + DE+ + Q++LNLLSNAVK Sbjct: 490 SRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDGYTAYWDEQKVHQILLNLLSNAVK 549 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 F+ GGR+ V +I + DNG GI+ V +F Q + +G GLG Sbjct: 550 FSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKERVFLAFEQADNSYTRIYKGAGLG 609 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 L I + ++ H G+ + G++ +LP Sbjct: 610 LAITKDLVEMHSGRIWLEDAPGGGLDACVVLPL 642 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 15/298 (5%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + L + +++ ++ EL A+ + E + KS FLA+MSHE Sbjct: 631 LRSVNDKLGERAMELEEQKSAIRRKNKELLRAQEQLKLKAQELESASRYKSEFLANMSHE 690 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL S+++ G L+ E I+ SG LL LINEILDLS++EAG+ Sbjct: 691 LRTPLNSILILSQLLSHNKEGNLS-PKQTEAASAINSSGADLLRLINEILDLSKVEAGKV 749 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 EL + L ++ + + + A EK + + DP+L + D ++QV+ NLLSN Sbjct: 750 ELHLEEMPLTSMISDLQRVFKGVAVEKGVAFLVEQDPALPETMLTDTHRLQQVLRNLLSN 809 Query: 379 AVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 A KFT G V +++ ++ I++ D G GI E + T+ +F Q Sbjct: 810 AFKFT-DHGSVTLSISRPGPEVDLPEGIPSAEEAICIAVTDMGIGIPEDKQGTIFEAFRQ 868 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + G GLGL I++ + GG+ +RS+ +G ILP + ++ Sbjct: 869 ADGSTSRKYGGTGLGLSISRELTKLLGGEIRLRSQEGKGSTFSLILPLRHHADAPTDE 926 >gi|167772720|ref|ZP_02444773.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM 17241] gi|167665198|gb|EDS09328.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM 17241] Length = 1108 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 8/275 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 KI+ + D E E K + A + N AKS F++ MSH++RTP+NAI+G + Sbjct: 557 KIMLYMRDIDQTRREDERNKRALQDALVLARDANRAKSDFISRMSHDIRTPMNAIIGMTA 616 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + N + + I S + LL+LIN+ILD+S+IE+G+ +++ + ++ Sbjct: 617 IAAANLG---NEAKISDCLQKIGVSAKFLLSLINDILDMSKIESGKVVIAQCEFNFHRMI 673 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +A +K++ ++ + + DE + Q+++NLLSNA+KFT GGRV + Sbjct: 674 QGISSVFGQQAAQKHLAFNVYLEENFPLTCTGDELRINQILMNLLSNAIKFTPEGGRVSL 733 Query: 392 TVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + + D G GI+ + F Q S +G GLG+ I Q+ Sbjct: 734 RIERKKAKEHITLVRFEVADTGVGISPEFQKRIFDPFEQESAGSGRVFEGTGLGMTITQN 793 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 ++A G+ + S+ +G I LP P Sbjct: 794 LVALMDGRISLESEPGKGSRFIVELPLELGEAVEP 828 >gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1125 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 16/253 (6%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ + E + + I SG+ Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRR--DHDPEDQRR-LELIRVSGES 638 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N++LD+S+IEAG+ EL +L ++ + + +++ A + + + +IDP L + Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410 V D +RQV+ NLL+NAVKFT G V +T + I D G Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPA-GSVVLTARYEGSVPGADGGTAEALRFEISDTGI 757 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I ++ GG + S+ G Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817 Query: 471 I--LPNTRVLNFI 481 LP Sbjct: 818 TLALPRATTPPAA 830 >gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 568 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 137/269 (50%), Gaps = 8/269 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 F+ + EL+ + E+ N K+ FL++MSHE+RTP+ AI Sbjct: 126 FRLQDQQTEYLERLKLTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAI 185 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G+SEV++ + + I I R+G HLL +IN+ILD+S+IE G+ EL A Sbjct: 186 IGYSEVLKESVI----QAEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACF 241 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 + IV+E I + + +A +K + + I S+ + +D ++QV+ NL+SNAVKFT G Sbjct: 242 PLQIVQEVIALHRPKAVQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNG 301 Query: 387 G-RVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 R+ + S R ++ D G GI++ + + F Q ++ G GLGL Sbjct: 302 FVRIEIRTFNRSNFERLLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLT 361 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++Q ++ GG+ ++S + +G L Sbjct: 362 LSQKLVQLLGGKLSVQSTVNQGSIFSVTL 390 >gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] Length = 1471 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 20/290 (6%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 L+ L + +E +++AE N AKS+FL+ ++HELR+PLN ILGF+ Sbjct: 965 QAELALDQLNQSLEERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSPLNIILGFT 1024 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++E + ++ + I +GQ LL LINE+LDL ++EA R EL+ L + Sbjct: 1025 QLLER---CDNLDSQQQQQVNLIFNNGQQLLKLINELLDLGKVEANRMELNVEWFDLYCL 1081 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + E M +L Q K +E +D + + D+ +RQV++NL++NA+KFT + G++ Sbjct: 1082 MDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFTDV-GQIC 1140 Query: 391 VTV---------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 + V ++D G GI E+ + F QG S QG GLG Sbjct: 1141 LRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQ-QGTGLG 1199 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHE 487 L I + + GG+ + S L G + + P R +P+ E Sbjct: 1200 LAICRYFVEMMGGEIGVNSTLGAGTRIHFSIVSNSPVKRSA-TLPQLRQE 1248 >gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1199 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 135/249 (54%), Gaps = 13/249 (5%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ L+++ ++ AK +FLA+MSHE+RTP+N ++G + +++ + N ++ Sbjct: 677 TARKLTEQA---LQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQESGL----NPEQQQ 729 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I SG LL++IN+ILD S++EAGR EL ++ + I+ E I ++ +AQ K + Sbjct: 730 YVEVIRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLA 789 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----IS 404 + + ++ + + D +RQ++LNLL NA+KFT G V + G+ + Sbjct: 790 LERHLELAQPCYLKGDVTRLRQILLNLLVNAIKFT-ESGSVTLQARVEPGQDRRSMLLCQ 848 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E ++ T+ F Q +I G GLGL I++ + G+ + S + Sbjct: 849 VRDTGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQ 908 Query: 465 GVEVIAILP 473 G +P Sbjct: 909 GTTFRLSIP 917 >gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1] gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 535 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 6/265 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 K+L+ E + ++K AEE KSRFLA+MSHE+RTPLNAI GF Sbjct: 129 EKVLADAVEIILKRRQYRQMHEDLARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFI 188 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++E +ET +Y+ + S + LL +IN+ILD+S+IE+G + + + Sbjct: 189 KLLEEN----EKDETKLKYLKIVENSSESLLQIINDILDISKIESGNLMIEPYNFNPYED 244 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + Q RA EKNI + + ++ + + D ++Q+ NLLSNA+KFT G V Sbjct: 245 LIMIAELFQTRAAEKNIIFQIRYNNNMPKILFGDALRIKQIFTNLLSNAIKFTPEGSVVK 304 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + +G+ I +KD G GI+E + + F Q + G GLGL I+ + Sbjct: 305 CIIWYKNGQ-LNIRVKDYGIGISEKKQKAIFEPFMQADSSTVRNYGGTGLGLSISLELTR 363 Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475 GG ++S+ +G +P Sbjct: 364 MLGGTLTLKSEKEKGSIFTLSIPLE 388 >gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] Length = 1053 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 8/318 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L + L + + + T I + + Sbjct: 206 LTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 A + + A+ +E + +AE+ KS FLA+MSHE+RTP+NAI+G S + Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P ++Y+ IH S LL +IN+ILD S+IEAG+ + SL +++ Sbjct: 326 TELTP----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 ++ +A +K +E+ + + + D + QV++NL++NAVKFT G V V VG Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 395 WTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + D G G+ E + + +F Q + G GLGL I++ ++ Sbjct: 442 ERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 453 GGQFLIRSKLREGVEVIA 470 G+ + S+ G Sbjct: 502 EGEISVTSQPDMGSCFTF 519 >gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1501 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 6/341 (1%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 ++ A + +A + + + S A + + Sbjct: 1031 TVAEFAALIHPEDRERVAAAIQRALAGESSYELEFRAVQPSGAIRWLSTTGGVIFDQQGQ 1090 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + ++ + AE E R+ AE N K FLA +SHELR+PLN I Sbjct: 1091 PVRMLGATNDITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHELRSPLNPI 1150 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG++++++ P + ++ + I R+ + LI ++LD+SRI G+ L+ S ++ Sbjct: 1151 LGWTKLLQTRPFDP---QRTQQALQTIERNAKLQTQLIEDLLDISRILQGKMVLNTSPVN 1207 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 LI + + ++L A+ K IE+ + P++ V+ D ++Q++ NLL+NAVKFT GG Sbjct: 1208 LITTIEAALDTVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAVKFTPAGG 1267 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V + + I ++D G GI+ +P V F Q G+GLGL I + Sbjct: 1268 KVLIRLEQV-DSFAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGLGLAIVRY 1326 Query: 448 IMANHGGQFLIRSK-LREGVEVIAILPN-TRVLNFIPEDNH 486 + HGG + S+ +G LP L P + Sbjct: 1327 LTEQHGGTVEVESRGEDQGASFTVHLPLMASDLTPDPAEQP 1367 >gi|77362202|ref|YP_341776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis TAC125] Length = 1585 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 131/274 (47%), Gaps = 12/274 (4%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELR 261 +S L A + K ++E + A+E +AKS+FLA+MSHE+R Sbjct: 1022 RQWTQSEETYLRSLATLVGSTLVSQRRKQTAEELKIALVLAKEAGVAKSQFLATMSHEIR 1081 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N +LG E+I+LE + + S LL +IN+ILD S+ EAG+ EL Sbjct: 1082 TPMNGVLGMLELIQLEQLPKPIETK----VAIAKTSAHSLLGVINDILDFSKAEAGKIEL 1137 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAV 380 + D++ E L AQ K IEI + S + D +RQV+ NLLSNAV Sbjct: 1138 ESINFNARDLIGEVAAAQALTAQNKGIEIILDLVALEPSQLSGDPGRIRQVLTNLLSNAV 1197 Query: 381 KFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KFT G V V+ Q +S+KD+G GI++ + + F Q + G Sbjct: 1198 KFTNE-GEVVVSASIERIEAQLMLQVSVKDSGIGISKEKQQQLFAPFMQVDASTTREYGG 1256 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ + GG I+S +G E I Sbjct: 1257 TGLGLAISKQLCELMGGAITIKSNAGQGSEFIVT 1290 >gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 638R] Length = 1015 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 628 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 687 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I + LL LI++ILDLS+IEAG E S I L +++ L+L+ Sbjct: 688 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 743 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 + ++++ + V ++ + Q+I+NL++NA+KFT+ G + G+ G+ Sbjct: 744 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGS---IRFGYEHRGKEL 800 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + + ++ F + S QG GLGL I ++++ + GG + S+ Sbjct: 801 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 856 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 857 EGKGSTFWFSLP 868 >gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 862 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + + Sbjct: 616 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTS 673 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++IG I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 674 EEITQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMP 733 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQ 401 + + + + D ++QV+ NL++NA KFT+ G +T G+ Sbjct: 734 PGVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYT 790 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I ++D G GI+E I + F + QG GLGL I Q+I+ G + S+ Sbjct: 791 RIFVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIIERLNGTISVTSE 846 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 847 VGKGTRFTVRLP 858 >gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 1136 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 161/370 (43%), Gaps = 5/370 (1%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 WT++ + T + + L+ A++++ L+ ++ L+ ++ + A+ Sbjct: 310 WTVVAEADSDTAFATSRQLRNALFLIGAVAVAGLAVLSFLFSNALTRPIRRISEAASAVA 369 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + + + + + ++ L +K+ AEL+ E Sbjct: 370 TGSLNEALPEYDHPVEYARLSRAVNQMRRALRDQLDMIRDKN---AELQENLRQIGEKNA 426 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + EE + K RFLA+ SHELRTPLN I+G E +E MG + + I S + Sbjct: 427 KLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDML-PAQASQLRLITFSARR 485 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L++++LD+ RI GR L + + +R + +LQ Q + + L + Sbjct: 486 LSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTFQVDPAKFHLDLPEDLPA 545 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD Q++ NLLSNAVK+ G VH+T + ++I+D+GPGIA + + Sbjct: 546 VTADPVRFEQILFNLLSNAVKYGG-GSEVHITAERRASGQMALAIRDHGPGIAADSMERI 604 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 Q G GLGL IA+ + G + S EG E +LP + + Sbjct: 605 FHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSSTPGEGSEFRVLLPQSDLPAI 664 Query: 481 IPEDNHESTQ 490 P + TQ Sbjct: 665 APLEEWLPTQ 674 >gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 1302 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 7/271 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L E + + R+ AE N K FLA +SHELR+PLN ILG+S++++ + Sbjct: 908 QKQLELERDRLLAQEQAAREVAERANRIKDEFLAVLSHELRSPLNPILGWSQLLQ---VR 964 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L+ E + I R+ + LI+++LD+++I G+ L+ ++++L + I ++ Sbjct: 965 KLDEAQTAEALHTIERNAKLQTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVK 1024 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A+ K+I + ++ P++ V DE ++Q++ NLLSN +KFT GG+V + + G Sbjct: 1025 QTAKSKSIALESQL-PNIGQVSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHLKRV-GSY 1082 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I +KD G GI+ +P + SF Q +I G+GLGL I ++ HGG S Sbjct: 1083 AEILVKDTGKGISPDFLPHIFESFRQEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAES 1142 Query: 461 K-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP P+ + E Q Sbjct: 1143 PGEGLGATFTVQLPL-LDAESEPQLSRELPQ 1172 >gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1127 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 7/343 (2%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++ LS+ AL ++ + + S V ++ ++A S++ + Sbjct: 571 VVTLSLCALIATVMGMVYLQETALSASTDAFDMLRSAFVKVFAVLLLIAAVCSWWVVLGS 630 Query: 206 HLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + Q + I + + ++ AE N AK+R++A M+HELRTPL Sbjct: 631 ESRRMAQDESNRQNQLLSREIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPL 690 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+ILG+S+++ +E + I RSG+HLL L++ +LDL+RIEAGR L + Sbjct: 691 NSILGYSQILLKSEALANTP---REAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPT 747 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 + L D + + M++ +A+ K+++ + V AD K +RQ+I+NLLSNAV FT Sbjct: 748 PLPLPDFLDGLVNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFT 807 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G V + V + D G GIA + + F +G+ + E G GLGL Sbjct: 808 DT-GSVTLHVDCRRE-VIRFDVVDTGIGIAPQDQQRIFLPFERGAAGRRRGEPGTGLGLT 865 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I + A GG ++S+ +G L + + P + Sbjct: 866 ITGLLTALMGGDLSLQSEQGKGSTFSVRLYLREIDDPGPLADP 908 >gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 590 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 4/238 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + F++S+SHELRTPL +I G++E + M + E ++ I + + Sbjct: 356 RLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLEGAM--HDPEHATAFLQIILKESEQ 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+N++LDLSRIE+G+ E + + L ++ + + ML ++K I + + + Sbjct: 414 LTALVNDVLDLSRIESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPE 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V AD + V+ NLL NAVK+ GRV ++V T + I+DNG GIA ++ Sbjct: 474 VTADAGYLEIVVRNLLDNAVKYVDDRNGRVRISVFRTGMD-VRMEIEDNGIGIAPADLDR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F + A G GLGL I + I+ H G +RS++ +G LP V Sbjct: 533 IFERFYRVDKARSRTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLPAVSV 590 >gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1098 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 111/472 (23%), Positives = 193/472 (40%), Gaps = 36/472 (7%) Query: 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 D I +E L ++ + N+ +F+ ++ ++ +A Sbjct: 184 DAFIEKSQLEYALLGIFFGILSIMALYNLFLFFSLRHWSYLFYVLFIASNIFIHLSFTGT 243 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT-------------------WTP 134 I + + W +V + I + L + Sbjct: 244 AYQYIWPEQSW-WNNRAIVLFMLISNIFGYLFAKSFLEMRKVIPGLNSIFNYLIFCNFVI 302 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFL-----SFFPVVVALSTQAIMSMHVLDISL 189 +L Y + L + IS+ +L + + P L I + + L Sbjct: 303 IFLLFYSYSLALNLVVISSGVTVLLMIWAGISCYRKGYQPAKYFLLAWHISFIGTIISLL 362 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---LIAELEVAKSLSDETRKRAEE-- 244 A + F T + + S +L A D + E E A+ ++ RA E Sbjct: 363 ADAGFLPIYFVTKYAWQITASIEFLLFSFALADKINMMKKEKEQAEQEVIKSNLRALENL 422 Query: 245 --ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + K FLA SHELRTPL+ ++G +E + G + ++ K+++ I SG+ L Sbjct: 423 KKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKMT-QSMKKHLSMIISSGKRLS 481 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +LIN+ILD S ++ L + L ++V IIM Q EKNI I +ID ++ V Sbjct: 482 HLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSLLNEKNIRIINEIDTNIRPVL 541 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE ++QV NL+ NA+K+T G V ++ G+ + I D+G GI+ +I T+ Sbjct: 542 GDENRLQQVFFNLIGNAIKYTER-GTVVISAE-EDGKMLQVHITDSGIGISADQIDTIFD 599 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +F +G + G GLGL I + ++ HGG + S+ +G ++P Sbjct: 600 AFNRGGN-NSEEQSGTGLGLNITKKLIEAHGGNISVVSQEGKGSTFSFLIPL 650 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 16/292 (5%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL----- 247 L I + + + D+L ++ E + N Sbjct: 809 LIELSLAVRKIKEQMRELDDVNQRLLQINDELEGKVRERTVALKEVNDELLKANEDLIKL 868 Query: 248 --AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 A++ L+++SHE TP+ + + + + + + Y+ + L LI Sbjct: 869 QNARTHMLSNISHEFGTPVTFLQSYIQSVRAGIIEANDA----HYLKSVENKVNMLNRLI 924 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF----QKIDPSLSSV 361 ++ D+S++E+G L +L + + + + + I + + + Sbjct: 925 EDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRKITLHKPVFTGNEEQDIRI 984 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D M QV N++ NA+K T GG + + V + I IKDNG GI E ++P V Sbjct: 985 DIDNDRMDQVFTNIIYNAIKHTNEGGDIWINVVVKDRQEVMIEIKDNGHGIKESDLPFVF 1044 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F +G I G GLGL I++ I+ +H G+ ++S G LP Sbjct: 1045 ERFFKGEKVINGKI-GTGLGLAISKEIIHHHNGEISVKSTEGNGAIFCISLP 1095 >gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 612 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + +G + E ++ + ++ Sbjct: 372 EKIDAERREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPRFLSVTQNETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + + I + I ++ +E+++E + + V Sbjct: 430 RLVNDLLQLSKFDSKDYQFNREWTNFIRFISLVIDRFEMT-KEQHVEFIRNLPQREIYVE 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG + TV + S+KD G GI + ++ + Sbjct: 489 IDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDEGIGIPKKDMDKIF 548 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G V LP Sbjct: 549 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600 >gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196] gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196] Length = 896 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + +LE+ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E+ + + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S L EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731 >gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 878 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 5/254 (1%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ AE N K FLA +SHELRTPLN ILG+S+++ + +T + I R+ Sbjct: 498 ARQEAEIANQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKF---DQQTTNRALETIERN 554 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + LI ++LD+SRI G+ L+ ++L+ +V + ++L AQ K+I+I D S Sbjct: 555 AKLQTQLIEDLLDVSRILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDAS 614 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V D ++QV+ NLLSNAVKFT GGRV + + + I + D G GI + Sbjct: 615 LGQVMGDPNRLQQVVWNLLSNAVKFTPTGGRVGIRL-MEASNQIQIQVSDTGKGINPDFL 673 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTR 476 P V F Q G+GLGL I + ++ HGG+ S G +P Sbjct: 674 PYVFDYFRQADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQAESPGDGLGATFTVEVPLLV 733 Query: 477 VLNFIPEDNHESTQ 490 + + +ES Sbjct: 734 RSEQVRREENESLD 747 >gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1170 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1364 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 144/323 (44%), Gaps = 13/323 (4%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + ++ + + L ++ L + +++ DLI E ++ Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS-TLRDDHDQVIGYLGVAVDLI-EQKLQ 626 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + A+ N +KS FLA+MSHE+RTP+NAILG +++ + ++ + Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----PGAAQDMV 682 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I RS + LL +IN+ILD S+IEAGR +L + L + +++ K +E+ Sbjct: 683 AKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMI 742 Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISI 405 + P + D + QV++NL+ NA+KFT G V ++V S+ Sbjct: 743 VEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNKFKLLFSV 801 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI++ + + + F Q + G GLGL I++ ++ GG+ + S G Sbjct: 802 RDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRG 861 Query: 466 VEVIAILPNTRVLNFIPEDNHES 488 E ++ + + + S Sbjct: 862 SEFYFVITLEKSAPPQEQRDLPS 884 >gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 614 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 6/292 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +++ + + + + + + + E A R E + K FLA Sbjct: 185 GSVTSVLSLVLDVTERIQAEKALRQSELMVTEERAQALERERAARIELERASRMKDEFLA 244 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +SHELR+PLN ILG+S ++ + P E ++ + I R+ Q LI ++LD+SRI Sbjct: 245 IVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERNAQAQTQLIEDLLDISRI 301 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 G L LI +++ + ++ A K+I+I +++ + V AD + ++QVI N Sbjct: 302 IRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWN 361 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT GGRV + + I + D G GI+ +P V F Q Sbjct: 362 LLSNAVKFTPEGGRVEICLEQVETN-VQIQVIDTGTGISPEFLPYVFDRFRQADATTTRN 420 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI-PED 484 + G+GLGL I ++++ H G+ + S +G LP + + PE+ Sbjct: 421 QGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLPLLATYSTLTPEE 472 >gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500] Length = 878 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 152/398 (38%), Gaps = 38/398 (9%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL--SNFMLPYAVFLSFF 168 + I V T + Y TL AL++++ + +S Sbjct: 310 AMMAILSLPMTASSLFVLRKTGSTHYPGHMLCFTLCFALTMNSYYTGGHQSTLRLLMSTL 369 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNVK--------- 213 P+V AL S+ + L +L ++ Y +S++ Sbjct: 370 PIVSALVIGRRASVQWSFVVLIILLLFFIANLLGYEYVDGIPTITIRSHMNFIIDVTLVL 429 Query: 214 -----ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 L Q D+ E + + A E A+ FLA+MSHE+RTPLN ++ Sbjct: 430 ITMSFTLCYQYFIDEAHRETKTKNLQLTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLI 489 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + ++ P K+ + G LL L+N+ILDLS++EA + + + Sbjct: 490 GMATLLRDSLSLP---PEEKQMAKSVKSCGDILLRLVNDILDLSKLEANQMVVENIGFRV 546 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG 387 D+ E +L +A+E N+ + ++ ++ V + D + QV++NL NA+KFT G Sbjct: 547 KDMAHEICQVLAAQAKEHNLRLQYEVADNVPPVLFGDTGRILQVLMNLTGNAIKFTPE-G 605 Query: 388 RVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 V + + ++D G G+ + +F Q + Sbjct: 606 VVKIIIDLIEDDAEKITFKSDEYNVCFRVQDTGIGVPPESHQKIFEAFVQADPSDSRKYG 665 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL + ++ G+ + + G ILP Sbjct: 666 GSGLGLYLCAKLVKLMRGEIGVYNNQHGGSTFWFILPL 703 >gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] Length = 906 Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 214 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 273 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 274 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 330 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 331 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 390 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 391 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 449 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ ++ GQ +G F ++ HE Sbjct: 450 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 499 >gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1459 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 139/287 (48%), Gaps = 8/287 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + I E+ + E E + + + AE+ + AKS FL+ MSHE+RTP+NA++G + Sbjct: 915 LDITKLVLEQQEKEREAERNRQIIKDALTAAEQASRAKSDFLSRMSHEIRTPMNAVIGMT 974 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 + N + + +G I S ++LL+LIN+ILD+SRIE+G+ + Sbjct: 975 TIAAASL---DNRDKLTDCLGKIGLSSRYLLSLINDILDMSRIESGKVSIINEEFDFRSF 1031 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 V ++ +A+ KNI I+ + D + QV++N+LSNA+KFT VH Sbjct: 1032 VEGISSLIYPQAKNKNIVFDLNIEGVVDERYRGDPLRLNQVLINILSNALKFTPEWRSVH 1091 Query: 391 VTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 +++ T ++D G G+ +G + + F QG +I + G GLGL I+ Sbjct: 1092 LSIRETRRVRDRAYLQFIVRDTGIGMEKGLLERIFEPFEQGGASISHSYGGSGLGLAISS 1151 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 ++++ G + S G E + LP V + P+ + + Sbjct: 1152 NLISLMNGHISVSSTPGVGSEFVVELPLLTVPDNTPKQDVSLEDIRV 1198 >gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 456 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 9/300 (3%) Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 M + +L + L + LS I K + LS L + E + + Sbjct: 160 HFMMVGILSVFLTIITIALLSRIITIPLIRMKQATEKLSKGDFSVHLQVKGEDELAELGK 219 Query: 238 T----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + E ++ FLAS+SHELRTPL + G++++ MG E Y+ Sbjct: 220 AIQTLARDLEYLKKERNEFLASISHELRTPLTYVKGYADIARRPNMG---EEERNRYLSI 276 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ +H+ L+ ++ +L++++ +++ + +L ++ +Q Q K + + Sbjct: 277 IYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYY 336 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 D S+ +V D+K QV++NLL NA+K++ G V + V I + D G GI Sbjct: 337 CDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSIVSIDV-RKEKHHIVIIVSDEGRGIP 394 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++P + F + + G GLGL I + I+ HGG S+ +G +I LP Sbjct: 395 KEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454 >gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1053 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 666 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 725 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I + LL LI++ILDLS+IEAG E S I L +++ L+L+ Sbjct: 726 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 781 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 + ++++ + V ++ + Q+I+NL++NA+KFT+ G + G+ G+ Sbjct: 782 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 838 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + + ++ F + S QG GLGL I ++++ + GG + S+ Sbjct: 839 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 894 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 895 EGKGSTFWFSLP 906 >gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] Length = 729 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 19/297 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 I +++L +A D+ I +K + + RAE + AKS FLA+ Sbjct: 163 RIVRLWNGRAIRLLDQRAPSGDMVSLALDITAEVRSKEVLRRAKHRAEAASRAKSAFLAN 222 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N ++G ++++ + +E Y I S + LL +IN++LD S++E Sbjct: 223 MSHEIRTPMNGVMGMADLLRETDL----DEDQALYATTIRNSAEALLGIINDVLDYSKVE 278 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 A R L L + E I+++Q +A+++ ++++ D L + D +RQV+ N Sbjct: 279 ADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDYDLFLPTRLRGDGGRIRQVLTN 338 Query: 375 LLSNAVKFTAIGGRV--HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+ NAVKFT G + V V +++++D G GIA +I V F Q A Sbjct: 339 LIGNAVKFTPEGHVLIRVVGVSAEGRAEIHVTVEDTGIGIAPDKIGHVFGEFNQVEEAQN 398 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAIL----PNTRVLNFIPE 483 +G GLGL IAQ ++ GG+ + S +G L P + +PE Sbjct: 399 RRFEGTGLGLAIAQKLIRLMGGEIWVESAPGQGSVFGFTITLDIEEPQGQEPCRLPE 455 >gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 761 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 515 IQNIKDTEGVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+ + LL LIN+ILDLSR+E+G+ L ++ E QL Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E +E+ ++ V D ++QV+ N ++NA+KFT G ++ VG+ T G Sbjct: 633 E-GVELRMRVPEIPVIVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I ++D G GI E + V F + QG GLGL I Q I GG+ ++S+ Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744 Query: 462 LREGVEVIAILPNTRV 477 +G LP R+ Sbjct: 745 YGKGSRFTLTLPKERI 760 >gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC 17978] Length = 935 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ ++ GQ +G F ++ HE Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528 >gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1181 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 8/251 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 L+ ++ AE+ + AKSRFLA++ HE+RTP+ +LG SE++ + P+ Sbjct: 792 RRRQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPV---- 847 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y G I ++G HLL L+N+ LDL+RIEAGR EL L ++ + ++Q A+++ Sbjct: 848 QRSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQR 907 Query: 347 NIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYIS 404 + + P SV DE +RQ++LNLL NA+KFT G V + V G Sbjct: 908 QLAFQRGDDPPGPISVSGDEMRVRQILLNLLGNAIKFTER-GHVGLAVRLDDNGAGLCFE 966 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D+GPGI + + F Q S G GLGL I Q + GG+ + S+ Sbjct: 967 VHDSGPGINAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPG 1026 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 1027 KGARFQVRLPL 1037 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 272 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 4/285 (1%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETR-KRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + +L+ + E K + + +R ++ + K FLA+ SHELRTPLN I+G Sbjct: 834 IVLLTWFIHQQRQKVSFERQKVEQERSVVRRLKQLDKLKDEFLANTSHELRTPLNGIVGL 893 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +E + GPL+++T K+ + I SG+ L L++++LD ++++ L++ A+ + Sbjct: 894 AESLMDGVTGPLSHKT-KQNLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHV 952 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 +V + + K IE+ + L V ADE + Q++ NL+ NAVKFT G V Sbjct: 953 LVDVVLSLTLPIIGAKPIELVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDE-GSVT 1011 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 ++ G IS+ D G G+ E + SF Q A G GLGL + + ++ Sbjct: 1012 ISAE-VQGEEICISVADTGIGVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVE 1070 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 HGG +RS L +G LP + + T +A Sbjct: 1071 LHGGTIGVRSTLGKGATFYFYLPLNAAIEDEADGQEPETNSAYHA 1115 >gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 938 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 139/250 (55%), Gaps = 9/250 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E ++ KS ++++SHELRTPL+++LGF+E++ + + P E K+YI IH+ + L N Sbjct: 575 EVDMMKSELVSTVSHELRTPLSSVLGFTELLLAKEIKP---ERQKKYIETIHKEAKRLTN 631 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ RIE+G+ S + ISL ++ + + Q+ + I + + + V A Sbjct: 632 LINDFLDIQRIESGQQVYSMNKISLTALIEDVLKNFQI---DPQHNIRFVDESTNAIVSA 688 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE+ + Q++ NL+ NA+KF+ GG + + + + +SI+D G GI E IP++ Sbjct: 689 DEERIIQLLFNLIGNAIKFSPNGGEIIIRMQNINE-TVQVSIQDCGIGIPESAIPSLFQK 747 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + + + G GLGL +++ I++ H G + S+ G + LP I E Sbjct: 748 FKRVDNSSRRKIGGTGLGLALSKEIISKHKGDIWLESEEGIGTTIFFTLPLY--DQEIVE 805 Query: 484 DNHESTQYKC 493 + +E T+ K Sbjct: 806 NRNELTEEKT 815 >gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] Length = 812 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 8/259 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + +L + AE N AK+ FL+ MSHE+RTP+NAI G + + Sbjct: 264 TELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMTTIAAANI 323 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + + I S +HL+ LIN++LD+S+I+AG+ +++ L ++ + Sbjct: 324 ---NDRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQNVTESITAI 380 Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + +A K ++ +D + + + D + QV++NLLSNA+KFT GG V + + Sbjct: 381 IYPQADAKGLKFSVPLVDITDTVLTGDALRLNQVLINLLSNALKFTPEGGAVRLEIRQLQ 440 Query: 398 GR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++ D G G+++ + + T F Q S A + G GLG+PI ++++ G Sbjct: 441 KKAGRVRLRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGLGMPITKNLVTLMG 500 Query: 454 GQFLIRSKLREGVEVIAIL 472 G +RS+ +G I L Sbjct: 501 GTVSVRSEPGKGSTFIVEL 519 >gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] Length = 794 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + LI + + + + + +AEE + KS FLA+MSHE+RTPLNAI+GFS Sbjct: 389 LRTSKLKNKLLILIDKQKEDEIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 448 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ N E EYI I + + LL LIN+ILD+++IEAG E +S I + + Sbjct: 449 NLL----TIAENEEERDEYINIISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINAL 504 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +L+A E +++ + +D+ + QV+ N ++NA+KFT G + Sbjct: 505 LSDIEQSSRLKAPE-GVQVSFVEKLPYCIIMSDKNRLAQVMTNFINNAIKFTKEGS---I 560 Query: 392 TVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 G+ +KD G GI + V F + S QG GLGL I Q I+ Sbjct: 561 RFGYEHKDDKLLFYVKDTGCGIEPEKKDLVFNRFVKL----NSFAQGTGLGLAICQMIIK 616 Query: 451 NHGGQFLIRSKLREGVEVIAILP 473 GG+ + S+L G LP Sbjct: 617 KLGGEIGVESELGTGSTFWFTLP 639 >gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 489 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 ++ F+A++SHELRTPL +I GF E + + + E + ++G I+ Q L Sbjct: 246 RLEQMRTEFVANVSHELRTPLTSIRGFVETLLEGAL--EDPEVSRRFLGIINHEAQRLQQ 303 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI ++L LSR+E+ L + + + A+EK + + ++I + + Sbjct: 304 LIEDLLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREKGVALEKEIPAEIPELAI 363 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 E + QV+LNL+ N +K+T GGRV + G + + D G GI +P V Sbjct: 364 SESYLNQVLLNLIDNGIKYTPAGGRVTIRAARL-GELVQVEVADTGIGIPPESLPRVFER 422 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + I+ +HGG + S+ +G LP Sbjct: 423 FYRVDKARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGSHFFFTLPIA 474 >gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1279 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 20/288 (6%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + +A F I L+ + L + E+ A++ ++ AE+ AKS Sbjct: 750 LWQSAAIFLVIIAATLWW--NRRLKAEVERR------RQAEAALLVAKEAAEQATKAKSV 801 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA MSH++RTPLN+++GF++++ + + K Y+ I G+ LL +IN+ILDL Sbjct: 802 FLAHMSHDIRTPLNSVIGFTDIL----DTLIKDPVQKGYLRSIKIGGKALLGIINDILDL 857 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAG+ L ++ + R+ + + + KN+ +D +L + D +RQ Sbjct: 858 SKIEAGQMVLHRENVNPHQLFRDMEQLFHEQIRHKNLNFVVDVDEALPQSLLVDAVRLRQ 917 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSF 424 ++LNL+ NA+KFT G V + V Q I ++D+G GI+ + ++ F Sbjct: 918 ILLNLIGNAIKFTEQ-GYVTLRVQKIFRDAQCSKLDLQIDVEDSGMGISPDDHESIFQMF 976 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + G GLGL I Q ++ G+ + S+L +G IL Sbjct: 977 QQSKGQDERRFGGSGLGLAICQKLVTMMDGEIHVASELGQGSTFSVIL 1024 >gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 850 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 152/306 (49%), Gaps = 13/306 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + IS +G S + + + + L A + + E A + Sbjct: 406 GFFSAQSTPLISRSGQFIGLFSTYWRRHHRPSERERRFLDLLARQAADLIEQRQAIAERQ 465 Query: 237 E-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + R+ AE+ N K FLA +SHELR+PLN ILG+S +++ + P+ K+ Sbjct: 466 QLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITT---KK 522 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I R+ + LI+++LD++RI G+ +L E+ ++L+ +V + +++ A+ K+I Sbjct: 523 GLSTIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAEAKSIA 582 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + ++ ++ V DE + QV+ NLLSNA+KFT GG+V V + +G +++KD G Sbjct: 583 LQFEVI-TVCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVRLE-VNGEQACLTVKDTG 640 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468 GI+ +P + SF Q +++ G+GLGL I + I+ H G S +G Sbjct: 641 KGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEGQGATF 700 Query: 469 IAILPN 474 P Sbjct: 701 TVQFPV 706 >gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 444 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 12/292 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS----------LSDETRKRAEEENLAK 249 + H + + + L E + E + K Sbjct: 115 LAQVLRHAIRIHRAEMQTALANQQLRETNEQLLRKNQELEQQRQQIQLQNFKLLEASRLK 174 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHELRTP+NAI+GFS+++ G L + + + I +G++LL L+NE+L Sbjct: 175 SQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTH-QQTDMVERILNNGKNLLMLLNEVL 233 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D S++E GR EL L I+ + ++ A+ K + + ID V+ D +R Sbjct: 234 DFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPLVFNDSVRVR 293 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+++NLLSNA+KFT G + + V I+++D G GIA + + +F Q Sbjct: 294 QILINLLSNAIKFT-ESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHIFEAFRQVDQ 352 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +I G GLGL I S++ GG+ ++ S+L G +P L Sbjct: 353 SITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIPRQLSLPST 404 >gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999] Length = 1029 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 11/258 (4%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 ET +RA E N +KS FLA+MSHE+RTP+N I+G +E+++ ++ EY I R Sbjct: 518 ETEQRANEANQSKSDFLANMSHEIRTPINGIIGMNELLQKTSLTT----QQTEYTQAIQR 573 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S Q LL LIN+ILD S+IEAG+ L+ +++ + + +Q + KN+++ ++ P Sbjct: 574 SSQALLGLINDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQPLSDAKNLQLDIQVCP 633 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L ++ +D +RQ+++NL SNA+KFT G + ++ + +I D G GI + Sbjct: 634 -LVTIMSDPMRLRQILINLCSNAIKFT-EYGSIRISFSVIDEQYLRFTISDTGIGIPSEK 691 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + K + G GLGL I+Q + GG + +EG E Sbjct: 692 SSQLFEKFNQLDTSSKRSIGGTGLGLTISQQLSQLLGGAIGFNPEYQEGAEFWFT----- 746 Query: 477 VLNFIPEDNHESTQYKCY 494 V + E +S+ +K + Sbjct: 747 VDTQLNEFYSQSSVFKTH 764 >gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] Length = 813 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 547 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 606 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 607 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 666 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 667 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 726 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 727 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 786 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 787 AQFAIDSNPGQGTVVEIVFPPTRVL 811 >gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 823 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 8/286 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + H + +++ E + +LE + + + A+ N AKS FLA MSHE+R Sbjct: 137 RLALHSEELKLEVAERTGELSAVNRQLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIR 196 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+ +LG +E++ +G + Y+ + RSG+ LL++IN ILD S+IEAGR EL Sbjct: 197 TPMYGVLGMTELL----LGTDLTKEQSRYVETVRRSGEALLSIINNILDFSKIEAGRMEL 252 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380 L + + + A K +E+ +++ L ++ D +RQV++NLL NAV Sbjct: 253 ETIPFDLRQLASDAAAIFAEDAARKGLELSLELERGLPRMFLGDPGRLRQVMVNLLGNAV 312 Query: 381 KFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 KFT GG V +T+ IS++D G GIA + F QG ++ G G Sbjct: 313 KFTLKGG-VRLTLKLAEEPALVRISVEDTGIGIAPEARLRIFNQFAQGDESMTRKYGGTG 371 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL IA+ + GG + S+ G + ++ P Sbjct: 372 LGLAIARQLTELMGGVLDVESEPGRGSCFSFTV-RLQLHEEAPRSE 416 >gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1135 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 16/326 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P A S L + AL+ + V +L A Sbjct: 574 MLPWREAALESGYQSSIALPLGNEQRTFGALTLYAVQPDAFSAQEVGLLEELARNVAFGI 633 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E A++ R AE N AKS FLA+MSHE+RTP+NAI+G + ++ + P Sbjct: 634 ESFRARTQ----RDAAEGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRSGVTPEQAAR 689 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + + QHLL++IN+ILDLS+IEAGR +L + L DI+ ++ A++K Sbjct: 690 ----LEKVDSACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSIIAEPARDK 745 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---- 402 + I D + D +RQ +LN SNAVKFT G + + G Sbjct: 746 GLAIDVSGDAQALWLRGDPTRLRQALLNYASNAVKFTDK-GSISLRAELLQDGGDELLLG 804 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+KD G GI +I + +F Q ++ G GLGL I Q ++ GG+ + S Sbjct: 805 FSVKDTGIGIEPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGGEVGVDSTP 864 Query: 463 REGVEVIAILPNTR---VLNFIPEDN 485 +G + R V+ P D Sbjct: 865 GQGSHFWFTVRLQRGHSVMPAAPADE 890 >gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 867 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 92/485 (18%), Positives = 180/485 (37%), Gaps = 31/485 (6%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHV-ESLFRVSPILPLFVLLVANIGTWFTQNP------ 70 DH P+ + ++ I ++ L++ + W + Sbjct: 266 EYRDHRSGSVPAMTGYALTTGRPEWGLAILPYLAIGAVYALIIPTVFHWMPGHTLSRDGK 325 Query: 71 ---IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIG--LCWTLLT 125 I + + I + + ++ + V I + T Sbjct: 326 ELGILILVAAILVVLAMLRQAVAAGELARLKTEHAVQASEIRFAALARHSSDLIILTGTD 385 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L + + L+ +S+ F V+A +++ + Sbjct: 386 LRARFASDSIQRVLGHTPRDLMRVSLLDYL-QPEDRVRASRFIARVLAAPDITLVTEWPM 444 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + S+ + + E + + ++ R AE Sbjct: 445 RHADGTWRDIEILATNL-------SHNPAVGGLVLNGRDVTERKRHQHELEQARAAAESA 497 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AK FLA+MSHE+RTP++A++G + ++Y+ IH +G LL ++ Sbjct: 498 NRAKGEFLANMSHEIRTPMHAVIGL----SSLLLDSTLLPQQRDYLERIHLAGTALLGVL 553 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 N+ILD S+IEAGR L + L +++ + +++A++K + + ++ P + + D Sbjct: 554 NDILDYSKIEAGRMRLESIPLRLQEVLDTTHALFEIQAEKKPLSLEFELAPEVPERLQGD 613 Query: 365 EKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVL 421 + QV+ NL+ NA+KFT GG V VT + I S++D G G+ ++ + Sbjct: 614 PLRLLQVLNNLVGNALKFTHTGGVWVGVTCQEQTETSVLIKISVRDTGIGLTPAQLERLF 673 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q + G GLGL I + + GG+ + S +G R+ Sbjct: 674 GVFHQADASTTRQYGGTGLGLSICKRLTELMGGEIGVESVAGQGSTFWFT---ARLKPLA 730 Query: 482 PEDNH 486 P+ + Sbjct: 731 PDTDQ 735 >gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 930 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 97/471 (20%), Positives = 179/471 (38%), Gaps = 14/471 (2%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDRE-IITLHVESLFRVSPILPLFVLLV 59 +Y R+ + + I+ L ++ R+ + + L + + + V Sbjct: 27 IYMERQQVRQALVTRIADVTATLAPAVSLALEEGRDDHLRRLAQRLLDIDEVAAVSVRDA 86 Query: 60 ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + + + E+ + +G Sbjct: 87 DGDAVLSLGETQPAPALPMPDRSALQEAETRWRWLQPLGSPAEIRGNAGTAYWLDVDLGT 146 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 LT + LIA +S L + L S + Sbjct: 147 TALTLTFYRQLASHGMAGLVLGLVLFLIAYPLSRRLTAPLQRHITLLERLHGGDFSARLT 206 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 ++L L + + +I + + + +EV D Sbjct: 207 PRGSRELVTLGHQLNALGEQMMRLRE---DTQAQIDQTTFDLRESMETIEVKNIELDMAH 263 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RA E N KS+FLA++SHE+RTPLN I+GF +++ + +E++ + + Sbjct: 264 RRALEANRIKSQFLANISHEIRTPLNGIIGFCQLLGRSALDS----RQREWLEQVQTASD 319 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSL 358 +LL+LI+++LD S+IEAG+ EL + ++ +V E + + AQ K++ + D Sbjct: 320 NLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTAQRKSLHLLGLVYDDVP 379 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAE 414 + D ++Q++ NL++NAVKFT G V V V IS++D G G+ Sbjct: 380 DQLLGDPLRIKQILTNLVNNAVKFTER-GEVVVRVMLDDLNATSSKLRISVRDTGIGLDL 438 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 + +F QG + G GLGL I++ ++ GG + S+ EG Sbjct: 439 PSRERLFQAFSQGDASRSRKYGGTGLGLMISKRLVEQMGGDIDVESESGEG 489 >gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 148/327 (45%), Gaps = 33/327 (10%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYIT-----YHLFKSNVKILSCQAEKDDLIAELEV 230 + + L + + +T + +L ++ + + Sbjct: 343 LVLLEQFQIRAYLLVPVFIGDRFWGLLVTCQQNPHQWDDIEQSLLRRVRDQLGVALQHAE 402 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++++AE N AKS FLA+MSHELRTPLNAILGFS+++ K+ Sbjct: 403 LMHQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNR---DKNLTPKQKQT 459 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I+RSG HLLNLIN++L++S+IEAGR L+ L+ ++ M L+ + K +++ Sbjct: 460 LTSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKL 519 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------------- 393 L + DE +RQV++N+L+NA+KFT G V + V Sbjct: 520 LVDKALDLPPYIRTDESRLRQVLINVLTNALKFTEQ-GSVALKVYTQPLRSPNLVPTHDD 578 Query: 394 ------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 I ++D G GI+ E+ + +F Q S S +G GLGL I Q Sbjct: 579 GNAVTEEHQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNS-TEGAGLGLAICQH 637 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 + GG LI SK +G V +P Sbjct: 638 CIELMGGNILIDSKEGQGTTVQIKVPV 664 >gi|39952003|ref|XP_363718.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15] gi|145020511|gb|EDK04640.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15] Length = 1307 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 754 DTDLTQY----QREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNA 809 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A +K +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 810 LKTLAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868 Query: 395 WTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 869 KGNDVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKR 928 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G Sbjct: 929 LVNLMGGDVWVKSQYGKGSSFYFT 952 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 12/241 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R AE+ N AKS FLA+MSHE+RTP+N ++G +E+ + + +EY+ + +S Sbjct: 815 ARIEAEQANRAKSEFLANMSHEIRTPMNGVIGLTEL----ALMTVEEPKAREYLQMVKKS 870 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL++IN+ILDLS+IEAG+ L + SL + + + L + AQ K +++ ++ P Sbjct: 871 GLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQVAPD 930 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGP 410 + ++ D +RQV+ NL+ NAVKF+ G V V+VG G + D G Sbjct: 931 VPDALMGDRGRLRQVLTNLVGNAVKFSHK-GWVRVSVGLDDGNVSSEQATISFEVADEGI 989 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI ++ T+ SF Q + G GLGL I++ ++ GG RS++ G Sbjct: 990 GIPADKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHLVELMGGTIQARSEMGIGSTFSF 1049 Query: 471 I 471 Sbjct: 1050 T 1050 >gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 640 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +S FLA++SHEL TPL ++G S + L +G L+ + ++Y+ IH SG+HLL +I Sbjct: 409 NRLRSEFLATISHELLTPLTYVIGMSSTLLLWPLGELS-KRQRDYLQTIHDSGEHLLEMI 467 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK--IDPSLSSVWA 363 N+ILDLS++EAGR L+ + SL+ + + L +A+ + + + I+PS S Sbjct: 468 NDILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKLDLQINPSHDSFTG 527 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q++ NLL+NA+KFT GG V + + W ++D G GI E ++P + Sbjct: 528 DSTRVEQILWNLLTNAIKFTPEGGNVTLRL-WVEDATAIFQVEDTGIGIPEEQLPLLFEK 586 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q + +G G+GL + + ++ H G+ + S + G +P Sbjct: 587 FQQLDTPYRRRYEGTGVGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 636 >gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] Length = 774 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I E ++A+ ++RAEE N KS FLA++SHE+RTPLNAI+GFS ++ + + Sbjct: 530 FITERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMT----ED 585 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E KEY+ I ++ LL LIN++LDLS+IEAG +L S L ++ +++ R Sbjct: 586 EEEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRL 645 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402 Q++ IF+ P V++++ ++Q++LN L+NA KFT+ G + G+ + Y Sbjct: 646 QDRVDLIFEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGS---IRYGYEVRDKDIY 702 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI E ++ + F + S +QG GLGLPI Q I+ N GG+ + SKL Sbjct: 703 YYVTDTGTGIPEDKLHLIFERFIKLD----SFKQGTGLGLPICQLIIQNMGGEIGVNSKL 758 Query: 463 REGVEVIAILPNTR 476 EG LP Sbjct: 759 GEGSTFWFTLPLKP 772 >gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 1163 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 3/284 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T L + + + D EL A+ +E + + + KS Sbjct: 436 AHLETQQVELEQTNEQLAEQAQTLAEQRDAMDQKNTELNQAQVQLEERAEELQRSSKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L+ E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ + M + A K + ++ P +++ D + + Sbjct: 555 ISKVEAGKLEVMPENTSVARLADGLRGMFEPLAAVKQLAFSVQLQPDAPSTLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 QVI NLLSNAVKFT G V +T+ ++D+G GIA + ++ +F Q Sbjct: 615 QVIKNLLSNAVKFT-EHGTVSLTIAGQPDDRIAFIVRDSGIGIAADQQESIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ + GG + S +G +LP Sbjct: 674 TTNRKYGGTGLGLSISRDLATLLGGSISVSSAPGQGSVFTLVLP 717 >gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 36/277 (12%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ E K F++ +SHELRTPL +I G +++ + P +E + + + Sbjct: 439 RREVE---RLKDEFVSVVSHELRTPLTSISGALDLLASGVV-PAGSEDAQRMLNIAANNT 494 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L+ LIN+ILD+ RIE+G+ +++ A + D++ + + +++ A++ I++ + P Sbjct: 495 DRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLS--MSPLS 552 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------------------ 400 + +WAD + QV NL+SNA+KF+ G V VT Sbjct: 553 AHLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEKSQTPIPLYPQTPIPL 612 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ++KD G GI ++ ++ FGQ + + G GLGL I +SI+ +HGG Sbjct: 613 YPHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGG 672 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 Q S EG LP PE+ ++ ++ Sbjct: 673 QIWAESTSGEGSTFSFTLPI------FPEEQNKEEEF 703 >gi|254420553|ref|ZP_05034277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196186730|gb|EDX81706.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 605 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 178/439 (40%), Gaps = 22/439 (5%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 ++ + + L + A +W ++TLA + + K+ + Sbjct: 26 AILQTQYLRYLIIASWALGLLGTVAWWQAMIWFVVTLAAGSIRGVVEHKLSHRVDV---- 81 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 W + W L+ + + T+ + + + + A AV Sbjct: 82 -GWGMVFPAVATVTTAAWAAAPLMAWFSNSAFGQTLAVALIISGYVLVFAQLRNSPRQAV 140 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 +S V A + S+ +L ++ + +I + QA + Sbjct: 141 IISSPYGVAACIILFSLWGTPQFWSMLAVLPFTMACLFVLVTMTMLRERRIDAFQAHQAH 200 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI E + R +A+ N AKS FL +SHELRTP+N +LG ++++ + Sbjct: 201 LIEE-------LEAARDKADAANDAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---- 249 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY+ I SG +LL+L+N+ILD+++IEAG+ + + D+ R + +A Sbjct: 250 EGAQREYLSIIRNSGDNLLSLLNDILDMTKIEAGKMTFEVVDVVVDDLQRRISGPFEAQA 309 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRG 400 + K + +++ + V D + QV+ NLLSNAVKFT + G + V S R Sbjct: 310 EAKGLTFVSELEGDIPAVVRGDPLRVCQVVQNLLSNAVKFTDV-GEIRYVVRGRRISDRR 368 Query: 401 Q--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D+G GI+ ++ + F Q + G GLGL IA+ + GG + Sbjct: 369 VGFEFCVTDSGAGISPTDLERLFQPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDISV 428 Query: 459 RSKLREGVEVIAILPNTRV 477 S + G + V Sbjct: 429 DSSVGRGSSFTLTVEAEVV 447 >gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 949 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 83/405 (20%), Positives = 171/405 (42%), Gaps = 13/405 (3%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGLCWTLLTLVEPGTW 132 SL + + L+L ++ + + G + G+ + Sbjct: 139 SLGISTAHQSRLALRRRQNPLGGEDVLEVAAPVLSEGAHAGTVIYGISTRSVVERMVQAR 198 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + + L++AL + + + + A ++ S A Sbjct: 199 DLAANRLVTTLGLIVALILGSGAASYFLVKRVAVHITEPLLALRTAAGAIATGLRSSAPP 258 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + ++ S ++ + + ++ E A ++A E + KS F Sbjct: 259 TESPIADRKKWERVQITSGDELELLGSAFNSMVEANEQAFEELRVKTEQALEASRMKSEF 318 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+N ILG +++ +++ + + Y+ + S L+++IN++LD S Sbjct: 319 LANMSHEIRTPMNGILGVIRLMQNQSL----DGKMRRYVETVDASANTLMSIINDVLDFS 374 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 ++EAG+Y + L +++E ++ +A EK +E+ +++ + + V D RQV Sbjct: 375 KLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRVPTGVVGDPDRFRQV 434 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQG 427 + NL+ NA+KFT G V + + +++ D GPGIA + + +F Q Sbjct: 435 LTNLVGNAIKFTDR-GEVLIDASTSQQDKATALIKLAVVDTGPGIAPDDQKKLFAAFSQV 493 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ G GLGL I++ ++ GG+ + S +G + Sbjct: 494 DGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGSRFWFTI 538 >gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01] gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01] Length = 985 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + ++L+ A +E RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++ Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + P+ K Y I+RSG+ LL ++N++LD S+IEAG E+ L +V + Sbjct: 496 IDSGLNPM----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 ++ +AQEK + I+ + W D + QV+ NL+ NA+KFT G ++V+ Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVS 611 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + + D G GIA+ + T+ +F Q + G GLGL I++ I+ Sbjct: 612 LNPEDESQVLFEVSDTGIGIAKKDQKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GG + S+ G +P P + +C Sbjct: 671 GGCLDVDSEEGHGSRFWFSIPLE---ESEPVETVTIANARC 708 >gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 660 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 9/297 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + +L L Y Y + A+ + +LE+++ ++RAEE Sbjct: 370 FILFTFLVLIGGLFISLYYYYRTKILKNHLEKTTAQLREDKKKLELSEIALRHAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS ++ + KEY I + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV---ETTDEQKEYADIIQTNSELLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ L++ + I + + + + ++I++ ++ ++ D Sbjct: 487 ISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR-KNRTRDIDVRLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTS 423 ++QVI+NLL+NA+KFT GG + + S+ D G GI E + V Sbjct: 546 PLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGAGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + QG GLGL I + + GG I + G + P + + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHPIKKRESE 658 >gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii TCDC-AB0715] gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] Length = 1154 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 173/313 (55%), Gaps = 9/313 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231 A + + ++ V ++ +L + +++ + + + ++ A D IA EV Sbjct: 607 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 666 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R AE N AKSR++ +SHELRTPLN+ILG+S++++ + +E K + Sbjct: 667 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 723 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I RSGQHL +LI+ +LDL+RIE G+ L+ + + + + I M Q + ++KN++ Sbjct: 724 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 783 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 +I +L V D+K + QV++NLL NA+KFT G + + V + + Y I+D G Sbjct: 784 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 841 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV-- 468 GIAE ++ + F +GS ++ G+GLGLPI + ++ GGQ + S+L +G + Sbjct: 842 GIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKI 901 Query: 469 IAILPNTRVLNFI 481 LP+ V++ I Sbjct: 902 KFYLPSKEVVHPI 914 >gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] Length = 766 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 7/245 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + R AE N +KSRFLASMSHE+RTP+NA+LG +++ T+ P K Sbjct: 221 EQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTTLKP----NQK 276 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + S + LL++IN+ILD SR+EA + L ++ + + +AQ K + Sbjct: 277 ELVNTATDSSELLLSIINDILDFSRMEANTFYLENHIFNIHKSLNSVLKTFHPQAQNKQL 336 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ-YISI 405 E+ I ++ + V D +RQ++LNL+ N++KFT G ++ V GR Q + S+ Sbjct: 337 ELSLFIADNVPTYVQGDAHRLRQILLNLVGNSLKFTDDGQVQILVNAEEHEGRIQLHCSV 396 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D+G GI + ++ + F + +G GLGL I Q ++ G + S+ G Sbjct: 397 QDSGIGIQQEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGLG 456 Query: 466 VEVIA 470 E Sbjct: 457 SEFSF 461 >gi|88861247|ref|ZP_01135879.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88816728|gb|EAR26551.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 946 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 8/283 (2%) Query: 215 LSCQAEKDD--LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 AE L ++E ++ K+ + + KS+FLA+MSHE+RTPL A++G +E Sbjct: 443 RRAMAENARYVLSKKVEQRSVELEQISKQLQRASEVKSQFLANMSHEIRTPLTAVMGQAE 502 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +I G + K+ + IH + HLL LIN+ILDL+RIEA + L + ++ + Sbjct: 503 LIIN---GDIPVSEIKDEVKIIHNNSLHLLELINDILDLTRIEANKLILDRAPADVVALG 559 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +E + M A++K +++ + A D+ ++Q+++NL SNAVKFT G V V Sbjct: 560 KEVVHMFCESAKQKGLKLSFQHFLCTPYYIAMDKVRLKQILINLCSNAVKFTEQ-GEVKV 618 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V TS ++I I D G G+ ++ + SF QG I G GLGL +++ + Sbjct: 619 EVWPTSSGLKFI-ISDTGIGMTNKQLGNIFNSFTQGDNTISRRFGGSGLGLCLSEQLANL 677 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 GG + S+L +G L ++++ P E + C+ Sbjct: 678 MGGSISVTSELGKGSIFTLHLTCQQLVDHQPIAEAEKSLASCH 720 >gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 745 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 132/286 (46%), Gaps = 5/286 (1%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + L +S+ + Q + + + E R +A N AKSRFLA Sbjct: 180 AIGPRWIAWREALVRSDAGHPAVQQCVGRDVTDRTETERALAEARDQANAANRAKSRFLA 239 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SHE+RTPLN ILG S ++ + P Y + SG+ L++LINE+LD S+I Sbjct: 240 MASHEIRTPLNGILGMSGLLLETQLTP----EQTTYAKAVRSSGEALMSLINELLDYSKI 295 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG+ L +L ++ E +L RAQ K +EI +D L V D +RQV+L Sbjct: 296 EAGKLALEAQPFALTALIEEITELLAPRAQGKQLEIAAYLDERLPTWVTGDAARLRQVLL 355 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL NA+KFT+ GG + ++D G GIA + F Q ++ Sbjct: 356 NLAGNAIKFTSKGGVALIAEPGIWPNEISFQVRDTGIGIAADAQERIFREFEQADDSVAR 415 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + G GLGL I+ I+ GG+ ++S+ G +P L Sbjct: 416 SFGGTGLGLAISDRIVKRMGGRIALQSQPGAGSTFEVSVPLPPALE 461 >gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE] gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294] gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900] gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606] gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056] gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058] gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059] gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013150] gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013113] gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii] gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE] gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294] gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606] gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2] gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii TCDC-AB0715] gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013150] gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013113] gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] Length = 935 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ ++ GQ +G F ++ HE Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528 >gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] Length = 959 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 24/357 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + ++I + + + + I +++ G Sbjct: 344 VLGMVIVVMIVWRVVYVQVLKRLAEYSAALASIAQGQLKVDITVKGNDELAHMGQAIITA 403 Query: 198 SFFTYITYHLFKSNVKILSCQAEKD--------DLIAELEVAKSLSDE-------TRKRA 242 + +S VK E + +L+ A +E R+ A Sbjct: 404 RNTAQALKVVAESEVKAKKELEEHKEHLEELVTERTHQLQQANERLNEEVENHAHARQLA 463 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + AKS FLA+MSHE+RTP+N +LG + +++ E + N+ Y+ I+RSG LL Sbjct: 464 EQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDEGL----NKQQAYYVDVINRSGSTLL 519 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++N++LD S+IEAG E+ L +V + +L RA EK++++ ++ L W Sbjct: 520 AILNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELGRYW 579 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPT 419 D + QV+ NL+ NA+KFT G V + V + D+G GI+ E Sbjct: 580 RGDMTRISQVLNNLVGNAIKFT-DHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQQN 638 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + +F Q S + S G GLGL I++ I+ GG+ + S +G +P + Sbjct: 639 LFDAFTQASGGLSSK-GGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIPLAQ 694 >gi|326315055|ref|YP_004232727.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371891|gb|ADX44160.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1156 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 110/445 (24%), Positives = 200/445 (44%), Gaps = 32/445 (7%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLIT--LAVYAANLSLGK-KVMNSDIKIGEVYVWR 107 I + +A + W+T + T ++ + + + D+ Y Sbjct: 475 IALALSMALAPLFAWWTGGRYYLARQPATGWAPGELVRCAVCENRFESEDMARCPAYGAA 534 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY--AVFL 165 I L + T + + A LL+ + +A NF L VF Sbjct: 535 ICSLCCSLESRCHD------RCKTGSRAADQLRSLAALLLPRAWAAKMNFRLGQYLMVFA 588 Query: 166 SFFPVVVALS------------TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 S VV L Q + + +L +LA +++ ++ + Sbjct: 589 SLCAVVAFLVGVVYVQEGLETPAQFLRVPFLKVYALLALLAAVCAWWVVLSTGSRRMAQD 648 Query: 214 ILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 Q + I + + R RAE N+AK+R++A M+HELR+PLN+ILG+++ Sbjct: 649 ESERQTQLLLQEIEAHKRTDAELQAARDRAEAANMAKTRYVAGMTHELRSPLNSILGYTQ 708 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ P + ++ + I RSG+H+ LI++ L+L+RIEAGR + + + L ++V Sbjct: 709 ILQK---APPDAHALRDALSTIERSGRHMHALIDDSLELARIEAGRLRQAVAPLPLAELV 765 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 R+ ML+ +A+ + + ++ ++ + AD + +RQ+++NLLSNAV+FT G V + Sbjct: 766 RDVEGMLRPQAEARGLAFAVEVLGTMPEWIRADARRLRQILINLLSNAVRFTRQ-GEVRL 824 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + + I + D G GI ++ + F +GS +++E G GLGL I + Sbjct: 825 RLDFRA-HVARIEVIDTGIGIEPQDLERIFLPFERGSAGRRASEPGTGLGLTITHLLTEL 883 Query: 452 HGGQFLIRSKLREGVEVI--AILPN 474 GGQ +RS + EG LP Sbjct: 884 MGGQLSVRSTVGEGSTFTARLYLPA 908 >gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 962 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 15/280 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + Q D ELE A+ L +E E + KS FL++MSHELRTPLN+ Sbjct: 239 LAEQTHALEQQQKILQDNNRELEQARELVEEKANELELSSKYKSEFLSNMSHELRTPLNS 298 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +L S ++ L + EY +H +G LL LINE+LDLS+IEAGR L+ + Sbjct: 299 LLILSRLLYENKDENLTD-KQIEYSRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEM 357 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 +L A+EK + + + + S ++ D + + Q++ NLLSNA+KFT Sbjct: 358 NLKGFTSYVEQHFLHIAEEKGLYLHIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTS 417 Query: 386 GGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 GG + + + IS+ D G GI E + + +F Q Sbjct: 418 GG-ITIQIDRPTAGIDLSRSTLNPQHAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSR 476 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + + GG+ +RS+ +G LP Sbjct: 477 KYGGTGLGLSITRELAKLLGGEIQLRSEEGKGSTFTLYLP 516 >gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF] gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii] Length = 935 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 20/296 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 243 RLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELR 302 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 303 TPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 359 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + V + + ML A +K+I + ++ V D +Q++ NL+SNA+ Sbjct: 360 ETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAI 419 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 420 KFTPD-GEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 478 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ ++ GQ +G F ++ HE Sbjct: 479 GTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFT------AQFAVDEEHE 528 >gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1132 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + +AE+ A+S FLA+MSHE+RTP+NAI+GFS+++ +++ Sbjct: 535 ITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLDDSL----P 590 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ I++S + LL+L+N++LD ++++ G+++L S+I+ + + L L+A Sbjct: 591 AEQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVSTLWLQAS 650 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K + + + + S +RQV+ NL+ NA+KFTA GG V + V Sbjct: 651 SKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGG-VSIDVSVKPSGCIEF 709 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +I D G G+ ++ V +F Q ++ G GLG I++ ++ GG+ +S Sbjct: 710 AINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITAKSTFG 769 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 770 QGSCFGFTLPL 780 >gi|94264450|ref|ZP_01288239.1| PAS [delta proteobacterium MLMS-1] gi|93455140|gb|EAT05362.1| PAS [delta proteobacterium MLMS-1] Length = 1089 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 20/282 (7%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + I+ + + E + AE NLAKS FLA+MSHE+RTP+NAI+ Sbjct: 457 RDSSGRIREIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSHEIRTPMNAII 516 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G SE+ + ++ + IH S Q LL +IN+ILD S+IEAG +L+ Sbjct: 517 GLSELTLQGELAA----EQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHLQLAPHPFRP 572 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +V + + A K +E+ +DP + V DE + Q+ NLL+NA+KFT G Sbjct: 573 ARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLANALKFTRK-G 631 Query: 388 RVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 RV + + + G ++ D G GI + + + F Q Sbjct: 632 RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQADDTTTRKY 691 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475 G GLGL I+ ++ GG+ + S+ G LP Sbjct: 692 GGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLPQA 733 >gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] Length = 914 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 7/242 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS ++++SHELRTPL+++LGF+E++ + + P E +YI IHR L N Sbjct: 574 EVDQMKSELVSTVSHELRTPLSSVLGFTELLLTKNIKP---ERQNKYIDTIHREAVRLTN 630 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LDL R+E+G+ + + + L +I E + + E+ + V A Sbjct: 631 LINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRFR---HEQKHNVHLIDKAREVYVNA 687 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+ + Q+ +NL+ NA+KF+ GG V + + +SIKD G GI++ +I + Sbjct: 688 DQDRLVQLFINLIGNAIKFSPQGGDVEI-LLENKNNSIQVSIKDEGIGISKQDIAQLFQK 746 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + +++ G GLGL I + I+ H G+ I S+ +G V LP E Sbjct: 747 FKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLPLANNTITFDE 806 Query: 484 DN 485 ++ Sbjct: 807 ED 808 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 11/267 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + ++ K+AE N+AKS FLA+MSHE+RTPLN I+G ++++ +G Sbjct: 274 NIRDMTQNKINLKSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLLDGTPVG 333 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 N +YI S L L+++ILDLSRIEAG E+ ES D+ + + Sbjct: 334 ADQN----KYIELALTSCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNSILGLFA 389 Query: 341 LRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----G 394 + + K + + IDP++ V DE + Q++ NL+ N +KFT G V V + Sbjct: 390 VESLTKAVTLKCIIDPTIHPEVIGDEGRVLQILFNLVGNGLKFTKE-GSVTVEITPLGSE 448 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + ++ D G GI E + + F Q + QG GLGL I + ++ GG Sbjct: 449 KNNDYRVLFTVSDTGIGIHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKLVHLMGG 508 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481 + S + EG + +LP + + Sbjct: 509 SIEVDSVVGEGTSMNVVLPFKQSIEAS 535 >gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 810 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 149/268 (55%), Gaps = 6/268 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + Q++ L ++ + + ++ AE N AKS FL+ +SHE+RTP+NA+LG S+++E Sbjct: 401 ALQSQIATLDKQVRDRTAALSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLE 460 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++Y+ SG+ LL+LI +LD++R+E GR +L+ SL +V+E Sbjct: 461 KTEL----DARQRKYLRMGKSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEA 516 Query: 336 IIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 I +++L AQEK + + +KI ++ + D +RQ+++NLL+NA+KFT GRV V V Sbjct: 517 IDVVELAAQEKGLILNKKIALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQ-GRVLVEVT 575 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G + D G GI + + T+ F Q + G GLGL I++ ++ GG Sbjct: 576 PAEQTGVLFRVSDTGEGIPQESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGG 635 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIP 482 + + S+L G + ++P R + P Sbjct: 636 RIWVESRLGRGSDFFFLVPLERTDSAAP 663 >gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1170 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M + A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRSMFKPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 733 >gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 597 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + F++S+SHELRTPL +I G++E + M + E + ++ IH+ + Sbjct: 356 RLRNLERIRRDFVSSVSHELRTPLTSIRGYTETLLDGAM--HDAEHTEAFLRIIHQESEQ 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+N++LDLS+IE+GR E S + +SL+++V + L + +K++ + I L Sbjct: 414 LTALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPL 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D + V+ NLL NAVK+ GR+ ++ + ++DNG GIA+ ++ Sbjct: 474 VRGDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKR-DGFVTLEVEDNGIGIAQKDLDR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + I+ H G +RS+L G LP Sbjct: 533 IFERFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLPVA 588 >gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 17/337 (5%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + A L ++ S+ +SN + +FL+ V +L I +A L L Sbjct: 140 LNYVAILRLSSSLEEVSNIIKRLVLFLALVLTVSSLVALII------GFFIANELTKPLE 193 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 T + K N K+ + + D++ + +++E + EE K+ F++++SH Sbjct: 194 MVKKATQEMAKGNFKVRAEKTSNDEIGILADSFNKMAEE-LGQLEE---MKNEFISNISH 249 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 EL+TPL +I GF+ N EY+ I L L++E+LD S+IE + Sbjct: 250 ELKTPLTSIKGFAITAMDLV---EKNSELYEYLNIIDEETDRLSRLVDELLDFSKIELNK 306 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +LS + L ++ + + +L+ A + + K + D ++QV++N++ N Sbjct: 307 IKLSFEEVELDKLIEDTVAILRPHASNDGVNLICKKKIDRVVINGDVNRLKQVLVNIIDN 366 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 +K + G V V + + I I+D G GI + EI + F +G + G Sbjct: 367 GIKACSRGKYVKVFLDI-KDKKAVIRIEDQGQGIPQEEIKYIFDKFYRGKN---NKYSGT 422 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GLGL I++ I+ H G + S++ +G LP Sbjct: 423 GLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLK 459 >gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 878 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 350 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 409 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + DI S LL L+N+ILDLS+IE+GR ELS + ++V + +I+ Sbjct: 410 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 465 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D ++ V D+ ++Q+I NL+SNAVKFT G + V V + Sbjct: 466 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEA 524 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 IKD+G GI ++ T+ F Q + G GLGL I + +++ G Sbjct: 525 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 584 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S G + Sbjct: 585 GKLVATSTKGVGTCFGFSI 603 >gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 1945 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 25/390 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +++ + G ++ L ++ +LT T IA+ ++ ++ M + Sbjct: 1103 LNVVVLPVLFEGQVTAVIELASFRRFSEIHLTFLDQLTESIAIVLNTIAASMRTEELLKQ 1162 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L Q + + A L + L ++N ++ Sbjct: 1163 SQSLAEELQAQQKELTETNKRLEQQAQSLRASEELLKSQQEELQQTNEELEEKAELLALQ 1222 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ R+ EE + KS FLA+MSHELRTPLN++L + ++ Sbjct: 1223 NQEVERKNREIEQARRSLEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSEN 1282 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 T G L + +Y I+ +G LL LIN+ILDL++IE+G + + D+ Sbjct: 1283 TDGNLTLKQV-DYTRTIYSAGTDLLGLINDILDLAKIESGTMSVEIEQVLFTDLRDHLDR 1341 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + AQ+K + ++ ++ ++ D K ++QV+ NLLSNA KFT G V ++V Sbjct: 1342 TFRQVAQDKKLSFLIELSGAVPKGLYTDAKRLQQVLKNLLSNAFKFTER-GEVKLSVEVA 1400 Query: 397 SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 S+ D G GI+ + + +F Q + G GLGL Sbjct: 1401 REGWSLEIETLTNSATVLAFSVSDTGIGISPEKHRVIFEAFQQADGSTSRKYGGTGLGLS 1460 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I++ I GG+ + S+ EG +P Sbjct: 1461 ISREIANLLGGEIQLTSRPGEGSTFTLYMP 1490 >gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 792 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 3/317 (0%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 +P + FP+ A S V+ + + AL + + V ++ Sbjct: 471 VPEIADCAGFPLRAATIAAGFRSALVVPLIAPDGVLGALVVESGKHGPFAANKVSLMQAF 530 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 A + L ++E ++ + KSRF A+MSHELRTPLNAILG++E++ Sbjct: 531 AHQSVLAMRNARLFRKAEENGRQLAVASEHKSRFFANMSHELRTPLNAILGYAELLRDGL 590 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L + K + + +G HLL LIN++LDLS++EAG L S+ +IV + I Sbjct: 591 YGEL-PDRAKSVLERVESNGAHLLGLINDVLDLSKLEAGELSLVLDEYSMRNIVEQAIGA 649 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 AQ K + I Q I+ + DE+ + QV++N+LSNA+KFT G V + + Sbjct: 650 TYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLINILSNAIKFTDE-GYVAIKAQTLAD 708 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D GPGI + + +F QG + G GLGL I++ + HGG + Sbjct: 709 -MFEIVVTDTGPGIPPEDQARIFEAFQQGDNTSTRLKGGTGLGLSISRRFVEMHGGAISV 767 Query: 459 RSKLREGVEVIAILPNT 475 SKL EG ++P Sbjct: 768 ASKLGEGSSFTILVPIR 784 >gi|153812172|ref|ZP_01964840.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174] gi|149831827|gb|EDM86913.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174] Length = 971 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 159/363 (43%), Gaps = 13/363 (3%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 L+ + + + A+ S + + ++ + S Sbjct: 439 ASQALIYDNRQNFKSFPLTNTMEACFAVRGGEGSLLSILNKTLKAMPSDMLTSALAIYDS 498 Query: 182 M-------HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + ++ + TA I + K +A + + Sbjct: 499 TPDKVTFLDFIKDNMLAFIVTAGFLSLVIIGIILVLLWKARKAEAAAKLAANDTQKLNDK 558 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + K+AE+ + AK+RFL +MSH++RTP+NAILG+++++E E + + EY+ + Sbjct: 559 LEIALKKAEDASFAKTRFLNNMSHDIRTPMNAILGYAQLMEDE-LKEKDLPEISEYLKKL 617 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +SG LL++IN +LD++RIE+GR E+ E+ + DI + + A++KNI + I Sbjct: 618 QQSGNLLLSIINNVLDMARIESGRMEIDENYGMIEDIWQTLFEIFDDEAKKKNIALHYTI 677 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNG 409 + + D ++++ +N+LSN +K+T GG V + + G + D G Sbjct: 678 NVEHEHILTDVTKVKEIFVNILSNTMKYTPSGGSVMINIDELPCSGPGYMIVRTRVSDTG 737 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+++ + + +F + KS G GLG+ I + + GG + S+L +G Sbjct: 738 IGMSQEYLTNIFEAFTRERNTTKSKIAGTGLGMSIVKKYVELLGGTIDVESELGKGSTFT 797 Query: 470 AIL 472 L Sbjct: 798 VTL 800 >gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1223 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 604 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 663 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 664 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 719 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 720 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 778 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 779 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 838 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 839 LVTLMGGRMWVESDVGKGSVFYFT 862 >gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 134/272 (49%), Gaps = 13/272 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + + R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 266 RVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 381 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 438 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 439 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494 Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 S+ +G A+LP ++ P + + + Sbjct: 495 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 526 >gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1013 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 17/237 (7%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+NAILGF ++++ + Y+ I SG+ LL LIN+I Sbjct: 531 KSEFLANMSHEIRTPMNAILGFCDLLKDRI----TEPQTRGYVDLISASGKTLLELINDI 586 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LDLS+IEAG+ EL+ + L ++++E + +A +KN+ + +I ++ ++ DE Sbjct: 587 LDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIR 646 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGE 416 +RQ++ N++ NA+KFT G V ++V + +S++D+G GIA+ + Sbjct: 647 LRQILFNVVGNALKFTEQ-GYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQ 705 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +F Q G GLGL I + + G+ ++S++ +G I P Sbjct: 706 QIRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQSEVGKGTIFKFIFP 762 >gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] Length = 614 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+A+ SHEL+TP+ A+ GF+E + + + +T +E++ ++R Sbjct: 363 RRLE---KVRSDFIANASHELKTPVTALKGFTETLLDGAL--EDEDTAREFVEIMNREAN 417 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSL 358 L LIN+ILDL++IE + + L ++ E + L++ A E +E+ D + Sbjct: 418 RLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVHYDNDLEAG 477 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGE 416 +E ++Q++ NL++NA+K+ GG+V ++ T ++I+DNG GI + + Sbjct: 478 IRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDED 537 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 IP + F + +A G GLGL I ++++A+ G+ + S+L EG LP Sbjct: 538 IPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPK 595 >gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244] gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244] Length = 936 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 24/366 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182 L+ P L YK L+A + L + VF P+ + Q + + Sbjct: 156 LMIELNNHPLELARYKILLSLVATGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236 + + I + + + L + + +L + Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R +A N +KS FLA++SHELRTPLN+I GF ++ + + Y+ I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S HLL LIN++LD S+I+AG+ EL + L + + + + ML A +K+I + Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 ++ V D +Q++ NL+SNA+KFT G + V V + S++D+G Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465 G++ + + SF QG ++ G GLGL I++ ++ GQ +G Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMRGQIGFEDNQERAPTEKG 511 Query: 466 VEVIAI 471 Sbjct: 512 STFWFT 517 >gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1015 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 628 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 687 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I + LL LI++ILDLS+IEAG E S I L +++ L+L+ Sbjct: 688 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 743 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 + ++++ + V ++ + Q+I+NL++NA+KFT+ G + G+ G+ Sbjct: 744 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 800 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + + ++ F + S QG GLGL I ++++ + GG + S+ Sbjct: 801 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 856 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 857 EGKGSTFWFSLP 868 >gi|13591555|dbj|BAB40947.1| histidine kinase [Magnaporthe grisea] Length = 1307 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 754 DTDLTQY----QREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNA 809 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A +K +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 810 LKTLAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868 Query: 395 WTSG-------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 869 KGNDVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKR 928 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG ++S+ +G Sbjct: 929 LVNLMGGDVWVKSQYGKGSSFYFT 952 >gi|262381160|ref|ZP_06074298.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262296337|gb|EEY84267.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 795 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + F IL + E E + L + + A+ N AKS FL+ MSH++RT Sbjct: 239 LRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRT 298 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G + + + + E + + I S + LLNLINE+LD+S++E+G L+ Sbjct: 299 PMNAIIGMTTIASMHI---DDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLT 355 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVK 381 + + ++++ I M+Q +K + + D + ++QV+LNLLSNA+K Sbjct: 356 DEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQVKHEKLIGDVQRIQQVLLNLLSNAIK 415 Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +T G++ + + +++ DNG GI + V F + A Q Sbjct: 416 YTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQ 475 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLG+ I+++I G+ + S+ +G + ED+H Sbjct: 476 GTGLGMAISRNIAHMMNGEIQVESEYGKGSVFTFTMQLKLQDQGCFEDDH 525 >gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 894 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 15/353 (4%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 G + +A++ A + + V VA + + I+ Sbjct: 189 GPIASFQSIMNNRLEAELAVARQATTKAAILQTVLAVIIICAVAGLIRILFRQVTSPINQ 248 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRA 242 SF + ++++ + L + + + A+ ++ A Sbjct: 249 YTERLKVFSFRDEKFSLVPDGSLELRMLAQTFNALSNSFQEELVKRKKAEETMKAAKEEA 308 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N AKS FLA MSHE+RTPL+ I+G+ ++E + E EY+ ++ + ++LL Sbjct: 309 ETANKAKSEFLAQMSHEIRTPLHTIIGYQYLLENTFL----EEKQTEYVRNLGLASKNLL 364 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +INEILD S++EA + L L ++ + ML++ + K ++ I P + + Sbjct: 365 EIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKKLQFNFTIKPDVPRYL 424 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIP 418 D ++QVILNLLSN +KFT G ++ V + R + D G GI + +I Sbjct: 425 KGDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCFHVADTGIGIPQRQIE 484 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + F QG + G GLGL I++ I+ GG ++S + EG Sbjct: 485 QLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKSVVGEGSTFSFT 537 >gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2] Length = 912 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 173/313 (55%), Gaps = 9/313 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-SNVKILSCQAEKDDLIAELEVA 231 A + + ++ V ++ +L + +++ + + + ++ A D IA EV Sbjct: 365 AAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVT 424 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + R AE N AKSR++ +SHELRTPLN+ILG+S++++ + +E K + Sbjct: 425 SKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQ---EQLSEQGKMAL 481 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I RSGQHL +LI+ +LDL+RIE G+ L+ + + + + I M Q + ++KN++ Sbjct: 482 GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFV 541 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 +I +L V D+K + QV++NLL NA+KFT G + + V + + Y I+D G Sbjct: 542 YEIGENLPHYVRTDKKRLEQVLINLLGNALKFT-TSGTITLKVEYR-FQTAYFEIRDTGC 599 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV-- 468 GIAE ++ + F +GS ++ G+GLGLPI + ++ GGQ + S+L +G + Sbjct: 600 GIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKI 659 Query: 469 IAILPNTRVLNFI 481 LP+ V++ I Sbjct: 660 KFYLPSKEVVHPI 672 >gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] Length = 986 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 142/252 (56%), Gaps = 9/252 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 E + AE N AKS FL++MSH++RTP+NAI+GF+ + + + ++ Sbjct: 455 KMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DDKKRVQD 511 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL +++ + ++ + K +E Sbjct: 512 YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIHAKQLE 571 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYI 403 ++ +D + V+ D+ + QV+LNLLSNAVKFT GG V V + I Sbjct: 572 LYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCHGTQKGSELYEI 631 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KDNG G+++ + + + F + + S QG GLG+ I ++I+ GG ++++ Sbjct: 632 RVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQD 691 Query: 464 EGVEVIAILPNT 475 +G E I LP Sbjct: 692 KGTEFIVRLPFR 703 >gi|91777004|ref|YP_546760.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710991|gb|ABE50919.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 713 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 93/422 (22%), Positives = 172/422 (40%), Gaps = 21/422 (4%) Query: 65 WFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 + + +W +T + ++ + + +V Q+ + L+ Sbjct: 24 LELEQAVIRIWLGMTFLS----FLVYREFTAPNPISDNFPLAIPMTVVFQVLSFTLFGLI 79 Query: 125 TLVEPGTWTPEYLTIYKSATL-LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + L + ++++ +L F + ++ Sbjct: 80 LFTTKHAALRRLSGAWLDIGLPTMFMAMTGELGVILVGVYLWVTFGNGFRFGKKYLLHSQ 139 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 L + F+ + + +++ LI +E E R++AE Sbjct: 140 ALSLIGFLYTINVNPFWLEHKAISYSLLLMLVALPLYVATLITRIE-------EARQKAE 192 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AK+RF+A+MSHE+RTPLN I+G S ++ + N E + + S + LL Sbjct: 193 VANHAKTRFVANMSHEIRTPLNGIIGISTLLRNTQL----NPEQDELLRTLESSSKLLLA 248 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 +N +LD S+IE + ++ ++ +SL D+ + I + + +A K I + + I V + Sbjct: 249 QLNNVLDFSKIEQEKMQVEKTELSLRDLAEQTIEVFKGQALHKRIRLEKDIRIDDVRVKS 308 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY-ISIKDNGPGIAEGEIPT 419 D ++Q++ NL+ NAVKFT G V ++V T+ G Y I + D G GI++ Sbjct: 309 DPYILQQILANLVGNAVKFTEQ-GAVTLSVHALETTADHGVYRIEVVDTGIGISDEHRER 367 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + SF Q I+ G GLGL IA+ ++ G + + S L G L V Sbjct: 368 IFESFTQADISTTRKFGGSGLGLTIAKRLVEALGSELHLSSSLNAGSRFWFDLSLDIVAP 427 Query: 480 FI 481 Sbjct: 428 AP 429 >gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9] gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9] Length = 680 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N KS FLA+MSHE+RTP+N I+G S +++ M + KEYI ++ S LL+LI Sbjct: 74 NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----PKDQKEYIQMLNISSLSLLDLI 129 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 N+ILD S+IEAGR EL ++++L ++ +E + ++A EK+I ID + + D Sbjct: 130 NDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGD 189 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 +RQV+ NL+SNA+KFT G VH+ + + D+G G++ + V Sbjct: 190 ATQLRQVLNNLVSNAIKFTHT-GYVHLHTQLETDTDTETTIRFEVIDSGIGVSADKHEAV 248 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLN 479 F Q + G GLGL I + I+ GG+ I S++ +G + + VL Sbjct: 249 FDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKISSEVDKGSTFYFTITFEKNVLV 308 Query: 480 FIPEDNHES 488 ++ ++ Sbjct: 309 SASLEDSKA 317 >gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 873 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 8/274 (2%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 ++ + LS + E + ++ + + AE N AKS FLA+MSHE+ Sbjct: 228 VMLSVSAVRDEWGRLSRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEI 287 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAI+G +++ + ++Y+ I + LL ++N++LD S+IEAG+ + Sbjct: 288 RTPLNAIIGLGQLLLDSGLDS----RQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQ 343 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNA 379 L + ++ + + L A+ K + ++ +DP V D + QV+ NL+ NA Sbjct: 344 LDTVDFRIEAVLDQLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNA 403 Query: 380 VKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VKFT G + + S++D G G+ + I + SF Q +I Sbjct: 404 VKFTERGFVELRIRALREDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYG 463 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I++ + GG +RS+L G Sbjct: 464 GTGLGLSISRQLAQLMGGDIRVRSRLGIGSVFRF 497 >gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 828 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E ++RAE + KS FLA+MSHE+RTP+NA++GF++++ + Sbjct: 255 ITERKRVEQALIEAKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDTDL----T 310 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y +SG+ LL+L+N+ILD S+IEAG + + + +++ R + Sbjct: 311 DDQRDYAMTAKKSGESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVIRPRVE 370 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +EI + + S V D RQV++NL+SNA KFT G + +++ + I Sbjct: 371 SKPVEILCHVGADVPSFVKGDPGRYRQVLVNLMSNATKFT-ESGEIELSLDVEAEEADRI 429 Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D GI E ++ + F Q ++ G GLGL + + + G + Sbjct: 430 KFHATVRDTAMGIPEDKLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVE 489 Query: 460 SKLREGVEVIAI 471 S++ +G Sbjct: 490 SEVNKGSIFHFT 501 >gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 597 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + + E KE I+ + Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 421 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG EL + L+ + I A+EK IE+ + + Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAF 481 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T GG V + + SG G I ++D+G GI E ++P V Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA++I+ H G + SKL EG LP Sbjct: 541 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 1792 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 110/500 (22%), Positives = 197/500 (39%), Gaps = 31/500 (6%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS----L 77 L E ++ D+ + + L ++ + +L++ + L Sbjct: 889 RLTTERGAEQDWLKTNLARFTNLLQGQRDLVTVGRMLLSELAELIGAQNGVIYQVEGDEL 948 Query: 78 ITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYL 137 L+ YA + +++ + +G+ +L+ + + L + T L Sbjct: 949 TLLSAYADDGDHPRRIAFGEGLVGQCARDGRRILISDLPPNVLPIRSGLFKAAPRTAIVL 1008 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I + +++L+ FL + + +I + L A Sbjct: 1009 PILFEGEARAVIELASLNPLTELQISFLEQLTASIGIVLNSIAVSMQTEGLLGQSQQLAT 1068 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKS 250 T L ++N +I + ++ E+E ++ R+ EE + KS Sbjct: 1069 ELLARQTE-LQQTNEQIELKAQQLEERNNEVEAKNQQIEQARRALEEKAGELALTSKYKS 1127 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+IL + + L++ E IH +G LLNLI++ILD Sbjct: 1128 EFLANMSHELRTPLNSILILGQQLSDNVEHNLSD-RQVECARTIHAAGSDLLNLISDILD 1186 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 LS+IE+G + IS +++ + A+ + + + LS + D K ++ Sbjct: 1187 LSKIESGTVSIDAEEISFAHLLQMIARPFRHEAESRGLSFDVEATEGLSGHIVTDVKRLQ 1246 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGE 416 Q++ NLLSNA KFTA GG V + V + + D G GI+ + Sbjct: 1247 QILKNLLSNAFKFTAAGG-VSLKVAPAASGWSADNLSLARAKGVVAFKVADTGIGISAEK 1305 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + +F Q G GLGL I++ + GG+ +RS EG LP Sbjct: 1306 QKIIFEAFQQADAGTSRKYGGTGLGLAISRDLAQLLGGEIQLRSVPGEGSVFTLYLPLAY 1365 Query: 477 V-LNFIPEDNHESTQYKCYA 495 + P H+ + + +A Sbjct: 1366 TNVEVAPRAAHD--EGRTFA 1383 >gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 870 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 9/286 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + LSF T + ++ ++ A++ + E + + + ++ AEE + KS Sbjct: 437 GRVLGTLSFGTRTRSSFSEDDLSLMKAVADQVAIAIERNLMEESLRQAKQAAEEASRTKS 496 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 RF+A+MSHELRTP+ +LG ++ + +YI RS + LL ++N++LD Sbjct: 497 RFVANMSHELRTPMTGVLGMLDLALQSC----DETERTDYIETAQRSARSLLRILNDVLD 552 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 L+++EAG++ L SL + + + ++ + K +E+ +I+ L V D+ +R Sbjct: 553 LAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELALQIEDHLPDHVLGDQVRLR 612 Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425 QV+ NL+ NAVKFT G R+ + G S +G S++D G GI + + + SF Sbjct: 613 QVLTNLIGNAVKFTERGSVRIALRAGGRSPQGPMEFRFSVRDTGIGIPQDKRHLLFVSFS 672 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q + + G GLGL I++ I+ GG + + EG Sbjct: 673 QLDDSNTRSYGGTGLGLAISKEIVERMGGSIALEGEKGEGSCFSFT 718 >gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 1152 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 23/312 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--------------KRAEEENLAK 249 + L +S++++ QAE + +L + ++ + + E+ + K Sbjct: 425 SRALKESHLRLEQQQAELEQTNVQLSEQARILEQQKDDLNRSAADIALKAQELEQASRYK 484 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN+ L ++++ G L E K + I SG LL LIN+IL Sbjct: 485 SDFLANMSHELRTPLNSSLILAKLLADNRDGNLTEEQVK-FARTIQSSGNDLLALINDIL 543 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368 DLS+IEAG+ +++ +S + + M + A EK + + +L ++ +D + + Sbjct: 544 DLSKIEAGQMDINAEPVSFRRLASDLTRMFEPLAGEKGLTFRVEAHDTLPDLFDSDRQRL 603 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV+ NLLSNA+KFT G V + + + + ++ D G GI+ + ++ +F Q Sbjct: 604 EQVLKNLLSNALKFTER-GSVVLRMSA-ANNKVHFAVSDTGIGISAEQQQSIFEAFRQAD 661 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN----TRVLN-FIPE 483 I G GLGL I++ + GG ++S+ EG ILP +V +P Sbjct: 662 STISRKYGGTGLGLSISRELSRLLGGHIELKSEPDEGSIFTLILPLIYDPQQVAPREVPR 721 Query: 484 DNHESTQYKCYA 495 E + +A Sbjct: 722 SAPEPQIIETFA 733 >gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 660 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + ++ R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMH 381 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 382 RRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDE 438 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494 Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 S+ +G A+LP +N P + + + Sbjct: 495 SEFDKGSLFWAVLPCQFESVNSEPTSSRRNNE 526 >gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7] gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7] Length = 419 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F+ + SHEL+TP+ A+ GFSE + M + E K+++ + Sbjct: 189 RRLE---KVRTDFVTNASHELKTPVTALKGFSETLLDGAM--EDKEVLKQFLEIMLAESS 243 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N+IL+LS++E + L I+L + V +++ +A EK +++ + +L Sbjct: 244 RLDFLVNDILELSKLEQKQVPLKIEEINLTEAVISTFQLVKQKADEKKMKLNIIEEDNL- 302 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D ++Q++ NL++NAV +T G V VT+ I + DNG GI E E Sbjct: 303 FITGDSSRLKQILANLINNAVVYTQESGEVEVTIK-KENNFAVIKVSDNGIGIPEDEQDR 361 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A G GLGL I + ++ N G + SKL G I LP Sbjct: 362 IFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGFITVESKLGLGTTFIVKLP 415 >gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633] gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 882 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E + ++ A N AKS FLA+MSHE+RTPLN I+G +E++ + Sbjct: 354 QVNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL 413 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + DI S LL L+N+ILDLS+IE+GR ELS + ++V + +I+ Sbjct: 414 SPH----QQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILF 469 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D ++ V D+ ++Q+I NL+SNAVKFT G + V V + Sbjct: 470 QSKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEA 528 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 IKD+G GI ++ T+ F Q + G GLGL I + +++ G Sbjct: 529 LEQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMG 588 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S G + Sbjct: 589 GKLVATSTKGVGTCFGFSI 607 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 5/366 (1%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 WT++ + + + L+ A++++ L +A L+ ++ + A+ Sbjct: 312 AWTVVAEADRDAAFANSSQLRNALFLIGAVAVTGLGLLSFVFANALTRPVRRLSEAASAV 371 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + + + + ++ L +K+ AEL+ E Sbjct: 372 ATGSLNEALPEYERPVEYARLSRAVNQMRRALRDQLDMIRDKN---AELQENLRQIGEKN 428 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + EE + K RFLA+ SHELRTPLN I+G E +E MG + + I S + Sbjct: 429 AKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDML-PAQASQLRLITFSAR 487 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L++++LD+ RI GR L + +R + +LQ Q + + L Sbjct: 488 RLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVDLPGDLP 547 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 ++ AD Q++ NLLSNAVK+ G V++T ++I+D+GPGIA + Sbjct: 548 ALTADPVRFEQILFNLLSNAVKYGG-GSEVYITAEERPSGHVALAIRDHGPGIAADSMER 606 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + Q G GLGL IA+ + G + S EG E +LP + + Sbjct: 607 IFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSSTPGEGSEFRVVLPLSDLPA 666 Query: 480 FIPEDN 485 P + Sbjct: 667 VAPLEE 672 >gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 636 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 143/330 (43%), Gaps = 5/330 (1%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I ++ A+ F + ++ + S LA + Sbjct: 21 ITMAGRAVMAFSAGFGGAYGLLLGSNPETSGYDPHAFAVGASFLFALACLALAVQTMRLR 80 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + +++L+ E + + R+ A+ N AKSR LA SHE+RTPLN Sbjct: 81 RMRGRLRLLTASQEPPPDLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNG 140 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S ++ + + Y + SG+ LL L +E+LD +RIEAG+ EL Sbjct: 141 IIGMSRLLLDTPL----SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPF 196 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ + I +L RAQ + +EI ID L + D +RQV+LNL NA+KFT Sbjct: 197 VLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIGDAARLRQVLLNLCGNAIKFTET 256 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG + G I ++D G GIA + F Q I G GLGL I+ Sbjct: 257 GGVALIVERGDQSDGLRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSIS 316 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I++ GG+ + SK EG LP + Sbjct: 317 DRIVSVMGGRIALESKPGEGSTFTITLPLS 346 >gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] Length = 536 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 144/275 (52%), Gaps = 10/275 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++T S ++++ + E ELE + + +++AE+ K FLA+MSHE+R Sbjct: 113 FVTSAKVDSFIQLVRNEREIKRKNLELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIR 172 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N I+G + +++ T+ P + E + S LL +IN+ILDLS+IE+G++++ Sbjct: 173 TPINGIIGLASLLKKTTLSP-DQEEMIRLLEI---SSDSLLGVINDILDLSKIESGKFKI 228 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + + +I + +L++RA EK +++ DP+L + + AD + Q+++NL+ NA+ Sbjct: 229 NRAETDVIKTCTDVTNLLRIRAMEKKLDLITDYDPALPNLIMADSLRLNQILMNLIGNAI 288 Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFTA G V + V +G S+ D G GIA+ +I + +F Q Sbjct: 289 KFTAS-GSVTLKVEALDKKGNNIQVRFSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFG 347 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I +++ GG + S+ G Sbjct: 348 GTGLGLSIVKNLAELKGGILEVFSEEGHGSTFCFT 382 >gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 636 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 142/330 (43%), Gaps = 5/330 (1%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I ++ A+ F + ++ + S LA + Sbjct: 21 ITMAGRAVMAFSAGFGGAYGLLLGSNPETSGYDPHAFAVGASFLFALACLALAVQTMRLR 80 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + +++L+ E + + R+ A+ N AKSR LA SHE+RTPLN Sbjct: 81 RMRGRLRLLTASQEPPPDLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNG 140 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G S ++ + + Y + SG+ LL L +E+LD +RIEAG+ EL Sbjct: 141 IIGMSRLLLDTPL----SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPF 196 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ + I +L RAQ + +EI ID L + D +RQV+LNL NA+KFT Sbjct: 197 VLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIVDAARLRQVLLNLCGNAIKFTET 256 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG + I ++D G GIA + F Q I G GLGL I+ Sbjct: 257 GGVALIVERGDQSGELRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSIS 316 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I+A GG+ + SK EG LP + Sbjct: 317 DRIVAAMGGRIALESKPGEGSTFTITLPLS 346 >gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 576 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 142/277 (51%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V ++V S Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVSFAQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VIEGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565 >gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 660 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + ++ R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMH 381 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDE 438 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494 Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 S+ +G A+LP +N P + + + Sbjct: 495 SEFDKGSLFWAVLPCQFESVNSEPTSSRRNNE 526 >gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 633 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 11/288 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + I + + E + A + +TR+ AE N AKS FLA MSHELRTP+N Sbjct: 223 LGDLSRHINNLAEGLNQASREQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E M EY S +HLL +IN+ILD SRIE EL Sbjct: 283 VLGMLQLLETTEMTEEQT----EYAALASESTEHLLKVINDILDFSRIERAALELEHIPF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTA 384 +L D++ C Q AQ++ + + + L V D +RQ+++NL+ NA+KFT Sbjct: 339 NLADLINSCAQAFQHSAQQRGLTLTLGVAQGLEALKVQGDPTRIRQILVNLIGNALKFT- 397 Query: 385 IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V V W + + ++D+G GI+ + + +F Q +I G GL Sbjct: 398 EHGTVSVESDWQPLDHELVWFTCIVRDSGIGISTERLERMFDAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 GLPIA+++ GG S+ G +P + +P ++ Sbjct: 458 GLPIARTLAERMGGTLRAESEEGLGSVFTLEIPLAIDQHSLPAVAADA 505 >gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1039 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 652 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 711 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I + LL LI++ILDLS+IEAG E S I L +++ L+L+ Sbjct: 712 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 767 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 + ++++ + V ++ + Q+I+NL++NA+KFT+ G + G+ G+ Sbjct: 768 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 824 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + + ++ F + S QG GLGL I ++++ + GG + S+ Sbjct: 825 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 880 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 881 EGKGSTFWFSLP 892 >gi|317473351|ref|ZP_07932646.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899187|gb|EFV21206.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 852 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 15/266 (5%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 V D+ +++A + + AKS FLA+MSH++RTP+NAI G + + P + K Sbjct: 325 RVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAHIDDP---KQVK 381 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I S +HLL LIN++LD+S+IE+G+ L+ ISL ++V + ++Q + + K Sbjct: 382 NCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQ 441 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401 I+ + VW D + Q++LNLLSNA K+T G + + + + Sbjct: 442 SFDVHIENIFTENVWCDGIRLNQILLNLLSNATKYTPEKGSIRLFISEENSPRGEDYVRL 501 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I+++DNG G++ + + S+ + +G GLG+ I + I+ G ++S+ Sbjct: 502 HINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSE 561 Query: 462 LREGVEVIAIL-----PNTRVLNFIP 482 +G E L P V +P Sbjct: 562 PNKGTEFHIKLDFEKAPALNVNMVLP 587 >gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 596 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 144/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++ + + + A+E +E+ +++ D M QV++NL+ NA++ T Sbjct: 444 APLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 QGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ HGG+ ++S+L +G + I LP + Sbjct: 564 IVKNIVEAHGGKISVKSELGKGSDFIITLPLEK 596 >gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 718 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 25/333 (7%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V + L + + + G+L + T + S + + E Sbjct: 119 VVVPTLTGADTLVLHVLATNSRIRGMFVGILPGSHLSAEVSTLNALSSILINTAYAVENS 178 Query: 223 DLIAELE-----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +L L+ + +E +AE AKS FLA+MSHE+RTP+N ++G + Sbjct: 179 ELYDMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLA 238 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + +E + Y+ + ++LL +INEILD+S++EAG L L Sbjct: 239 KLLMETPL----DEVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRF 294 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + LR Q+K + + + D L + D +RQV+ NLL NA+KFT G + Sbjct: 295 LDRSLQPFVLRGQKKGVRVHLEADSGLPELMVGDPVRLRQVLANLLGNALKFTQQ-GSIT 353 Query: 391 VTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 +T T S+ D G GIA + + F Q + G GLGL I++ Sbjct: 354 LTAALTGSGENRVALKFSVADTGIGIAAEAMEVIFEKFSQADSSTTRLYGGTGLGLSISK 413 Query: 447 SIMANHGGQFLIRSKLREGVEVIA----ILPNT 475 S++ GG+ ++S L EG LP Sbjct: 414 SLVELMGGELSVQSTLGEGSVFSFSIEMSLPKA 446 >gi|71281799|ref|YP_269191.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147539|gb|AAZ28012.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 784 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 24/394 (6%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTW---TPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 +G + I + T + L+I + L L Sbjct: 146 NRRQLGTLIIATNLATIHARLWQTGFNILLNQTLLVVLIMLVIMFILQRLITRHLESMAG 205 Query: 165 LSFFPVVVALSTQAIMSMHVLDIS--LAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 S L +S + L ++ I + + + + + + +D Sbjct: 206 YSKAIGDGDLEAPLTLSRRQPNFPDELNQLVNALNDMRLAIRHDINRREEEKQALRYNRD 265 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +E + ++ AEE N AKS+FLA+MSHE+RTP+N +LG ++++ + Sbjct: 266 QLQQMVERRTMSLQQAKEIAEEANKAKSQFLATMSHEIRTPMNGMLGMIQLLQNNEL--- 322 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + +H S + LL + +L +++E G Y SES SL +++ I ++Q + Sbjct: 323 -TDPQSHRVKILHDSTEALLETFDHVLQFAQLEEGGYVCSESFFSLDELLHNLISLMQPK 381 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSG 398 A EK++++ + +RQ++ NLL+NA+KFT G + + V Sbjct: 382 ADEKHLQLKLDTPVTGDCYHDAAGSLRQILTNLLANAIKFTDQ-GEILLRVSHLEQSEHQ 440 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 SI+D+G GI + F Q +I G GLGL I + + GGQ + Sbjct: 441 HRLRFSIQDSGIGIEPALQQHIFERFTQADESITRRFGGTGLGLSICRQLSQEMGGQIGV 500 Query: 459 RSKLREGVEVIA----------ILPNTRVLNFIP 482 S + +G VL +P Sbjct: 501 ESTVGQGSTFWVEVKLKVAKASEFKAKAVLPELP 534 >gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048] gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048] Length = 896 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 15/283 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L +N ++ S E + +LE+ KS +E + KS FLA+MSHELRTP Sbjct: 451 AEELRTTNEQLESRTEEAEQKTTDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTP 510 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ L+++ E IH SG+ LL LIN+ILDLS++EAG+ ++ Sbjct: 511 LNSILLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIF 569 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 A ++ D+ A +KN+E+ + + + D K + Q+I NLLSNA KF Sbjct: 570 EATNISDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKF 629 Query: 383 TAIGGRVHVTVGWTS------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + IS+KD G GIA + + +F Q A Sbjct: 630 TEK-GSVSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGA 688 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + GG + S L EG +P Sbjct: 689 TIRKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731 >gi|94264862|ref|ZP_01288637.1| PAS [delta proteobacterium MLMS-1] gi|93454683|gb|EAT04948.1| PAS [delta proteobacterium MLMS-1] Length = 1089 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 20/282 (7%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + I+ + + E + AE NLAKS FLA+MSHE+RTP+NAI+ Sbjct: 457 RDSSGRIREIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSHEIRTPMNAII 516 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G SE+ + ++ + IH S Q LL +IN+ILD S+IEAG +L+ Sbjct: 517 GLSELTLQGELAA----EQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHLQLAPHPFRP 572 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +V + + A K +E+ +DP + V DE + Q+ NLL+NA+KFT G Sbjct: 573 ARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLANALKFTRK-G 631 Query: 388 RVHVTVGW------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 RV + + + G ++ D G GI + + + F Q Sbjct: 632 RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQADDTTTRKY 691 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475 G GLGL I+ ++ GG+ + S+ G LP Sbjct: 692 GGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLPQA 733 >gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24] gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1829 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + +LV G L E L + +L + ++ Sbjct: 1197 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1256 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210 + + F FL+ ++A S I ++ L+ K+ Sbjct: 1257 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1316 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1317 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1376 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L E+ IH +G LL LIN+ILDLS+++AG+ Sbjct: 1377 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1435 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + + EK +++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1436 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1495 Query: 379 AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418 AVKFT G + + S+ D G GIA ++ Sbjct: 1496 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1555 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1556 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611 >gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062] gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062] Length = 767 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 9/329 (2%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L A F +F ++ + V + + + + +F + + + Sbjct: 441 LLGAPFTTFLADESHIAALDYLDGLVANGVSSVLNDGREIICQTLDGDIFPTFLSMGRVS 500 Query: 219 AEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + L I + + A+ R +AEE N KS +L +SHE+RTPLNA++GFS Sbjct: 501 SANEQLFCAVLRDITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFS 560 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV++ E G L N YKEY DIHRS H+L LIN++LDL++IEAG+ +L+ A+S DI Sbjct: 561 EVMQEERFGELGNVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADI 620 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + EC+ +LQ +A E+ + I S+ + AD K +RQ+ LNLLSNA+KF GG+V V Sbjct: 621 INECVALLQPQANEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIV 680 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 ++ ++ ++D G G+++ ++ L F + + + +G GLGLP+ ++++ Sbjct: 681 SLVLDPNGEVHLRVRDTGHGMSKADLEAALQPFRRLNASAS--TEGSGLGLPLTKALVEA 738 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + F I S+ EG P RVL Sbjct: 739 NRASFSINSEEDEGTLAEVTFPPQRVLAE 767 >gi|167745965|ref|ZP_02418092.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662] gi|167654480|gb|EDR98609.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662] Length = 852 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 15/266 (5%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 V D+ +++A + + AKS FLA+MSH++RTP+NAI G + + P + K Sbjct: 325 RVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAHIDDP---KQVK 381 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I S +HLL LIN++LD+S+IE+G+ L+ ISL ++V + ++Q + + K Sbjct: 382 NCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQ 441 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------Q 401 I+ + VW D + Q++LNLLSNA K+T G + + + + Sbjct: 442 SFDVHIENIFTENVWCDGVRLNQILLNLLSNATKYTPEKGSIRLFICEENSPRGEDYVRL 501 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I+++DNG G++ + + S+ + +G GLG+ I + I+ G ++S+ Sbjct: 502 HINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSE 561 Query: 462 LREGVEVIAIL-----PNTRVLNFIP 482 +G E L P V +P Sbjct: 562 PNKGTEFHIKLDFEKAPALNVNMVLP 587 >gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 599 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E R + + F+A++SHELRTP++ + G+SE I + G + E KE+ Sbjct: 355 RDMTEERRH-----DKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAG--SEEDKKEFA 407 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ + L+NE+LDL+R+EAG EL A+ L + Q A+++ + + Sbjct: 408 KIIYDESLRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKDEGVALR 467 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D + QV+ NL+ NA++ T GRV V V ++ G + D G G Sbjct: 468 LDHVEDGYTNSFDPDRIEQVLTNLIHNAIRHTGENGRVTVKV-RSNEYGVKFDVIDTGSG 526 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I E ++P V F + A A G GLGL IA++I+ H GQ + SK+ EG Sbjct: 527 IPEEDLPYVFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDEGTTFSFF 586 Query: 472 LP 473 +P Sbjct: 587 IP 588 >gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 509 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 154/296 (52%), Gaps = 4/296 (1%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + ++ + + L + + A E + ++ E +K AE N AKS FLA Sbjct: 204 VLIGVLFFVIAGSVSAAILRLQLLRQATAIAAVTER-ERMAVEGQKAAEAANQAKSEFLA 262 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 MSHELRTPLNAI+GFSE++ GPL Y DI +SG+HLLN+I ILDL+ Sbjct: 263 MMSHELRTPLNAIIGFSELMASGLHGPL-PPRQHGYAKDIQQSGRHLLNVIGNILDLAEA 321 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E+ + L E I L ++ C+ ++ +A E +++ + P+ + D +RQ +LN Sbjct: 322 ESKQINLFEVDIELEAVIEPCLRLIAPQASEGRVQVTATL-PTGVRLLCDVTKLRQTLLN 380 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT GG V V+V I++ D G GI ++P +L F Q + + Sbjct: 381 LLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTGIGIRPEDVPRILKRFEQVESQMHRS 440 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHEST 489 +G GLGLP+A+++ HGG + S G ILP TRVL P D S Sbjct: 441 REGAGLGLPLAKALTEAHGGVLEVTSDFGHGTTARIILPATRVLVQPDPIDAAASP 496 >gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1788 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 16/296 (5%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ +S ++ + I++++ + ++ A+ N AKS FLA+MS Sbjct: 887 LVWERVSISAVRSADGQITHYLGIKEDISQMKEDQERLAHAKESADLANRAKSSFLANMS 946 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NAI+G + + T+ ++Y+G I + LL +IN+ILD+S+IEAG Sbjct: 947 HEIRTPINAIVGMCHLAQRMTV----EPKLRDYLGHIQVAADTLLGIINDILDVSKIEAG 1002 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + + L +++ + + L+AQ+KN+E+ ++P + V D + Q++ NL+ Sbjct: 1003 KLHFEDIPFKLDELISRVMRLQGLKAQDKNVELVIDLEPQVPQTVVGDPLRISQILTNLV 1062 Query: 377 SNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 +NAVKFT G V V + Y ++D+G G+ + ++ + T F QG ++ Sbjct: 1063 NNAVKFTEQGEVVLSVKLQGVFDGRVTLYFEVRDSGIGMEDAQLQRLFTPFQQGDDSMTR 1122 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILP------NTRVLNFI 481 G GLGL I Q+++ GG + S+L EG LP RV Sbjct: 1123 RYGGTGLGLSICQNLVKMMGGHLQVESRLSEGSRFYFTVSLPIHQAPALERVDQTS 1178 >gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335] gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners AB-1] gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335] gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] Length = 612 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +S+ D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] gi|151282246|gb|ABR90656.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 10/256 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +L ++ + AE N AKS FLA MSHE+RTP+N +LG ++ + Sbjct: 305 RNLEHQVVERTRDLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQL----ALAE 360 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ T +E++ S + LL+++N+ILD S++E+G + + L+ + I ++ Sbjct: 361 TSDRTQREHLETAQYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMAS 420 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 R+ + ++ + + + + D +RQV+LNL++NA+KFT GG V + V + Sbjct: 421 RSCDASLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTEQGG-VTLKVALLNLNA 479 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+ D+G GIA + +F Q +I G GLGL I + I+ GG Sbjct: 480 GQARMRFSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSI 539 Query: 457 LIRSKLREGVEVIAIL 472 + S +G E L Sbjct: 540 GVHSAEGKGSEFWFEL 555 >gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 797 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 11/295 (3%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 A S + L + +EK+ LI + +E RA A++ FLA Sbjct: 242 AESRLKTYSEQLEQIVDSRTKELSEKNKQLIKSNHDLRVAKEEAVSRA----KARADFLA 297 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP N +LG + E + +E KE + + SG LL L+N+ILD+S++ Sbjct: 298 NMSHEIRTPFNGVLGMISLTLEEPL----SEKQKEQLNVAYSSGVALLELLNDILDISKV 353 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG+ L A L V + +L A KN+ ++ IDP+ V+ D +RQ++ Sbjct: 354 EAGKLTLENIAFDLRKTVEDVSRLLAQNAHAKNVALYTNIDPAFPERVYGDPTRIRQIVS 413 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL NA+KFT G V V++ + I + D G GI + + + F QG I Sbjct: 414 NLTGNAIKFTET-GSVTVSLSLLKNQSVEICVSDTGIGIEADRLEFIFSPFSQGDADITR 472 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL + + ++ + GG+ + S+ G + LP N ES Sbjct: 473 KYGGTGLGLTLCRQLVTHMGGKIEVVSERGRGSSFMVTLPLLADHNTPSPKVDES 527 >gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969 >gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +KS FLA+MSHE+RTP+NAI+G ++ P +Y+ I S LL LI Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLHDYLEKITGSAATLLTLI 468 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ + + L +I+ + ++ +A EK +E+ +D + D Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGD 528 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 + QV++NL SNA+KFT G V ++ ++++D G G++ +I + Sbjct: 529 PHRLGQVLINLTSNAIKFTQQ-GEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERI 587 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q A G GLGL IA ++ GG+ + S G Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638 >gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1829 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + +LV G L E L + +L + ++ Sbjct: 1197 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1256 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210 + + F FL+ ++A S I ++ L+ K+ Sbjct: 1257 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1316 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1317 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1376 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L E+ IH +G LL LIN+ILDLS+++AG+ Sbjct: 1377 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1435 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + + EK +++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1436 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1495 Query: 379 AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418 AVKFT G + + S+ D G GIA ++ Sbjct: 1496 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1555 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1556 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611 >gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 917 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 3/315 (0%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 A + + + + + + + + + ELE+A Sbjct: 604 AERLLSGSIGSASARVMVSSIIKGEALSFEGVMEILDATSRAIEYSRRLEQKSRELEMAT 663 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +R +E + K F++ +SHELRTPL +I F E++ L+ E KE++ Sbjct: 664 DELRRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNP--ELDAEQRKEFLQ 721 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + + + L LIN++LDLS+IE+G E + L +V+E + + +++ Sbjct: 722 VVVKESERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQV 781 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPG 411 K + + D + Q+++NLLSNA KFT GRV V+V S R + ++DNGPG Sbjct: 782 KAPEQPTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSARKLELRVQDNGPG 841 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+E E + F Q S +G GLGL I + IM H G + S+ G I Sbjct: 842 ISEAEQRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFICE 901 Query: 472 LPNTRVLNFIPEDNH 486 P ED Sbjct: 902 FPVGDRRAATGEDES 916 >gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 608 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + +I + + ++ Sbjct: 370 EKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAW--QDKAIAPRFIEVVQTETERMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L++S ++ + + I +L + +NI +KI + Sbjct: 428 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELT-KSENITFVRKIPKEAIFIE 486 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + QV+ N++SNA+K++ GG++ V + +S+ D G GI +G++ V Sbjct: 487 IDKDKITQVLDNIISNAIKYSPQGGKITFRVRELAD-EIIVSVSDEGVGIPKGDLAKVFE 545 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 546 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLPLER 599 >gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 468 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 99/444 (22%), Positives = 179/444 (40%), Gaps = 29/444 (6%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 L + L LL A + L A + N + Y Sbjct: 9 LLATAVFAILLTLLCALFVFYGVYRKQVIG----DLKADALVMKNMHIFDNISDLHPDAY 64 Query: 105 VWRI---WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + V + + + I+ +A + + L Sbjct: 65 DLNPDTLRITVVNANGSVIFDSNADFSVMENHEDRPEIHMAAK--VGEGSGTRRSTTLDR 122 Query: 162 AVFLSFFPVVVALSTQAIMSMHV-------LDISLAGMLATALSFFTYITYHLFKSNVKI 214 +F + + + +++ G+ F + + K+ V Sbjct: 123 NLFYYAIRIDNGRILRIAREGDNIFALTQNMMMTVVGVFVLLFFFCIMMANYFTKNLVAP 182 Query: 215 LSCQAEKDDLIAELEVAKSL---SDETRKRAE---EENLAKSRFLASMSHELRTPLNAIL 268 + AE K L ++ R++ E + + + F A++SHEL+TPL AI Sbjct: 183 IEQMAENLSEPGTQAAYKELVPFMNKIRQQHEDILKSSQVRQEFTANVSHELKTPLTAIS 242 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G++E+IE G E + + +IH++ LL LIN+I+ LS+++ G+ ++ + L Sbjct: 243 GYAELIEHGMSG----ENTERFASEIHKNAARLLTLINDIIQLSQLDGGKKDVEYRDLDL 298 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + REC+ MLQ+ AQ++N+ I + + V+AD++ M ++I NL NA+++ G Sbjct: 299 FPLARECVDMLQMNAQKQNVTIRVQGGEAP--VFADKQLMEELIYNLCDNAIRYNKKDGT 356 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V VT G ++S+KD G GI+ V F + + A G GLGL I + I Sbjct: 357 VTVTTGI-ENGHTFLSVKDTGIGISAEHQERVFERFYRVDKSRSKATGGTGLGLAIVKHI 415 Query: 449 MANHGGQFLIRSKLREGVEVIAIL 472 +A HG + + S+ +G E+ Sbjct: 416 VAQHGAKLTLESEQGKGTEIRVEF 439 >gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] Length = 729 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 4/261 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +K L + E E + K+ FLA+MSHELRTPL ++G S + Sbjct: 327 ELQQQKATLEQRVNERTQALREALSAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLL 386 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +GPL +EY+ IH SG HLL LIN ILDLS E GR +L SA S+ + +C Sbjct: 387 RWPLGPLT-AKQREYLEIIHESGTHLLELINSILDLSEAELGRSQLHRSAFSIRQLCADC 445 Query: 336 IIMLQLRAQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + +++ +A + + + I P+ W D + ++Q+++NLLSNA+KFT G V + Sbjct: 446 LEVVKPQAHRHQVNLRHQLMIPPTRDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRA 505 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 W ++D G GI + F Q + A G GLGL + + + H Sbjct: 506 WWKED-ELIFQVQDTGIGIPAHLQSLLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHH 564 Query: 454 GQFLIRSKLREGVEVIAILPN 474 G + S +G LP Sbjct: 565 GWIDVDSTEGKGSTFTVGLPA 585 >gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] Length = 806 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + R +AEE + KS FLA+MSHE+RTPLN+I+GFS ++ + Sbjct: 567 ITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAET----DDR 622 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + + LL L+++ILDLS+IE+G ++ S + + + + I L+++ Sbjct: 623 EERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSLEMKVP 682 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +F+K P ++ D+ QVI N ++NA+KFT G + + T+ Sbjct: 683 ETVDLVFEKYMPD-CHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHEIKFY 740 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I ++ F + + QG GLGL I +S+++ GG+ + S E Sbjct: 741 VRDTGVGIPKEKIDSIFERFVKL----NTFVQGTGLGLSICKSLVSQMGGKIGVESTEGE 796 Query: 465 GVEVIAILP 473 G P Sbjct: 797 GSCFWFTHP 805 >gi|255008569|ref|ZP_05280695.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146297|ref|ZP_07808490.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135064|gb|EFR52424.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 639 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE +++ E + RAEE N KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 395 RLKDDLERSQADLYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILDLSR+EA + L+ ++ + R+ + +++ Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEADKVTLTPEDCDVVQLCRQALSSVEMS 511 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 +E + + D + ++QV++NLL+NA KFT G + + Sbjct: 512 RRESGNRFVFETQTESFVLQVDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI + + V F + QG GLGL I + + GG I Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGSIWIDPD 626 Query: 462 LREGVEVIAILPN 474 G + P Sbjct: 627 YERGARFVVSHPL 639 >gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC 6026] Length = 616 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +F++++SHELRTPL ++ + E + N ++ I + ++ +I Sbjct: 371 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 428 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSL 358 N++L LSR++ G ++ ++L D V + + +K I ++ Sbjct: 429 NDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKREFPHQA 488 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI ++ Sbjct: 489 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 547 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL I++ I+ H G+ S G LP + Sbjct: 548 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPYEAIS 607 Query: 479 NF 480 Sbjct: 608 EE 609 >gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21] gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21] Length = 1323 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 10/309 (3%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAK 232 +++ H + +A L + + + + +D L + Sbjct: 789 VRSVSRPHAYTMGMAAPLYDSEGKVIAVIESVRDITELKEGEEELKRHRDHLEELVRERT 848 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++RAE N AKS FL+SMSHELRTPLNAILG++++++ + +T ++ + Sbjct: 849 MELLVAKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD---NLTDTQRQQLE 905 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + G+HLL+LIN++LD+ +IEA + E+ + L ++ + + +++A EK++ Sbjct: 906 IVRGCGEHLLSLINDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEKDLGFRY 965 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGP 410 + SL V D++ ++QV+LNLLSNAVK+T GRV V V + S I D G Sbjct: 966 EELTSLPRAVRGDQRKLKQVLLNLLSNAVKYTRR-GRVTVRVDYELSSGTFVCEITDTGI 1024 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA ++ + F Q + A + +G GLGL I + ++ G+ + S+ G Sbjct: 1025 GIAPDKLNIIFEPFVQLADAGQVR-EGTGLGLSITRRLVTLMQGEVAVESEPGFGSTFRV 1083 Query: 471 ILPNTRVLN 479 LP V Sbjct: 1084 ELPLPEVTE 1092 >gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 584 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 2/228 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP+ I G++E + + + E + ++ I L L+ ++ Sbjct: 359 RRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPERAERFLLIIQNHADRLSGLVRDL 417 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS +E+G + ++L + +R+ ++++ R +EK +++ Q + +V AD + Sbjct: 418 LTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRL 477 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NLL NA+K++ G V V G +S++D+G GI E ++P + F + Sbjct: 478 EQVLINLLDNAIKYSETGKSVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVD 536 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 A G GLGL I + I+ HGG ++S+ +G LP R Sbjct: 537 EARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLPIAR 584 >gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 576 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 LIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + + Sbjct: 529 LGLAMVKQLAELHGGCVAVASVKDLGARFVVWLPIRQPESA 569 >gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 668 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 134/253 (52%), Gaps = 5/253 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + + AE+ N AKS FL+SMSHELRTPLNAILG+ ++ Sbjct: 270 ITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLF---DYDTNLT 326 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + ++ ++G HLL+LINE+LDL++IEAGR LS + ++ E + ++ AQ Sbjct: 327 PDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLAQ 386 Query: 345 EKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E+ I I + S+++AD ++Q +LNL+SNAVK+ G V++++ I Sbjct: 387 EQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLRI 446 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + V F + A A +G G+GL I + ++ GG S++ Sbjct: 447 MVTDTGRGIPDALQAQVFEPFNRLH-AELGAVEGSGVGLVITKRLVEMMGGTLGFHSEVG 505 Query: 464 EGVEVIAILPNTR 476 G LP + Sbjct: 506 VGSRFWMDLPLAK 518 >gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 947 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 14/302 (4%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + LSF T + ++ ++ A++ + E + + + ++ AE + KS Sbjct: 513 GRVLGTLSFGTRTRKTFSEDDLSLMKAVADQVSIAMERKTTEENLQQAKQAAEAASRTKS 572 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +FLA+MSHELRTP+ +LG ++ ++ +YI +RSG+ LL ++N+ILD Sbjct: 573 QFLANMSHELRTPMTGVLGMLDLALQSP----SDLERSDYIRTAYRSGRSLLQILNDILD 628 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 LS++EAG+Y L SL V E + + A+ K IE+ + L V D+ +R Sbjct: 629 LSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRKGIELELDLAQDLPARVAGDQVRLR 688 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 QV+ NL+ NAVKFT GRV V V + D G GI + + + +F Sbjct: 689 QVLTNLVGNAVKFTER-GRVTVQVEVADKTPEGESLLRFRVSDTGIGIPQDKRHLLFQAF 747 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + G GLGL I++ I+ GG+ S G R++ P++ Sbjct: 748 SQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVGSTFTFT---ARLVVPHPDE 804 Query: 485 NH 486 Sbjct: 805 QP 806 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 27/258 (10%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTPLNA++G + ++E + ++ + I +SG+ LL IN++ Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAH----QQDLVETIRQSGETLLITINDV 213 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD ++IE+G+ EL +L D + + + +A +K +E+ IDP + ++ D Sbjct: 214 LDFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTR 273 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWT----------------SGRGQYISIKDNGPG 411 +RQ+++NLLSNA+KFT + G V V+V S+KD G G Sbjct: 274 LRQILINLLSNAIKFTDV-GEVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIG 332 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + F Q + G GLGL I++ + GG+ + S L EG Sbjct: 333 IPKDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFC 392 Query: 472 LPNTRVLNFIPEDNHEST 489 V+ + +D E Sbjct: 393 -----VVLSVDQDASEPN 405 >gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 680 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 14/271 (5%) Query: 226 AELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +E A+ + ++ R+ AE N K FLA +SHELRTPL ++LG+S+++ + + Sbjct: 270 SEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKAT 329 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I R+ + LI +ILD+SRI G+ L+ S ++L +V + ++ A Sbjct: 330 A---RALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAALEAVRPLAD 386 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399 K++ I +D +LS V D ++Q++ NLL+NA+KFT G+V + + SG Sbjct: 387 TKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKEGKVEIRLEGISGGLSDDL 446 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D G GI +P V F Q + G+GLGL I + ++ H G L Sbjct: 447 THAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTILA 506 Query: 459 RSK-LREGVEVIAILPN---TRVLNFIPEDN 485 S + +G P R P +N Sbjct: 507 ESPGVGKGATFTVRFPLIQENREPRPAPTEN 537 >gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 537 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP+ I G++E + + + E ++ I + L +LI ++ Sbjct: 313 RRDFVANVSHELRTPVTVIKGYAEALA-GGLVEEDPERAGRFLEIICSHSERLADLIRDL 371 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS++E+G +L + I L V +L+ +A K I I V AD + Sbjct: 372 LTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRL 431 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NL+ NA+K+T GG + ++ + +S+ D G GI ++P + F + Sbjct: 432 EQVLINLMDNALKYTPPGGTITLSAD-EADGMVRVSVHDTGIGIPPKDLPRIFERFYRVD 490 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A E G GLGL I + I+ HGG + S+ +G L Sbjct: 491 AARSRDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTL 534 >gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum BKT015925] gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum BKT015925] Length = 554 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 138/265 (52%), Gaps = 9/265 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----E 275 E +++ + K L D+ R E N ++ F A++SHEL+TPLN IL +++ Sbjct: 264 EIENIKQKSNENKKLLDKER----EFNKIRTEFFANLSHELKTPLNVILSSQQLLALYLR 319 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ E ++++ + ++ LL LI+ ++D++RI++G + L+ +++ I+ + Sbjct: 320 NGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLQNHNIVTIIEDI 379 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + + K+I++ D DE + ++ILNLLSNAVKFT GGR+ V + Sbjct: 380 TLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGRIKVNI-H 438 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I+++DNG GI + +I + F Q + +G G+GL + ++++ H G Sbjct: 439 DDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDTSFTRISEGSGIGLSLVKALVEMHNGT 498 Query: 456 FLIRSKLREGVEVIAILPNTRVLNF 480 + S+ EG E I P + + Sbjct: 499 ISVESEYGEGSEFIIYFPINKQITS 523 >gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3] gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3] Length = 934 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 124/255 (48%), Gaps = 8/255 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 384 ERDTTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIE----PN 439 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L+N +++ I + SG HL +L+N+ILD S++E G+ EL ++ + Sbjct: 440 LDNPEHRKQIQILLESGNHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEP 499 Query: 342 RAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTS 397 EKNI++ + + D+ +RQVI NLLSNAVKFT G + V Sbjct: 500 ICDEKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEG 559 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +G +I D G GI + ++ F Q + G GLGL I + ++ GG Sbjct: 560 QQGIEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTIS 619 Query: 458 IRSKLREGVEVIAIL 472 I S++ +G L Sbjct: 620 ITSQVDKGTRFAIFL 634 >gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969 >gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1121 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 8/265 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + + +AE +K+ FLA+MSHE+RTP+NAI+GFS+++ + N Sbjct: 516 ISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAIIGFSDILLESEISGEN- 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+++ I +S + LL+L+N+ILD +++E + EL L + V I L L+A+ Sbjct: 575 ---KKHLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQAR 631 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E+ I+ ++ + E +RQV++N+L NAVKFT G V + V Sbjct: 632 NKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEK-GHVTLNVLKLQDGKIRF 690 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D+G GI E + + F Q ++ G GLG I++ ++ GGQ + S+ Sbjct: 691 SVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQLVTLMGGQIHVTSEAE 750 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G LP T P D S Sbjct: 751 VGSCFFFDLPLTE--TEAPSDTKTS 773 >gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 101/438 (23%), Positives = 170/438 (38%), Gaps = 28/438 (6%) Query: 60 ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM---NSDIKIGEVYVWRIWLLVGQIA 116 + W + S + + + L + + K E R+ +V A Sbjct: 244 TVLALWHGNLWTATLLSGGMILLLSLFGLLLARSLATQREQGKELEATNARLSAIVDTAA 303 Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FP 169 G+ T V + + L+ S+ L + Sbjct: 304 EGIITTRPDGVIEAANPAAHAIFRHAPGELVGRSVVELLPADRREDAARTLDEIAHGRRH 363 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + +AI +D G SF + L K+ L +D + E + Sbjct: 364 LDPTARGEAIALRPAVDGEAGGESGKTESFPLAYSMALVKTAAGPLYAAILRD--LTEEK 421 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + +++AE+ K FLA+MSHE+RTP+N ++G + ++ + + Sbjct: 422 RLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDTAL----QADQRG 477 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I S + LL +IN+ILD S+I+AGR EL L+ +V +L RA K ++ Sbjct: 478 YAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILAPRAVAKGLD 537 Query: 350 IFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------G 398 + + P L ++ D +RQ++LNL NAVKFT G V + + + G Sbjct: 538 LASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFTDS-GSVTILLNEEAPIDNDSGDGGG 596 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI E + P + T F Q + G GLGL I + + GG+ + Sbjct: 597 VRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICKRLTELMGGRIGL 656 Query: 459 RSKLREGVEVIAILPNTR 476 S G +P R Sbjct: 657 DSHPGTGSVFWVSVPLKR 674 >gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 766 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 6/244 (2%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +R A AK FL++MSHELRTPLNAI GFS +++ + +E +YI Sbjct: 384 ELINSRDEALMAEKAKDEFLSNMSHELRTPLNAINGFSSLLKRQI----KDEKQSKYIEH 439 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S L+ LIN+ILDLS++++G++ L + + + ++ + Sbjct: 440 ILESSSQLIGLINDILDLSKLQSGKFILDYHRFEPYSNIYSLVERFSPNIETASLNLVLD 499 Query: 354 IDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 +D SL V D + Q+I NLLSNA+KFT GG V ++ + I + DNG GI Sbjct: 500 LDDSLKIVANGDWLRISQIITNLLSNAIKFTPAGGEVRLSANHNDDNLRII-VSDNGLGI 558 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q + G GLGL I +++ Q + S+ G + Sbjct: 559 SKEVQEKIFMPFEQADSSTTRKFGGTGLGLSIVSNLLKQMDAQIKLESEDGNGSTFELNI 618 Query: 473 PNTR 476 P Sbjct: 619 PIKE 622 >gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] Length = 660 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 16/306 (5%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 Q I+ ++ I + + L ++ ++ + +LE ++ Sbjct: 368 VQFILLTFLVLIGGLMIALYYYYRTKILKNRLERTTKQLREDK-------KKLEASEIEL 420 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + ++RAEE N KS F+++MSHE+RTPLNAI+GFS ++ +E +EY I Sbjct: 421 RDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINSV---EPSEELQEYANIIQ 477 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + LL LI+++LD+SR+E+G+ + + L+ + I L R + N ++ ++ Sbjct: 478 TNSNLLLQLISDVLDVSRLESGKLQFNYEWCELVTHCQNMI-TLTNRNKTTNADVRLQMP 536 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAE 414 ++ D ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E Sbjct: 537 KEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTGTGIPE 596 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + V F + QG GLGL I + + GG I + G I P Sbjct: 597 DKQELVFQRFEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKDYKGGARFIFSHPI 652 Query: 475 TRVLNF 480 + Sbjct: 653 KEREST 658 >gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] Length = 839 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 10/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 N +++ + ++ E ++ A N AKS FLA+MSHE+RTPLN I Sbjct: 306 IDGNDELVEFTDTLNRVMERNYQHNQELVEAKEDAVSANKAKSAFLANMSHEIRTPLNGI 365 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E++ + P +E +GDI S LL L+N+ILDLS+IE+G LS Sbjct: 366 IGMAEILSQSKLSP----NQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 421 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L + V + + ++ +A K+IE+ ID + ++ DE +RQV+ NLLSNA+KFT Sbjct: 422 LREAVYDSVSVILSKAISKDIELDVNIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFT-SN 480 Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + + +T S+ D G GI ++ ++ F Q +I G GLGL Sbjct: 481 GTITTDIAYTPMSMGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 540 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I + ++ GG RS EG L Sbjct: 541 AICRQLVDLMGGYITARSVKGEGSTFTFCL 570 >gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855] gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855] Length = 1111 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 9/295 (3%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +S + + +++ + L+ + + ++ AE N KS FLA Sbjct: 818 GTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLA 877 Query: 255 SMSHELRTPLNAILGFSE--------VIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +MSHE+RTPL +I+GF+E ++E P ++ I SG LL ++ Sbjct: 878 NMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLD 937 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +L+LSR+EAG EL S ++L D V E + + +A + I++ + DE Sbjct: 938 TVLNLSRLEAGEMELDCSPLNLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEG 997 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 G+R + NL+SNA+K+T GG V V G + ++D G G+ +P + F Q Sbjct: 998 GLRIALQNLISNALKYTEEGGTVRVRAGRRGDD-VALEVEDTGVGMDPDHVPELFEPFRQ 1056 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 S +G GLGL + + + GG + + EG +P + Sbjct: 1057 ESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGEGSCFTVRVPAADAPDPA 1111 >gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] Length = 623 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 23/346 (6%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---- 206 + S L V + + I+S + L ++ Sbjct: 276 VHFYSTAELQEMVLSQTISLFEFSTILLIISFLFVSYLLFIVIIRPCYLLVDYVRRCGEG 335 Query: 207 -----------LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 S V+I + E + L+A + + K+A N AK+ FLA Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQSQELEYAWKKALVANQAKTHFLAK 395 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHEL+TPLNAI G+ ++++L +N I I S LL ++E+LD S IE Sbjct: 396 VSHELKTPLNAIKGYIQLLKLSI----DNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIE 451 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374 G+ +L I L + + +K+++ ID + SV + DE ++Q+I+N Sbjct: 452 DGKVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIIN 511 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 L+SNA+KFT G V + + + Y I +KD G GIAE ++ ++ SF Q + +I Sbjct: 512 LMSNALKFTEHGKIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSI 571 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I++ + GG ++ SK+ G LP +++ Sbjct: 572 SRQFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLPLSKI 617 >gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 861 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 88/404 (21%), Positives = 150/404 (37%), Gaps = 38/404 (9%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 L + + V R++ + + L + + T Sbjct: 349 VMWMLLVRFYRRTLMPVYVRSQRVFDSEELCRNVIEMAPIGLGLISRSDGRLMLASGTLT 408 Query: 145 LLIA--------LSISALSNFMLPYAVFL--SFFPVVVALSTQAIMSMHVLDISLAGMLA 194 +IA L+ ++++ A V+ L+ Q H+ + Sbjct: 409 NMIARCGDESRTLAAQVVAHYEAFLACGAPEGTMQAVLPLAGQDDAWRHLDIGARGARYQ 468 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + +E + A+ N AKS FLA Sbjct: 469 GEDVLIVAAVD-------------------VTAKRRIVRKLEEAVRAADSANAAKSSFLA 509 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTPLN ILG E++E + + + + S LL L+N+ILD S+I Sbjct: 510 AMSHEIRTPLNVILGNLELLERSALDV----SQHGRVQTLRTSAGSLLALVNDILDFSKI 565 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 EAG + ++ ++ + A+ K +++F ++D S+S + D QV Sbjct: 566 EAGAMTVESIEFGVMTVIERELSAFAPIAKAKGLQLFCEMDASISQRMRGDPMRFAQVFG 625 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 NLL+NA+KFT GRV V + ++D G GI+ + +F Q + Sbjct: 626 NLLNNAIKFTDE-GRVTARVSIVDACGAPELAVEVEDTGIGISPEHQHKLFKAFSQVDAS 684 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I G GLGL + ++ GG+ + S+ G LP Sbjct: 685 ITRRYGGTGLGLALCARLVTAMGGRISVASEPGAGSCFTVRLPL 728 >gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1085 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 18/338 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 F L + L V V ++ + + L ++ + + + Sbjct: 322 FSLFAMMALVSVIVTVYINKRVTQPIARLAEAMRNLADGNPEIPILYKDRTDEVGQISHA 381 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + +D +I+ A+ ++ AE + AK++FLA+MSHE+RTP+N ++G +++ Sbjct: 382 LSSFRDHIISRN-QAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLR 440 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + + S LL++IN+ILD SRIEAG+ + +SL I + + Sbjct: 441 SKLDM----SQMSIANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVM 496 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-----RVH 390 L A EKN+ + + P + S+ D ++Q++ N++ N +KF+ +V Sbjct: 497 DNLATEAVEKNVSLTLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFSGGQSHRGEVQVW 556 Query: 391 VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 +T IS I+DNG GI++ ++ ++ F Q + G GLGL I+++I Sbjct: 557 ITADIAKDGNAKISIEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNI 616 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + GG S+ G L +PE+N Sbjct: 617 ASLMGGTITANSEEGIGSTFTVNLHLR-----VPEENS 649 >gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1053 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 11/278 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + S +++AEE + K+ FLA++SHE+RTP+N ILGFSE+++ L Sbjct: 658 EDITEKKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILGFSELLKE---PHL 714 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EYI I++SGQ +L+LINE++D+SRIE+G L + S+ ++ + + Sbjct: 715 SGEEQTEYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPE 774 Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 A +K + + S + D + Q++ NL+ NA+KFT G V +T Sbjct: 775 AAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS---VDFRYTLKND 831 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G I + F Q ++ +G GLGL I+++ + GG+ + Sbjct: 832 CLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVE 891 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYK--CYA 495 S G + LP + + Q + C++ Sbjct: 892 SIEGRGNRFVFTLPYKPSTSVTMQQFDPDFQGRTECFS 929 >gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1326 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 10/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + ++ R+ AE+ KS FLA+MSHE+RTP+NAI+G S + + P Sbjct: 560 RDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKTNLSP- 618 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ I S HLL +IN+ILD S+IEAG+ + SL ++ ++ + Sbjct: 619 ---QQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSLEKVLETLANLIGEK 675 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGR 399 A K +E+ I P + + D + Q++ N SNAVKFT G + + V + Sbjct: 676 ASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFT-EHGEIVIGAKVQERTDD 734 Query: 400 GQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Y +++D G G+ + + SF Q + G GLGL I++ + A G+ Sbjct: 735 EVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAISKQLSALMHGEVG 794 Query: 458 IRSKLREGVEVIAI 471 + S+ +G Sbjct: 795 VESEPGKGSTFWFT 808 >gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 595 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 ++ F++++SHEL+TPL +I GF + ++ + + E +++ I + L L Sbjct: 370 LEQMRTEFVSNVSHELKTPLTSIRGFIDTLKDGAV--NDPEVAGKFLDIIDIEAERLSRL 427 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 INEIL LS IE+ + + + + L ++ E +LQ A+E+ + + I S+ S+ A+ Sbjct: 428 INEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESV-SIQAN 486 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + ++Q+++NL+ NA+K+ G V V +G IS++D G GI + + + F Sbjct: 487 KDKIKQLLINLIDNAIKYNIENGSVTVKAEQ-AGGKVLISVRDTGIGIEKEYLDRIFERF 545 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + S G GLGL I + I+ + G+ + S +G E +P Sbjct: 546 YRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594 >gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1198 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 112/379 (29%), Positives = 172/379 (45%), Gaps = 18/379 (4%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 L+ I C ++ L P E ++ ++ + I L+IS N + Sbjct: 382 HNIALMPLILDNECLGVIELGLPNEPREEQISFFQESCKDIGLAISDAYNRNKIQTLLEE 441 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILS---CQAEK 221 L Q ++ A L + L ++N ++ EK Sbjct: 442 SQAQAEELQMQHSELENLNMELEAQTQKLQASEEELKVQQEELLQTNQELEERSKLLEEK 501 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELET 278 + LIAE + E +K+AEE L+ KS FLA+MSHELRTPLN+IL S ++ T Sbjct: 502 NHLIAERNL------EIQKKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMAENT 555 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L NE E I SG LL LI+EILDLS+IEAG+ +L I + IV + Sbjct: 556 EHNL-NEEQIESANVIQSSGASLLELIDEILDLSKIEAGKMKLEFQKIEISGIVSALKAL 614 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +EKN++ KI + + D+ + QV+ NL+SNA+KFT+ G + + + Sbjct: 615 FLPIIKEKNLDFDIKIGADVGQIIETDKMRVEQVMKNLMSNAIKFTSR-GSIGLQISR-E 672 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++KD G GI + + +F Q + + G GLGL I++ I GG+ Sbjct: 673 NNNILFAVKDTGIGIPAEQQKIIFEAFQQADGSTRRKFGGTGLGLSISREIAKLLGGEIR 732 Query: 458 IRSKLREGVEVIAILPNTR 476 + SK EG ++P +R Sbjct: 733 LLSKESEGSIFTLVVPISR 751 >gi|134109563|ref|XP_776896.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259576|gb|EAL22249.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1390 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 804 SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + + LL +I++ILD+S+IEAGR + + SL V Sbjct: 864 ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A + +++ +DP++ + D +RQVI NL+ NAVKFT G+V ++ Sbjct: 920 LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978 Query: 395 WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 979 VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + G + S+ +G Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061 >gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] Length = 612 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +S+ D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A] gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1045 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI I + LL LI++ILDLS+IEAG E S + L DI+ E + + R + Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTE 777 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 I++ + + ++ + QV+ NLL+NA KFT+ G + + Y Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ + Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891 Query: 465 GVEVIAILPNTR-VLNFIPEDNHE 487 G +P E+ H+ Sbjct: 892 GSTFWFTIPYQPAAAENKKEEEHQ 915 >gi|291613756|ref|YP_003523913.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583868|gb|ADE11526.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 837 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 161/404 (39%), Gaps = 19/404 (4%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 L L ++M + +I + + + L +P + Sbjct: 23 LLRIAFTTLILTYLFVEIMLGNPEIISRRQ--LIFASSYLVFSILLAAYVLFKPNVS--K 78 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 L A + L + F + V+V + + + + T Sbjct: 79 RRVFLTMICDLGATTYVILISQETGPIFFGIYLWVIVGNGIRFGAWSLITSYVTSILGFT 138 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRFLA 254 + F + ++ ++ I +L +E R+ + AKS FL+ Sbjct: 139 LVIFLNDYWISNPRLSIGLMLTLILIPPYILKLRNQVNQALEEARR----ASKAKSDFLS 194 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTPLN ++G +++ +G ++ K+ + + +S LL LI+ ILDLS+I Sbjct: 195 NMSHEMRTPLNGVIGAGDLL----LGTRLDDEQKDLVATLKKSAHLLLKLIDNILDLSKI 250 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 E+G+ ++ L +V + M + ++K I + + P + D ++QV++ Sbjct: 251 ESGKLVSEKTDFDLHKLVNSTLEMFLPQVEKKGISLSVRFTPETCFMLQGDPLHLQQVLI 310 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT+ G V + + + D G GI+ + SF Q Sbjct: 311 NLVGNAIKFTSK-GSVELRIATLQQGDLQTLLRFEVIDTGIGISPQAQGRIFESFTQADQ 369 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I G GLG I++ ++ GG+ ++S+ G +P Sbjct: 370 NITRIYGGTGLGTTISKQLVELMGGKMGVQSEQGIGSIFWFEIP 413 >gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 1045 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI I + LL LI++ILDLS+IEAG E S + L DI+ E + + R + Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTE 777 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 I++ + + ++ + QV+ NLL+NA KFT+ G + + Y Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ + Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891 Query: 465 GVEVIAILPNTR-VLNFIPEDNHE 487 G +P E+ H+ Sbjct: 892 GSTFWFTIPYQPAAAENKKEEEHQ 915 >gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] Length = 565 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 15/313 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 ++ M + D L + + F T +L + + + + L LE A Sbjct: 255 SLLLPMALYDQILGFIYLEEVGFLTDNDQYLLQIMITQCAAALKNLKLYTHLEEANRQ-- 312 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 N K++FL +H+LR PL ILG+ ++++ E + + +E +Y+ IH Sbjct: 313 ---------NERKNQFLGMAAHDLRNPLGVILGYGQMLQEEAL-EILDEEQLDYLNRIHN 362 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + Q LNL+N +LD+++IE+G L L+ + E I + + A+ K I++ D Sbjct: 363 ASQFTLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYDE 422 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 +L + D ++QVI NL+SNA+K++ +V + IS+ D G GI + E Sbjct: 423 NLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQND-VLISVTDEGQGIPKSE 481 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F + S+ + E GLGL I + I+ H G+ + S++ G +LP Sbjct: 482 LDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLPP-- 539 Query: 477 VLNFIPEDNHEST 489 + P++ E T Sbjct: 540 IPEPQPQNQEEKT 552 >gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1231 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 101/288 (35%), Positives = 159/288 (55%), Gaps = 27/288 (9%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L ++ +L+A+ + + ++ A+ N AKS FLA+MSHELRTPLNAILGFS+ Sbjct: 711 AQLGVAIQQAELLAQTQKQAAELKIAKESADAANSAKSEFLANMSHELRTPLNAILGFSQ 770 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + + Y +Y+ I+RSG+HLL LIN+IL++S+IEAGR L E+ L +++ Sbjct: 771 LMNRDR---SLSTEYIQYLNIINRSGEHLLELINDILEMSKIEAGRMVLYENEFDLYNLL 827 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG---R 388 MLQL+AQ K +++ + D ++ V D+ +RQ+++NL+ NA+KFT G R Sbjct: 828 DNLEDMLQLKAQSKALKLTFQRDKTVPKFVKTDQSKLRQILINLIGNALKFTEKGNVILR 887 Query: 389 VHVTVGWTSGRGQ-------------------YISIKDNGPGIAEGEIPTVLTSFGQGSI 429 V V S Q ++D GPGIA + + +FGQ + Sbjct: 888 VKVAGRERSNNEQKENTNIPSSFFLLPSSFFLQFEVEDTGPGIAPEDFDKLFEAFGQTAT 947 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +KS QG GLGLPI+Q + GG+ + S+L +G + + + V Sbjct: 948 GLKSG-QGTGLGLPISQKFVQLMGGEITVSSQLGQGAKFTFDIQASSV 994 >gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 586 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENL 247 A + ++ H+ + V+ S + +I +LE+ +R +A E Sbjct: 123 AATAIYRCLYGFLGNHMRELRVQKESLALKNSQVIKVQRDLELTNDKLAYSRDKALEGVR 182 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K FLA+MSHE+RTP+N +LG +++ M + ++ +G S + L+ +IN+ Sbjct: 183 MKDIFLANMSHEIRTPMNGVLGMIDLLYDTEM----DAEQEQLVGTARSSAETLMRIIND 238 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILD S+IEAG+ + +LI+IV + A EK I++ D + V D Sbjct: 239 ILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFDDVPAWVVGDPHR 298 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSF 424 +QV+ NL+SNAVKFT G V + G +KD G GI ++ + F Sbjct: 299 YQQVLNNLISNAVKFTDS-GEVEIRACQVETGSGLGILTEVKDTGIGIPASKVTKLFEPF 357 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 Q + G GLGL I +++ GG+ S+L +G +LP Sbjct: 358 TQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLPFAP 409 >gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] Length = 911 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++ + LD + G L Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNAVDRIRRGQLDSRVEG---HML 220 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ KRA+E Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLANKRAQEAA 280 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ I+ + V D Sbjct: 337 DVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDVPEQVVGDA 396 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + VT + + + I+D G GI+E + + Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTGIGISESQQAQLFQ 456 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFKFHL 506 >gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1211 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 129/268 (48%), Gaps = 7/268 (2%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E E+E A+ +E ++ + KS FLA+MSHELRTPLN++L + ++ ++ Sbjct: 499 EVARKNQEVERARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSL 558 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++ EY I+ +G LL LIN+ILDL++IE+G L I+ D+ Sbjct: 559 NNLTDKQV-EYSRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTF 617 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVT--V 393 + A K + ++D L +++ D K ++QV+ NLL+NA KFT GG + ++ Sbjct: 618 RQVAHNKELSFTIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDA 677 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G GI + + +F Q G GLGL I++ + G Sbjct: 678 AQIDNPMVAFAVSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLG 737 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481 G+ + SK +G LP + N Sbjct: 738 GRIELVSKPGQGSTFTLYLPRRQEKNSQ 765 >gi|323492710|ref|ZP_08097854.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323313085|gb|EGA66205.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 770 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 153/398 (38%), Gaps = 23/398 (5%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS------ATLLIALSISALSNFMLP 160 + + + + L + +++ + A+ Sbjct: 100 QRAMTSDTGLNSVDDGIFDLRTEIEVNGKAYGYVDIGFETQPIMMMLNDAQKAIVGIATM 159 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 V ++ F + ++ ++ G + Sbjct: 160 EVVLVALFSFALGTYLTRGLTRLTSAVTTIGHSGPGFQLNEQAKDEIGDVARA------- 212 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 DD+ A+LE L + R+ AE +KSRFLASMSHE+RTP+N +LG ++E + Sbjct: 213 FDDMSAKLEQDYKLLNAAREDAELSCDSKSRFLASMSHEIRTPMNGVLGILNILEETELS 272 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++ + SG LL++IN+ILD +R+E+ L + V + Sbjct: 273 N----EQRKLVSTATESGHFLLSVINDILDFTRMESNTLILEDQPFDFRHCVESVVDSFT 328 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG 398 A+ +N+ + I+ SL V D ++Q++LNL+ NA+KFT G + V + Sbjct: 329 PTAKAQNLVLHCYIEGSLPGKVRGDINRVKQILLNLIGNAIKFTHQGSVTIKVGSEPLAD 388 Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I+ I+D G GI + I + F +++G GLGL I + + G+ Sbjct: 389 KKVRITCQIQDTGIGIKQSAIEYLFDEFTMVDQTYSRSKEGSGLGLAICRRLCNLMDGEV 448 Query: 457 LIRSKLREGVEVIA--ILPNTRVLNFIPEDNHESTQYK 492 + S+ G LP L PE + K Sbjct: 449 RVESQPDIGSTFTFDISLPVADELISSPESTDSKPELK 486 >gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 460 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 137/310 (44%), Gaps = 15/310 (4%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ Q I +A + ++ IT ++ K VK+ +++ + Sbjct: 154 ITVQFGEMRIFFSIIMAIAILLSILLVGVITRYIVKPIVKLTEATQNVAKGNYNVQLNVA 213 Query: 234 LSDETRKRAE----------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 DE + A+ + + F++++SHE+++PL +I GFS+ ++ + + + Sbjct: 214 RRDELGQLADHFSQMAKGIAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---S 270 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E + Y+ I + + L ++L L+ ++ L +S + + +++ + Sbjct: 271 EEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQVL--FHTEW 328 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ E+ + + + D++ + QV NL++N++KFTA G + + + I Sbjct: 329 SWRSKELTMDMSLPSTYIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSI 388 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G GI +P + F + A +E GLGL I Q I+ HGG+ + S+ Sbjct: 389 EISDTGIGIPPEHLPHIFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPG 448 Query: 464 EGVEVIAILP 473 EG LP Sbjct: 449 EGTTFTVTLP 458 >gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] Length = 618 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 118/235 (50%), Gaps = 7/235 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N + F++++SHELRTPL ++ +SE + + + + ++ I ++ Sbjct: 372 EKTNQERRDFVSNVSHELRTPLTSVKSYSEALLDGAL--QDTSLAQPFLEVIQLESNRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ----EKNIEIFQKIDPSL 358 +++ +LDLS+I+ G+ L + + +V + ++ + +KN +I + P Sbjct: 430 RMVSNLLDLSKIDGGQIILQKDLVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRD 489 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D+ M QVI NL++NA+K++ GG++ + + + S+ D G GI++ + Sbjct: 490 IYVDIDQDRMTQVIDNLINNAIKYSPDGGKITIGLE-DNRDSVIFSVSDQGLGISQVDAE 548 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A + G GLGL I++ ++ HGG+ + S EG LP Sbjct: 549 HLFERFYRVDKARSREQGGSGLGLAISKEVVELHGGRIWVESIENEGSTFSFELP 603 >gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua] gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua] gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 927 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 963 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 146/285 (51%), Gaps = 7/285 (2%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 ++ L I + +E R A + + AKSRFLA MSHE Sbjct: 544 LWATVKSAVRAEDGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRFLAHMSHE 603 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFS+++++ + PL + + I SG+HLL LIN+ILDL+RIE+G+ Sbjct: 604 LRTPLNAIIGFSQMLDMGALDPLT-AQQQTAVSHIRDSGRHLLELINDILDLARIESGQS 662 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL+ AI L ++ E + + + A + I I + + L V+AD +RQV+LNL SNA Sbjct: 663 ELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGL-HVYADRTRLRQVLLNLTSNA 721 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +K+ +GGRV + V +G I + D G GI E + F + A K+A +G G Sbjct: 722 IKYNRLGGRVTIDVEP-AGEWVRIRVSDTGAGIDESLREEIFQPFQRL-GAEKTAIEGTG 779 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 +GL I + ++ GG S +G L R ++ P Sbjct: 780 IGLIICKHLIEVMGGSIDFDSVPGQGSRFWFEL---RPVHPEPTA 821 >gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora sp. 8437] Length = 585 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 116/237 (48%), Gaps = 7/237 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +R E ++ F+A++SHEL+TP+ ++ GF+E + + + KE++ I Sbjct: 356 AIRRLE---KMRTEFVANVSHELKTPVTSLRGFAETLLDGA--AEDPDMRKEFLEIIQAE 410 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI ++LDLS+IE+ L I + +++R ++ + +++ + K + Sbjct: 411 SLRLERLIADLLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEE 470 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D Q++LNLLSNA+ +T GG V ++ G +I + D G GI ++ Sbjct: 471 FP-VQVDPDRFSQILLNLLSNAMTYTPAGGEVILSAGRGETDW-WIRVADTGIGIPGEDL 528 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 P + F + A G GLGL I + ++ H G+ + S+ +G E+ P Sbjct: 529 PRIFERFYRVDKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFPR 585 >gi|311032689|ref|ZP_07710779.1| two component system histidine kinase [Bacillus sp. m3-13] Length = 933 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L N ++ + + ++L+ AK+ +E K+ + + KS FLA+MSHELRTP Sbjct: 469 SEELRMINEQLEERSRDAEQKSSDLQKAKTELEEKAKQLQLSSKYKSEFLANMSHELRTP 528 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ + L +E +E+ I+ SGQ LLNLIN+ILDLS++E + E+ Sbjct: 529 LNSILLLSEMLAEDPEDQLTDE-QREFSRVINSSGQDLLNLINDILDLSKVEVKKLEVMF 587 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 +++ + + + A+ K + L V+ DE+ ++Q++ NLLSNA KF Sbjct: 588 GEVNVEEFINRLELQFTHIAKHKKLNYEIVRGNQLPDVFFTDEQRLQQIVKNLLSNAFKF 647 Query: 383 TAIGG-RVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 T G V + V + IS++D G GI++ + + +F QG A Sbjct: 648 TEQGKVSVKIEKAPKRDLLRANVNVKADTWLKISVEDTGIGISKDKQSLIFEAFHQGDGA 707 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ GG + S+ EG ++P Sbjct: 708 TMRKYGGTGLGLSISKEFSNLLGGSVFVESEEGEGSVFTLLIP 750 >gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 514 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 141/260 (54%), Gaps = 1/260 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + E + A+E + +K+RFLA++SHELRTPLNAI+G SE+I E G + Sbjct: 241 RDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGGI 300 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y+EY DI+ SG HLL++IN ILD SRIE + L + + ++ ++ + +Q Sbjct: 301 GNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQRL 360 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 E + + L V AD + +RQ++LNLLSNA+K T GGR+ +T + Sbjct: 361 LDEGGLTCELQAKGPLVLV-ADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGELV 419 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++++D+G GI + V F S + G GLGL I + ++ HGG I S++ Sbjct: 420 LTVRDSGEGIPRERLALVTEPFNLDEDISVSRQGGTGLGLAITKGLIKRHGGAMSINSRV 479 Query: 463 REGVEVIAILPNTRVLNFIP 482 EG V + P RV P Sbjct: 480 GEGTTVRLVFPAERVPFGGP 499 >gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] Length = 593 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 354 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 411 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 412 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 471 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +S+ D G GI ++ + F Sbjct: 472 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 530 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 531 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 586 >gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 715 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 11/267 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+ ++ E L R AE N K FLA +SHELRTPLNAILG+S++++ + Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKL 366 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P + + I R+ + LI ++LD+SRI G+ ++ + ++L+ ++ + + Sbjct: 367 DPT---RTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETM 423 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +L A+ K I++ P++ V D ++QV+ NLLSNAVKFT GG++ VT+ Sbjct: 424 RLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKME-G 482 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GI +P V F Q + G+GLGL I + I+ HGG + Sbjct: 483 YAQIVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQ 542 Query: 460 S-KLREGVEVIAILPNTRVLNFIPEDN 485 S +G LP +PE++ Sbjct: 543 SLGEEQGASFTVRLPI------LPEED 563 >gi|330906611|ref|XP_003295535.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1] gi|311333095|gb|EFQ96363.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1] Length = 1329 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 709 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 768 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 769 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 824 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 825 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 883 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 884 MAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 943 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 944 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 987 >gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1792 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + +LV G L E L + +L + ++ Sbjct: 1160 FRPGEALVGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGQVLGVIELA 1219 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKS 210 + + F FL+ ++A S I ++ L+ K+ Sbjct: 1220 SFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQELTEQLRERSEELEQRQKA 1279 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1280 LQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1339 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L E+ IH +G LL LIN+ILDLS+++AG+ Sbjct: 1340 LRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKM 1398 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + + EK +++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1399 DVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSN 1458 Query: 379 AVKFTAIGG-RVHVTVGWTS-------------------GRGQYISIKDNGPGIAEGEIP 418 AVKFT G + + S+ D G GIA ++ Sbjct: 1459 AVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQ 1518 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1519 VIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1574 >gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] Length = 617 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 15/334 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 + +L AV + V+L + + + + ++ L S Sbjct: 190 FHLILQIAVLGGIIAICVSLILVSFLRQLQAYLKQLHHSMEIIGRGD-LSEKLEVSGNDE 248 Query: 215 LSCQAEKDDLIAEL--------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 LS + +L + E + ++ AE+ + AK+ FLA+MSHE RTPLNA Sbjct: 249 LSQISGAINLTTDNLKRLHTVLEQRVNELSLAKEEAEKASRAKNVFLANMSHEFRTPLNA 308 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GFS I + ++++ I SG HLL LIN +L +S+IEAG+ E++E Sbjct: 309 IIGFSSHIAQ---SAALDPEERKHLSIISNSGNHLLTLINSVLAMSKIEAGKTEVNERTT 365 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 +L D++ + M L+A EK + P L + V D+ + Q+++NL++NA+KFTA Sbjct: 366 NLQDLLADIHAMFSLKAAEKALSFDLICHPDLPAIVQVDDVKLWQILINLINNAIKFTAR 425 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V V V I+D GPG+A+ E + F Q + +G GLGL I Sbjct: 426 GG-VKVIVEKNDTPEILFKIRDTGPGMAKDEQAMIFDPFVQL-ATDQGINEGTGLGLAIC 483 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 +S + GG+ + S +G +P + Sbjct: 484 RSYIHLMGGEVKVDSVRGKGSTFFFSIPLKTLAE 517 >gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 904 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 30/297 (10%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H +K+L + + + E + AE N AKS FLA+MSHELRTPL Sbjct: 361 RHWQDLELKLLKKVGAQLGVALQQANLLKDLREAKNAAETANQAKSVFLANMSHELRTPL 420 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFS+++ + L K+ + I+ SG HLLNLIN++L++S+IEAG+ +L++ Sbjct: 421 NAILGFSQLLSRDQNLTL---EQKQTLRTINSSGAHLLNLINDVLEMSKIEAGKVDLNQG 477 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L ++ M L+A+ + + + ++ P L + +D +RQV++N+L NA+KFT Sbjct: 478 QFDLRALLESLFEMFSLKAEARQLRLDFELPPDLPQYIVSDASRLRQVLINVLGNAIKFT 537 Query: 384 AIGGR-------------------------VHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +G + + + I++ D G GIA+ E+P Sbjct: 538 EVGSVTLAISTLPLQSVSEQLSDISSENEAITLEPTLENDTLLQITVTDTGVGIADDELP 597 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q +S +G GLGL I++ + G + SK +G +V +P Sbjct: 598 NLFNLFTQACAGRQS-FEGTGLGLAISRQFVQLMQGDIHLSSKEGQGTKVQIQIPVK 653 >gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes] gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969 >gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1436 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 138/262 (52%), Gaps = 9/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + A + + ++ AE + AKS F+A+MSHE+RTP+N +LG E++ + + Sbjct: 787 VRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNTRLDGV-- 844 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ + S + L++++N+ILD S++EAG+ E + + L +++ M+ + A Sbjct: 845 --QRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAMMSMHAA 902 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 K +E+ +DP++ + + D ++QV++NL NA+KFTA G V V+VG G+ Sbjct: 903 RKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAE-GEVAVSVGREKRDGRDW 961 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G G+ + T+ F Q + G GLGL I++ ++ GG+ + S Sbjct: 962 LLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGEIGVES 1021 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + EG LP P Sbjct: 1022 RPGEGSRFWFALPLEPADKEPP 1043 >gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1044 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 13/276 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + A+ ++ ++ AE N AKS FLA+MSHE+RTPLN I+G ++++ ++ N Sbjct: 649 VTERKNAEYVALRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTTSL----N 704 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY +S L +L+++ILDLSR+EAG+ + L + + I + A Sbjct: 705 HEQLEYSSMAVQSTSRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIAL 764 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 + +E+ D +L V D ++QV+ NL+ NA KFT G V V R Sbjct: 765 QSGVELRHHFDDTLPQHVIGDPLRLQQVLTNLIGNAFKFTER-GFVSVEAYPLPARNENQ 823 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D+G GI + + + F Q S QG GLGL I + ++ GG I Sbjct: 824 LRIFFEVSDSGCGIPDEALGLLFEPFSQVSQGYTRQYQGAGLGLSICKRLVGLMGGNMAI 883 Query: 459 RSKLREGVE--VIAILPNTRVLNFIPEDNHESTQYK 492 S++ G L L T + Sbjct: 884 SSEVGVGTSIYFCVTLDKALKLPAQDSSAQTKTALR 919 >gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 761 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+ + LL LIN+ILDLSR+E+G+ L ++ E QL Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E +E+ ++ V D ++QV+ N ++NA+KFT G ++ VG+ T G Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I ++D G GI E + V F + QG GLGL I Q I GG+ ++S+ Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744 Query: 462 LREGVEVIAILPNTRV 477 +G + LP R+ Sbjct: 745 YGKGSRFMLTLPKERI 760 >gi|119468942|ref|ZP_01611967.1| sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] gi|119447594|gb|EAW28861.1| sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] Length = 577 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 134/254 (52%), Gaps = 10/254 (3%) Query: 227 ELEVAKS--LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E EVA + ++ AE N AKS FLA+MSHE+RTP+NAI+G + + + + Sbjct: 46 EQEVANRTHDLELAKQDAEAANEAKSDFLANMSHEIRTPMNAIIGMAYLALDTEL----S 101 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++Y+ IH S + LL +IN+ILD S++EAG+ EL + + + + ++ A Sbjct: 102 EKQRDYVEKIHYSAESLLGIINDILDFSKVEAGKIELEQKEFNFNTFLENLVNIISTLAS 161 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRG-- 400 ++ IE+ IDP L D + QV+LNLL+NA+KF+ G + V + Sbjct: 162 QRKIEVVFDIDPLLPDFFIGDALRLNQVLLNLLNNALKFSTRGKVILAVKLVQKVDSYCS 221 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 SI DNG G+ + ++ ++ F Q ++ G GLGL I+++++ G + S Sbjct: 222 VAFSISDNGIGMTQAQVDSLFKPFTQADVSTTRKFGGTGLGLVISKTLVELMQGDITVNS 281 Query: 461 KLREGVEVIAILPN 474 KL +G +P Sbjct: 282 KLNKGSCFSFTIPL 295 >gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1371 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 14/246 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS+FLA+MSHE+RTP+ +LG +E++ G +E +EY+ +I S LL +IN Sbjct: 796 RLKSQFLANMSHEIRTPITGVLGMAELLA----GMHLDEEQQEYVENIQSSATSLLTVIN 851 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363 +ILD S++E+GR ++ E SL IV+E MLQ + KN++ +I S+ V Sbjct: 852 DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSEIGDSIENDLVVIG 911 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D +RQ++ NLL+N++KFT G V +V +++D+G GI + Sbjct: 912 DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVVAEKETAESIEVRFTVEDSGIGIQDEVRKK 970 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F QG + G GLGL I ++++ G+ + S + G +P + Sbjct: 971 LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNK--P 1028 Query: 480 FIPEDN 485 P + Sbjct: 1029 SGPAEA 1034 >gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 761 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 13/256 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 515 IQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEVLEPEE 574 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ I+ + LL LIN+ILDLSR+E+G+ L ++ E QL Sbjct: 575 REQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMP 632 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQ 401 E +E+ ++ V D ++QV+ N ++NA+KFT G ++ VG+ T G Sbjct: 633 E-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCTKGDCL 688 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +I ++D G GI E + V F + QG GLGL I Q I GG+ ++S+ Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDE----FAQGTGLGLAICQVIAQRFGGEIQLKSE 744 Query: 462 LREGVEVIAILPNTRV 477 +G + LP R+ Sbjct: 745 YGKGSRFMLTLPKERI 760 >gi|225027309|ref|ZP_03716501.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353] gi|224955371|gb|EEG36580.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353] Length = 955 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 11/317 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++L +SL + + + ++ K + L ELE + Sbjct: 506 FIQDNLLAVSLIVGIFIFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A+ N AK+ FL +MSH++RTP+N I+G ++E + E K+ + I+ Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL+L+N++LD++++E+ S+ +I+L + +E L +A+EK + + + D Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411 S VW++ +++V++NL +N++K+ + G ++++ + + I+DNG G Sbjct: 683 YSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIG 742 Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E I + T F Q + +S G GLG+PI + ++ GG + SKL EG Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802 Query: 471 ILPNTRVLNFIPEDNHE 487 ILP N E+ + Sbjct: 803 ILPFKIDTNARLEEKED 819 >gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 830 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 170/438 (38%), Gaps = 24/438 (5%) Query: 43 ESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGE 102 + ++ A + + A L + + Sbjct: 114 DGSAGAFVLVRAGAAFTAEERGYLESLLGVLGLLAQLVNTTARAERLAARFGAIVQTLPH 173 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 V+ G LL + T + + AL A Sbjct: 174 ALVFIDDDGSEAFVNGAAAALLGISPAVTEPARVSAAMHAMRARASEQEDALRTIATAVA 233 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V ++L+ VL +S ++ + ++ + Sbjct: 234 HDREIRDVRLSLAATESAPRTVLSVSSTPTRERGTPGRLWLYIDITARHLAL-------- 285 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +LE + + R A+ N AKSRFLA+MSHELRTP+N +LG + ++ + P Sbjct: 286 ---EQLEANNAALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAPE 342 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E Y+ I SG LL +IN+ILD S++EAG +EL SL V E ++ + Sbjct: 343 PSE----YVETIRSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVS 398 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------- 394 A +K +E+ +I + V D +RQVI+NLLSNA+KFT + G V + + Sbjct: 399 AAKKRLELALRIAEDVPWTVRGDITRLRQVIVNLLSNAIKFTDV-GEVVIAIACAPKIDC 457 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +G ++S++D G GI ++ SF Q +I G GLGL I ++A G Sbjct: 458 QRAGVRLHLSVRDTGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDG 517 Query: 455 QFLIRSKLREGVEVIAIL 472 + + S+ G + Sbjct: 518 RIWVESEQGAGATFHFTI 535 >gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 818 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 8/239 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R++ E+ N AKS FLA+MSHE+RTPLN I+G +E++ + + K+Y+ I+ S Sbjct: 320 AREKEEQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKDYLATINSS 375 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL LIN+ILDLS+IE+G E+ ++ +++ + + ++ +AQ+++IE+ ID + Sbjct: 376 SQTLLMLINDILDLSKIESGHLEICPHTCNIKEVIYDTVALIAPKAQQRSIEMRITIDQN 435 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIA 413 + V ADE+ +RQV++NL SNAVKFT G ++ + V T S+KD G GI Sbjct: 436 IPCYVRADEQKLRQVLMNLASNAVKFTHSGSVSFKLQLEVETTDTICILFSVKDTGIGID 495 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E + V F Q G GLGL I+ ++ GG+ I S G E L Sbjct: 496 ENKHMQVFEEFQQEERNTSVEYGGTGLGLSISTKLVRMMGGEIAINSSKGLGSEFYFYL 554 >gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1364 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + +E + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQEMVTKIDRSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ + S G E ++ + + P+ E Sbjct: 845 VELMGGELEVESVPGRGSEFYFVITLEK--SAPPQAQRE 881 >gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4] gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4] Length = 466 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 13/316 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ + I + I+ + LS + H+ + Sbjct: 157 LIYDMGLILAPLAFIMILLTIWIGRKIIIA----ITKPLSQMERVANHMATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + F A++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++ IHR + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---QQQSKFTQLIHREAGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLET 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I +DP + V DE M+QV+ NLL NA+++T G + + + Sbjct: 326 YELKCMEKELYISTDLDPDII-VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLK-KKD 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 R + IKD G GI + + F + G GLGL I + I+ H G++ + Sbjct: 384 RQCELKIKDTGIGIDAEHLEQLGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRV 443 Query: 459 RSKLREGVEVIAILPN 474 S+ +G VI LP Sbjct: 444 ESEKGKGTTVIIKLPA 459 >gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] Length = 616 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +F++++SHELRTPL ++ + E + N ++ I + ++ +I Sbjct: 371 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 428 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358 N++L LSR++ G + ++L D V + + +K I ++ Sbjct: 429 NDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPHQA 488 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI ++ Sbjct: 489 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 547 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL I++ I+ H G+ S G LP + Sbjct: 548 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPYEAIS 607 Query: 479 NF 480 Sbjct: 608 EE 609 >gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] Length = 590 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 6/239 (2%) Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R +EE L KSR F+A++SHELRTP++ + G+SE I + +E KE I+ Sbjct: 355 RDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKEIAQVIYD 412 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 + L+NE+LDL+R+EAG +L ++++++ + Q A+EK+I++ Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKV 472 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 D M QV+ NL+ NA++ T G V + + + ++S++D G GI + Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDTGAGIPKE 531 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++P V F + A + G GLGL IA++I+ H G + S+L EG LP Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590 >gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 680 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 155/351 (44%), Gaps = 29/351 (8%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L V L ++ L ++ + + + +L + ++L L+ Sbjct: 329 LNLIVGLVAASIMATLYLSRDLARPLEKLRDYALTVKSLESPQMVPHNLKIREFDQLA-- 386 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 D ++ L + K+A+ N K FL ++SHELRTPLN I+GF + ++ Sbjct: 387 EAIDSMVERLRSWAEELEVASKQAQVANQLKDEFLRNISHELRTPLNGIIGFLQFVQDGD 446 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + E E++ + + HLLN+IN+ILD+++IE+G + I+L ++ E + + Sbjct: 447 CDDRDEEM--EFVQRAYDAAIHLLNIINDILDIAKIESGTLSMMLETINLTQVIEEAVDL 504 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397 + ++K +E+ V+AD ++QV LN+LSNA+KFT G++ +++ S Sbjct: 505 QVVEVEQKGLELILPDLKEPIMVYADPDKLKQVFLNVLSNAIKFTDS-GKITISIRLESV 563 Query: 398 ----------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 ++I+D G GI + + + F + Sbjct: 564 LLNNGASYNGNAVYNMAQVTGTKDWVVVTIEDTGIGIDQEQQDKLFQPFVMADGSTTRKY 623 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I++++M G + S + +G + LP ++ +++ Sbjct: 624 GGNGLGLAISRNLMQLMAGTISLYSAGINQGTTLTIALPAKQLPGGSIKED 674 >gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 888 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 15/261 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 487 ITELEMIKRELQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITES----DDA 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y + + + LL LINEILDLS+IE+G E S SL ++ +E R Sbjct: 543 EERKTYYQIVEANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRTP 602 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 E +++ + + D+ + QVI NL+ NAVKFT G + G+ Sbjct: 603 E-GVQLVYEPSDESLRIETDKNRVFQVISNLIGNAVKFTKEGS---IKYGYELVDGQIVF 658 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GGQ + S + Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGQISVSSIVG 714 Query: 464 EGVEVIAILPNTRVLNFIPED 484 G LP + P++ Sbjct: 715 VGTTFTFTLPYS--TQETPKE 733 >gi|58265008|ref|XP_569660.1| protein-histidine kinase [Cryptococcus neoformans var. neoformans JEC21] gi|57225892|gb|AAW42353.1| protein-histidine kinase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1390 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 804 SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + + LL +I++ILD+S+IEAGR + + SL V Sbjct: 864 ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A + +++ +DP++ + D +RQVI NL+ NAVKFT G+V ++ Sbjct: 920 LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978 Query: 395 WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 979 VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + G + S+ +G Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061 >gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1057 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 15/265 (5%) Query: 221 KDDLIAELEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 D+ + VA+ L+ + + N K FLA +SHEL+TPL A+LG S +++ + + Sbjct: 323 AQDITEQYRVAQELT--AKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKAL 380 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L++ +Y IH+SG+HL+ ++N+ILDL+RIE G+ EL+ +++ + + + Sbjct: 381 GELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCDRALEAV 439 Query: 340 QLRAQEKNIE----------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 Q+ +I+ +I+P L ++ ADE +RQ+++NL+SNA KFT GG + Sbjct: 440 LHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYM 499 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + V ++ D G GI E + + F Q + +G GLGL + Q + Sbjct: 500 GLRVNRWED-WVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLA 558 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 HGG S R+G E +LP Sbjct: 559 RLHGGDISFISHQRKGTEFTLLLPP 583 >gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1271 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + + +AE+ AKS F+A++SHE+RTPLNA++GFSE++ + YI I Sbjct: 790 LKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSARA----QDSKAASYINSI 845 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SG+ LL LIN+ILD+S++EA E + S+ ++ E + + R + +I++ I Sbjct: 846 KTSGKALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFI 905 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410 + D +RQV+LNL+ NAVKFT G + V + YIS+KD G Sbjct: 906 AADTPKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCEAVNDERVDLYISVKDTGI 965 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + E+ + +F Q + + G GLGL I+ ++ GG+ + SK+ G Sbjct: 966 GIPKEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTV 1025 Query: 471 ILPN 474 ILP Sbjct: 1026 ILPA 1029 >gi|163801626|ref|ZP_02195524.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4] gi|159174543|gb|EDP59345.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4] Length = 986 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 22/360 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +S + A LS +A+ + + + A + A + + Sbjct: 357 VVYLSVVKRLAEYSAALLSVAQGNLAVELEVRGKDELAHMGQAIITARNTAQALKVVAEG 416 Query: 208 FKSNVKILSCQAEKDDLI-----AELEVAKSLSDE-------TRKRAEEENLAKSRFLAS 255 + L E+ + + ++L+ A +E R++AE+ + AKS FLA+ Sbjct: 417 EAQAKRELEEHKEQLEELVGQRTSQLKQANRRLNEEALNHAKARQQAEQASRAKSAFLAT 476 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N +LG + ++ + P+ K Y I+RSG+ LL ++N++LD S+IE Sbjct: 477 MSHEIRTPMNGVLGTARLLIDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIE 532 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374 AG E+ L +V + ++ +AQEK + I+ + W D + QV+ N Sbjct: 533 AGHLEIRCLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSN 592 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 L+ NA+KFT G ++V++ + D G GIA+ + T+ +F Q + Sbjct: 593 LVGNAIKFTEEGEVDIYVSLNPEDESQVLFEVTDTGIGIAKKDQKTLFDAFTQAESGMH- 651 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G GLGL I++ I+ GG+ + S +G + +P P + +C Sbjct: 652 QTGGTGLGLAISRRIVQAMGGELNVDSDEGQGSRLWFSIPLE---ESEPVETVSIANARC 708 >gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1] gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1] Length = 621 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +F++++SHELRTPL ++ + E + N ++ I + ++ +I Sbjct: 376 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETERMIRMI 433 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358 N++L LSR++ G + ++L D V + + +K I ++ Sbjct: 434 NDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPHQA 493 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI ++ Sbjct: 494 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 552 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL I++ I+ H G+ S G LP + Sbjct: 553 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPYEAIS 612 Query: 479 NF 480 Sbjct: 613 EE 614 >gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 905 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 15/251 (5%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R R E + K+ F+ ++SHELRTP+ +I GF++++ + +GP+ NET +E++ I + Sbjct: 656 RTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPV-NETQREFLNIIQSNA 714 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + ++ +IN++LD+++IE G EL I + + + + ++ LQ + E+ + + L Sbjct: 715 ERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSLPAGL 774 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------SGRGQYIS 404 V AD Q++ NL+SNAVK+T GG + + GR I Sbjct: 775 PLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRYIQID 834 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GIA ++P + F + +K G GLGL + + ++ GG+ + S++ Sbjct: 835 VRDTGVGIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVESRINV 894 Query: 465 GVEVIAILPNT 475 G +LP Sbjct: 895 GSTFSFVLPAA 905 >gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 912 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 9/309 (2%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + L + + + + + V+++ DD + ++ +A Sbjct: 166 QAAKLYLVKLFNYFTYLLSGLAFSVLALIVELMLQSKRSDDKHLQAIQLTKALEQNIIKA 225 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E AK+ FLA+MSHE+RTP+N I+G +I+ + + +Y+ + RS LL Sbjct: 226 EAATKAKTEFLATMSHEIRTPMNGIIGLGHLIQNTVLDQI----QSDYVRKMLRSADSLL 281 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 ++IN+ILD S+IE+G E+ + L ++ + ++ + RA EK + D L ++ Sbjct: 282 SIINDILDFSKIESGSIEIEQRDFHLDSLLEQVFVLNESRAIEKGLTFTIDRDFRLQDAL 341 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIP 418 D + Q+++NL+SNA+KFT G V ++V S+KD G GI +I Sbjct: 342 EGDSFRLNQILVNLVSNAIKFT-EHGAVSLSVAQIERFKDPWIRFSVKDTGVGIQPDKIE 400 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 ++ +F Q + G GLGL I + + GG+ ++S+L G E LP Sbjct: 401 SLFEAFKQEDSSTTRKYGGTGLGLAITKQLSDLLGGEIFVKSELGTGSEFRIELPLHPAN 460 Query: 479 NFIPEDNHE 487 + + E Sbjct: 461 TELRSASAE 469 >gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 422 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 15/305 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 LA + + F + V A + L+ + + + + Sbjct: 118 LAEVTEALGGTVGALLQAGFATWVTSEMHLAASESNHRALQQQNAELERAIAHLRDVDQL 177 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA++SHELRTPL +I+GFSE++ GPL NE EY I G+ LL LI +I Sbjct: 178 KSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPL-NEEQTEYANMILDRGEELLRLITQI 236 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L++S++E G L L D+V + A ++ + + L + D + Sbjct: 237 LEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRAHVNLVRDFADDLPLMLVDPDKV 296 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTV--------------GWTSGRGQYISIKDNGPGIAE 414 QV++NL++N +KF G V V G +S+ D G GI E Sbjct: 297 LQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEEDFFGEEVADAMRVSVSDTGIGIPE 356 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ + +F Q + G GLGL I + ++ HGG+ S + G LP Sbjct: 357 DQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIEAHGGEIWAESIVGVGTTFHFTLPL 416 Query: 475 TRVLN 479 Sbjct: 417 AEGAE 421 >gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains [Bradyrhizobium sp. BTAi1] Length = 1695 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 97/390 (24%), Positives = 164/390 (42%), Gaps = 24/390 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + L+ +I + L+ L + + + +++LS F FL Sbjct: 871 KRQRLISEIPSDVIPVGSALLRAVPKNLVVLPVLFENQVKAVIELASLSPFTTSQMTFLE 930 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + +I + + L A + L ++N ++ + + Sbjct: 931 QLTDSIGIVLNSIEATMQTEGLLKQSQQLA-AELQAQQRELQQTNEQLEQKAQQLAERNV 989 Query: 227 ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+E ++ R+ EE + KS FLA+MSHELRTPLN+IL + + Sbjct: 990 EVERKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPD 1049 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L + E+ IH +G LLNLI++ILDLS+IE+G + I +++ Sbjct: 1050 GNLTMKQV-EFARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPF 1108 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A+ + + +DP+L+ + D K ++QV+ NLLSNA KFTA GG V + V G Sbjct: 1109 RHEAENRLLSFNIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALG 1167 Query: 399 RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GI + + + +F Q G GLGL I+ Sbjct: 1168 GWSAEHPVLNTAPAVIAFEVSDTGIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAIS 1227 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + GG+ ++S +G LP Sbjct: 1228 RELANLLGGEIHLKSAPGKGSTFTLYLPLK 1257 >gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 503 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 134/272 (49%), Gaps = 13/272 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + + R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 109 RVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 164 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 165 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 224 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 225 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDG 281 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 282 DIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 337 Query: 460 SKLREGVEVIAILPNT-RVLNFIPEDNHESTQ 490 S+ +G A+LP ++ P + + + Sbjct: 338 SEFDKGSLFWAVLPCQFDSVDSEPTSSRRNNE 369 >gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] Length = 435 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 11/258 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I E + +S + + +AEE N K+ FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 176 QIIDERKKLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADT----E 231 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + KE+ I+ + LL ++++ILD+S+IEAG +L + L D++ E +++ Sbjct: 232 DIAEKKEFCNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMK 291 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A ++I D K ++Q++ N LSNA+K T G + +T G T +G Sbjct: 292 AAG-RLDIRIHKPGQGYMAELDTKRVKQILNNFLSNALKHTQE-GYIDITYGVTE-QGIE 348 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GI + ++P + F + S QGVGLGLPI +SI GG + S+ Sbjct: 349 IKVTDTGCGIPQDKLPVIFERFEKVD----SFTQGVGLGLPICKSIAECMGGSIGLTSEA 404 Query: 463 REGVEVIAILPNTRVLNF 480 G V LP + Sbjct: 405 GVGTTVWVTLPCSTAPTP 422 >gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 536 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 16/289 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L K ++ S I +AK + + +AE + AKS FLA MSHE RTP+N Sbjct: 120 LMKDELRERSISRSIRYAIERYRLAKD-LENEKLKAEAASKAKSEFLAVMSHEFRTPMNG 178 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G E+++ E G + E + + L LIN++LDLS+IE+ EL + Sbjct: 179 IIGGLEILKNEPAGDSSREIQ----SMMRECAFNQLELINDVLDLSKIESNSVELEIGPV 234 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 L D++ + L +A+ K+I++ +DPS+ S +D + +RQ++LNL+ NAVKFT Sbjct: 235 CLSDVITSTMGTLGFKAESKSIKLESFVDPSVPNSFRSDARRIRQILLNLVGNAVKFTDS 294 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V + V + G ++ D G GIAE +I V SF Q + + QG GLGL I Sbjct: 295 -GEVKLKVTSSLGGMLEFTVTDTGIGIAEADIKKVFESFSQVDGSYQRRYQGTGLGLTIC 353 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 + + GG+ + S+L G + +P + HE+ + + + Sbjct: 354 KRLTRILGGEIRVESQLGVGSKFSVTIPI---------EPHENIEKRGF 393 >gi|189197047|ref|XP_001934861.1| signal transduction histidine-protein kinase barA [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980809|gb|EDU47435.1| signal transduction histidine-protein kinase barA [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1326 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 709 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 768 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 769 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 824 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 825 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 883 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 884 MAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 943 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 944 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 987 >gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3] gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3] Length = 1406 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 11/260 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A +E + AE+ N K++FLA+MSHE+RTP+N I G +V+ + + Sbjct: 893 ITDNRNAFMELEEKGQAAEQANREKTQFLANMSHEIRTPMNGIFGMLDVLAYQEL----T 948 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + I S L+ L+++ L+LS+IE G E + + ++L+ I+ +I RA+ Sbjct: 949 QEQRLLVDSIRSSSFQLMRLLDDTLNLSKIEQGELESTPTTVNLLKIIEPTMIANSSRAR 1008 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SG 398 I + + + V+AD + + Q+I NLLSNA+KFT GG V + + W Sbjct: 1009 MSKISFSIIVSKNFPTLVYADSQLIMQIINNLLSNALKFTKKGG-VTLKMKWDSTPTSDN 1067 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +S+ D G GI+E + + F Q + G GLGLP+ Q I GG + Sbjct: 1068 EYLVVSVSDTGIGISEEQKKVIFERFMQAETSTSRYYGGTGLGLPLVQEIARFLGGNVDV 1127 Query: 459 RSKLREGVEVIAILPNTRVL 478 +S EG I +P ++ Sbjct: 1128 QSTPGEGSTFIVRIPMQSLM 1147 >gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 592 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 5/232 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTPL AI GF+E + +E +N +++ I+ Q + ++N + Sbjct: 365 RKDFVANVSHELRTPLAAISGFAETLMME---NSDNPAVQQFARIIYDEAQRMTRMVNSL 421 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS++E+ EL + L + + + R EK +++ ++ + V AD + Sbjct: 422 LQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRDRI 481 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NLL NA +F+ G V V + + D GPGI E E V F + Sbjct: 482 VQVLMNLLDNATRFSPPDGTVTVRGTLLP-GEILVEVIDEGPGIPEEEAARVFERFYRVD 540 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 A QGVGLGL I + I+ HGG+ +RS G LP R + Sbjct: 541 KARTRG-QGVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLPGKRATDE 591 >gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 795 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 21/291 (7%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNAILG 269 + +L + ++A + E R ++A+ N KS FLA+MSHE+RTP+N ILG Sbjct: 242 RTAQLTRANKELEQQAKLANDSAAEARELARQAKAANETKSSFLANMSHEIRTPMNGILG 301 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++E N + I S + LL ++NEILD S+IEA ++ ++ L Sbjct: 302 MLNLLED----MDNPADQADLILTAQDSAKSLLEIVNEILDFSKIEANAIDIEKTEFDLR 357 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 D + ++ L A +K +E+ +I + + D +RQ+ +NLL N++KFT G Sbjct: 358 DSIYGATDLVSLTAHDKGLELVAQIASDVPRYLIGDPLRIRQLCINLLGNSLKFTKE-GT 416 Query: 389 VHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V + + I D G GI ++ T+ F Q + G GLGL Sbjct: 417 VMLAVSKAAQQPRNATRLRFEISDTGMGIPPEKVDTLFDPFSQVDSSTTRNFGGTGLGLS 476 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 I + + G+ + S + EG + + ED+ +S K + Sbjct: 477 ICKKLAELMSGEIGVTSVVGEGSVFWFEI-------EVEEDSSKSKIEKSH 520 >gi|238917551|ref|YP_002931068.1| two-component system, OmpR family, sensor kinase [Eubacterium eligens ATCC 27750] gi|238872911|gb|ACR72621.1| two-component system, OmpR family, sensor kinase [Eubacterium eligens ATCC 27750] Length = 438 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 148/304 (48%), Gaps = 12/304 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 ++ + + ++ G+LA + ++ L ++ ++ + A+ D + E V K + Sbjct: 141 ASSLLSVFGNVFPAVTGILAVIIVVCIVLSQLLTRTLIEPIERMAKNMDSVQEKPVYKEI 200 Query: 235 S---DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ R + E ++ F A++SHEL+TPL AI G++E+IE E + ++E Sbjct: 201 APFAEKIRTQHENILAAARSRQDFTANVSHELKTPLTAISGYAELIENEMV---SHEQGI 257 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + +I R+ + LL+LIN+I+ LS ++ L + V++C LQ+ AQ++ I Sbjct: 258 HFAHEIKRNSERLLSLINDIIRLSELDHSEMPRQYENFDLYEFVKDCAESLQVNAQKQGI 317 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + + ++ +R++I NL+ NA+++ GG V V G + + D+ Sbjct: 318 YFSYRGSACM--IRGNKDMIRELIDNLVQNAIRYNKEGGHVEVFAGMV-DGKPRLEVTDD 374 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + V F + + G GLGL I + I+ H + + S++ +G + Sbjct: 375 GIGIPKDQQDRVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDARIYLDSEINKGTVI 434 Query: 469 IAIL 472 Sbjct: 435 RIEF 438 >gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004] Length = 927 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] Length = 997 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 613 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADAEEPEEKE 672 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI I + LL L+ +ILDLS+IE+G E S I L + +E +LR + Sbjct: 673 ----EYINIIENNNTLLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQK 728 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + I + V ++ + QV+ N+++NA+KFT G + + Y Sbjct: 729 NDAVVIRYLPEMPDCFVNIEKNRLTQVVTNMMNNAMKFTPS-GSITFGYHLKNTDFLYFY 787 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI + + TV F + S QG GLGL I QSI+ N GG+ + S+ + Sbjct: 788 ITDTGYGIEKDKKDTVFGRFVKLD----SFSQGTGLGLSICQSIVENLGGEIGVESEPGK 843 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP V + E Sbjct: 844 GSTFWFTLPYRPVELKSVREQKE 866 >gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 936 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] Length = 939 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10] gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516] gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis KIM 10] gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516] gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] Length = 933 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 587 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 1/227 (0%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + F+A++SHELRTP++ I G++E + M E ++ I R + L LI Sbjct: 356 EEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLI 415 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+IL LS +EA L +A+ + + + +L RA EK I + ++ +L D+ Sbjct: 416 NDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQ 475 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV++NL+ NAVK+T GG + + IS++D+G GI ++P + F Sbjct: 476 GRLEQVLVNLIDNAVKYTPEGGTIRL-FAEQGETFLRISVQDSGIGIPPRDLPRIFERFY 534 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + G GLGL IA+ I+ HGG+ + S +G L Sbjct: 535 RVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTSTPGKGSTFSFTL 581 >gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F] gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1] gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92] gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003] gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92] gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F] gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038] gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003] gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 930 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 785 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 11/256 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + + R +AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 401 ITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL----PSAETA 456 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G I+++ LL LIN+ILDLS+IEAG E + ++L ++ R + + R + Sbjct: 457 EEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVK 516 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D+ + QVI N L+NA KFT G + G + Sbjct: 517 E-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFTYE-GEIRFGFGRMDKD-IRVY 573 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ + F + S QG GLGL I + I+ GG+ + S+L + Sbjct: 574 VKDTGIGIESEKVDHIFERFVKL----NSFAQGTGLGLSICRMIIEKIGGEIGVTSELGK 629 Query: 465 GVEVIAILPNTRVLNF 480 G +P Sbjct: 630 GSTFYFTIPYEETGEH 645 >gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] Length = 1018 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 9/271 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + E++++AE N AKS+FL+SMSHELRTPLN+ILGF++++ PL+ Sbjct: 601 EAQRQYEQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLS-P 659 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + ++ I +GQHLL+LIN++L+L+RIEAG S +SL ++RE M+ A+E Sbjct: 660 RQQGFVEHIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARE 719 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT----VGWTSGRGQ 401 +++++ + + V D RQ++LNLLSNA+K+ GGRV + + + R Sbjct: 720 RDVQLLETLGDDPLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPV 779 Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+I D G GI + F + +G G+GL I + ++ GG+ Sbjct: 780 CLGIAISDTGIGIPADRQHRLFRPFERLGQ-ENGPIEGTGIGLMITKELVERMGGEIRFE 838 Query: 460 SKLREGVEVIAILPNTRVLN-FIPEDNHEST 489 S+ EG LP R P+++ S Sbjct: 839 SREGEGTTFFVFLPAHRAEAGTSPKNDARSP 869 >gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 598 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 6/235 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E ++ F+++++HEL+TPL +I GF E ++ + +++ I + Sbjct: 370 RKLE---QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVAV--KFLDIIDIEAE 424 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IEA R + S I L I+ E +++L+ A +KNI + PS Sbjct: 425 RLYTLINDILQLSEIEAMRKDDSVMEIDLRQIIDEVVLILKSSADKKNILLEVSTVPSHI 484 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + A ++Q+++NL+ NA+K+ G++ V +G ISIKD G GI E Sbjct: 485 QIIASRNRIKQMLINLIDNAIKYNVENGKICVKAEKNNGNTV-ISIKDTGIGIPEMHHSR 543 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + G GLGL I + I+ + G I S+ +G E I LP Sbjct: 544 IFERFYRVDKGRSRNMGGTGLGLSIVKHIINLYSGDIHIISEPGKGTEFIVKLPL 598 >gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM 12442] gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17] gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17] gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM 12442] Length = 466 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 13/316 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ + I + I+ + LS + H+ + Sbjct: 157 LIYDMGLILAPLAFVMILLTIWIGRKIIIA----ITKPLSQMERVANHMATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + F A++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++ IHR + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---QQQSKFTQLIHREAGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLET 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I +DP + V DE M+QV+ NLL NA+++T G + + + Sbjct: 326 YELKCMEKELYISTDLDPDII-VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLK-KKD 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 R + IKD G GI + + F + G GLGL I + I+ H G++ + Sbjct: 384 RQCELKIKDTGIGIDAEHLEQLGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRV 443 Query: 459 RSKLREGVEVIAILPN 474 S+ +G VI LP Sbjct: 444 ESEKGKGTTVIIKLPA 459 >gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 609 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + +F+A++SHELRTPL + + E + + + +I + + ++ Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKDIAPRFIQVVQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ I+ + I +L + NI +KI + Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG + V S +S+ D G GI + ++ + Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRKLSD-EIIVSVSDEGVGIPKADLAKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLPLER 600 >gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris str. B100] gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris] Length = 1364 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 13/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 676 GAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG + Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S G E ++ R P+ E+ Sbjct: 855 ESVPGRGSEFYFVITLERTDP--PKAQQEAA 883 >gi|170722660|ref|YP_001750348.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169760663|gb|ACA73979.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 643 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + + AE + A + + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 223 LGHLARHINNLASALEQASAEQKQAIAQLIQAREEAEQANGAKSEFLAMMSHELRTPMNG 282 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + EY S HLL +IN+ILD SRIE +L Sbjct: 283 VLGMLQLLETTQLTS----EQAEYTAVASESTGHLLKVINDILDFSRIERTTLQLEHIDF 338 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ +++ ++ V D +RQ++LNL+ NA+KFT Sbjct: 339 NLGELIASSVQSFQHSAQQRGLDLQLQLPTQSERLQVVGDPTRIRQILLNLVGNALKFTE 398 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G+V V W + Q + S++D G GI + + +F Q +I G GL Sbjct: 399 R-GQVQVEARWQALDRQTLWFTCSVRDTGIGIDSERLEMMFVAFQQADSSISRRYGGTGL 457 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GL IA+++ GG+ S G +P Sbjct: 458 GLSIARTLAERMGGKLRGESHEGLGSTFTLEMPLALASPAS 498 >gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 798 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 11/262 (4%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D+ +K A+E + AKSRFLA+MSHE+RTP+ +LG +E + + + E + Sbjct: 284 QELDDAKKAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSRDLDDQDAE----LVK 339 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ SG+ L ++N++LD+S+IEAG+ EL + I+ + + + +L A +K +E+ Sbjct: 340 TIYSSGESLQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKKGLELTT 399 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKD 407 ++ ++ D +RQ+ILNLLSNA+KFT G + V + W T+ +S+KD Sbjct: 400 VTHTAVPSTLTGDAGRLRQIILNLLSNAIKFTGD-GHIVVDMNWLPTNTTSGNLIVSVKD 458 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G G+ + + T+F Q + G GLGL I + ++ G +R G Sbjct: 459 SGIGLDDAAKNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDNEDHGSI 518 Query: 468 VIAILPNTRVLNFIPEDNHEST 489 +P + P + H +T Sbjct: 519 FTVTIPFKSIA-ISPVEPHATT 539 >gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1626 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 8/266 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + A + ++RAE AKS FLA+MSHE+RTP+NAILGF+ +I+ + + P Sbjct: 865 LEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRTPMNAILGFAHLIKRDPLTP 924 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + + HLLN+IN+ILD+S+IEA + EL L I+ ++ Sbjct: 925 SQLAQ----LEKLSAATHHLLNIINDILDISKIEANKMELGVEDFDLARIIDRIAALVAD 980 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV--GWTSG 398 K++E+F +D S + D + Q++LN++SNA+KFT G + V V Sbjct: 981 SVLAKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKFTEQGAVDITVRVVDAREDR 1040 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I+D G G++ ++ F Q ++ G GLGL I++ ++ GG+ + Sbjct: 1041 PVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTGLGLTISRQLVELMGGRMGV 1100 Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484 S+L G +P V P Sbjct: 1101 ESELGHGTLCWLEIPFE-VSPQAPAA 1125 >gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] Length = 612 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +S+ D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSVSDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] Length = 2384 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 28/283 (9%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRA--------------EEENLAKSRFLASMS 257 ++ A ++ + A + E +A E+ AKS FLA++S Sbjct: 1835 QEVRKVSAANAAMVEAQKRALVQAREAEHKAKVAEVQANHNVKLKEDAAKAKSIFLANIS 1894 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 H+LRTP+ ++G SE+++ + + Y+ I LL LIN+ILD S++EAG Sbjct: 1895 HDLRTPMTGVIGLSELLKATKL----DAKQDVYVESIRVCADTLLTLINDILDFSKLEAG 1950 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK---IDPSLSSVWADEKGMRQVILN 374 + ++S I+L + E + L+ ++K + + IDP+L V D + Q+ +N Sbjct: 1951 KMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNLL-VMGDPVRLHQIFMN 2009 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIA 430 LLSN+ KFT G V V + I + D G GI+E ++ + F Q + Sbjct: 2010 LLSNSYKFTPA-GSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQLVRLFRPFSQADSS 2068 Query: 431 IKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 + G GLGL I ++I+ GG+ ++SK EG V L Sbjct: 2069 TARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 621 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +F++++SHELRTPL ++ + E + N +++ I + ++ +I Sbjct: 376 EREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAP--KFLHVIQDETERMIRMI 433 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR-------AQEKNIEIFQKIDPSL 358 N++L LSR++ G ++ ++L D V + + +K I ++ Sbjct: 434 NDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIKREFPHQA 493 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI ++ Sbjct: 494 LWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGIPRKDLN 552 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL I++ I+ H G+ S G LP + Sbjct: 553 KIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPYEAIS 612 Query: 479 NF 480 Sbjct: 613 EE 614 >gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 597 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + + E KE I+ + Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKEMAKVIYDESLRMGR 421 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG EL + L+ + I A+EK IE+ + + Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAL 481 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T GG V + + SG G I ++D+G GI E ++P V Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A + G GLGL IA++I+ H G + SKL EG LP Sbjct: 541 FYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 1361 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 19/280 (6%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 V + ++ E + + E + K FLA+ SHELRTPLN ++G Sbjct: 556 AVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGMIGI 615 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +E + G L+ E ++ + I SG L L+N+ILD S++ L L + Sbjct: 616 AESMLEGATGTLS-ELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGLRE 674 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 I + + Q + K++++ I P L V ADE ++Q++ NL+ NAVKFT G + Sbjct: 675 ITEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTER-GSIT 733 Query: 391 VTVGWTS-----------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 V+ S +++ D G GI +I + SF Q + Sbjct: 734 VSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGSTAR 793 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL + + ++ HGG+ + S G I LP Sbjct: 794 QFSGTGLGLAVTKQLVELHGGKIWVESIENVGSNFIFTLP 833 >gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 850 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + ++ AE + AK RFL++MSHELRTPL +I+G++E + E Sbjct: 333 IRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDEH------ 386 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I++S +HLL ++NE+LD +RI +G++ + L ++ E + +QL+A+ Sbjct: 387 PEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAMQLQAE 446 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG-RGQ 401 EK++ + + ++ D ++Q++ NLLSNA+KFT G + V+ + Sbjct: 447 EKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKNELTEL 506 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I+++D G GI E +I + F Q + G GLGL I +++ GG I+S+ Sbjct: 507 RITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNIRIKSQ 566 Query: 462 LREGVEVIAILPNT 475 L +G +P Sbjct: 567 LGKGSTFDVFIPLK 580 >gi|78776617|ref|YP_392932.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78497157|gb|ABB43697.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 896 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 151/306 (49%), Gaps = 11/306 (3%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-EVAK 232 ++ + VL +A + S + KI AE DL EL E Sbjct: 306 IAIILAVLGFVLSNQIAKNIRNLESVLEKVAGDYDSKERKINLHTAEGTDLAYELLEDII 365 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + + A+E + AKS FLA+MSHE+RTPLN I+GF+E+++ + + E++ Sbjct: 366 EQTKMDKISAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDSGL----QQEQSEFVD 421 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I +S ++LL +IN ILDLS+IE+ + E+ + I + + +RA EK+I + Sbjct: 422 IIEKSSENLLEIINNILDLSKIESNKLEIENILFNPIVEFESAVEVYAVRASEKHINLGC 481 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIK 406 IDPSL + D ++++I+NLLSNAVKFT G ++V + I+ Sbjct: 482 FIDPSLEFWLKGDPTKLKEIIINLLSNAVKFTNNAGFINVNIRKIDSDKSTKTRVRFEIQ 541 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G G+ + + +F Q +I G GLGL I+ + + GG+ + SKL EG Sbjct: 542 DSGIGVTSEQKSKIFEAFSQADTSITRKYGGTGLGLTISSNFVELMGGKLDLESKLAEGT 601 Query: 467 EVIAIL 472 L Sbjct: 602 TFFFTL 607 >gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] Length = 618 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F++++SHELRTPL +I ++E + N E E++ I ++ Sbjct: 373 EKIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--ENKEIAPEFLNVIETETDRMM 430 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-----RAQEKNIEIFQKIDPS 357 +I ++L+LSR++ R EL + +++ ++V+ + + + +EKN I I Sbjct: 431 RMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQR 490 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D+ M QV+ N+++NA+K++ GGR+ V + T +S+ D G G+ +I Sbjct: 491 NLWVEIDQDKMTQVLDNIINNAIKYSPDGGRIIVRLMETHTD-LIVSVSDEGLGVPRKDI 549 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 P + F + A A G GLGL I++ ++ HGG+ + S +G LP Sbjct: 550 PHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605 >gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB] gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB] Length = 1214 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 17/370 (4%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 R L++ + WT+ GT E+ + L+ A++ + + L Sbjct: 444 ARKKLVIFETLDEPKWTVAG----GTSVDEFTALSDRIVWLVIAGGLAMATTIFVIILIL 499 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 ++ L++Q + + H + + + + S + Sbjct: 500 LRKLILNPLNSQVLPTFHAISAGHFDTALDVRG-----NDEMAQVVQGLESLRNRLAYNN 554 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ + R+ AE A++ FLA+MSHE+RTPLNA++G + ++ +G E Sbjct: 555 ERERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLG----E 610 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 EY+ I +G+ LL ++N++LD S+I+AG+ +L ES+ L D++ +++ RAQE Sbjct: 611 REMEYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQE 670 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQ 401 KN+ + + P + + D + Q+++NL+SNA+KFTA G V + V Sbjct: 671 KNLVLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIEL 730 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I+D G G++ + + +F Q ++ G GLGL I++ ++ GG S Sbjct: 731 EFRIQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSV 790 Query: 462 LREGVEVIAI 471 + G Sbjct: 791 PQVGSTFSFR 800 >gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar Microtus str. 91001] gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola] gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis Angola] Length = 921 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 1364 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 11/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A+ N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 676 GAAQDMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG+ + Sbjct: 795 VKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDN 485 S G E ++ + + + Sbjct: 855 ESVPGRGSEFYFVVTLEKAASPKSHQD 881 >gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 481 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 105/446 (23%), Positives = 183/446 (41%), Gaps = 32/446 (7%) Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 +F W + + I V+ + I + + T T Sbjct: 42 VLLVVFGGWVSSCFGFNFNETVIFD--LRFVPLIIAALVYPRSYTLIIIGVAIGLTRFTF 99 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV---------ALSTQ 177 +L A + + S + V L Sbjct: 100 GL-NMAAWVGFLNMSILGVLCAGLNYWMRRSTWRLIIKASVTILAVNIVNTLNIAFLGVI 158 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----VAKS 233 + L + LSF + F+ + + ++L++E AK Sbjct: 159 PWRYYVAEVVPLTLPIGVILSFLFALILRDFQMEQQRNYQIQQANELLSEQRDKLQKAKV 218 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + +E K+ + KS F+A+MSHELRTPLN+I+ +++I E L+ + +Y Sbjct: 219 ILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKELDEDELYQYSDL 277 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ SG LL LIN+ILDLS++EAG E+ +S+ +I + ++ ++ A++KN+E K Sbjct: 278 IYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVTAKDKNLEFNLK 337 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------SGRGQYISI 405 + + + +D K ++Q++ NLLSNA KFT GRV + + G ++ Sbjct: 338 VHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHK-GRVLLEISTQHLDRKGQEGDWVVFAV 396 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + + +F Q + +I G GLGL I++ GG + S+ +G Sbjct: 397 KDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEGKG 456 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491 LP P D+ E+ + Sbjct: 457 STFSLYLPM------CPSDSKEADEQ 476 >gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1039 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 652 QVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE 711 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I + LL LI++ILDLS+IEAG E S I L +++ L+L+ Sbjct: 712 K----QEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLK 767 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQ 401 + ++++ + V ++ + Q+I+NL++NA+KFT+ G + G+ G+ Sbjct: 768 LKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGS---IRFGYEHRGKEL 824 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y + D G GI + + ++ F + S QG GLGL I ++++ + GG + S+ Sbjct: 825 YFYVTDTGCGIPKDKQESIFGRFVKL----NSFAQGTGLGLSICRTLVEHMGGHIGVDSE 880 Query: 462 LREGVEVIAILP 473 +G LP Sbjct: 881 QGKGSTFWFSLP 892 >gi|32400390|dbj|BAC78684.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 899 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 130/245 (53%), Gaps = 16/245 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ F+ +MSHELRTP+ AI GF++++ + +GPL N+T +E++ IH + + ++ Sbjct: 650 EADRLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPL-NDTQREFVNTIHSNTERMIA 708 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LD+++IE+G +L ++ L++++ I +Q + E+ I P + V A Sbjct: 709 LINDVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIPPGMPLVRA 768 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------QYISIKDN 408 D + Q++ NLLSNA+K+T GG++ V ++I+D Sbjct: 769 DAHRLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNIRDT 828 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F + +K G GLGL + + ++ G+ + S + +G Sbjct: 829 GVGIDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQGSTF 888 Query: 469 IAILP 473 +LP Sbjct: 889 SLLLP 893 >gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] Length = 1410 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 12/277 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 QA+ D++A K + AEE N AKS FL++MSH++RTP+NAI+G + + Sbjct: 996 QADVTDMLAAERKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAIIGMTTLA--- 1052 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + + I S +HLL+LIN+ILD+S+IE+ + L+ I L D++ + Sbjct: 1053 VAHLGDSGRVADCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLPDMLEKLSA 1112 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ +A E I + + + + D + Q+++N+LSNAVK+T GG V Sbjct: 1113 IIAPQAGEAGIRFDIRTEGIRHNYFYGDALRIDQILINILSNAVKYTREGGSVMFAAEEI 1172 Query: 397 SGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 Q ++ D G G+ E + + F + A +G GLGL I + ++ Sbjct: 1173 PSVRQAGWLRYRFTVSDTGIGMTEEFLEHIFDPFAR--SAGTQRIEGTGLGLSITKGLVD 1230 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 GG+ ++S EG L + E Sbjct: 1231 LMGGEISVQSTPGEGSCFQVELECESAKEAEADRKAE 1267 >gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 609 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + +F+A++SHELRTPL + + E + + + +I + + ++ Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW--QDKDIAPRFIQVVQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ I+ + I +L + NI +KI + Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG + V + +S+ D G GI + ++ + Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRKLAD-EIIVSVSDEGVGIPKADLAKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLPLER 600 >gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E + ++ R RAE+ + KS FLA+MSHE+RTPLNAI+GFS+++ M Sbjct: 266 RVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLL----MV 321 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E +E+I I+ + + LL LIN+ILDLS+IEAG EL L E + Sbjct: 322 TEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMH 381 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + +V D+ + Q++ N ++NA+K+T+ G + +G+ Sbjct: 382 RRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---MIEMGYEKIDG 438 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI E + V F + QG GLGL I ++I+ G+ Sbjct: 439 NIRLYVRDTGIGIPEDKKDKVFHRFEKLDE----FAQGTGLGLSICKAIVEACRGEIGFE 494 Query: 460 SKLREGVEVIAILP 473 S+ +G A+LP Sbjct: 495 SEFDKGSLFWAVLP 508 >gi|148977411|ref|ZP_01814011.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145963363|gb|EDK28628.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 827 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 13/277 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ + Sbjct: 313 EIGHLIKTFNEKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 372 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N ++++ ++ SG H++ L+NEILD S+IE GR +L E+ L I+ + Sbjct: 373 ----NAEQEKHLKSLYESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 428 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + EK ++ + PS ++D+ +RQ++ NLL+NAVKFT+ G V V + Sbjct: 429 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEMVE 487 Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I ++D G GI++ + F Q + G GLGL I + I G Sbjct: 488 GSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKITQLMDGN 547 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S+ G L ++ P + ES +K Sbjct: 548 ITVTSEEGIGTSFDVRL---KIQPCQPGEI-ESLPHK 580 >gi|32400396|dbj|BAC78687.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1145 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 527 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 586 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 587 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 642 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 643 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 701 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 702 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 761 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 762 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 805 >gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 708 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 11/267 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+ ++ E L R AE N K FLA +SHELRTPLNAILG+S++++ + Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKL 366 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P + + I R+ + LI ++LD+SRI G+ ++ + ++L+ ++ + + Sbjct: 367 EP---ARTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETM 423 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +L A+ K I++ + V D ++QV+ NLLSNAVKFT GG++ V++ Sbjct: 424 RLAAESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKV-DG 482 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GI +P V F Q + G+GLGL I + I+ HGG + Sbjct: 483 YAQIVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQ 542 Query: 460 S-KLREGVEVIAILPNTRVLNFIPEDN 485 S +G LP +PE++ Sbjct: 543 SLGEEQGASFTVRLPI------LPEED 563 >gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] Length = 924 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELDILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|153810329|ref|ZP_01962997.1| hypothetical protein RUMOBE_00710 [Ruminococcus obeum ATCC 29174] gi|149833508|gb|EDM88589.1| hypothetical protein RUMOBE_00710 [Ruminococcus obeum ATCC 29174] Length = 979 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 158/317 (49%), Gaps = 11/317 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++L +SL + + + ++ K + L ELE + Sbjct: 528 FIQDNLLTVSLIAGIFFFVVLCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 587 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A+ N AK+ FL +MSH++RTP+N I+G ++E + E K+ + I+ Sbjct: 588 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERTKDCLNKINE 644 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL+L+N++LD++++E+ S+ +I+L + +E L +A+EK + + + D Sbjct: 645 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLYFQAEEKGLHVIGEHDD 704 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411 S VW++ ++++++NL +N++K+ + G ++++ + + IKDNG G Sbjct: 705 YSGIYVWSNAVHLKKILMNLFTNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIG 764 Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E I + T F Q + +S G GLG+PI + ++ GG + SKL EG Sbjct: 765 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGIITVESKLGEGSCFTV 824 Query: 471 ILPNTRVLNFIPEDNHE 487 ILP N PE+ + Sbjct: 825 ILPFKIDTNARPEEKED 841 >gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 590 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY-KEYIGDIHRSGQHLLN 303 + F+A++SHEL+TP+ +I GF+E + G +++ K++ I + L Sbjct: 359 LEQVRKDFVANVSHELKTPVTSIKGFAETLLD---GAIDDPVLSKQFTEIIWKESDRLQM 415 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI ++L+LS+IE +++L +SL DI + +++ +A+EK + + + + S + Sbjct: 416 LIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQ-EQGSSVIEG 474 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + ++QV+LNL+SNA+ +T GG V V + + ++D G GI E + Sbjct: 475 DWQRLKQVVLNLVSNAISYTPSGGHVTVALKEQKD-AVVLKVQDTGIGIDPKETLRIFER 533 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I + + H + ++S+ +G E P + Sbjct: 534 FYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPKKQ 586 >gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM 22836] Length = 916 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 13/272 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +AE+ + KS FL++MSHE+RTPLNAILGFS +I + Sbjct: 537 ITELKQIEKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAET----DDQ 592 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y + + LL L+NEILD S+IE+G E + E + Sbjct: 593 EKRNYYFNFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCH 652 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYI 403 E+ + + +D + QV+ NL+ NA KFT G ++ G + Sbjct: 653 -PETELIYNNIGAELWIRSDRNRIHQVLSNLIINAQKFTKKG---YIKYGFEVIDNNVKV 708 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D+G GI E ++ + F Q S G GLGL I +SI+ GG+ + S+L+ Sbjct: 709 YVNDSGIGIVEDQLDKIFERFMQVD----SNAIGTGLGLAICRSIVERLGGEISVTSELQ 764 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 +G LP + N+ E+ + K Y+ Sbjct: 765 KGSCFTFTLPYEPIRNWEAEEGNSENSIKPYS 796 >gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1170 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + + D EL +A+ + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G S++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + A GG + S +G +LP V E Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQAPQAPGSE 731 >gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP+ I G++E + + + E ++ I + L +LI ++ Sbjct: 365 RRDFVANVSHELRTPVTVIKGYAEALA-GGLVEEDPERAGRFLEIICSHSERLADLIRDL 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS++E+G +L + I L V +L+ +A K I I V AD + Sbjct: 424 LTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRL 483 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NL+ NA+K+T GG + ++ + +S+ D G GI ++P + F + Sbjct: 484 EQVLINLMDNALKYTPPGGTITLSAD-EADGMVRVSVHDTGIGIPPKDLPRIFERFYRVD 542 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A E G GLGL I + I+ HGG + S+ +G L Sbjct: 543 AARSRDEGGTGLGLSIVKHIIQLHGGNITVESEHGKGTTFRFTL 586 >gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1364 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 13/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 676 GAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG + Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 S G E ++ R P+ E+ Sbjct: 855 ESVPGRGSEFYFVITLERTDP--PKAQQEAA 883 >gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] Length = 740 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 6/236 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 AK F ++MSHELRTPLNAILGF ++ + +++ + EY+ + S + LLNL Sbjct: 371 AQKAKEEFFSNMSHELRTPLNAILGFLNILNKQI----SDKKHLEYLRHVGTSSKQLLNL 426 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WA 363 IN+ILDL++I+ G + + + + +++ + +KNI + I L V Sbjct: 427 INDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIG 486 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q+ILNLLSNA+KFT GG + + + + + + ++D G G++ + Sbjct: 487 DLFRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIV-VQDTGIGMSPDVQDKIFKP 545 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F Q + G GLGL I Q ++ G+ ++ S+ +G +P ++ + Sbjct: 546 FVQADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIPMQKISS 601 >gi|125987876|dbj|BAF47077.1| CnNIK1 [Cryptococcus neoformans var. neoformans] Length = 1383 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 797 SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 856 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + + LL +I++ILD+S+IEAGR + + SL V Sbjct: 857 ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 912 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A + +++ +DP++ + D +RQVI NL+ NAVKFT G+V ++ Sbjct: 913 LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 971 Query: 395 WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 972 VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1031 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + G + S+ +G Sbjct: 1032 VNLMSGDLWVESEYGQGSRFYFT 1054 >gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429] gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429] Length = 465 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 9/243 (3%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + ++ ++ + K+ F+A++SHELRTPL+A+ ++E + ++ E+ KE++ I+ Sbjct: 227 EMELEKLKQLDKIKTEFVANISHELRTPLSAVKAYTETLLN---MEIDPESQKEFLSIIY 283 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + L +L+N++LD + I++G EL S ++ ++V + + L AQ++++++ ++ + Sbjct: 284 EQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKECE 343 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGI 412 + AD++ + QVI NL+ NA+KF V + V I ++DNG GI Sbjct: 344 D--VEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLED-ILIIEVEDNGIGI 400 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + E + F + ++ G G+GL I + I+ HGG + S+ ++G + Sbjct: 401 PKSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNI 460 Query: 473 PNT 475 P Sbjct: 461 PIR 463 >gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242] gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 883 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 119/400 (29%), Positives = 184/400 (46%), Gaps = 6/400 (1%) Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 A L+L + + + LL V + + Sbjct: 487 AATLLTLRRNHHRPRGPDESALALAREMEARLARVRANNNLLRAVLESDGSAIAIVCDDG 546 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVA--LSTQAIMSMHVLDISLAGMLATALSFF 200 +AL L + A T A + V TA + Sbjct: 547 LIESATAGFAALFGAETGAFDGLPLASLFAAQEGRTIAGLISRVKSEQNETARLTARARG 606 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 I L + V + A+ + R AE + AKS FLA +SHE+ Sbjct: 607 VPIEASLQRLPVGAGKICVRLKEPAADRR--NDELEAARVAAEHASAAKSDFLARVSHEI 664 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLNAI+GF+EV+ E GP+ +E YKEY+ D+H SG H+L+L+N++LDLS+IEAG+ E Sbjct: 665 RTPLNAIIGFAEVMMEERFGPIGSERYKEYLKDVHASGTHVLSLVNDLLDLSKIEAGKLE 724 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 LS + I+ EC+ ++Q +A + + + + L + ADE+ ++Q++LNLLSNAV Sbjct: 725 LSFERVDANAIISECVSIMQTQANQGRVVVRLALAQRLPPIRADERSLKQILLNLLSNAV 784 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KF GG+V V+ T I +KD G G+++ E+ T L F Q A +G GL Sbjct: 785 KFNEPGGQVIVSTALTEAGYVVIRVKDTGVGMSDDEVETALEPFKQI--ATSRKVRGTGL 842 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GLP+ ++++ + F I+S+ EG + P +VL Sbjct: 843 GLPLTKALIEANHASFTIKSRKNEGTLIEVAFPPPQVLAA 882 >gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 611 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + ++ + ++ Sbjct: 371 EKIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I I + I ++ +E+++E +++ V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDRFEMT-KEQHVEFIRQLPDRSLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V +V YIS+KD G GI + ++ + Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEEEELLYISVKDEGIGIPKKDMEKIF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G V LP Sbjct: 548 ERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 599 >gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82] gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164] gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82] gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164] Length = 934 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 242 RLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELR 301 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + L+NE Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 302 TPLNSIDGFIHLMLRQ--DNLSNE-QNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLEL 358 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + L + + + + ML A +K I++ + + D +Q++ NL+SNA+ Sbjct: 359 ETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYGDDVPQYIVGDVLRFKQILTNLISNAI 418 Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V + S++D+G G++ + + SF QG ++ Sbjct: 419 KFTPD-GEIIVRARMEQDGMEQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSVTRQFG 477 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ GQ +G Sbjct: 478 GTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFT 517 >gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 569 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 16/278 (5%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + ++++ A++ ++ AEE + KS FLAS +HELRTPLN I+G Sbjct: 283 AEIELIQELADQVGTAIAHATLYQELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIG 342 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F ++I + + +E++ + H+S HLLNLIN+ILD+++IEAG+ +L ++ L Sbjct: 343 FLKLILDGM--ADDAQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLELGSVELA 400 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + +AQ K++ K+ +L V+ + + + QV+LNL+SNA+KFT G Sbjct: 401 ELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHE-G 459 Query: 388 RVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 + V +S+ D G G++ + + F Q + A G Sbjct: 460 SIVVNAEIVKKKIDHQHQEFPGLVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGG 519 Query: 438 VGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 GLGL I+Q ++ GGQ S G V +P Sbjct: 520 TGLGLAISQKLIQAMGGQVEFYSMGEGLGSTVTFTVPL 557 >gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 L +S+F+A++SHEL+TPL +I GF+E ++ ++ET ++++ I + + L LI Sbjct: 347 ELMRSQFVANVSHELKTPLTSIKGFAETLK----FVKDDETREKFLDIIDKEAERLSRLI 402 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+IL LS IE+ + ++ E I +++ A KNI++ D + ++ D Sbjct: 403 NDILVLSNIESN-LAVDMHEFEPGSVIEEVINIMRKTAINKNIKLEF-KDNNSEKIFGDR 460 Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 Q+ LNL+ NA+K++ G+V V + + + + +KDNG GI + +I + F Sbjct: 461 DKFHQLALNLIENAIKYSKDTSGKVEV-LSYNEDKYYCLRVKDNGIGIPKEDISRIFERF 519 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + G GLGL I + I+ G+ ++S+L G +P Sbjct: 520 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEIYVKSELGVGTCFEVKIP 566 >gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis] Length = 611 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 372 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 430 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLW 489 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 490 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 548 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 607 >gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01] gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01] Length = 1005 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + R AE+ + AKS FLA+MSHE+RTP+N +LG + +++ + PL Y I+R Sbjct: 458 KARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL----QSGYADIINR 513 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG++LL ++N++LD S+IEAG E+ ++ L +V++ +++ RA EK + I+ Sbjct: 514 SGKNLLAILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIEN 573 Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAE 414 + W D + Q++ NL+ NA+KFT G + +++ + D G GI Sbjct: 574 DVQRYWRGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGIDA 633 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 E + +F Q G GLGL I++SIM G + S+ EG + LP Sbjct: 634 SEQACLFDAFTQTDSGRN-KTGGTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLPL 692 Query: 475 T 475 Sbjct: 693 E 693 >gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1082 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 152/271 (56%), Gaps = 23/271 (8%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + + AE+ N AKS+FL++MSHELRTPLNAI+GF++++ Sbjct: 581 ISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQLLGR---DSSLT 637 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + ++IG I RSG+HLL+LIN +L LS++EAG+ +L+ + L +++ M +L+A+ Sbjct: 638 QEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVLEEMFKLQAE 697 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 K +++ D +L V DE +RQV++NL++NA+KFT+ GG V + V G Sbjct: 698 NKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGG-VTLRVKAVQGEMGES 756 Query: 399 ------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + I+D G GIA EI ++ +F Q KS +G GLGLPI+Q Sbjct: 757 TRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRKS-LEGTGLGLPISQ 815 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + GG+ + S+L +G + RV Sbjct: 816 QFVRLMGGEIHVSSRLNQGSIFTFDIDVNRV 846 >gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120] gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120] Length = 565 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 143/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 300 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 354 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 355 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 412 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++R+ I + A+E +E+ +++ D M QV++NL+ NA++ T Sbjct: 413 APLLRKVISNFDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGY 472 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 473 AGKVILKQTIDEAESNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 532 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ H G+ + S+L +G + I LP + Sbjct: 533 IVKNIVEAHNGKISVESELGKGSDFIITLPLYK 565 >gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales bacterium TW-7] gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales bacterium TW-7] Length = 936 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 10/296 (3%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + L L++ + + Q L ++ + + + N Sbjct: 418 LTVFIFVLLFLVIVTGVALYRRGAEKRAKQY----LAEQVAQRTAELQDVAQELRAANDV 473 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA++SHE+RTPL AILG ++ + P E K+ + I R HL +LIN++ Sbjct: 474 KSQFLANVSHEIRTPLTAILGQTDDLMNGLYEP---EQLKDELAIIQRHSNHLKSLINDV 530 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKG 367 LDLS+IEA R EL+ S ++ +V + M +A+ KN+ + + D Sbjct: 531 LDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLRLVLENKVGDEFYTRLDIMR 590 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NL +NA+KFT G+V + + T I +KD G G+ ++ + F Q Sbjct: 591 VKQILINLCANAIKFT-QSGQVLIALNKTEQGIVLI-VKDTGIGMNSSQLKLIFEYFSQA 648 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 +I G GLGL ++Q + + GG ++S+ ++G + LP +V + + Sbjct: 649 DNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQFSFFLPCAQVSSDQSD 704 >gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 998 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 151/318 (47%), Gaps = 23/318 (7%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 V+ I S + I+ A L +S I + L + + +L Sbjct: 285 VLMKQVSTIESQRFILIAAAVTLLLVISLIVVIFRGYRSKHRLALQLEGKSRELGV---- 340 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + + AKSRFL++MSHE+RTP+N ++G +E++E + EY Sbjct: 341 -------ANDKLVQVTEAKSRFLSAMSHEIRTPMNGVIGMAELLEGTDLTN----QQGEY 389 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I +S LL LIN+ILD S+IEAGR +L +L DI+ + + L LRA EK+IE+ Sbjct: 390 VSLIIKSADTLLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIEL 449 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISI 405 I P + + D +RQVI+NL+ NA+KFT + G V V + S + Sbjct: 450 TFHIPPDIPDKLIGDPLRLRQVIVNLVGNAIKFTEV-GEVAVDLLLQSISDSDIQLVFEV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D+G GI++ + V +F Q + G GLGL IA+ + GG +RSKL EG Sbjct: 509 RDSGIGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEG 568 Query: 466 VEVIAILPNTRVLNFIPE 483 + L PE Sbjct: 569 STFSFS--ASFGLPEQPE 584 >gi|321253934|ref|XP_003192904.1| protein-histidine kinase [Cryptococcus gattii WM276] gi|317459373|gb|ADV21117.1| protein-histidine kinase, putative [Cryptococcus gattii WM276] Length = 1390 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 804 SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 863 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + + LL +I++ILD+S+IEAGR + + SL V Sbjct: 864 ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 919 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A + +++ +DP++ + D +RQVI NL+ NAVKFT G+V ++ Sbjct: 920 LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 978 Query: 395 WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 979 VKRYVTVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1038 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + G + S+ +G Sbjct: 1039 VNLMSGDLWVESEYGQGSRFYFT 1061 >gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72] gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72] Length = 916 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 178/402 (44%), Gaps = 24/402 (5%) Query: 99 KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158 + ++R + +G+ L+ L + ++ + Sbjct: 401 AEERLALFRRVIDASSQCVGIADGTGRLLYQNRAHARLLGYEDDEIAGMPVA-----RLL 455 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 + + + + + G + T+ S ++ ++ Sbjct: 456 PLDDGGVLAAQIFGMVQDARGLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFT 515 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++L E+A E + AE N AKS FL+SMSHELRTP+NA+LGF++++E Sbjct: 516 DFTEELARRNELA-----EAKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLE--- 567 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ + +I ++G HLL LINE+LDL+RIEAGR +LS ++L + V +C + Sbjct: 568 CDDTLTADQRDNVAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQL 627 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +Q A + I + + L V AD ++QV+LNLLSNAVK+ GGRV + Sbjct: 628 IQPLAAARAIVLEMSLPDELV-VRADRTRLKQVLLNLLSNAVKYNREGGRVSL-AAQCRE 685 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +S+ D G GIA + + F + A SA +G G+GL I + +M GG+ Sbjct: 686 GRLRLSVSDTGAGIAPERMAALFEPFERL-GAEASAIEGTGIGLTITRRLMELMGGEIGA 744 Query: 459 RSKLREGVEVIAIL----PNTRVLNFI----PEDNHESTQYK 492 S++ EG L P + VL + P E + + Sbjct: 745 ESRVGEGSTFWIELFLDDPASGVLAPLGEVEPGAAPEVVERR 786 >gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] Length = 590 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 6/239 (2%) Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R +EE L KSR F+A++SHELRTP++ + G+SE I + +E KE I+ Sbjct: 355 RDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKEIAQVIYD 412 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 + L+NE+LDL+R+EAG +L ++++++ + Q A+EK+I++ Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKI 472 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 D M QV+ NL+ NA++ T G V + + + ++S++D G GI + Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDTGAGIPKE 531 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++P V F + A + G GLGL IA++I+ H G + S+L EG LP Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590 >gi|288940234|ref|YP_003442474.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895606|gb|ADC61442.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1062 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 9/279 (3%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + F I + + ++ L + + ++ AE N AKS FLA+M Sbjct: 483 VGTFAVIFSDVTEQRQAEHELFEYREHLETLVASRTAELALAKQEAERANQAKSLFLANM 542 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTP+NAI+G + ++ E + ++ + I + +HLL++IN+ILD+S+IEA Sbjct: 543 SHEIRTPMNAIIGLTHLLGREI----SVPAQRDRLLKIDGAAKHLLSVINDILDISKIEA 598 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G+ EL S S ++ + ++ + Q K ++ P + D +RQ +LN L Sbjct: 599 GKLELQTSDFSPRVLLDQVSALIAEQVQSKGLDYRVDAGPLPVVLHGDATRLRQALLNYL 658 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT GR+ + + D G GI E + T F QG + Sbjct: 659 GNALKFTER-GRIQLQARLLEDGNEDALISFEVIDTGIGIPEEMQGRLFTLFEQGDGSPI 717 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + I GG + S +G Sbjct: 718 RRYGGTGLGLAITRRIAELMGGSAGVESVPGQGSRFWFT 756 >gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 664 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 139/308 (45%), Gaps = 19/308 (6%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 I+ ++ + + +L + E + A + AK+ FLA+ SH Sbjct: 231 MLDKISERDTSLREVNINLEKLVEQRTKDLRIQNLALQEAMETANAASKAKTEFLATTSH 290 Query: 259 ELRTPLNAILGFSEVIEL-ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 ELRTPLN I+G+ E I+ + GP +N+ + I +S + LL LI +ILD SRIE+G Sbjct: 291 ELRTPLNPIIGYVEKIQRAQPNGPHSND-----LRLIKQSAEQLLRLIEDILDFSRIESG 345 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS------LSSVWADEKGMRQV 371 +L I + ++ + +L +A++K +++ + + + D +RQV Sbjct: 346 TLKLENDQIDVEELCESVVKLLSEQAEQKGLDLNYSFNENRELGMPEKDISIDAGRLRQV 405 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +LNL +NA+KFT G V + I + D G GI + + F Q Sbjct: 406 LLNLTNNAIKFTNE-GSVTIKCSLNHDPSEKADLIIEVIDTGIGIDSQDQDKLFKPFSQL 464 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + G+GLGL I Q I+ GG+ S++ G A +P L+ ++ + Sbjct: 465 DSSWTREYGGMGLGLAICQRIVKAMGGRLTCFSEIGRGSRFSAQIPVE--LSERIIESTK 522 Query: 488 STQYKCYA 495 K ++ Sbjct: 523 QRPQKSFS 530 >gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01] gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01] Length = 817 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 13/279 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + E LI + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ Sbjct: 311 EDEIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT 370 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + N ++++ ++ SG H++ L+NEILD S+IE GR +L E+ L I+ Sbjct: 371 PL----NSEQEKHLKSLYESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINS 426 Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + + EK ++ + PS ++D+ +RQ++ NLL+NAVKFT+ G V V + Sbjct: 427 VYFTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEV 485 Query: 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 S I ++D G GI++ + F Q + G GLGL I + I Sbjct: 486 IEGSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMD 545 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 G + S+ G L ++ P + ES +K Sbjct: 546 GSITVTSEEGIGTSFDVRL---KIQPCQPGEI-ESLPHK 580 >gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 2107 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 149/346 (43%), Gaps = 21/346 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + + + F FL + + I + D L A T L Sbjct: 1302 VIELGSFQIFSSIQLAFLDELIESLGIVVATIEATMRTDELLRQSRNLAE-ELTTQQEEL 1360 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260 ++N ++ + + +E+E + R+ EE + KS FLA+MSHEL Sbjct: 1361 QQTNEELEEKARQLTEQKSEVERKNQQVELARQELEEKAEQLALTSRYKSEFLANMSHEL 1420 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN++L S + L+++ EY IH+SG LL+LINEILDL++IE+G Sbjct: 1421 RTPLNSLLILSRQLATNRDNNLSDKQV-EYASTIHQSGADLLSLINEILDLAKIESGTMA 1479 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + S++S + + + A E + + L + + DE+ +RQV+ NLLSNA Sbjct: 1480 VEVSSVSFSQLSDYVERLFRQVADESGVVYQIECADELPAAIETDEQRLRQVLRNLLSNA 1539 Query: 380 VKFTAIGGRVHVT---VGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 KFT G V + V + S+ D G GI + + + +F Q Sbjct: 1540 FKFTKK-GEVMLRMSTVKPEADGDYGDEPFLVAFSVSDTGIGIPKDKQRIIFEAFQQADG 1598 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ I GG+ + S+ G LP + Sbjct: 1599 GTSRRFGGTGLGLSISREIAELLGGELDVESEPGRGSTFTLYLPPS 1644 >gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 705 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 10/274 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + +S ++K A+ N AKS FLA+MSHE+RTPLN ILG +++E N Sbjct: 301 ITEKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGILGMLQLLEST----QTN 356 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI SG++L LI+ ILDLSRIE G L ++ ++ + + Sbjct: 357 HQQSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIKHLIDDIVNTFITELS 416 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---G 400 K + I I + V + D +RQ+I N++ N++KFT G V +++ + Sbjct: 417 SKKLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKFTP-FGSVAISIDSLTSGNTIH 475 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I I D G GI E ++ + F Q ++ GVGLGL I + + G + S Sbjct: 476 VFIEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVKKQLLAMEGSITVES 535 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G + +P +PE + C+ Sbjct: 536 NESGGTKTCIAIPFKTNEPSLPEYTDKICD-SCF 568 >gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 2003 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 DL A+++ ++ AE + AKS FL+SMSHELRTPLN I+G ++++E P Sbjct: 1503 RDLEAKIKERTVELRIAKEAAERASQAKSDFLSSMSHELRTPLNGIMGHAQILERT---P 1559 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E + I +S +HLL+LIN++L L++IEAG+ + + L +VR + + ++ Sbjct: 1560 DVPPAWREGLRVIQKSSEHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVDLCRV 1619 Query: 342 RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--- 397 RA+ K I + P+L +V ADEK + QV+LNLL NA+KFT GG V + V Sbjct: 1620 RAEAKGITFSDELRGPALQAVCADEKRLMQVLLNLLGNAIKFTERGG-VSLHVEVLEETV 1678 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 GR I+D GPGIA + + F Q + +G GLGL I + ++ GG Sbjct: 1679 PAGRMVRFRIEDTGPGIAPEHLSRIFEPFEQV-GEQSAKSEGTGLGLAITKKLVQQMGGA 1737 Query: 456 FLIRSKLREGVEVIAILPNTRV-LNFIPEDN 485 ++S++ EG LP L P + Sbjct: 1738 IEVQSEVGEGSVFAVTLPLAEAQLAASPGEA 1768 >gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 939 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 6/275 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F I+ + + + ++ L + + ++ A+ N AKS FLA MSH Sbjct: 429 FLLGISRDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSH 488 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG++++++ + + + I RSG+HLL LI++ILD+++IEAGR Sbjct: 489 ELRTPLNGILGYAQILKR---DKNLDRRQVDGLMVIQRSGEHLLTLIDDILDMAKIEAGR 545 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 EL+ S + L + + ++++A EK +E ++ P L + V DE +RQV+LNL+S Sbjct: 546 MELNFSDVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRVDEIRLRQVLLNLIS 605 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA++FT G V + VG+ ++D G GI E + + F Q S A G Sbjct: 606 NAIRFTEQ-GSVRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPFEQVSDAR-YRSGG 663 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I++ ++ G + + S G L Sbjct: 664 TGLGLAISRELVRLMGSEIHVESHHGTGSAFSFEL 698 >gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis] Length = 1369 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 14/246 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS+FLA+MSHE+RTP+ +LG +E++ G + +EY+ +I S LL +IN Sbjct: 797 RLKSQFLANMSHEIRTPITGVLGMAELLS----GMQLDAEQQEYVENIQSSATSLLTVIN 852 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363 +ILD S++E+GR ++ E SL IV+E MLQ + KN++ I + V Sbjct: 853 DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDIGDGIENDLVVIG 912 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D +RQ++ NLL+N++KFT G V +V +++D+G GI + Sbjct: 913 DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVTAEKETSESIEVRFTVEDSGIGIQDDVRKK 971 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F QG + G GLGL I ++++ G+ + S + G +P + Sbjct: 972 LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNK--P 1029 Query: 480 FIPEDN 485 P + Sbjct: 1030 SGPAEA 1035 >gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1058 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 12/285 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + T + L A + E + T++ AE N AKSRFLA+MSH Sbjct: 466 RWLHWTNRAIFDDRGNLVEYAGVGHDVTERKQTAEALLRTKEEAEAANRAKSRFLANMSH 525 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+G + + M ++ + ++ + + LL L+N+ILD+S++EAG+ Sbjct: 526 EIRTPLNAIIGMTHL----AMHTREDDKRQRFLATVAHAADSLLGLLNDILDISKMEAGQ 581 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L+ +V + L +A EK +++ + P+L + D +RQ++LNLL Sbjct: 582 LSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPALPDCLLGDALRLRQILLNLLG 641 Query: 378 NAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NAVKFT G + + ++ + D G GI ++ + F Q + Sbjct: 642 NAVKFTPA-GTITLEAFAEEAEDADNRVYLHLRVTDTGIGIPAEKLELIFNRFEQADNSY 700 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I+ + A G+ S+ +G ++P R Sbjct: 701 GRQYGGAGLGLSISAQLAALMHGRLWAESRENQGSTFHCLIPFPR 745 >gi|260159588|gb|ACX32464.1| two-component histidine kinase [Fusarium oxysporum f. sp. lycopersici] Length = 1293 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 14/265 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +I+ L + + + R+ AE N S FLA+MSHE+RTP+N I+G +++ Sbjct: 681 ELKRKINQMISNLRDSIQRNTQAREAAELANKTMSEFLANMSHEIRTPMNGIIGMTQL-- 738 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 T + +E + ++ LL +I++ILDLS+IEA R + E +L V Sbjct: 739 --TFDTDLTQYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNA 796 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ K+D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 797 LKTLAVKANEKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIK 855 Query: 395 WTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + G+ ++D G GIA+ ++ + +F Q ++ G GLGL I++ Sbjct: 856 ESMGQNNVRPGEYAVEFVVEDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISK 915 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 ++ GG + S+ +G E Sbjct: 916 RLVNLMGGDLWVNSEHGKGSEFHFT 940 >gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1055 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 5/301 (1%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + H+ L A++ +++ + L A + Sbjct: 579 LWRHLAVPVLEEGRLVAVAGVANKDLPYERADRRQLELFMHGMWEHIARRRAMVSLRRAK 638 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE N +K FLA+MSHELRTPLN +LG +++ GP ++ + Y+ SG Sbjct: 639 DAAEAANRSKDEFLANMSHELRTPLNGVLGMLQLL----DGPDLSDERRGYLRTAVESGH 694 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL +I+++LD+S + AG L + ++R+ M+ A+ + + + D Sbjct: 695 ALLRIIDDLLDISALGAGGSGLRDEPFDPAAVLRQVAEMVDPAARRRGLALGLIADALPL 754 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D +RQV+ NL++N VKFT GG V + G +++D G GI E ++P Sbjct: 755 RVRGDAARLRQVLYNLVANGVKFTHQGG-VDILACPVGGDRLLFTVRDTGIGIPEEKLPV 813 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 V F Q + QG GLGL I + +A GG + S+ G V LP V Sbjct: 814 VCEPFAQVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTMESEEGVGTSVHVCLPLPEVDA 873 Query: 480 F 480 Sbjct: 874 A 874 >gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 728 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 129/261 (49%), Gaps = 18/261 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + R+RAE N AKS FLA+MSHE+RTP+N ++G +E++ + Sbjct: 192 ITETILREKELQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMDTDL----T 247 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I +SG+ LL +IN++LD S+IEA + L E L V E +++LQ A+ Sbjct: 248 EEQNLYANTIRKSGEALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVMLLQPNAR 307 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------- 393 +K +E+ D L D +RQV+ NL+ NAVKFT G V V V Sbjct: 308 DKELELLVDYDMFLPTRFHGDPGRIRQVLTNLIGNAVKFTEK-GHVLVRVVGMPAAAPES 366 Query: 394 --GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + I+++D G GIA + + F Q A +G GLGL I++ ++A Sbjct: 367 PEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGLGLAISRKLIAM 426 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 G I S+ G L Sbjct: 427 MQGDIWIGSEEGRGSTFGISL 447 >gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 699 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +S +++AE AK FLA MSHE+RTPL A+LG +++++ + Sbjct: 189 RDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDS- 247 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ +G++LL+LIN ILDLS+IEAGR E+ L +VR+ ++ LR Sbjct: 248 ---QQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLR 304 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A+++ +E + V D +RQV++NL+ NA+KFT GRV V + Sbjct: 305 ARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPP 363 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G ++ D G GI + + F Q ++ G GLGL I++ ++ GGQ Sbjct: 364 YPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQ 423 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S+ G +P + N I + + ++ Sbjct: 424 ISLVSREGGGSTFTMEIPLLKCENSITKPSRAAS 457 >gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1268 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 91/274 (33%), Positives = 151/274 (55%), Gaps = 3/274 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + Y + L A+ + E + + + AE+ NLAKS FL+SMSH Sbjct: 833 FWANVVYTAIRDQSGNLRGYAKLTRDLTERKRLDQELERAKSVAEKANLAKSDFLSSMSH 892 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAILGF++++E + P + + + + I ++G +LL LINEILDL+ IE+G+ Sbjct: 893 ELRTPLNAILGFAQLLEAGSPPPTDAQKIR--LHQIIKAGWYLLELINEILDLALIESGK 950 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 LS ++LID++ EC M++ +AQ+++I++ AD ++QV++NLLSN Sbjct: 951 LSLSREPVALIDVIIECQAMIEPQAQQRDIKLTFIPFDETWFASADRTRVKQVLINLLSN 1010 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+K+ G V V ++ IS+KD G G+A ++ + F + S ++G Sbjct: 1011 AIKYNREHGTVEVKCIESTPERLRISVKDTGEGLAPEKLAQLFQPFNRLGQ-ESSGKEGT 1069 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G+GL + + ++ GG + S + G E L Sbjct: 1070 GIGLVVTKQLVELMGGAIGVESTVGVGSEFWIDL 1103 >gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 167/395 (42%), Gaps = 25/395 (6%) Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 +++ + G ++ L +++ +LT T IA+ ++ ++ M + Sbjct: 554 NIVVLPVLFEGQVTAVIELASFRSFSEIHLTFLDQLTESIAIVLNTIAASMRTEQLLKQS 613 Query: 168 FPVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + L + + + A L + L ++N ++ Sbjct: 614 QSLAEELQSQQTELTDTNKRLEQQANSLQASEERLKSQQEELQQTNEQLQEKARLLSIQN 673 Query: 226 AELEVAKSLSDETRKRAEEENLA-------KSRFLASMSHELRTPLNAILGFSEVIELET 278 E+E ++ R+ EE+ KS FLA+MSHELRTPLN++L + ++ Sbjct: 674 KEVERKNREIEQARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNA 733 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L+ E EY IH +G LL LIN+ILDL++IE+G + + D+ + + Sbjct: 734 EGNLS-EKQVEYGRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERI 792 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 + A ++ +E + +L + D K ++QV+ NLLSNA KFTA+ G V + V Sbjct: 793 FRQVANDRGLEFAVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTAL-GSVTLRVEMAT 851 Query: 396 -----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + S+ D G GIA + + +F Q + G GLGL I Sbjct: 852 GGWDPASESLNRASGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSI 911 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 ++ I GG+ + S+ G LP L Sbjct: 912 SREIARLLGGEIQLESEPGRGSTFTLFLPLDAPLP 946 >gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 845 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 8/287 (2%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 T F ++ + K N + D E++ ++L D A++ N AK F Sbjct: 269 TLTGEDRFMHLHLYPVKENAGTIRYVVSLSDRTHEVKTRQTLKD-ALASAQQANTAKRDF 327 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 L+ MSHE+RTP+NAI+G + + N+ + + I S +HL++L+N++LD+S Sbjct: 328 LSRMSHEIRTPMNAIIGMATIAAAHI---QNHGRVADCLHKISFSSKHLMSLLNDVLDMS 384 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQV 371 +IE+G+ + L +++ + ++ + + + + + D + Q+ Sbjct: 385 KIESGKLAVHHEEFDLPNLIDSIVSIMYPQTESQGQHFSVALSGIEEEKLVGDPLRINQI 444 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +LNLLSNA KFT GG + + V G ++ D G G++E + F Q Sbjct: 445 LLNLLSNARKFTPEGGSIKLEVSQKRKNGGVLMRFTVSDTGIGLSEAFQKRLFKPFEQAD 504 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +I G GLGL I +++ G +RSK EG LP Sbjct: 505 SSISQKYGGTGLGLAITHNLVTLMNGTIGVRSKEHEGSCFTVELPLA 551 >gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000] Length = 609 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 733 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 13/258 (5%) Query: 224 LIAELEVAKSL---SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 ++ + L D + KR E K FLA+MSHE+RTPLN+ILGF+ +++ Sbjct: 211 ILGQFRQQNKLILKLDASEKRLTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRRDKD 270 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P + E +I I ++G++L+ +IN+ILDLS+IEAG + ++ S+ ++ + + Sbjct: 271 PDSAE----FIESIQKAGENLMAIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFK 326 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 R EK +++ + ++ ++ D + Q+++NL+ NA+KF+ GG + V V Sbjct: 327 ERVNEKGLQLNCSVASNVPDTLIGDATRLTQILVNLIGNALKFS-DGGMIEVLVSRVWAD 385 Query: 400 GQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I +KD G GI+ ++ + F Q +I G GLGL I ++++ GG Sbjct: 386 GSNIQLGVKVKDTGIGISNEKLDKIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGN 445 Query: 456 FLIRSKLREGVEVIAILP 473 + S +G E +P Sbjct: 446 IEVHSIPGKGSEFAFYIP 463 >gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470] Length = 609 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 1035 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1402 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A+ N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 658 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 713 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 714 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 773 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 774 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 832 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG+ + Sbjct: 833 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 892 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488 S G E ++ + + + S Sbjct: 893 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 922 >gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 1897 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 92/355 (25%), Positives = 155/355 (43%), Gaps = 24/355 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +S+S+L +F + FL + + + +I + + L A L Sbjct: 1123 VISLSSLHDFEPAHLTFLEQLTMGIGIVLNSIEATMQTEELLTQSQELA-GELQEQQKAL 1181 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260 K+N ++ + + E+E D+ R+ EE + KS FLA+MSHEL Sbjct: 1182 QKTNEELAQKAQQLAERNVEVERKNEEIDQARRAVEEKAAELALTSRYKSEFLANMSHEL 1241 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN+IL + + L+ E E+ IH +G LLNLI++ILDLS+IE+G Sbjct: 1242 RTPLNSILILGQQLSDNPDRNLS-ERQVEFARTIHGAGTDLLNLISDILDLSKIESGTVS 1300 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 ++ +S ++ + A+ +++ D L ++ D K ++QV+ NLLSNA Sbjct: 1301 VNAEDVSFNAVLEAIARPFRHEAERRDLAFEMSFDADLGRTLFTDSKRLQQVLKNLLSNA 1360 Query: 380 VKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 KFT G V ++V + + D+G GI + + +F Q Sbjct: 1361 FKFTRE-GYVRLSVKPAATKWGPDHPTLAEAQTVVAFEVDDSGIGIPLDKQKIIFEAFQQ 1419 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + G GLGL I++ + GG+ +RS+ G +P + Sbjct: 1420 ADASTSRKYGGTGLGLAISRELAHLLGGEIQLRSEPGRGSTFTLYIPLRYAAPSL 1474 >gi|309888|gb|AAA03213.1| virulence regulator protein [Ralstonia solanacearum] Length = 638 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP- 70 + + P + LGL + ++ D L I VL V + ++ + Sbjct: 29 LTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSDSR 88 Query: 71 -IFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + G+ W Sbjct: 89 LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 148 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++A Sbjct: 149 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 206 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L +F ++ + V+ + + E L A+ DE ++RA Sbjct: 207 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 259 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +ET + + Q + L Sbjct: 260 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLPSGAQTIDLLF 315 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 316 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 375 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 376 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 432 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 433 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEVKAPLA 492 Query: 485 NHESTQYK 492 ++ K Sbjct: 493 AQPRSEQK 500 >gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] Length = 1430 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 11/261 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 +A+ D++A K + RAEE N AKS FL++MSH++RTP+NAI+G + + Sbjct: 1031 RADVTDMLAAERRTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMTALAMAH 1090 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + E + + I S +HLL+LIN+ILD+S+IE+ + L+ IS+ +++ + Sbjct: 1091 LG---DQERVTDCLQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLSA 1147 Query: 338 MLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ +A+ + + + + D + Q+++N+LSNAVK+T GG V Sbjct: 1148 IMSSQARSAGLTFSIQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAEEI 1207 Query: 397 SGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G+ ++ D G G+ E + V F + + +G GLGL I + ++ Sbjct: 1208 PPVGRDCARYRFTVSDTGVGMTEEFLNHVFEPFTR--SRQTTRVEGTGLGLSITKGLVNL 1265 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG + S + +G L Sbjct: 1266 MGGAISVESVVHQGTVFQVEL 1286 >gi|32400386|dbj|BAC78682.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|32400382|dbj|BAC78680.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 684 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 12/267 (4%) Query: 217 CQAEKDDLIAELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + AE A+ + ++ R+ AE N K FLA +SHELRTPL ++LG+S+++ Sbjct: 261 LEDITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILR 320 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + +++ + I R+ + LI +ILD+SRI G+ L+ SA++LI ++ Sbjct: 321 SKKL---DDKATSRALEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAA 377 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + ++ A+ K I++ +D S+ SV+ D ++Q++ NLL+NA+KFT GGRV V + Sbjct: 378 LEAVRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSI 437 Query: 396 TSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 G Q I + D G GI+ +P V F Q + G+GLGL I + + Sbjct: 438 VYGEEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHL 497 Query: 449 MANHGGQFLIRSK-LREGVEVIAILPN 474 + H G +S +G LP Sbjct: 498 VELHKGTIFAQSPGSGQGATFTVRLPL 524 >gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19] Length = 1140 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSD--ETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + E E EVA +D R A AKS FLA+MSHE+RTP+N ++ Sbjct: 217 AIRTRDARIEAHVKGLEGEVAARTADYVAARDEAVAATAAKSDFLATMSHEIRTPMNGVM 276 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 +E++ E++ + + I +SG+ LL +IN+ILD S+IEAG+ E+ + + + Sbjct: 277 VMAELLAAESL----PAKARRHAQTIAKSGRSLLAVINDILDFSKIEAGKLEVETTEVDI 332 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +D+ + I + Q +A+EK +E+ P + AD + QV+ NL+SNA+KFT G Sbjct: 333 LDLCDDIITLFQAKAREKGLELAVSAHPDAPRIVPADPVRLGQVLSNLISNALKFTDQ-G 391 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V V + GR +S++D G GIA ++P + +F Q G GLGL IA+ Sbjct: 392 LVAVAIEPGPGRSWKLSVRDTGIGIAADKLPKIFAAFSQEDQTTTRRFGGTGLGLTIARR 451 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 ++ GG+ + S+ G + ++P Sbjct: 452 LVEAMGGEVSVTSQQGRGTRFLVVMPA 478 >gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium SM4/1] Length = 596 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 8/248 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++AE+ N AKS FL+ MSHE+RTP+N I+G +I ++ +G ++ ++ I Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ S +HLL LIN++LD+S+IE+GR E+ + ++ +A++K + Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 + ++ D + Q+++NLLSNA+KFT GG + + + + Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKFEVS 519 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E + F Q I G GLGL I++ G+ + S++ +G Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579 Query: 467 EVIAILPN 474 +P Sbjct: 580 TFTLTMPL 587 >gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1959 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 9/246 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 R RAE N AKS FLA+MSHE+RTP+NAI+G + ++ ++ + +E Sbjct: 1212 QLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDSTDTV----QQE 1267 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +G + + HLL++IN+ILDLS+IE+G+ EL ++ + ++ ++ RA+ K +E Sbjct: 1268 RLGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGERARAKGLE 1327 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISI 405 + +S+ D + Q ++NLLSNAVKFT G V V + Sbjct: 1328 LVLDSHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQ-GSVVVRAEIVHEDPDGLTVRFEV 1386 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G+A +I + +F Q + G GLGL I + + GG+ + S G Sbjct: 1387 DDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGVSSAPGVG 1446 Query: 466 VEVIAI 471 Sbjct: 1447 SRFWFT 1452 >gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22] gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22] gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B] gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A] Length = 609 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|32400380|dbj|BAC78679.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|329954548|ref|ZP_08295639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328527516|gb|EGF54513.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 637 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 L ELEV+++ E + RAEE N KS FLA+MSHE+RTPLNAI+GFS+V+ Sbjct: 386 FFYRTKRLKDELEVSEAALREAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLS- 444 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G + + Y I + LL LIN+ILD+SR+EA R L+ ++ + + Sbjct: 445 --AGDTAIDDQRGYFEIIKANSDLLLRLINDILDVSRLEADRVTLTLEKCDVVQVCMQVT 502 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + +A+ + I + + D + ++QV++NLLSNA KFT G + + + Sbjct: 503 ASV-TQARRSSNRIVFESAADSLEIRTDIQRLQQVVINLLSNADKFT-ENGTITLKLEPD 560 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 R S+ D G GI + V F + QG GLGL I + I+ GG+ Sbjct: 561 MRNRTALFSVSDTGCGIPPEKRKRVFERFEKL----NEYAQGTGLGLSICKLIVEKWGGR 616 Query: 456 FLIRSKLREGVEVIAILPN 474 I S+ G + P Sbjct: 617 IWIDSQYTRGARFVFTHPL 635 >gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1] gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1] Length = 908 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 127/245 (51%), Gaps = 9/245 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ + A+ N AK+ FL+SMSH++RTP+NAI+G + + + P E + + I Sbjct: 385 LEDAYQIAKIANSAKTDFLSSMSHDIRTPMNAIVGMASIAQAHINFP---EKVSDCLHKI 441 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQK 353 S +HLL+LINE+LD+S+IE+G+ +L ++L +++ + M + EK + Sbjct: 442 KISSRHLLSLINEVLDMSKIESGKIDLMLEDVNLPELIDDVSDMCRALIDEKQQDFSIVI 501 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDN 408 V AD ++Q+ +NL+SNAVK+T GG++ + + DN Sbjct: 502 GRIKHEKVVADGDRLKQIFMNLISNAVKYTPRGGQISLVINELDSLILDKGRFEFKFYDN 561 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++E +P + F + + QG GLG+ I ++I+ G + S+L +G Sbjct: 562 GIGMSEDFLPHIFEPFSRAEDTRINKIQGTGLGMAITENIVNMMNGTIEVESQLGKGTIF 621 Query: 469 IAILP 473 +P Sbjct: 622 TVSIP 626 >gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 962 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + LSF T + ++ ++ A++ + E + + + ++ AE + KS Sbjct: 513 GRVLGTLSFGTRTRKAFSEDDLSLMKAVADQVSIAMERKTTEEKLQQAKQAAEAASRTKS 572 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +FLA+MSHELRTP+ +LG ++ T + +YI +RSG+ LL ++N+ILD Sbjct: 573 QFLANMSHELRTPMTGVLGMLDLALQST----SELQQSDYIRTAYRSGRSLLQILNDILD 628 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 LS++EAG++ L + SL V E + A+ K IE+ + L V D+ +R Sbjct: 629 LSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQDLPWHVVGDQVRLR 688 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 QV+ NL+ NAVKFT GRV V V + + D G GI + + + +F Sbjct: 689 QVLTNLVGNAVKFTER-GRVTVQVEVADKTAEAELLLRFRVSDTGIGIPQDKRHLLFQAF 747 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q + G GLGL I++ I+ GG+ S G Sbjct: 748 SQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVGSTFTFT 794 >gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1306 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 11/271 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 VK +S D + ++ AE+ N AKS FLA MSHE+RTP+N Sbjct: 604 WIAPVVKSMSSMLYSDRQAQLNQEVNEALRRAKEDAEQANDAKSNFLAMMSHEIRTPING 663 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G SEV+ + + Y I S LL++IN++LDLS+IEAG+ + Sbjct: 664 IIGMSEVLSHTELAF----EQRRYNDTITTSANALLDIINDVLDLSKIEAGKMTVRHETF 719 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + ++V ++ R + N+ DP L + +D +RQ+++NL NA KFT Sbjct: 720 CIHELVENVTNIVAPRVKS-NVTFTTYTDPLLPHQITSDFSKLRQILVNLAGNAAKFTDS 778 Query: 386 GGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V V++ + + + D G GI + ++ +F Q + K QG GLG Sbjct: 779 -GYVDVSITQVSRIENRCEIALKVTDTGIGIEKAQLDKAFENFSQIDNSSKRRYQGTGLG 837 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LPI + G S + +G A Sbjct: 838 LPICRKFTELLNGDIKAESSIGQGSTFSARF 868 >gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 989 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + ++ AE N AK +FLA++SHELRTPLN ILG++++++ + Sbjct: 516 ISARKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQR---DARLD 572 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +G I +SGQHLL LIN+ILD +R+ AG+ EL +SL + ++ +RAQ Sbjct: 573 ARQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQ 632 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + P L V DE+ +RQV+LNLL+NAVKFT G V ++V + Sbjct: 633 QKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDR-GEVTLSVSRGAAGRVRF 691 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G G++ + + F Q G GLGL I++ ++ GG+ + S Sbjct: 692 EVRDTGIGVSADRLEAIFQPFEQAGD-HTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAG 750 Query: 464 EGVEVIAIL 472 EG L Sbjct: 751 EGSVFGFEL 759 >gi|262394675|ref|YP_003286529.1| sensor histidine kinase [Vibrio sp. Ex25] gi|262338269|gb|ACY52064.1| sensor histidine kinase [Vibrio sp. Ex25] Length = 806 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 274 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSEDEIGQLIDKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDDQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E + + I+ + Q EK + Sbjct: 390 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLR 449 Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 P+ D+ +RQV+ NLL+NAVKFT G V V + +G +++ Sbjct: 450 FGVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELTEKSSKAGTKLILAV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG +++S+ G Sbjct: 509 KDTGIGISQEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVG 568 Query: 466 VEVIAIL 472 + Sbjct: 569 TTFTVEI 575 >gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 739 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 17/249 (6%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+N ++G +E++ + +E + Y I SG+ LL +I Sbjct: 213 NRAKSAFLANMSHEIRTPMNGVVGMAELLCDTAL----DEEQQLYASTIKNSGEALLVII 268 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEA + L L + E +++Q ++K + + D L +++ D Sbjct: 269 NDVLDYSKIEAEKMMLHPEPFDLERCIHEVAMLMQPIVRDKGLTLLVDYDLFLPTLFVGD 328 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPT 419 +RQV+ NLL NAVKFT G + + V +++I+D G GI ++ Sbjct: 329 PGRVRQVLTNLLGNAVKFTTK-GHILIRVTGVPDPATGRCAIHVAIEDTGIGIPREKLAH 387 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILP---- 473 + F Q G GLGL I+Q ++ GG + S+ G LP Sbjct: 388 IFGEFNQVENERNRQFDGTGLGLAISQRLIQMMGGTVWVESEEGRGSCFGFRVTLPMSEE 447 Query: 474 NTRVLNFIP 482 VL +P Sbjct: 448 AQPVLPNLP 456 >gi|32400384|dbj|BAC78681.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1390 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 21/274 (7%) Query: 223 DLIAELEVAKSLSDETRKRAEEEN---------LAKSRFLASMSHELRTPLNAILGFSEV 273 D+ E A+ L +E+R++ + KS+FLA+MSHE+RTP+ ++G +E+ Sbjct: 756 DVSELKEKAEGLKEESREKKQAMANEAAAKEANRLKSQFLANMSHEIRTPITGVIGMAEL 815 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + EY+ +I RS LL +IN+ILD S++E+GR ++ E SL IV Sbjct: 816 LRDMEL----DAEQTEYVENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVIVT 871 Query: 334 ECIIMLQLRAQEKNIEIFQKID---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + ML A+ KN++ I + V D +RQ+I NLL+N++KFT G V Sbjct: 872 DVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNLLTNSIKFTNQ-GYVK 930 Query: 391 VTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 +V ++D+G GI E + F QG + G GLGL I + Sbjct: 931 FSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDASTARKFGGTGLGLTICK 990 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +++ G + S L G +P ++ Sbjct: 991 NLLELMNGNMTLESTLGNGTVATFWVPFSKPQQQ 1024 >gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612] gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612] Length = 795 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 9/260 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E ++ +LE + E AE+ + AKS FL+SMSH++RTP+NAI+G +E+ + Sbjct: 258 TELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMTEIARIHL 317 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P E + I S QHLL LIN++LD+S IE+G LS SA SL D + + + Sbjct: 318 DDPGRVEN---CLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFMENIVAI 374 Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394 +Q A EK +F + ++AD ++Q+ +N+LSNAVKFT G + +T+ Sbjct: 375 IQPAAAEKRQHLFIRTFGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITLTLEEFP 434 Query: 395 --WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + D G G+ + + + SF + + +G GLG+ I + I+ Sbjct: 435 AAREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITKRIVDMM 494 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GG+ +RS +G + L Sbjct: 495 GGRITVRSAEGKGSTFVVYL 514 >gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 418 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 85/329 (25%), Positives = 156/329 (47%), Gaps = 9/329 (2%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + N + + + P ++ + + S I + + L + + + + Sbjct: 87 IQNMGVQAPLIVLTPPENKKITQEFMESGAWDYIIESMISPDILFKTLKNSMRIHEVEKE 146 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSRFLASMSHELRTPLNA 266 + + + L+ + + + +E + +S+FLA++SHELRTP+NA Sbjct: 147 LKVTNQQLRENNKILKQKNKELKQQQDQIHLKNLQLQEASRRQSQFLATISHELRTPMNA 206 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GFS+++ + PL + + I I + Q+LL LINE+LD S++E G+ +L+ Sbjct: 207 IMGFSQLLLRQYPDPLTD-QQIDIIQRIFNNSQNLLTLINEVLDFSKLEIGQMDLNIGKF 265 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L +VR + L KN+ + I + + V D+ ++++++NLLSNA+KFT Sbjct: 266 DLDILVRFTVEELSSLTLNKNLSLNVDIHLANNQVINDKNFLKRILINLLSNAIKFTPA- 324 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G + V V + I+I+D G GIA + T+ T F Q + G GLGL I Sbjct: 325 GEIWVKVWEMNPERIAITIEDTGVGIAPEHLKTIFTPFHQVDQTLTRQHLGTGLGLAIVY 384 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNT 475 S++ G+ + S+L +G +P Sbjct: 385 SLVKMMQGEIHVTSQLEQGSVFRVEIPRR 413 >gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 876 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 11/263 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 +DL ++ +RA+ + KS FLAS+SHELRTPLNAI+GFS V+ +T P Sbjct: 602 NDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTDQP 661 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L T +E I I+R+G+ LL+LINE+LDL+RIEAG L S ++L +I E +Q Sbjct: 662 LT-PTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITSEVCDTVQT 720 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 + + + + + +L + AD +RQ++ NLLSNA+KFT G + V+ Sbjct: 721 LLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTER-GTITVSARVHDEVNE 779 Query: 398 ----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 GR +S+ D G GI + F Q +S G GLGL I + ++ G Sbjct: 780 DGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQIHG-RRSRLSGTGLGLAITRKLVLAQG 838 Query: 454 GQFLIRSKLREGVEVIAILPNTR 476 G+ + S G +P + Sbjct: 839 GRIWVDSTPGIGSTFTFTIPVAQ 861 >gi|288961674|ref|YP_003451984.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288913954|dbj|BAI75440.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1960 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 160/377 (42%), Gaps = 25/377 (6%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ L G ++ + + + T I + ++ ++ M + + L +Q + Sbjct: 1112 AVIELASFGRFSETHQSFLEQLTESIGIVLNTIAANMRTEGLLKQSQRLTSELQSQQEEL 1171 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + A L + L +N + + + E+E + Sbjct: 1172 TATNERLEQQAASLRKSEELLKAQQEKLTTTNEALEEKAEQLEKQNIEVERKNREVVFAK 1231 Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 EE + KS+FLA+MSHELRTPLN++L S+++ L++ E+ Sbjct: 1232 AALEEKAEQLALTSKYKSQFLANMSHELRTPLNSLLILSKLLADNPDTNLSD-RQVEFAR 1290 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IH +G LL LIN+ILDLS+IE+G L + L D+ AQEK + Sbjct: 1291 TIHSAGSDLLGLINDILDLSKIESGTVTLEIGEVVLGDLRNHVERTFSQVAQEKKLAFTI 1350 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----------- 400 ++D +L + + DEK + QV+ NLLSNA KFT GG + V +G Sbjct: 1351 EMDAALPAGIQTDEKRLSQVLNNLLSNAFKFTETGG-ITFRVAPATGGWSAAHPTLDAAA 1409 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GI E + + +F Q G GLGL I++ I GG+ + Sbjct: 1410 SVLAFTVIDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGEIRV 1469 Query: 459 RSKLREGVEVIAILPNT 475 S +G +P + Sbjct: 1470 ASTPGKGSVFTLFVPRS 1486 >gi|313632600|gb|EFR99590.1| sensor histidine kinase ResE [Listeria seeligeri FSL N1-067] Length = 596 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 143/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++ + + + A+E +E+ +++ D + QV++NL+ NA++ T Sbjct: 444 APLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRLEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 KGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ H G+ ++S+L +G + I LP + Sbjct: 564 IVKNIVEAHDGKISVKSELGKGSDFIITLPLEK 596 >gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] Length = 1012 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 131/254 (51%), Gaps = 8/254 (3%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++ AE+ N AKS FL+ +SHELRTPLN+ILG+++++ E E Sbjct: 628 SNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQIL-EEQGEKDLTEKQLNR 686 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I I ++G HLL LINE LDLS+IE+G ++ +S+ + + + + +++ A++K+ + Sbjct: 687 IRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSIL 746 Query: 351 FQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + V DE +Q++LNLL+NA+K++ + + T I I+D G Sbjct: 747 YTRFHAYQEVFVEVDELRFQQILLNLLTNAIKYSPAYRDITIYTEITQ-HHVTILIEDRG 805 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E+ + F + + K G G+GL + + ++ G +RS+ +G Sbjct: 806 FGIPASELNRIFEPFYRINRLEKD---GTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFW 862 Query: 470 AILPNTRVLNFIPE 483 P V +P+ Sbjct: 863 VRFPL--VHPPVPK 874 >gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 778 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 145/264 (54%), Gaps = 12/264 (4%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 ++ I ++ ++ + ++ AE+ LAKS FL++MSHE+RTPLN ++GF+++ Sbjct: 104 LIELVEFLKRQIERRKMIENELRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDL 163 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + +ET Y+ +++S LL++IN+ILD S+IEAG+ EL L+ I R Sbjct: 164 LLKTK----TDETQHHYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGR 219 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + M++L A +K +E+ IDPS++ VWAD+ +RQ+++NLLSNAVKFT G + + Sbjct: 220 QVADMIKLPAHQKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQ-GEIELR 278 Query: 393 VGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + +++D G GIAE + +F Q + G GLGL I+ Sbjct: 279 IERIHDQPADGLTSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISN 338 Query: 447 SIMANHGGQFLIRSKLREGVEVIA 470 ++ G + + S+L +G Sbjct: 339 KLLGLMGSRLQLTSELGKGSTFFF 362 >gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Dialister microaerophilus UPII 345-E] gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Dialister microaerophilus UPII 345-E] Length = 650 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 242 AEE-ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + F A++SHEL+TPL I GF+E+I + E K + IH+ + Sbjct: 339 AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDIKNFSNKIHQESRR 396 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 +L+LI+ I+ LS+IE +S +S+ +++ ++ +A +K+++I I+P Sbjct: 397 MLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEP--VY 454 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++ + + ++ +NLL NAVK+ GG + V + + I+I D G GI E + V Sbjct: 455 MYGNAALLSELFMNLLDNAVKYNVKGGNITVHIKRLKEKLMKITISDTGVGIPEEKQNRV 514 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + + A G GLGL I + I+ H G+ I S +G VI LP Sbjct: 515 FERFFRAEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVIVELPCLSDEEI 574 Query: 481 IPEDNHEST 489 + E+ E T Sbjct: 575 LRENATEIT 583 >gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 807 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 558 ITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTET----EDM 613 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + K+Y+ + + + LL LI++ILDLS++E+G +E +S + + E I L+++ Sbjct: 614 KDRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + VWAD+ + QVI N ++NA+KFT G + + + Sbjct: 674 A-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFS-GSITLGYYRQTDGYLRFY 731 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI +I TV F + S G GLGL I +S++ GG + S+ E Sbjct: 732 VRDIGMGIPRNKIKTVFDRFVKL----NSFVHGTGLGLSICKSLVEQMGGTIGVESEEGE 787 Query: 465 GVEVIAILP 473 G P Sbjct: 788 GSCFWFTYP 796 >gi|171060373|ref|YP_001792722.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777818|gb|ACB35957.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1021 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 154/451 (34%), Gaps = 21/451 (4%) Query: 36 EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN 95 + L + + P V AA+ + Sbjct: 68 RLAALSRGVRQNAIVTAVQVRSDNGALLVSDGELPDAAALPAGPGGVSAAHAWQTVPLAR 127 Query: 96 SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155 + + + G ++ T + + S + L + Sbjct: 128 AVSTRPA-----RLIGHLHLYSGPQ-----VLWDRTKYGLLVVLLNSIVVTTGLWLMFSW 177 Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 + ++ VA ++ + + + + + Sbjct: 178 TVRHRLSKEVTRMARTVAGWRYRKDETTPVEAIAYPYPDELGALVDALNDSQARLHDSMR 237 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 A +L + AE + AK FLA+MSHE+RTP+NAILG + Sbjct: 238 RLDALNQNLEHSVAERTVELQRATDVAEAASRAKGEFLANMSHEIRTPINAILGMLYLAL 297 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P + + Y+G + LL +IN+ILDLS+IEAG+ ++ L ++ Sbjct: 298 KSDLAP----SVRNYLGKAQNAAHALLGVINDILDLSKIEAGKLDIERVEFRLDGVLEML 353 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + +A K IE + DP++ + D + QV+LNL NAVKFT G V + Sbjct: 354 TDAVGHQAAHKGIEFLIRYDPAIPPALIGDPLRLGQVLLNLCGNAVKFT-EHGEVELAFR 412 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 R ++++D G GIA + F Q + G GLGL I++ ++ Sbjct: 413 ALPSRPGEITVQVNVRDTGIGIAPEVQHRLFEKFSQADQSTTRRFGGTGLGLAISKQLVE 472 Query: 451 NHGGQFLIRSK-LREGVEVIAILPNTRVLNF 480 GG+ I G + LP Sbjct: 473 LMGGRIWIEDTLPGRGTTMCFTLPLRIAAES 503 >gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] Length = 1188 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + + + E ++ L D R RAEE AKSRFLA MSHELRTP+ +L Sbjct: 632 RTENDLRAARDELEEQAQSLRDLAEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLL 691 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G E+ + ++ + Y+ + S + LL L+N+ILD S++EAG+ +L E + Sbjct: 692 GMIELASRTEL----SKEQQGYVRIMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAP 747 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 I+ + + Q +A K + + + PS+ V D ++Q++ NL+SNA+KFT G Sbjct: 748 EQIIGDVFGLFQAQASAKGLVLEADLRPSVPAWVRGDPLRVKQILSNLISNAIKFTTK-G 806 Query: 388 RVHVTVGWTSG--RGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 R+ V +G T G + + D G GIA G + + +F QG + G GLGL Sbjct: 807 RITVRLGATEGPSGLVRLQGEVIDTGQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLA 866 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470 I++ + GG + S+L G Sbjct: 867 ISRRLAEGMGGSITVESELGRGSVFRF 893 >gi|156036016|ref|XP_001586119.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980] gi|154698102|gb|EDN97840.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1309 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 694 ELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTL 753 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 754 DTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNA 809 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V +T+ Sbjct: 810 LKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSLTIQ 868 Query: 395 WTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + D G GI ++ + +F Q ++ G GLGL I++ Sbjct: 869 KAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKR 928 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ G ++S+ +G Sbjct: 929 LVNLMRGDVWVKSQYGKGSSFYFT 952 >gi|254229957|ref|ZP_04923359.1| sensor histidine kinase [Vibrio sp. Ex25] gi|151937526|gb|EDN56382.1| sensor histidine kinase [Vibrio sp. Ex25] Length = 811 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 279 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSEDEIGQLIDKFN 338 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 339 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDDQRK 394 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E + + I+ + Q EK + Sbjct: 395 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLR 454 Query: 350 I-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 P+ D+ +RQV+ NLL+NAVKFT G V V + +G +++ Sbjct: 455 FGVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELTEKSSKAGTKLILAV 513 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG +++S+ G Sbjct: 514 KDTGIGISQEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVG 573 Query: 466 VEVIAIL 472 + Sbjct: 574 TTFTVEI 580 >gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 575 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + T +++ I + L+ L Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAT--KFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + E + + ++V E I +L+++A++KNI++ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVKVQEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV S I +KD G GI E EI + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSDSTVTIKVKDTGIGIPEKEIERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ + S+ G E +P + + Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573 >gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 683 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 6/257 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +E+ A R+ AE + K FLA++SHELRTPLNA+LG+++++ + Sbjct: 274 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 333 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + +K I I RS + ++LI+++LD+S I +G+ L + L D++ Sbjct: 334 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARET 390 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ A++KNI I + P + + D ++QV NLL+NAVKFT GG + ++V + Sbjct: 391 IEPMARQKNITIDTEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPE 449 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI +P + F Q ++ G+GLGL IA+ ++ H G+ Sbjct: 450 GVVA-TVRDTGIGIEPAFLPHIFDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRITA 508 Query: 459 RSK-LREGVEVIAILPN 474 S G + LP Sbjct: 509 ASSGADRGTTMAVSLPL 525 >gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 1205 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G S + + ++ + YI + S LL LI Sbjct: 478 NKAKSDFLANMSHEIRTPMNAIIGMSYLALKTDL----SKAQRNYIQKVKLSADSLLGLI 533 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ ++ L +++ ++ LRA E+ +E+ ID + + + D Sbjct: 534 NDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGD 593 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 + Q+++NL +NAVKFT G + V++ G S+ D+G G+ + + Sbjct: 594 PLRLGQILINLANNAVKFTEQ-GEIKVSIALEKKDGNDITLKFSVTDSGIGMTPEQCNKL 652 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q + G GLGL I++ + GG + S+ +G Sbjct: 653 FNKFTQADSSTTRKYGGTGLGLAISKELCQLMGGDIGVTSEQGKGSTFSFT 703 >gi|90579036|ref|ZP_01234846.1| Hypothetical sensor protein TorS [Vibrio angustum S14] gi|90439869|gb|EAS65050.1| Hypothetical sensor protein TorS [Vibrio angustum S14] Length = 971 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 20/298 (6%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIA----ELEVAKSLSDE-------TRKRAEEENLAKS 250 + K+ ++ +A + L+A ELE +E R AE+ N AKS Sbjct: 412 RLAQAESKARQELQEHKASLERLVAKRTGELEKINRRLNEEVHNHYKARDEAEKANRAKS 471 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N +LG + ++ + K Y+ I+RSG+ LL+++N+ILD Sbjct: 472 SFLATMSHEIRTPMNGVLGTASLLADTQLTS----QQKRYLDVINRSGETLLDILNDILD 527 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 S+IEAG ++ S S++ +V + ML+ RA K I + I P + +W DE +R Sbjct: 528 YSKIEAGHLDIRPSNFSVVRMVTDVSSMLEGRALAKRIGLECHISPQVEGMWFGDESRIR 587 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 QV++NL+ NA+KFT G+V + V S+KD G GI + E + ++F Q Sbjct: 588 QVLVNLVGNAIKFTDT-GKVSIFVEPHPDMPDELLFSVKDTGIGIDQEEQNILFSAFQQA 646 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 KS +G GLGL I++ I+A G+ + S + EG LP + D+ Sbjct: 647 EAGRKS-IEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLEHGEGSLEPDD 703 >gi|94313777|ref|YP_586986.1| putative two-component hybrid histidine kinase, periplasmic sensor [Cupriavidus metallidurans CH34] gi|93357629|gb|ABF11717.1| putative two-component hybrid histidine kinase, periplasmic sensor [Cupriavidus metallidurans CH34] Length = 591 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 82/460 (17%), Positives = 174/460 (37%), Gaps = 15/460 (3%) Query: 26 EYPSKMDFDR-EIITLHVESLFRVSPILPLF----VLLVANIGTWFTQNPIFPMWSLITL 80 +D ++ +E + + I L +++A T +P W+ + Sbjct: 2 WSSVLPHYDEPRLLAAQMELIDQSFGIAMLGCSLAAIILAVGLTVTGGHPGAMPWAAAMV 61 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 + A G+ + + + + V + IG W L+ + +P + Sbjct: 62 VLCAIAHF-GRLAVPDRLTEARAGRYARAMTVMLVLIGSLWGLVAWLYLDIRSPAVVICV 120 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 S ++ + A+ + LP F P ++ + +++ + + + L Sbjct: 121 LSLIAGMSAAALAIFSACLP-VAIGFFIPAILPVWIVFLLTHDIAYLPMFFGTPLYLVVL 179 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + ++ + E +LI++L + + + + AE N AKS FLAS SH+L Sbjct: 180 LIFARNYSRVACHSIALRFENVELISQLRDQTARAGQALREAENANRAKSVFLASASHDL 239 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 R PL+A+ F + + ++ + I S ++N +LD S++EAG Sbjct: 240 RQPLHALGLFLVSLGRTPLDAH----QRQLLDHIEASSGAAREMLNTLLDFSKLEAGVIT 295 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 L ++ + +A + + + + ++++ D + ++ NL++NA+ Sbjct: 296 ARPRPFRLQPMLHKLENEFAPQANARG--LVYRTRDTTATLFGDPALVELILRNLIANAI 353 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 ++T GG V + I + D G GI + + F Q + +G+GL Sbjct: 354 RYTHTGG-VLIACRPRRFH-ASIEVWDTGIGIPIAQHREIFREFHQLGNPERDQRKGLGL 411 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GL I + + + S G LP Sbjct: 412 GLAIVDGLARTMQTRVTLDSIPERGSVFRLQLPLAWAAPE 451 >gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] Length = 1313 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 7/238 (2%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + R++ + AKS FL+ MSHE+RTP+NAI+G + + E + KEY+ I S Sbjct: 930 KSRSDSASKAKSDFLSRMSHEIRTPMNAIIGMTNIAMEENGLKNST---KEYLEKISTSS 986 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++LL++IN+ILD+SRIE+G+ +LS S SL +++ E +++ +A++K + K + + Sbjct: 987 EYLLSIINDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVND 1046 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GRGQYISIKDNGPGIAE 414 ++ D + Q+++NLL NA+KFT G + + V +KD+G GI+ Sbjct: 1047 DVLYGDYMRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISS 1106 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 V +F Q G GLGL I +++ G + S L +G L Sbjct: 1107 ENKERVFHAFEQAEDDTSIHYGGTGLGLAICNNLVKLMGSNIELESDLGKGSTFKFTL 1164 >gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS] gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS] Length = 399 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 4/236 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + F++S+SHELRTPL +I G++E + M + E ++ IH+ + Sbjct: 165 RLRNLERTRRDFVSSVSHELRTPLASIKGYTETLLEGAM--NDPENATAFLNIIHQEAEQ 222 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+N++LDLSRIE+G+ S + + + + + + A K + I L + Sbjct: 223 LTALVNDVLDLSRIESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRIELNAPEGLPA 282 Query: 361 VWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V AD V+ NL+ NA+K+ GRV V+ T G I + DNG GI + ++ Sbjct: 283 VLADRSYFDIVVRNLIDNAIKYVDAESGRVRVSAYAT-GDSVSIEVADNGIGIPQADLDR 341 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + I+ H G+ +RS++ G LP Sbjct: 342 IFERFYRVDKARSRELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTVTLPVA 397 >gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] Length = 612 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +SI D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus sp. 7L76] gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141] gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645] Length = 609 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVFDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1824 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 171/402 (42%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + ++L + +++ + F FL+ Sbjct: 1209 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGSVLGVIELASFTPFTQIQRDFLN 1268 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I ++ LA K+ + EK +L Sbjct: 1269 QIAEMIATSVNTISVNTKTELLLAQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1328 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A+ EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1329 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1388 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1389 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1447 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G + + Sbjct: 1448 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1507 Query: 392 TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 S+ D G GIA ++ + +F Q Sbjct: 1508 RPARDDVPQKIREQLLETGSLTDPDAGLIAFSVTDTGIGIASSKMRVIFEAFKQADGTTS 1567 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1568 RKYGGTGLGLSISREIAQLLGGEIYAQSETGRGSTFTLYLPL 1609 >gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 483 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +S +++AE AK FLA MSHE+RTPL A+LG +++++ + Sbjct: 189 RDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSH 248 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ +G++LL+LIN ILDLS+IEAGR E+ L +VR+ ++ LR Sbjct: 249 ----QRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLR 304 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A+++ +E + V D +RQV++NL+ NA+KFT GRV V + Sbjct: 305 ARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPP 363 Query: 398 --GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G ++ D G GI + + F Q ++ G GLGL I++ ++ GGQ Sbjct: 364 YPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQ 423 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + S+ G +P + N I + + ++ Sbjct: 424 ISLVSREGGGSTFTMEIPLLKCENSITKPSRAAS 457 >gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 845 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 5/231 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ ++++SHELRTPL++I GF+E++ + + ++Y+ IH + L N Sbjct: 614 EADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAI---KQQKYLSTIHNETERLSN 670 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ + LD+ R+++G + + L IV + I + + +I++ + ++ Sbjct: 671 LVTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHL-LSVERPAIIG 729 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE ++Q++ NL++NA+K++ GG+V +TV T I I D+G GI + + Sbjct: 730 DETRIKQLLNNLVNNAIKYSPDGGQVDITVS-TDQENATIQITDHGIGIPQYAFAHLFDK 788 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + + G GLGL I + I+ H G + S + +G LP Sbjct: 789 FYRVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALPL 839 >gi|260901217|ref|ZP_05909612.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308106702|gb|EFO44242.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 806 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E S S + I+ + EK ++ Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449 Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 + + D+ +RQV+ NLL+NAVKFT G V VT+ I+I Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568 Query: 466 VEVIA 470 Sbjct: 569 TTFTV 573 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 7/237 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK+ E K F++ +SHELRTPL +I G ++ + P ++E K + S Sbjct: 710 ERKQIE---RMKDEFVSVVSHELRTPLTSIYGSLGMLASGLL-PTDSEQGKRLLQIAADS 765 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ RIE+G+ ++ +++D++ + + ++Q A + + + Sbjct: 766 TERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVTLSISALSG 825 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V AD + Q + NLLSNA+KF++ G V + G ++IKD G GI ++ Sbjct: 826 --QVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGA-QQEGDEVLLTIKDTGRGIPTDKL 882 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ F Q + G GLGL I +SIM HGG+ S L EG LP Sbjct: 883 ESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESILGEGSTFYVTLPL 939 >gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 880 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 28/288 (9%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + + + AE N AKS FLASMSHE+RTP+N ++G +E+ + Sbjct: 470 HDITERKRLEEDLFQAKAEAEAANRAKSEFLASMSHEIRTPMNGVIGLTEL----ALMQE 525 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+G + +S LL++IN+ILDLS+IEAGR EL + L D++ ++L Sbjct: 526 PKGKVRDYLGLVKQSANSLLDIINDILDLSKIEAGRVELENADFDLRDMLDSLFETMRLT 585 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A+ K + IDP + + DE +RQ+ +NL+ NAVK+T G+V V VG + Sbjct: 586 AERKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNLIGNAVKYTET-GQVSVHVGLENAHDS 644 Query: 401 -------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +S+KD G GI + ++ + F G A + G GLGL I Sbjct: 645 PVAGDSDKPEHICLLVSVKDTGIGIPKNKLEKIFDPFDTG--ARGAKHDGTGLGLTITNR 702 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 ++ GG+ ++RS+ +G P + +TQ A Sbjct: 703 LVELMGGRIIVRSEPGQGSTFTFS------AALEPASDTATTQESLQA 744 >gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001] gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001] Length = 946 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 17/351 (4%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + Y I+ + + ++ +L P +V I Sbjct: 561 FIANQVSGILGRYFIIFSILIFCTGIILYSIYINILK-------IPHIVPNQLYIIFWKT 613 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRA 242 L T +++F ++ +++ Q I + + ++RA Sbjct: 614 FF---LLSAPLTVIAWFLVLSQRSYRAAEDENRFQTRLLMREIHAHKRTDQELKKAKERA 670 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E NL+KSRF+ +SHE+RTPLN+I+G++ ++E + + P E E + I RS +HL Sbjct: 671 ESANLSKSRFMVGVSHEIRTPLNSIMGYAYLLENKMLTP---EKQNEGLKVIQRSTEHLS 727 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 LI + D+S+IEAGR E+ I+ + ++ ML+ + +K + + I L V Sbjct: 728 GLIEGLFDISKIEAGRMEILREKINFREFLKHLTEMLRFQVNQKKLLFIEHIPDDLPEYV 787 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D++ +RQ+++NLLSNA+KFT G V +V W I+D G GI +I + Sbjct: 788 MTDQRRLRQILINLLSNAIKFTPS-GSVSFSVRWNME-IAIFEIQDTGIGIPATDIERIH 845 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + S + QG GLGL I + ++ GG+ I+S++ G L Sbjct: 846 EPFQRSSHPASQSIQGTGLGLTITRLLVQILGGELTIKSQVGLGTTCRVRL 896 >gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] Length = 991 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 10/265 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 L + +L L A+ S+ R+ AE N AKS F+A+MSHE+RTPLN +LG E+ Sbjct: 507 ALRDVTAQVELEDNLRRAREDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLEL 566 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + P +E + I S L+ +I+++LD S+IEAG+ ++ +L ++ Sbjct: 567 LARSPLQPG----QRERLDRIRFSADALMRIISDVLDFSKIEAGQLDVEPVPFALRPLIE 622 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 ++ A K + ++ +D + D +RQ++ NL+ NAVKFT GR+ + Sbjct: 623 GVALLFAPDALRKGVRLYFTVDAAADQRCVGDAHRIRQILTNLVGNAVKFT-ESGRILLR 681 Query: 393 VGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 G + + D+G G++ + + F Q ++ G GLGL + I Sbjct: 682 AELHRAAGQGAQLRVQVIDSGIGMSPEQTAQLFQPFQQADASVSRRYGGSGLGLALCLQI 741 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 GGQ + S G +LP Sbjct: 742 AQAMGGQVSVESTEGVGSSFTLLLP 766 >gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 893 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 16/286 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAK-SLSDETR--KRAEEENLAKSRFLASMSHE 259 + + + + L A+ E A + S+ + K E+ + KS+FLA+MSHE Sbjct: 448 LQAQTEELQTHSVEMHLLNERLGAQKEAALIAASELEKYAKELEKSSKYKSQFLANMSHE 507 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S+++ G L E Y IH SG LLNLIN+ILDLS++EAG+ Sbjct: 508 LRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHNSGSELLNLINDILDLSKVEAGKM 566 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++ ++L ++ A+ KN+E ++ L +++D + Q++ NLLSN Sbjct: 567 QIEMDLVNLTELPELMEGYFSKSAESKNLEFDIEVADDLPDMMYSDGMRLHQILRNLLSN 626 Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 A+KFT G V + V SG S++D G GIA + + +F QG Sbjct: 627 AIKFT-ESGSVKLKVKKMNSIVTSDFIISGDVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+ + GG + S+ G I LP Sbjct: 686 ETTARRFGGTGLGLSISLHLAKLLGGYITVESEEGIGSTFILYLPL 731 >gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 1139 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R+RAE + AK+ F +++SHE RTPL +LG E + + G L+ + +E + Sbjct: 332 EAERQRAEALAEIDRAKTTFFSNVSHEFRTPLTLLLGPVEDLLNQAAGKLDADEQEE-LK 390 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IHR+G LL L+N +LD SRIEAGR + + I L E + + ++ ++ Sbjct: 391 TIHRNGLRLLKLVNSLLDFSRIEAGRIQAAYQEIDLAGYTAELASVFRSAIEKAGLKFTV 450 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 P ++ D +++LNL+SNA KFT G + V + G+ ++++D G GI Sbjct: 451 DCPPLAEPIFVDRDMWEKIVLNLISNAFKFTLQ-GEIEVRLRQV-GKNAELTVRDTGAGI 508 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ V F + +G G+GL + ++ HGG+ + S+L +G L Sbjct: 509 PAEQVNRVFERFHRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFTVSL 568 Query: 473 PNTRVLNFIPE 483 P + + +P+ Sbjct: 569 PFGQ--DHLPQ 577 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 17/251 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKS------RFLASMSHELRTPLNAILGFSEVIELETMGPL 282 E + R E + F S+SH+LR PL ++ GF+EV++ + + Sbjct: 894 ERKQIEEKLERLVVERTAKLRDTIGELEAFSYSISHDLRAPLRSMQGFAEVLKEDCRDQI 953 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E Y+ I S + + LI ++L S++ R EL I+ +++ + Sbjct: 954 GPEGQL-YLNKISDSARRMDRLIQDVLTFSKM--ARTELILEPINTEKLLQTILDSY-PS 1009 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQ 401 Q +I K L V +E + Q I NL+ NA+KF G ++V Sbjct: 1010 FQPPFSQIAIK--ARLPLVLGNEAALTQCISNLIGNAIKFVQPGTVPQISVWAEEQDGYV 1067 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + KDNG GI + + F + I + +G G+GL I + + GG+ + S+ Sbjct: 1068 RLFFKDNGIGIPKISQERIFGIFQR----ISTGYEGTGIGLAIVKKAVERMGGKVGLYSE 1123 Query: 462 LREGVEVIAIL 472 G L Sbjct: 1124 EGRGSTFWLEL 1134 >gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 601 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++E + Sbjct: 362 ITQLKETEQMLIKAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSMLEE----AEDQ 417 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +YI I + + LL LI++ILDLS+IEAG +++ ++ + + +Q++ Sbjct: 418 EEKHQYITIIEDNNKLLLQLISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMK-T 476 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ K + + +D+ + QV+LN ++NA+KFT+ G + + G S Sbjct: 477 SPQVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQI-DGNEVKFS 534 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + S G GLGLPI QSI+ GG+ + S+ Sbjct: 535 VQDTGMGIEPEKQEAIFTRFVKL----NSFIPGTGLGLPICQSIVTQLGGKIGVESEPGR 590 Query: 465 GVEVIAILP 473 G P Sbjct: 591 GACFWFTHP 599 >gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1419 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 14/271 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + +S R+RAE+ + AKS FLA+MSHE+RTP+NAI+G ++++ + P Sbjct: 1019 ITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLADTPLTP--- 1075 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ SGQ L+ +IN+ILDLS++EAG+ L L + + + + +A+ Sbjct: 1076 -RQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTCAVFTPQAE 1134 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 EK + +F +DP L V+ D + Q++ NLL+NA KFT G + ++ T S Sbjct: 1135 EKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHE-GEIRLSASATLLGPSAF 1193 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ +D G GIA +I V +F Q + G GLGL I++ + G+ I+ Sbjct: 1194 LLRLTCRDTGVGIAPDDIARVCDNFFQVGGNQRR---GTGLGLAISKRLTELMQGELSIQ 1250 Query: 460 SKLREGVEVIAILPNTRVLNFIP-EDNHEST 489 S L +G + A + E ES+ Sbjct: 1251 SILGQGATITATVRLEIAAESASGEQTPESS 1281 >gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 23/269 (8%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + ++ AE N AKS FLASMSHE+RTP+N I+G +E+ + ++Y+G + Sbjct: 556 LAQAKQEAERANRAKSEFLASMSHEIRTPMNGIIGLTEL----ALMQRPKAKVRDYLGMV 611 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +S LL +IN+ILDLS+IEAGR EL +S S +++ +++ A+ K I KI Sbjct: 612 KQSADSLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKI 671 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------RGQYI--SI 405 DP + + ++ DE +RQ+ +NL+SNA+KFT G V V V I SI Sbjct: 672 DPRVPASLFGDEGRLRQIFVNLISNALKFTEA-GSVSVQVTAEDHMDLAKPGPVEIIASI 730 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI + ++ F G + G GLGL I + ++ GG+ ++S+ +G Sbjct: 731 RDTGIGIPANRLESIFEPFDTG--TRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKG 788 Query: 466 VEVIAI------LPNTRV-LNFIPEDNHE 487 +P + + P E Sbjct: 789 STFSFSVMLELAIPEEKPEMAAQPAAEPE 817 >gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1307 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 97/258 (37%), Positives = 158/258 (61%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + A+ + R AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP+ Sbjct: 1050 RDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPV 1109 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++ A+SL D + E + M+Q + Sbjct: 1110 ANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQ 1169 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I L V AD + +RQ+ LN+LSNA+++T GG+V V+ + + Sbjct: 1170 ANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVV 1229 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G G+++ EI L F Q + + G GLGLP+ ++++ + +F I S Sbjct: 1230 MRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRARFTINSTP 1289 Query: 463 REGVEVIAILPNTRVLNF 480 EG V P+TRVL Sbjct: 1290 GEGTLVEVAFPSTRVLAE 1307 >gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato Max13] gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato K40] gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] Length = 576 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 24/276 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L A+ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D G GIA+ ++ + +F Q ++ +G G Sbjct: 469 ILDGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564 >gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 459 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 147/352 (41%), Gaps = 7/352 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 + T + + ++ + + L + + F + + S +++ Sbjct: 113 GIAEFPSELFITGFFDNVLSNSIGIPIQVEGSPHALFLRPDITVQFGEMRIFFSIIMVIA 172 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + + + + +T + ++A S + Sbjct: 173 ILLSILLVGIITRYIVKPIVKLTEATQSVAQGQYDIKLNVTRRDELGQLADHFSQMAKGL 232 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A + + F++++SHE+++PL +I GFS+ ++ + + + E + Y+ I + + Sbjct: 233 A-QLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---SEEQQQHYLSIIEAESRRM 288 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L ++L L+ ++ L +S + + +++ + ++ ++ + + V Sbjct: 289 SQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVL--FHTEWNWRSKDLTIDMSLPPTYV 346 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 + D++ + QV NL++N++KFTA G + + V I I D G GI + +P + Sbjct: 347 YGDQQLLHQVWTNLITNSIKFTAPEGAISLRV-IEHNTQCRIEISDTGIGIPQEHLPHIF 405 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A +E GLGL I Q I+ HGG+ + S+ +G ILP Sbjct: 406 NRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457 >gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 896 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 6/254 (2%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L AE + R AE+ N K F+A +SH+LR+PLNAILG+++++ + Sbjct: 647 RKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKLLRTRQLP 706 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P +T + I R+ Q L+ ++L++SRI G+ +L ++L++IV+ + Sbjct: 707 P---DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVNLVNIVKASVETAY 763 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K I + ID S+ + D + QV+ NLLSNA+KFT GGRV V + + Sbjct: 764 PSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQLAKSDDSE 823 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I + D G GI +P V + Q + G+GLGL IA+ ++ HGG S Sbjct: 824 ILIQVSDTGLGIKPEFLPHVFDRYRQAHC--TAKHSGLGLGLAIARHLVELHGGTIQAHS 881 Query: 461 K-LREGVEVIAILP 473 + G LP Sbjct: 882 QGEGLGATFSIKLP 895 >gi|114328501|ref|YP_745658.1| cytosine permease [Granulibacter bethesdensis CGDNIH1] gi|114316675|gb|ABI62735.1| cytosine permease [Granulibacter bethesdensis CGDNIH1] Length = 1168 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 11/345 (3%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + A+ + + V L+ + + ML + + L Sbjct: 592 VFAMLGGSTGLMLLGIYHQTVSGLTRTDPLLRSAFWQAWCVMLLISGIAAWLLVLALQSR 651 Query: 211 NVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +V + + L+ E + + ++ AE NLAKSRF+ SHELR+PLNAI Sbjct: 652 HVAREESRRQTALLMNEIRAHRRTDAKLQKAKEAAESANLAKSRFVVGASHELRSPLNAI 711 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG+++++ ++ IG + RSG+HL LI +LD+S+IEAGR +++ A+ Sbjct: 712 LGYAQLM---DGDETLPPRWQRAIGIMRRSGEHLAGLIEGLLDISKIEAGRIDVARDAVR 768 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 L D + + + M +++A+ K I+ +L V+ DE+ +RQ+++NLLSNA+KFT Sbjct: 769 LGDFLDQIVSMFRIQAEAKGIDFIFDRPETLPDQVYTDERRLRQILINLLSNAIKFT-RY 827 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 GRV V W + + I D G GI E E+ + F + S A+ ++ G+GLGL I + Sbjct: 828 GRVTFRVRWR-SQIADLDITDTGIGIDEQELERIFEPFHRTSGALHASMPGIGLGLTITK 886 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF--IPEDNHEST 489 ++ GG ++SKL EG L + V P + + T Sbjct: 887 LLVQILGGDITVQSKLGEGSTFHIRLMLSEVQQSTEAPAETLQPT 931 >gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 391 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 130/254 (51%), Gaps = 14/254 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +L+ A+ +++AE +L+KS FLA+MSHE+RTPLNAI GF+E++ Sbjct: 141 HDITQLKQAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITGFAEILAS----AN 196 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +Y I + LL L+N+ILD+S+IEAG E + + + ++ + + Q++ Sbjct: 197 TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMK 256 Query: 343 AQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 + I +PSL S+ D + QV+ N +NA+KFT G +++G+ + Sbjct: 257 VNDAGGNIQIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEARDT 313 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 Y + D G GI ++P V F + ++G GLGL I+++I+ GQ Sbjct: 314 ELYFYVTDTGAGIPADKLPEVFGRFVKL----NKDKKGTGLGLSISKTIVNKLEGQIGAD 369 Query: 460 SKLREGVEVIAILP 473 S +G +P Sbjct: 370 SVEGKGSTFWFTIP 383 >gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] Length = 551 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 136/261 (52%), Gaps = 9/261 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----E 275 + + + + K L D+ R E N ++ F A++SHEL+TPLN IL +++ Sbjct: 261 QIEKIKQKSNENKKLLDKER----EFNKIRTEFFANLSHELKTPLNVILSSQQLLALYLR 316 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ E ++++ + ++ LL LI+ ++D++RI++G + L+ +++ I+ + Sbjct: 317 NGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENHNIVTIIEDI 376 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + + K+I++ D DE + ++ILNLLSNAVKFT GG++ V + Sbjct: 377 TLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGKIKVNI-H 435 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 G I+++DNG GI + +I + F Q + +G G+GL + ++++ H G Sbjct: 436 DDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKALIEMHNGT 495 Query: 456 FLIRSKLREGVEVIAILPNTR 476 + S+ +G E I P + Sbjct: 496 ISVESEYGKGSEFIIYFPINK 516 >gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1032 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + RA+ + AK+ FL+ MSHE+RTP+NAI+G + + N E + + + S Sbjct: 642 KARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS---AAGNKEQVLKCLEKLDNSS 698 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++LL+L+N+ILD+SRIE+G+ EL+ + + L + M++++A+ K + + D Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQAEAKGLSFTIQNDCRT 758 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 + AD+ + QV+LNL+ NA+KFT +GG + + + S+ D G GI+ Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471 +P++ +F QG+ I S G GLGL I+ ++ GG ++S+ G E Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878 Query: 472 LPNTRVLNFIPEDNHESTQY 491 LP + V E +ES Y Sbjct: 879 LPYSEVPAPQHEILNESPSY 898 >gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 596 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 13/349 (3%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 + E + + +A +I L+ SA F L A+F S ++ S + V Sbjct: 252 AVFSGIREAIVVTDAACDIILLNPSASRMFRLSGAMFQSRPLTMLGDSGLCALIEGVHRS 311 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 A + + S++ ++ + ++ R Sbjct: 312 RTAVLKEELAVMTVKGVRTMQVSSMPVVRDGEFDGSVFVLNDIT---------RLRNLER 362 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F++S+SHELRTPL +I G++E + M + E + ++ I + + L L+N+ Sbjct: 363 IRRDFVSSVSHELRTPLTSIRGYAETLLDGAM--NDPEHAQAFLRIILQESEQLTALVND 420 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LDLS+IE+GR E + + L +V + ML+ ++K ++ I P L V ADE Sbjct: 421 VLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQADEAY 480 Query: 368 MRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + VI NLL NAVK+ G G+V T G ++DNG GIA ++ + F + Sbjct: 481 LGIVIRNLLDNAVKYVDAGTGKVRFRAFRT-GDSVQFDVEDNGSGIAHQDLERIFERFYR 539 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + I+ +H G +RS+L G LP Sbjct: 540 VDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLPMA 588 >gi|85076393|ref|XP_955920.1| hypothetical protein NCU01823 [Neurospora crassa OR74A] gi|28916951|gb|EAA26684.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 2476 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 16/305 (5%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR--KRAEEENLAKSRFL 253 AL+ ++ L +A + AE + + ++ R K AEE AKS FL Sbjct: 1901 ALAMKAVEKVSAENVSMVALQKRALAKAVEAETKARNAEAEAIRNVKLAEEAAKAKSIFL 1960 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A++SHELRTPLN ++G SE++ + N+ E I S LL +IN+ILD SR Sbjct: 1961 ANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSADLLLTVINDILDFSR 2016 Query: 314 IEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 +EA + +L A + ++VRE + + + +KN++I I+ ++ D + Sbjct: 2017 MEADKMKLYIIAFNPEEMVREVVRAASYSNKEKTSKKNVKIVHDINLPPMLIYGDPIRLH 2076 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 QV+ NL+ N++KFT G + + T +KD G GI+ ++ + F Sbjct: 2077 QVLGNLIGNSLKFT-EHGSITIGAKVDSETTEKATLTFWVKDTGIGISPQQLDKLFLPFS 2135 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + G GLGL I +S++ + G+ + S+ G V + + + Sbjct: 2136 QADESTARKYGGSGLGLSICKSLIESTMKGKIRLDSEENVGTTVWFTVTFDKAKPEVMAG 2195 Query: 485 NHEST 489 + +ST Sbjct: 2196 DTQST 2200 >gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 638 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + + R AE N ++ FLA+MSHE+RTP+ AILG ++++ P N Sbjct: 244 ITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN- 302 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+G LL +IN+ILDLS+I+AG+ E+++ + IV E ++ +RA Sbjct: 303 ---LQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAA 359 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QY 402 EK + + + D + +V D +RQ+++NL+ NA+KFT G V +TV + Sbjct: 360 EKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDE-GVVRLTVRFDEANSCLQ 418 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI EI + F Q + G GLGL I + GQ + S+ Sbjct: 419 FHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQY 478 Query: 463 REGVEVIAI 471 G Sbjct: 479 GVGSRFTLS 487 >gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1064 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 23/264 (8%) Query: 238 TRKRAE-EENLAKSR----------FLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 R AE E +AK FLA+MSHE+RTP+N I+G +++ ++ N Sbjct: 397 ARNAAEQELVMAKDNAEAASKAKASFLATMSHEIRTPMNGIIGMIDLLLTSSL----NRD 452 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + I S LLN+IN+ILD S+IEAG+ EL S+ +++ I + A EK Sbjct: 453 QRSMTNTIRDSSFSLLNIINDILDFSKIEAGKLELESLNFSISELLESVIDTITPNADEK 512 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT---AIGGRVHVTVGWTSGRGQY 402 + + DP++ + D +RQV+ NL+ NAVKF+ G V +T+ Q Sbjct: 513 RVTLELYTDPNIPHHIQGDPVRIRQVLFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQL 572 Query: 403 ----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I I+DNG GI ++ + F Q + G GLGL I Q+++ GG+ + Sbjct: 573 VFLTIEIQDNGIGIEAKQLERLFQPFTQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDV 632 Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482 S + +G L + P Sbjct: 633 SSTVGKGSIFKVNLSFPYIERPSP 656 >gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 2161 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AK F++++SHELRTPL +I G+ +++ L L NE Y+ + + L+N Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKL-NEEQLSYLSVVKSNTHRLMN 1975 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+IL++ RI+ + L+ IS+ I E L+ + K + ++ V A Sbjct: 1976 LINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMA 2035 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE + QV+LNL SNAVK+T G V + G + + DNG GI+ + + Sbjct: 2036 DETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2095 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + ++ G GLGL IA+S + HGGQ + S+ +G I+P PE Sbjct: 2096 FYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIPL-----TQPE 2150 Query: 484 DNHEST 489 +T Sbjct: 2151 SESAAT 2156 >gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] Length = 608 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 113/236 (47%), Gaps = 5/236 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E +++ ++ Sbjct: 369 EKNERERREFVSNVSHELRTPLTSMHSYIEALSEGAW--KNPEVAPDFLKVTLEETDRMI 426 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G EL ++ ++V + + ++KN I ++ Sbjct: 427 RMINDLLNLSRMDSGTSELQLEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLW 486 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + QV+ N+L+NA+K++ GG++ + T S+ D G GI + +I V Sbjct: 487 LEIDTDKIIQVLDNILNNAIKYSPDGGKITCRLLETHNN-AVFSVTDQGLGIPKKDIAKV 545 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A + G GLGL I++ ++ H G + S+ +G LP Sbjct: 546 FDRFYRVDKARARKQGGTGLGLAISKEVIRAHNGFIWVESEEGKGSTFYISLPYEP 601 >gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330] gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330] Length = 1035 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|332532320|ref|ZP_08408200.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332038187|gb|EGI74633.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 522 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 117/237 (49%), Gaps = 10/237 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ AE AKS FLA+MSHE+RTP++ I+G + ++ + + + Y+ Y+ I S Sbjct: 3 AKEEAEHLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEKGL----PDEYEHYLDKIKYS 58 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL +IN+ILD S+IE+G L E S+ +V AQ K + ID + Sbjct: 59 SDQLLVVINDILDFSKIESGNVNLEEFPFSVNSVVDYIKATFNELAQSKGVTFDISIDEA 118 Query: 358 L-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ----YISIKDNGPG 411 + + D + QV+LNL SNA+KFT G V + Q Y ++KD+G G Sbjct: 119 VKLDLIGDVVRINQVLLNLCSNAIKFTPHGTVSVLIESRKLLDDPQSVCLYFTVKDSGIG 178 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 IAE + + SF Q + G GLGL I++ + GG + S G E Sbjct: 179 IAEDNLSNLFESFTQADSSTTRKFGGTGLGLTISKRLCQLMGGDITVHSTQGVGSEF 235 >gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19] Length = 2129 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 151/353 (42%), Gaps = 24/353 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +++L F + FL+ + + I + + LA + A L Sbjct: 1326 VIELASLDEFSETHLDFLNQLTESLGIVLNTIETNTRTEELLAQSQSLA-GELKTQQEEL 1384 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260 ++N ++ E+E +E RK EE + KS FLA+MSHEL Sbjct: 1385 RRTNDELQDKALLLVKQKDEVEAKNKEVEEARKSLEEKAEQLTLTSKYKSEFLANMSHEL 1444 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN++L ++ + G L N+ Y IH G L+ LIN+ILDLS+IE+G Sbjct: 1445 RTPLNSLLILAQQLYENAEGNL-NDRQIRYAKTIHSCGDDLIQLINDILDLSKIESGFIS 1503 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + S++ + +I + ++ +N+ + D L + + D + + Q++ NLLSNA Sbjct: 1504 ANISSVKIGEITSFVETTFKPISEARNLRFRIETDYELPASMETDIQRLNQILKNLLSNA 1563 Query: 380 VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426 KFT G V + + SI D G GI + + + +F Q Sbjct: 1564 FKFTEK-GEVSLRIYSAKKSWKPGLPTLDSAPTVVAFSISDTGIGIPQEKQLIIFEAFQQ 1622 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + G GLGL I++ + GG + S+ G +P T V N Sbjct: 1623 AEGSTSRKYGGTGLGLSISRGLAELLGGTIELESQAGMGSTFTLYIPLTSVTN 1675 >gi|254492357|ref|ZP_05105529.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224462249|gb|EEF78526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 557 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 17/301 (5%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 L Y ++ ++ L A + +LI ++ ++AE N AK+ FL Sbjct: 129 IGTLCLIDYNPRDFDQTALRRLKAFAHEIELILDMRRTT-------EKAEAANDAKTTFL 181 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+M+HELRTP++ I+G +++ T+ ++ + +S +L++IN+ILD S+ Sbjct: 182 ANMTHELRTPMSGIIGILDILGQSTL----DKAQLNQVSLASKSANQMLSVINDILDFSK 237 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVI 372 I+A + ++ A +L ++ I L Q + + +V D +RQV+ Sbjct: 238 IDADKVTVNHEAFNLYEVFSSVIETFALHQQSQKKKFILNCQWDKTLNVNGDPMRLRQVL 297 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGS 428 NLLSNA KFT G V VT + I + D G GI + ++ + F Q Sbjct: 298 FNLLSNADKFT-TNGEVAVTAKVFDIDAENIRINCDVSDTGIGIEQDQLERLFIPFEQLD 356 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 A G GLGL I+Q + GG + SKL G + + E+ E Sbjct: 357 NASSRKYGGTGLGLVISQRLCELMGGSISVESKLGHGSTFRFFITLQKTSVVSDEECDEV 416 Query: 489 T 489 T Sbjct: 417 T 417 >gi|83816430|ref|YP_444297.1| putative redox sensing protein [Salinibacter ruber DSM 13855] gi|83757824|gb|ABC45937.1| putative redox sensing protein [Salinibacter ruber DSM 13855] Length = 1668 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 10/290 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + D A L AK ++ R+ AE + AKS FLA+MSHE+RTPL Sbjct: 1379 RRLVEVIADYATLVLGRVDREAVLRGAKEEAERARQEAEAASQAKSVFLANMSHEIRTPL 1438 Query: 265 NAILGFSEVIELETMGPLNNET----------YKEYIGDIHRSGQHLLNLINEILDLSRI 314 +ILGF+E I E G E +++ I SG+ L+N + +L+LS++ Sbjct: 1439 TSILGFAEAIGEEVGGDDQTEKTDRSDVDLPALRQFAALIESSGERLMNTLTGVLNLSKL 1498 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG L+ + L + + +A++ +++ + ADE G++ V+ N Sbjct: 1499 EAGEMNLAPEPVDLAAEAEKAVQEFDPQARDAGVDLAAEGGQDAVWARADEGGVQIVLRN 1558 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVK+T GG V V+ + + + D G G+ ++ + F Q S + Sbjct: 1559 LLSNAVKYTGEGGAVRVSARTDGKQDAVLEVVDTGIGMDPAQVEDLFEPFRQESEGLARE 1618 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 +G GLGL + + G + ++ EG LP RV N + E Sbjct: 1619 YEGTGLGLAVTWKALQQMEGGVEVETEKGEGTCFTVRLPAARVENGLDEP 1668 >gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 873 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 487 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 542 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 543 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 602 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ Sbjct: 603 Q-GVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 658 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFS 714 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP V + D+ + Sbjct: 715 KGTTFTFTLP-YTVAESVSVDSEKKND 740 >gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1831 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + +L + +++ + F FL+ Sbjct: 1206 KRTILVENAPTGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVVELASFTPFTAIQKDFLN 1265 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I + L K+ + EK +L Sbjct: 1266 QIAEMIATSVNTISVNTKTERLLKQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1325 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1326 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1385 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1386 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1444 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G + + Sbjct: 1445 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1504 Query: 392 TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 S+ D G GIA ++ + +F Q Sbjct: 1505 RPARDDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1564 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1565 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1606 >gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341] gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341] Length = 569 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + +S K++LI +E+ +K AE+ N +KS FLA MSHELRTPLN Sbjct: 167 RFRPLLERAISDIEHKEELIKLVEIRTRELRLAQKFAEQANQSKSNFLAMMSHELRTPLN 226 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG +V+ ++ E + + S + LL +IN++LDLSRIE+G + L Sbjct: 227 AVLGLIDVLRGDSTSY-----QAELLEQMENSAELLLIIINDVLDLSRIESGHFSLHCHW 281 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L + + ++ + AQEK I + + D + Q++ N++ NA+KFT Sbjct: 282 VDLKKKLDQSLVYHRQIAQEKGIAFNVQTHINERLEYYTDSARLTQILFNIVGNAIKFT- 340 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G+V + + + +KD G GI + I + T F Q +I G GLGL I Sbjct: 341 KSGQVDIDLIY-GTHQVTFRVKDTGIGIEKNRIDRLFTPFIQADNSITRNYGGTGLGLAI 399 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ GG + S+L G I +P Sbjct: 400 TKHLIELMGGSIQVESELEVGTTFILQVP 428 >gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 808 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 14/267 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS +I + Sbjct: 422 VTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAES----DDA 477 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y ++ + + LL LINEILDLS+IE+G E S SL ++ RE R Sbjct: 478 EERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTP 537 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYI 403 + + + + + D+ + QVI NL+ NAVKFT G ++ G+ Sbjct: 538 Q-GVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVF 593 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFS 649 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G LP V + D+ + Sbjct: 650 KGTTFTFTLP-YTVAESVSVDSEKKND 675 >gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 793 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 9/302 (2%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 +I+ + ++ + + + F IL + E E + L Sbjct: 210 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 269 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A+ N AKS FL+ MSH++RTP+NAI+G + + + + E + + I Sbjct: 270 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 326 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354 S + LLNLINE+LD+S++E+G L++ + ++++ I M+Q +K + Sbjct: 327 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 386 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409 + D + ++QV+LNLLSNA+K+T G++ + + I++ DNG Sbjct: 387 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEITVIDNG 446 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + V F + A QG GLG+ I+++I G+ L+ S+ +G Sbjct: 447 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 506 Query: 470 AI 471 Sbjct: 507 FT 508 >gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104] gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322] gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8] gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5] gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96] gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704] gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1] gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG] gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104] gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322] gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8] gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5] gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96] gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704] gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1] gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG] gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137] gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017] gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027] gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244] gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012] gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031] gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043] gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312] gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302] gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341] gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342] gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346] gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630] gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62] gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF] Length = 609 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|170725402|ref|YP_001759428.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810749|gb|ACA85333.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 819 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 125/278 (44%), Gaps = 13/278 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q D A ++ + ++RAE+ N KS FL+ MSHELRTP+NA+L Sbjct: 269 KLQEANDQAEARVKARTLELQQAKERAEQANQTKSSFLSMMSHELRTPMNAVL----GSL 324 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ I S ++L+ ++N+ILD+++IEAG+ +L + S+ +++ Sbjct: 325 DLLSLSKQTPESRDLIETATTSAKNLIFILNDILDINKIEAGKMQLEQRDFSITEVIDNV 384 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT----AIGGRVH 390 + + A K I++ DP++ + D +RQ+I NLL NA+KFT G V Sbjct: 385 VQIYYPLANGKRIKLDVTEDPTIPKYLEGDAVKVRQIIFNLLGNALKFTSTTTEKQGEVQ 444 Query: 391 VTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + SI DNG GI + + T F Q + G GLGL I Sbjct: 445 LNINIVEHNSIIYKVAFSIVDNGIGIEKETQKKLFTPFIQAQRSTTREYGGTGLGLAICG 504 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 ++ GG+ + S EG LP R E Sbjct: 505 NLAQLMGGEIALTSCPNEGSTFKVELPFWRSKQHTDEP 542 >gi|253578663|ref|ZP_04855934.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849606|gb|EES77565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 943 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + L + + A K A E A+ +++ + A+ N AK+ FL Sbjct: 513 VATVWVLLIFGWLLTTMAMIAMRLSARKKAQKAAQETAEEMAELA-EHAQAANKAKTAFL 571 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 + MSH++RTP+NAI+GF+ + M ++ K + I S +HLL+LIN++LDL+R Sbjct: 572 SHMSHDMRTPMNAIMGFTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDVLDLTR 627 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372 +E+G+ + + L I + + + ++I + + + + +V D +R V+ Sbjct: 628 VESGKVKYNPVPTDLKSITDFALDITKGFLTNRDISFKIQREEAKIPNVLVDSVRLRDVL 687 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 +N+LSNAVKFT G + G + I D G G++E V F Q Sbjct: 688 VNILSNAVKFTPDGETITFEARCQEKGGDGYINMHYRISDTGIGMSEEFTKEVFEEFAQE 747 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +++ G GLG+ I + + GG ++SK EG +P Sbjct: 748 DSDVRTQYHGAGLGMAIVKKYVDMMGGTISVQSKKHEGTTFTVDIPLE 795 >gi|83313114|ref|YP_423378.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947955|dbj|BAE52819.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 658 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 168/397 (42%), Gaps = 14/397 (3%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 L++ + + R+ + V + + + L LV + ++ Sbjct: 6 VRLAIAIVLAVGLAALARARTSRMIIAVTHLHLYTFFFLNALVFAHPLLDRHGGMFFP-- 63 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 LIA+S+ + L L +V+L A + + ++ Y+ Sbjct: 64 -LIAMSMFMFAPGPLRRVALLCAVGPLVSLLAWAELREVPESPADMAIITLMTG-VAYLV 121 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + + L+ A+ + ++ AE AKS FLA MSHE+RTP+ Sbjct: 122 GATARIQFERMGRRQFL--LVEGERQARITLLDAKEAAEAGTRAKSEFLAVMSHEIRTPM 179 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ILG ++ + + +E + +H S + LL +++ ILDLS++EAGR E S Sbjct: 180 NGILGMVRLLLDRPLEAED----RERLEMVHHSAELLLGILDNILDLSKVEAGRMEFERS 235 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 S + +L RA+EK +E+ I P + V D +RQ++LNL NA+KFT Sbjct: 236 PFSPARTLAGIQTLLSARAREKGLELSHAIGPEVPEWVEGDGGRLRQILLNLAGNALKFT 295 Query: 384 AIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + V + S+ D G G+ E EI + +F Q +I G GLGL Sbjct: 296 DSGHVLIRVGLAGDGSGRLEFSVTDTGIGLGEAEIGRLFHAFAQADSSITRRFGGTGLGL 355 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477 I + ++ GG+ + S+ G LP R Sbjct: 356 AICRRLVEAQGGEIGVESRPGVGSRFWFRLALPAGRA 392 >gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 880 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 91/450 (20%), Positives = 179/450 (39%), Gaps = 35/450 (7%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 L VL++ + + W I+ + + L L M + K G R+ + Sbjct: 14 TLLIVLIIVTRWIYPYLSKSVVGWKTISYGLLFSLLGLLVMQMPLETKHGLHMDVRLVSV 73 Query: 112 VGQIAIGLCWTLLT----LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY--AVFL 165 G W++L + + A ++ AL +A L Sbjct: 74 ALAGIFGGPWSVLITSVVVGVYRISLGGAIIFPTGALIVTALLSAAAYRIRLRNEKRFLY 133 Query: 166 SFFPVVVALSTQAIMSMHVLDI-------------SLAGMLATALSFFTYITYHLFK--S 210 + + + + Q ++ + + F++ + Y + + + Sbjct: 134 IAWGLGLVIGVQTVLWSFLAPADSMKLFQSEFATTFIIFHTIAVPVFYSVMAYEIKRYET 193 Query: 211 NVKILSCQAEKDDLIAELEVA----KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++ + ++L+ L E + AEE + AK FLA+MSHE+RTP+N Sbjct: 194 EQTLVHYKEHLEELVEVRTQELASNNRLLVEAKLSAEEASRAKGEFLANMSHEIRTPMNG 253 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G + ++ + + ++Y + S +L+ +IN+ILD S+IEA + L + Sbjct: 254 IIGLNHLLRQTEL----TDQQQDYSNKMLLSANNLITIINDILDYSKIEANKIVLEQIDF 309 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385 L +++ ++ ++A EK + + + + D QV++NLL+NAVKFT Sbjct: 310 DLFEVLHNVSNIVNVKAYEKGLHFHFSVHHEVPQMLVGDPHRFAQVLVNLLNNAVKFTER 369 Query: 386 GGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V V + G + ++ D G G+ + + F Q ++ G GLG Sbjct: 370 -GEVSVAIDQLPSTGSSVLLRCAVSDTGIGLTREQQSKLFRHFTQADMSTTRKYGGTGLG 428 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 L I++ ++ GG ++S+ G Sbjct: 429 LVISKELVQLMGGTLTVKSEQGNGSCFSFT 458 >gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 1298 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 143/267 (53%), Gaps = 12/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++ A + AKS FLA+MSHE+RTPLN ++GFS+++ + N Sbjct: 647 ITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL----N 702 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +Y+ I+ SG+ LL +IN+ILD S+IE+G+ EL + D+V + I ++ ++Q Sbjct: 703 EMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVILFQSQ 762 Query: 345 EKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K++E+ I+P L + DE ++Q+++NLL NAVKFT G + + V + I Sbjct: 763 KKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLR-GEIELKVQKLRMDAERI 821 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + + +F Q ++ G GLGL I+ +I+ G ++ Sbjct: 822 ALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTSLSLK 881 Query: 460 SKLREGVEVIAIL--PNTRVLNFIPED 484 S EG E + P V+ ED Sbjct: 882 STPGEGSEFYFDIEVPYEEVIAGEEED 908 >gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N +KS FLA+MSHE+RTP+NAI+G ++ P +Y+ I S LL LI Sbjct: 411 NRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLI 468 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ + + L +I+ + ++ +A EK +E+ +D + D Sbjct: 469 NDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGD 528 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 + QV++NL SNA+KFT G V ++ ++++D G G++ +I + Sbjct: 529 PHRLGQVLINLTSNAIKFTQQ-GEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERI 587 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q A G GLGL IA ++ GG+ + S G Sbjct: 588 FQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638 >gi|328473184|gb|EGF44032.1| sensor histidine kinase [Vibrio parahaemolyticus 10329] Length = 806 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E S S + I+ + EK ++ Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449 Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 + + D+ +RQV+ NLL+NAVKFT G V VT+ I+I Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568 Query: 466 VEVIA 470 Sbjct: 569 TTFTV 573 >gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 870 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R A + + KS FLA+MSHE+RTPLNAI+GFS++++ + + Sbjct: 625 IQRYKDTEDALITARDHAMQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LNAFSK 682 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +E++G I+ + LL LIN+ILDLSRIEAG E + + +L I+++ Q + Sbjct: 683 EEVQEFVGLINTNCTLLLALINDILDLSRIEAGTMEFNLAEFNLNYIMQDIYDS-QYLSM 741 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +E+ + S+ D ++QV+ NL++NA KFT G + + + Sbjct: 742 PQGVELRIECPVEEGKSIHTDIVRLKQVVNNLVNNAKKFTVQ-GSITIGYTVDEPEYTTV 800 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI E + F + QG GLGL I Q+I+ + G + S++ Sbjct: 801 YVEDTGKGIPEEAAKHIFERFYKVDN----FVQGAGLGLSICQTIVEHLRGTISVFSQVG 856 Query: 464 EGVEVIAILP 473 G +P Sbjct: 857 RGTRFEVRMP 866 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 5/375 (1%) Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 R ++V A G+ + L PE + + IA+++ + + Sbjct: 327 RRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQIAIAVRSSKDRTRLEE 386 Query: 163 VFLSFFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + L Q + + L + L ++N ++ Sbjct: 387 LLEETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEETNAQLEEQTQL 446 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + +L + + E E N KS FLA+MSHELRTPLN+ L ++++ G Sbjct: 447 LELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQG 506 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L++E + + I +G LL LIN+ILDLS++EAG+ ++ + L + E Sbjct: 507 NLSDEQVR-FAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFA 565 Query: 341 LRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + AQ+K + +++P + + D + + Q++ NLLSNA+KFT G V + + +G Sbjct: 566 ITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEK-GEVSLRIYPDAGG 624 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D G GI E + + +F Q + G GLGL I++ + GG + Sbjct: 625 RIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVT 684 Query: 460 SKLREGVEVIAILPN 474 S+L EG LP Sbjct: 685 SRLGEGSIFTLSLPP 699 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 9/345 (2%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +++ LS+ A+ L + A + S+ + ++ ++ S++ + Sbjct: 542 MVVVLSLCAVGAAALGLVYAQEISTLTSAGDRLLLDSIFLKISAVLLIIVAVSSWWVVLG 601 Query: 205 YHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L+ Q E I + + ++ AE N AK+R++A +SHELR+P Sbjct: 602 SEGRHLAQDDLNRQNELLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSP 661 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+ILG+S+++ + + I I RSG+HLL L++E+LDL+RIEA R L Sbjct: 662 LNSILGYSQILLKN---EQLDAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEP 718 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + I + + + M++ +A+ K + + L V AD K +RQ+++NLL+NA++F Sbjct: 719 APILFAAFIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRF 778 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V + V T G + D G GIA + + F +G+ E G GLGL Sbjct: 779 TDT-GSVTLHVECT-GVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGL 836 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--LNFIPEDN 485 I + ++ G + S +G + LP + +P+ + Sbjct: 837 AITEKLILMMNGSLNLISTQGQGSTFVVRLPLMEINAFEALPQRD 881 >gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467] Length = 609 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKREFW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1289 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 152/346 (43%), Gaps = 30/346 (8%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 L I ++ + L ++ + L ++N KILS + + Sbjct: 831 AILVLWRINNIKEVAKRLEIAVSERTADLLSANRRLEEANTKILSQGEILERTVN---QR 887 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + +AE + KS FLA+MSHE+RTP+NAI+GF +++ + +++ +++ Sbjct: 888 TEELEIAKSKAEHSDKLKSAFLANMSHEIRTPMNAIIGFLHILDNKD---ISDVEREQFN 944 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-RAQEKNIEI 350 I +S + L+ LI++ILDLS IEAG E+S ++ ++ E + + +Q+K + Sbjct: 945 HIIRQSSKSLMALIDDILDLSAIEAGEAEISPQPCNVGELCDELGALFRESLSQDKKNNV 1004 Query: 351 FQKIDPSLSS---------VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 ++ + V D ++Q++ NL+SN++KFT G +H+ + + Sbjct: 1005 DFRLTGDVPDHFLVGGATLVLIDPLRLKQILWNLISNSIKFTDE-GEIHLGYSVSQDKEM 1063 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++D G GI + E + F + A K +G GLGL I Q++ G+ Sbjct: 1064 LEKASIEFIVQDTGIGIPKEEHQQIFNRFHKLDKAGKKLYRGTGLGLAITQTLTQLMEGR 1123 Query: 456 FLIRSKLREGVEVIAILPNTRVL------NFIPEDNHES-TQYKCY 494 + S G P V +P + + + + Sbjct: 1124 ITVDSTPGLGTTFKVTFPFNPVEIYPQKSPSLPTETGAAQADFSDF 1169 >gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 576 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 87/289 (30%), Positives = 144/289 (49%), Gaps = 30/289 (10%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI S QHLL+LIN+ILDLS++EAG L A+ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D G GIA+ ++ + +F Q ++ +G G Sbjct: 469 ILGGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 LGL + + + HGG + S G + LP P E+ Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR------PPATEEA 571 >gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023] Length = 591 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + +++ + + A EKNI++ + + D Sbjct: 424 LALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTNPPIIIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GGQ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGSTFRVTLPKK 590 >gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] Length = 939 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 141/282 (50%), Gaps = 9/282 (3%) Query: 212 VKILSCQAEKDD---LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + AEK L ++ + + E N KS+FLA++SHE+RTPL AIL Sbjct: 434 IALYRRGAEKRAKQQLTEQVTQRTAELQAIAQELREANDVKSQFLANISHEIRTPLTAIL 493 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ + E P E+ K+ + I R HL +LIN++LDLS+IEA R EL+ S + Sbjct: 494 GQTDALINELYEP---ESLKDELRVIQRHSDHLKSLINDVLDLSKIEANRLELNISCFDI 550 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG 387 +++V + M +A+ KN+ + D ++Q+++NL +NA+KFT G Sbjct: 551 VELVNDVHAMFITQAKAKNLRLILDNQVGNEFYTKLDLIRVKQILINLCANAIKFTHA-G 609 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 ++ + + + I +KD G G++ ++ + F Q +I G GLGL ++Q Sbjct: 610 QIIIALNKSEQGLVII-VKDTGIGMSSKQLKLIFECFSQADNSISRRFGGTGLGLSLSQQ 668 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + A GG ++S+ ++G + LP V +S Sbjct: 669 LAAMMGGYISVQSEYKKGSQFSFFLPCAEVNKSQSLIETQSA 710 >gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116] Length = 985 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + ++L+ A +E RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++ Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + P+ K Y I+RSG+ LL ++N++LD S+IEAG E+ L +V + Sbjct: 496 IDSGLNPM----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 ++ +AQEK + I+ + W D + QV+ NL+ NA+KFT G ++V+ Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVS 611 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + + D G GIA+ + T+ +F Q + G GLGL I++ I+ Sbjct: 612 LNPEDESQVLFEVSDTGIGIAKKDKKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GG + S+ G +P P + +C Sbjct: 671 GGCLDVDSEEGHGSRFWFSIPLE---ESEPVETVTIANARC 708 >gi|86742728|ref|YP_483128.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3] gi|86569590|gb|ABD13399.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3] Length = 1406 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 15/351 (4%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L + +++ S F + + + + IM+ + LA + Sbjct: 778 VLGVIELASFSPFSELHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 836 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++N ++ A ++ E+E+A+ +E ++ + KS FLA+MSHELRTPL Sbjct: 837 VELQRTNNELEEKAALLEEKNHEIELARIGLEEKAEQLALSSQYKSEFLANMSHELRTPL 896 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++L ++++ L+ ++ IH +G LL LIN+ILDLS++EAG+ + + Sbjct: 897 NSLLILAKLLADNPDRNLSR-KQIDFAETIHSAGSELLELINDILDLSKVEAGKMNVDAT 955 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 + + + A+EK + + P + DE+ ++QV+ NLLSNAVKFT Sbjct: 956 TVRTAALCDAVAGVFGPVAEEKGLSFQVNLAPDVPAEFVTDEQRLQQVLKNLLSNAVKFT 1015 Query: 384 AIGG-RVHVTVGW-----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 G R+ VTV ++G ++ D G G+A ++ + +F Q Sbjct: 1016 DTGTVRLDVTVARPDLPFLSPSLCSAGTVLSFAVTDTGIGVAVEKLRMIFEAFQQADGTT 1075 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I++ I GG + S + G LP+ P Sbjct: 1076 SRRYGGTGLGLSISKEIARLLGGAIAVSSVVGRGSTFTLYLPSAPPAQTPP 1126 >gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 1015 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 101/472 (21%), Positives = 200/472 (42%), Gaps = 26/472 (5%) Query: 34 DREIITLHVESLFRVSPIL-PLFVLLVANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90 +++ + L R S ++ L V+ V +I + + + + L + + + +G Sbjct: 165 AKQLQLEKSKELVRDSLVIGSLLVIAVYHIILYMLRRNDVTPLYFGLFCICIAVRTMLVG 224 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144 + + + + W I +G + + + T Sbjct: 225 SRFVLE-VFPAFSWEWFAKASYLTIYVGEFFLISYIYHLFPQFLSRKVWRLTQLFTMGLT 283 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L+ + + ++ L S V+ A+ ++ + ++ +L +L F T + Sbjct: 284 VLVLTTRIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 343 Query: 205 YHLFKSNVKILSCQAE--------KDDLIAELEVAKSLSDETR--KRAEEENLAKSRFLA 254 L ++ V + L+ ++ +++ S R +R + K FLA Sbjct: 344 DTLNRNGVLATPALLQFGVLGFVFLQALLLSMKFSRAFSQVERLSERLLTLDKLKDEFLA 403 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SHELRTPL+ I+G ++ + + G L + + + + SGQ L +L+N+ILD S++ Sbjct: 404 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVV-DLLRLMKVSGQRLAHLVNDILDFSKL 462 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 + L ++L V + +L AQ+K + + ++ + V ADE ++Q++ N Sbjct: 463 KHQEIGLVIVTVNLRLSVELTLQVLNPLAQKKGLLLSHQLPDDI-YVMADENRLQQILHN 521 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+ +T G V VT G+ + I D G GIAE + + SF Q +S Sbjct: 522 LIGNAIAYT-ENGTVTVTARRMYGQ-VSVQISDTGIGIAEADQVRIFESFEQVDPLHRSQ 579 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + G G+GL I + ++ H G + S+L EG LP P+++ Sbjct: 580 QGGTGIGLSITKKLIELHDGSIGVTSRLGEGSTFSFTLPLA--GEGKPKESP 629 >gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 876 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 11/293 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 F + ++ D E+ ++ E AE N+AKS FL+ MSHE Sbjct: 312 FWMLVRVYRADDLNTPQLITVFSDRTEEVR-SRQALQEAMMSAERANMAKSEFLSRMSHE 370 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLNAI+G + + + ++ + I S +HLL LIN++LD+S+IE+ + Sbjct: 371 IRTPLNAIIGLTTIAAASI---RDTAKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKM 427 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLS 377 L + + ++V + + +A+EK IE + ++ + D + Q++LNL S Sbjct: 428 VLQDEPFDIFELVNGFVSTVYAQAKEKGIEFRETMEGFGEDTVFIGDSLRLNQILLNLSS 487 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFTA GG + + V + D G G+ + + + F Q I Sbjct: 488 NAVKFTAPGGCIRLEVSRHRNGNAADVLRFILSDTGIGMTKDAMERIFQPFEQADATISK 547 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IPEDN 485 G GLG+ I ++++ GGQ I S+ G I +P + +PE + Sbjct: 548 RYGGTGLGMSITRNLITLMGGQIQIESESGVGTTCIVDIPFKKGEGSCLPEPD 600 >gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 590 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 5/238 (2%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE + + F+A++SHELRTP+ + G+SE I + G +E KE I+ Sbjct: 353 RDMTEERQLDKLRKDFIANVSHELRTPIAMMQGYSEAIVDDIAG--TDEEKKEMASVIYD 410 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+NE+LDL+R+EAG +L+ + L + Q ++EK I++ + Sbjct: 411 ESLRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIKLESEFSI 470 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D + QV+ NL+ NA++ T G V +TV + +G + + D+G GI E + Sbjct: 471 TEDDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVK-SEEKGLMVEVSDSGSGIPEED 529 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +P V F + A G GLGL IA++I+ H GQ ++SKL++G ++P Sbjct: 530 LPFVFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFSFVIPR 587 >gi|253566766|ref|ZP_04844218.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265763189|ref|ZP_06091757.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|251944329|gb|EES84818.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263255797|gb|EEZ27143.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 639 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE ++ E + RAEE N KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILDLSR+EA + L+ ++ + R+ + +++ Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 +E + + D + ++QV++NLL+NA KFT G + + Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI + + V F + QG GLGL I + + GG I Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626 Query: 462 LREGVEVIAILPN 474 G + P Sbjct: 627 YEGGARFVVSHPL 639 >gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 546 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 5/275 (1%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 IT + +++ L L ++ D T ++AEE ++ F++ +SHELR Sbjct: 271 RITTRDGRELFIQNRYAPQRNALGTLLSAIANVRDITAQKAEE--ERQNTFISVISHELR 328 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP++ I GF+E + G E Y+E + I L I ++LD+SRI AG L Sbjct: 329 TPVSIIKGFAETMLR-PDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRIAAGGLRL 387 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S +SL +V+E + + IE ++ + V+AD + +RQV NL+ NAVK Sbjct: 388 EYSDVSLQLLVKEVVRRFAAQV-GDRIEFEIRVPDDMPPVYADYERLRQVFTNLIENAVK 446 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 ++ GG + + G + + D G GI E + F + ++ G GLG Sbjct: 447 YSPNGGTIRIGA-RAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSGLG 505 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 L I ++I+ HGG+ + S++ G + LP +R Sbjct: 506 LYITRAIVEAHGGRIWVESQVGRGSRFLFTLPLSR 540 >gi|60681363|ref|YP_211507.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] gi|60492797|emb|CAH07571.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] Length = 637 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE ++ E + RAEE N KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 393 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 449 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILDLSR+EA + L+ ++ + R+ + +++ Sbjct: 450 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 509 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 +E + + D + ++QV++NLL+NA KFT G + + Sbjct: 510 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 568 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI + + V F + QG GLGL I + + GG I Sbjct: 569 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 624 Query: 462 LREGVEVIAILPN 474 G + P Sbjct: 625 YEGGARFVVSHPL 637 >gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 576 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 24/276 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L A+ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D G GIA+ ++ + +F Q ++ +G G Sbjct: 469 ILDGDWPVHSFSLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564 >gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] Length = 576 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 3/235 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + + +++ I + L+ L Sbjct: 342 LERVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVALKFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + + + + ++V E I +L+++A++KNI+ P + Sbjct: 400 INDLLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVDIKVPDGLEMNIY 459 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV S I +KD G GI E EI + F Sbjct: 460 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSNGMVVIKVKDTGIGIPEKEIERIFERF 518 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + G GLGL I + I+ +GG+ ++S+ G E I+P + + Sbjct: 519 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVIIPINKKAD 573 >gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 672 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 100/456 (21%), Positives = 173/456 (37%), Gaps = 25/456 (5%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGE 102 + +L +A + + + L +L + D Sbjct: 93 LVECLFCAVALLKLAGPDLSVGRPRHLALLVGVCLCATLVSGGLAALVFGLRGGDHLPLR 152 Query: 103 VYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 W +G + + C LL L E L AL+I++++ F Sbjct: 153 AVSWIAGNALGLLTLVPC--LLALSRARELLKERPVTRSGWVALAALAITSVAVFGQSRY 210 Query: 163 VFLSFFP----------VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 L P V+ + I+ V +T + Sbjct: 211 PLLFVIPPALALLALELEVLGAALGVIIVGAVAVWFTGVGSGPITLVQGDLTERALFLQL 270 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L + + L + AEE K+ FLA+MSHELRTPL A+LGF++ Sbjct: 271 FLGVSILSALPLASTSAQRRRL----QAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQ 326 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++E + P + + Y+ + +G+ L IN+ILD S++EAG+ ++ +S+ ++ Sbjct: 327 LVERQ---PELSAETRAYVQRVTSAGKALRATINDILDFSKLEAGQVDIKPQPMSVAELT 383 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 RE + M +A+EK + + L + AD +RQV+LNL+ NAVKFT + G + V Sbjct: 384 REAVDMFAAQAREKGVLLRLADLSDLPLLIEADPDRLRQVLLNLIGNAVKFTEV-GEIAV 442 Query: 392 TVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + D GPG++ + + F Q G GLGL I + ++ Sbjct: 443 QARLDARADHIVFEVSDTGPGMSADQSKRLFQRFSQVDAGAARKHGGTGLGLAICKGLVE 502 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GG + S+ +G +P Sbjct: 503 AMGGSIGVDSRQGQGSRFWFTIPAILAEPASEPSTP 538 >gi|207723589|ref|YP_002253988.1| composite two-component regulatory protein (sensor kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206588791|emb|CAQ35754.1| composite two-component regulatory protein (sensor kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 610 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 193/488 (39%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP- 70 + + P + LGL + ++ D L I VL V + ++ Sbjct: 1 MTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGSR 60 Query: 71 -IFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + G+ W Sbjct: 61 LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 120 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++A Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 178 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L ++F ++ + V+ + + E L A+ DE ++RA Sbjct: 179 GLYVRGVLLFFVAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +ET + + Q + L Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 287 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 347 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 464 Query: 485 NHESTQYK 492 ++ K Sbjct: 465 AQPRSEQK 472 >gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] Length = 720 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 12/254 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I E +VA+ ++RAEE N KS FLA++SHE+RTPLNAI+GFS ++ + + Sbjct: 476 FITERKVAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILTMT----ED 531 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E KEY+ I ++ LL LIN++LDLS+IEAG +L S +L ++ +++ R Sbjct: 532 EEEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFALNGVLMTLKGVVESRL 591 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQY 402 Q IF+ P V +++ ++Q++LN L+NA KFT+ G + G+ + Y Sbjct: 592 QSSVELIFEPGMPDYYVVCSEKNRLQQLVLNFLTNACKFTSTGS---IRYGYEVREKEIY 648 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI E ++ + F + S +QG GLGLPI Q I+ N GG+ + SKL Sbjct: 649 YYVTDTGTGIPEDKLHLIFERFIKLD----SFKQGTGLGLPICQLIIQNMGGEIGVNSKL 704 Query: 463 REGVEVIAILPNTR 476 EG LP Sbjct: 705 GEGSTFWFTLPLKP 718 >gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1400 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 17/346 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 LP V+ S +H+ + + Sbjct: 841 LPIQYEDQVLGVIELASFSRFSEVHLAFVDQFVNTIGVSINTIIANARTESLLSESQRLT 900 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E EL+ + + +E + KS FLA+MSHELRTPLN++L + ++ Sbjct: 901 TELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNP 960 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L+ E +++ IHRSG LL LIN+ILDLS+IEAGR ++ + ++ ++ Sbjct: 961 DGRLS-EQEEQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRAKKLPVVKLLDYVNAT 1019 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A ++ + + + +++DE+ ++Q++ NLLSNA+KFT+ GG V + V Sbjct: 1020 FRPLAVDRGLSFEITVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VKLHVERAP 1078 Query: 398 GRG------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G S+ D G GI ++ + +F Q G GLGL I+ Sbjct: 1079 GEKFSEETLRSADAVVAFSVTDTGIGIPPEKLSVIFEAFQQSDGTTSRKYGGTGLGLSIS 1138 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHEST 489 + I GG+ + S++ G +P+ ++ + +T Sbjct: 1139 REIAGMLGGRIVAESEVNVGSRFTLYVPSHYAGIVPAPDPSDPRAT 1184 >gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 769 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 131/253 (51%), Gaps = 15/253 (5%) Query: 226 AELEVAKSLSDETRKRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 A + K + E R +A EE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 525 ALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 580 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E KE+ I + + LL L+N+ILDLS+IEAG+ + S ++ + R Q R Sbjct: 581 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 + + ++ +I +++++ + QVI N L+NA KFT G + +G+ G Y Sbjct: 641 KG-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI +P V F + S QG GLGL I Q+I+ N G+ + S+ Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752 Query: 463 REGVEVIAILPNT 475 +G +P Sbjct: 753 GKGSTFWFTIPCA 765 >gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 1035 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|153838024|ref|ZP_01990691.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810] gi|149748558|gb|EDM59417.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810] Length = 806 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E S S + I+ + EK ++ Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449 Query: 350 IFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 + + D+ +RQV+ NLL+NAVKFT G V VT+ I+I Sbjct: 450 FKVTSLVPVGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568 Query: 466 VEVIA 470 Sbjct: 569 TTFTV 573 >gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1364 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A+ N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 676 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG+ + Sbjct: 795 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488 S G E ++ + + + S Sbjct: 855 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 884 >gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 881 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 175/470 (37%), Gaps = 29/470 (6%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82 + + F+ E L + VL+ A I + P + V Sbjct: 1 MEETLRLRQAFEAEEHEL--RLRQSKVACILGIVLIPAGIALDYISYPDQLLSLAAIRLV 58 Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 AA +++ + D + GL + ++ T + Y + Sbjct: 59 AAALIAVIYALHFWDKTTP--------YVRYLTMAGLLIAVASISLIIAMTDGAASTYYT 110 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI-SLAGMLATALSFFT 201 LI ++ L+ A L +++ + ++ H + SL L + Sbjct: 111 GLFLILFAVGVLAPMQPFEATLLCIATLIIYIIGCSVQPEHENTVKSLLNNLYFLVLTCI 170 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + K L A+ E +L + KS+F A++SHELR Sbjct: 171 ISVTAVHFNYRRRFNEFQLKYKLAAQHEELSAL-----------DRLKSQFFANVSHELR 219 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL IL E ++ + E + I + LL L+N+IL L R+E GR L Sbjct: 220 TPLTLILAPVEKLKSDVASLGAPAA--ELLEVIENNALRLLRLVNDILGLIRLEEGRASL 277 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + I + + ++ A K IE+ + AD + ++I N+++NA+K Sbjct: 278 VKKQIDMAHFLSHTTASMKHLAAMKGIELTLSEPQGDLRIDADPDALEKIIGNVIANAIK 337 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT GR+ V G + I D G GI ++P + F Q + QG+GLG Sbjct: 338 FTPPEGRIDVAAAH-EGDMVTVRIADTGIGIPPEQLPHIFDRFYQVDGSATRRHQGLGLG 396 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHE 487 L + + ++ HGG + S G + P + L PE + Sbjct: 397 LALVRELITRHGGDVAVSSDSGRGTTFVLRFPQAAPESQQLAGRPEATPD 446 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 113/287 (39%), Gaps = 35/287 (12%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + L ++NV++ KD L E +L R A L +M Sbjct: 608 FIRAAQLERDLQRTNVEL------KDSLQQLRETEAALVQNARLSA----------LGTM 651 Query: 257 S----HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 + HE+ PLN + ++ + + +T + + DI + ++ ++ + Sbjct: 652 AAGLLHEIGNPLNFMGTALQLAARDPTIQGDPDTA-DTMKDIQAGYDRIHRVVTDLRGFT 710 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 A + + + L+ A + + V+ + + QV+ Sbjct: 711 ---APQKPEHPRPFPIESAIDHA---LRFTAHVQKGINITRDISENGIVFGSQSTITQVL 764 Query: 373 LNLLSNAV---KFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +NL++NA+ + + +++ W G ++S++DNG GI + F Sbjct: 765 VNLIANAIAAVRTVEEKRQPEISISSWIQGNELFVSVRDNGTGIDPKIQSQIFDPFF--- 821 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + K +G+GLGL ++ I+ANHGG ++S L + E LP + Sbjct: 822 -STKDVGEGMGLGLAVSHRIIANHGGSLSVKSSLGDWTEFRFNLPLS 867 >gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 5/250 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E + ++++ A E ++ F A++SHELRTPLN ILG +++ + + Sbjct: 286 ERKNTEL-KSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILRRDLLDKEKPIDKG 344 Query: 289 EYIGDI---HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I +I ++ LL LIN ++D ++++AG +E+ +++ +V E + + Sbjct: 345 KIINNIDIERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVVEEITLSVAGYIIN 404 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 NI + D + D + +++LNLLSN +KFT G + V + + +S+ Sbjct: 405 NNINLIFDTDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVNI-FDGEEYITLSV 463 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI E ++ + F Q + +G G+GL + +S++ H G + SK G Sbjct: 464 EDTGIGIPEEKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMHDGTISVESKYGVG 523 Query: 466 VEVIAILPNT 475 + LP Sbjct: 524 TKFTIKLPVK 533 >gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248] Length = 609 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + N E ++ ++ Sbjct: 370 EKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEETDRMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--EKNIEIFQKIDPSLSS 360 +IN++L+LSR+++G L ++ +++ + + + +KN +I ++ Sbjct: 428 RMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLW 487 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+L+NA+K++ GG + + T SI D G GI + ++ V Sbjct: 488 VELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVFSISDQGLGIPKKDLGKV 546 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A A+ G GLGL I++ ++ H G + S EG LP Sbjct: 547 FERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPYEPYEE 605 >gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1626 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 11/309 (3%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + + + + + + + I + ++ A Sbjct: 834 EPYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEA 893 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + N AKS FLA+MSHE+RTP+NA+LG ++++ + + Y+ + + LL Sbjct: 894 DTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV----QQQGYVTKAQTAAKSLL 949 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 L+N+ILD S+I+AG+ +L S+ ++R+ ++L ++E+ +D +L + Sbjct: 950 GLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWL 1009 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGRGQY--ISIKDNGPGIAEGEIP 418 AD+ ++Q+++NL NA+KFT G + + SI D+G GI+E +I Sbjct: 1010 LADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIE 1069 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTR 476 + T F Q + G GLGL I++ ++ GGQ + SK+ G P Sbjct: 1070 RIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVME 1129 Query: 477 VLNFIPEDN 485 V P + Sbjct: 1130 V-EANPRAD 1137 >gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] Length = 612 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +SI D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 854 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 9/243 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +E ++ AE ++AK RFLA+MSHE+RTPL +I+G++E ++ E + K+ + Sbjct: 339 RQQLEEAKEEAEYHSMAKQRFLANMSHEIRTPLQSIIGYAEALKNE------EKPRKQDL 392 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +H + +HLL L+NE+LD SRI + R+ E S+ ++ E + +L+ A K + + Sbjct: 393 ETLHSASEHLLYLVNEVLDYSRIISDRFTFEERVFSINPLLNEVVQVLRPTALSKGLILR 452 Query: 352 QKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS--IKDN 408 + + D +RQV+ NLL+NA+KFT G V G +G I I D Sbjct: 453 LENSLKPNLYLHGDPFRLRQVLYNLLTNAIKFTENGEVVLKVTGHETGNAAKIEYQISDT 512 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++ ++ + F Q +I+ G GLGL I ++++ G + SK EG Sbjct: 513 GIGLSADQVERIFNQFEQADPSIQRKYGGTGLGLSIVKALVEGMSGNIHVTSKPGEGTTF 572 Query: 469 IAI 471 Sbjct: 573 FVT 575 >gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB] gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB] Length = 1026 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 136/292 (46%), Gaps = 32/292 (10%) Query: 225 IAELEVAKSLSDETRKRAEE------------------ENLAKSRFLASMSHELRTPLNA 266 I E + A++ R+ EE N AKS FLA+MSHELRTP+NA Sbjct: 605 ITERKQAEAELKRHRENLEEQVNARTADLLLAKEAAEAANRAKSTFLANMSHELRTPMNA 664 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G + ++ N + +E + + + HLL+L+N+ILDLS+IEA R L + + Sbjct: 665 IIGMTHLLIRG----NENASQREKLAKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPL 720 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTA 384 + DIV I M + K ++ Q+I P L + D +RQ++LNLL NA+KFTA Sbjct: 721 RISDIVANAISMAGEKIAAKGLQFNQQISPQLVTTELIGDPLRLRQILLNLLDNALKFTA 780 Query: 385 IGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G + ++ T ISI+D G GI + + F Q + G GL Sbjct: 781 Q-GSISLSASVTDETSENLTIRISIEDTGTGIPDEAKDRIFAPFEQVDGSTTRQHGGTGL 839 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GL I + ++ G+ + S G R+ + H++T + Sbjct: 840 GLSIVKQLIHLMHGKIEVSSTPGIGSCFTLT---ARLDKAPSKPRHQATPER 888 >gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str. 301020] Length = 576 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565 >gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 593 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 6/311 (1%) Query: 165 LSFFPVVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 V VAL Q + + AG A L ++ + + ++ Sbjct: 287 AVALGVPVALVHQRLTAQRMTVVGGAAGACAATLGLALLVSRAYGRRRSAEGEVRRAREA 346 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 ++ E ++ AE N AKS FLA+MSHELRTPLNAI+GF++V+ GP Sbjct: 347 VLIEQRRR---LQSEKELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGP-A 402 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + EY+ IH+SG+HLL+L+NE+LD+++IEAGR EL + I+L D + +C+ +++ A Sbjct: 403 PPKHAEYLTAIHQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALA 462 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQY 402 K + + V AD MRQ +LNLLSNA+KFT GG V + G Sbjct: 463 LRKGVTLTGDAIAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTV 522 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I+++D+G G+ E+ + F Q + AE G GLGLP+A+ + HGG + S+ Sbjct: 523 ITVRDSGIGMNAEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRP 582 Query: 463 REGVEVIAILP 473 G V LP Sbjct: 583 GAGTTVTIRLP 593 >gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513] gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94] gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1] gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1] gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94] gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 1035 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 675 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 157/384 (40%), Gaps = 31/384 (8%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-- 168 + GL ++ Y Y L +A+ N L A+ S Sbjct: 32 CIPVFLRGLGCATAVVLLRDEQDDFYTPSYI-------LPRAAVRNNYLHQAINHSLECL 84 Query: 169 ----PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEK 221 P+ V L ++ ++ A L L + + L+ Sbjct: 85 INHEPLPVPLRYFESAGLYYYAWAIQDFGALLLGRSAPFREGLLREMEPLVNKLALALTS 144 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L++A+ + R A+ N AKS FLA+MSHE+RTPLNA++ SE++ + Sbjct: 145 CRQYQRLKLAQQSMIQARDEAQAANKAKSHFLATMSHEIRTPLNAVINLSELLLETQL-- 202 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ ++ + G+ LL L+N++LD SRIEAGR EL ++ L D++ + + Sbjct: 203 --DDRQRKLTQGVCEGGRSLLQLVNDVLDFSRIEAGRLELVTTSFRLHDLLDGLASLFEK 260 Query: 342 RAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K + I P + V A D +RQ++ NLL+NA+KFT G V + V + Sbjct: 261 EAVIKKLHFGLSISPDVPDVIAADPSRLRQILQNLLANAIKFTEK-GSVSIAVRMLAANQ 319 Query: 401 Q---------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 Q I D G GI+E + + F Q + G GLGL IA ++ Sbjct: 320 QKPPDSVPMMIFHISDTGIGISESDQQRLFQEFSQVDTNLDRRFGGSGLGLAIAARLVML 379 Query: 452 HGGQFLIRSKLREGVEVIAILPNT 475 GG+ S G LP Sbjct: 380 MGGKIGCHSVAGIGSTFWFTLPAK 403 >gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5] gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5] Length = 459 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 138/310 (44%), Gaps = 16/310 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ Q I + + ++ IT ++ K VK+ ++++ + Sbjct: 154 ITVQFGEMRIFFSIIMVIAILLSILLVGIITRYIVKPIVKLTEATQSVAQGQYDIKLNVT 213 Query: 234 LSDETRKRAE----------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 DE + A+ + + F++++SHE+++PL +I GFS+ ++ + + + Sbjct: 214 RRDELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRL---S 270 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E + Y+ I + + L ++L L+ ++ L +S + + +++ + Sbjct: 271 EEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVL--FHTEW 328 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ ++ + + V+ D++ + QV NL++N++KFT G + + V I Sbjct: 329 SWRSKDLTIDMSLPPTYVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRV-IEHNTQCRI 387 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I D G GI +P + F + A +E GLGL I Q I+ HGG+ + S+ Sbjct: 388 EISDTGIGIPPEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPG 447 Query: 464 EGVEVIAILP 473 +G ILP Sbjct: 448 KGTTFTVILP 457 >gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 900 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 11/278 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + A L A ++ R+ AE + AKS FLA+MSHE+RTPL +LG+++++ ++ Sbjct: 484 TARRKAEAALAEAHRIAQVARREAEAGSAAKSEFLATMSHEIRTPLTGVLGYADLLTAQS 543 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ +G I +G+ LL +++++LD S+IEAG L S +V E + + Sbjct: 544 ---DLAPEHRRLVGRIRSAGEALLTIVDDVLDFSKIEAGEITLDPKPFSPAQLVDEALAL 600 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ A K + + +IDP++ + D +RQV+LNLL+NAVKFT G V VTV Sbjct: 601 VRAAADRKQLALSARIDPAIPERLVGDVGRLRQVLLNLLNNAVKFTRA-GSVTVTVACEP 659 Query: 398 GRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 I + D G GI E + + F Q +I+ +G GLGL I++ ++ Sbjct: 660 AGPDAQDCPIRICVTDTGIGIPEEKRGRLFQRFSQVDGSIQRHYEGTGLGLAISRRLIEA 719 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G+ + S+ EG L +V ++ E+ Sbjct: 720 MNGRIDVDSRAGEGSTFWFALKLAKVPLEPSKEAEETA 757 >gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1184 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 7/297 (2%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + +S++++ A + L + L+ R +AE N K F Sbjct: 760 LGVISFICAESGHKYDQSSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEF 819 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA +SHELR+PLN ILG+S ++ + + P + + I R+ + LI ++LD+S Sbjct: 820 LAVLSHELRSPLNPILGWSRILRTKQLSPTKVDQ---ALETIERNAKLQAQLIEDLLDVS 876 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 RI G+ L+ + ++L + + +QL A+ KNI I + P +V D+ ++QVI Sbjct: 877 RILQGKMTLNVAPVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQNRLQQVI 936 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLLSNAVKFT GG++ V + + I +KD+G GIA +P V F Q A Sbjct: 937 WNLLSNAVKFTPSGGQIEVQLAQVNL-YAQIQVKDSGKGIAREFLPYVFEYFRQEDGATT 995 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE--GVEVIAILPNTRVLNFIPEDNHE 487 G+GLGL I + HGG + S L + G LP V +P D+ + Sbjct: 996 RKFGGLGLGLAIVRHFTELHGGTVHVSS-LGQDLGATFTVRLPLNLVEQELPADDEQ 1051 >gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053] gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053] Length = 885 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 10/262 (3%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ E AE N AKS FL+ MSHE+RTPLNA++G + + P ++ Sbjct: 351 SRQALQEAMLAAENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAAASVSDP---ARVEDC 407 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I S +HLL LIN++LD+S+IE+ + L + +IV + + +A+ K+I Sbjct: 408 LTKITFSSRHLLMLINDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQAKSKDIVF 467 Query: 351 FQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YIS 404 + ++ + D + Q+++NL SNAVKFT GG +H+ V Q Sbjct: 468 EETMEGFGKDTVFIGDSLRLNQILMNLSSNAVKFTPPGGSIHLDVSRYKKGNQADVIRFV 527 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G G+ + + + F Q +I G GLG+ I ++++ GGQ + S+ Sbjct: 528 LKDTGIGMTKEAVGRIFQPFEQADASIAKRYGGTGLGMSITRNLITLMGGQIQVESEPGL 587 Query: 465 GVEVIAILPNTRVLN-FIPEDN 485 G I LP + +PE + Sbjct: 588 GTAFIVDLPFEKGEENQMPEPD 609 >gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] Length = 957 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 14/259 (5%) Query: 226 AELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +L+ A + +E R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ E Sbjct: 440 HQLQKANARLNEEVLNHAQARLQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDEG 499 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + N Y+ I+RSG LL ++N++LD S+IEAG E+ +L +V + + Sbjct: 500 L----NSQQSRYVDVINRSGSTLLAILNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQL 555 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396 L RA EK +E+ I+ +++ W D + QV+ NL+ NA+KFT G ++V Sbjct: 556 LSGRAAEKQLELSALIESDVTTFWKGDVTRISQVLNNLVGNAIKFTDSGHVDIYVANDPE 615 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + D+G GI+ E + +F Q S + S G GLGL I++ I+ GG+ Sbjct: 616 RAGHVLFEVSDSGIGISPKEQKNLFDAFTQASGGLSSK-GGTGLGLAISKKIVEAMGGEL 674 Query: 457 LIRSKLREGVEVIAILPNT 475 + S L +G +P Sbjct: 675 QVDSDLGKGSRFWFSIPLE 693 >gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 701 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 13/280 (4%) Query: 213 KILSCQAEKDDLIAEL-EVAKSLSDET--RKRAEEENLAKSRFLASMSHELRTPLNAILG 269 E + E+ A D +A+ N AK FLA +SHELRTPLN I+G Sbjct: 291 SNRRLTTEDLAIAEEIGRRAAQAVDNAWLYHQAQIANRAKDDFLAMLSHELRTPLNPIIG 350 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + E++ + P E K+ + I R+ + +LI ++LD+SRI G+ L + ++ L Sbjct: 351 WCELLNRGNLSP---EQTKQAVEIIDRNAKLQSHLIEDLLDVSRILQGKLHLQKCSLDLK 407 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 I+ I +QL A++ ++ I K+D + + D + QV+ NLLSNA+KF+ V Sbjct: 408 TIILSAIETVQLMAKKSSVTIETKLDTDVHPISGDITRLHQVVWNLLSNAIKFSPSHSTV 467 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V++ I IKD G GI +P + F Q + G+GLGL I ++++ Sbjct: 468 TVSLSAV-DGMALIEIKDQGKGIEPEFLPYIFDRFSQSESSKNRDYGGLGLGLTIVRNLV 526 Query: 450 ANHGGQFLIRS-KLREGVEVIAILP-----NTRVLNFIPE 483 H G+ S + +G P V + P+ Sbjct: 527 EMHDGKIKADSLGINQGATFTVAFPILYEDKKTVTDEEPK 566 >gi|86146520|ref|ZP_01064843.1| sensor histidine kinase [Vibrio sp. MED222] gi|85835783|gb|EAQ53918.1| sensor histidine kinase [Vibrio sp. MED222] Length = 818 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 13/277 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ + Sbjct: 314 EIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 373 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++++ ++ SG H++ L+NEILD S+IE GR +L E+ L I+ + Sbjct: 374 ST----EQEKHLKSLYDSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 429 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + EK ++ + PS ++D+ +RQ++ NLL+NAVKFT+ G V V + Sbjct: 430 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSR-GFVEVYLKEVVE 488 Query: 399 R---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I ++D G GI++ + F Q + G GLGL I + I G Sbjct: 489 GSDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGS 548 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S+ G L ++ P + ES +K Sbjct: 549 ISVTSEEGIGTSFDVRL---KIKPCQPGEI-ESLPHK 581 >gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 883 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 125/236 (52%), Gaps = 2/236 (0%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R E + K+ +A+ SHELRTP+ +I GF +++ L T G ++ T +E + I + Sbjct: 647 REEIADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVS-ATQREPLRVIKNNVVR 705 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L+ LI+E+LD+SR+EAG L + L +++R+ I +L + +E+ IE+ L Sbjct: 706 LVVLIDELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPH 765 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V AD + + Q+ +NL+ NA K+T GG V + + + ++D G GI+E + Sbjct: 766 VVADRQRIEQIAVNLIGNACKYTPRGGTVWIGM-HNGNGELRVDVRDTGVGISEEAKSHI 824 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 T F + ++ G GLGL I Q ++ HGG+ S++ G +LP Sbjct: 825 FTPFYRADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLPIKP 880 >gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22] gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1793 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + +LV G L E L + T+L + ++ Sbjct: 1160 FRPGEALVGTAAKEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELA 1219 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITYH 206 + + F FL+ ++A S I ++ L L Sbjct: 1220 SFTPFTQIQKDFLNQIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSDELENRQEA 1279 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 L SN ++ ++EV + +E R+ EE KS FLA+MSHE Sbjct: 1280 LQASNAELEEKAELLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1339 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1340 LRTPLNSLLILAKLLADNAESNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1398 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1399 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1458 Query: 379 AVKFT----------AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V V + S+ D G GIA ++ Sbjct: 1459 AVKFTDSGAVELVIRPAGADVPVAIKEQLLEAGSLRDADADMIAFSVTDTGIGIAASKMR 1518 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1519 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPL 1574 >gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus DSM 19965] gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus DSM 19965] Length = 650 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 242 AEE-ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + F A++SHEL+TPL I GF+E+I + E K + IH+ + Sbjct: 339 AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDIKNFSNKIHQESRR 396 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 +L+LI+ I+ LS+IE +S +S+ +++ ++ +A +K+++I I+P Sbjct: 397 MLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEP--VY 454 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++ + + ++ +NLL NAVK+ GG + V + + I+I D G GI E + V Sbjct: 455 MYGNAALLSELFMNLLDNAVKYNVEGGNITVHIKRVKEKLMKITISDTGVGIPEEKQNRV 514 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + + A G GLGL I + I+ H G+ I S +G V A LP Sbjct: 515 FERFFRVEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVTAELPCLSDEEI 574 Query: 481 IPEDNHEST 489 + E+ E T Sbjct: 575 LRENATEIT 583 >gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1823 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 165/403 (40%), Gaps = 37/403 (9%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV + G L E L + LL + +++ F FL+ Sbjct: 1176 KRPILVENVPPGYLKIASGLGEAAPAHVIVLPVLFEGQLLGVIELASFQPFAQIQKDFLN 1235 Query: 167 FFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 ++ S I ++ L + + + + D Sbjct: 1236 QIAEMIGTSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKSDR 1295 Query: 224 LIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 L + EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1296 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1355 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1356 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1414 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + EK ++ ++ P L ++ DE+ + QV+ NLLSNAVKFT GG V + Sbjct: 1415 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFT-DGGAVELV 1473 Query: 393 VGWT---------------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + S+ D G GIA ++ + +F Q Sbjct: 1474 IRPAGVDVPNAIREQLLEHGALRDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTT 1533 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ S+ G LP Sbjct: 1534 SRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1576 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 9/276 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L +S + I+E + + + AE N AK RFLA +SHEL Sbjct: 305 VAMRSSLIRSANGEPTAICGIARDISEQKSRHEELMKAKLAAESANSAKDRFLAMVSHEL 364 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN I+G++E++ + P+ + ++ I S + + +L+++ILD S IE+GR + Sbjct: 365 RTPLNPIVGYAEILAAKIEDPMA----QRFLKIIKESAKGMASLVSDILDYSMIESGRID 420 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 + + D++ ++ A E+ +I +D V AD++ + QV+ NL++NA Sbjct: 421 IEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLVANAC 480 Query: 381 KFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G++ ++ + I + D G GI E E+ T+ F Q K+ + Sbjct: 481 KFT-QNGKILISSSASQTSKEAYSVRIEVSDTGIGIPESELETIFEPFEQLGSVHKAETR 539 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GVGLGL I + ++ GG + S+L G L Sbjct: 540 GVGLGLAICRQLVGALGGTISVSSQLGSGTIFTVDL 575 >gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1823 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 168/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + +L + +++ + F FL+ Sbjct: 1206 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVIELASFTPFTQIQKDFLN 1265 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDL 224 ++A S I ++ L + + + EK +L Sbjct: 1266 QIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKAEL 1325 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A+ EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1326 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1385 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + L E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1386 LADNADSNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1444 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT--------- 383 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT Sbjct: 1445 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVI 1504 Query: 384 -AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 G V V + S+ D G GIA ++ + +F Q Sbjct: 1505 RPAGRDVPVAIREQLLEAGSLRDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 1564 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1565 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1606 >gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum K10] Length = 885 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 125/251 (49%), Gaps = 8/251 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++AE+ N AKS FL+ MSHE+RTP+N I+G +I ++ +G ++ ++ I Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNLG--DSSRVEDCI 399 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ S +HLL LINE+LD+S+IE+GR E+ + ++ +A++K + Sbjct: 400 RKINLSSRHLLTLINEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFD 459 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 + ++ D + Q+++NLLSNA+KFT GG + + + + Sbjct: 460 VIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKLDEDSTTVWLKFEVS 519 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI E + F Q I G GLGL I++ G+ + S++ +G Sbjct: 520 DTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGS 579 Query: 467 EVIAILPNTRV 477 +P RV Sbjct: 580 TFTLTMPFGRV 590 >gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 609 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + +F+A++SHELRTPL + + E + + + +I + + ++ Sbjct: 371 EKIDRERRQFVANVSHELRTPLTTMKSYLEALGDGAW--QDKDIAPRFIQVVQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ I+ + I +L + NI +KI + Sbjct: 429 RLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELT-KSDNIRFVRKIPREAIFIE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG + V + +S+ D G GI + ++ + Sbjct: 488 VDEDKITQVLDNIISNALKYSPQGGTITFRVRELAD-EIIVSVSDEGVGIPKADLAKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG SK +G + LP R Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGTIWAESKEHKGTTIYFTLPLER 600 >gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] Length = 1045 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 9/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 662 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADTEEQEEKE 721 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI I + LL L+ +IL+LS+IE+G E S + L + +E QLR + Sbjct: 722 ----EYINIIENNNTLLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQK 777 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + I + +V + + QV+ N+L+NA+KFT G V Y Sbjct: 778 NEAVPIRYIPEMPDCTVNIERNRLTQVMTNMLNNAMKFTYS-GSVTFGYRLKDTDSLYFY 836 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + TV F + S QG GLGL I QS++ N GG + S+ + Sbjct: 837 VTDTGCGIEEDKKDTVFGRFVKLD----SFSQGTGLGLSICQSVVENLGGSIGVESEPGK 892 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP V + E Sbjct: 893 GSTFWFTLPYHPVELKSTREQKE 915 >gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRGSIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 946 LVTLMGGRMWVESDVGKGSVFYFT 969 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLASMSHE+RTPLN ++GF +++ + ++ ++ S LL+LIN+IL Sbjct: 595 STFLASMSHEIRTPLNGVIGFLDLLHTTKL----DDQQGRFVELAKSSASSLLHLINDIL 650 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368 DLS+IEAG EL ++ L D++ M + + +E+ + + D + + Sbjct: 651 DLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERI 710 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQYISIKDNGPGIAEGEIPTV 420 RQV++NL +NAVKFT GG V++ V S++D G G+ ++ + Sbjct: 711 RQVLVNLFANAVKFTETGG-VYLRVERERSVASSHDAIARIRFSVEDTGIGVPRSKMQRL 769 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +F Q + + G GLGL I + ++ GG+ + S++ +G LP + Sbjct: 770 FKAFSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVESEVGKGSTFWFTLPLQAIERS 829 Query: 481 I 481 Sbjct: 830 T 830 >gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 409 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 2/233 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + F+A++SHELRTPL+ I G++E + + ++ I R L Sbjct: 172 RLEAVRKEFVANVSHELRTPLSVIKGYAETLIDGGPD-MPPAQRDRFLHIIRRHTDRLNT 230 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ ++L LSR+E+ L L +V+ + + R + + + + Sbjct: 231 LLEDLLTLSRLESPNTGLRREPGDLDRLVKTLLDEYRTRPAAARHTLQLTLGAAPGPLNF 290 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV NLL NA+K+T G R+ + + G I + DNGPGI ++P + Sbjct: 291 DALKLTQVFHNLLDNALKYTPPGSRIDIAIRP-KGSEIEICVSDNGPGIPVADLPHIFER 349 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + G GLGL I + I+ HGG+ + S+ G LP Sbjct: 350 FYRVDKGRSRETGGTGLGLSIVKHIVQLHGGRVWVESEPGRGASFHFTLPAAP 402 >gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855] gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8] gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855] gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8] Length = 1155 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 8/314 (2%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGML--ATALSFFTYITYHLFKS----NVKILSCQAEK 221 P A Q + + +V + + ML + F + + V +L ++ Sbjct: 836 LPPDAAGLRQRLEAGNVQSLLVLPMLNDQDLIGFVGFDAVRQQRDWDADTVMLLRVLSDA 895 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + A+ ++ AE+ N KS FLA+MSHE+RTPL +I+GF+E I E Sbjct: 896 ISNALQRKTAEKEMLAAKEEAEDANRMKSVFLANMSHEIRTPLTSIIGFAEAIGDELGDE 955 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + I +SG LL ++ +L+LS++EAG +L+ ++L E Sbjct: 956 TAGPVLR-FAQLIEKSGNRLLETLDGVLNLSKLEAGEMDLTIEPVNLAVQTAETADQFAP 1014 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +AQ I + +D + ADE + V+ NL+SNA+K+T GG V V V +G Sbjct: 1015 QAQASGISLHTDLDDAPVWARADEGAVHIVLRNLISNAIKYTNEGGEVEVQV-RDAGTAA 1073 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++I+D G G+ ++ + +F Q S + +G GLGL + + + + G + ++ Sbjct: 1074 VMAIEDTGIGMNPEQVTDLFEAFRQASEGLGREYEGTGLGLAVTKQAVDHMNGSIDVETE 1133 Query: 462 LREGVEVIAILPNT 475 G + LP Sbjct: 1134 KGVGTRFVVRLPTA 1147 >gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 576 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGNM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFARTG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VIEGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565 >gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33] gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 1035 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19] gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292] gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName: Full=PleC-divJ homolog sensor gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19] gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 1035 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1800 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + +L + +++ + F FL+ Sbjct: 1175 KRTILVENAPTGYLKISSGLGEAPPAQVIVLPVLFEGKVLGVVELASFTPFTAIQKDFLN 1234 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I + L K+ + EK +L Sbjct: 1235 QIAEMIATSVNTISVNTKTERLLKQSQELTEQLRERSAELEQRQKALQASNAELEEKAEL 1294 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1295 LARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1354 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1355 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1413 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G + + Sbjct: 1414 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1473 Query: 392 TVGWTS-------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 S+ D G GIA ++ + +F Q Sbjct: 1474 RPARDDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTS 1533 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1534 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1575 >gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM 12042] gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM 12042] Length = 1500 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + + +A+ +++A K + +AEE N AKS FL++MSH++RTP+NAI+G Sbjct: 1076 HQTVCLVRADVTEMLAAERRTKKTLENALIQAEEANRAKSDFLSAMSHDIRTPMNAIMGM 1135 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + + +G +++ + + I S +HLL+LIN++LD+S+IE + L+ + + + Sbjct: 1136 T-ALATAHLG--DSQRVADCLKKITYSSKHLLSLINDVLDMSKIERSQITLNRVRLRMPE 1192 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + ++ +A+ K I++ + +V + D + Q+++N+LSNAVKFT GG + Sbjct: 1193 VIEQLAAIMGPQARIKAIQLNISANQIEHTVFYGDALRINQILINILSNAVKFTPEGGTI 1252 Query: 390 HVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V G Q +I+D G GI + + F + + +G GLGL I Sbjct: 1253 DFIVEEIPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFAR--SSQVGQIEGTGLGLSI 1310 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + ++ G + S++ +G + L LN P+ Sbjct: 1311 TRGLIELMNGSLQVESQVGQGSTFVIELACEPELNGNPD 1349 >gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 1000 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 14/407 (3%) Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIG--EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 W ++ A + + + ++TL Sbjct: 603 WGGAPASLLALRRLPEEDPARHLRAAELERARQEARLRESEAVLDAVTDGVVTL----DE 658 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVF-LSFFPVVVALSTQAIMSMHVLDISLAG 191 + + K A L +S L + AL +++ G Sbjct: 659 RGRVIALNKGAAALFGHEPREVSGEDLTVLFAQDGRPAIRAALERARAGEPASTEVAAEG 718 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + +L ++ ++ ++ AE + KS Sbjct: 719 GEPILALTLAPLAQEEPRRFSVLLRD-------VSAARRTEAELLRAKRAAEAASSQKSD 771 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHE+RTPLNAILGF+EV+ E GP+ NE Y++Y+ DI SG+H+++L+ ++LDL Sbjct: 772 FLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRSSGEHVVSLVTDLLDL 831 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 ++IEAG +L + + L D+V + ++Q +A + + + L V D++ +RQ Sbjct: 832 AKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVRTSFANGLRPVLGDQRSLRQA 891 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 LNL++NA+KFT GG+V V+ T G + ++D G G+ E+ T L F Q + A Sbjct: 892 ALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEVETALQPFRQVATAQ 951 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 +G GLGLP+ ++++ + G + S+ EG V + P RVL Sbjct: 952 NRRGRGTGLGLPLTKALVEANRGTLRVSSRKHEGTLVEVLFPPARVL 998 >gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 919 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 153/360 (42%), Gaps = 14/360 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISAL--SNFMLPYAVFLSFFPVVVALS 175 G+ + + W +LL+ S+ A+ + A ++ + Sbjct: 151 GIVVGTIAIHADIAWLRGLYLHNLLISLLVGASVLAVTVLVAWVRIARIINPLRALAGEF 210 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + Q ++ L + + + Sbjct: 211 ADIGERSDLSKRLRVVSNDEVGVLSGAFNDMFARIDERDRLLQRHRETLEDTVTLRTAEM 270 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + AE N AKS FLA++SHE+RTP+N +L +E++ Y + I Sbjct: 271 RSAKDEAERANAAKSEFLATVSHEIRTPMNGMLVMAEMLS----AAPIPSRYLRHAEIIL 326 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RSG+ LLN++N+ILD+S+IEAGR +L E +S+ +V + + +A+EK++ I ID Sbjct: 327 RSGRGLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREKSLSIATMID 386 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDN 408 + V D + QV+ NL++NA+KFT GG V + V + +I+D Sbjct: 387 VDVPAEVIGDPVRISQVLTNLVNNALKFTETGG-VTIAVECVAAEDAGGPPMLGFTIRDT 445 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++ + F Q I G GLGL I++ ++ GG + S+ G Sbjct: 446 GIGIPADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRVTSEEGVGSCF 505 >gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1170 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + + D EL +A+ + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G S++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + A GG + S +G +LP V E Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731 >gi|332534411|ref|ZP_08410251.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036145|gb|EGI72620.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 786 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 10/272 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + ++ + +++A+E + K +FLA+MSHE+RTP+N I G + + Sbjct: 391 NIQIREQVAKQTHTLRKEKQKADEASHIKGQFLANMSHEVRTPINGIKG----LHYLALQ 446 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + + YI + LL ++N++LD S++EAG+ +L + I++ + E + +LQ Sbjct: 447 QNDWQQARSYIEQADGALGVLLRVLNDVLDFSKMEAGKLDLMQEPINVASLADEMLNLLQ 506 Query: 341 LRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A K+I++ D S + D ++QV+LNLL+NAVKFT G + + + W S + Sbjct: 507 FEADIKSIKLSLDFDKTSNLVINTDPIRLKQVLLNLLNNAVKFTGE-GEITLKI-WQSKK 564 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 Y SI D G GI+ + F Q + G GLGL I + ++ GG + Sbjct: 565 MTYFSINDTGIGISSEAQKQLFKPFAQADSSTSRQYGGTGLGLSICRKLVELMGGAIDLV 624 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S +G LP ++ +P+ QY Sbjct: 625 SYEGKGSTFTFSLPL---ISPLPKAEQIQQQY 653 >gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 571 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F+ + SHEL+TP+ A+ GFSE + M + E K+++ + Sbjct: 341 RRLE---KVRTDFVTNASHELKTPVTALKGFSETLLDGAM--EDKEVLKQFLEIMLAESS 395 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N+IL+LS++E + ++ ++L + V +++ A EK +++ + Sbjct: 396 RLDFLVNDILELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLI-EEDTL 454 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D ++Q++ NL++NAV +T G V VT+ + + + + DNG GI E E Sbjct: 455 FITVDSSRLKQILANLINNAVVYTQDSGEVTVTIRKENNQAVIL-VSDNGIGIPEDEQDR 513 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A G GLGL I + ++ N G + SKL G I LP Sbjct: 514 IFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGSIAVESKLGLGTTFIVRLP 567 >gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 1036 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 770 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 829 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 830 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 889 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 890 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 949 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 950 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1009 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1010 AQFAIDSNPGQGTVVEIVFPPTRVL 1034 >gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870] gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68] gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] Length = 1035 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] Length = 612 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + N ++G I + ++ +IN+ Sbjct: 373 EQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQ--FLGVIQNETERMIRMIND 430 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---IFQKIDPSLSSVWAD 364 +L+LSR++ G ++ ++L D + + + + ++ I + V D Sbjct: 431 LLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEID 490 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QVI N+++NA+K++ GG + + + T +SI D G GI ++ + F Sbjct: 491 TDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKH-VILSISDQGLGIPRKDLSRIFDRF 549 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + A + G GLGL I++ I+ H G+ S G +P ++ Sbjct: 550 YRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEE 605 >gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf] gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf] gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 543 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 150/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 248 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 303 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 304 AVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 363 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 364 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 423 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI +I + F Q ++ ++G G+GL + +S + Sbjct: 424 YVTVK-DFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 482 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P + ++N+ Sbjct: 483 NMHEGTIDIQSEIGKGSEFIINIPVKLEKEDLEKENN 519 >gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 1088 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 100/466 (21%), Positives = 180/466 (38%), Gaps = 24/466 (5%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82 LG E++ ++ L + + + + +++ L + Sbjct: 198 LGTADQLIASRSSELVQDFIQ-----FGALGMMAVYHLFLFALRRNDRTTLNFAIFCLCM 252 Query: 83 YAANLSLGKKV--MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 L + + E++ +L V L + L + Sbjct: 253 AVRALLVNSRYILDVFPGMSFELFAKLSYLTVYAGFYFLVAYVHELFPTLFSSFVRKGYG 312 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 LLIA S+ L+ + + A+ A +++ +G L F Sbjct: 313 LFTLLLIA-SVLVLNVQGYDHLLIPFEILTAAAVLYSAFIAVRAAKQRQSGALLLIGGFM 371 Query: 201 TYITYHLFKSNVK-------------ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 + + ++ +L + L + A ++ +R + Sbjct: 372 VIFATGVSDAFMRKAGHFPALLSTGVLLFAFLQSLLLSMKFSKAFRQVEQLSERLLSLDK 431 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K FLA SHELRTPL+ I+G +E + G + ++ I SGQ L +L+N+ Sbjct: 432 LKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENGHLQLIRSSGQRLAHLVND 491 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILD S++ +L I++ IV + +L+ A+ K + + ++ P+L V ADE Sbjct: 492 ILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLLLINEVPPAL-QVRADENR 550 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + Q++ NL+ NA KFT G V ++ + + I+IKD G GIA+ + + SF Q Sbjct: 551 LHQMLHNLVGNATKFTLQ-GHVVISARKQARQ-ITINIKDTGIGIAQESLGVIFESFEQL 608 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 S G G+GL I + ++ HGG+ S G LP Sbjct: 609 DPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFSFTLP 654 >gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1364 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 11/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A+ N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL----P 675 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 676 GAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG+ + Sbjct: 795 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHES 488 S G E ++ + + + S Sbjct: 855 ESVPGRGSEFYFVITLEKSAPPQEQRDLPS 884 >gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2] gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2] Length = 468 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 12/328 (3%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT----ALSFFTYITYH 206 + + +P A L A M V+ I L ML L H Sbjct: 145 LQGIIYLYVPLAKISEITQDFAYLWFAAAMIFTVISIILGTMLVKKLTKPLLDMKDAADH 204 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K I KD++ +S +K E+ K FLA++SHELRTP++ Sbjct: 205 VSKGYYDIHLNIDSKDEIGQLANAFNHMSSSIQKEDEK----KKDFLANVSHELRTPISY 260 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 + G+SE + E + E ++Y+ I R + + L+ ++LDLS++E+ Y+L + + Sbjct: 261 VKGYSEALISEM--AESEEDRQKYLQLILRESKRMERLVGDLLDLSKLESDEYKLEKMPL 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L ++ + I + +EKN+++ ++DP + + DE + Q+I N++ N++++TA Sbjct: 319 PLGQLIEDAIEKYKPILREKNLDLQYRLDPEVI-INGDEGRIEQIIQNIMDNSIRYTAE- 376 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 GR+ + + I I+D G GI+E + + F + + ++ G GLGL IA+ Sbjct: 377 GRISIRLSQEKEDKCVIEIEDTGIGISEEHLSKIKQRFYRVNKGRTRSDGGTGLGLAIAE 436 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ H G+ + S+L +G V +LP Sbjct: 437 KLVKLHQGELTVLSELNKGTTVRIVLPL 464 >gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] Length = 591 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E +R E + F+A++SHELRTP+ + G+SE I + + E E++ Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ L L+NE+LDL+R+E+G EL + + V + Q A++K +++ Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D M QV+ NL+ NA++ T GG V + V T G ++D+G G Sbjct: 466 VDFQSPIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 I E +IP + F + A ++ G GLGL IA++I+ H G+ + S + EG Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSV 584 Query: 471 ILPNT 475 LPN Sbjct: 585 YLPNR 589 >gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1229 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 10/314 (3%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 +A+ + + + + + + + ++ Sbjct: 433 RALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTGINRDVTLEREREAWLS 492 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + + A+ N AKS FLA+MSHE+RTP+NAILG ++I+ + N +Y Sbjct: 493 QAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGL----NARQADYADKASS 548 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + + LL ++N+ILD SR+E G+ L+ S+ ++R+ +++ +K++E+ IDP Sbjct: 549 AARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEVLFDIDP 608 Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411 L + AD ++Q+++NL NA+KFT G V + S++D G G Sbjct: 609 ELPDWISADSLRLQQILINLSGNAIKFTER-GEVVIAARLARRDEAGLRIAFSVRDTGIG 667 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA + + F Q + G GLGL I+Q ++A GGQ + S+ +G Sbjct: 668 IAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTVESEEGKGSVFRFE 727 Query: 472 LPNTRVLNFIPEDN 485 + P + Sbjct: 728 VDCAAAEAPKPAVD 741 >gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria monocytogenes 220] Length = 597 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 340 LLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 397 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 398 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 457 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398 A+E +E+ +++ D M QV++NL+ NA++ T G+V + Sbjct: 458 LAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 517 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 R I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 518 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 577 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 578 SVESELGKGSDFIITLPLYK 597 >gi|253578668|ref|ZP_04855939.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849611|gb|EES77570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 640 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 128/269 (47%), Gaps = 11/269 (4%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 AE + K L + A+ N AKS FL S+SH++RTP+NAI+GF+ + + Sbjct: 240 AEEQKQKQLLMTAAEEADAANKAKSAFLLSISHDIRTPMNAIIGFTNI----ALHQNTVS 295 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + + + +S HLL+L+N++LD +RIE+G+ +S + + + ++ Sbjct: 296 DIHDSLEKVQKSSNHLLSLLNDVLDFTRIESGKVTISPEPMDITQLTDNVQAIMNGLLYN 355 Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSGRGQY 402 ++++ + V AD +R+V++NLL NAVKFT GG++ + + + Sbjct: 356 RDLKFEVHREISKNPYVLADVVRIREVLVNLLGNAVKFTKDGGKITLDISSYPGADEKHI 415 Query: 403 IS---IKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLI 458 I+ ++DNG G++E + F Q A +G GLG+ I + + GG + Sbjct: 416 ITRYVVRDNGIGMSEEFQKKLFDPFSQEDDANARTQYKGTGLGMAITKKYVDMMGGSIAV 475 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487 SK G +P I + + Sbjct: 476 ESKKGVGSTFTVEIPLELTEQVIQSEQKQ 504 >gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 730 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 12/286 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLS----DETRK---RAEEENLAKSRFLASMSHELRT 262 S ++++ E + +LE + ++ +K A+ N AKS FL+++SHELRT Sbjct: 318 SENRLIAAFNELETSKEKLEQSNLEIRKGIEKAKKLAVVAQSSNKAKSYFLSNISHELRT 377 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN+I+ ++ + T G L N E + + S +HL +LIN+ILDLS+IE G+ L Sbjct: 378 PLNSIVSLTQALLEGTFGDL-NAKQHENLEIVSESSKHLQSLINDILDLSKIELGKMTLK 436 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + + DI R I M++ A KN+ +I+ L ++ D K +RQ++LNLL NAVKF Sbjct: 437 FAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEVDAKRLRQILLNLLVNAVKF 496 Query: 383 TAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T V + + S ++ D+G GI + + + + F Q ++ +G GLG Sbjct: 497 TKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFSPFTQLDDSLSRHYEGTGLG 556 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 L IA + HGG + S G LP + + E+ E Sbjct: 557 LAIASKFVELHGGGLRVASTPDLGSTFTISLPIEQTKD---EEEPE 599 >gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides vulgatus ATCC 8482] gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response regulator receiver domain [Bacteroides vulgatus ATCC 8482] Length = 1045 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 128/262 (48%), Gaps = 10/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQEKQ 721 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EYI I + LL LI++ILDLS+IEAG E S I L DI+ E + + R + Sbjct: 722 ----EYINIIESNNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTE 777 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 I++ + + ++ + QV+ NLL+NA KFT+ G + + Y Sbjct: 778 SNGIQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQ-GSITFGYKLC-DKELYFY 835 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI ++ ++ F + S QG GLGL I Q+I+ + GG+ + S+ + Sbjct: 836 VKDTGCGIPADKVNSIFGRFVKL----NSFVQGTGLGLSICQTIVEHMGGRIGVESEEGK 891 Query: 465 GVEVIAILPNTRVLNFIPEDNH 486 G +P + Sbjct: 892 GSTFWFTIPYQPAAAENKREEE 913 >gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 539 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 12/271 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + L + ++RK+AE N AKS FLA++SHE+RTPLN ILG ++++ + P Sbjct: 123 ADVTALRERERELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQLMASGDLTPG 182 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 K+ I I SG+ L+ L+N++LDLS+IEAGR+++S L ++R + R Sbjct: 183 ----QKDQIETILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRRMEKLWAPR 238 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A EK + + I+ ++ + D +RQ + NL+SNA+KFT G V V Sbjct: 239 ASEKGLVLTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFTER-GSVRVAARCVPAGEG 297 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + I D G G++ + + F Q + G GLGL I++ + GG + Sbjct: 298 EFDVLVEISDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQLMGGDVV 357 Query: 458 IRSKLREGVEVIAILPNT--RVLNFIPEDNH 486 S+ G R ++ P++ Sbjct: 358 AESEEGRGSLFTLTFRAAEGRRVSEAPQNAD 388 >gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1170 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + + D EL +A+ + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G S++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + A GG + S +G +LP V E Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731 >gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1195 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 7/260 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +E E+E A+ +E ++ + KS FLA+MSHELRTPLN++L ++++ + Sbjct: 498 SEVARKNQEIEKARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNS 557 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L+N+ EY I+ +G LL LIN+ILDL++IE+G + I D+ Sbjct: 558 SGNLSNKQV-EYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERT 616 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 + AQ+K + ++D L ++++D K ++Q++ NLL+NA+KFT GG V + +G Sbjct: 617 FRQVAQDKGLSFSIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGG-VTLRIGLDQ 675 Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 T+ +I D G GI + + + +F Q G GLGL I++ + G Sbjct: 676 INTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLG 735 Query: 454 GQFLIRSKLREGVEVIAILP 473 G+ + S+ +G LP Sbjct: 736 GRLGLVSQPGQGSIFTLYLP 755 >gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1093 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+ + ++ E ++ A++ N AK+RFLA MSHE+RTPLN++LG + ++ + Sbjct: 402 RDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRLLMDTPLTA- 460 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ I SG+ LL L+N +LDLS+IE+GR EL +++S +V + M+ Sbjct: 461 ---EQRDLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVESVLDMIAAT 517 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV--------- 391 A+ K +E+ ++ + V D +RQV++NL SNAVKFTA G + V Sbjct: 518 AERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVITLGQCPLR 577 Query: 392 ----TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +V G +++D G GIA ++ + ++ Q +I G GLGL I++ Sbjct: 578 PGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTGLGLAISKK 637 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 ++ GG+ + S+ G + Sbjct: 638 LVELMGGEIEVESEPGRGSIFRFTI 662 >gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 1038 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 772 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 831 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 832 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 891 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 892 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 951 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 952 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1011 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1012 AQFAIDSNPGQGTVVEIVFPPTRVL 1036 >gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1] gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1] gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 1035 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|88707340|gb|ABD49452.1| two-component-like hybrid sensor histidine kinase 1 [Cryptococcus neoformans var. grubii] Length = 1383 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 797 SLKTKINQMVYNLRESIEKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTL 856 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + + LL +I++ILD+S+IEAGR + + SL V Sbjct: 857 ESELTR----QQRENLMIVSSLAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSV 912 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A + +++ +DP++ + D +RQVI NL+ NAVKFT G+V ++ Sbjct: 913 LKTLCVKAAQNKLDLIFDVDPTMPDQLIGDPLRLRQVITNLIGNAVKFTTK-GQVALSCR 971 Query: 395 WT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 972 VKRYVAVADAVELEFCVADTGIGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRL 1031 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + G + S+ +G Sbjct: 1032 VNLMSGDLWVESEYGQGSRFYFT 1054 >gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 653 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 177/439 (40%), Gaps = 7/439 (1%) Query: 40 LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW-SLITLAVYAANLSLGKKVMNSDI 98 L + ++ L L+ A + +L ++ Sbjct: 185 LLIAGRRGLAAALAGSTLVFAACLLAVGPPVFTAGLDPASAALILCYGATLVLRLARRST 244 Query: 99 KIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFM 158 + G L + + + I ++ Sbjct: 245 NSNAAATTSAAAVAGPSIDDAASLLDAALISLDARGMVTAVSPATLTGIGQERDTVTGRS 304 Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L V + V L A ++ A L + L Sbjct: 305 LVDLVHVGDRVVF--LQALADARRTAQVVTAAARLRRGDGTYHPAGLRLRGCAETGAVHV 362 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 A A E A A + + AKS+FLA++SHELRTPLNAI+GFS++++ E Sbjct: 363 AVAVAANAAGESA--DLQTALDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEF 420 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G ++ KEY+G I +SGQHLL+++N +LD+S+IEAGRYEL A L + + + + Sbjct: 421 FGGFESDRQKEYVGLIRQSGQHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDV 480 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ A+ K++ + + + AD + Q++LNLLSNA+KFT + G V + G Sbjct: 481 VREEARRKDLRLDVRPGCRDEEITADRRACHQILLNLLSNALKFTEV-GVVTLESRRV-G 538 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G GIAE +I + F Q S QG GLGL + + + HGG I Sbjct: 539 AMVEFSVSDTGIGIAESDIERLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTI 598 Query: 459 RSKLREGVEVIAILPNTRV 477 RS+ G V LP V Sbjct: 599 RSQPGVGTMVTVRLPAVYV 617 >gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY] gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY] Length = 1137 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 101/376 (26%), Positives = 163/376 (43%), Gaps = 33/376 (8%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFM---------LPYAVFLSFFPVVVALSTQAIM 180 G TP L + +AL++ + F L A V AL + Sbjct: 311 GQATPAELVMMPIVLNGVALAVVEMGWFRTVAPHEVDFLVRAGEQLAQAVRGALDRSRLE 370 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---- 236 S+ A L L + + + Q AELE + + + Sbjct: 371 SLLDETQRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELEHSNAQLEAQTE 430 Query: 237 ----------------ETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + R + + KS FLA+MSHELRTPLN+ L ++++ Sbjct: 431 QLQYQKQRLLTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQ 490 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L E + Y IH +G LLNLIN+ILDLS+IEAG+ + +++ +V + L Sbjct: 491 QNLTAEQVR-YAQTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVAKVVAGVMEPL 549 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + +AQ+K ++ ++P + + + +D + + Q++ NLLSNA+KFTA G V + V Sbjct: 550 RAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTAR-GEVTLRVFAGDN 608 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GIA + + +F Q + G GLGL I++ + GG + Sbjct: 609 DTLCFAVRDTGIGIAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAV 668 Query: 459 RSKLREGVEVIAILPN 474 +S EG LP Sbjct: 669 QSAPGEGSVFTLTLPV 684 >gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Verrucomicrobium spinosum DSM 4136] Length = 2178 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 153/354 (43%), Gaps = 24/354 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +++L F + FL + + I + + L + L Sbjct: 1396 VIELASLHRFTAAHLNFLEQLTQSIGVVLNTIEA-TMRTEGLLQQSQQLTAELQSGQNEL 1454 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLA-----KSRFLASMSHEL 260 ++N ++ E + AE+E ++ R+ E LA KS FLA+MSHEL Sbjct: 1455 QQTNEELEQKAQELAEQNAEVERKNREIEQARRALEDKAAELALTSKYKSEFLANMSHEL 1514 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN+IL + + + G L+ ++ +IH +G LLNLIN+ILDLS+IE+G Sbjct: 1515 RTPLNSILILGQQLAENSAGNLST-RQVDFARNIHSAGSDLLNLINDILDLSKIESGTVS 1573 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + I+ + + A+ KN+ DP L D K ++Q++ NLLSNA Sbjct: 1574 VEAEEITFATLRDSVERNFRHIAENKNLPFKLDFDPGLPRHFSTDPKRLQQIVKNLLSNA 1633 Query: 380 VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426 KFT+ G V++ VG S I+IKD G GI + + +F Q Sbjct: 1634 FKFTSQ-GSVNLKVGLASEGWSPDHPVLSRVPSVMSIAIKDTGIGIVPEKQRLIFEAFQQ 1692 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I++ + GG+ + S EG LP V Sbjct: 1693 ADAGTSRKYGGTGLGLAISRELATLLGGEIRLHSVAGEGSTFTLYLPLDYVGPA 1746 >gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1040 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 13/262 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + RAEE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 656 ITERKKMEDDLISAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAS----IEEE 711 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA- 343 + +EY+ I + LL LI++ILDLS+IEAG E S L I+ E L+L+ Sbjct: 712 KEKQEYVSIIENNNALLLQLISDILDLSKIEAGTMEFIYSDFELNKIMAELESSLRLKLP 771 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-Y 402 KNI + + + + A+ + Q+I+NL++NA+KFT G + G+ Y Sbjct: 772 PNKNISLTFEPQLPVCYIHAEHNRLSQIIINLVTNAIKFTDAGS---IRFGYEKRNKILY 828 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI + + + F + + QG GLGL I ++++ + GG+ + S + Sbjct: 829 FYVSDTGCGIPKDKKEEIFGRFVKL----NNFAQGTGLGLSICRTLVQHMGGEIGLDSAI 884 Query: 463 REGVEVIAILPNTRVLNFIPED 484 +G LP N ++ Sbjct: 885 GKGSTFWFTLPYVPATNVQQQE 906 >gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] Length = 575 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + T +++ I + L+ L Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAT--KFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + E + + ++V E I +L+++A++K+I++ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVKVQEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV S I +KD G GI E EI + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVE-KSDSTVTIKVKDTGIGIPEKEIERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ + S+ G E +P + + Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573 >gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 604 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 90/438 (20%), Positives = 168/438 (38%), Gaps = 25/438 (5%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWS--LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIW 109 + A++ +++ + L L ++V + + Sbjct: 170 AVILFAPEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKS---LSLAARQ 226 Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + G ++ + + + +L L ++ + L V Sbjct: 227 MARGDFSVRVPVASADELGQLAGSFNFLA----GELSRTVAALSREKEKLNRVVRDMTDG 282 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 V+ ++ ++ + L G+ + + ++ V E + L Sbjct: 283 VLAFTASGRVLFANPRAEKLLGLPLSPGAELPVELLDPLRAAVAGEGTTGEINWQERVLA 342 Query: 230 VAKSLSDETRKRAEEE-------------NLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 V + E E + FLAS+SHELRTPL+ I G+ E + Sbjct: 343 VRAAPLQEEDPCGEAAVAILQDITTQKKMEQMRREFLASVSHELRTPLSFIQGYGEALAD 402 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + +EY G I L L++++ DL+++ AG L + + ++V Sbjct: 403 GL--ATGEKERQEYTGIILAEANRLRRLVDDLFDLNKMAAGHLPLELAEVDPGELVTGVA 460 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 Q E + + +++P L VWAD + QV++NLL NA + T+ GGR+ ++ G Sbjct: 461 RKYQPLLAEHGLVLEVELEPYLPPVWADAGRLEQVLVNLLDNARRHTSPGGRITISAGL- 519 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +GR IS+ D G GI GE+P + F + + + G GLGL I + ++ HGG+ Sbjct: 520 AGRELKISVADTGKGIPAGELPYIWERFYKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRV 579 Query: 457 LIRSKLREGVEVIAILPN 474 + S+ G LP Sbjct: 580 EVVSEPGRGSIFSFYLPL 597 >gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 779 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 9/257 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + A + S E+ +AE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 207 RPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTA 266 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 K + I +SG LL +IN+ILD S+I AG+ L + L + V + ++ Sbjct: 267 ----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSA 322 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R EKN+E+ ++DP L + V D RQ++ NL+ NAVKFT G V + VG + G Sbjct: 323 RVAEKNLELIVRVDPRLPTYVVGDAGRFRQIVTNLVGNAVKFTEK-GHVLIDVGGETVNG 381 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G GI ++ V F Q + +G GLGL IA ++ G+ Sbjct: 382 VVQLKLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 441 Query: 458 IRSKLREGVEVIAILPN 474 + S++ G +P Sbjct: 442 VESEIGRGSVFWFAVPL 458 >gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 1035 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 908 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 18/271 (6%) Query: 230 VAKSLSDETRKRA-EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 K + ++A EE + AKS FLA + HE+RTPLNA+ G + ++ + N+ + Sbjct: 245 QRKMAQQQASEKALEELSRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTEL----NDQQQ 300 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ I SG++LL +IN ILD S+IEA + EL E A L + + + + +A +KN+ Sbjct: 301 EFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFELGPCIEDILRLFVSQASKKNL 360 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----------GWT 396 E+ ++ + ++ D ++Q++ NL+ NAVKFT G V + V Sbjct: 361 ELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFT-DNGEVVIYVNGTPIKSTENEQEN 419 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++KD G GI + F Q + G GLGL I++ + GG Sbjct: 420 PTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYGGTGLGLAISKRLSELMGGGM 479 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + S +G + + P + E Sbjct: 480 WVHSTEGKGSTFNFTIQAKPAPSSSPVTSQE 510 >gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens TA208] gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3] Length = 611 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + N E ++ + ++ Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAW--ENKEIAPRFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I +I + I ++ +E+++E +++ V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V +V YIS+KD G GI + ++ V Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G ++ LP Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 766 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 129/252 (51%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 IA+ + A + ++R RAE AKS FL++MSHE+RTPLNA+LG +E++ + N Sbjct: 353 IAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHL----N 408 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE + + +G LL+++N ILD S+ E+GR +L L D+VRE ++ Sbjct: 409 FEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVL 468 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399 KN++ + D ++QV++NLL NAVKFT G + +TV G Sbjct: 469 RKNLQFTFHPPEHDRWIVGDSLRLKQVLMNLLGNAVKFTDR-GAIELTVQPYPGSEPGKE 527 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + +KD G GIA+ + V FGQ ++ G GLGL I+Q I+ GG+ Sbjct: 528 TIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCE 587 Query: 460 SKLREGVEVIAI 471 S+ G Sbjct: 588 SRQFVGSRFHFS 599 >gi|256840539|ref|ZP_05546047.1| two-component hybrid sensor kinase/response regulator [Parabacteroides sp. D13] gi|256737811|gb|EEU51137.1| two-component hybrid sensor kinase/response regulator [Parabacteroides sp. D13] Length = 795 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + F IL + E E + L + + A+ N AKS FL+ MSH++RT Sbjct: 239 LRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRT 298 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G + + + + E + + I S + LLNLINE+LD+S++E+G L+ Sbjct: 299 PMNAIIGMTTIASMHI---DDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLT 355 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVK 381 + + ++++ I M+Q +K + + D + ++QV+LNLLSNA+K Sbjct: 356 DEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNAIK 415 Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +T G++ + + +++ DNG GI + V F + A Q Sbjct: 416 YTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQ 475 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLG+ I+++I G+ L+ S+ +G + ED+H Sbjct: 476 GTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQLKLQDQGCFEDDH 525 >gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 944 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET------MGPLNNETYKEYIGDI 294 R E K F++ +SHELRTPL++I G +++ + +G + + Sbjct: 454 REREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQIS 513 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + Q L+ L+N+ILD+++IE G+ +L +S + I R + L A++ + I + Sbjct: 514 LNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDV 573 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 P+L V AD+ + QV++NLLSNA+KF++ G RV ++V + + S++D GPGI Sbjct: 574 PPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETS-VVRFSVRDWGPGIPH 632 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q + A G GLGL I++ ++ HGG+ ++S+ +G LP Sbjct: 633 TDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLPL 692 Query: 475 TRVLNFIPE 483 +V E Sbjct: 693 AKVQPPSSE 701 >gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] Length = 902 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 13/250 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE+ K ++++AE + KS FLA+MSHE+RTPLNAI+GFS++I + Sbjct: 489 ITELEMIKRELQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAES----NDE 544 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y G + + LL LINEILDLS+IE+G E + SL ++ RE R Sbjct: 545 EERKTYYGIVESNNGRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFR-M 603 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYI 403 + + + + D+ + QVI NL+ NA KFT G ++ G+ G Sbjct: 604 PVGVSLVHEPSDESLMIETDKNRVFQVISNLIGNAAKFTKEGS---ISYGYKRVGDQIVF 660 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI ++ V F + + QG GLGL I +SI+ GG+ + S+ Sbjct: 661 HVTDTGTGIEPEKVGRVFERFAKL----NNHAQGTGLGLSICKSIVERLGGKITVNSEFG 716 Query: 464 EGVEVIAILP 473 G LP Sbjct: 717 VGTTFNFTLP 726 >gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 398 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 11/252 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I ++ + E +++AE + +KS FLA+MSHE+RTPLNAI+GFSE++ Sbjct: 6 HDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLA----AAT 61 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++Y+ +H + + LL L+N+ILDLS+IEAG E S + + ++ + + ++ Sbjct: 62 EEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMK 121 Query: 343 A-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 + ++I + V +D + QV+ N +SNA+KFT G + + Sbjct: 122 IGYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTE-GSIRIGYKPCENG-L 179 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G GI+ ++ V F + G GLGL I ++I+ GG+ S Sbjct: 180 RFYVTDTGSGISADKLGGVFDRFVRLQSDKN----GTGLGLSICKTIVNKLGGEIGAESV 235 Query: 462 LREGVEVIAILP 473 + +G LP Sbjct: 236 VGQGSTFWFTLP 247 >gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and response regulator receiver family [uncultured archaeon] Length = 406 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 8/264 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +A+++ ++ ELE + + EE KS FL+ SHELRTPL + + Sbjct: 131 RAEADRERVLKELESKNVELQKAMEHMADLEEITRMKSEFLSITSHELRTPLTPMKAQLQ 190 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +I +G L N+ K+ + + R+ L LI++ILDLSRIEAGR +L+ +++ IV Sbjct: 191 MILEGYVGEL-NDNQKKSLEVVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIV 249 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +E II + A K+IEI K+ L + D + + QVI NLL+NA+KF+ G+V + Sbjct: 250 KEAIITQESSATSKDIEISTKLA-DLPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIE 308 Query: 393 VG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 SI D G GI++ + + F Q ++ + G GLGL I + I+ Sbjct: 309 TKCLDIEGKENVLFSITDYGIGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGII 368 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 H G+ I S+ G +P Sbjct: 369 HAHRGKVWIDSESGNGTTFYFTIP 392 >gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 709 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 10/293 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F ++ L + + + + + + E +++AE+ + AKSRFLA+MSH Sbjct: 49 RFIHLNGRLILNEEGLPKQVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSH 108 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NA++ S ++ + + ++Y+G + RSG++LL +IN+ILD S+IEAG+ Sbjct: 109 EIRTPMNAVINLSRLVLQDELTS----RQRDYVGKVLRSGENLLAIINDILDFSKIEAGK 164 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 EL L +++ + ++ L A +K I ++ L + D +RQ++LNL+S Sbjct: 165 LELESVPFGLRELIDDVVVPLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVS 224 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + V +G + D+G GI+ + + SF Q +I Sbjct: 225 NAIKFTEQ-GEVLLKVQLLKRQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINR 283 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I + ++ G + + S G + + P Sbjct: 284 RFGGTGLGLAITKQLLGLMGSELEVESAPGAGSNFAFTIQLALADDASPPAAS 336 >gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1170 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 3/298 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + + D EL +A+ + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQSQALADQRDALDRNNEELNIAQGELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G S++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + A GG + S +G +LP V E Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQYVEQDPQAPGSE 731 >gi|170697001|ref|ZP_02888097.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138175|gb|EDT06407.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1034 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 94/467 (20%), Positives = 160/467 (34%), Gaps = 24/467 (5%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71 V L+ G S F + H + + + L +I Sbjct: 280 VESLLKLNPWRGGASSSSAPVFRDGFLLFHGK--LEPTGWTLAYALSWTDIAA--GVARS 335 Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 TL L + + R++ + + L Sbjct: 336 AGTLGAATLLALMVMWGLLLRFHRREFVPLYARSQRVFDSEALCRSVIEMAPIGLGLIAR 395 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 ++ + + ++ A + ++ V L Sbjct: 396 DDGHFMLVSPALRDMVERIGGDYHALSSEVADAWQARGDAGGVLHGDLLVGDVQAAGLHL 455 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + ++ K L+ +E + A+ N AKS Sbjct: 456 EFIACGARY-----QDTDVLIAAVADMTAKRQLV-------QQLEEAVRAADSANAAKSS 503 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILG E++E + + T + + S LL L+++ILD Sbjct: 504 FLAAMSHEIRTPLNVILGNLELLERSAL----DATQHGRVHTLRTSATSLLALVSDILDF 559 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQ 370 S+IEAG + A L V + A+ K +++F + S + D Q Sbjct: 560 SKIEAGAMSVESIAFDLTAAVERELNAFATIAKAKGVQLFCEFHASSTQRMRGDPTRFAQ 619 Query: 371 VILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 V+ NLLSNA+KFT +G + ++D G GIA + +F Q Sbjct: 620 VLRNLLSNALKFTDVGRVTVRVAVVAERHDAPELSVEVEDTGIGIAAEHRRKLFNAFSQV 679 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +I G GLGL + ++A GG+ + S+ G +LP Sbjct: 680 DTSITRRYGGTGLGLALCDRLVAAMGGRIAVESEPGFGSRFSVLLPL 726 >gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 793 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 12/277 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++L+ Q +L + + ++ A++ + +S FL+ M+HELRTP+NA++G + Sbjct: 239 RLLTLQKANLELKSSAKQRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLD 298 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + ++E+ E I S +L+N++N+ILD+++IE+G+ +L S S+ + + Sbjct: 299 LLR---LSKQSSESM-ELIETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETI 354 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA---IGGR 388 + AQ+K I++ K + V DEK R+V+ NL+SNA+KFT GR Sbjct: 355 DGLVKSFLPSAQKKQIQLNIKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGR 414 Query: 389 VHV--TVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V++ V S YI +I+DNG GI E + + F Q ++ G GLGLPI Sbjct: 415 VNLNCEVSQQSEELLYIKLTIEDNGIGINESDQSKLFAPFTQAQKSVTREYGGTGLGLPI 474 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +S++ GG+ + SK G LP + + Sbjct: 475 CRSLVQQMGGKITLTSKEGVGSTFTVELPFSLIETEQ 511 >gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297] gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297] Length = 589 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 12/254 (4%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 RA++ + AKS FLA+MSHELRTPLN I+G ++++ E P ++ + S + Sbjct: 215 DRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSP------WLNSLAVSSE 268 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--- 356 LL IN++LD S IE+G+ + + LI ++R+ + ++ + + + + Sbjct: 269 ALLTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWS 328 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 S V AD +RQ++LNLLSNA KFT G++ + V + D G GI + Sbjct: 329 SHCWVMADGHKIRQILLNLLSNAFKFT-EHGQIVLAVQKQEDGQFQWRVSDTGIGIPADK 387 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-- 474 + + SF Q + G GLGL I++ + GG + SK +G + LP Sbjct: 388 LEAIFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLPLPP 447 Query: 475 TRVLNFIPEDNHES 488 R ++ P ES Sbjct: 448 ARPVSTPPPAEPES 461 >gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 597 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + + + KE I+ + Sbjct: 364 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEKEKKEMAKVIYDESLRMGR 421 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG EL + L+ + I A+EK IE+ + + Sbjct: 422 LVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIAL 481 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T GG V + + SG G I ++D+G GI E ++P V Sbjct: 482 DPDRIEQVLTNLIDNAIRHTESGGTVRLIIEP-SGDGVTIHVQDSGSGIPEEDLPFVFER 540 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA++I+ H G + SKL EG LP Sbjct: 541 FYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|28897843|ref|NP_797448.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260361774|ref|ZP_05774799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260877003|ref|ZP_05889358.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260899074|ref|ZP_05907515.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|28806056|dbj|BAC59332.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308089142|gb|EFO38837.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308093690|gb|EFO43385.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308113233|gb|EFO50773.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 806 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 21/305 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229 ++ L +L YI + + KI + E LI + Sbjct: 274 GGIIPFLLLCVLVGYYLLNRYIVEPIVRIATKIDDSKTGGIIDIDYGSEDEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E S S + I+ + EK ++ Sbjct: 390 HLSTLYDSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQ 449 Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 P+ D+ +RQV+ NLL+NAVKFT G V VT+ I+I Sbjct: 450 FKVTSLVPAGRWYDNDKARLRQVLFNLLNNAVKFTDR-GIVEVTLSEQTHYDKTVLVIAI 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIG 568 Query: 466 VEVIA 470 Sbjct: 569 TTFTV 573 >gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira platensis NIES-39] Length = 856 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 27/273 (9%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A ++ AE+ N AKS FLA+MSHELRTPLNAILG+SE+++ + + Sbjct: 577 ITEHKQA-EELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDAQDIGQD 635 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + +IH +GQHLL LI++I+D S+IEAGR + ++ E + A+ Sbjct: 636 DFVAD-LKNIHVAGQHLLTLISDIIDFSKIEAGRINFHLEKCQINTLLWEVETTIAPLAE 694 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-------- 396 + + ++ ++ P L ++ D +RQ +LNLLSNA KFT G+V + V Sbjct: 695 KNHNQLTLEVAPGLDLMYTDVTKVRQSLLNLLSNACKFTEQ-GQVILRVWQQLIPATDLP 753 Query: 397 -----------SGRGQYIS-----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 S IS ++D G G+ E +I TV + F Q + G GL Sbjct: 754 DLPIYHSPESPSETLSEISFIFWQVQDTGIGMNERQIATVFSPFTQADESTTRKYGGTGL 813 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GL I + GG + S+L +G + LP Sbjct: 814 GLSITHKLCQMMGGDLWVESQLNQGSTLTMRLP 846 >gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 1012 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 22/334 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 LS L N A + L + V + G++ +S + Sbjct: 270 VLSSITLPNGSWQLAAIPQTGWLDGFPLLVWLRLGGSVTAVLAGGLVFVLVSAPARLKKA 329 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + ++ + + + + + + K FLA+ SHELRTPLN Sbjct: 330 VERATIAL--------------REREEDLERANTDLKHLDQLKDEFLANTSHELRTPLNG 375 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +E + G L++ T + I SG+ L +L+N++LD S+I +L + Sbjct: 376 IIGIAESLIDGATGQLSDLTQSN-LAMIVSSGRRLSSLVNDVLDFSKIRYSNIDLQLKPV 434 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L I I + Q +KN+++ I+P +V ADE ++Q++ NL+ NA+KFTA Sbjct: 435 DLYTITDLVITLSQPLVGKKNLQLINSINPESPAVQADENRLQQILHNLVGNAIKFTAA- 493 Query: 387 GRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G+V + I I D G GI+E + + SF Q S G GLG Sbjct: 494 GQVEILAKKVDNLESDQEFLKIVIADTGIGISEDKFEQIFESFEQASGTTAREYGGTGLG 553 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L I + ++ GG+ + S+L EG + LP Sbjct: 554 LAITKQLVELQGGKIEVFSRLGEGSQFSFTLPIA 587 >gi|32400388|dbj|BAC78683.1| two-component histidine kinase [Cochliobolus heterostrophus] Length = 1329 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 16/287 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 771 DTDLTH----AQREILTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 826 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V + Sbjct: 827 LKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKVAIS 885 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 886 MAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 945 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ GG+ + S +G RV PE Q Y Sbjct: 946 LVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 932 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 3/301 (0%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 A + + + + + + + ++ LE A Sbjct: 608 LLAGSIGSASARVMVASIVKGEALSYEGVMEILDATSRAIEYSRRLEEKSHALESATEEL 667 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 +R +E + K F++ +SHELRTPL +I F E++ ++ + +E++ + Sbjct: 668 RAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNP--EMDADQRREFLEVVV 725 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R + L LIN++LDLS+IE+G + + L + RE Q ++ ++ +I Sbjct: 726 RESERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQLHIEIA 785 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAE 414 +++ D + Q+I+NLLSNA KFT G G+V + + G +S+ DNGPGI+ Sbjct: 786 SDDNAIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTDNGPGISA 845 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q S +G GLGL I + I H G + S+ G + LP Sbjct: 846 EDQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGASFVCKLPR 905 Query: 475 T 475 Sbjct: 906 A 906 >gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 595 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 EL+ A + K E N KS F+A++SHELRTP+ A+ G +++ E +G L N++ Sbjct: 353 ELQQANFKLEGLVKELEYLNELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKL-NDS 411 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + +S + LLN +NE+LD +++E G++EL S +++RE ++ +K Sbjct: 412 QLDLLETAGKSIERLLNQVNELLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKK 471 Query: 347 NIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 +E+ + ++ AD + + Q++LNLLSN++KFT G++ + + I + Sbjct: 472 KLELAVEIHAGENRTMRADRERILQILLNLLSNSIKFTPQRGKITIKA-YMEDNEMTIEV 530 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI + + T F Q + I G GLGL I++ ++ HGG+ S EG Sbjct: 531 IDTGIGIPVEKQKNIFTKFYQVNNQIN----GTGLGLAISRQLIEMHGGKISFESTEGEG 586 Query: 466 VEVIAI 471 Sbjct: 587 SVFKFT 592 >gi|312891713|ref|ZP_07751222.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295796|gb|EFQ72956.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 604 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 160/366 (43%), Gaps = 11/366 (3%) Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 + +G L + + +L + + + + ++ + + Sbjct: 87 ILLIVGSFLVLSVVYVVFQDVNIIVIQLVILIILFGYYMLGVKWGTIYSLINVAPLLIYL 146 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV--KILSCQAEKDDLIAELEV 230 A M H+ L G T FF +I + + L + + + Sbjct: 147 LWVDSAHMMSHLRPEKLDGYTVTVSVFFNFILIMFIQGHFYGAFLKNIKQLKEFADSEKQ 206 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 +R+E+ + A+S FL++MSHE+RTPLNA++G S ++ +E+ KE Sbjct: 207 LNEQLGLAIERSEKSSKAQSEFLSTMSHEIRTPLNAVIGMSNLLMMES----PRPDQKEN 262 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + + S +LL L+N++LD ++IE+G+ +L ++++ ++A+EK + Sbjct: 263 LEILRFSAGNLLTLVNDVLDFNKIESGKITFENIKFNLHELMQHICGGQIMKAEEKGLNF 322 Query: 351 FQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SI 405 +D L + D + Q+I NL+SNA+KFT G V ++ I SI Sbjct: 323 HLSVDTFLKTHYLIGDPTRLSQIIFNLISNAIKFTNRGAVTVDISCIEDRHNEATIKFSI 382 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIAE ++ + F Q S+ G GLGL I + ++ GG+ + S++ G Sbjct: 383 RDTGIGIAEEKMADIFDPFTQESVTTTRQFGGTGLGLAIVKRLLDLQGGRIGVSSEIGMG 442 Query: 466 VEVIAI 471 E + Sbjct: 443 SEFEVV 448 >gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1133 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 8/264 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 IA+++ ++ + ++ AE N AKS FLA MSHE+RTPL+A++G +E+ T+G Sbjct: 596 RDIADVKAIEADLRQAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTEL----TLGTE 651 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++ + + +LL +IN++LDLSRIEA EL L + L+ + Sbjct: 652 LSPQQRDALETAREAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRPQ 711 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A K + + + P+ V D+ +RQ++LNL+ NAVKFT GG V V Sbjct: 712 AARKGLFLTLAVAPNTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAAPDGDPGQ 771 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D G GIA + + F Q + G GLGL I + ++ + GG+ + S Sbjct: 772 LELAVADTGIGIAPDRLERIFDMFTQADRTVALNFGGTGLGLAICRELVRSMGGEIAVDS 831 Query: 461 KLREGVEVIA--ILPNTRVLNFIP 482 +G L +V+ P Sbjct: 832 VPGQGTVFRVKLRLTPAQVVPIEP 855 >gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] Length = 948 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 8/236 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RAE N AK FL+ MSHE+RTP+NAI+G S++ +M E +E +G I S Q Sbjct: 558 ERAEAANRAKGEFLSRMSHEIRTPMNAIVGLSDL---TSMMDDVPEQVRENLGKIRSSSQ 614 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +LL LI++ILD+SRIE+G+ +S A S+ V E ML A + +E + D Sbjct: 615 YLLRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKDVENR 674 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEG 415 ++ D ++QV+ NL+SNA KFT GG + + V T Q + DNG GI+ Sbjct: 675 TLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVGISVE 734 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 V +F Q QG GLGL I+++I+ GG+ ++S+L +G E Sbjct: 735 NQKRVFGAFEQVGPNYS-KSQGTGLGLTISRTIVGLMGGELKLKSELGKGSEFYFS 789 >gi|154323950|ref|XP_001561289.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10] gi|150842603|gb|EDN17796.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10] Length = 1310 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ ++D S+ V D +RQVILNL+ NA+KFT G V + Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866 Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + D G GI ++ + +F Q ++ G GLGL I Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ G ++S+ +G Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953 >gi|117923856|ref|YP_864473.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607612|gb|ABK43067.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1302 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 105/510 (20%), Positives = 204/510 (40%), Gaps = 39/510 (7%) Query: 15 LISPTGDHLGLEYPSKMDFDREIITLH-------VESLFRVSPILPLFVLLVANIG---- 63 ++ L Y + ++++ L+ ++ + ++ L +VA++G Sbjct: 447 SVTEAFLQLTNSYGAPPTTLQDLLDLYGIEDRERLQHMLEIALQSGLKGDMVASLGGHNQ 506 Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 W T+ ++ + ++ + + E L + ++A L Sbjct: 507 LWLRTLLQPIRQGPATIKIHIVIQDITREHLIQEAHTREERRNTWLLKLNEVAYASGDAL 566 Query: 124 LTLVEPGTWTPEYLTIYKSATL---LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + L G T + L + L A + P A S QA + Sbjct: 567 MELALQGAITLSASPQAFFIWMDSSLNHICQERLYPAPRDPAAVDRYRPARFAPSQQAFI 626 Query: 181 S--------------MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 S ++ AL + +++ L A+ + Sbjct: 627 SKESVLHHAQAATDQPALVLPLFEDRQVIALLGVLGASTPYDNRDIQHLHYFAQGLWRVL 686 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + + A+ N K RFLA+MSHE+RTP+NAI+GF+E+ ++ Sbjct: 687 QRRRDQEMVKQATAEAQRANAVKGRFLANMSHEIRTPMNAIMGFTEL----SLTQHPPAP 742 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + ++ I + Q LL L+N++LD S+I+A + L + S + +++ ML +AQ K Sbjct: 743 HDRHLQAIRTASQTLLALLNDVLDFSKIDAEQLALEQIPFSPTEQLQQIAQMLAPQAQAK 802 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG-- 400 + S+ ++ D +RQV++NL+SNA+KFT G+V + + T Sbjct: 803 GLHFHTFQQGSMPTLLLGDALRLRQVLINLVSNAIKFTHQ-GKVVLGMYGNEPTPEGRCL 861 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D+G GI + + F QG ++ G GLGL I++ ++ GG+ + S Sbjct: 862 LRFEVIDSGIGIEASQQERLFQPFVQGDLSTTRTYGGSGLGLAISKRLVHLMGGEMQLES 921 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 L G + +LP + + + + S Q Sbjct: 922 TLGAGSKFSCLLPFSLCKDDLAKSLTPSAQ 951 >gi|298377589|ref|ZP_06987541.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298265608|gb|EFI07269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 795 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 9/317 (2%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 +I+ + ++ + + + F IL + E E + L Sbjct: 212 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 271 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A+ N AKS FL+ MSH++RTP+NAI+G + + + + E + + I Sbjct: 272 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 328 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354 S + LLNLINE+LD+S++E+G L++ + ++++ I M+Q +K + Sbjct: 329 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 388 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409 + D + ++QV+LNLLSNA+K+T G++ + + +++ DNG Sbjct: 389 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNG 448 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + V F + A QG GLG+ I+++I G+ L+ S+ +G Sbjct: 449 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 508 Query: 470 AILPNTRVLNFIPEDNH 486 + ED+H Sbjct: 509 FTMQLKLQDQGCFEDDH 525 >gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1480 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 9/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ ++ ++ A+ AKS FLASMSHE+RTP+N +LG ++ + Sbjct: 672 HDISKRMKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL--- 728 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K + S + LL LIN+ILD S+I+AG+ EL +L ++ E + + Sbjct: 729 -TDYQKRRVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQ 787 Query: 343 AQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRG 400 AQ K++E+ + S V D +RQ + NL+ NA+KFT+ G V + G SG Sbjct: 788 AQNKSLELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSK-GEVLIEAGLRDSGDE 846 Query: 401 QYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I D G GIA +I ++ SF Q + G GLGL I Q I GG I Sbjct: 847 WCFWCVITDTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSI 906 Query: 459 RSKLREGVEVIAIL 472 S++ +G V + Sbjct: 907 TSEVGKGTRVEFTI 920 >gi|254517110|ref|ZP_05129168.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3] gi|219674615|gb|EED30983.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3] Length = 1470 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 11/315 (3%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLS 235 + + L++ ++ Q +++L A+++ + Sbjct: 771 SLSVRKLPPPWLSGIAYTVYGIMMLLLVASLWRRQLQKQRLEQKAREELEAKVKERTADL 830 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + AEE + AKS+FLA+MSHE+RTP++ I+G ++++ +G N + Y Sbjct: 831 EVATAAAEEASKAKSQFLATMSHEIRTPMHGIIGMTDLL----LGTALNPPQRRYAETAK 886 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-EIFQKI 354 +SG++LL++IN+ILD S+IEA + E+ + + + ++ + + A++KN+ + + Sbjct: 887 QSGENLLSIINDILDFSKIEASKIEIDKHSFDINLLIDRVCQLQSVTAEKKNLGLLSYPV 946 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGP 410 S ++ DEK + Q + NL+ NA+KFT+ GR+ VT + +S+KD G Sbjct: 947 TNCSSEIYGDEKKIGQCLTNLVGNAIKFTSE-GRIQVTATVEAKGQDDWVLELSVKDEGI 1005 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ E V F Q + G GLGL I + + G+ ++ S + G V Sbjct: 1006 GMDEETQSRVFEQFTQADASTTRRFGGTGLGLSITKQFIELMNGEVILESAPQAGTTVTI 1065 Query: 471 ILPNTRVLNFIPEDN 485 +P + + E Sbjct: 1066 KIPTKVMGPELTEPT 1080 >gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 569 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++++ AE+ + R++AEE + KS FLAS SHELRTP Sbjct: 278 HRPWSDAEIELVRELAEQVGTAIAHGTLYKELELAREQAEEVSRLKSEFLASTSHELRTP 337 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ++GF ++I + E +E+I + H S HLLN+IN+ILD+++IEAG+ EL Sbjct: 338 LNGMIGFLKLILEGM--ADDPEEQREFIQEAHNSALHLLNIINDILDIAKIEAGKMELEF 395 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVK 381 S + L + + +A KN+ +I ++ + + + QV+LNL+ NA+K Sbjct: 396 SPVELEYLFNKVYDFTAQQAHHKNLSFTLEIPAVYDGIVMYGNYQRLLQVMLNLVGNAIK 455 Query: 382 FTAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 FT GG + ++ + + D G G++ + + SF Q + Sbjct: 456 FTDEGG-ITISAEVIRKKVHFQGQEFPGHVKVRVADTGIGVSLDKQDKLFQSFSQVHGGL 514 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 G GLGL I+Q ++ GG S G V +P Sbjct: 515 NRPYGGTGLGLAISQKLVETMGGVVHFFSMGENLGSTVTFTVPL 558 >gi|149191688|ref|ZP_01869930.1| sensor protein TorS [Vibrio shilonii AK1] gi|148834477|gb|EDL51472.1| sensor protein TorS [Vibrio shilonii AK1] Length = 973 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 11/293 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLS---DETRKRAEEE 245 A L L + + A++ L E + R AE+ Sbjct: 407 AQALKVVAEAEAAAKRELQEHKEHLEEIVADRTLQLQKSNERLNQEVLNHAKARNAAEQA 466 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+N +LG + ++E + ++++ I+RSGQ+LL ++ Sbjct: 467 NRAKSAFLATMSHEIRTPMNGVLGTATLMEETPLNN----QQQKFLDVINRSGQNLLAIL 522 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAG E+ L ++++C ++ +A EK ++ I+ +S V+ D Sbjct: 523 NDVLDYSKIEAGHLEIRNKPFDLYRMIQDCYQLMLGKALEKGLDFKFHIESDVSDVYCGD 582 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + QV+ NL+ NA+KFT G ++V++ I + D G GI+ + + + Sbjct: 583 VTRLSQVLNNLVGNAIKFTPSGQVDIYVSLDPDDETCVMIEVSDTGVGISPEDQLNLFDA 642 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q +A G GLGL I+Q ++ G + S L EG ++P + Sbjct: 643 FTQAENGYSTA-GGTGLGLAISQKLVKAMNGAIYVDSYLEEGSRFWFVVPLEQ 694 >gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] Length = 400 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 3/229 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS +L+ +SHELRTPL ILGFS+++ E G L N+ K+Y+ I SG+HLL L+N+ Sbjct: 173 KSDYLSHVSHELRTPLAGILGFSKMLREEIYGTL-NDKQKQYVNGIRISGEHLLALVNDF 231 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS+IEA + EL +++ DI I M+Q +A E+N+ + K+ + D++ + Sbjct: 232 LDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVDFCKVDQRKI 291 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+++NLLSNA+KFT G V + V + D G GI E + + F Q Sbjct: 292 KQILINLLSNAIKFTEK-GSVTLEVDKI-DCLLTFCVVDTGIGIKEEDQQKLFQPFQQIH 349 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +G GLGL +++ + H G ++S+ +G LP V Sbjct: 350 SNLSRKHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPLREV 398 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 17/266 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E ++ + +++AEE + KS FLASMSHE+RTP+N I+G ++++ + Sbjct: 746 EDITERWKSEEALKKAKEQAEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTADL--- 802 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N ++ RS L+ L+++I+D SRIEAG+ + + +SL + + Sbjct: 803 -NADQASFVDMAVRSCDRLVRLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPL 861 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WT 396 + + + +DP+L + D ++Q++ NL+ NA KFT GR+ V Sbjct: 862 SGSNGVVLDFTLDPALPDRILGDAFRLQQILNNLVDNACKFT-TSGRITVQAWNLTAVEP 920 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D G GI + ++ + F Q + +GVGLGL I + ++ GG Sbjct: 921 RTVRVFFEVSDTGIGIPDEDLRRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGM 980 Query: 457 LIRSKLREGVEVIAIL------PNTR 476 + S+ +G L P R Sbjct: 981 SVTSEAGKGTTFAFSLRFETDCPPAR 1006 >gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512] Length = 538 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 112/456 (24%), Positives = 191/456 (41%), Gaps = 8/456 (1%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 L + RE+ L L + ++ V L A M Sbjct: 42 RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVC 101 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L +++L ++ ++ I + + + G + + + Sbjct: 102 AAFLFSAVGSIALARQGSSAGIATQSAEDFFLSVTPGLVLFLDPHGSVATIGGRDRRDFL 161 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + + + A+ A + V Sbjct: 162 AWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQR------- 214 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + L+ + ++ + ++ + AE N AKSRFLA++ Sbjct: 215 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 274 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFS+++ E G N+ +EY+G + SG HLL+++N +LD+S+IEA Sbjct: 275 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 334 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 GRYEL A + VR C ML L+A+ K + + +I SL + AD++ ++Q+++NL+ Sbjct: 335 GRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRSLGEIVADQRAIQQILINLV 394 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NAVKFT GG V + +++ D G GIA ++ + F Q + Sbjct: 395 GNAVKFTEAGGVVSIDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 453 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL + + ++A HGG F I S+ EG + + Sbjct: 454 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 489 >gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] Length = 500 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L++ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIAST-YNELSD 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL ++++ ++ Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVK-Q 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H T + Y Sbjct: 367 LPEIEIKALLPDDDIYINTDATRLKQVICNFINNARKFTEK-GYIHFGFTSHSEKDQLVY 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVESEI 481 Query: 463 REGVEVIAILPNTR 476 +G I LP R Sbjct: 482 GKGSRFIVTLPFKR 495 >gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica WH47] Length = 953 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 28/271 (10%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + ++ + AE N ++ FLA+MSHE+RTP+ AILG +++++ P N Sbjct: 538 VDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLKDPDN- 596 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+G LLN+IN+ILDLS+I++G+ +L + ++ E ++ +RA Sbjct: 597 ---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRAS 653 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK++ + + D + + D +RQ++LNL+ NA+KFT G V + VG+ + Sbjct: 654 EKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDS-GEVKILVGYDGPGKRPA 712 Query: 402 --------------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 I D G GI + ++ F Q + G GLG Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLG 772 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I + + GG + S +G + + Sbjct: 773 LAICRRLAHALGGDVSVESTYGKGSKFTLTI 803 >gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] Length = 575 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + + +++ I + L+ L Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + E + + ++V E I +L+++A++KNI++ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKVQEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV ++ I + D G GI + EI + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNS-IVVIKVTDTGIGIPKKEIERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ + S+ G E +P + + Sbjct: 518 YRVDKGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIPIVKKADP 573 >gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22] gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKEKLEESEIELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N+ KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654 >gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 660 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKEKLEESEIELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N+ KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654 >gi|39656353|gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolus heterostrophus] Length = 1239 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 16/290 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 708 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 767 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 768 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 823 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L RA E+ + + + ++ V D +RQ+ILNL+ NA+KFT G V V Sbjct: 824 FNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFT-EHGEVKV 882 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + + ++ D G GI ++ + +F Q + G GLGL I Sbjct: 883 AISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 942 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ ++ GG+ + S +G RV PE Q Y Sbjct: 943 SKRLVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEITAIQPQLVAY 989 >gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b str. F2365] gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858] gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria monocytogenes Clip81459] gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194] gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503] gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262] gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria monocytogenes FSL J2-064] gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria monocytogenes FSL J1-175] gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017] gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b str. F2365] gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858] gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503] gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262] gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194] gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017] gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria monocytogenes 1816] gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A] Length = 596 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 339 LLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398 A+E +E+ +++ D M QV++NL+ NA++ T G+V + Sbjct: 457 LAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 R I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 577 SVESELGKGSDFIITLPLYK 596 >gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 470 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + +AL I S + L A T + K ++ Sbjct: 163 LFLLAGVGGFFLALGFTFIASRKLSSPLLEMQAA---------TKKIAKGDLNTKVIVRS 213 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 KD++ + +L+ E ++ + +S F AS+SHEL+TP++ ++G+SEV++ + Sbjct: 214 KDEIGSLAVGINNLTQELKRHHDT----RSEFFASISHELKTPVSYLMGYSEVLKEKLY- 268 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E ++Y+ + L LI+++ DLS++E G++++++ I L ++ + Sbjct: 269 -QTEEEKEQYLSILEHEATRLNYLISDLFDLSKMEEGKFDINKEWIDLTELADNLDMKYS 327 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 L+A+EK++ K+D +LS + D K + QV NLL NA++ T G V Sbjct: 328 LKAKEKDLLFTVKVDENLSLFYGDGKRIEQVFTNLLDNAMRHT-TNGEVTCEF-RQGDNQ 385 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I IKD G GI E+P + F + + G GLGL I + ++ HGG I S Sbjct: 386 INIIIKDTGSGIPADELPFIFDRFYRVEKSRSREFGGTGLGLAIVKMLVKLHGGTIDITS 445 Query: 461 KLREGVEVIAILP 473 K EG + P Sbjct: 446 KENEGTQFTLSFP 458 >gi|218709123|ref|YP_002416744.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] gi|218322142|emb|CAV18256.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] Length = 818 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E LI + + +A+ AK+ FLA++SHE+RTP+N +LG ++++ + Sbjct: 314 EIGHLIKTFNEKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL 373 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++++ ++ SG H++ L+NEILD S+IE GR +L E+ L I+ + Sbjct: 374 ST----EQEKHLKSLYDSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVY 429 Query: 340 QLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT-VGWT 396 + EK ++ + PS ++D+ +RQ++ NLL+NAVKFT+ G V++ + Sbjct: 430 YTLSSEKGLQFKVYSEVPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEIVER 489 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 I ++D G GI++ + F Q + G GLGL I + I G Sbjct: 490 GDTYLSIRVRDTGIGISKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGSI 549 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S+ G L ++ P + ES +K Sbjct: 550 SVTSEEGIGTSFDVRL---KIKPCQPGEI-ESLPHK 581 >gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 865 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 9/260 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + L + ++ AE +AKS FLA+MSHE+RTPLNAI G + ++ Sbjct: 457 ELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLANMSHEIRTPLNAITGMTHILR 516 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P + + I +G+HLL +IN ILDLS+IEAG+ L + + ++ Sbjct: 517 RSGLSPEQTDK----LDKIEGAGKHLLEIINAILDLSKIEAGKLTLESVPVHVGSLLENV 572 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ML RA+ I I + S + D ++Q +LN +NA+KFT G + + V Sbjct: 573 ASMLSQRARALGIAINLEPITISSPLLGDPTRLQQALLNYATNALKFTEQ-GHITLRVKE 631 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D G GIA +P + +F Q + G GLGL I + + Sbjct: 632 EAQTEERVTLRFEVSDTGVGIAPNILPKLFGTFEQADNSTTRKYGGTGLGLAITKKLAEL 691 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG + S +G Sbjct: 692 MGGTVGVSSIEGQGSTFWFS 711 >gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 510 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 102/278 (36%), Positives = 153/278 (55%), Gaps = 1/278 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 I + L + + E+E + AE N AKSRFLA++ Sbjct: 186 QFMHVRIEMTAIRGATGRLRRIVAQLSDVTEMERLRRDVARKAAEAESANDAKSRFLAAV 245 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNA+LGFS+++ E G L N+ +EY+G I +SG HLL+++N +LD+S++EA Sbjct: 246 SHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEA 305 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 GRYEL + + + + C ML L+A+EK + + +I + + AD++ +RQV++NL Sbjct: 306 GRYELLMESFPISETIASCEAMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLA 365 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT GG V + G +++ D G GIA +I + F Q + Sbjct: 366 GNAIKFTDAGGVVSIDAAR-EGGMLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYE 424 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL + + ++A HGG F+I SK EG V LP Sbjct: 425 GTGLGLSLVKGLVALHGGTFVITSKPAEGTVVTITLPA 462 >gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 596 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTPL+ + G+SE + + G + KE IH + Sbjct: 356 RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAG--TPDERKELAQVIHDESLRMGR 413 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW 362 L+ ++LDL+++EAG ++ + + + + A+E+ I + ++ + + Sbjct: 414 LVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIE 473 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPT 419 DE + QV+ NLL NA + T V + + I ++D G GI ++P Sbjct: 474 GDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPY 533 Query: 420 VLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 V F + A A G GLGL I ++I+ H G+ ++S L +G LP R Sbjct: 534 VFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYR 591 >gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] Length = 1028 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 76/355 (21%), Positives = 158/355 (44%), Gaps = 6/355 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 TL+ L+ P +Y + ++ + +S + + + ++ M Sbjct: 319 TLIALIMPVHVYTVGTIVYDAIDVVTLGICTFISIRAVFKKQEGAVIILTSSIIVVFSMI 378 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-- 239 + T ++ + + ++ + + +D+I + + ++ + Sbjct: 379 YDTVFELKLVGGHTEVTPIAFFIFIFLQAFTLARNFSKDYNDVIVMTTQLEDMLNKEKTL 438 Query: 240 -KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ + + K FLA+ SHELRTPLN I+ +E + G + N+ + + + SG Sbjct: 439 TEKLTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEGYV-NDMQRRNLSLVVSSG 497 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L NL+N+ILD+SR++ L+ ++ + + + K + I I+ L Sbjct: 498 KRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFEYIKPNKQVRIELSIEEKL 557 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + DE Q++ N++ NA+KFT G++ V+ I I+D G GI+E ++ Sbjct: 558 PFILVDEDRFNQILFNIIGNAMKFTHK-GKIAVSTERI-DNFVEIRIEDTGIGISEDKLD 615 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +F Q +I G+GLGL I ++++ HGG + S++ +G +P Sbjct: 616 QIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVESQINKGTIFRFTVP 670 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 25/158 (15%) Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 E AI+L + L+L ++ + D S + Q L+ NAVK Sbjct: 888 EQAIALEKEIEYVNSYLKLEKARFGEKLTIEFDIDDSIKAKIPPLVIQP---LVENAVKH 944 Query: 383 T----AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 + GG V +++ T +S+KD+G GI++ + + K G Sbjct: 945 GVMKKSEGGTVRLSIKET-NGEINVSVKDDGVGISKDILQGI------LKNDSKRRSVG- 996 Query: 439 GLGLPIAQSI---MANHGGQ-FLIRSKLREGVEVIAIL 472 ++I + G+ I S EG E+ + Sbjct: 997 ------VKNIDKRLKRISGRGLQINSNEGEGTEIQFSI 1028 >gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 626 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 153/344 (44%), Gaps = 8/344 (2%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 + I + L+ ALS +L Y VF +A+ A ++ L Sbjct: 280 GQKWVILAVSPLVDALSPLVEIRRVLFYMVFALLTASFLAVLYIAWELARPVE-KLRDYA 338 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + L ++ D++ L+ + A+ N KS FL Sbjct: 339 INKANLNAKQPMRLNFRIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFL 398 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+ SHELRTPLN I+G +++ + E E++ ++ HLL +I+++LDL++ Sbjct: 399 ATTSHELRTPLNGIIGCLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAK 456 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEAG+ +S + L ++ E I + + Q+K + + KI+P V AD K ++QVIL Sbjct: 457 IEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVIL 516 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 N+L NA+KFT G + + I++KD G GI + + F + Sbjct: 517 NVLGNAIKFTEK-GNITIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGS 575 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 G GLGL I++++M GG + S+ + G V LP Sbjct: 576 TTRKYSGTGLGLAISRNLMQLMGGNITLSSEGIDLGTTVKICLP 619 >gi|332143228|ref|YP_004428966.1| Signal transduction histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553250|gb|AEA99968.1| Signal transduction histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 641 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 14/322 (4%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L L+ + A+ +++ V + + + S + I K N+ L Sbjct: 169 SLSTIASLTSLVTLFAVVIVSLLMGKVTQVFVVSPIEKIKSAASRIALDHKKVNID-LQQ 227 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E L ++E ++ +A++ N AK+ FLA MSHE+RTPLN I G + ++ Sbjct: 228 NDELGRLARDVEAMSGEIEQYVAQAQQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDT 287 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + E +Y D+ S L +IN++LDLS+IE+G E+ + +L +++R+ I Sbjct: 288 PL----TEKQHQYASDLKSSASILATVINDVLDLSKIESGMSEIDVTEFALDNMLRDLIT 343 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393 +L A N + +V +D +RQ+I+NL+SNA+KFT G V ++ Sbjct: 344 LLGTNASANNTRLVYTSKNMDSVAVTSDITKLRQIIINLVSNAIKFTHK-GTVSISAKLK 402 Query: 394 ----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +++KD G GI + + F Q +I G GLGL IA+ + Sbjct: 403 KPSTEEVCENRLVVAVKDTGIGIEPDRLEHIFDKFTQSDSSITREYGGTGLGLAIARQLA 462 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG + SK+ EG Sbjct: 463 QLLGGDIKVVSKVGEGSCFTVT 484 >gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM 7] gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM 7] Length = 611 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + N E ++ + ++ Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAW--ENKEIAPRFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I +I + I ++ +E+++E +++ V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V +V YIS+KD G GI + ++ V Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G ++ LP Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42] gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42] Length = 611 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + ++ + ++ Sbjct: 371 EKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I +I + I ++ +E+++E +++ V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMT-KEQHVEFIRELPDRNLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V +V YIS+KD G GI + ++ V Sbjct: 488 IDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G ++ LP Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|150007164|ref|YP_001301907.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935588|gb|ABR42285.1| two-component sensor histidine kinase with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 793 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 9/302 (2%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 +I+ + ++ + + + F IL + E E + L Sbjct: 210 VLSILQNSREYVLFCQVMENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLL 269 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + A+ N AKS FL+ MSH++RTP+NAI+G + + + + E + + I Sbjct: 270 QDALQVAKSANQAKSDFLSRMSHDIRTPMNAIIGMTTIASMHI---DDRERIVDCLKKIM 326 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-I 354 S + LLNLINE+LD+S++E+G L++ + ++++ I M+Q +K + Sbjct: 327 VSSKLLLNLINEVLDMSKVESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLF 386 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNG 409 + D + ++QV+LNLLSNA+K+T G++ + + +++ DNG Sbjct: 387 QIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNG 446 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + V F + A QG GLG+ I+++I G+ L+ S+ +G Sbjct: 447 IGIKPDFLHKVFEPFERAEDATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFT 506 Query: 470 AI 471 Sbjct: 507 FT 508 >gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 608 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHE RTPL ++ ++ E G L NE +E + + + L Sbjct: 373 EIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGKL-NEEQRELLEAAYEDVERLTG 431 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDLS+IE+GR E+ +++ +IV + + +A+EK I + + WA Sbjct: 432 LVNDLLDLSKIESGRIEMEFDKVNINEIVEKTLDPFYKQAKEKEIALNFNKQENNIFAWA 491 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + VI NL+ NA+++ G + + GR +S+ D+GPGI + + Sbjct: 492 DPTKVSWVISNLIGNALRYA-DNGEIEIKAE-VKGRRVLVSVTDDGPGIPKEYQSKIFDK 549 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + K+ + G GLGL I++ I+ H G+ + S+ G +P Sbjct: 550 FVRAGN-DKNEKSGTGLGLAISKEIITAHNGRIWVESEEGNGSTFSFYIPR 599 >gi|237748106|ref|ZP_04578586.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379468|gb|EEO29559.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 1068 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 9/267 (3%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + ++L + ++ + E + + AE+ N AKS FL+ MSH++RTP+N I+G Sbjct: 527 HDRLLLTVRDIHEMRLKEERVRQTLTDALMVAEKANNAKSDFLSKMSHDMRTPMNGIIGL 586 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + +I + + + KEY I + HLL LIN++LD+S+I++G+ L +L+ Sbjct: 587 A-MIAEKYR--HDPDRMKEYFSKITVASHHLLGLINDVLDMSKIDSGKIVLVSERFNLVS 643 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++++ + ++ + + + + + V D+ ++QV +N+LSNAVKFT GG + Sbjct: 644 LLKDVVDIVMPDLKSRQHAVRMSVASDVHERVEGDQLRLQQVFMNILSNAVKFTPAGGHI 703 Query: 390 HVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + V + + D+G G+++ + + F + ++ S G GLG+PI Sbjct: 704 GIDVSESPSTFAGYGCYRLVFSDDGIGMSKEYLKKIFVPFEREDNSMTSKISGTGLGMPI 763 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 +++I+ G F + S+ G Sbjct: 764 SKAIVEMMNGSFDVESERGVGSTFTIT 790 >gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 914 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+NAI+GFS + + + P ++Y+ I +S LL +IN+ILD Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDELPPKP----RDYLEKIDQSAHSLLKIINDILDF 345 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQ 370 S+IEAG+ + E L +++ M+ +R +EK +E+ + P ++ D + Q Sbjct: 346 SKIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQ 405 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQ 426 V++NL +NAVKFT G + + V +IKD+G G+ E +I + F Q Sbjct: 406 VLINLTNNAVKFTEQ-GEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQ 464 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNF---I 481 + + G GLGL I + ++ + GG+ + S +G I P + + Sbjct: 465 ADDSTTRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPRDSQASPRCLL 524 Query: 482 PEDNHESTQYK 492 P + E ++ Sbjct: 525 PPADIECFDHR 535 >gi|257094176|ref|YP_003167817.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046700|gb|ACV35888.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1119 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 138/262 (52%), Gaps = 8/262 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + L + + ++ AE N AKS FL+SMSHELRTP+NAI+GF++++E Sbjct: 709 ELERYRAHLETLVAQRTAELSLAKEAAERANRAKSEFLSSMSHELRTPMNAIIGFAQMLE 768 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + + +I ++ +HLL+LINE+LDL+RIE+GR ELS + +V +C Sbjct: 769 ---YDGELSADQHDSVHEILKASRHLLDLINEVLDLARIESGRIELSLETTDIAAVVDDC 825 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +++ A I + + ++V AD ++Q +LNLLSNAVK+ G + + V Sbjct: 826 RHLIEPLAAPLAITLSTLVPAG-ATVHADRTRLKQALLNLLSNAVKYNRERGSIQIDVEQ 884 Query: 396 T---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 SG Q I + D G GIA + V F + +A S +G G+GL I + ++ Sbjct: 885 QLTASGLRQRICVADTGIGIAPQRLNEVFQPFTRL-LAENSEIEGSGIGLTITKRLVELM 943 Query: 453 GGQFLIRSKLREGVEVIAILPN 474 GG+ S++ G LP Sbjct: 944 GGEIAAESEIGVGSRFWIDLPA 965 >gi|90020053|ref|YP_525880.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89949653|gb|ABD79668.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 498 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 12/328 (3%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF------KSNV 212 L A+ L+ + +++++ + S V L L+ S L + Sbjct: 176 LASALNLTIWVLIISILSMLFASSWVQQRVLFRRLSKFESLIASEVEQLTGSKLVKRDGD 235 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +I QA ++ E A + + AE N AKS FLA+MSHELRTPLN+I+GFS+ Sbjct: 236 EIDGIQANFLTMLQEKHEADVEREMALEAAEASNQAKSDFLANMSHELRTPLNSIIGFSK 295 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 I +E +G I RSG+HLL LIN++LDL++I+AGR E+S L + Sbjct: 296 RILKTQ--ENLDERQVHSLGVISRSGEHLLQLINDVLDLTKIDAGRMEISPRPTDLTQVC 353 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 R I Q A K + + +L DE +RQV+LNL+SNAVK++ G + V Sbjct: 354 RYAIEDQQEAAHSKGLRLTLHAPETLVG-EVDELRIRQVMLNLVSNAVKYSEQ-GEIVVA 411 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS-IAIKSAEQGVGLGLPIAQSIMAN 451 + + I ++D+G GI + + F Q + +G GLGL I + Sbjct: 412 LRYV-DDAIEICVEDSGIGIKAEDQKRLFKRFEQFDMQSRMQIGRGSGLGLYIVNEFVRL 470 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479 H G + S+ G LP+ V+ Sbjct: 471 HKGWLKVESEYGRGSRFYVYLPSKAVVE 498 >gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1177 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 165/375 (44%), Gaps = 14/375 (3%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ ++ G +L + + ++A ++AL+I L + + Sbjct: 376 IFVMPVMSRGTALAVLEFASFTAFDDSQKALLEAALPMLALNIEILERNLRTLDLLEESQ 435 Query: 169 PVVVALSTQ---AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 L L ++ + + + ++ + L ++E L Sbjct: 436 TQAEELKASEEELRAQGEALQVANEELRVSEEEL--KVQQEALQTANEELRLKSE--ALE 491 Query: 226 AELEVAKSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E +RA E+ + KS FLA+MSHELRTPLN++L + + G + Sbjct: 492 ERGKALEDARAEADRRALDVEQASRYKSEFLANMSHELRTPLNSVLILARDLADNDTGNM 551 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +++ E IH SG HLL LIN++LDLS++EAG+ L I++ D+V+ Sbjct: 552 SDDQV-ESARVIHESGTHLLALINDVLDLSKVEAGKMTLDPVTIAIADLVQVIRGRFAPV 610 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A +K + ++DP L + AD + Q+ NL+SNA+KFT+ GG V V + T Sbjct: 611 ATDKGLGFQVEVDPDLPRSLKADRGKIEQIANNLVSNAIKFTSEGG-VTVRLSLTGDGHV 669 Query: 402 Y-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +S+ D G GIA + V +F Q G GLGL I++ + GG + + Sbjct: 670 LALSVADTGIGIAPQDRQRVFAAFEQADSGTSRQFGGTGLGLTISRKLARLMGGDITLDA 729 Query: 461 KLREGVEVIAILPNT 475 +G +LP Sbjct: 730 NGDKGSVFTLLLPLA 744 >gi|253578664|ref|ZP_04855935.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849607|gb|EES77566.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 955 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 159/317 (50%), Gaps = 11/317 (3%) Query: 179 IMSMHVLDISLAGMLATALSFFTYIT--YHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + ++L +SL ++ ++ + ++ K + L ELE + Sbjct: 506 FIQDNLLAVSLIVGISIFVALCIILDSLKKSKRAEEKSKKSAEQALKLNQELEEKQQELQ 565 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 A+ N AK+ FL +MSH++RTP+N I+G ++E + E K+ + I+ Sbjct: 566 NALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKSG---NDGERAKDCLNKINE 622 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S + LL+L+N++LD++++E+ S+ +I+L + +E L +A+EK + + + D Sbjct: 623 SSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDD 682 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---VGWTSGRGQY-ISIKDNGPG 411 S VW++ ++++++NL +N++K+ + G ++++ + + IKDNG G Sbjct: 683 YSGIYVWSNAVHLKKILMNLFTNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIG 742 Query: 412 IAEGEIPT-VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 ++E I + T F Q + +S G GLG+PI + ++ GG + SKL EG Sbjct: 743 MSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTV 802 Query: 471 ILPNTRVLNFIPEDNHE 487 ILP N E+ + Sbjct: 803 ILPFKIDTNARLEEKED 819 >gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1260 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 149/283 (52%), Gaps = 8/283 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + F L V+ L A+ + LE + + + A+ + AK+ FL+ Sbjct: 833 GEVVSFVLSFMLLSDDQVEKLELDAKIAEQNDLLEKQQVMLQKALSMAQSSDRAKTTFLS 892 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSH++RTP+NAI+GF+++ + +Y+ + +S HLL+LIN++LD+SRI Sbjct: 893 NMSHDIRTPMNAIVGFTDLAMAHI---DEKDQVLDYLHKLGQSSNHLLSLINDVLDMSRI 949 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E+G+ LSE L++IV ++Q KN+ ++D S S + D+ + QV+LN Sbjct: 950 ESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEMDISESGIVCDKLRLNQVLLN 1009 Query: 375 LLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 +LSNA+K+T GG +H+ + I+DNG G+ + T+ F + + Sbjct: 1010 VLSNAIKYTQAGGSIHMHISEKESMKPDSSMYEFRIRDNGMGMNPDFLKTIYEPFTRANS 1069 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + S QG GLG+ I ++I+ GG+ I S+ +G EV+ L Sbjct: 1070 STVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKGTEVVIDL 1112 >gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 1326 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 31/376 (8%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L + +++L F + L + + I++ + L A + Sbjct: 762 VLGVIELASLRPFTSLHLDLLERLKETIGVDVNTIVANSRTEALLGESQHLAQELQAR-S 820 Query: 205 YHLFKSNVKILSCQAEKDDLIA-------ELEVAKSLSDETRKRAEE-------ENLAKS 250 L + +++ E ++ A ++E+ ++ R+ EE + KS Sbjct: 821 EQLQRQQIELQRSNTELEEKAALLASRNRDIELKNIEIEQARQELEERAHELSQASTYKS 880 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ G L + IH +G LL LIN++LD Sbjct: 881 DFLANMSHELRTPLNSALILAKLLADNMEGNLT-PQQVDLAKTIHSAGTDLLQLINDVLD 939 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 LS++EAG L + L ++ + + ++K +E + PSL + D + Sbjct: 940 LSKVEAGHMSLLPEDVELSELTEHVESLYRPLTEDKGLEFSVVLSPSLPPSLRTDRNRLE 999 Query: 370 QVILNLLSNAVKFTAIG-----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 Q++ N+LSNAVKFT G V V ++ R +++D G GI ++ Sbjct: 1000 QILRNMLSNAVKFTDKGKVELRIRPAPATEVTVPALRSAARRVAFAVRDTGIGIPSDKLS 1059 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q G GLGL I++ + GG+ +RS + G LP + Sbjct: 1060 RIFEAFQQLDGTTSRKYGGTGLGLSISRELTTLLGGELQVRSDVGVGSTFTLYLPVETEV 1119 Query: 479 ---NFIPEDNHESTQY 491 +PE + Q Sbjct: 1120 VGGELVPEPARDGGQQ 1135 >gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17] gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4] gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4] gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17] Length = 611 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 375 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 432 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 491 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + IS+ D G GI + + + Sbjct: 492 MDADKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 550 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG +S+ +G + LP + Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMAKEEE 607 >gi|84385456|ref|ZP_00988487.1| signal transduction histidine kinase [Vibrio splendidus 12B01] gi|84379436|gb|EAP96288.1| signal transduction histidine kinase [Vibrio splendidus 12B01] Length = 574 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 10/293 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L A + + RK AE N AKS FLA MSHELRTPL Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVTARKDAERANKAKSEFLAMMSHELRTPL 225 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+G + ++ + N+ + + ++ S + LL +I+++LD S+IE+G + L+ Sbjct: 226 NAIIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 ++ D V + + A +K + + D P + D + Q++ NL+ NA+KFT Sbjct: 282 WSNVRDTVTFVLSEQKKTADDKGLALTVTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VHV++ + YI+++D G GI+ ++ ++ + F Q I G GLGL Sbjct: 342 ER-GHVHVSIKYLQSSF-YITVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP--EDNHESTQYKC 493 I + ++ G+ + S+ +G + LP TRV N + E++ S + + Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVQLPVLTRVTNNLAHCEEDKSSRELRS 452 >gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 807 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + E +++AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 567 ITQLKETECKLMEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSGLVSET----EDP 622 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + KEYI + + LL LI++ILDLS+IEAG ++ I++ + + + LQ++ + Sbjct: 623 DERKEYISIVEANNNLLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTSLQMKLK 682 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ + + +D + QV+ N ++N+VKFT G + V G Sbjct: 683 -PGVELVFDRNLPEYHIVSDRNRLYQVLSNFVNNSVKFTFK-GSIKVGYEKVDGMRLRFY 740 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIA + V F + S G GLGL I +SI+ GG + S+ + Sbjct: 741 VSDTGLGIAPDKQKAVFDRFVKL----NSFVPGTGLGLSICKSIIQQLGGTIGVDSEEGK 796 Query: 465 GVEVIAILP 473 G ILP Sbjct: 797 GSCFWFILP 805 >gi|312217907|emb|CBX97854.1| similar to two-component histidine kinase [Leptosphaeria maculans] Length = 1300 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 16/290 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++A L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 700 EMDELKRKINQMVASLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 759 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 760 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTL 815 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L RA E+ + + ++ + V D +RQ+ILNL+ NA+KFT G V V Sbjct: 816 FNALKSLASRANERKLNLAYDVNHKVPDYVIGDSFRLRQIILNLVGNAIKFT-ELGEVKV 874 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + + ++ D G GI ++ + +F Q + G GLGL I Sbjct: 875 AISMAQDQECGPDQYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 934 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 ++ ++ GG+ + S +G RV PE + Q Y Sbjct: 935 SKRLVTLMGGRMWVESDFGKGSVFYFT---CRVRLGKPEISAIQPQLMAY 981 >gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 641 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 131/304 (43%), Gaps = 16/304 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRKRA 242 + L +++ + L + Q E EL + R +A Sbjct: 319 RPLVLDVLISPLRDRNGRLRGRLIVWHDITRLKQIEEVLRQRNDELTALQQTLMVARDQA 378 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + AKS FLA MSHE+RTPL+AILG++++I L+ + Y+E + IH S QHLL Sbjct: 379 EAAHRAKSAFLAHMSHEVRTPLSAILGYTDLIRLD-LTRRGQSVYQEELEAIHASAQHLL 437 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +IN ILDLS+I+AGR L S+ +V + A + P + Sbjct: 438 TMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARNGNSLTVIRAPDADLMT 497 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------------SGRGQYISIKDNGP 410 +D+ +RQV+LNLLSNA KFT G + + + I D G Sbjct: 498 SDKTKIRQVLLNLLSNAAKFT-ENGAISLRIWRELSLSPAMKAIDDGADWIVFEIADTGI 556 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA +P + F + A G GLGL I++ GG + S +G Sbjct: 557 GIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGGDITVASAPGKGTTFTV 616 Query: 471 ILPN 474 LP Sbjct: 617 RLPA 620 >gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC 367] gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus brevis ATCC 367] Length = 618 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 8/233 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + A+ F++++SHELRTPL ++ + E + + + +++ ++ +I Sbjct: 375 DQARREFVSNVSHELRTPLTSVRSYIEALSEGAW--KDPKVAPDFLKVTQEETDRMIRMI 432 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPSLSS 360 N++L LSR+++G ++ ++L ++ + + ++ + I + Sbjct: 433 NDLLTLSRMDSGTQKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLW 492 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D QV+ NL++NA+K++ GG V + T +S+ D G GI +IP + Sbjct: 493 VEIDTDRFTQVLDNLMNNAIKYSPDGGVVTARLLETHNN-VILSVSDQGLGIPRADIPRI 551 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A A+ G GLGL I++ ++ GG+ + S+ G LP Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604 >gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB] Length = 620 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 16/374 (4%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 + + + L+++ + + + +L ++ + Sbjct: 118 AVPITVSGESFGQIQFGIDIAPFTLALNRTQRWFMALSALEMGLVAFFSLILGTYLTRQL 177 Query: 185 LDISLAGMLATALSF---FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRK 240 + A F + + EK I+ L +K+ + ++ Sbjct: 178 TALRNASREIAEGRFDRPLKIDGNDELAETAQAFNHMVEKVAGSISSLRESKAKLRQAKE 237 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE N AKS+FLA+MSHELRTP+ I+G S ++ + +E +++ I RS Sbjct: 238 EAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTEL----DEQQRDFADTIQRSANA 293 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILDLS IEA + L+ + S ++ E + ++ A KNI + +I L Sbjct: 294 LLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKNISLISQIADDLPE 353 Query: 361 VW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGE 416 + D +RQV+LNLL NA+KFT G + V T Q ++D G G+ G Sbjct: 354 ILVGDAIRLRQVLLNLLGNAIKFTEQGSVTLEVAHQPTDDGRQRLNFVVRDTGIGMTPGV 413 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472 + + T F Q ++ G GLGL I++ ++ G+ S+ G L Sbjct: 414 VNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESEPDVGSTFRFHIVADL 473 Query: 473 PNTRVLNFIPEDNH 486 P T V P+ Sbjct: 474 PETSVAEEQPQKAD 487 >gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 1011 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 98/465 (21%), Positives = 172/465 (36%), Gaps = 33/465 (7%) Query: 38 ITLHVESLFRVSPILP----LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 T + LF +S +P V T + I LAV A L + Sbjct: 327 RTAFGDGLFSLSQPIPETDWTLVQTFTLRSLLATIGLRAGWYVAIMLAVIALVWWLLVRF 386 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 +K + ++ + P + + A + L Sbjct: 387 DRRVLKPDDAR--TRRVIDSENLNRTI---------VEAAPSGIALLSLADGAVLLQNDT 435 Query: 154 LSNFMLPYAVFLSFFPVVVA---LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + ++ A S ++ S A L ++L + + F+ Sbjct: 436 MRDYDARRAGEPSLPARLLEHFDRSPAAAAWQPDLHVTLPTAGGETVDLLVNLVRTRFRD 495 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 +L ++ + + ++ FLA+MSHE+RTPLNAILG Sbjct: 496 TDVVLCNFSDITSQKNIERQLDEAARAADAANDAKSA----FLATMSHEIRTPLNAILGN 551 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 E+I E + T +E + + + LL+LIN+ILDLS+IEAG+ + L + Sbjct: 552 LELIGREPLAA----TQRERLQTVEGASSVLLDLINDILDLSKIEAGQMTIEAIPFDLAE 607 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +R+ M + A K ++ +D +L D +RQ+ NL+ NA+KFT G + Sbjct: 608 TIRQTGAMFEPLATAKGLQFDVFVDDALPARYLGDPTRIRQIAANLVGNAIKFTNH-GEI 666 Query: 390 HVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + V I + D G G+ + + + F Q +I G GLGL + Sbjct: 667 TLEVYLRDDTDPASPIAIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALT 726 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + + G ++S+ +G + LP + H++ Q Sbjct: 727 KQLTQMMHGTVDVKSEPGKGSTFVVTLPLRPATDAQ-VAEHDAAQ 770 >gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1829 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + +LV G L E L + +L + ++ Sbjct: 1192 FRPGEALIGTAAQEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGNVLGVIELA 1251 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + + F FL+ ++A S I ++ L + + Sbjct: 1252 SFTPFTQIQKDFLNQIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKA 1311 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1312 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1371 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1372 LRTPLNSLLILAKLLADNADSNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1430 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1431 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1490 Query: 379 AVKFT----------AIGGRVHVTVGWT----------SGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V V + S+ D G GIA ++ Sbjct: 1491 AVKFTDSGAVELVIRPAGADVPVAIREQLLEAGSLRDADAGLIAFSVTDTGIGIAASKMR 1550 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1551 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1606 >gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 885 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 12/265 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++L+ +S K A+ N AK FLA+MSHE+RTP+N ++G SE+ + + Sbjct: 213 RDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETEL--- 269 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + Y+ + + G LL+L+N++LD S+IEAG+ L + + ++ E I Sbjct: 270 -DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGT 328 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 ++K IE+ D + V D ++Q+ NLL NAVKFT G + ++ Q Sbjct: 329 VKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAVKFTEA-GEIVLSAHIVERSAQ 387 Query: 402 ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++D G GI+E + +SF Q ++ G GLGL I + + G Sbjct: 388 LAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMAGSLS 447 Query: 458 IRSKLREGVEVIAILPNTRVLNFIP 482 + S++ EG +P L+ P Sbjct: 448 VDSRVGEGSTFTLEVPFE--LSSTP 470 >gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 425 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 139 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 198 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 199 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 257 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 258 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 317 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 318 LIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 377 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 378 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 418 >gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 768 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 15/253 (5%) Query: 226 AELEVAKSLSDETRKRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 A + K + E R +A EE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 524 ALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 579 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E KE+ I + + LL L+N+ILDLS+IEAG+ + S ++ + R Q R Sbjct: 580 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 639 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 ++ + ++ +I +++++ + QVI N L+NA KFT G + +G+ G Y Sbjct: 640 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 695 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI +P V F + S QG GLGL I Q+I+ N G+ + S+ Sbjct: 696 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVDSEE 751 Query: 463 REGVEVIAILPNT 475 +G +P Sbjct: 752 GKGSTFWFTIPCA 764 >gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1] Length = 1370 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS+FLA+MSHE+RTP+ +LG +E++ MG ++ +EY+ +I S LL +IN Sbjct: 795 RLKSQFLANMSHEIRTPITGVLGMAELL----MGMELDQEQQEYVENIQSSATSLLTVIN 850 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWA 363 +ILD S++E+GR ++ E SL IV+E MLQ + KN++ + + V Sbjct: 851 DILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVGDGIENDLVVIG 910 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D +RQ++ NLL+N++KFT G V +V S++D+G GI + Sbjct: 911 DPGRVRQILTNLLTNSIKFTNQ-GYVRFSVVAEKETSETIEVKFSVEDSGIGIQDDVRKK 969 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F QG + G GLGL I ++++ G+ + SK+ G +P + Sbjct: 970 LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLESKVGVGTRATFWVPFNK 1026 >gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] Length = 806 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + R +AEE + KS FLA+MSHE+RTPLN+I+GFS ++ + Sbjct: 567 ITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAET----DDR 622 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EYI + + + LL L+++ILDLS+IE+G ++ S + + + + I ++++ Sbjct: 623 EERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSMEMKVP 682 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +F+K P ++ D+ QVI N ++NA+KFT G + + T+ Sbjct: 683 ETVDLVFEKYMPD-CHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHEIKFY 740 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + +I ++ F + + QG GLGL I +S+++ GG+ + S E Sbjct: 741 VRDTGFGIPKEKIDSIFERFVKL----NTFVQGTGLGLSICKSLVSQMGGKIGVESTEGE 796 Query: 465 GVEVIAILP 473 G P Sbjct: 797 GSCFWFTHP 805 >gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01] gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01] Length = 806 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229 ++ L +L YI + + KI E LI + Sbjct: 274 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSDDEIGQLIEKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 334 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E + I+ + Q EK + Sbjct: 390 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLR 449 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 P+ D+ +RQV+ NLL+NAVKFT G V V + +G + + Sbjct: 450 FRVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELAEKSSKAGTKLILKV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GGQ ++ S+ G Sbjct: 509 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAG 568 Query: 466 VEVIAIL 472 + Sbjct: 569 TTFTVEI 575 >gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1] gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1] Length = 932 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 14/280 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + + + + + LEV + R +A N AKS FLA++SHELR Sbjct: 241 RLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELR 300 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+I GF ++ + + + Y+ I +S HLL LIN++LD S+I+AG+ EL Sbjct: 301 TPLNSIDGFIHLMLRQ---QNLSNEQRLYMQTIRKSSAHLLALINDVLDFSKIDAGKLEL 357 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 +A +L + + + + ML A +K+I++ ++ V D ++Q++ NL+SNA+ Sbjct: 358 ETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGDNIPEIVIGDALRVKQILTNLISNAI 417 Query: 381 KFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V V + S++D+G G++ + + SF QG ++ Sbjct: 418 KFTPD-GEIIVRVRMEHDDIDQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFG 476 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKL-----REGVEVIAI 471 G GLGL I++ ++ G +G Sbjct: 477 GTGLGLAISKQLVQLMHGHIGFEDNQERAPTEKGSTFWFT 516 >gi|89074574|ref|ZP_01161046.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34] gi|89049678|gb|EAR55237.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34] Length = 971 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 162/366 (44%), Gaps = 24/366 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 I A +LI + + I +++ G Sbjct: 344 AIGLLALVLIMWRFVYARVICRINEYSRALSALTRGDLGVRINVKGDDELAQMGRAILVA 403 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIA--------ELEVAKSLSDE-------TRKRA 242 Y L ++ K E + ELE +E R A Sbjct: 404 RETANERYRLAQAESKARQELQEHKASLERLVAKRTGELEKINRRLNEEVYNHYKARDEA 463 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA+MSHE+RTP+N +LG + ++ + K Y+ I+RSG+ LL Sbjct: 464 EKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQLTS----QQKRYLDVINRSGETLL 519 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 +++N+ILD S+IEAG ++ S S++ +V + ML+ R+ K I + I P + VW Sbjct: 520 DILNDILDYSKIEAGHLDIRSSNFSVVRMVTDVSNMLEGRSLAKRIGLECHISPQVEGVW 579 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPT 419 DE +RQV++NL+ NA+KFT G+V + V S+KD G GI E Sbjct: 580 FGDESRIRQVLVNLVGNAIKFTDT-GKVSIFVEPHPDMPDELLFSVKDTGIGIDEEAQSL 638 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + ++F Q + KS +G GLGL I++ I+A G+ + S + EG LP Sbjct: 639 LFSAFQQAAAGRKS-IEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLEHGEG 697 Query: 480 FIPEDN 485 + D+ Sbjct: 698 SLETDD 703 >gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 626 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 153/344 (44%), Gaps = 8/344 (2%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 + I + L+ ALS +L Y VF +A+ A ++ L Sbjct: 280 GQKWVILAVSPLVDALSPLVEIRRVLFYMVFALLTASFLAVLYIAWELARPVE-KLRDYA 338 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + L ++ D++ L+ + A+ N KS FL Sbjct: 339 INKANLNAKQPMRLNFRIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFL 398 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+ SHELRTPLN I+G +++ + E E++ ++ HLL +I+++LDL++ Sbjct: 399 ATTSHELRTPLNGIIGCLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAK 456 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEAG+ +S + L ++ E I + + Q+K + + KI+P V AD K ++QVIL Sbjct: 457 IEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVIL 516 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 N+L NA+KFT G + + I++KD G GI + + F + Sbjct: 517 NVLGNAIKFTEK-GNITIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGS 575 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 G GLGL I++++M GG + S+ + G V LP Sbjct: 576 TTRKYSGTGLGLAISRNLMQLMGGNITLSSEGIDLGTTVKICLP 619 >gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1174 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 94/268 (35%), Positives = 153/268 (57%), Gaps = 13/268 (4%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 ++ + + IAE ++A+ + A+ NLAKS FL+SMSHELRTPLNAILGF Sbjct: 660 AIQQCTLFEQAKTEIAERKLAEQALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGF 719 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+V+ ++ +++++ I+R+G+HLL+LIN+IL++S+IEAG+ +L+E++ +LI Sbjct: 720 SQVMVRDSSLKN---EHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIR 776 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + +L+A+ K +++ + + V DE +RQV++NL+ NA+KFT G V Sbjct: 777 LLGTLEEIFRLKAESKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTET-GSV 835 Query: 390 HVTVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + V S I+D GPGIA E+ + F Q KS QG GLGL Sbjct: 836 TLRVKLKSENEISSLALPLQFEIEDTGPGIAAEEMNKLFAPFEQTKTGQKSQ-QGTGLGL 894 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIA 470 PI++ + GG + S + G + Sbjct: 895 PISRKFVQMMGGDISVTSTVGLGSKFAF 922 >gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 536 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 11/367 (2%) Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + I + ++ L P Y+ + K + + S Sbjct: 9 LYAILDAVGMAVIVLEVGDDGVPRYIAMNKRSREFTKIPQEGWYGKSALEIFGGSTGERA 68 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV- 230 +A+ T S + +F S K+ +D+ +E E Sbjct: 69 LAIHTSVARSAKKKTYEINLPAVQGTRHIRTTMTPVFDSTGKLTHMVGSTEDVTSERERD 128 Query: 231 -AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A L+ +++AEE N AK RFLA+MSHE+RTP+N ILG E+++ + ++ Sbjct: 129 AALELTRIAKEKAEEANKAKERFLANMSHEIRTPMNGILGICELLKETEL----DKEQSL 184 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I S LL +IN++LD S+I A + L SL ++ E ++L + K ++ Sbjct: 185 FADTIFNSTNALLEIINDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLSAKTAYKGLK 244 Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISI 405 ++ S+ D +RQ++LNL+ NA+KFT G V +TV + I Sbjct: 245 FNVNYPENVPSLFIGDVSKVRQILLNLIGNAIKFTDE-GHVSITVSHGQGSPAGPLQFEI 303 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI ++ T+ ++F + S K+ +G GLGL I+Q+++ GG+ ++S G Sbjct: 304 ADTGCGIEASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEISVKSTPDLG 363 Query: 466 VEVIAIL 472 L Sbjct: 364 TTFRVSL 370 >gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] Length = 1586 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + AE+ AKS FLA+ SHE+RTPLNAILG + ++ E++ E+ + Sbjct: 825 EQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL ++N++LDLS+IEA L + L + + E + +A+ KN++ Sbjct: 881 DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFK 940 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402 ++ L V AD +RQ++ NLLSNA+KFT++ G + + V Sbjct: 941 LEMGADLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRVEVIDKFSWNGAEKNIVR 999 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 SI D G GI+E + F Q + G GLGL I ++ G+ + S Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1059 Query: 463 REGVEVIAILPNTRVLNF 480 +G A +P + + Sbjct: 1060 GQGSTFWAEMPLQTLSDE 1077 >gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 826 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K+ FLA+MSHE+RTP+N I+G ++++ + E ++Y+ I S + LL +I Sbjct: 448 DRTKTEFLANMSHEIRTPMNGIIGMADLLSETAL----PEEQEQYVQIIRTSSKALLKII 503 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDL+R+E+G+ L L + + +L+ A+EK + + L V AD Sbjct: 504 NDILDLTRMESGKLSLEPVDFDLERCIESAVDILRPVAREKGLTLNVNYATDLPKSVRAD 563 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLT 422 + +RQ+++NL+ NAVKFTA GRV V V I ++D+G G+++ ++ + Sbjct: 564 DGRVRQILVNLVGNAVKFTAS-GRVDVRVLRAQSDPYRLTIDVQDSGIGMSQAQLNNIFD 622 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q A + G GLGL I++ + G + S+ +G + Sbjct: 623 RFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHSEPGQGSCFSLYI 672 >gi|157285953|gb|ABV31705.1| histidine kinase [Botryotinia fuckeliana] Length = 1315 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ ++D S+ V D +RQVILNL+ NA+KFT G V + Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866 Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + D G GI ++ + +F Q ++ G GLGL I Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ G ++S+ +G Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953 >gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] Length = 356 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 99/233 (42%), Positives = 145/233 (62%), Gaps = 2/233 (0%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +RAE N AKS FLA+MSHELRTPLNAI+GFSE++E GPL + Y+EY DI+ SG+ Sbjct: 113 ERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSARYEEYATDINSSGK 172 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +LL +IN+ILD+S+IEAG++ L + I L ++ E + ++ L+A +K I + +I +L Sbjct: 173 YLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADAL- 231 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 S++AD + ++Q+++NLLSNAVKFT GG + V T ++I+DNG GI + + Sbjct: 232 SLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNT-SGALVLTIEDNGCGIPKEALGK 290 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q G GLGL I++S+ GG IRS G V + Sbjct: 291 LGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRI 343 >gi|167645279|ref|YP_001682942.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347709|gb|ABZ70444.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 573 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 96/431 (22%), Positives = 169/431 (39%), Gaps = 25/431 (5%) Query: 47 RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106 R+ P + L A + I W ++ Sbjct: 5 RLLPSRFIPATLTAVAVIFALGPVIAFSWLAALACGEGLARLATRQFKAGVRGSHRQRAA 64 Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 ++ + I L W L + PE + + + + + Sbjct: 65 ---FVLAALPINLAWAGLGALLWLAPAPELKMAAVAIWVGQIVYTQNFRHQPAALLAVSA 121 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 F P+ L + + L + ++ + Sbjct: 122 FAPMTSLLVFPLFFYDAHGTAANVAR------------WGLMAVVLTTINVMLSNRAAAS 169 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ++ E R+RA E N AKS F+A SHELRTP+N +LG + ++ + NE Sbjct: 170 RMDALTRNLREERERALEANRAKSTFVAVTSHELRTPMNGLLGMAYALDRSNL----NEA 225 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + ++ + +SG L+ ++N++LDLS+IEAG+ +L A +L D++R + A EK Sbjct: 226 QRRHVRLMIKSGDSLMQVLNDVLDLSKIEAGKVDLDHVATNLHDLIRSAGDAWRDAAAEK 285 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY-- 402 + + +IDPS + AD + +RQV++NL+SN +KFT+ GG + +T S G Sbjct: 286 GLWLRTEIDPSAPAWILADPQRVRQVLMNLISNGLKFTSQGGVTIQLTAARPSDEGVREI 345 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + + D G G+ + SF Q A+ + G GLGL I++++ G + Sbjct: 346 QLRVVDTGIGVTAEFHDRIFDSFTQADNAVSRSHGGTGLGLTISRALARQMDGDLTLEHG 405 Query: 462 LREGVEVIAIL 472 G + L Sbjct: 406 A-SGATFVFTL 415 >gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1168 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 4/291 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + E D L ++ +E + + + KS Sbjct: 440 AHLETQQAELEQTNEKLSEQAQTLADQRDELDQRNTALGRIQAQLEERAEELQRASRYKS 499 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ G L+ E K + I+ +G LLNLIN+ILD Sbjct: 500 EFLANMSHELRTPLNSSLILAKLLAENARGNLDEEQVK-FAESIYSAGNDLLNLINDILD 558 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 ++++EAG+ E+ L ++ + + A+E+ + + L ++ D + Sbjct: 559 IAKVEAGKLEVRPERTPLAGMLESLSDVFEPLARERGLSFEIERQAELPQTLFTDRQRAE 618 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA KFT GG V + V + ++ D+G GIA + + +F Q Sbjct: 619 QILRNLLSNAFKFTDRGG-VTLRVSRHDEQTLAFAVSDSGIGIAPDQQAVIFEAFRQADG 677 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I++ + GG + S EG +LP R+L+ Sbjct: 678 TTNRRYGGTGLGLSISRDLAGLLGGSIGVSSVPGEGSTFTLLLP-ERLLDH 727 >gi|17226812|gb|AAL37947.1|AF396827_1 two-component osmosensing histidine-kinase [Botryotinia fuckeliana] Length = 1315 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ ++D S+ V D +RQVILNL+ NA+KFT G V + Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866 Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + D G GI ++ + +F Q ++ G GLGL I Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ G ++S+ +G Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953 >gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 542 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 6/247 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + + +++AE + AKS FLA MSHE RTP+N ILG ++ GP E Sbjct: 143 ERYRLMAELSKAKQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNGPQETE- 201 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + + + L LI ++LD+S+IEAG EL+ S D++ + + A+EK Sbjct: 202 ---LLSMMKQCAESQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFSAREK 258 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 +++ ID L + +D + +RQV++NL+ NAVKFT+ G V + G + Sbjct: 259 GVKLAVDIDRGLPRELVSDARRLRQVLMNLVGNAVKFTSE-GEVRIHARKFDGCLVEFRV 317 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI+ I ++ +F Q + QG GLGL I + ++ GG + SK+ G Sbjct: 318 TDTGIGISPKYIDSIFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESKVGRG 377 Query: 466 VEVIAIL 472 + + Sbjct: 378 SDFRFTI 384 >gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 24/302 (7%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + ++ K + +L + + + + E++ +AE N AKS Sbjct: 362 LWGLLAAYQLNHPRQWQKVELYLLKQAGAQLGVALQQAELLNQLRESKNKAEAANQAKSA 421 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLNAILGFS+++ + L+ K+ + I+RSG HLLNLIN++L++ Sbjct: 422 FLANMSHELRTPLNAILGFSQLLARDENLTLS---QKQNLNSINRSGSHLLNLINDVLEM 478 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEAG+ L+ + L+ ++ M L+A+ K + + + + ++ DE +RQ Sbjct: 479 SKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNIQKSSKIPLYIYIDENRLRQ 538 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS------------------GRGQYISIKDNGPGI 412 V++NLL+NA+KFT G V + V + Y ++D G GI Sbjct: 539 VLINLLTNALKFT-ESGSVTLRVSTQAISLPEESATHPQNDTTQPSLSLYFEVEDTGIGI 597 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 AE E+ + +F Q S +S +G GLGL I + G ++S+ +G V + Sbjct: 598 AEDELDDIFDAFIQTSSGQQSQ-EGTGLGLAICHHFVNLMQGDIQLQSRQGQGTTVFMQI 656 Query: 473 PN 474 P Sbjct: 657 PV 658 >gi|239993376|ref|ZP_04713900.1| Signal transduction histidine kinase [Alteromonas macleodii ATCC 27126] Length = 641 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 21/351 (5%) Query: 151 ISALSNFMLPYAVFLSFFPVV-----VALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++ L + + + A+ +++ V + + + S + I Sbjct: 157 VTVLQPADALQSFLSTIAWLTSLVTLFAVVIVSLLMGRVTQVFVVSPIEKIKSAASRIAV 216 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 K ++ L E L ++E ++ +A++ N AK+ FLA MSHE+RTPLN Sbjct: 217 DHKKVSID-LQQNDELGSLARDVEAMSGEIEQYVAQAQQANRAKTDFLAVMSHEIRTPLN 275 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 I G + ++ + ++ +Y D+ S L +IN++LDLS+IE+G E+ + Sbjct: 276 GIQGLATLLLDTQL----SDKQHQYASDLKSSASILATVINDVLDLSKIESGMSEVDVTE 331 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 L ++ + I +L A + + K +V +D +RQ+I+NL+SNA+KFT Sbjct: 332 FDLDAMLNDLITLLGTNASANSTRLVYKSKNMESVAVTSDITKLRQIIINLVSNAIKFTH 391 Query: 385 IGGRVHVTVGW-------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 G V ++ S I++KD G GI + + F Q +I G Sbjct: 392 K-GTVTISAKLKQPSQDTVSENHLVIAVKDTGIGIEPDRLEHIFDKFTQSDSSITRKYGG 450 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNH 486 GLGL IA+ + GG + SK+ EG + + RV+ + + Sbjct: 451 TGLGLAIAKQLAQILGGDIKVVSKVGEGSCFTVTAKVQSRRVVESSADSDS 501 >gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria grayi DSM 20601] gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria grayi DSM 20601] Length = 591 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 3/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ F+ ++SHEL+TP+ A+ GF+E + M + K+++G + L LI +I Sbjct: 367 RTEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLGIMKDESDRLHRLILDI 424 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LSRIE +++ + + + E + A++KNI++ + D + Sbjct: 425 LALSRIEQHALPINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIETDNDKL 484 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+I+NL+SNAV +T G V V V + ++ DNG GI EI V F + Sbjct: 485 KQIIINLVSNAVAYTPENGTVKVDVEESP-HEVLFTVADNGIGIPAKEIERVFERFYRVD 543 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 A G GLGL I + + GG+ + S EG LP T+ Sbjct: 544 KARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLPKTK 591 >gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01] Length = 878 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 11/323 (3%) Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 + ML + + ++ L +H S+ L T + + N + Sbjct: 286 SIMLMTSAVMVIIVLLCWLGFGTWYRVHSKLDSIIHSLNTLIHEHVKGEKVVVDGNDEFT 345 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + ++ E +T++ A N AKS FLASMSHE+RTPLN I+G +E++ Sbjct: 346 IFAEQVNRMMEEQNRQTEEILQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILS 405 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + KE + DI S LL L+N+ILDLS+IE+G +LS + ++V + Sbjct: 406 QSDLSDH----QKEVLSDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQS 461 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +I+ Q +A K +E+ +D + + D+ ++Q+I+NL+SNAVKFT G +++ V Sbjct: 462 VILFQSKATSKRLELNINLDERIPARIKVDDHRIKQIIMNLVSNAVKFTEQ-GSINIDVN 520 Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + Q + D G GI + ++ T+ F Q I G GLGL I + ++ Sbjct: 521 YQESTTQKSVFLTFRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLV 580 Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472 A GGQ S G + Sbjct: 581 AMMGGQLTASSSKGIGTSFEFSI 603 >gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1060 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 12/266 (4%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ ++ A K F+A+MSHE+RTP+NAI+G + ++E + ++ + Sbjct: 331 SRHREQLAQQEAARLARVKGDFIANMSHEIRTPMNAIMGLAYLLEQGGL----DDGQRAL 386 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + IH++GQ LL +IN+ILD S+IE+GR EL + SL +++ ++ K++E+ Sbjct: 387 VRKIHQAGQALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLEL 446 Query: 351 FQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405 P + + D + QV+LNL NA+KFT G V V V + + + Sbjct: 447 VVSSAPEQAAHLVGDALRLEQVLLNLTGNAIKFTER-GEVEVRVELEAEQDGMATLLFRV 505 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI + + +F Q + G GLGL I++ ++ GG + S+L +G Sbjct: 506 RDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKG 565 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491 E + +V PE HE Q+ Sbjct: 566 SEFWFRVRLEQV--ERPEAFHERLQH 589 >gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] Length = 1758 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 134/250 (53%), Gaps = 10/250 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 +D ++AE N AK FL ++SHELRTP+N +L ++++E T+ T K Sbjct: 818 RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 873 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ I SG +LL+LIN+ILD S+IEAG+ E+ + S++ ++ I ++ EK + Sbjct: 874 EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNGIRIVSKNIYEKGL 933 Query: 349 EIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYI 403 E+ +DP++ + D + ++Q++LN LSN++KFT G++ + V S I Sbjct: 934 ELCVFVDPNVPVIINGDGRRIKQILLNFLSNSIKFTNE-GQIIIRVKLESENEKESLIKI 992 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D+G GI + + SF Q QG GLGL I++ + GG ++S+ Sbjct: 993 DVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVHVKSEFG 1052 Query: 464 EGVEVIAILP 473 G +P Sbjct: 1053 IGSTFSFTIP 1062 >gi|325288684|ref|YP_004264865.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964085|gb|ADY54864.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 584 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 4/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHELRTP++ I G++E + + +++ I L L Sbjct: 356 LEQMRRDFVANVSHELRTPISLIQGYAEALADHVED--SPVQQDQFMKIIIEESNRLKRL 413 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L+LSR+++G+ +L + I+L + + ++NI+ +I+ +VWAD Sbjct: 414 VEDLLELSRLQSGKADLEKEEINLFQVSEQVKEKYDQLFIQRNIKFKAEINQDAGTVWAD 473 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q++LNL+ NA+ + GG + +T T + + D G GI+E ++P + F Sbjct: 474 KFMFEQIVLNLIDNAICYAP-GGTITLTSARTQKG-IELCLSDTGKGISEEDLPYLFERF 531 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + G GLGL I ++++ HGG + S+ +G + P Sbjct: 532 YRADKSRNRESGGTGLGLSIVKNLVQAHGGIISVESEAGKGTKFSLKFP 580 >gi|269963147|ref|ZP_06177482.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832111|gb|EEZ86235.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 827 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 21/306 (6%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVK------------ILSCQAEKDDLIAELEV 230 ++ L +L YI + + K + E LI + Sbjct: 296 GIIPFLLLCVLVGYYLLNRYIVEPIVRIAQKVDDSKTGGIIDIAYDSEDEIGHLITKFNE 355 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + +++ Sbjct: 356 KTIYLERERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQL----TDEQRKH 411 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + ++ SG H++ L+NEILD S+IE G EL + + I+ + EK ++ Sbjct: 412 LNTLYDSGDHMMTLLNEILDYSKIEQGHIELDNTPFPIESILGSINSVYHTLCAEKGLQF 471 Query: 351 FQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIK 406 + P D+ +RQV+ NLL+NAVKFT G V V + IS+K Sbjct: 472 RIISNVPEGRWYNNDKARLRQVLFNLLNNAVKFTDR-GFVEVELAEHVQNDKTKLTISVK 530 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + F Q + G GLGL I + I + GG ++S+ G Sbjct: 531 DTGIGINPDAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQISEHMGGGITVQSQECIGT 590 Query: 467 EVIAIL 472 + + L Sbjct: 591 KFVVEL 596 >gi|156974588|ref|YP_001445495.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116] gi|156526182|gb|ABU71268.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116] Length = 576 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L +EV S + R+ AE N +K FLA MSHE+RTPL Sbjct: 171 RRFRPLIERAVIDIETKEKLQRIVEVRTSQLAKAREEAERANQSKPEFLAMMSHEIRTPL 230 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++LG +++ T+ E+ E + + S LL +I++ILDLS+IE+ + LSE Sbjct: 231 NSVLGMLDILRQSTL----TESQSEVLNQMECSADLLLAIISDILDLSKIESVSFRLSEQ 286 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 +L D V I + A KN+ + + + W D + QV+ NL+ NA KFT Sbjct: 287 WTNLRDAVTLVISQQKQVAISKNLSFEYQCNLDNNKQYWIDSTRLSQVLFNLIGNASKFT 346 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG ++V+V IS+ D G GI + +I + T+F QG +I G GLGL Sbjct: 347 DFGG-INVSV-IERDGELVISVVDTGIGIPQSKIGHLFTAFHQGDSSITRRFGGTGLGLA 404 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIP---EDNHES 488 I + ++ G ++S+ G +P TR P E NH S Sbjct: 405 ITKHLVEMMRGTISVKSEENVGSHFEIKIPVLTRNNQDRPVKIEPNHPS 453 >gi|71016304|ref|XP_758886.1| hypothetical protein UM02739.1 [Ustilago maydis 521] gi|46098317|gb|EAK83550.1| hypothetical protein UM02739.1 [Ustilago maydis 521] Length = 1356 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 141/282 (50%), Gaps = 11/282 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ S + + + ++ L + + R+ AE N +KS FLA+MSHE+RTP+N I+G + Sbjct: 817 EMDSLKTKINQMVYSLRDSIQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTA 876 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + + + +E + + +LL +I++ILD+S+IEAGR + E SL IV Sbjct: 877 LTLETEL----SRSQRENLVTVSTLAGNLLAIIDDILDISKIEAGRMNVEEIPFSLRGIV 932 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L +RA +K + + ++ P + D ++Q+I NL+ NAVKFT GGRV + Sbjct: 933 FSVLKTLSVRATQKKLNLMYEVAPDCPDPLIGDALRLKQIITNLIGNAVKFTDAGGRVAL 992 Query: 392 TVGWTS---GRGQYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + D+G GI + ++ + +F Q + G GLGL I++ Sbjct: 993 KCKLSKMVGSNQAMLEFCASDSGIGIKQDKLDVIFDTFCQADGSTTRKYGGTGLGLSISR 1052 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 ++ GG +RS +G + + ++ P+ E Sbjct: 1053 RLVNLMGGDLWVRSNYGKGSDFFFTM-VVKLDQISPDQVKEK 1093 >gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110] gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110] Length = 826 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 6/262 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ + + A+ N AK+ FL ++SHELRTP+NAILGFS++++L+ + Sbjct: 322 REITMRKKAEEEIIKAKLEADSANQAKTEFLTNVSHELRTPMNAILGFSQLLKLKL--KV 379 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ EYI I+ + LL+LINE+LD+++ EAG+ EL+ S+ + E I + + Sbjct: 380 DDPLIYEYIDTIYNNSNILLSLINELLDINQAEAGKIELNYCGFSVRQFLGETIKLFSSQ 439 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSG 398 +K + + I+ ++ + D +RQ+++NL+SN++KFT G + + + + Sbjct: 440 LSKKTVNLLIDIEDNVPKFINFDSLRLRQILINLISNSLKFTTKGHIKILISIQELYLNS 499 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I ++D G GI + + + F Q G GLGL I Q I GG + Sbjct: 500 CTLKIFVEDTGIGIKDEDKERIFQVFTQSKGQDNYRYGGNGLGLFITQKITECLGGTITL 559 Query: 459 RSKLREGVEVIAILPNTRVLNF 480 S+ +G I PN +L+ Sbjct: 560 ESEWGKGSTFTIIFPNVEILDS 581 >gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 705 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 12/267 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + AE N AKS FLA+MSHE+RTPLN +LG +++E + Sbjct: 309 ITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETT----DTS 364 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + YI RSG L L+++ILDLSRIEAGR LSE +L + + Sbjct: 365 DEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVSI 424 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SG 398 +K + + + P + V+ DE +RQV+ NL+ NA+KFT G V + V Sbjct: 425 QKRLPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFTDQ-GEVRIEVSTLLPLPPDT 483 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G G+++ + T+ F Q S QG GLGL I + ++A GG Sbjct: 484 VRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLTF 543 Query: 459 RSKLREGVEVIAILPNT-RVLNFIPED 484 S L G +LP R + +P+ Sbjct: 544 ESTLGAGTAAYLMLPFRWRAYSILPDQ 570 >gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1424 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 168/410 (40%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R + V ++ G L L I +L + + Sbjct: 692 RIPVGRSLVGQAARNRRSVTVEELPEGYVSISSGLGHAAPTALVVLPIVVEEQVLGVIEL 751 Query: 152 SALSNFM-LPYAVFLSFFPVVVALSTQAIMSMHVLDIS-----LAGMLATALSFFTYITY 205 +++S F + P + + ++ ++ L L Sbjct: 752 ASVSRFRKIHQDFLAQLMPTIGVNLNTIVANVRTDELLDESQRLTAELQARSEELQVQQD 811 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ + ++E ++ R+ E + KS FLA+MSH Sbjct: 812 ELQRSNAELEEKASLLASQNRDIEAKNLQIEQARQELETRAQQLSLASKYKSEFLANMSH 871 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 872 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 930 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 +++ + L ++ + +K++E P + + D+ +RQ++ NLLS Sbjct: 931 MDVAPERVPLRQLLEYVEATFRPMTTQKSLEFTVATAPGTPADLLTDDSRLRQILRNLLS 990 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V + + + R +KD G GI + ++ T+ +F Q Sbjct: 991 NAVKFTEQGG-VELRIEPAADREVPSGVHRGGPIVAFRVKDTGIGIPQQQLETIFGAFQQ 1049 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG + S +G LP R Sbjct: 1050 ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVAR 1099 >gi|16904238|gb|AAL30826.1|AF435964_1 two-component osmosensing histidine kinase BOS1p [Botryotinia fuckeliana] Length = 1315 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ ++D S+ V D +RQVILNL+ NA+KFT G V + Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFT-EHGEVSL 866 Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + D G GI ++ + +F Q ++ G GLGL I Sbjct: 867 TIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ G ++S+ +G Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953 >gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 1364 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++ + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ + S G E ++ + + P+ E Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SAPPQAQRE 881 >gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74] gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74] Length = 906 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 4/313 (1%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + V A A L +A H+ K++ ++++ + Sbjct: 595 AYADPRLVAYAEKWLAGAIGTASARILVSSVANEEPLSVDEVIHILKASQELMTVNKKLT 654 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 AEL+ +R ++ + K F+++++HE+RTPL +I SE++ + + Sbjct: 655 RKSAELQQMTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQA--DM 712 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +E++ + R + L LIN++LDL R ++GRY LS IS++D+V E + + Sbjct: 713 DESMRQEFLSRVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQL 772 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401 A++K + + + V D + QV++NLLSNA+KF+ G G V V + Sbjct: 773 ARDKQVTLEICPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIR-DERV 831 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++++DNG GI + F Q + +G GLGL I + I+A H GQ + S Sbjct: 832 NLTVRDNGIGIEPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSV 891 Query: 462 LREGVEVIAILPN 474 EG E LP Sbjct: 892 PGEGAEFTCSLPA 904 >gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 598 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R EE F+A++SHEL+TP+ +I ++E + + + T ++ I+ Sbjct: 370 RRLEELRR---DFVANVSHELKTPITSIKSYTETLLDGAIDDKDTAT--SFLTVINNESD 424 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + N+I ++L LS ++ + + + + ++CI+ + L A KN +I +I Sbjct: 425 RMNNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYADMKNQKIVGEISNDKL 484 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D+ QVI+NL+SNA+K+T G + V + + +IS+ D+G GI E ++P Sbjct: 485 PVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKT-FVNDGKCHISVTDDGIGIPEKDLPF 543 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + + G GLGL I +SI+A HGG + S EG I+P Sbjct: 544 IFDRFYRVDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597 >gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 862 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+E + A+ + +K+AE N AKS FLA+MSHE+RTPLN +LG +++ + + Sbjct: 454 RDISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEIRTPLNGLLGMLQLVRMGDL--- 510 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +Y+ SG+ LL +IN+ILDLS+IE+G++EL+ ++ +V+ + Sbjct: 511 -DAERSQYLDVAMNSGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETFRFP 569 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A+ K +E+ + D + + AD+ +RQ++ NL+ NAVKFT G + +++ + Sbjct: 570 ARSKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAVKFTLA-GEIRISLSMPFQTGN 628 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D G GI + + F Q S A K+ G GLGL I + I+ GG+ Sbjct: 629 RGQMEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGSGTGLGLSIVKRIVGFMGGRVR 688 Query: 458 IRSKLREGVEVIAI 471 + S EG + Sbjct: 689 LDSTPGEGTTLTVS 702 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 57/199 (28%), Gaps = 2/199 (1%) Query: 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 +R++ L S ++ + L +A + + L +++ L Sbjct: 24 ERQLEFLVTNSRVSIAANVFNGSLFLA--FLYGHLPTFELLLWYGALVLFSVPRLLVVFF 81 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + V W L +G + G+ W L + P + + Sbjct: 82 FHRLRARLSVVQWSRVLALGTLCSGIIWGLSAPLFFAKLPPLGQAFHILLVGGTLTGAAV 141 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 +LP V + + + +A + + + + + + Sbjct: 142 YLAHLLPNFVLFAIPQALPMQIILMTQAGDPFFRGMALLFFIFTAMMFIMAFRTNRQFAR 201 Query: 214 ILSCQAEKDDLIAELEVAK 232 Q D L+ +L ++ Sbjct: 202 YTLLQLRNDALMEKLNESE 220 >gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1424 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 168/412 (40%), Gaps = 27/412 (6%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 ++ +G+ R + V + L + + L I +L + Sbjct: 691 DRIPLGRSLVGQAARNRRPITVDDLPPAYVTISSGLGQISPTALKVLPIVVDEQVLGVIE 750 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYIT 204 +++++ F + FL + ++ I++ D L Sbjct: 751 LASVTRFTQIHEDFLGQLMETIGVNVNTIVANGRTDELLGESQRLTAELQSRSEELQVQQ 810 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257 L +SN ++ ++E ++ R+ E + KS FLA+MS Sbjct: 811 DELQRSNAELEEKATLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMS 870 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG Sbjct: 871 HELRTPLNSLLILAQLLAQNPSHNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAG 929 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + ++S ++L ++ + +K++E P + + D+ +RQV+ NLL Sbjct: 930 KMDISPERVALRRLLDYVEATFRPMTSQKSLEFTMSTAPGVPVDLLTDDSRLRQVLRNLL 989 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFG 425 SNAVKFT GG V + + + +KD G GI E ++ T+ +F Sbjct: 990 SNAVKFTERGG-VGLHIEPAVDQNIPAAVHRGGAVVAFHVKDTGIGIPEQQLETIFGAFQ 1048 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 Q G GLGL I + I GG + S +G LP R Sbjct: 1049 QADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVARA 1100 >gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 596 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 2/242 (0%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E + F+A++SHEL+TPL + + E + + E ++ + + Sbjct: 356 ELERLESMRREFVANVSHELKTPLTTVKSYVETLLDGA--ADDPEVRDRFLRVVDGETER 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 + L+ ++L L++++ G + + ++V E + L+++A K + + ++DP Sbjct: 414 MARLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPP 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 D ++QV++NLL+NA++FT GG++ V+V ++I D G GI ++P + Sbjct: 474 ALCDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLPRI 533 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A + G GLGL IA+ I+ GG I S++ G V LP R Sbjct: 534 FERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLPAARTAEV 593 Query: 481 IP 482 P Sbjct: 594 RP 595 >gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] Length = 499 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 130/254 (51%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI+++LDLS+IE+ + + + SL ++ + Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKE-QAMKP 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + D ++QV+ N ++NA KFT G +H V + Sbjct: 367 ISEIEIRASFPNEDVYINTDATRLKQVVCNFINNARKFTEK-GYIHFGYAVDPVNADSVN 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 426 IFVEDTGSGIPQECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVESEM 481 Query: 463 REGVEVIAILPNTR 476 +G I LP R Sbjct: 482 GKGSRFIVTLPFER 495 >gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 780 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 L + A LL+ F + + L+ + Sbjct: 286 LQHTGHLSLMYWLFALLLLVGGAGMTIWFSMSISRPLNALSKSFDEIASGNFDQRIDVFG 345 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + + A F + + +L A+ L+D AEE N+A Sbjct: 346 NSELDDLARVFNDMADRLSRSYSEVEEQVRKRTRELQKATMKARKLAD----AAEEANMA 401 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTPLN+I+GFS++++ + ++ + I SG LL LIN+I Sbjct: 402 KSAFLATMSHEIRTPLNSIIGFSDMLQETEL----DDEQCSDLEAIRSSGALLLELINDI 457 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LDLS+IEAG+ L+ ++ L + V+E + + ++K +E+ + L V D+ Sbjct: 458 LDLSKIEAGKSNLNAVSLDLEETVQEVSSLFKHGLRKKGVELEVEFAEDLPQFVTTDKLR 517 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLLSNAVKFT+ G +HV + + Y+++ D G GI E ++ V Sbjct: 518 LQQLLNNLLSNAVKFTSK-GIIHVRAWYEDRKEPEGPRYYVAVSDTGIGIPEHKLEEVFQ 576 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + I GG+ + S+ G Sbjct: 577 AFTQADSSTTREYGGTGLGLAICKRITHLMGGEISVVSRAGLGSTFKFYF 626 >gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 593 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GFSE + M + ++++ IH+ + Sbjct: 355 ELKKLEQVRKDFVANVSHELKTPVTSIKGFSETLLDGAMA--DPAYMEKFLTIIHKESER 412 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI ++L+LS++E + L+ L IV++ + +L+ +A+ K I + S+ Sbjct: 413 LQSLIQDLLELSKLEQHYFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASSV-E 471 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + ++QV +NL+SNA+ +T G ++V+V + ++ DNG GI E+P + Sbjct: 472 MDGDSERLKQVAINLISNAITYTPNHGEINVSVTQ-DHQSILFTVSDNGIGIESSELPRI 530 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + ++ H G+ + S+L G Sbjct: 531 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFTIHF 582 >gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B] gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B] Length = 811 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKI------------LSCQAEKDDLIAELE 229 ++ L +L YI + + KI E LI + Sbjct: 279 GRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDDSKTGGIIDIDYDSDDEIGQLIEKFN 338 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A+ AK+ FLA++SHE+RTP+N +LG ++++ + + ++ Sbjct: 339 EKTIYLEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPL----TDEQRK 394 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ ++ SG H++ L+NEILD S+IE G E + I+ + Q EK + Sbjct: 395 HLRTLYDSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLR 454 Query: 350 IFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI 405 P+ D+ +RQV+ NLL+NAVKFT G V V + +G + + Sbjct: 455 FRVVSHLPTGRWYNNDKARLRQVLFNLLNNAVKFTDR-GIVEVELAEQSSKAGTKLILKV 513 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI++ + F Q + G GLGL I + I + GGQ ++ S+ G Sbjct: 514 KDTGIGISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAG 573 Query: 466 VEVIAIL 472 + Sbjct: 574 TTFTVEI 580 >gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 478 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 162/425 (38%), Gaps = 17/425 (4%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLL 111 L + ++ P+ L + + L L Sbjct: 61 RLLIFASALVLAAYYYSAPLAKFILLFVVISEICDYWL---FNRILKSKEVSTQAARRFL 117 Query: 112 VGQIAIGLCWTLLTLVEPGTW----TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + + + T++ T L A SA+++ + + +F Sbjct: 118 P-HLYLSAFLSTFTIIAYSVGIVVVTGPTNHFVPLFFLFAAALFSAMNSHYIKQVL--TF 174 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 V + ++ I ++ + F I + L+ + +A+ Sbjct: 175 RLVCLGIAFLFIPVRDIVIMEAPLQSELWAQLFISI-FALYFIVESARGYLSVYRAQLAQ 233 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E+ + +++R AKS F+++MSHELRTPL +I G ++ + +G ++ Sbjct: 234 MELLRKEHEKSR----AAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGK-TSKNV 288 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + R+ LL LI++ILD E+G+ L++++ + ++ A EK Sbjct: 289 SAALKMAQRNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKG 348 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I + + + D++ ++QVI N+L+NA+ F+ + V + T I +D Sbjct: 349 ISLRSEFPDREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFL-QTDNGKVRILFRD 407 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G++E + V F Q + + G GLGL +++ I+ HGG G Sbjct: 408 TGIGLSESDEARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTT 467 Query: 468 VIAIL 472 + L Sbjct: 468 FVVEL 472 >gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 936 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 85/294 (28%), Positives = 141/294 (47%), Gaps = 23/294 (7%) Query: 214 ILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ +EK DL+ + ++ S + ++E+LAKS+FLA + HELRTPLNA+ G + Sbjct: 237 LIQTLSEKQDLLDQQHLSSEQESQTSLHLLQQESLAKSQFLAMVGHELRTPLNAVTGMTG 296 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + +E+I I SG+ LL +IN ILD ++IEA + EL E+ L + Sbjct: 297 LLLDTKLTN----QQREFINIIRNSGETLLTMINNILDFAKIEANKLELEETPFELGQSI 352 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E + + +A E+ +E+ I+P ++ D ++Q+++NLLSNAVKFT G V V Sbjct: 353 EEALHLFVPQASERKLELAYLIEPHTPNAIIGDVTRLKQILVNLLSNAVKFT-ESGEVVV 411 Query: 392 TVGWTSGR---------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 V T ++KD+G GI ++ + SF Q + Sbjct: 412 YVNATPVTQHPVTPQKDKSSPLYEIRFAVKDSGIGIPREKMDRLFKSFSQVDASTSRKYG 471 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G GLGL I++ + GG+ S +G + + N S + Sbjct: 472 GTGLGLAISKRLTEMMGGKMWFHSVEGKGSTFYFTV-IAQAAPSSSLANSPSAE 524 >gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] Length = 1345 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 142/279 (50%), Gaps = 23/279 (8%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A+ + +++AE+ AKS FLA+MSHE+RTP+NAILG ++E +++ P + + Sbjct: 594 KQAEEALVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLSPTS----R 649 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + IH +G+ LL +IN++LD S+IEA + + L D++ ++ K + Sbjct: 650 EMVQKIHAAGKTLLTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPL 709 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QY 402 E+ P + + D + QV++NL SNA+KFT G V V V G Sbjct: 710 ELVVGPPPDGANYLIGDRLRLGQVLVNLASNAIKFTGQ-GEVEVRVDRLPDTGNGRVMLR 768 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S++D G GIA + + +F Q + + G GLGL I++ ++A GG+ + S Sbjct: 769 FSVRDTGIGIAPDKQEMIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAP 828 Query: 463 REGVEVIAILPNT---RVLNFIPE---------DNHEST 489 +G LP + + +P+ D+HE+T Sbjct: 829 GQGSNFHFELPFELSNPMDSALPDMAHLRVLIADDHEAT 867 >gi|323486812|ref|ZP_08092130.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum WAL-14163] gi|323399825|gb|EGA92205.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum WAL-14163] Length = 1032 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 138/260 (53%), Gaps = 10/260 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + RA+ + AK+ FL+ MSHE+RTP+NAI+G + + N E E + + S Sbjct: 642 KARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS---AAGNKEQVLECLEKLDNSS 698 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++LL+L+N+ILD+SRIE+G+ EL+ + + L + M++++ + K + + D Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQTEAKGLSFTIQNDCRT 758 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 + AD+ + QV+LNL+ NA+KFT +GG + + + S+ D G GI+ Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471 +P++ +F QG+ I S G GLGL I+ ++ GG ++S+ G E Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878 Query: 472 LPNTRVLNFIPEDNHESTQY 491 LP + V E +ES Y Sbjct: 879 LPYSEVPAPQHEILNESPSY 898 >gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1351 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 38/317 (11%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++L A+ E + E R A AKS FLA+MSHE+RT Sbjct: 624 LNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSEARDEALAATRAKSEFLATMSHEIRT 683 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NA++G + ++ + + ++++ I S LL+LIN+ILD S+IE+G+ +L Sbjct: 684 PMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLE 739 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 SL + E + +L +A K++E+ ID V D +RQ+++NLLSNAVK Sbjct: 740 AFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVK 799 Query: 382 FTAIGGRVHVTVG---------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 FTA G V V+V +++ +++ D G GI + + SF Q Sbjct: 800 FTAR-GEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQ 858 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-----------------KLREGVEVI 469 + G GLGL I+Q + GG+ + S +G Sbjct: 859 VDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFY 918 Query: 470 AILPNTRVLNFIPEDNH 486 + N +P+ NH Sbjct: 919 FSIVVQSSQNLLPQWNH 935 >gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 678 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 6/257 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +E+ A R+ AE + K FLA++SHELRTPLNA+LG+++++ + Sbjct: 269 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 328 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + +K I I RS + ++LI+++LD+S I +G+ L + L D++ Sbjct: 329 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 385 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ A++KNI I + P + + D ++QV NLL+NAVKFT GG + ++V Sbjct: 386 IEPMARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPE 444 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI +P + F Q ++ G+GLGL IA+ ++ H G+ Sbjct: 445 GVVA-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITA 503 Query: 459 RSK-LREGVEVIAILPN 474 S G + LP Sbjct: 504 ASSGADRGTTMAVSLPL 520 >gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis subsp. subtilis str. 168] gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp. subtilis str. 168] gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5] gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis] gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis subsp. subtilis str. 168] gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto BEST195] gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis BSn5] Length = 611 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + ++ + ++ Sbjct: 371 EKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I ++ + I ++ +E+++E + + V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V ++ YIS+KD G GI + ++ V Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G + LP Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 599 >gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1021 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 14/273 (5%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + + + +AE LI L V + ++ E E + KS F++++SH Sbjct: 569 FNAVQENRVLRVWTGPVLDRAEN--LIGRLYVFRDITIEA-----EVDRMKSEFVSTVSH 621 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL++ILGFSE++ + L+ E +Y IH+ + L +L+N+ LDL R+E G+ Sbjct: 622 ELRTPLSSILGFSELLL---IKKLSEEARTKYTKTIHKEAKRLTDLVNDFLDLQRMELGK 678 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + +D++ E + + +I + + AD++ + QV++NLLSN Sbjct: 679 QVYDKEDFIALDLLAEVVESFAASGVDHDITLQTV---ERFFINADKERVTQVLINLLSN 735 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKF+ G ++ + V IKD G GI + + + F + + + G Sbjct: 736 AVKFSPKGTKITLGVTPDEE-YAKFFIKDQGLGIPKDVQDNLFSKFYRVDNSDRRKIGGT 794 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I + I+ HGG+ + S+ G Sbjct: 795 GLGLSICKEIVEAHGGKIWVESEHGHGSVFYFT 827 >gi|221233697|ref|YP_002516133.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|220962869|gb|ACL94225.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 566 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 99/453 (21%), Positives = 165/453 (36%), Gaps = 40/453 (8%) Query: 31 MDFDREIITLHVESLFRVSP---ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANL 87 F + R P + A I +W L + AA Sbjct: 2 PRFAEWLDQDVTSVTARSLPTLGVRLAICAATALIYALAVDLQGGLLWGLAVASAEAAVF 61 Query: 88 SLGK--KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145 + + + + + W L ++ P Sbjct: 62 ICSSPQRADRKISHAQRLS-----YVAAVAWMNIVWWSLAIMLWRQDHPALRMAALCVVC 116 Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + A + + + + L +++ LA A + Sbjct: 117 AFLVHAQAFTARSKTLLLIVGGGSATLLLVLCGVLNDFPPSERLALCAAAIILIIYTAKA 176 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + +AE + AKS FLA MSHELRTPLN Sbjct: 177 AQTNG-------------------QQGRALELAKSQAEAASQAKSEFLALMSHELRTPLN 217 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +LG S+ ++LE + P +E + + SG+ LL L+N++LD+++IEAG+ +++ + Sbjct: 218 GMLGLSQALKLEPLEPGE----REQVELLEESGRTLLALLNDVLDMAKIEAGKLDIAPTQ 273 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 L + + + Q +A+EK EI +IDP+ + D +RQ + NL+SNAVKFT Sbjct: 274 EDLSRLAERVVRINQAQAREKGTEITLEIDPATPRALLFDPLRVRQCLGNLVSNAVKFTP 333 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G++ V V +G I + D G G+ + + T F Q I G G Sbjct: 334 A-GQIRVRVTCEAGDQPDRMLAKIIVSDTGVGMGPAVLARIFTPFEQADPTIARRTGGTG 392 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LGL I + + GG +RS +G Sbjct: 393 LGLNITRRLAQMMGGSVSVRSTEGKGSTFTLTF 425 >gi|330875680|gb|EGH09829.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 641 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 140/338 (41%), Gaps = 21/338 (6%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 P+ + + + + + H+ + Sbjct: 184 RRLALSLSRPISAMGEALKAIQHGDYH---TPLPISDDAELGALARHINNLAENLHRASL 240 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + + + + R+ AE+ N AKS FLA MSHELRTP+N +LG +++E M Sbjct: 241 E-------QQRSVAQLIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM 293 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 EY S +HLL +IN+ILD SRIE ++ A +L ++V Sbjct: 294 TS----EQSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAF 349 Query: 340 QLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 A ++ + + I P L V D +RQ+++NL+ NA+KFT G V V W Sbjct: 350 NHSALQRKLTLKLHIQPGLEALMVVGDPTRIRQILVNLIGNALKFTEQ-GNVCVEAEWAM 408 Query: 396 TSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + D+G GI + ++ +F Q +I G GLGLPIA+ + G Sbjct: 409 LDNDHLRFTCTVHDSGIGIEADRLESMFDAFRQADSSISRRYGGTGLGLPIARQLAERMG 468 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G +S+ G +P N + + + + + + Sbjct: 469 GTLRAQSQEGSGSVFTLQIPLAVSRNVLADVSEQPSTF 506 >gi|307822393|ref|ZP_07652625.1| histidine kinase [Methylobacter tundripaludum SV96] gi|307736959|gb|EFO07804.1| histidine kinase [Methylobacter tundripaludum SV96] Length = 673 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 13/326 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + +P+ V + + M L I++ + A FF Y L + Q + Sbjct: 125 AYTWIYPLKVGSTVIGVFKMESLHIAMRDLYAQLPLFFNYAALVLKNEILGYTRLQNVNN 184 Query: 223 DLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L E + + + AE N AKS FLA+MSHELRTP+NA+LGFS++++ Sbjct: 185 LLQQEIIIRKQTEQKLLAAKNEAEAANRAKSIFLANMSHELRTPMNAVLGFSQLMQK--- 241 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + +E + I+ SG+HLL LIN++LD+++IEAGR + L ++R+ I M+ Sbjct: 242 DSDLSPEQRETLNIINNSGKHLLELINDVLDMAKIEAGRVIVENGNFDLGALIRDTIDMM 301 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTS 397 RA+ K +E+F S V +DE RQ++LNL+ NA+K+T G + +T Sbjct: 302 HQRAEAKGLELFLDQSSSFPRFVNSDEAKFRQILLNLVGNAIKYTQKGRVIVLLTAENLP 361 Query: 398 GRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 Q + IKD G GIA+ ++P + +F Q +S +QG GLGL I + GG Sbjct: 362 DTQQCLLICEIKDTGIGIAKQDLPFIFDTFVQV--GRESDQQGSGLGLRITKQYAELMGG 419 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480 Q + S+L +G I LP +V Sbjct: 420 QVTVTSELNKGSSFILTLPAAKVDQS 445 >gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 346 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 3/227 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +S F+ ++SHELRTPL +I GF E + M N++T + ++ I L LI Sbjct: 120 DQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAM--ENSDTCRRFLSIIDTETNRLTRLI 177 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++L LS IE+ + L+ +R + M + EK++ + + + ADE Sbjct: 178 EDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPYPMPLIQADE 237 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV +NLL NA+K+T G++ + R ++KD+G GI +P V F Sbjct: 238 DLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDSRIIT-TVKDSGMGIPHESLPRVFERFY 296 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A + G GLGL I + I+ +HGG+ + S++ +G Sbjct: 297 RVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGVSF 343 >gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 841 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 4/260 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E A+ + E R AEE KS F+A+MSHELRTPL +I+GF+E+ + N Sbjct: 584 VSEFRAAEHATHEARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GGLRSHGN 640 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E DIH +GQ +L L+N++LD++++E+ + L ++R + L+ + Q Sbjct: 641 AAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRSLIRPVVRELEPQQQ 700 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K I++ ++D + AD +QV+ N+L+NA+KF+ IGGR+ V I+ Sbjct: 701 HKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDGQGDICIA 760 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D GPGI E+ + F Q S K+ G GLGL I + I+ G + + Sbjct: 761 VSDQGPGIPPQELDKIFQPFVQSSK-TKNGSGGTGLGLAICRKIIDAMDGTIVASNGPAG 819 Query: 465 GVEVIAILPNTRVLNFIPED 484 G LP + P + Sbjct: 820 GAMFCITLPTRNAMETRPAE 839 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1381 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 82/355 (23%), Positives = 133/355 (37%), Gaps = 9/355 (2%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L+ P AL+ + Sbjct: 220 LVEATGLAAGHPAAPATLSLGDPAAPWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPA 279 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRK 240 L + L F +++ E L + A+S + R+ Sbjct: 280 EALLVPLRQQGGAPYGFLVAGLNR-YRALDDGYRGFVELTAGHLATGIASARSYQAQQRR 338 Query: 241 RAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 E E + AK+ F +++SHE RTPL I+G + + G +E + + I R+G Sbjct: 339 AEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELRGRLQGA--DEQVRTELDVIRRNG 396 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L NL+N +LD SRIEAGR + + L + + + + + + P Sbjct: 397 LRLGNLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGLSFEVDCPPLP 456 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +V+LNLLSNA+KFT G + V + G + I D G G+ E+P Sbjct: 457 EPVHLDRGMWEKVVLNLLSNALKFTFD-GTIRVEL-RADGDAAVLRISDTGIGVPADEMP 514 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A +++G G+GL + Q ++ HGG S + G LP Sbjct: 515 RLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFTIRLP 569 >gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 32953] gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two component regulatory system, activates OmpR [Yersinia pseudotuberculosis IP 32953] Length = 942 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|154244942|ref|YP_001415900.1| integral membrane sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] gi|154159027|gb|ABS66243.1| integral membrane sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] Length = 662 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 103/504 (20%), Positives = 194/504 (38%), Gaps = 38/504 (7%) Query: 2 YRSRKNKEKDVGLLISPTGDHLGLEYPS--------------KMDFDREIITLHVESLFR 47 Y+ R+ + + + + L + + ++ LFR Sbjct: 32 YKRRRLSRSEATVTLQRSILSLPPGATPLPSGKPDLRERALEPAAAHDRVQSEQLKVLFR 91 Query: 48 VSPILPLFVLLVANIGTWFTQNP------IFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 +P+ L ++ I + WS I +AV ++L L + Sbjct: 92 NTPVGVLGAMIGGLILAYVLLLHDGVSFDTVATWSAILVAVALSHLVLCWIYWRVAL-PA 150 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + + + + G+ W +++ E T +A ++ LP Sbjct: 151 RLPMLALIFTAISLMEGITWGTGSVLLVSPSRIELQLWVMIVTSAVASGAASAFGSYLP- 209 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 A + FP ++ A++ +L +L + + + + + V+ L + E Sbjct: 210 AFYALLFPAMLPYPVWAVLHGGILSHALMVLDLLYVVAMAALGWRSNRGLVEALRLRFEN 269 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 DL+ E+ ++RAE+ + KSRFLA+ SH+LR P++A+ F ++ + Sbjct: 270 IDLLVEVRN-------EKERAEQASRDKSRFLAAASHDLRQPVHALTMFLGAMQNCNLDA 322 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ +G I S L L +LD+SR++AG + A + +V + Sbjct: 323 PA----RQILGHIDESVSALDGLFTSLLDISRLDAGVVQSDSRAFHIQPLVERIVRDYDE 378 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A K I + + P +V AD + +V+ NL+SNAV++T GRV + GR Sbjct: 379 EAARKGIALVVQ--PCSLAVMADPILLERVLRNLVSNAVRYTER-GRVLIGCRR--GRRL 433 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I + D G GI E + + Q A + G+GLGL I + + +RS+ Sbjct: 434 SIEVWDTGKGIPGEEQQRIFQEYYQLGNAERDRAMGLGLGLAIVKRLAELMACPLALRSQ 493 Query: 462 LREGVEVIAILPNTRVLNFIPEDN 485 +G +P P + Sbjct: 494 PGKGSVFAISVPLATSAPEQPAAS 517 >gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1005 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 94/401 (23%), Positives = 166/401 (41%), Gaps = 26/401 (6%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + R + I +G + L + + L + L +S Sbjct: 102 ASGPVPSPAERQLRRPIRYIDIDLGQLEVTIDLRPFIADNLAHHRDLAALLLAMLLGLSG 161 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMH---VLDISLAGMLATALSFFTYITYHLFKS 210 + +L AV +A++ + H L + + + F + L S Sbjct: 162 VMAALLELAVIRPT--HRLAIAAHELAQGHFDTPLPHTSHDEIGNLVDSFASMRSELQVS 219 Query: 211 NVKILSCQAEK----DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHE 259 ++L E+ + L E + + E + AE + KS FLA+MSHE Sbjct: 220 RSELLLEIDERKKAANALQEHQEQLEQIVSERTRELVIAKDAAESASRTKSAFLANMSHE 279 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G + ++ +T P + +++ I+ + QHLL++IN+ILD S+IEA + Sbjct: 280 IRTPMNAIVGLTHLLRRDTTTPKDA----KHLDKINLAAQHLLSIINDILDFSKIEADKL 335 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 + E+ I ++ ++ +A +K +E+ +IDP + V D + Q++ N SN Sbjct: 336 IIDEADFEFEQIFQQLNTLITPQAMDKGLEVVDRIDPEIPAVVHGDAMRLGQILANFASN 395 Query: 379 AVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 AVKFT G + G I D G G+A + + F Q + Sbjct: 396 AVKFT-EHGSIVFRARLLEQIGNLLRIRFEITDTGIGLAPEQRDRLFLPFEQADTSTTRK 454 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ + G+ + S +G LP Sbjct: 455 FGGTGLGLAISKRLTELMNGRIGVDSTPGQGSTFWCELPLQ 495 >gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 953 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 28/271 (10%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + ++ + AE N ++ FLA+MSHE+RTP+ AILG +++++ P N Sbjct: 538 VDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLRDPDN- 596 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+G LLN+IN+ILDLS+I++G+ +L + ++ E ++ +RA Sbjct: 597 ---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRAS 653 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK++ + + D + + D +RQ++LNL+ NA+KFT G V + VG+ + Sbjct: 654 EKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDS-GEVKILVGYDGPGKRAA 712 Query: 402 --------------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 I D G GI + ++ F Q + G GLG Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLG 772 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I + + GG + S +G + + Sbjct: 773 LAICRRLAHALGGDVSVESTYGKGSKFTLTI 803 >gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031] gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031] Length = 999 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 26/311 (8%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSDETR 239 + D LA A F T + + + I + +LI + A++ ET Sbjct: 261 FTLEDHLLAIEKAGLFDFLDSGTDEISRESDLIYRKHQRTALLNLIEDANQARNELIETN 320 Query: 240 KRAEEENLA--------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ EE KS+FLA+MSHE+RTP+N ++G ++++ + Sbjct: 321 RKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIRTPMNGVIGMADLLLETRLST---- 376 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + Y+ I+ SG++LL +IN+ILD S+IEA EL L D++ E +L L A++ Sbjct: 377 DQRNYVEIINGSGRNLLKIINDILDFSKIEARMLELDAIDFDLFDLLEEICGVLGLEARD 436 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRG 400 K +E+ L S+ D +RQ+++NL+ NA++FT GG V + V Sbjct: 437 KGLELLLITGFDLPFSLKGDPARIRQILVNLIGNALRFTPEGGEVVLKVMVQQQTDRNAV 496 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH-GGQFLIR 459 +++D G GI+ ++ + F Q + G GLGL I+ ++ GG + Sbjct: 497 IRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFGGTGLGLSISNDLVLKMGGGGIHVE 556 Query: 460 SKLREGVEVIA 470 S+ G Sbjct: 557 SEPGSGASFWF 567 >gi|89902167|ref|YP_524638.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89346904|gb|ABD71107.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1202 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 106/475 (22%), Positives = 192/475 (40%), Gaps = 49/475 (10%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 + I + A + W TQ + A A K+ I E Sbjct: 495 SALIALGTAFVAAPLIAWATQGRYYMARQSAAPAGGAVGEGACKRYQVQRCVICERQYEG 554 Query: 108 IWLLVGQIAIGLC------------------------W-TLLTLVEP-------GTWTPE 135 + G W L + P Sbjct: 555 PDMAHCPAYQGAICSLCCTLDARCGDLCKPHASLSSQWSATLRWLLPRRSWSYLDNGLGY 614 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 +L + L+A L + L V + A+ S ++A Sbjct: 615 FLLLMGVTVPLLASVFGLLYHQELRALTLSVTDIVQLQAPHAALRSGFFKAYMALLVIAG 674 Query: 196 ALSFFTYITYHLFKSNVKILSCQA--------EKDDLIAELEVAKSLSDETRKRAEEENL 247 ++++ + + + + + Q L+ A+ ++++ R A++ N Sbjct: 675 LVAWWVVLAHKSRQVAQEESNRQTHLLMCEIESHRQTDEALQTARRVAEQARHAADQANQ 734 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKSR+++++SHELRTPLN+ILG+++++ + P++ ++ + I R G+HLL+LI Sbjct: 735 AKSRYISAISHELRTPLNSILGYAQLMGEDPSIPVH---RQQAVSVIKRGGEHLLSLIEG 791 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 LD++ IE+G+ L+ + ++++ + +L AQ K + +L V ADEK Sbjct: 792 TLDIAHIESGKLTLNPRPMHFASLMQDIASLFELEAQAKGLSFRYVEGAALPAVVRADEK 851 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQ+++NLL NA+KFT G+V + + + I I+D GPG++ E+ + F + Sbjct: 852 RVRQILINLLGNAIKFTQK-GQVTFDIRY-AREMAVIDIEDTGPGLSPQELNRIFEPFTR 909 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLN 479 +A G GLGL IA+ + GG+ + S G LP RV + Sbjct: 910 AHTPGATAS-GSGLGLTIAKMLTDLMGGELTVTSTPGMGSVFKVKLFLPEVRVTS 963 >gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 546 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 4/287 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + ++ H ++ +++ ++ L + RAE N AKS F Sbjct: 249 ILGVITLGHREVGHFRSTHTELMQAAGDQIRLALRNAQMLENQRDLVDRAEAANRAKSSF 308 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 +A++SHELRTPLNAILG+S+++ ++ L +E I I +GQHLL+LIN+++DLS Sbjct: 309 IANVSHELRTPLNAILGYSQILSMDI-KQLKRPDLEESIDQITTAGQHLLDLINDVIDLS 367 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 RIE G+ LS S + L ++ I Q A + + + V D +R+++ Sbjct: 368 RIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNSLVLVCPNDIGLVMIDAPKVRRIL 427 Query: 373 LNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 LNL+SNA KFT G V + + I+++D G GI +I + F Q Sbjct: 428 LNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVRDTGIGIHPDQIEDLFNQFIQADS 487 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + G+G+GL +++ + GGQ + S+ G +P T+ Sbjct: 488 SSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGSTFRVHVPVTQ 534 >gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1105 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 7/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + ++ N K FLA +SHELR+PLN ILG+S +++ + Sbjct: 708 LTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRSPLNPILGWSSLLKSRKF---DE 764 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T + I R+ Q + LI+E+LD+SRI G+ L+ + ++L ++ + ++L A+ Sbjct: 765 ATTNRALETIERNTQLQIKLIDELLDVSRIIRGKLNLTFATVNLASVIDAALETVRLIAE 824 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQ 401 K+I+I ++DP++ V D ++QV+ NLLSNAVKFT G V V++ G + Sbjct: 825 SKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKFTPPNGSVEVSLSSSGELASHSA 884 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI+ +P V F Q + G+GLGL I ++++ HGG S Sbjct: 885 LIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLGLGLAIVRNLVELHGGTVTAASP 944 Query: 462 -LREGVEVIAILPNTR 476 +G LP + Sbjct: 945 GEGQGAIFTVRLPVMK 960 >gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1207 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 8/249 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ E K+ F+A +SHELRTPL +I G +I G L I ++ Sbjct: 710 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLIAGGVAGEL-PPRAAAMIDIALKN 765 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ +IE+G+ + L ++VR+ I + Q+ N++I Sbjct: 766 SERLVRLINDILDIEKIESGKMVFKMQPVVLDELVRQTIEANRGFGQQYNVQIELTATLP 825 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V+ D M QVI NL+SNAVKF+ G +V V +G I++ D+GPGI Sbjct: 826 GVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEFR 885 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473 + F Q + + G GLGL I+++I+ HGGQ + G L P Sbjct: 886 DRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERHGGQIGFVTATGVGTTFYVDLAEYRP 945 Query: 474 NTRVLNFIP 482 NT + +P Sbjct: 946 NTTSMPPLP 954 >gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 1350 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + + ++ AE N +KS FLA+MSHE+RTPLN I+GF+ ++ + E Sbjct: 949 NKKETEDAIKAKQLAEAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMKTEL----EEIQ 1004 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++Y+ I++S LL +IN+ILD S+IEAG+ EL + ++ + ++ + +K+ Sbjct: 1005 EKYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVFDLIVFESNQKS 1064 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----Q 401 +++ +D + +W D ++Q+++NLLSNAVKFT G + + V S Sbjct: 1065 LQLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNE-GSIKLNVSVLSKTKNNFCTI 1123 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+ D G GI E + +F Q + G GLGL I+ ++A + + S Sbjct: 1124 RFSVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLALMESRLQLEST 1183 Query: 462 LREGVEVIAIL 472 + EG L Sbjct: 1184 IGEGSNFFFDL 1194 >gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 984 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174 + L LT+ A L++A+ I ++ A L + + Sbjct: 339 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 398 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233 Q + + + A + A + I K L E ++L+ E Sbjct: 399 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 458 Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L++E R AE+ N AKS FLA+MSHE+RTP+N +LG + ++ + PL Sbjct: 459 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 518 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 K Y I+RSG++LL ++N++LD S+IEAG E+ ESA L +V + ++Q R Sbjct: 519 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 574 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A EK++ I+ ++ W D + QV+ NL+ NA+KFT G ++V++ Sbjct: 575 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 634 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA+ E T+ +F Q S K A G GLGL I++ I+ GGQ + S Sbjct: 635 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 693 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + EG +P T P Sbjct: 694 EEGEGSRFWFTVPLTPCDAVEP 715 >gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 960 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 132/279 (47%), Gaps = 7/279 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + I E + + + +AE N AK FLA+MSHE+RTP+ Sbjct: 550 RWIEWKSYPAGNLVYAAARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPM 609 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 + I+G +++ + ++ I S + L++++N+ILD S++EAG+ + Sbjct: 610 SGIMGLMDMLLDG----EATPAQRRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDRE 665 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 A + ++ E + A++K + + +D ++ + + +D + + Q++ NL+ NA+KFT Sbjct: 666 AFAPRTLIEEVCGRFEYMAEQKELRLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFT 725 Query: 384 AIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V V + T+ + +S+ D+G GI + ++ + F Q + G GLGL Sbjct: 726 QQ-GEVSVRLRADTTDKLLTLSVSDSGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGL 784 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I + ++ GG + S+L G +P Sbjct: 785 AICKGLVQALGGDIRVESELGAGSVFTVRIPMEIAPQTT 823 >gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] Length = 626 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 13/238 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + +F++++SHELRTPL ++ + E + + E ++ ++ +I Sbjct: 379 DRERRQFVSNVSHELRTPLTSMRSYIEALNDGAW--KDPEVAPSFLKVTQDETDRMIRMI 436 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN----------IEIFQKID 355 N++L LSR+++G +L ++L ++ + + ++ N I + Sbjct: 437 NDLLSLSRMDSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYTIKRDFT 496 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NA+K++ GG + + T +SI D G GI Sbjct: 497 KRDLWVEIDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNH-VILSITDQGLGIPRK 555 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + A A+ G GLGL I++ ++ H G+ + S +G LP Sbjct: 556 DLGHIFDRFFRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYISLP 613 >gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 602 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTPL+ + G+SE + + G + KE IH + Sbjct: 362 RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAG--TPDERKELAQVIHDESLRMGR 419 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVW 362 L+ ++LDL+++EAG ++ + + + + A+E+ I + ++ + + Sbjct: 420 LVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIE 479 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPT 419 DE + QV+ NLL NA + T V + + I ++D G GI ++P Sbjct: 480 GDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPY 539 Query: 420 VLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 V F + A A G GLGL I ++I+ H G+ ++S L +G LP R Sbjct: 540 VFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYR 597 >gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 767 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E +++AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + E K Sbjct: 530 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 585 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EYI I + + LL LIN+ILDLS+IE+G E + +L + E + +Q + N+ Sbjct: 586 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 645 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E+ S V D ++QV +N L+NAVK T G + + G I ++D Sbjct: 646 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIEREG-LRIYVEDT 703 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + V T F + QG GLGL I+++I+ GG+ SKL G Sbjct: 704 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 759 Query: 469 IAILPNTR 476 A LP Sbjct: 760 WAWLPLRP 767 >gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 657 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E +++AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + E K Sbjct: 420 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 475 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EYI I + + LL LIN+ILDLS+IE+G E + +L + E + +Q + N+ Sbjct: 476 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 535 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E+ S V D ++QV +N L+NAVK T G + + G I ++D Sbjct: 536 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIEREG-LRIYVEDT 593 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + V T F + QG GLGL I+++I+ GG+ SKL G Sbjct: 594 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 649 Query: 469 IAILPNTR 476 A LP Sbjct: 650 WAWLPLRP 657 >gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 638 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 7/244 (2%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +A + AKS FLA MSHE+RTP+N+ILG ++ + + +E Sbjct: 140 KNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED----REK 195 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H SG LL +IN+ILD SR+EA + L + V + +L+ RA EK++ + Sbjct: 196 LSVVHDSGAALLGIINDILDFSRLEADGVQFENLPFHLGNTVEGVVSLLRGRASEKDLTL 255 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDN 408 L V D +RQV++NL+ NA+KFT GG + + + + G ++ D Sbjct: 256 VLDGPAQLPGWVSGDGARLRQVLINLIGNAIKFTDQGG-IVLRLRRSDDGNGYEFAVIDT 314 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + ++ F Q +I G GLGL I + ++ GG+ + S G Sbjct: 315 GIGLDAAQAQSLFQPFHQADASISRRFGGSGLGLAICKKLINAQGGKIGVDSTKGLGSRF 374 Query: 469 IAIL 472 L Sbjct: 375 WFRL 378 >gi|301162819|emb|CBW22366.1| putative two-component histidine sensor kinase [Bacteroides fragilis 638R] Length = 639 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE ++ E + RAEE N KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLAS---GGS 451 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILDLSR+EA + L+ ++ + R+ + +++ Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 +E + + D + ++QV++NLL+NA KFT G + + Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI + + V F + QG GLGL I + + GG I Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626 Query: 462 LREGVEVIAILPN 474 +G + P Sbjct: 627 YEDGARFVVSHPL 639 >gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium] gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium] Length = 2112 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 21/268 (7%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + +D+ R+ AE AKS FLA+MSHE+RTP+NAI+GFS++ ++ + Sbjct: 1558 ERIEREQADKQRQIAEAATQAKSEFLANMSHEIRTPMNAIVGFSKLALESSL----DRKQ 1613 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 EY+ I + ++LL L++++LD S+IEAG+ L L + + E + + + +N Sbjct: 1614 HEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSETLTEVERLFRTEVRRRN 1673 Query: 348 IEIFQKID-------PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + + + P + D ++QV++NL+ NAVKFT GG + + + Sbjct: 1674 LTLEIEDRTGEHPGFPEDGVLTGDALRIQQVLVNLVGNAVKFTETGG-IVIGAEVIAANH 1732 Query: 401 ----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +S+ D G GI + ++ + SF Q + G GLGL I++ ++ GG+ Sbjct: 1733 GQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGLGLTISERLVDLMGGEI 1792 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPED 484 + S + EG L + IP++ Sbjct: 1793 HVTSTVGEGSCFQFTL-----IATIPDE 1815 >gi|257792718|ref|YP_003183324.1| histidine kinase [Eggerthella lenta DSM 2243] gi|317489005|ref|ZP_07947532.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325831168|ref|ZP_08164492.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|257476615|gb|ACV56935.1| histidine kinase [Eggerthella lenta DSM 2243] gi|316911872|gb|EFV33454.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325487089|gb|EGC89535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 908 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 172/424 (40%), Gaps = 32/424 (7%) Query: 60 ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 A + T + +++ + + + +++ + ++GQ+ L Sbjct: 305 AAVVTTTFEAVFAIIFACLVVVALLVFGAYRRRL-----------REQNVAMLGQLYEAL 353 Query: 120 CWTL-LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 ++ + + + I A +I + A A + P VAL + Sbjct: 354 SDSIDMAVNLYSPTDGKVTPIVAKAERIIGYRLDAFLQNE-RLAATIGLSPEGVALFDRI 412 Query: 179 IM----SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + S + +Y L + D+ A+ E+ S+ Sbjct: 413 RKDETKGFEQGEFSFRSKQTGKECWASYSVKRL--TFEDKPQLLVVMRDVTADKEIQLSM 470 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 D AE N AKS FL+ MSHE+RTP+N ILG ++ P + E E + I Sbjct: 471 KD-AMDVAEAANAAKSEFLSRMSHEIRTPMNVILGTLQLARSN---PDDREKVAETLKKI 526 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + HLL LIN++LD+S+IE G+ L+ L ++ ++++ +++ E Sbjct: 527 GDASDHLLGLINDVLDISKIENGKMTLASEPFRLSAVLSHVASAVRVQCEQRAQEFVVTT 586 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDN 408 P +V+ D + ++Q++LNLL+NAVK+T GG V G R ++ DN Sbjct: 587 PPCADAVFVGDARRIKQLLLNLLTNAVKYTPCGGCVRFETTVAKGAAMGYRQVKFTVSDN 646 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++E + F + EQG GLG+PI ++I+ G + S +G Sbjct: 647 GIGMSEEFKEHIFEPFSMEGRSR---EQGTGLGMPIVKNIVTMMAGDIAVESTKGQGTTF 703 Query: 469 IAIL 472 Sbjct: 704 TVTF 707 >gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 768 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 141/312 (45%), Gaps = 10/312 (3%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 ++++SL + + + Q +L +E E + E Sbjct: 246 LMNVSLVNGQEVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTE 305 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AKSRF+A+MSHE RTPLN I+GFS+++ + + + + I RSG+HLL+ Sbjct: 306 IANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDRRITSD---QQSNLNVILRSGEHLLS 362 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 L+NE++ LS+IEAG ++L + +L L+A K+I+ I P + V Sbjct: 363 LVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIHIAPDVPQYVR 422 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRV-----HVTVGWTSGRGQYISIKDNGPGIAEGEI 417 D K +RQ+++NLL NA+KFT G V + S + I+D GPGI + Sbjct: 423 TDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQDTGPGIPGHLL 482 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 P + F Q + G+GLGL I Q + G I S +G V + Sbjct: 483 PQLFEPFAQ-DPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTVSFYIQVESG 541 Query: 478 LNFIPEDNHEST 489 + E+T Sbjct: 542 EPVLEPAISETT 553 >gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 31758] gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia pseudotuberculosis IP 31758] Length = 930 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 529 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 9/225 (4%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN+I+G ++ + + ++ + R+ L+ +IN+ILDL Sbjct: 148 FLANMSHEIRTPLNSIIGITDTLAETPLDN----QQASFVEILQRANHQLMTIINDILDL 203 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQ 370 S++EAG EL +L ++ E +L RA+EK +++ IDP + + D +RQ Sbjct: 204 SKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVEEYFVGDADRLRQ 263 Query: 371 VILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 V++NLL+N++KFT G + + V + D G GI++ + + F Q Sbjct: 264 VLMNLLNNSLKFTN-NGEISLQVSVNRTVHKGNLLFCVTDTGIGISKQKFKDIFQPFTQA 322 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I ++I+ G S+ +G + Sbjct: 323 DTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQPGQGTSFFFTI 367 >gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1364 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++ + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ + S G E ++ + + P+ E Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SAPPQAQRE 881 >gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1438 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 102/433 (23%), Positives = 171/433 (39%), Gaps = 30/433 (6%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + + +G+ R + + L + L + +L + Sbjct: 700 DRFKMGESLVGQAARSRRTIAADGVPGDYISISSGLGPMTPGSLIVLPVVVDDQVLGVIE 759 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYIT 204 +++ + F + FL +V ++ I++ D L Sbjct: 760 LASFTAFTPIHRDFLEQLMEMVGVNVNTIVANARTDELLGESQRLTGELQSRSEELQVQQ 819 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257 L +SN ++ A +++E ++ R+ EE + KS FLA+MS Sbjct: 820 DELQRSNAELEEKAALLAAQNSDIEAKNLEIEQARQELEERAQQLSLASTYKSEFLANMS 879 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L ++++ L + EY G IH +G LL LIN+ILDLS++EAG Sbjct: 880 HELRTPLNSLLILAQLLAQNPTRNLTVKQV-EYAGIIHSAGSDLLQLINDILDLSKVEAG 938 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + +L+ +L ++ + +K++ P + + D+ +RQV+ NL+ Sbjct: 939 KMDLNPERFTLRQLLDYVEATFRPMTTQKSLTFTISTAPGVPVDLLTDDSRLRQVLRNLI 998 Query: 377 SNAVKFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFG 425 SNAVKFT G V + + + +KD G GIAE ++ T+ +F Sbjct: 999 SNAVKFTER-GSVELRIEPAADHELPDSVHRGGGVVAFRVKDTGIGIAEQQLETIFGAFQ 1057 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV---LNFIP 482 Q G GLGL I++ I GG RS G LP R P Sbjct: 1058 QADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFTLYLPVARADFQDQAAP 1117 Query: 483 EDNHESTQYKCYA 495 + A Sbjct: 1118 SPEVSAADSPAAA 1130 >gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis PB1/+] gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 924 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 810 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 11/268 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 ++ I+ D+ E + R +AEE + KS FLA+MSHE+RTPLN Sbjct: 549 RDYRPEEGIIEMLCINYDITTLKET-EQKLIIARDKAEELDRLKSAFLANMSHEIRTPLN 607 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+GFS ++ + E ++YI + + LL LI++ILDL++IEAG + + Sbjct: 608 AIVGFSSLLAET----ESKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGTFNFVYAD 663 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + ++ E I ++ + NI++ + ++ D+ QVI N ++NA+KFT Sbjct: 664 LDVNEVCSEIIKSTGMKVKG-NIKLLFEKQIPECHIYTDKNRFMQVITNFINNALKFTHE 722 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + S + ++D G GI +I +V F + + QG GLGL I Sbjct: 723 -GTIALGYEQISSQKIRFYVRDTGVGIPASKINSVFERFVKL----NNFVQGTGLGLSIC 777 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 +SI+ G+ + S G LP Sbjct: 778 KSIITQMEGEIGVDSTEGAGSCFWFTLP 805 >gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] Length = 1228 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 5/268 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + + +++ + EL ++ E A N AKS FLA MSHE+RTP+NAI+G Sbjct: 808 ALLGVARDVSQRVAVEKELRRIQTELQEACATANRANEAKSSFLARMSHEIRTPMNAIIG 867 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + + + + I S HLL L+N+ILD+S+IEAG+ ELSE + +L Sbjct: 868 MANIARKKLHARSPTDELLNCANQIEVSSHHLLGLLNDILDISKIEAGKIELSEDSFALS 927 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +V +++ R EKNI ++ + + + AD +RQV++NLL NA KFT G Sbjct: 928 KLVNSVESIIRPRCMEKNIAFNVAVEGIATAHLKADSLRLRQVLINLLGNAAKFTPELGE 987 Query: 389 VHVTVGWTS--GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + V + IS ++DNG GIAE + T+ F QGS I A G GLGL I Sbjct: 988 ILFRVRQEDRRRGERLISFLVQDNGVGIAEETLKTLFEPFEQGSTHIARAYGGTGLGLSI 1047 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++SI+ + GG + S +G +L Sbjct: 1048 SKSIIKHMGGDIAVTSTPGKGSAFSFLL 1075 >gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 967 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + ++ AE N AKS FLA+MSHE+RTP+N I+G + L++ + Sbjct: 576 MTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHLARLKS----AD 631 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T +Y+ +S HLL ++N++LDLS++EAG+ L+ + +L + L + A Sbjct: 632 PTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVEPLLVAAG 691 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 EK + + + V D +RQV+ NL+ NA+KFT GR+ V V +G Sbjct: 692 EKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGK-GRIEVRVALAAGAAEPG 750 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 R +++D G GI + + SF Q + + G GLGL I++ ++ GG+ + Sbjct: 751 TRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAHALYGGTGLGLTISKRLVELMGGEII 810 Query: 458 IRSKLREGVEVIAIL 472 S+ +G + Sbjct: 811 AESREGQGSTFSFSI 825 >gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1578 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 144/261 (55%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + + ++ A NL+KS FLA+MSHELRTPLNAILGF++++ + Sbjct: 1101 ISQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGR---DTSLS 1157 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++E + I+RSG+HLL LI++ILDLS+IE G+ L + L ++ ML +A+ Sbjct: 1158 AYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAE 1217 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K I++ + D +L + D K +RQ+++NLL+NA+KFT G V + V + Sbjct: 1218 SKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQ-GTVTLRVNLSKIDQKAV 1276 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA E+ + F Q A K QG GLGL I+Q ++ GG+ + Sbjct: 1277 IVKFIVEDTGVGIAADELDNLFQLFVQAE-AGKKINQGSGLGLAISQKLVQLMGGKIEVN 1335 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S L +G +P L+ Sbjct: 1336 SILNQGSIFSFEIPVELSLSS 1356 >gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 613 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 AE E + KS ++++SHELRTPL++I GF+E++ + E+ +E Y+ IH + Sbjct: 378 AETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDL----KESRRELYLKTIHDEAK 433 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N+ LDL ++E+G+ + L +V + + Q + I + Sbjct: 434 RLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRHELFIDADTEQDFI 493 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + AD +GMRQ++ NLLSNA+K++ GG + V++ + ++D+G GI +P Sbjct: 494 -IDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERV-DEEVVMKVRDHGMGIPSASLPH 551 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F + + + G GLGL I + I H GQ + S EG I LP ++ Sbjct: 552 LFGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSK 608 >gi|188582812|ref|YP_001926257.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346310|gb|ACB81722.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1120 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 167/352 (47%), Gaps = 15/352 (4%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV--ALSTQAIMSMHVLDISLAGML 193 + I + ML + V+V + L +L + Sbjct: 536 ARVLPARIAAWIGAPLGRYLALMLTLITVIGLIFVIVHAGAAAAHPEHGETLRAALTSLF 595 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEK-------DDLIAELEVAKSLSDETRKRAEEEN 246 + + + + Q E + IA +V + + ++ AE N Sbjct: 596 FILIVILGVVAWLFVLAQESRRVAQEETARQTALYEAEIAAHKVTDAKLQQAKETAEAAN 655 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 LAKSR++ +SHELRTPLNA+LG+++++E P E + I I RS QHL LI+ Sbjct: 656 LAKSRYVVGISHELRTPLNAVLGYAQLLE---GDPSIPEPRRNGIRVIRRSAQHLSGLID 712 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DE 365 +LD+SR+EAGR + + I L D + + + M++L+A+ ++ L +V A DE Sbjct: 713 GLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLKFRFTRPEILPAVVATDE 772 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 K +RQ++LNLLSNA+KFTA G V + + + G+ +I+D G GI E ++ + F Sbjct: 773 KRLRQILLNLLSNAIKFTAE-GEVALEMTYR-GQVAVFTIRDTGLGIPEADLGRIFEPFE 830 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +GS+ A G GLGL IA + GG+ + S++ +G L V Sbjct: 831 RGSMPAARAAPGTGLGLTIAGLLAQVMGGEITVESRVGQGTSFRVRLMLASV 882 >gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] Length = 646 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 13/240 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + E + + I SG+ LL +IN++ Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETDL----TEEQRLFASTIKTSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEA + L L + E + ++Q+ A++K +E+ D L D Sbjct: 272 LDYSKIEAEKLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRFVGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLT 422 +RQ++ NLL NAVKFT G V V V +++++D G GI +I + Sbjct: 332 IRQIMTNLLGNAVKFT-ESGHVLVRVTGVHPDAEGRASVHVTVEDTGIGIPPDKIDHIFG 390 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNF 480 F Q +G GLGL I+Q ++ GG+ + S+ +G LP ++ Sbjct: 391 EFNQVDDERNRKFEGTGLGLAISQKLIRLMGGKIWVDSEPGKGSTFGFSVSLPVAEIVEA 450 >gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 1008 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 138/266 (51%), Gaps = 24/266 (9%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG-------PLNNETYK----- 288 AE E + K+ F++++SHELRTPL ++LGF+++I+ + + + + Sbjct: 510 AEKEVDQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVFPIVVTEDKKVQRAVKQV 569 Query: 289 -EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + + I GQ L +LIN++LD++++EAG+ + + + D++ I + K Sbjct: 570 GDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDDLIDRAIAATFALFENKG 629 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIK 406 +E + I+ +L + D + QV++NLLSN++KFT G VT G ISI Sbjct: 630 LEPIKDIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG---FVTCQAKKIGDKIKISII 686 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+E + P V F Q + +G GLGLPI + I+ +HGG+ + S+L +G Sbjct: 687 DTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQIIEHHGGKIWVESELGKGS 746 Query: 467 EVIAILPNTRVLNFIPEDNHESTQYK 492 ILP P + ES+ K Sbjct: 747 NFSFILPLK------PAEEAESSLKK 766 >gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] Length = 712 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAE--- 377 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +++ + Y+ + + + LLNLI++ILD+S+IEAG EL+ + + L + RE I Sbjct: 378 --ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTC 435 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + E+ + + V AD+ + QV+ N ++NA+KFT G V ++ + Sbjct: 436 SHKKHEEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTK-GSVTLSYRLENDT 494 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GI + + F + S QG GLGL I QS++ GG+ + Sbjct: 495 QVRFCVTDTGKGIPAEQQHEIFNRFVKLD----SFSQGAGLGLSICQSLVERMGGEIGVE 550 Query: 460 SKLREGVEVIAILP 473 S+ EG P Sbjct: 551 SREGEGSCFWFTHP 564 >gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 813 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 129/279 (46%), Gaps = 15/279 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + K ++ E + EL ++A+ AKS FLA+MSHE+RT Sbjct: 252 LKMARDKLEDRVRQRTVELERANVELTSKSQRLVTAMEKADAATRAKSSFLANMSHEIRT 311 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLNAILG SE+ + + + Y+ + +G LL++IN+ILD S+IEA R L Sbjct: 312 PLNAILGMSEL----ALSIPDKDRKDRYLHRVMEAGNSLLSVINDILDFSKIEAARLTLE 367 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVK 381 L + + + + A+EK +E+ + ++ D +RQ+++NL+ NA+K Sbjct: 368 NIDFDLRRTIEGTLDLHLIAAEEKGLELRAGVAEDVPPALVGDPSRLRQILINLIGNAIK 427 Query: 382 FTAIGGRVHVTVGWTSGRG---------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 FT GG V V+V + ++ D G GI E + + SF Q +I Sbjct: 428 FTETGG-VTVSVRPAAPADDLKPGDPITLVFAVTDTGVGIPEHKQRDIFQSFLQADDSIT 486 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I Q ++ GG+ + S+ G Sbjct: 487 RKYGGTGLGLAICQLLVELMGGELTLESREGMGSTFTFT 525 >gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas sp. SM9913] gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas sp. SM9913] Length = 918 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 27/387 (6%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFLSFFPVVVALST 176 W +++L + + + LL ++++ L + + + + +++ Sbjct: 410 TGWQVISLYNRKYLSLVVVAAWLPTMLLGLFSIALVVLFIYKFTHLLVKPIIELTHLINS 469 Query: 177 QAIMSMHVLDI-SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-- 233 + HV + S + F + L S + + + +DL +L Sbjct: 470 FSKTKKHVFNTDSSWYEVLQLQQQFEMLGNALQHSIKSLQASNVKNEDLNKQLSQFNQQL 529 Query: 234 ---------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + K A E N+AKS+FLA+MSHELRTP+N ILG EV+ + L+N Sbjct: 530 ADKVAEQTTELTQAVKLANEANIAKSQFLANMSHELRTPMNGILGMGEVLLRDQ--SLSN 587 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE + +S ++LL+++N+ILD S+IEA EL+ + + + Sbjct: 588 E-QKELLLTQQKSAKNLLDILNDILDFSKIEANAMELNSRPTQVAPFIENIRSLFTPIVS 646 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E +L + DE + QVI+NLLSNA KFT G V ++ + + + Sbjct: 647 TKEVEFSIIQTTNLPLYISVDELRLNQVIINLLSNAYKFTEQ-GFVRLSFDY-NDNKLQV 704 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S++D+G GIA+ + + + F Q + + G GLGL I+Q ++ G+ + S+ Sbjct: 705 SVEDSGIGIAKAQQSLLFSEFTQADVGVARKYGGTGLGLAISQKLIKMMDGEIHLHSEEG 764 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G + PE ++ Sbjct: 765 KGSTFTFSI-------SAPESAEAPSK 784 >gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 709 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 102/270 (37%), Positives = 152/270 (56%), Gaps = 2/270 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + + EL +A + ++RAE N AKS FLA MSHELRTPL Sbjct: 442 RRLKATINDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEFLAKMSHELRTPL 501 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE+I+ ET G L + Y EY+ DIH SG+HLLNLIN IL++S+IE+ +++ Sbjct: 502 NAILGFSEIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMSKIESEHIAINKK 561 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +LI I+ E + + AQ+KNI I + I P L ADE+ +++++ + SN++KFT Sbjct: 562 NTNLIPIINESLQSIASSAQKKNIMIEKNISPEL-FCNADERIIKKILTPIFSNSIKFTN 620 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG++ V + I++ D G GI + + V F Q G GLGL I Sbjct: 621 NGGKMIVQTSRVND-SVIITVADTGIGIPKSALKKVGKPFEQLHNQYDQNTGGSGLGLAI 679 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ HGG+ I S+ EG + +P Sbjct: 680 SDALTNLHGGKLEILSQEGEGTVIKIGMPK 709 >gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 146/269 (54%), Gaps = 16/269 (5%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 ++ + ++A LE ++ + ++AE N AKS+FLA MSHELRTPLNAILGF+++ Sbjct: 499 EVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILGFTQI 558 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + ++ +E + I RSG+HLL+LIN++L++S+IEAG+ L+E+ L ++ Sbjct: 559 LTRNS---SLSQEDQENLDIISRSGEHLLSLINDVLEMSKIEAGKPTLNETYFDLYRLIY 615 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 M L+A +K I + + + V+ DE ++Q+++NL+ NA+KFT + G V + Sbjct: 616 SIQEMFALKAADKGINLITEFGVEVNKYVFGDEGKLKQILINLIGNAIKFTVV-GHVAIR 674 Query: 393 VG--------WTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 V + I ++D G GIA + + +F Q S + QG GLGL Sbjct: 675 VSCPPNYAPLAVTNGKVLIELEVEDTGAGIALEDQELIFEAFLQ-SKGGRQFMQGTGLGL 733 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ GG ++S L EG Sbjct: 734 AISRQFARLMGGDITVKSILGEGTTFTCR 762 >gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 1104 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 5/271 (1%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 K + L E+ L + +T + E + K F++++SHELRTP+ +I Sbjct: 831 RKIAIATLLDITERKQSEETLRIYSEKLSKTNEELRELDKMKDEFISNLSHELRTPITSI 890 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 GFSE+I E +G L NE KE + I +S L LI +L +++++ + + + Sbjct: 891 KGFSELIYNEKLGTL-NEKQKEGMDSIVKSCDRLRWLIESLLYVNKLQTEKIQYKFEPVD 949 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + ++ + L L+ +EK I I + +D +L V D+ +RQV+++L+ NA KFT+ GG Sbjct: 950 VETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNGDKDYLRQVLVHLMDNARKFTSSGG 1009 Query: 388 RVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 ++ + + +I +KDNG GI + IP + F Q ++ +G GLG+ Sbjct: 1010 KIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPDIFKLFYQIDGSMTRKYEGTGLGMY 1069 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + I+ H G + S+ G +V LP Sbjct: 1070 LCNKIIETHNGYIWVDSEENAGTDVHVKLPA 1100 >gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] Length = 780 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 6/302 (1%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ + D SL +L T + V L + A+L Sbjct: 411 MAGWRAVQGRKRDGSLFPVLVTLSATLI----DGQPMVVAALKDMTVIEQQKADLRALAD 466 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E K A+ N AK+RFLA++SHELRTPLNAI+GFSE++ +T ++ E +EY D Sbjct: 467 EVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYAAD 526 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + ++G HLL LI+++LDL+RIEA R EL + + + ML ++K IE+ Sbjct: 527 VAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELEVA 586 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPG 411 + P L V AD + ++Q++ NLL NA KFT GGRV VTVG +++D G G Sbjct: 587 VAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGGRVTVTVGLDRAVPGQVRFTVEDTGCG 646 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + ++P + F Q +++ G+GLGL I++ ++ GG I S+L V Sbjct: 647 VPADKLPLLGQPFVQVGDKRRASAPGLGLGLAISRGLVERMGGMLRIESELGRWTRVSFG 706 Query: 472 LP 473 LP Sbjct: 707 LP 708 >gi|110596751|ref|ZP_01385041.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341438|gb|EAT59898.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 672 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 14/254 (5%) Query: 228 LEVAKSLSDET----RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 E + + E+ R AE N AKS FLA+MSHE+RTPL+A++G +E++ + Sbjct: 260 KEQIQRILIESLKKSRVEAEIANRAKSEFLANMSHEIRTPLHAVVGMTELLLDTPL---- 315 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 N T + Y I S + L LIN+ILD ++IE+G+ + +S +L + E +L A Sbjct: 316 NSTQRHYTDTIQASTKQLHQLINDILDFTKIESGQLDKVKSPFNLRALFTELSSILTGNA 375 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 ++ +++ I S++ + ++Q ++NL+ NA+KFT GG + V V S Sbjct: 376 EKAGLQLSFIIPESVAGDLIGYPIYLKQALINLIQNAIKFTYKGG-IVVQVATESETPGE 434 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 IS+KD G GI + + V F Q + G GLGL I+ ++ GG+ + Sbjct: 435 ITLRISVKDTGIGIPDEKKELVFQRFTQLDSSATRKAGGAGLGLAISTQLVEFMGGKLNL 494 Query: 459 RSKLREGVEVIAIL 472 S+ EG E ++ Sbjct: 495 NSRKNEGSEFWFVI 508 >gi|315180554|gb|ADT87468.1| sensor histidine kinase [Vibrio furnissii NCTC 11218] Length = 796 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 9/258 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 311 QDEIRYLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS 370 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + P ++ + ++ SG+H++ L+NEILD S+IE G EL S+ L I+ Sbjct: 371 DLKP----RQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTS 426 Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + EK ++ ++D+ +RQ++ NLL+NAVKFT G V V + Sbjct: 427 VYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYR-GLVEVILEEE 485 Query: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + Q I ++D G GI + + F Q + G GLGL I + I Sbjct: 486 TVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMR 545 Query: 454 GQFLIRSKLREGVEVIAI 471 G + S++ G Sbjct: 546 GSVNVVSEVGIGTSFTIR 563 >gi|322418244|ref|YP_004197467.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124631|gb|ADW12191.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18] Length = 732 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 16/322 (4%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS------CQAEKD 222 V+ L+T + + + L+ +S ++ L + + + Q Sbjct: 129 LVLHVLATNSRIRGMFAGVMQGSHLSVEVSTLNALSGILINTAYAVENSELYDMLQEHMQ 188 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +L +++ + + +AE AKS FLA+MSHE+RTP+N ++G + ++ + Sbjct: 189 NLELKVQQRTTELEHALVQAEAATAAKSVFLANMSHEIRTPMNGVIGLARLLMETPL--- 245 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ Y+ + + LL +INEILD+S++EAG L + L + + LR Sbjct: 246 -DKVQSNYLESLSDCAESLLTIINEILDISKVEAGMITLEKIVFDLRRFLDRSLQPFMLR 304 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397 QEK +++ + P L + D + QV+ NL+ NA+KFT G + V+ Sbjct: 305 GQEKGVQVLLEASPDLPQLLVGDPVRIGQVLGNLIGNALKFTQR-GTITVSCRLIEMKEG 363 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +++ D G GIA + + F Q + G GLGL I++S++ GG Sbjct: 364 DVLLRLAVADTGIGIAPQALDVIFEKFSQADSSTTRLYGGTGLGLSISRSLVELMGGALG 423 Query: 458 IRSKLREGVEVIAILPNTRVLN 479 + S+L EG L L Sbjct: 424 VESRLGEGSVFSFTLQARLPLP 445 >gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 479 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 8/243 (3%) Query: 239 RKRAEEENLAKSR--FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE NL K R F+A++SHE+RTPL+ + G+SE + + E E I+ Sbjct: 234 RDVTEEVNLEKMRRDFVANVSHEIRTPLSMMQGYSEALLDGM--ASSPEESAELAQVIYD 291 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+ ++LDL+R+EAG ++ I ++ Q+RA++ +E+ +++ Sbjct: 292 ESLRMGRLVRDLLDLARMEAGHTDMVMRKIDFRELAERVDRKFQVRAKDNGVELVLELED 351 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIA 413 + ADE + QV+ NLL NA + T GG+V V +G ++++ D G GI Sbjct: 352 GELQLQADEDRLEQVLTNLLDNAFRHTPEGGKVTVKAHMETGEMGKQLHVAVSDTGVGIP 411 Query: 414 EGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F + A E G GLGL I ++I+A H G S++ +G +L Sbjct: 412 SEDLRYIFDRFYKADKARVRGENGGTGLGLSIVKNIIAAHHGSIWADSEIGKGTVFHFLL 471 Query: 473 PNT 475 P Sbjct: 472 PVE 474 >gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] Length = 1031 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 11/260 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D + E E + AE+ + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 638 RVDDVTEREEMIKELQIAKMHAEQSDKLKSAFLANMSHEIRTPLNAIVGFSGLMM----- 692 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++E ++Y+ I+ + + LL LI++ILDLS++EAG EL L D ++ Sbjct: 693 YASDEEKEDYMQIINNNNEMLLKLISDILDLSKLEAGSVELKYEEFDLTDYFNSMFASMK 752 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 RA I+I V D + Q+I N ++NA+K+T G + + + Sbjct: 753 QRATNPKIQIVAVNPYQHCLVTLDRNRVAQIITNYVTNAIKYTTE-GTIEMGYEYREEG- 810 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y +KD+G GI + + V F + QG GLGL I ++I GG S Sbjct: 811 IYFYVKDSGIGIPDEKKNKVFHRFEKLDE----FAQGTGLGLSICKAIAEAMGGNVGFES 866 Query: 461 KLREGVEVIAILPNTRVLNF 480 + +G A+LP + Sbjct: 867 EYGKGSLFWALLPCEVEIPS 886 >gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a F6854] gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988] gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165] gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S] gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161] gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818] gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900] gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578] gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923] gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a F6854] gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165] gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900] gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578] gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923] gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818] Length = 596 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398 A+E +E+ +++ D M QV++NL+ NA++ T G+V + Sbjct: 457 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 R I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 577 SVESELGKGSDFIITLPLYK 596 >gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 997 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 9/280 (3%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S+++I S + + + ++ AE + KS FLA+MSHELRTPLN I G Sbjct: 581 SDIRITSLFMDAVWRMVARRRDAAALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQG 640 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++ ++ P +EY+ S + L L+ +ILDLSR+E+G+ L L Sbjct: 641 MTQLLAATSLTP----EQREYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLA 696 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG- 387 D++ E I+ ++ P + + + DE +RQ++ NL+ NAVKFT GG Sbjct: 697 DLLSAVAAAFMPACLEAGIDWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFTKTGGV 756 Query: 388 RVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 R+ V G + ++ D G GI E+ + +F Q + QG GLGL I Sbjct: 757 RLEVWAGPVDASGCGSLFFAVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAI 816 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + ++ G + S++ G + LP R ++ Sbjct: 817 VRRLLDLMQGTISVESEVGRGTRCVCALPLIRPQPQHQKE 856 >gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC 27755] gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC 27755] Length = 687 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 16/269 (5%) Query: 230 VAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + E +K AE E + AK+RFL +MSH++RTP+NAI+GFS+++ N E Sbjct: 288 RENQYAVELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL---DNEEK 344 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +EY+G I SG L+ +I+++L+++RIE+ L A +L ++ +L+ Q K Sbjct: 345 VREYLGKIKSSGNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMK 404 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYI 403 I + + D+ ++++ LN++SNA+K+T G +HVT+ T + +Y+ Sbjct: 405 GIHCSIDANVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYV 464 Query: 404 SI-KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + +D G G+A +P + F + A ++ G GLGL I +S + G+ + S+ Sbjct: 465 FVCEDTGIGMAPEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEP 524 Query: 463 REGVEVIAILPNTRVLN------FIPEDN 485 +G + +P +PE Sbjct: 525 GKGTKFTVEVPLELASEEDVCKKELPEQT 553 >gi|153811915|ref|ZP_01964583.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174] gi|149832049|gb|EDM87134.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174] Length = 865 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L K + + EK I ++ E AE N AK+ FL++MSH++RTP+N Sbjct: 317 KLEKVLLASMDVTQEKKAEIE----SRQALKEAYWSAENANRAKTEFLSNMSHDIRTPMN 372 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + + E + I +S +HLL LINE+LD++RIE+G+ L++ Sbjct: 373 AIVGLTAIAGANI---ESQDRVIECLSKITKSSRHLLGLINEVLDMARIESGKMTLAQED 429 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L D+V I + + E +I+ V D ++QV +NL+SNA+K+T Sbjct: 430 FNLPDLVDNLITLTKPVLDEHKHNFDVRINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTL 489 Query: 385 IGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG + ++ +I+DNG G++ + F + + QG G Sbjct: 490 DGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTKVQGTG 549 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 LG+ I+++I+ G + S L +G ++ + Sbjct: 550 LGMAISRNIVNLMNGNIKVDSTLHKGTKITVTI 582 >gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 576 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 LIDGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569 >gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1336 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 10/268 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E ++ AE + AKS FLA+MSHE+RTP+NAI+G + + + ++ Sbjct: 678 HDVTERRHLTRQLQRAKEEAEAASRAKSDFLANMSHEIRTPMNAIIGMTNLTLMTSLTR- 736 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E++G + + + L+ L+ +ILDLS+IEA + L L D++ + L +R Sbjct: 737 ---EQTEFLGTVKSAAESLMQLLGDILDLSKIEARQLALENVEFDLADLLEATLRDLAVR 793 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A K +E+ ++ P + D +RQ+++NL+ NA+KFT G+V V + Sbjct: 794 AHGKGLELIGRMAPGAPGRLRGDPLRLRQILVNLVGNAIKFT-DHGQVLVEARLEAMADN 852 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 S+ D G GI I V F Q + G GLG I++ + GG+ Sbjct: 853 KLEMRFSVVDTGVGIEPENIGRVFDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIW 912 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDN 485 + S G + PE + Sbjct: 913 VESTPGRGSAFHFTIAAGHSSQDQPEPS 940 >gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 664 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 88/272 (32%), Positives = 146/272 (53%), Gaps = 14/272 (5%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPL 264 +++++ + + ++L + + + DE R AE NLAKSRFL+SMSHE+RTP+ Sbjct: 240 HRAHLET-TVRERTEELEHKNDSLNTALDELRNATLVAERANLAKSRFLSSMSHEIRTPM 298 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA+LG +E++ + P Y+ I +G+ LL ++++I+DLSRIE G L E+ Sbjct: 299 NAVLGMAEILGETELTP----DQTRYVQIIRAAGESLLAILSDIIDLSRIETGSLRLDET 354 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 +L + V + +++ RA +K++E+ + P + + D K + QV+++LL NAVKFT Sbjct: 355 RFTLSETVDKAFAIIEPRAGQKSLELVCTLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFT 414 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 GG V ++V GR S+ D GPGI + + SF Q + + G G Sbjct: 415 -EGGTVRLSVSRAPGRDGGVAVQFSVSDTGPGIPADRLGAIFDSFTQANNSTTREHGGAG 473 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 LGL I++ I+ GG+ S + G Sbjct: 474 LGLTISKRIVHMMGGRIWAESSVGLGSTFHFT 505 >gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1331 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R ++V ++ G L E L I +L + + Sbjct: 600 RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 659 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208 ++++ F FL + ++ I++ D LA + + + Sbjct: 660 ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 719 Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 + + + L A+ E ++ R+ E + KS FLA+MSH Sbjct: 720 ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 780 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S ++L ++ + +K +E P + + D+ +RQV+ NLLS Sbjct: 839 MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 898 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V + V +KD G GI E + ++ +F Q Sbjct: 899 NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 957 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG + S G LP R Sbjct: 958 ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1007 >gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] Length = 631 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 101/480 (21%), Positives = 176/480 (36%), Gaps = 58/480 (12%) Query: 46 FRVSPILPLFVLLVANIG--TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 P+ L+V G W I W L L + + Sbjct: 142 LSHLPVAIACALIVCLAGKAPWSLYPEIAGTWFLSDSFGILIFAPLIIATQHGYREFIHH 201 Query: 104 YV--WRIWLLVGQIAIG------------------LCWTLLTLVEPGTWTPEYLTIYKSA 143 W + + + +G L WT E G + + A Sbjct: 202 LKKYWLAAISIATLTLGISHLVINGYHGEYLLAPLLVWTTFQFKEVGATLLMVMIVLMVA 261 Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-GMLATALSFFTY 202 + L ++ LS F + ++ + + A L Sbjct: 262 ISTVQ-GYGTFVGESLRNSLLLSQFFIACIGLMTLMLIAVLNEKKQAKADLKAMNQTLAS 320 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVA---KSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + ++++L+ + A + + ++ AE KS FLA+MSHE Sbjct: 321 QNQRLEELATQKELAHQQRENLLVKYNQALKRQLNLIQAKQAAEMAAQEKSEFLANMSHE 380 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLN ++G ++++ + + E + I SG+ LLN+IN+ILD RIE+G Sbjct: 381 IRTPLNGVIGVAQLLLTMDL----KDDQAELVAIIEDSGKTLLNIINDILDFLRIESGSL 436 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSN 378 L S ++++ +L+++A +K+I++ + S+ ++ D+ +RQ++ NLL N Sbjct: 437 RLEARCFSFQELLKSVFTLLKVQADQKDIDLQYCVADSIPNILMGDDLRLRQILFNLLGN 496 Query: 379 AVKFTAIGGRVHVTVGWT-------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 A+KFTA G V T I D G GI ++ + F Q +I Sbjct: 497 ALKFTATGSVQLVITSHTVPSLSDPPTEELSFQILDTGIGIQVAQLNQLFQPFIQADASI 556 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-------------KLRE------GVEVIAIL 472 G GLGL IA+ ++ GG+ + S E G Sbjct: 557 SRRYGGSGLGLAIAKRLVNLMGGKIWVESNGELAGDPPPDWFTPGELDPQSYGASFYFTF 616 >gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913] gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 940 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 143/297 (48%), Gaps = 9/297 (3%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDD---LIAELEVAKSLSDETRKRAEEENLAKSRF 252 + + + + + + EK L ++E + E N KS+F Sbjct: 422 LTFLLVIVAILILITVIAVYKRRTEKQAKLKLSEQVEQRTKELQSVAQELREANEVKSQF 481 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA++SHE+RTPL AIL ++ G E ++ + I R +HL +LIN++LDLS Sbjct: 482 LANISHEIRTPLTAILAQTD---DLISGQYKAEQLQDELRVIQRQSEHLRSLINDVLDLS 538 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQV 371 +IEA R EL+ S ++ ++ + M + + K + + + D ++Q+ Sbjct: 539 KIEANRLELNISCFDMVRLINDVHAMFSPQTKAKGLSLILESQLGDTYFTRLDLTRVKQI 598 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 ++NL +NA+KFT G V + V T +G I+D G G++ ++ + F Q +I Sbjct: 599 LINLCANAIKFTHK-GHVTIAVSKT-DQGLLFCIQDTGIGMSSSQLKLIFECFSQADNSI 656 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G GLGL ++Q + A GG ++S+ ++G E LP +V + D+ ++ Sbjct: 657 SRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSEFSFYLPCIQVEEQVCHDDMQA 713 >gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] Length = 960 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 81/292 (27%), Positives = 137/292 (46%), Gaps = 13/292 (4%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + F +V + D AE + L + A+ N AKS FL+ MSH++ Sbjct: 402 IIYVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKAANQAKSDFLSRMSHDI 461 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+NAI+G S + + + + ++ I S ++LL+LIN+ILD+S+IE G+ E Sbjct: 462 RTPMNAIVGMSTI---GQLKLDDRRSVQDCFCKIDASSRYLLSLINDILDMSKIETGKME 518 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379 L+ +++ E ++ +A+E+ IE L + D ++Q+++NLLSNA Sbjct: 519 LAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGDPLRLKQILMNLLSNA 578 Query: 380 VKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT GGR+ + + +KD G G++ + F Q + Sbjct: 579 LKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRLFMPFEQEAPETARNN 638 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I +++ GG + S+ +G LP + ED+ E Sbjct: 639 IGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPFK-----LAEDDQE 685 >gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 468 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 4/254 (1%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 +A++ + A+E + K FLA++SHELRTPL+ I G+SE + E Sbjct: 219 EIGRLAQAFNQMADAIAKE-DERKREFLANVSHELRTPLSYIKGYSEALLSGL--ARTKE 275 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + ++ IHR + + L+ ++LDL+++E L + ++ ++ + + M + + Sbjct: 276 EEQSHLRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIEDVMDMYRPIITQ 335 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 K + + +D L V D + QV+ NLL NA+++T GG V V + S + I Sbjct: 336 KRLTLTCDLDYELI-VDGDADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRFSDTEGELVI 394 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI + ++P + F + A E G GLGL I + I+A HGG S L +G Sbjct: 395 RDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHGGAIQFDSDLGQG 454 Query: 466 VEVIAILPNTRVLN 479 V LP + Sbjct: 455 TTVSVRLPLVQEEE 468 >gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 790 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 6/290 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + V+++S LE + + +E + K+ F +++SHELRTPLN IL Sbjct: 488 RMAVQVVSRDISDRKRAEILEKHMAQKQQLIHEMQECDRLKTEFFSNISHELRTPLNVIL 547 Query: 269 GFSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 G +++ + +++G + ++ LL L+N ++D+++I++G E+ Sbjct: 548 GSLQLMNLYTNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNNLIDMTKIDSGFCEMQLQN 607 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +++ IV E + + + + I + + + D + ++ILNLLSN+VKFT Sbjct: 608 HNIVSIVEEITLSVAAFIENRQITLLFDTEVEERMIACDPDKIERIILNLLSNSVKFTNY 667 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG++ V + G ISIKD G GI ++ + F Q + +G G+GL +A Sbjct: 668 GGQITVYIEEIEGN-VVISIKDTGIGIETEKLDMIFQRFRQADDLLTRRNEGSGIGLSLA 726 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE-STQYKCY 494 +S++ GG + S+ G E P RV+ + + E + + K Y Sbjct: 727 KSLIELQGGTISVTSEYGRGSEFTVTFPI-RVVETMKGEVQEINNKQKSY 775 >gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 421 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 3/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E K+ F++ +SHELRTPL AI G E++ + E ++ + + + LL Sbjct: 192 EVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREA-EQMLKIAVSNSERLLR 250 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362 L+N IL+L +++G+ L+ + +V++ + +Q AQ+K +EI D S + Sbjct: 251 LVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDVHNSKIL 310 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ + QV+ NLLSN+VKF+ G +V + + I++KD G GI ++ T+ Sbjct: 311 ADEETIIQVLTNLLSNSVKFSHAGTKVEIYTKM-GDKEIIIAVKDYGKGIPADKLKTIFE 369 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ G GLGL I ++I+ H G+ I S L G LP Sbjct: 370 RFEQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420 >gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 517 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 122/255 (47%), Gaps = 8/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R AE N KS FLA+ SHE+RTPLN ILG +E + Sbjct: 111 ITAIRANEQRLRLARSEAEAANKTKSAFLANTSHEIRTPLNGILGLTE----HVLKLDLP 166 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ IH +G LL L+N+ILDLS+IEAG +EL+ +L + V + + A+ Sbjct: 167 TEARQHLNTIHDAGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWSGPAK 226 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--G 400 +K + + I P + V AD + Q + NL+SNA+KFT G + V Sbjct: 227 QKGLSLDVVIGPGVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKAGQSV 286 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D GPGI++ + F Q + G GLGL I Q +M GG + S Sbjct: 287 VTVAVSDTGPGISDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSVDLES 346 Query: 461 KLREGVEVIAILPNT 475 K+ G LP Sbjct: 347 KVGVGTTFRVRLPVK 361 >gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] Length = 1137 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 166/386 (43%), Gaps = 33/386 (8%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFM---------LPYAVFLSFFPVVVALSTQAIM 180 G TP L + +AL++ + F L A V AL + Sbjct: 311 GQATPAELVMMPIVLNGVALAVVEMGWFRAVAPHEVDFLVRAGEQLAQAVRGALDRSRLE 370 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---- 236 S+ A L L + + + Q AELE + + + Sbjct: 371 SLLDETQRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELEHSNAQLEAQTE 430 Query: 237 ----------------ETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + R + + KS FLA+MSHELRTPLN+ L ++++ Sbjct: 431 QLQYQKQRLLTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQ 490 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L E + Y IH +G LLNLIN+ILDL++IEAG+ + +++ +V + L Sbjct: 491 QNLTAEQVR-YAQTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVAKVVAGVMEPL 549 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + +AQ+K ++ ++P + + + +D + + Q++ NLLSNA+KFTA G V + V Sbjct: 550 RAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTAR-GEVTMRVFAGDN 608 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GIA + +F Q + G GLGL I++ + GG + Sbjct: 609 DTLCFAVRDTGIGIAPDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAV 668 Query: 459 RSKLREGVEVIAILPNTRVLNFIPED 484 +S EG LP T L P + Sbjct: 669 QSAPGEGSVFTLTLPVTAPLVGDPGE 694 >gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 697 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++ + + R AE N ++ FLA+MSHE+RTP+ AILG ++++ P N Sbjct: 303 ITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN- 361 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I R+G LL +IN+ILDLS+I+AG+ E+++ + IV E ++ +RA Sbjct: 362 ---LQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAA 418 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QY 402 EK + + + D + +V D +RQ+++NL+ NA+KFT G V +TV + Sbjct: 419 EKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDE-GVVRLTVRFDEANSCLQ 477 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI EI + F Q + G GLGL I + GQ + S+ Sbjct: 478 FHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQY 537 Query: 463 REGVEVIAI 471 G Sbjct: 538 GVGSRFTLS 546 >gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 250 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +AKS+F+A+MSHELRTPLNAILG+SE+++ + + + + IH +G+HLL LIN Sbjct: 1 MAKSQFIANMSHELRTPLNAILGYSEILQEDAQEIGEADFVTDLVK-IHSAGKHLLGLIN 59 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++LDLS+IEAG+ E+ L +++E I +Q +++ + + +L + AD+ Sbjct: 60 DVLDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEADQT 119 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------SGRGQYISIKDNGPGIAEGEI 417 +RQ +LNLLSNA KFT G + V + D G G+ + + Sbjct: 120 KIRQSLLNLLSNAAKFTN-NGIITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQK 178 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q + G GLGL I + + GG + S G LP Sbjct: 179 NKIFHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLPL 235 >gi|104782644|ref|YP_609142.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111631|emb|CAK16352.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 642 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 127/270 (47%), Gaps = 11/270 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L I + + D E + A + R+ AE+ N AKS FLA MSHELRTP+N Sbjct: 222 LGHLARHINNLASALDQAAHEQQQAMGQLIQAREEAEQANRAKSDFLAMMSHELRTPMNG 281 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +++E + EY S HLL +IN+ILD SRIE EL Sbjct: 282 VLGMLQLLETTQLTS----EQTEYTAVASESTGHLLKVINDILDFSRIERTTLELEHIDF 337 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +L +++ + Q AQ++ +++ ++ V D +RQ++LNL+ NA+KFT Sbjct: 338 NLGELISSSVQSFQHTAQQRGLDLHLQLPAGIDHLQVVGDPTRIRQILLNLVGNALKFTE 397 Query: 385 IGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V V W Q + +++D G GI + + +F Q +I G GL Sbjct: 398 R-GEVAVEARWQVLDRQLLWFTCTVRDTGIGIDSNRLEMMFVAFQQADSSISRRYGGTGL 456 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GL IA+++ GGQ S+ G Sbjct: 457 GLSIARTLAERMGGQLRGESREGLGSTFTL 486 >gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 633 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 23/353 (6%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG-- 191 A + ++ L L + + A+ A+ + A Sbjct: 147 LARDLALTGALFFGSAGLAILLANGLARRMARPMERLSEAMHETAVGGRFMPVEQAADDD 206 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + F ++ L ++ + AE + R A N+ KS Sbjct: 207 VFQSLIDSFNHLVARLRSNDQDLRGAMAE--------------LVKARDDANTANVLKSH 252 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN +L +EV++++ + P +E + I SG LL ++N++LDL Sbjct: 253 FLANMSHEIRTPLNGVLAMAEVMDMDDLKP----AQRERLAVIRESGGLLLAVLNDVLDL 308 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQ 370 S+IEAGR E+ + + + + +A+EK + + P +W D +RQ Sbjct: 309 SKIEAGRLEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGDVDRLRQ 368 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NL+SNA+KFT G G G I + D G GIA +P + F Q + Sbjct: 369 ILGNLISNALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGIAPEILPRLFDKFVQADSS 428 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFI 481 G GLGL I + + A GG ++S+ G + LP L + Sbjct: 429 TTRRFGGSGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPREETLTEV 481 >gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 604 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 4/234 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + E +I + ++ Sbjct: 371 EKIDRDRREFVANVSHELRTPLTTMRSYLEALADGAW--RDEEIAPRFIEVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y+L ++ + I + I +L +++N+ + V+ Sbjct: 429 RLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELT-KKENVSFVRDFPDEKIIVY 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV N++SNA+K++ GG + V G +S+KD G GI + ++ + Sbjct: 488 MDEDKITQVFDNIISNALKYSPQGGTITFRVK-KKGDYIEVSVKDEGVGIPKSDLSKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL IA+ ++ HGG+ S+ R+G + LP + Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLPIEQ 600 >gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 686 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 139/264 (52%), Gaps = 12/264 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A DE + RAE N+AKSRFLA++SHELRTPLN ILG ++++ + N + Sbjct: 159 EAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPL----NPEQRT 214 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ SG+ LL L++ ILD SRIEAGR +L+ + +V + +L RAQ+K +E Sbjct: 215 YVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLE 274 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405 I I L+++ D +RQ+++NL NA+KFT GG V V++ + ++I Sbjct: 275 IALDIADDLTALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARAGEGQREGFVLTI 333 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D GPGI E IP + F QG + +G GLGL I + ++ G RS + G Sbjct: 334 EDTGPGIPEERIPILFEEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRG 391 Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489 +LP P + T Sbjct: 392 SIFRVVLPL-PAAEGAPVPVPQPT 414 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 145/385 (37%), Gaps = 11/385 (2%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + + L T A ++AL++ Sbjct: 194 FTLTYLLEADGSAHLADATGLTGGHPAAPQTLPADGSGVWPVTALTHGESMLVPLDDAPF 253 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAE 227 + L + L + F ++S E L A Sbjct: 254 AELPAGDWPRSPSQALVLPLLQQGGSPYGFLVAGLNR-YRSLDDAYRGFVELVAGHLAAG 312 Query: 228 LEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + A+S + R+ E E + AK+ F +++SHE RTPL I+G E + + G + Sbjct: 313 IASARSYEAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRTQLAGA--DA 370 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E + +HR+G L L+N +LD SRIEAGR + L + + + + + Sbjct: 371 HIREELDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDK 430 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + P V+ D +VILNLLSNA+KFT G + VTV +++ Sbjct: 431 AGLGFHIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFD-GSIRVTVHA-EDTHAVVTV 488 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G+ E+P + F + A + +G G+GL + + ++ HGG S G Sbjct: 489 ADTGIGVPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGG 548 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQ 490 LP +P D ++ Sbjct: 549 TRFTVRLPFGSA--HLPADALAPSE 571 >gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 1381 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + S Q E + L A+ + +E K E + KS FLA+MSHE Sbjct: 631 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 690 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL S++ G L E I+ SG LL+LINEILDLS++EAG+ Sbjct: 691 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 749 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 +L + L + ++ + + Q A +K ++ P+L + D + ++Q++ NLL+N Sbjct: 750 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 809 Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 A KFT G V + + S+KD+G GI + + + +F Q Sbjct: 810 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 868 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ + GG+ ++S+ +G I P Sbjct: 869 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 916 >gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1331 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R ++V ++ G L E L I +L + + Sbjct: 600 RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 659 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208 ++++ F FL + ++ I++ D LA + + + Sbjct: 660 ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 719 Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 + + + L A+ E ++ R+ E + KS FLA+MSH Sbjct: 720 ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 780 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S ++L ++ + +K +E P + + D+ +RQV+ NLLS Sbjct: 839 MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 898 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V + V +KD G GI E + ++ +F Q Sbjct: 899 NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 957 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG + S G LP R Sbjct: 958 ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1007 >gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 383 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 3/300 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 78 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELSIAQAELQARADELQRASKYKS 137 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 138 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 196 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V M Q A EK + I ++ + D + + Sbjct: 197 ISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 256 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 257 QILKNLLSNAIKFTEA-GAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADG 315 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I++ + A GG + S +G +LP + V E +ES Sbjct: 316 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPESYVEQGPQEPGNESA 375 >gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] Length = 436 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 10/304 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA---EKDDLIAELEVA 231 + + +L A+ + L KS +K + A E D E Sbjct: 132 AGNLWQFGAQIFPIFLVVLILAIGVSLVVAKLLAKSLIKPIELMAQHLEDDKATETYEEI 191 Query: 232 KSLSDE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + D+ K ++ + + F A++SHEL+TPL +I G++E+IE + + Sbjct: 192 QPFMDKIHNQHKALKKSSKMRQEFTANVSHELKTPLASISGYAELIETGMAKEGD---IQ 248 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + +IH+S LL+LIN+I++LS+++ ++LS + +SL + V C+ MLQ+ A++ NI Sbjct: 249 HFASEIHKSANRLLSLINDIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNI 308 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 I I + A+++ +++VI NL NA+++ G V +V + + +KD+ Sbjct: 309 TIATDIIEKDCIIKANQEMIQEVIYNLCDNAIRYNKPEGHVWASV-FKKDDNIILQVKDD 367 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E ++ + F + A G GLGL I + I H + I S L EG + Sbjct: 368 GIGIPEDDLNRIFERFYRVDKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTTI 427 Query: 469 IAIL 472 I Sbjct: 428 SIIF 431 >gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1370 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 17/329 (5%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P +++ + + L + +++ DL Sbjct: 557 VQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGIAVDLTE 616 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ++ + AE N +KS FLA+MSHE+RTP+NAILG +++ + + Sbjct: 617 QMRR-ERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSEL----PQA 671 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+ I S + LL++IN+ILD S+IE+GR +L L ++ ++ K Sbjct: 672 AKDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAK 731 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401 +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 732 PVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQ-GEVTLSVRAFPSPEVGKIK 790 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S++D G GI + + + F Q + G GLGL I++ ++ GGQ ++S Sbjct: 791 LMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQLEVQS 850 Query: 461 KLREGVEVIA-----ILPNTRVLNFIPED 484 G + +LP + E Sbjct: 851 TPNRGSDFYFAITFAMLPAPTAEPELSEP 879 >gi|260768861|ref|ZP_05877795.1| sensor histidine kinase [Vibrio furnissii CIP 102972] gi|260616891|gb|EEX42076.1| sensor histidine kinase [Vibrio furnissii CIP 102972] Length = 796 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 9/258 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 Q E LI + + +A+ AKS FLA++SHE+RTP+N +LG ++++ Sbjct: 311 QDEIRYLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS 370 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + P ++ + ++ SG+H++ L+NEILD S+IE G EL S+ L I+ Sbjct: 371 DLKP----RQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTS 426 Query: 338 MLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + EK ++ ++D+ +RQ++ NLL+NAVKFT G V V + Sbjct: 427 VYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYR-GLVEVILEEE 485 Query: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + Q I ++D G GI + + F Q + G GLGL I + I Sbjct: 486 TVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMR 545 Query: 454 GQFLIRSKLREGVEVIAI 471 G + S++ G Sbjct: 546 GSVNVVSEVGIGTSFTIR 563 >gi|300703297|ref|YP_003744899.1| sensor hybrid histidine kinase [Ralstonia solanacearum CFBP2957] gi|299070960|emb|CBJ42268.1| sensor hybrid histidine kinase [Ralstonia solanacearum CFBP2957] Length = 610 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 192/488 (39%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69 + + P + LGL + ++ D L I VL V + ++ Sbjct: 1 MTASLRPLLNKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDAGNR 60 Query: 70 PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + G+ W Sbjct: 61 LALAGWCLIMLCLTASGLRFYFGYRYDITRMTLAAHTRKWWTGMRIMSAVGGVAWGSSAG 120 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++A Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILAPHFALAEQAFPEH 178 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L +F ++ + V+ + + E L A+ DE ++RA Sbjct: 179 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +ET + + Q + L Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLF 287 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 347 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLA 464 Query: 485 NHESTQYK 492 ++ K Sbjct: 465 AQPRSEQK 472 >gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 660 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTQQLREDKKKLEESEIELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N+ KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNDELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTVDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKSYKNGARFIFSHPIKK 654 >gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1364 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++ + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ + S G E ++ + + P+ E Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SSPPQAQRE 881 >gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 706 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 123/260 (47%), Gaps = 12/260 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ ++RAE AK+ FL++MSHELRTP++ ILG ++++ + N Sbjct: 439 ITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGILGMTQLLLESDL----N 494 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + + RS LL ++ +ILD +R++A +L + I+R+ + + +A+ Sbjct: 495 ERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAE 554 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 +K + P+ V D + ++Q++ L +NAVKFT G + + + Sbjct: 555 KKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHE-GEIRLATWLDTETPAGG 613 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D G GI + ++ F Q + G GLGL IA+ + GG Sbjct: 614 SGRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLS 673 Query: 458 IRSKLREGVEVIAILPNTRV 477 + S+ +G +P + Sbjct: 674 VESEPDQGSRFTLSIPVQPI 693 >gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 1297 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 130/265 (49%), Gaps = 7/265 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ + AE E R A+ N K FLA +SHELR+PLN ILG+ +++ Sbjct: 898 TEQKRIEAEREQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRLLQN-- 955 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L+ E + I R+ + LI ++LD+SRI G+ L+ + ISL ++ I Sbjct: 956 -GKLDLPRQTEALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIET 1014 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++L A+ KNI+I + ++S V D ++QV+ NLL+NAVKFT GG+V V + Sbjct: 1015 VRLAAEAKNIQILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQL-D 1073 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + I + D G GI +P V F Q G+GLGL I + I+ HGG Sbjct: 1074 QLAQIRVSDTGKGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKA 1133 Query: 459 RS-KLREGVEVIAILPNTRVLNFIP 482 S G LP + IP Sbjct: 1134 ESLGEDRGAIFTVQLPV--IQQTIP 1156 >gi|323484400|ref|ZP_08089766.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum WAL-14163] gi|323402178|gb|EGA94510.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum WAL-14163] Length = 1300 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+R + + AK FL+ MSHE+RTP+NAI+G + + E KE + I +S Sbjct: 912 RERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIKIDQSS 968 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q+LL+LIN+ILD+S+IE+G+ +L+ + S++ + E +++ + ++KNI + I Sbjct: 969 QYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVEN 1028 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDN 408 V+AD ++QVI+NL SNAVKFT GG++ +V + +++DN Sbjct: 1029 PWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDN 1088 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+ + +F Q +A G GLGL I+ ++ GG+ + S+ EG Sbjct: 1089 GIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRF 1148 Query: 469 IAILPNTRVLNF 480 L R Sbjct: 1149 SFTLRFIRAEEP 1160 >gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1235 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 16/310 (5%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + + + + + + + + I QA +++LI ++A Sbjct: 602 LTFAMATFFDITQRKQAENLLAEYNRTLEAQVKKRTEEFQQVIEQLQATQEELIQSQKIA 661 Query: 232 KSLSDETRKRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A A KS FLA+MSHELRTPLNAILGF++V+ + + ++ Sbjct: 662 AQEQQAAVREAARSAAANLAKSEFLANMSHELRTPLNAILGFTQVMSQDY---SLSSEHQ 718 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + I+R+G+HLLNLIN+IL++S+IEAGR L+ S+ LI ++ ML LRA K++ Sbjct: 719 ENLAIINRAGEHLLNLINDILEMSKIEAGRITLNRSSFDLIHLLNNLEEMLYLRAASKSL 778 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------- 400 ++ + + + DE + QV+LNLL NA+KFT IGG V + + W Sbjct: 779 QLVFEYAHDIPQYIETDENKLFQVLLNLLGNAIKFTDIGG-VTLRLRWEQEEENLSYNPR 837 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI EI + +F Q I KS QG GLGL I++ + GG + S Sbjct: 838 LFFEVQDTGCGITPQEIGLLFEAFEQTEIGRKSQ-QGTGLGLAISRKYVQLMGGDITVSS 896 Query: 461 KLREGVEVIA 470 G Sbjct: 897 TPGMGSTFAF 906 >gi|325680246|ref|ZP_08159808.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108063|gb|EGC02317.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 1019 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 141/269 (52%), Gaps = 11/269 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 ++ + +++LSD AE+ + AK+ FL+SMSHE+RTP+NAI+G + + P Sbjct: 484 EMRESMAQSRALSD-ALAAAEQASKAKTSFLSSMSHEIRTPMNAIIGLNAIALN---APE 539 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++Y+ I S HLL+LIN+ILD+SRIE+G+ L S ++ + + + Sbjct: 540 LTDKTRDYLEKIGSSANHLLSLINDILDMSRIESGKTVLKNEDFSFSKLLEQINTIFGAQ 599 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 +K ++ +I S+ + D ++QV++N+L NAVKFT GG V +TV T+ Sbjct: 600 CADKGLDYNCRIIGSVDAHYIGDNMKLQQVLINILGNAVKFTPEGGSVALTVERTAHFDS 659 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++I D G G++ +P + +F Q + + GLG+ I ++I+ G Sbjct: 660 RSTLRLTISDTGIGMSSEYLPKLFETFSQEDSSATNRYGSSGLGMAITKNIVEIMNGNIE 719 Query: 458 IRSKLREGVEV--IAILPNTRVLNFIPED 484 ++S+ +G L ++ PED Sbjct: 720 VQSEKGKGTTFIVTVTLMDSAYSESDPED 748 >gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1] gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1] Length = 1838 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + T+L + +++ + F FLS Sbjct: 1196 KRTILVENTPPGYLKISSGLGEAPPAHVIVLPVLFEGTVLGVIELASFTPFTQIQKDFLS 1255 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDL 224 ++ S I ++ L + + + EK +L Sbjct: 1256 QIAEMIGTSVNTISVNSRTELLLKQSQEMTEQLRERSDELENRQKALQAANAELEEKAEL 1315 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A+ EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 1316 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 1375 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1376 LADNA-DENLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 1434 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV- 391 + EK ++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G V Sbjct: 1435 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVI 1494 Query: 392 -------------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 ++ G S+ D G GIA ++ + +F Q Sbjct: 1495 RPAGTDVPPAIREQLLEAGSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTS 1554 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ S+ G LP Sbjct: 1555 RKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1596 >gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 606 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 118/421 (28%), Positives = 189/421 (44%), Gaps = 16/421 (3%) Query: 68 QNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT-L 126 WS A ++ + + W L L ++ L Sbjct: 157 PAEPPLAWSAALAMPVFAVTAICHVLSLALEFRRREGSWNDRLQQASARNALLLDVIDDL 216 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV-ALSTQAIMSMHVL 185 V + + A L + L L + + P + A+S + V Sbjct: 217 VTWHDRGGGVVQASRGALRLAGAAPQTLLGRGLLGRIHVQDRPAFLKAISDAGSLDGPVT 276 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 A + + +++ +A A + V + +S++ R+ AEE Sbjct: 277 VQVRLHTDLAASGEAGRVIWVEMRAHRVPPGARAGAPHHSAVVAVTRDVSEQ-RRHAEEM 335 Query: 246 NLA----------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 A KSRFLA +SHELRTPLNAI+GFSE++ E L E +EY IH Sbjct: 336 EQARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAEANLALPPERQREYAAIIH 395 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+HLL ++N +LDL++I++G ++ + L +V C ++QLRA + IE+ + + Sbjct: 396 GSGRHLLEVVNALLDLTKIQSGSFDFAPEPFDLRALVNGCCDLMQLRADQGGIELMRDVP 455 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 L + AD + RQ+++NLLSNAVKFT GGR+ V V R +S+ D G GIAE Sbjct: 456 RDLPELTADPRACRQMLINLLSNAVKFTPRGGRITVAVRAIYDR-IEMSVTDTGVGIAEA 514 Query: 416 EIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++P + F Q + +G GLGL + + ++ H G+ L+ S + G V+ +LP Sbjct: 515 DLPRLGDPFFQAGDSAAYARMHEGTGLGLSVVRGLVGLHDGELLLESSVARGTRVVVVLP 574 Query: 474 N 474 Sbjct: 575 L 575 >gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 96/263 (36%), Positives = 153/263 (58%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + ++ ++ AE N KS FLA++SHE+RTPLNAILGF+EV+ Sbjct: 705 RRFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMM 764 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E GP+ NE Y++Y+ DI SG+H+++L+ ++LDL++IEAG +LS + ++L D+V Sbjct: 765 EEQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGAS 824 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + ++Q +A + + + L V AD + MRQ LNL++NA+KFT GG+V V+ Sbjct: 825 VSLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAM 884 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T G + ++D G G+ EI T L F Q + A +G GLGLP+ ++++ + G Sbjct: 885 TDRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGT 944 Query: 456 FLIRSKLREGVEVIAILPNTRVL 478 + S+ EG V + P RVL Sbjct: 945 LRVTSRKHEGTLVEVLFPPARVL 967 >gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5] Length = 743 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 15/254 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + ++RAEE N K+ FLA+MSHE+RTPLNAI+GFS+++ E + Sbjct: 503 ITALKQTEQELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTE----EDP 558 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KEY + + LL +I+++LDLSRIE+G +L + L + RE + +L+ Sbjct: 559 EVRKEYNDIVSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTP 618 Query: 345 EKNIEIFQKIDPSLSSVWADEKG--MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 E E+ ++ L S + + Q++ N + NA+KFT G V V R Sbjct: 619 E---EVVLDVEKGLPSCTVCQYRQGLMQILANFIRNALKFTPK-GFVTVGFERKRDR-LS 673 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI E+ + F + + QG GLGL I +SI G Q + S + Sbjct: 674 LYVRDTGIGIPAEELDKIFERFYKVD----TFTQGTGLGLSICKSIAEQMGAQIGVDSAV 729 Query: 463 REGVEVIAILPNTR 476 EG +P Sbjct: 730 GEGSCFRVEMPIAE 743 >gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera] Length = 839 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 32/312 (10%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + Y L+ + + I+ + + ++ Sbjct: 240 ICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEM----------- 288 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E + RAE ++AKS+FLA++SHE+RTP+N ILG ++ + T ++Y Sbjct: 289 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS----TQRDYAQTAQ 344 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 G+ L+ LINE+LD ++IEAG+ EL +L I+ + + + +++ K +E+ + Sbjct: 345 ACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVS 404 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------------ 402 + V D RQ+I NL+ N+VKFT G + V V Sbjct: 405 DKVPEMVIGDPGRFRQIITNLVGNSVKFTER-GHIFVQVHLAEHTKALMDAKAETSSEKV 463 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +S++D G GI V T F Q + G G+GL I++ ++ GGQ Sbjct: 464 TLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFI 523 Query: 460 SKLREGVEVIAI 471 S+ + G Sbjct: 524 SRPQIGSTFSFT 535 >gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 548 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 151/271 (55%), Gaps = 4/271 (1%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNA 266 +S ++ Q + + + +++ + R AE N K FLA +SHE+RTPL+A Sbjct: 124 QSVIQQAHIQQRNELSLLKDRLSRQNVELARTNAELRRANRLKDEFLAGISHEVRTPLSA 183 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG +E++ + +GPLN+E E + I SG+HLL +IN++LDL++IEAGR+EL + Sbjct: 184 ILGLAELLRAKIVGPLNDEQV-EMLSRIEASGRHLLAVINDLLDLAKIEAGRFELEPRLV 242 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 + + R ++M++ A K+ + +DP + + ADE+ +RQ ++NLLSNAVKFT G Sbjct: 243 AAHQVCRSSLLMVKELALRKHQRVHINLDPKVEVLHADERRLRQALINLLSNAVKFTPPG 302 Query: 387 GRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V + + + I++ D G GIA +IP + F Q + + G GLGL + Sbjct: 303 GDVGLDLEGDPEQEIVRITVWDTGIGIAAEDIPRLFQPFSQIQNKYQHDQAGSGLGLVMV 362 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + HGG + S+ +G LP TR Sbjct: 363 ARLAELHGGGVSLVSEPGKGSRFTMTLPWTR 393 >gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 780 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 5/274 (1%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + KI+ E+ E R +AE N K FLA++SHELR+PLNA+L Sbjct: 363 RGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPLNAML 422 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+ ++ + I RS + L+ ++LD+SRI G+ L+ + L Sbjct: 423 GWLRLLNTRKFDEKTTAK---AMETIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVEL 479 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + ++ + ++ A+ K I + D + V D ++Q++ NLLSNAVKFT GG+ Sbjct: 480 VTVIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQ 539 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V V + + IS++D G GI +P V F Q +I G+G+GL I + + Sbjct: 540 VQVYLERVNSH-VEISVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLAIVRHL 598 Query: 449 MANHGGQFLIRSK-LREGVEVIAILPNTRVLNFI 481 + HGG +S+ +G LP + + Sbjct: 599 VELHGGSVRAQSEGEGKGATFTIKLPLMPIRQNL 632 >gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1478 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 226 AELEVAKSLSDE--TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 A+ E + L E R+ AE N K FLA +SHELR+PLN ILG+++++ G + Sbjct: 1081 AQEEQKRLLEREKLAREEAERVNRIKDEFLAVLSHELRSPLNPILGWAQLLRS---GSFD 1137 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + + I R+ + LI ++LD+SRI G+ L+ + ++L ++ I ++L A Sbjct: 1138 KANQNKALEIIERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSA 1197 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 Q K+IEI + + + D ++Q++ NLLSNA+KFT GG++ + + + + Q I Sbjct: 1198 QAKSIEIKTNLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQ-I 1256 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-L 462 ++KD+G GI +P V F Q G+GLGL I + ++ HGG S Sbjct: 1257 TVKDSGKGIDPQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGE 1316 Query: 463 REGVEVIAILPN 474 +G I P Sbjct: 1317 NQGSTFIVQFPL 1328 >gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501] gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501] Length = 796 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 16/274 (5%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + + AE + +L E K+AE N AK+ FLA+MSHE+RTPLNAILGF Sbjct: 485 AIAQANLLAENKKQLEKLNQQNIQLQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGF 544 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+++ + + P N ++ I S +LL LIN+I +L R+E+G ++ ++L + Sbjct: 545 SDLLSQKIIDPENV----NHLQSIIFSSNNLLALINDIFELIRLESGIVKVESETVNLTE 600 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRV 389 I+R+ +A +KNI++ ++ ++ + D+ + Q+I NLLSNA+KFT G V Sbjct: 601 IIRQIYYKFSEKANQKNIKLIVNLNKNIPDILEFDKLKLYQIINNLLSNAIKFT-KLGSV 659 Query: 390 HVTV----------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 V V I IKD G GI++ + + F Q S +G+G Sbjct: 660 KVDVWANYFQSDLKTRQENCSIVIRIKDTGIGISQEKQKIIFDRFTQVSQETNREYEGIG 719 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 LGL + Q ++ G + S+L +G + LP Sbjct: 720 LGLTLTQKMIQLLEGNLKLESELEKGTTITVTLP 753 >gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 479 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 153/327 (46%), Gaps = 13/327 (3%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITY 205 L + A+ Y + ++ + ++S V I + + ++ L + I Sbjct: 159 LIMGAVFMHSPLYEINMALESAYRFIWLSLLISASVATILIYWISQRISQPLIEMSDIAK 218 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + K + + + KD++ +++ E + F++S+SHEL++PL Sbjct: 219 SMSKGDFSQKATVSSKDEVGQLATSFNKMAE----ALENLEDMRRGFVSSVSHELKSPLT 274 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I GF + I G + E +Y+ + L +I E+L+LSR+E+ +++L+ S Sbjct: 275 SIRGFVQGILD---GTIPTEEQTQYLTIVLEETDRLNKIIKELLELSRMESSQFQLAMSN 331 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + +++R ++ + R ++K +++ + V AD+ + +V++NL+ NA+KFT Sbjct: 332 FDVNELIRRVLLKQEKRIEQKELDVQIDFEQDRCMVEADKDRIEEVLINLIDNAIKFTPE 391 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GR+ V+ G YIS+ D+G GI+E ++P + F + A GLGL I Sbjct: 392 KGRLIVST-RVEGNKVYISVSDSGIGISEEDMPHIWERFYTADKS--RASGSTGLGLSIV 448 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAIL 472 + I+ H ++S +G L Sbjct: 449 KRIIEQHRQSIWVKSIPGKGTTFTFTL 475 >gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 987 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 17/281 (6%) Query: 222 DDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + ++L+ A +E RK+AE+ + AKS FLA+MSHE+RTP+N +LG + ++ Sbjct: 436 EQRTSQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLL 495 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + P+ K Y I+RSG+ LL ++N++LD S+IEAG E+ L +V + Sbjct: 496 IDSGLNPI----QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVED 551 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 ++ +AQEK + I+ + W D + QV+ NL+ NA+KFT G ++V+ Sbjct: 552 TFQLMNGKAQEKKLLFSYHIESDVGRYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVS 611 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + + D G GIA+ + T+ +F Q + G GLGL I++ I+ Sbjct: 612 LNPEDETQVLFEVSDTGIGIAKKDQKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAM 670 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GG + S G +P P + +C Sbjct: 671 GGCLEVDSDEGHGSRFWFSIPLE---ESEPVETVSIASARC 708 >gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 682 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 9/276 (3%) Query: 209 KSNVKILS-CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + +L A +DL + E A + + A N AKS FLA MSHE+RTPLN + Sbjct: 125 REHYAMLRQANAAMEDLNTQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGV 184 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G + V+E + ++ +E + I SG+ LL ++N+ LD S+IEAGR EL + Sbjct: 185 IGMTGVLEATEL----DDEQRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFD 240 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L E +L +A K +E+ + + D +RQ+ +NLL NAVKFT G Sbjct: 241 LRGCAEEAAELLAGKAFAKKLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAG 300 Query: 387 GRV-HVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V G + ++D G GIA + + SF Q + G GLGL Sbjct: 301 EIVLQIRVLEFDGEAYALQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLA 360 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 I++ + GG + S++ G + + R Sbjct: 361 ISKRLAELMGGTMWVESEVGRGSAFLFTIRARRADP 396 >gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 1370 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + S Q E + L A+ + +E K E + KS FLA+MSHE Sbjct: 620 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 679 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL S++ G L E I+ SG LL+LINEILDLS++EAG+ Sbjct: 680 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 738 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 +L + L + ++ + + Q A +K ++ P+L + D + ++Q++ NLL+N Sbjct: 739 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 798 Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 A KFT G V + + S+KD+G GI + + + +F Q Sbjct: 799 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 857 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ + GG+ ++S+ +G I P Sbjct: 858 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 905 >gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1333 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R ++V ++ G L E L I +L + + Sbjct: 602 RIAFGRTLVGQAARSRRTIMVNELPPGYLTISSGLGEVVPAALVLLPIVVEGQVLGVIEL 661 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHLF 208 ++++ F FL + ++ I++ D LA + + + Sbjct: 662 ASVAAFSQINRDFLEMLMETIGVNVNTIVANARTDELLAESQRLTGELQARSAELQTQQE 721 Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 + + + L A+ E ++ R+ E + KS FLA+MSH Sbjct: 722 ELQHSNAELEDKASLLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 781 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 782 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 840 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S ++L ++ + +K +E P + + D+ +RQV+ NLLS Sbjct: 841 MDVSPERVTLRQLIEYVEATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLS 900 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQY-----------ISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V + V +KD G GI E + ++ +F Q Sbjct: 901 NAVKFTERGG-VELAVEPAPDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQ 959 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG + S G LP R Sbjct: 960 ADGTTSRKYGGTGLGLSITREIAQLLGGAVTVDSTPDRGSTFTLYLPVAR 1009 >gi|225175428|ref|ZP_03729423.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169180|gb|EEG77979.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 546 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 10/364 (2%) Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 A+ + E + I+ A L++ + I + L A + V+ Sbjct: 185 AGALSVVINAQPYYEELYRSIGQQVIFVLALLVVIIGILYVLQRKLVTAPLEGLAAMTVS 244 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L S ++ G + F ++ L + E+ + E + + Sbjct: 245 LGQGDFSSTD-SPVNGQGEIRILEERFRTMSRELAGIYQGLEQKVKERTVELEEEKEKLA 303 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + E+ N +S FLAS+SHELRTPL+ IL F E++E ++ + D Sbjct: 304 RIN---HDLEKMNRLQSEFLASVSHELRTPLSCILAFIELLEAPAFAH----QRQQNLAD 356 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + S + LLN++N +LD +++EAG E +IV+ I A+EK++ + Sbjct: 357 LKSSSEKLLNMVNNLLDTAKLEAGAIEPDIQEHRADEIVQGTIKAFMPLAREKSLTVTSD 416 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGPG 411 I+P L V D + +RQV++NLL NAVKFT GGR+ V V + ++D G G Sbjct: 417 IEPGLPRVKCDVERVRQVLVNLLGNAVKFTDPGGRITVRVNSEGKTQQYVVFRVEDTGAG 476 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+ E + F QG++ + + G GLGL +++ ++ GG+ + S+ +G Sbjct: 477 ISREEKEVIFQRFRQGAVPVNKKQAGSGLGLYLSKGLIEMQGGEIGLESEPGQGTAFWFR 536 Query: 472 LPNT 475 LP Sbjct: 537 LPAA 540 >gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1180 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 19/259 (7%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D I A+ R+ AE N AKS FLA+MSHE+RTP+NAI+G +++ ++ Sbjct: 643 DDITAQRRAQDDLMRAREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDITLQTSLTT- 701 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ + S QHLL +IN+ILDLS+IEA + L L VR + L+++ Sbjct: 702 ---EQRDYLKTVMDSAQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTTLKGLEMQ 758 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-- 399 A++K ++ ++D + V D +RQV++NL+ NA+KFT G + V V + Sbjct: 759 ARQKGLDFVLELDQDVPACVKGDPLSLRQVLMNLVGNAIKFTHK-GSIRVLVSPAQAQPD 817 Query: 400 -------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 G + D G GI E + T+ SF Q A G GLGL I + ++ Sbjct: 818 ADDQRTVGVRFEVADTGIGIPESFMGTIFQSFSQ----TTRAFGGTGLGLAICKQLIGLM 873 Query: 453 GGQFLIRSKLREGVEVIAI 471 GG + S + G + Sbjct: 874 GGDISVTSTMGRGSVFSFV 892 >gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 902 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 14/317 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + V + L F TY TY L + + + + I E + Sbjct: 366 VIPYVREHGVWEGELQAKSLDGHIFATYETYFLLRDENGKATSVGDIMNDITEQKYVSME 425 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ ++ AE+ + AKS FLA+MSHE+RTPLNAI+G++++I + L + ++ I Sbjct: 426 LEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLISED--NQLTGVSRTRFLS-I 482 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G LL LIN+ILD++RIE+GR L E ++L V + + Q +AQEK +E+ + Sbjct: 483 ASAGHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQGQAQEKGLELIVEC 542 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 D VW D +Q+I NLL NAVKFT G V V R +ISI+D GPGI Sbjct: 543 DIDERRFVWIDPVKFQQIITNLLGNAVKFTDQ-GYVKAVVQIVEDR-IHISIEDTGPGIE 600 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + T F QG A G GLGL ++ +++ G ++S G ++I LP Sbjct: 601 AELMDHLFTPFIQGKAGE--ASGGTGLGLSLSTTLVKLMNGTLSVKSSEGVGTQIIVDLP 658 Query: 474 NTRVLNFIPEDNHESTQ 490 ++V ++ EST Sbjct: 659 LSKV------EDSESTD 669 >gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586] gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586] Length = 967 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 22/302 (7%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------------- 235 + +A A + Q K+ L +E Sbjct: 396 MGQAIAHARDTAKALKVVAESEVRAKRELQQHKEHLEELVEQRTHQLSDMNHKLNQEVLN 455 Query: 236 -DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R +AE+ + AKS FLA+MSHE+RTP+N +LG + +++ ++ T + Y+ I Sbjct: 456 HAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTS----TQQHYVQVI 511 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +RSG+ LL ++N++LD S+IEAG E+ ++ L +VRE ++Q RA EK I++ + Sbjct: 512 NRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQF 571 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGI 412 ++ W DE + QV+ NL+ N +KFT G V + + +G+G ++D+G GI Sbjct: 572 ADGVTQFWQGDEIRIGQVLNNLVGNGIKFTEQ-GEVCIQICQDPAGQGIRFEVQDSGIGI 630 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A+ E ++ +F Q + G GLGL I++ ++ GG+ + S+ +G L Sbjct: 631 AQEEQASLFDAFTQAEAGR-RKQGGTGLGLAISRKLVQAMGGEMRLSSEQGQGSCFSFTL 689 Query: 473 PN 474 P Sbjct: 690 PL 691 >gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] Length = 827 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 6/285 (2%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ ++ + I E++ +S + +A N AKS FLA+MSHE+RTPLN +L Sbjct: 421 RNEQGVVERFIAIERDITEVKRLESDLETEALKARRANEAKSAFLATMSHEIRTPLNGLL 480 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +++ + ++ + SG+HLL+++N+ILDL+++E+ L + Sbjct: 481 GMLQILNDDIRDL----EQRKVLRLALNSGEHLLSILNDILDLAKVESDALALDIHPFKM 536 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 DI+ + Q EK I D +RQV+LNL+ NA+KFT G Sbjct: 537 ADIITPVEVTYQGLCSEKGIVFNVDNHCSDDCYYCGDSVRIRQVLLNLVGNALKFTKT-G 595 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 ++V + ++D+G GI + + ++ F Q ++ G GLGL I Q Sbjct: 596 HINVCIKALESPFVEFCVEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTGLGLAICQK 655 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 ++ GQ + S L +G + ++ L + E+ E + K Sbjct: 656 LVTLMNGQISVESGLGKGSQFRFVISLPSDLGEVIEEKTEDVKGK 700 >gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8] gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8] Length = 1111 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 9/293 (3%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 +S + + +++ + L+ + + ++ AE N KS FLA Sbjct: 818 GTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLA 877 Query: 255 SMSHELRTPLNAILGFSE--------VIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 +MSHE+RTPL +I+GF+E ++E P ++ I SG LL ++ Sbjct: 878 NMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLD 937 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +L+LSR+EAG EL S + L D V E + + +A + I++ + DE Sbjct: 938 TVLNLSRLEAGEMELDCSPLDLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEG 997 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 G+R + NL+SNA+K+T GG V V G + ++D G G+ +P + F Q Sbjct: 998 GLRIALQNLISNALKYTEEGGTVRVRAGRRGDD-VALEVEDTGVGMDPDHVPELFEPFRQ 1056 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 S +G GLGL + + + GG + + +G +P + Sbjct: 1057 ESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGDGSCFTVRVPAADAPD 1109 >gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] Length = 591 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E +R E + F+A++SHELRTP+ + G+SE I + + E E++ Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ L L+NE+LDL+R+E+G EL + + V + Q A++K +++ Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D M QV+ NL+ NA++ T GG V + V T G ++D+G G Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTENSGLTFEVQDSGAG 524 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 I E +IP + F + A ++ G GLGL IA++I+ H G+ + S + EG Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSV 584 Query: 471 ILPNT 475 LPN Sbjct: 585 YLPNR 589 >gi|311748342|ref|ZP_07722127.1| sensory box histidine kinase PhoR [Algoriphagus sp. PR1] gi|126576851|gb|EAZ81099.1| sensory box histidine kinase PhoR [Algoriphagus sp. PR1] Length = 358 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 163/349 (46%), Gaps = 12/349 (3%) Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 ++IAL+IS L L + ++VA +S +++I+L ++ + Sbjct: 7 GIAVIIALAISMLVAAFLSLLDTTTATILMVAGGISFSVSYLLINITLEFLVFREIGNIY 66 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA------KSRFLAS 255 + + K + S ++ K + + K ++ R +E + + F+A Sbjct: 67 TLLEKIQKKELSEFSDKSSKSSISPLRRINKVINSYALARQKEIDTLQKNAEFRREFIAD 126 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHEL+TP+ A G+ + + + E +++ +S L L+ ++L L+++E Sbjct: 127 ISHELKTPIFATQGYIHTLLDGAID--DKEVRMKFLKRAAKSLDSLDVLVQDLLTLNQME 184 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILN 374 +G + + + L D++ E I L+ +A ++ +++ + D + AD++ + +V N Sbjct: 185 SGVIKFTFTQFDLKDLLLEVIDQLEHKASKRKVDLVFQYDEKEDYITSADKQKIYRVCQN 244 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NAVK+ G+V V++ TS ++ IKDNG GI ++ + F + + Sbjct: 245 LIFNAVKYNNNQGKVKVSLK-TSKHNLHVEIKDNGQGIPPEDLKRIFERFYRVEKSRNKK 303 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 E G GLGL I + I+ H + + S + +G LP V +PE Sbjct: 304 EGGTGLGLAIVKHILEGHKSKISVSSTVGKGSIFSFSLPL--VKQVLPE 350 >gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 1370 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 14/288 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + S Q E + L A+ + +E K E + KS FLA+MSHE Sbjct: 620 LRVTNEELEERTKALESQQVEMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHE 679 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL S++ G L E I+ SG LL+LINEILDLS++EAG+ Sbjct: 680 LRTPLNSILILSQLFANNKDGNLT-AKQIESAKAINSSGSDLLSLINEILDLSKVEAGKI 738 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 +L + L + ++ + + Q A +K ++ P+L + D + ++Q++ NLL+N Sbjct: 739 DLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTN 798 Query: 379 AVKFTAIGGRVHVT-----------VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 A KFT G V + + S+KD+G GI + + + +F Q Sbjct: 799 AFKFTHE-GAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQA 857 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ + GG+ ++S+ +G I P Sbjct: 858 DGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVIFPTR 905 >gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 977 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTPLN I+G +E++ + ++++ + S LL++IN+ILD Sbjct: 398 DFLANMSHEIRTPLNGIIGLTELVLKTDL----EPKQRDFLEKSNLSSHALLDIINDILD 453 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 S+IEAG+++L L ++++ + + + +A +K I + I + + + D + Q Sbjct: 454 YSKIEAGKFDLENKPFELNNVIQNIMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQ 513 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++ NL+ NAVKFT G + + V T S++D G G+ + F Q Sbjct: 514 ILTNLVGNAVKFT-ESGHIGIRVISTDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQ 572 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +I G GLGL I++ ++ GG + S+ G I Sbjct: 573 ADTSITRKYGGSGLGLAISKQLVQMMGGDIWVESEEGIGSRFIFT 617 >gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ] gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ] Length = 735 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 10/249 (4%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA+MSHE+RTP+NAI+G +++ + P K Y+ + + LL++IN Sbjct: 354 QAKSEFLANMSHEIRTPMNAIIGLAQLTLETRLDP----QQKSYLERLRNASTALLSIIN 409 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S+IEA + E++ ++L DI+++ + + Q A+EK +++ +I + + D Sbjct: 410 DILDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDP 469 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLT 422 + QV+ NL+SNAVKFT G V + + I + D G GI + + + Sbjct: 470 LRLGQVLNNLISNAVKFTERGSVTVRAELADRDDQQVIIRILVSDTGIGIDKEQSERLFQ 529 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480 F Q +I G GLGL IA++++ GG + S +G L + Sbjct: 530 PFTQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGSTFAFTTRLDLAATVPS 589 Query: 481 IPEDNHEST 489 P+ + Sbjct: 590 QPDQPQHTP 598 >gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] Length = 586 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 123/247 (49%), Gaps = 7/247 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E ++ F++++SHEL+TPL +I+GF + ++ M + +T + ++ I Sbjct: 347 RRLE---QMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAM--EDADTARHFLDIISIESG 401 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+ +IL LS IE+ +++ S ++L +I R+ +L+ +A +K + +++ +L Sbjct: 402 RLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLP 461 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + + Q+++N++ NAVK+T G + G I + D G GI ++ Sbjct: 462 PFACNRDRISQMLINIIENAVKYTEHGSVIT--TIEKRGDNLKICVSDTGIGIPADQLDR 519 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 V F + + G GLGL I + I+ + G + S++ +G E LP R Sbjct: 520 VFERFYRVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGSEFTIFLPYRRASK 579 Query: 480 FIPEDNH 486 ++H Sbjct: 580 RPLTEDH 586 >gi|169616908|ref|XP_001801869.1| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15] gi|160703288|gb|EAT81339.2| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15] Length = 1239 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 701 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 760 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 761 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 816 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V V Sbjct: 817 FNALKSLASRANERKLNLAYDVSYKVPDYVIGDSFRLRQIILNLVGNAIKFT-EHGEVKV 875 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + + ++ D G GI ++ + +F Q + G GLGL I Sbjct: 876 AISMAQDQDCGADQYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 935 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG+ + S +G Sbjct: 936 SKRLVTLMGGRMWVESDFGKGSVFYFT 962 >gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator motifs [Rhizobium leguminosarum bv. viciae 3841] Length = 2099 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 167/392 (42%), Gaps = 24/392 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +LV + + + + L ++ + + +++ F FL Sbjct: 1277 ARRILVTDLPDNVVPISSGVFMTLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLD 1336 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + +I + + L A + L ++N ++ + ++ Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395 Query: 227 ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+E ++ R+ EE + KS FLA+MSHELRTPLN+IL + + Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ + E+ IH +G LLNLI++ILDLS+IE+G + IS+ +++ Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEISVSNLLEVMARPF 1514 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A+ +N+ ++ ++ + D K ++Q++ NLLSNA KFTA GG V + V + Sbjct: 1515 RHEAENRNLSFAVEVGADITKSIITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573 Query: 399 RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GI + + +F Q + G GLGL I+ Sbjct: 1574 GWSSDHPSLKHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + + GG+ +RS G + LP T V Sbjct: 1634 RELANLLGGEIQLRSTPGVGSTFVLYLPLTYV 1665 >gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010] gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010] Length = 1177 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 11/285 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I + + + + L ++ ++ + A E + KS F+A++SHE+RT Sbjct: 474 IIRDITEQILDKKQLENLNSSLEEQVRTRTEELEKAKNEAIEASNMKSGFVANVSHEIRT 533 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILG +++ E + NE + Y+ +S + LL LIN+ILDLS+IEAG+ E+ Sbjct: 534 PLNGILGMHNLLKRENL----NEKQESYLQMATQSAKSLLMLINDILDLSKIEAGKLEIE 589 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVK 381 I+LID + + +RA +KN+EI + + V D+ +RQ++ NL+SNA+K Sbjct: 590 SLPINLIDSFSQAANSMAVRAMDKNVEIVLDLADIKHTVVIGDDLRIRQILNNLISNAIK 649 Query: 382 FTAIGGRVHVTVGWTSG--RGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 FT G + V+ T + I S++D G GI + ++ + +F Q + Sbjct: 650 FTDK-GEIIVSAATTEDVAGARVILDVSVQDTGVGIDKAKLNQLFKAFSQEDSSTTRKYG 708 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I ++ + G+ + S+ G L + Sbjct: 709 GTGLGLSIVSNLCSLMNGECHVESEKNVGSTFSFRLSLKPIEKEQ 753 >gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23] gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071] gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23] gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071] gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99] Length = 596 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398 A+E +E+ +++ D M QV++NL+ NA++ T G+V + Sbjct: 457 LAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 516 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 R I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 577 SVESELGKGSDFIITLPLYK 596 >gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 609 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 23/315 (7%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD------------------ 222 LA + + + L ++ +A+ Sbjct: 147 QQPPSAWRLADDSGSVMGWLIIAAAPLSSDRESLIESKAQLRSQLMSRSANYCTTALVQL 206 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + E N K++FLA+ SHE+RTPL++I+GF+ ++ P Sbjct: 207 RHILSWQQQYQQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEP- 265 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +EY+ I SG+HLL LIN+ILDLS+IEA + E+ + + + + +++ + Sbjct: 266 TIERQREYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEK 325 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQ 401 A K++ + +IDP ++++ AD ++Q++LNLL NA+KFT+ G V + + Sbjct: 326 AANKDLRLCLEIDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS---VGLQVVAKGISV 382 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++ D G GI++ + + + Q + A+ +G GLGL + + + HGG + S+ Sbjct: 383 HFTVWDTGSGISQEDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESE 442 Query: 462 LREGVEVIAILPNTR 476 + G +LP + Sbjct: 443 VDSGSRFTLVLPLQQ 457 >gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 576 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 LIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569 >gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] Length = 781 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 9/255 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + AEE AK++FLA +SHE+RTPLN I+G S+V+ + P Sbjct: 362 ERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLSGPLDP 421 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + I SG+ LL +IN+ILDLS++EAG+ E+ + L ++ + +++ Sbjct: 422 ----EHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRP 477 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 A EK + + + + D +RQV LNL+ NA+KFT G V + +G Sbjct: 478 LANEKGLSLSVDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRA-GAVSLRAAVDTGAA 536 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++++D G GI + + +F Q A G GLGL I++ + GG Sbjct: 537 PPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDIT 596 Query: 458 IRSKLREGVEVIAIL 472 + S +G Sbjct: 597 VTSVPGKGSCFTMEF 611 >gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 499 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLNAI+G+SE++ + + E + + IHR+G HLL LI++I Sbjct: 245 KSTFLANMSHELRTPLNAIIGYSELLIEDAVDA-QEEDLESDLRRIHRAGTHLLGLISDI 303 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAG+ +L +L ++ + + + A ++ + S++AD + Sbjct: 304 LDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSGQPGSIYADPVRV 363 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEI 417 RQ+++NLL NA KFT G + + + + D G G++E ++ Sbjct: 364 RQILINLLGNACKFT-ENGTISLRIAIEGDDYAAGHDKSTGNAILFEVTDTGIGMSEDQM 422 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F Q + G GLGL + + GG + S+L +G + LP Sbjct: 423 ARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQGSTFMVRLPMRDP 482 Query: 478 LN 479 Sbjct: 483 EE 484 >gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1225 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 153/279 (54%), Gaps = 21/279 (7%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L ++ +L+A+ + E ++ A+ NLAKS FLASMSHELRTPLNAILGF++ Sbjct: 709 SQLGVAVQQAELLAKTQQQAQELQEAKEAADAANLAKSEFLASMSHELRTPLNAILGFAQ 768 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + +Y+ I R+G+HLLNLIN+IL++S+IEAGR L+E L+ ++ Sbjct: 769 LM---NYDSSIKVEHHQYLEIISRAGEHLLNLINDILEMSKIEAGRVTLTEDDFDLLHLL 825 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 ML L+AQ K + + ++D +L V DEK +RQV++NLL NA KFT G V + Sbjct: 826 ENLEKMLCLKAQSKGLLLTFELDETLPQWVRGDEKKLRQVLINLLGNATKFT-ESGCVTL 884 Query: 392 T--------VGWTSGR-------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 V T + D G GIAE E+ + +F Q + +KS + Sbjct: 885 RSFRVNQAKVRETENSLIKNDALRIRFEVADTGLGIAENELKRLFQAFSQTTTGLKSG-E 943 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I+Q + GG+ ++S++ G +P + Sbjct: 944 GTGLGLSISQQFVQLMGGEITVKSQVNVGSTFAFEIPMS 982 >gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 788 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 106/285 (37%), Positives = 152/285 (53%), Gaps = 12/285 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDET------RKRAEEENLAK 249 T I H K L +A DL A L+D + RAE+ N AK Sbjct: 478 ITRIKEHEQKLVENDLRLRATVIDLKRTQATLERQALKLADLAQKYADQKNRAEDANRAK 537 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHELRTPLNAI+GFSE++ G L ++ Y EY DI SGQ+LL +IN++L Sbjct: 538 SKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVL 597 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+S+IEAGR L A L ++ E + ++ R +K++ + + + S+ AD + ++ Sbjct: 598 DMSKIEAGRMNLDMEAFDLTGVLDESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVK 656 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+++NLLSNA+KFT GGR+ ++I D G GIA + + F Q Sbjct: 657 QILVNLLSNAIKFTPDGGRIMARSKIFE-NFITLTIADTGIGIASHALRKLGKPFEQVES 715 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + G GLGL IA+S++ H G +RSK G V LP Sbjct: 716 QLTKTHAGSGLGLAIAKSLVNLHNGSMKLRSKPGVGTVVRVTLPR 760 >gi|116621999|ref|YP_824155.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225161|gb|ABJ83870.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 626 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 21/395 (5%) Query: 96 SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155 S ++ G + + L+G + +L Y+ + + L + Sbjct: 5 SLLRRGRLRAAGLIYLLGIWVMSTGIIVLNRGIHSVGLVYYVALPVTGAWLFGFQGALRI 64 Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKI 214 + + + L ++ + L K + + Sbjct: 65 AAGCVGSALVLALLEMAGLPLPTYFPERPFGIWTMVAAATVMTTVPVARVLQLLKQTLTM 124 Query: 215 LS-----CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + L ++ + E R +A+ + AKS FLA+MSHELRTPLNAILG Sbjct: 125 HRAAQKALREYQSRLEEVVQRRTAELVEARDQAQAASRAKSVFLANMSHELRTPLNAILG 184 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FS+++ GP +E ++ + I RSG HLL++I+E+LD ++IE G ++A+ L Sbjct: 185 FSKLVR---GGPGLSEVQRKDLDIISRSGAHLLDMIDEVLDRAKIETGGVTTKKTAVDLH 241 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +V E + +++ RAQ KN+E + + + +D +RQV+LNL NA+KFT G Sbjct: 242 RVVHEVVELMRPRAQAKNLEFVFEHPETYPYCIRSDAGKLRQVLLNLTGNAIKFTQR-GS 300 Query: 389 VHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 V + + G + + D G GIA + + F Q A +G GL Sbjct: 301 VTLRLWLEPMAGDAPGSQMLLTLDVSDTGIGIAPEDQERIFEPFAQAGNG--GAARGTGL 358 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GL I++ + GG ++S LR G LP Sbjct: 359 GLSISREFVRAMGGSLAVQSILRVGSRFHVELPVE 393 >gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 769 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI + + + + +++ EE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 526 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH---- 580 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E +E+ I + + LL L+N+ILDLS+IEAG+ + S ++ + R Q R Sbjct: 581 SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 ++ + ++ +I +++++ + QVI N L+NA KFT G + +G+ G Y Sbjct: 641 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI +P V F + S QG GLGL I Q+I+ N G+ + S+ Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752 Query: 463 REGVEVIAILPNT 475 +G +P Sbjct: 753 GKGSTFWFTIPCA 765 >gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 769 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI + + + + +++ EE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 526 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH---- 580 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E +E+ I + + LL L+N+ILDLS+IEAG+ + S ++ + R Q R Sbjct: 581 SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 640 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 ++ + ++ +I +++++ + QVI N L+NA KFT G + +G+ G Y Sbjct: 641 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 696 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI +P V F + S QG GLGL I Q+I+ N G+ + S+ Sbjct: 697 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILENLHGKIGVESEE 752 Query: 463 REGVEVIAILPNT 475 +G +P Sbjct: 753 GKGSTFWFTIPCA 765 >gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 744 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 91/340 (26%), Positives = 158/340 (46%), Gaps = 21/340 (6%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + P ++A + M + + + A + + + + K Sbjct: 103 VIGRTFVPDLPEGERPRMLASFSGLSMPPYRIRYDERTLTARGARCIAWEEFAIRDEDGK 162 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 ++ QA D + + + A+ ++A+E N AKS FLA+MSHE+RTP+N ++G +++ Sbjct: 163 LVEIQAVGRD-VTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKL 221 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + P + Y + SG+ LLN+IN+ILD S+IEAG+ L E+A +++ Sbjct: 222 LLDTKLDP----AQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLE 277 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +L RA +K +EI +I PS+ + DE +RQ++LNL NA+KFT GG V + Sbjct: 278 SVAELLAPRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGG-VALR 336 Query: 393 VGWTSGR--------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 + G + ++D G G+ E + F Q + +G Sbjct: 337 LLREETSPAGRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGT 396 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 GLGL I + ++ G+ + S+ G A LP L Sbjct: 397 GLGLAITKRLVGAMEGRIEVESEEGRGSVFRAHLPLRLAL 436 >gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1431 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 10/246 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L++ ++ AE N+AKSRFLA+MSHE+RTPLN +LG +E++ ++ + Sbjct: 744 ITPLKLTAQELVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSL----S 799 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + RSG LL +IN+ILD S+IEAG+ EL + L +V E + + A Sbjct: 800 AKQQSLLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAG 859 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E+ I + S+ D +RQ++LNL+ NA+KFTA G V V + Sbjct: 860 NKKLELTYFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQ-GEVTVAFALAEQHADTL 918 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + T+F Q + G GLGL I + ++ GG+ + Sbjct: 919 TLACRVRDTGIGIPDAAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLV 978 Query: 460 SKLREG 465 S +G Sbjct: 979 SAPGQG 984 >gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1778 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 167/402 (41%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + +L + +++ + F FL+ Sbjct: 1132 KRTILVTDAPSGYLKIASGLGEAPPAQVIVLPVLFEGKVLGVIELASFTPFTQIQKDFLN 1191 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I + L K+ + EK +L Sbjct: 1192 QIAEMIATSVNTISVNTKTEQLLKQSQELTEQLRLRSEELEQRQKALQASNAELEEKAEL 1251 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A+ E S +E R+ EE +S FLA+MSHELRTPLN++L +++ Sbjct: 1252 LAQQNRDIEAKNSEIEEARQVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKL 1311 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ ++ Sbjct: 1312 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLID 1370 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + EK +++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G + + Sbjct: 1371 YVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVI 1430 Query: 392 TVGWT-------------------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 S+ D G GIA ++ + +F Q Sbjct: 1431 RPARDDVPQAIREQLLEAGSLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 1490 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 1491 RKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1532 >gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1055 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 97/265 (36%), Positives = 152/265 (57%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E G Sbjct: 789 LRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGS 848 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 849 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQP 908 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 909 QANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEMNGDV 968 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------AEQGVGLGLPIAQSIMANHG 453 + ++D G G+ + E+ L F Q + + +G GLGLP+ ++++ + Sbjct: 969 VMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMVEANR 1028 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S G V P TRVL Sbjct: 1029 AQFAIDSTPGHGTVVEIAFPPTRVL 1053 >gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1202 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 11/284 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 ++ + +A ++++ E K L + + + FLA MSHE+RTP+ Sbjct: 780 RVSERTAWLLRINRALNEEMLEHKETEKKLLQAQQAAD-AASRSMGEFLAYMSHEIRTPM 838 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+++G + ++ + P ++Y+ IH SG LL++IN+ILD S+I G+ +L Sbjct: 839 NSVIGLAGLLLETNLSP----EQRDYVQTIHSSGDALLSIINDILDFSKINEGKMKLELE 894 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 SL + I M+ +A EK +E+ +D + +V D ++Q+++NLL NAVKFT Sbjct: 895 PFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQILVNLLGNAVKFT 954 Query: 384 AIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V + V + S+ D G GI++ ++ + SF Q + G GLGL Sbjct: 955 ER-GMVSLEVKMGDEPGMLHFSVTDTGIGISKSDMKKLFHSFSQVDASTSRKYGGTGLGL 1013 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I++ ++ GG+ + S++ G + +V +D Sbjct: 1014 AISRMLVEQMGGRIWVESEMGSGSTFHFQI---KVEESSGDDAS 1054 >gi|319936551|ref|ZP_08010965.1| two-component hybrid sensor kinase/response regulator [Coprobacillus sp. 29_1] gi|319808349|gb|EFW04909.1| two-component hybrid sensor kinase/response regulator [Coprobacillus sp. 29_1] Length = 852 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 10/264 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + + Sbjct: 318 QRFFVMTKLQLQELEKARETAIEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHI--- 374 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N E K + I S +HLL LIN++LD+S+IE+G+ L+ AISL ++V II++Q Sbjct: 375 DNQEQVKNCLKKITLSSKHLLGLINDVLDMSKIESGKLSLTMEAISLKEVVEGIIIIMQP 434 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 + + K + I+ S +VW D + QV+LNLLSNA KFT GG + ++ Sbjct: 435 QVKAKKQKFGIHIEDISTENVWCDGVRLNQVLLNLLSNATKFTPDGGSIDFSLLEEESPK 494 Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +I +KD+G G+ + + S+ + +G GLG+ I + I+ G Sbjct: 495 GENYARIHIIVKDDGIGMTPAFLEKIYESYSRADGRRIHKTEGAGLGMAITKYIVDAMEG 554 Query: 455 QFLIRSKLREGVEVIAILPNTRVL 478 ++S+L +G E +L +VL Sbjct: 555 TIDVQSELGKGTEFHIVLDFEKVL 578 >gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 1050 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 10/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + +VA+ + ++ AE + AKS FLA +SHE+RTPL AI+G S ++ + Sbjct: 514 RDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESPL--- 570 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N E I+ G+ LL+LI +ILD+S+IEAG+ +L L + R + ++Q Sbjct: 571 -NPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLVQQS 629 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTS 397 A +K + + +I P L + + D +RQV++NLL NAVKFT G V + V Sbjct: 630 AHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQ-GVVELIVRGHFQAEE 688 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D G GI +I + F Q + G GLGL I+Q ++ GG Sbjct: 689 RYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGTLE 748 Query: 458 IRSKLREGVEVIAIL 472 + S L G + Sbjct: 749 VSSTLGVGTTFTLTI 763 >gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] Length = 500 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL I+++ Q+ Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H V + Sbjct: 367 VPEIEIKAILPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 481 Query: 463 REGVEVIAILPNTR 476 G LP + Sbjct: 482 GRGSRFTVTLPLEK 495 >gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 500 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL I+++ Q+ Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H V + Sbjct: 367 VPEIEIKAILPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 426 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 481 Query: 463 REGVEVIAILPNTR 476 G LP + Sbjct: 482 GRGSRFTVTLPLEK 495 >gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] Length = 254 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 3 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 61 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL I+++ Q+ Sbjct: 62 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVKN 120 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H V + Sbjct: 121 VPEIEIKAVLPDDDIYITTDATRLKQVICNFINNARKFTEE-GYIHFGFMVNPENDDSVC 179 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 180 LFVEDTGEGIPQECQKEIFDRFYKV----NTFKQGTGLGLSICKTIVEHLQGSISVVSEV 235 Query: 463 REGVEVIAILPNTR 476 G LP + Sbjct: 236 GRGSRFTVTLPLEK 249 >gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 990 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 12/272 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + +++ L + + ++ R E N AKSRFLA+MSHE+RT Sbjct: 296 LLNLVEDADLARNQLIETNMKLGESVRKTEEMAKSAR----EANEAKSRFLANMSHEIRT 351 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ++G S+++ ++ ++Y+ I SG++LL +IN+ILD S+IEA R EL Sbjct: 352 PMNGVIGMSDILLDTSLDI----EQRKYVETIISSGKNLLKIINDILDFSKIEANRLELD 407 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 +LID++ + +L A EK +E+ + P+L + D +RQ+++NL+SNA+K Sbjct: 408 HIDFNLIDLLEDVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLVSNAIK 467 Query: 382 FTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G V V Q ++ D G GI E ++ F Q G Sbjct: 468 FTHEGEVVLDAVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIRKYGGT 527 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GLGL I+ + G ++S++ G Sbjct: 528 GLGLSISSHLAEKMGSGITVQSRIGTGSVFRF 559 >gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] Length = 701 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 3/250 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + ++ + AE+ +LAKS FL+SMSHELR+PLNAILGF +++E E P Sbjct: 284 RDVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESE--SPP 341 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ KE I I ++G HLL LINEILDLS++E+G+ LS + L +++ EC M++ + Sbjct: 342 PTDSQKESIAQILQAGWHLLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQSMVEPQ 401 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 AQE+ I + + + AD ++Q+++NLL+NA+K+ + G + V ++ Sbjct: 402 AQERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESAPGRLR 461 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ISIKD+G G+ ++ + F + +E+G G+GL +++ ++ GG S L Sbjct: 462 ISIKDSGAGLTPEQLEQLFEPFNRLGQ-ENGSEEGTGVGLVVSKRLVELMGGTIGAESSL 520 Query: 463 REGVEVIAIL 472 G L Sbjct: 521 GAGSVFWFEL 530 >gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 870 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 3/306 (0%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 V A + I + + L ++ + +S + + I + Sbjct: 560 AVYADLWRTITAGGTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARK 619 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ + AE+ N AK+ FL+ MSHELRTPL A+LG++E++E GPL + + + Sbjct: 620 AAEDALVAAMQAAEDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPS-QHAD 678 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 ++ I SG+HLL++I+E+LD+SRIE G Y ++ L I +EC+ ML+ + K+I+ Sbjct: 679 FVAAISDSGRHLLSIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQ 738 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + ++ V D + +RQV++NLL NAVK+T GGR+ V + +G+ + + D G Sbjct: 739 LDLEEGGAMPLV-TDSRAVRQVLINLLGNAVKYTEAGGRISVGLTR-AGQTLRVVVADTG 796 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA ++ V F + +GVGLGL I + I+ G I+S+ G V Sbjct: 797 CGIATDKLAHVFEPFQRVDPLRADPARGVGLGLAICRRIVELLHGDIAIQSEPGRGTAVT 856 Query: 470 AILPNT 475 LP + Sbjct: 857 LTLPLS 862 >gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 892 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 7/253 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + S ++ AEE + K+ FLA++SHE+RTP+N I+G SE+++ + Sbjct: 496 EDITEKKKLWSELIAAKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKDPDL--- 552 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E YI I +S Q LL LIN+I+D+SRIEAG+ + S + +R+ + Sbjct: 553 SKEEQSLYIDLIDQSCQRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPL 612 Query: 343 AQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K + + S S + D + Q++ NLL NA+KFT G + + Sbjct: 613 AEQKGLRLSCTTGLSDSESVIETDSTKLTQILTNLLQNALKFTRE-GHIDFGYAR-NKNT 670 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D+G GI+ + F Q ++ +G GLGL I+Q+ + GG ++S Sbjct: 671 LEFYVADSGIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKS 730 Query: 461 KLREGVEVIAILP 473 +G E I LP Sbjct: 731 TEGKGSEFIFTLP 743 >gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] Length = 675 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 100/505 (19%), Positives = 191/505 (37%), Gaps = 45/505 (8%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75 I P+ + + F + + + V + A G ++ + Sbjct: 38 IRPSAWLVAIGAAVAGTF-ARLTLESAAGIRLPFYLAFPVVTVAAWYGGFWPGVVAIACY 96 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + + + + A + + V LL+ + L + Sbjct: 97 AALFVGLAALQI---SPPAQPILPTQLVVFALGTLLICVLCEQLRRARAGAERRARAETQ 153 Query: 136 YLTIYKSATLLIALSISAL------SNFMLPYAVFLSFFP--VVVALSTQAIMSMHVLDI 187 + + S+ +L +F + P ++ + + Sbjct: 154 QRVSQQRLLAALQASLISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQ-----------------------AEKDDL 224 + AG A T + + + + + + E+ Sbjct: 214 TEAGQQVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITERRQA 273 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 A R+ AE + K FLA++SHELRTPLNA+LG+++++ M P + Sbjct: 274 EARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MRPYDE 330 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T++ + I RS + ++LI+++LD+S I +G+ L + L D++ ++ A+ Sbjct: 331 ATFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAR 390 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I + + P + + D ++QV NLL+NAVKFT GG + V+V ++ + Sbjct: 391 QKQIAVDMECQP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASAEGLVA-T 448 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 ++D G GI +P + F Q ++ G+GLGL IA+ ++ H G+ S Sbjct: 449 VRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGTD 508 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G + LP LN P S Sbjct: 509 LGTTMAVTLP----LNAPPSSEQSS 529 >gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1548 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 10/256 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 I+ + +++ ++ AEE KS FLA+MSHE+RTP+NAI+G + + + Sbjct: 720 ALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTEL- 778 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + +Y+ I SGQHLL ++N+ILD S+IEAG+ + + L ++ ++ Sbjct: 779 ---DPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVS 835 Query: 341 LRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +A K +E + ++ V D + Q+++N +NAVKFT G + + V Sbjct: 836 EKAATKGLEFVLDVAANVPPVLRGDPLRLGQILINYANNAVKFT-EHGEIVIHVETLETG 894 Query: 400 G----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +++D G G+ + + + SF Q + G GLGL IA+ + GG Sbjct: 895 DTDVLLRFAVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGG 954 Query: 456 FLIRSKLREGVEVIAI 471 + S G Sbjct: 955 VGVDSVPGGGSTFWFT 970 >gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] Length = 2102 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 12/250 (4%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLASMSH+LRTPLN ILG++++++ E ++ + I RSG+ LL LIN+IL L Sbjct: 1641 FLASMSHDLRTPLNGILGYAQILKKE---KNITPPQRDGLQIIERSGEQLLLLINDILHL 1697 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IE+G+ EL + + D V+ + + ++ A+ KNI+ + L V DEK +RQ Sbjct: 1698 SKIESGKLELENNDFNFADFVKNVVSITRVWAENKNIDYRFESPAQLPYFVNGDEKRIRQ 1757 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++ NLLSNA+KFT GG V + T ++D G GI + I + F Sbjct: 1758 ILFNLLSNAIKFTDEGG-VTFRITHTPHPTKVLNHIFVFEVEDTGTGIPKDTIAKIFEPF 1816 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + A +G GLGL I ++ G + S L +G + + +P+ Sbjct: 1817 HQVRGSRHQA-EGTGLGLAICNRLVKLMDGSIQVESTLGKGSLFKLTIDMPVTNSELPQP 1875 Query: 485 NHESTQYKCY 494 E Y Sbjct: 1876 PQEERNIVGY 1885 >gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] Length = 863 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 10/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + N ++ + ++ E ++ A N AKS FLA+MSHE+RTPLN I Sbjct: 330 IQGNDELAEFTETLNRVMERNYQHNKELVEAKEDAISANKAKSAFLANMSHEIRTPLNGI 389 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E++ + + +E +GDI S LL L+N+ILDLS+IE+G LS Sbjct: 390 IGMAEILSQSQL----SANQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 445 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L + V + + ++ +A K+IE+ ID + ++ DE +RQV+ NLLSNA+KFT+ Sbjct: 446 LREAVYDSVSVILSKAISKDIELDINIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFTSK- 504 Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + + +T S+ D G GI ++ ++ F Q +I G GLGL Sbjct: 505 GTITTDIAYTPMSLGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 564 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I + ++ GG RS EG L Sbjct: 565 AICRQLVDLMGGYITARSVKGEGSTFTFCL 594 >gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] Length = 394 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 13/262 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ ++A E + AK+RFL +MSH++RTP+NAI+GFS+++ N E +EY+G Sbjct: 2 ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL---DNEEKVREYLGK 58 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SG L+ +I+++L+++RIE+G L A +L ++ +L+ Q K I Sbjct: 59 IKSSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSID 118 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISI-KDNG 409 + + D+ ++++ LN++SNA+K+T G +HVT+ T + +Y+ + +D G Sbjct: 119 TNVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTG 178 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+A +P + F + A ++ G GLGL I +S + G+ + SK +G + Sbjct: 179 IGMASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFT 238 Query: 470 AILPNTRVLN------FIPEDN 485 +P +PE Sbjct: 239 VEIPLELASEGDICKKELPEQT 260 >gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1611 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + ++ A NL+KS FLA+MSHELRTPLNAILGF++++ + Sbjct: 1134 ITQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGR---DTSLS 1190 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++E + I+RSG+HLL LI++ILDLS+IE G+ L + L ++ ML +A+ Sbjct: 1191 AYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAE 1250 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K I++ + D +L + D K +RQ+++NLL+NA+KFT G V + V + Sbjct: 1251 SKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQ-GTVTLRVNLSKIDQKAV 1309 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G GIA E+ + F Q A K QG GLGL I+Q ++ GG+ + Sbjct: 1310 IVKFIVEDTGVGIAADELDNLFQLFVQAE-AGKKINQGSGLGLAISQKLVQLMGGKIEVN 1368 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S L +G +P L+ Sbjct: 1369 SILNQGSIFSFEIPVELSLSS 1389 >gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] Length = 534 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ E + Sbjct: 290 IDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASMLVEE----DDK 345 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + YI + + + LL LI++ILDLS+IEAG + + +++ D + + +++ Sbjct: 346 KERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRGYEIKED 405 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + P ++ D+K + QV+ N ++NA+KFT+ G++ + + Sbjct: 406 KPVPVLLASNLPDY-RIYTDKKRLMQVVTNFINNALKFTSE-GQITLEYHFKEDTNEIEF 463 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + V F + + +G GLGL I +SI+ + GG + S++ Sbjct: 464 SVTDTGIGIAPDAVGQVFDRFVKL----NTFSKGTGLGLSICRSIIEHLGGTIGLESEVG 519 Query: 464 EGVEVIAILPNTR 476 G P Sbjct: 520 VGSRFWFTHPCAE 532 >gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 385 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 126/250 (50%), Gaps = 2/250 (0%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A R+ AE + AKS FLA MSHELR+PLNAI+GF+E+I +GP + Y EY Sbjct: 133 ADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLGP-TDPRYFEY 191 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 DI SG HLL LI++ILDLS+I AG+ L E + + ++ R + +E+ Sbjct: 192 AEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAANLSTAQLEL 251 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + + AD + Q+I+NL++NA+KFT GG + V T+ I + D G Sbjct: 252 VNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTD-AVLIKVSDTGI 310 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ E+ F Q + G GLGL I + + + HGG I S G V Sbjct: 311 GMTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVKGTGTTVTI 370 Query: 471 ILPNTRVLNF 480 LP R+ Sbjct: 371 HLPRARIATE 380 >gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1851 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 103/417 (24%), Positives = 169/417 (40%), Gaps = 35/417 (8%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + + IG V + +LV + G L E L + LL + + Sbjct: 1187 RFKAGETLIGTVAEEKRPILVENVPPGYLKIASGLGEAAPAHVIVLPVLFEGQLLGVIEL 1246 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL---AGMLATALSFFTYITYHLF 208 ++ F FL+ ++ S I ++ L + + Sbjct: 1247 ASFQPFAQIQKDFLNQIAEMIGTSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQK 1306 Query: 209 KSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 + + + L + EV + +E R+ EE KS FLA+MSH Sbjct: 1307 ALQASNAELEEKSERLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSH 1366 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1367 ELRTPLNSLLILAKLLADNADGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGK 1425 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLS Sbjct: 1426 MDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLS 1485 Query: 378 NAVKFTAIGG-RVHVT-------------------VGWTSGRGQYISIKDNGPGIAEGEI 417 NAVKFT G + + + S+ D G GIA ++ Sbjct: 1486 NAVKFTDSGAVELVIRPAGADVPHAIREQLLEHGALRDADADMIAFSVTDTGIGIAASKM 1545 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1546 RVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1602 >gi|332535478|ref|ZP_08411259.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332035088|gb|EGI71603.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 925 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 13/300 (4%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 LDI L + + + +++ ++ L AE++ ++ +AE Sbjct: 214 LDIGLGVVAKNINLLLQKVQTAMSENDAAQKELYKLQNGLEAEVQNRTIALEQATIKAER 273 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K+ FLA+MSHE+RTP+N ++G +++ + + I S LL++ Sbjct: 274 ASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTEL----DGAQHRLSTIIRESAFSLLSI 329 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 +++ILD S+IEAG+ + S+ D + E +L A+++ +++ I P + + Sbjct: 330 LDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELAIAPDIPINLTG 389 Query: 364 DEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415 D +RQV+ NL SNA+KFT+ G V ++V + DNG G+++ Sbjct: 390 DSVRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVVHNTTDHFTLRFCVTDNGKGMSQA 449 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + F Q +I G GLGL I +S+ G + S G E LP + Sbjct: 450 QLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVTSHTGIGSEFTVELPFS 509 >gi|323694471|ref|ZP_08108641.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501459|gb|EGB17351.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 854 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 10/278 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L ++ A + + ++ R+ A E N AKS FLA+MSH++R Sbjct: 300 RMFMTLLSCASVLIILTAIFLRYFSITRSQMNELEKARQAALEANKAKSEFLANMSHDIR 359 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI+G + + + + + + I S +HLL LIN++LD+S+IE+G+ L Sbjct: 360 TPMNAIVGMTAIATAHI---DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTL 416 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + ISL ++V + ++Q + + K ++ + VW D + QV+LNLLSNA Sbjct: 417 TTEQISLKEVVEGIVNIMQPQVKTKKQTFDIHVENIFTENVWCDGIRLNQVLLNLLSNAT 476 Query: 381 KFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 K+T GG + +++ +I+++DNG G++ + + S+ + Sbjct: 477 KYTPEGGSIQLSLSEEKSPKGENYVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHK 536 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLG+ I + I+ G I+S+ +G E + Sbjct: 537 TEGAGLGMAITKYIVDAMEGTIEIQSEPDKGSEFLLTF 574 >gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 2099 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 197/490 (40%), Gaps = 29/490 (5%) Query: 14 LLISPTGDHLGLEYPSKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNP 70 + T + + K + R L + +L + L L+ A+ G + + Sbjct: 1179 DNLRLTTERNTEQDWLKTNLARFTNMLQGQRDLTLVGKMLLSELAPLVGAHQGVIYQVDA 1238 Query: 71 --IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128 P SL+++ + ++ +G+ +LV + + + Sbjct: 1239 DESQPFLSLLSVYAQGVEAAHPPRLDFGQGLVGQCASDARRILVTDLPENVVPISSGVFT 1298 Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 + L ++ + + +++ F FL + + +I + + Sbjct: 1299 TLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLDQLTTSIGIVLNSIEATMQTEGL 1358 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244 L A + L ++N ++ + ++ E+E ++ R+ EE Sbjct: 1359 LKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNVEVEAKNQEIEQARRALEEKATE 1417 Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FLA+MSHELRTPLN+IL + + G L+ E+ IH +G L Sbjct: 1418 LALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLS-AKQVEFAKTIHGAGTDL 1476 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 LNLI++ILDLS+IE+G + I + +++ + A+ +N+ ++ ++ Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRNLSFAVEVGADVTKS 1536 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407 + D K ++Q++ NLLSNA KFTA GG V + V + + D Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASVTSGWSPEHPSLRHAPSVIAFEVVD 1595 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + +F Q + G GLGL I++ + GG+ +RS G Sbjct: 1596 TGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSAPGVGST 1655 Query: 468 VIAILPNTRV 477 + LP T V Sbjct: 1656 FVLYLPLTYV 1665 >gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] Length = 623 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 23/346 (6%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH---- 206 + S L V + + I+ + L ++ Sbjct: 276 VHFYSTAELQEMVLRQTISLFEFSTILLIILFLFVSYLLFIVIIRPCYLLVDYVRRCGEG 335 Query: 207 -----------LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 S V+I + E + L+A + + K+A N AK+ FLA Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQSQELEYAWKKALVANQAKTHFLAK 395 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHEL+TPLNAI G+ ++++L +N I I S LL ++E+LD S IE Sbjct: 396 VSHELKTPLNAIKGYIQLLKLSI----DNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIE 451 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILN 374 G+ +L I L + + +K+++ ID + SV + DE ++Q+I+N Sbjct: 452 DGKVKLEIDTIDLFQTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIIN 511 Query: 375 LLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 L+SNA+KFT G V + + + Y I +KD G GIAE ++ ++ SF Q + +I Sbjct: 512 LMSNALKFTEHGKIEVSFDLDYQTETEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSI 571 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I++ + GG ++ S++ G LP +++ Sbjct: 572 SRQFGGTGLGLSISKRLAEVMGGNLIVESQVNVGSTFTLFLPLSKI 617 >gi|124266342|ref|YP_001020346.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124259117|gb|ABM94111.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 609 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 94/434 (21%), Positives = 174/434 (40%), Gaps = 13/434 (2%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG--EVYVWRIWL 110 L +++ I + W ++ V+ L ++ ++ + W+ Sbjct: 44 LLGAMVLTMIYWPVAPSRELIAWCVLFGLVWVLRLVTLRRYAHAGWAAASSQAARWQRLW 103 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 G +A G CW L + + T + L A F Sbjct: 104 NAGAMASGACWGLAAWMFYEHGRAFHQTTLLLIIYSFCVGSITLMA-SQHRAFFAFISLC 162 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 V + ++ LAG+L+ T + ++ + + + + L +L+ Sbjct: 163 FVPTILRIATLGSTDNLLLAGVLSLVFLMTTILGRAYRRTFDRAIELKVRTEMLAVQLQT 222 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 K+ +DE ++ AE N AK++F A+ SH+LR PL+A+ F+E + ++ G +E Sbjct: 223 EKAAADEAKRAAETANRAKTQFFAAASHDLRQPLHAMGLFAEALRSKSRG---DEEVTHL 279 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I+ S L L E+LD+++I+ G E +L ++ + + + A EK + + Sbjct: 280 VNSINSSVDALEGLFGELLDITKIDTGGVEPQPRHFALRELFQRLKLQYEPTAFEKGLSL 339 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + + V+ D + +++ NLLSNA+++T GG V V+ G + + D G Sbjct: 340 RFRGAHHV--VYGDPVLVDRIVRNLLSNAIRYTVDGG-VLVSARRR-GDEVLLQVWDTGV 395 Query: 411 GIAEGEIPTVLTSFGQGSIAIK---SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 GIA E V F Q +G+GLGL I Q + G + S G Sbjct: 396 GIAPTEQQRVFDEFYQVQANAPLGLHQPKGLGLGLSIVQRLARLMGAPLHLASVPGRGSV 455 Query: 468 VIAILPNTRVLNFI 481 +P +V Sbjct: 456 FTLTVPPGKVQRSQ 469 >gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 494 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 111/412 (26%), Positives = 187/412 (45%), Gaps = 18/412 (4%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + L + + + ++ +++++ + Sbjct: 61 SRLTLARAHLDAAMRRLRGQSRVAPAPLPAESFAALHESVGDVVLLHDRTGAVLSIAGNR 120 Query: 154 LSNFMLPYAVFLS---FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 S F LP A + F V VA + ++ S A + + + + Sbjct: 121 QSLFGLPAADLMGRGFFEHVHVADRPIFLKAIGEASFSDAPITVALRLRASSLDRGDYAE 180 Query: 211 NVKI-LSCQAEKDDLIAELEVAKSL----------SDETRKRAEEENLAKSRFLASMSHE 259 V + L +A + + A ++ DE +L+K FLA++SHE Sbjct: 181 PVFLWLDMRARRCGKHSPERSAVAIFRNVTDAHWRQDELDSAGTAADLSKDHFLANVSHE 240 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAI+GFSE++ P + +EY IHRSGQHLL+++N ILDLS+I +G + Sbjct: 241 LRTPLNAIIGFSEILGDADQAPRDPAKQREYAAIIHRSGQHLLSVVNSILDLSKIHSGSF 300 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +LS S + +V C M++L AQ+++IE+ + L + D++ +Q+++NLLSNA Sbjct: 301 DLSPSHFGVAPLVEVCCDMVKLEAQDRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNA 360 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT G V ++V I++ D+G GI E ++ + F Q A+ +G G Sbjct: 361 VKFTPAHGEVSISVSI-EDETLLIAVADSGVGINEQDLARLGNPFFQARGALDRPFEGTG 419 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHES 488 LGL I ++ HGG + S+ +G V+ LP V P E+ Sbjct: 420 LGLSIVSGLVGLHGGSIAVASEPDQGTCVLVRLPVDCRAAVDKARPSAEIET 471 >gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365] gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] Length = 1035 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG ++L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 537 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 112/410 (27%), Positives = 180/410 (43%), Gaps = 4/410 (0%) Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLT 125 + + I + + +L + +S + E WRI L++ + Sbjct: 122 WFGDSIAVNFPVHYRHAVGRDLVGMVSLTSSSAVLAERLQWRIILIIVAAVLKTAI---- 177 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L + L A+ + + ++ + L Sbjct: 178 LWVIFDRLGRSILARPLTQLTRAVREAGWGRLHPVEFDAPTAISAAGTEIEHLRIAYNDL 237 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 +L+ + + + ++ E +A ++ A+ + AE Sbjct: 238 VAALSRGQREIATLNRDLETRVAARTSELQERTVELSAALARVDQARRQTAAALDAAERA 297 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 AKS FLA +SHELRTPLN+ILGFSE++ + + + E EY DIH SG HLL LI Sbjct: 298 GRAKSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHLLTLI 357 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ILDLS+IEAG+ E+ + I R + +++ +A KN+ I ++DPS+ + AD Sbjct: 358 NDILDLSKIEAGQMEIHSEWVDPAAITRAVVELMREQATRKNLTIECRLDPSIGPLRADP 417 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + RQ+++NLLSNAVKFT G V + T G I++ D G G+ ++ L FG Sbjct: 418 RRFRQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARALEPFG 477 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q I ++QG GLGLP+ + HGG+ + S G P Sbjct: 478 QIDSPITRSQQGTGLGLPLVSQMARLHGGRLSMDSSPGVGTRATLWFPPE 527 >gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1364 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 14/339 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++ + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 + GG+ + S G E ++ + + P+ E Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEK--SSPPQAQRE 881 >gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] Length = 499 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI+++LDLS+IE+ + + + SL ++ + Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKE-QTMKP 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H V + Sbjct: 367 ISEIEIRASLPNEDVYINTDATRLKQVISNFINNARKFTEK-GYIHFGYAVDSVDASSVH 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S+ Sbjct: 426 VFVEDTGSGIPKECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDIFVESET 481 Query: 463 REGVEVIAILPNTR 476 +G LP R Sbjct: 482 GKGSRFTVTLPFER 495 >gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus subtilis subsp. spizizenii str. W23] Length = 611 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + + ++ + ++ Sbjct: 371 EKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAP--RFLMVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ + I ++ + I ++ +E+++E + + V Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRNLYVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ N++SNA+K++ GG V ++ YIS+KD G GI + ++ V Sbjct: 488 IDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ HGG S +G + LP Sbjct: 548 DRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWADSIEGKGTTITFTLP 599 >gi|313623104|gb|EFR93377.1| sensor histidine kinase ResE [Listeria innocua FSL J1-023] Length = 596 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++R+ I + A+E +E+ +++ D M QV++NL+ NA++ T Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ H G+ + S L +G + I LP + Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596 >gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 556 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 4/355 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 + LV + + SAL++ + LS + +L ++ Sbjct: 45 GVGGLVSLIGDDSPIGLPLTEVIPELFGNESALADILNGQLDRLSLPLINRSLPDGSVRY 104 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + +L + T + + +S + L Q + + + + + + R Sbjct: 105 LDLLTVPHTDDDGTIVGLLQIVVDTTNRSMTEQLLTQRRNELHLLKDRIQRQNVELARIN 164 Query: 242 A--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 A K FLASMSHE+RTPL AILG +V+ + +GPL+ E I I + GQ Sbjct: 165 AGLLRVTKLKDEFLASMSHEVRTPLTAILGLVDVLRAQLVGPLS-EEQMGAINGIKQGGQ 223 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 HLL LIN+ LD+++IEAGR EL + +S+ DI + M+ A+ +++ +DP++ Sbjct: 224 HLLALINDYLDIAKIEAGRLELDLTPVSVHDICQSLRPMIADMAKRAGLQLVYDLDPTVQ 283 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIP 418 + AD + +RQ+++NLLSNA+KFT GG+V + V + ++ D G GI+ + Sbjct: 284 VMLADARRLRQILINLLSNAIKFTPAGGKVGLEVRGDAERGAVRFTVWDTGIGISAEDAA 343 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q + G GLGL + + HGG + S++ G LP Sbjct: 344 RLFEPFQQIESERQKEVTGSGLGLALVAKLARLHGGSVSLESEVGVGSRFHVTLP 398 >gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 2654 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 10/313 (3%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 S + + I + + H+ + + Sbjct: 1756 LASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHAMGHVERDEQGKATDMYGITM 1815 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I ++A + ++ A+ N AKS FLA+MSHE+RTP+NAI+G S + + Sbjct: 1816 DITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDL---- 1871 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 N + YI + RS + LL +IN+ILD S+IEAG+ + L D++ ++ L+A Sbjct: 1872 NGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKA 1931 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 +EK +E+ + P L + + D + QV++NL +NAVKFT G V V V Sbjct: 1932 EEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFT-AHGDVVVKVQQLERTTER 1990 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Y S+KD+G G+ + + SF Q + G GLGL I++ ++ G+ + Sbjct: 1991 IKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDV 2050 Query: 459 RSKLREGVEVIAI 471 S +G + Sbjct: 2051 DSVPEQGSDFHFS 2063 >gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 505 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 2/275 (0%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + + D I E ++A+ +E + E + K +FL +++H Sbjct: 232 RLIFWHDVVLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELELLDNIKDQFLTNLTH 291 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL +I GF+E++ + MGP+ N+ K I + R+ + L +L+ +L +S Sbjct: 292 ELRTPLISIKGFTELMLEDHMGPI-NDAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKN 350 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + + +SL I E + +K + I + I L ++ D+ ++++I +LL N Sbjct: 351 IKYNMDVLSLTKITEEILETFTAPILKKGLTIERNIQTDLPTILGDKDHLKRMINHLLDN 410 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GG++ ++ I+I+D G GI E +P + + F Q + + G Sbjct: 411 AIKFTPEGGKIGISA-LHDSESVIINIEDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGT 469 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G+GL I + I+ H G + SK+ EG + LP Sbjct: 470 GVGLHICKKIIEAHKGSLSVSSKIGEGTIISVKLP 504 >gi|16801127|ref|NP_471395.1| hypothetical protein lin2061 [Listeria innocua Clip11262] gi|16414562|emb|CAC97291.1| resE [Listeria innocua Clip11262] Length = 596 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++R+ I + A+E +E+ +++ D M QV++NL+ NA++ T Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ H G+ + S L +G + I LP + Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596 >gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1004 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS FL+ MSHE+RTPLNAI+G+ E+ + E +Y+ + LL++I Sbjct: 626 SETKSSFLSRMSHEMRTPLNAIIGYLEL---GKKNADDTEKLWDYMAKSDIAAHQLLSII 682 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWAD 364 N++LD++ IE+G+ L + L + + E M + +A K ++ +D + D Sbjct: 683 NDVLDMASIESGKLHLEKVQFELTEEINEIREMFESQAWHKKLDFQVLMDSSEKIYIMGD 742 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQY--ISIKDNGPGIAEGEIPTV 420 + Q+++NLLSNAVKFT GG+V ++V T+ Y + D G G++E + ++ Sbjct: 743 PLRLNQILINLLSNAVKFTPAGGKVTLSVKKTALQEGHVYYCFEVTDTGIGMSEEYLDSL 802 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV--L 478 F Q +I G GLG+ I ++++ G ++S EG LP + + Sbjct: 803 FDPFVQQDASIARKYGGSGLGMSITKNLVTMKQGTISVKSTPGEGTVFTVNLPFQLIQQV 862 Query: 479 NFIPEDNHEST 489 IPE +T Sbjct: 863 EDIPEKESWNT 873 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 8/309 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + +A ++A + + Y + ++ E+ + Sbjct: 169 IEFRYLRPDGRICWVIAQVVAETDPSGSLLGYVGTQVDITRRMVVEERL------RQQSA 222 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 L +E + K +FLA+MSHELRTPL I+GFSE + G L + + + Sbjct: 223 LLEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQR-AVQH 281 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + +GQHLL LIN+ILDL+RI AG +L + + D E I +L Q K + Sbjct: 282 VFDNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYT 341 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGI 412 + S+ AD +RQ+++NLLSNA KFT GG + + + + + + I D+G GI Sbjct: 342 ACEAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGI 401 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A + + F Q + + G GLGL + + ++ HGG+ + S++ EG L Sbjct: 402 AANQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFL 461 Query: 473 PNTRVLNFI 481 P L + Sbjct: 462 PQHSPLPIL 470 >gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] Length = 1586 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 14/258 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + AE+ AKS FLA+ SHE+RTPLNAILG + ++ E++ E+ + Sbjct: 825 EQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL ++N++LDLS+IEA L + L + + E + +A+ KN++ Sbjct: 881 DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFK 940 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402 ++ L V AD +RQ++ NLLSNA+KFT++ G + + Sbjct: 941 LEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRAEIIDKFIWKGAEKNIVR 999 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 SI D G GI+E + F Q + G GLGL I + G+ + S+ Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGKIGVESRE 1059 Query: 463 REGVEVIAILPNTRVLNF 480 +G +P + + Sbjct: 1060 GQGSTFWTEMPLQTLSDE 1077 >gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 389 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 11/253 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE AKS FLA++SHELRTPLN ++G SE+++ + N Y I LL Sbjct: 31 EEAARAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQTGYADSIRVCADTLL 86 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ + E ISL + + E + L E+ ++ ++++ + V Sbjct: 87 SIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEMLV 146 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEI 417 AD + Q+++NLLSN+ KFT G V V ++ S+ D G GI + + Sbjct: 147 MADPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQK 205 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + + G GLGL I ++++ N G + S+ +G V L + Sbjct: 206 QKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSLRFKK 265 Query: 477 VLNFIPEDNHEST 489 V + T Sbjct: 266 VPKAQAGAQQQRT 278 >gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC 29799] gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC 29799] Length = 821 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 144/275 (52%), Gaps = 10/275 (3%) Query: 221 KDDLIAELEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +D I + + + + E + A++ AKS F +SMSH++RTPLNAI+GFS++ + + Sbjct: 416 RDVDIEKRQQLQHTIILQEALEAAKKSTKAKSDFFSSMSHDMRTPLNAIIGFSQLAQKNS 475 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ ++Y+ I SG+ LL LIN+IL+LS++EAG+ L+ +L V E + Sbjct: 476 ---DDSGKVRDYMQKIEFSGKQLLALINDILELSKMEAGKNALNNQRFNLKKYVEEAADI 532 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395 + +A+ + +D V DE + Q++ NLLSN++K++ G +H+ + Sbjct: 533 FREQAEHQGKRFTADLDMHNEIVVGDEFKIGQILNNLLSNSLKYSNPGAEIHLEIRQFDF 592 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I ++D G G++ + + + + + +A G GLG+PI +S++ G+ Sbjct: 593 RRHSKYQIVVEDTGIGMSRQFLEHLFDPYSRETCFTSAATVGTGLGMPIVKSLVQQMSGE 652 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S L +G + LP V I ED+ E + Sbjct: 653 ISVESTLGKGSKFTVTLPLEAV--HIEEDSQEKKE 685 >gi|148284508|ref|YP_001248598.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong] gi|146739947|emb|CAM79973.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong] Length = 515 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 15/311 (4%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 ++F + + Q + ++ L +L +L FF I + Sbjct: 216 AVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIKSSISNVQ----------- 264 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I A ++ R++AE+EN+AK++FLA++SHELRTPL+AI+G +E+I + + Sbjct: 265 KIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIILSNSHCKI 324 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y YI DIH SG+HLL +IN+ILD S+ A + + A+ L + + ++ + Sbjct: 325 N---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASSLRLMYTK 381 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401 A++ I++ K P + AD K ++Q + NLLSN++KFT G + + + Sbjct: 382 AKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISMNELKSLV 441 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 YI + D G GIAE +IP L+SF Q + + + +G GLGLP+ + ++ G F I S Sbjct: 442 YIKVIDTGIGIAEQDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEGDFEITSN 501 Query: 462 LREGVEVIAIL 472 + +G V Sbjct: 502 IGQGTTVTITF 512 >gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 576 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 LIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569 >gi|323485480|ref|ZP_08090826.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323401128|gb|EGA93480.1| sensor protein [Clostridium symbiosum WAL-14163] Length = 854 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 10/278 (3%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L ++ A + + ++ R+ A E N AKS FLA+MSH++R Sbjct: 300 RMFMTLLSCASVLIILTAIFLRYFSITRSQMNELEKARQAALEANKAKSEFLANMSHDIR 359 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+NAI+G + + + + + + I S +HLL LIN++LD+S+IE+G+ L Sbjct: 360 TPMNAIVGMTAIATAHI---DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTL 416 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + ISL ++V + ++Q + + K ++ + VW D + QV+LNLLSNA Sbjct: 417 TTEQISLKEVVEGIVNIMQPQVKTKKQTFDIHVENIFTENVWCDGIRLNQVLLNLLSNAT 476 Query: 381 KFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 K+T GG + +++ +I+++DNG G++ + + S+ + Sbjct: 477 KYTPEGGSIQLSLSEEKSPKGENYVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHK 536 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLG+ I + I+ G I+S+ +G E + Sbjct: 537 TEGAGLGMAITKYIVDAMEGTIEIQSEPDKGSEFLLTF 574 >gi|313618121|gb|EFR90221.1| sensor histidine kinase ResE [Listeria innocua FSL S4-378] Length = 596 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 12/273 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSIVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG ++ + L Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++R+ I + A+E +E+ +++ D M QV++NL+ NA++ T Sbjct: 444 APLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 AGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I ++I+ H G+ + S L +G + I LP + Sbjct: 564 IVKNIVEAHNGKISVESVLGKGSDFIITLPLYK 596 >gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM 15053] gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM 15053] Length = 976 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 94/322 (29%), Positives = 157/322 (48%), Gaps = 20/322 (6%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 ++ Q ++S ++++ M+ F I +F V ++ A I + + Sbjct: 524 TIANQNMISSGTGEMTIIEMIYANPLMFVVICGVVFLLIVILILVMARYR--IHAVRMQN 581 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 SL+ +AE+EN AK FL+ MSHE+RTP+NAI+G S++ M ET + + Sbjct: 582 SLA-----KAEKENRAKGEFLSRMSHEIRTPMNAIVGLSDL---TCMMDDVPETVRVNLS 633 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I S ++LL LI++ILD+SRIE + S+ ++ E M+ A + +E Sbjct: 634 KIRSSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNELESMMTAEAGRRELEFKL 693 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDN 408 + + D ++QV++NL+SNA KFT+ GGR+ V V T + DN Sbjct: 694 DLRIKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTETEASAEEAVFCFRVADN 753 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+E + + SF Q QG GLGL I+++I+ GG+ ++S++ +G E Sbjct: 754 GIGISEKDQERIFESFEQVGTNYS-KSQGTGLGLAISKNIVELMGGKLELKSEIGKGSEF 812 Query: 469 IAI--LP---NTRVLNFIPEDN 485 P + V + P + Sbjct: 813 YFTAAFPTAASEEVHDESPAVD 834 >gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 586 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 6/236 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E KS F A++SHELRTPL I GF E ++ L+ + K + I + Sbjct: 357 RKLEAL---KSEFAANVSHELRTPLTLISGFVETLQS--WESLDEKDRKMALNIIELETE 411 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + + + ++ E M+ A +KNI++ I+ ++ Sbjct: 412 RLKRLINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVH 471 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +++ + +Q+++NL+ NA+K+T GG++ V+ I + DNG GI + + Sbjct: 472 TLFGNSDWFKQMLVNLIENAIKYTPTGGQIKVSAK-NEQNEISIMVMDNGIGIPKEDCER 530 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + I+ GG + SKL +G LP+ Sbjct: 531 IFERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLPSK 586 >gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 935 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 24/313 (7%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + I+LA + ++ F + + +L E + + Sbjct: 247 RYQAIQIALAVVTVLSVLTFAVMVAKQILAGSALLQAMVED-------------LRQAKT 293 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A+ N AKS FLA+MSHE+RTP+N I+G + ++ + + + S + Sbjct: 294 GADAANQAKSEFLATMSHEIRTPMNGIIGMTSLLLDTRL----ERDQAHFANTVRVSAES 349 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL +IN+ILD S++EAG+ E E++ L+ ++ + +L R ++KN+++ I P+ Sbjct: 350 LLTIINDILDFSKMEAGKLEFEETSFELVPLIEGVVDILGPRLRDKNLDLSCFIPPAAHG 409 Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415 V D +RQV+LNL NAVKFT GG V + V +I D G GI E Sbjct: 410 VFRGDAGRLRQVLLNLAGNAVKFTNQGG-VVLEVMVDDSDPARALLRFTITDTGIGIPEA 468 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + G GLGL I + I+ GG S +G +P Sbjct: 469 AKGKLFGTFTQAEASTARRFGGSGLGLAICKRIVTMMGGDIGFDSSEGKGSTFWFQVPLP 528 Query: 476 RVLNFIPEDNHES 488 R + IP D S Sbjct: 529 RT-DEIPADPAPS 540 >gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463] Length = 619 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + E + E +++ + ++ +IN+ Sbjct: 377 SQRQFISNVSHELRTPLTSLQAYIEALNEEAW--KDPEIAPKFLEVAQQETSRMIRMIND 434 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + +K I +++ Sbjct: 435 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 494 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 495 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 553 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 554 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYETMTEE 613 >gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 767 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E +++AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + E K Sbjct: 530 EKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VTCDDPEEKK 585 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EYI I + + LL LIN+ILDLS+IE+G E + +L + E + +Q + N+ Sbjct: 586 EYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNV 645 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E+ S V D ++QV +N L+NAVK T G + + G I ++D Sbjct: 646 ELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCT-KSGYIKMGYGIERKG-LRIYVEDT 703 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + V T F + QG GLGL I+++I+ GG+ SKL G Sbjct: 704 GIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTF 759 Query: 469 IAILPNTR 476 A LP Sbjct: 760 WAWLPLRP 767 >gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CMR15] Length = 676 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 97/499 (19%), Positives = 185/499 (37%), Gaps = 40/499 (8%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75 I P+ + + F ++ + ++ V + A G ++ Sbjct: 38 IRPSAWLVAIGAAVAGTF-ARLMLESAAGIRLPFYLVFPVVTVAAWYGGFWPGVVAVA-- 94 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 L L + + V + LL+ + L + Sbjct: 95 CYAALFAGLVALQISPPPAQPILPTQLVVLALGTLLICVLCEQLRRARAGAERRARAETQ 154 Query: 136 YLTIYKSATLLIALSISAL-----------SNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 + + S +L + + V + + Sbjct: 155 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLPPHELLGRTVREVFGRRAASRL 214 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVK----ILSCQAEKDDLI---------AELEVA 231 + + + + L V ++ + + ++I E A Sbjct: 215 TEAGQRVIATGLPTRVEFAFRRLHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQA 274 Query: 232 KS-------LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ R+ AE + K FLA++SHELRTPLNA+LG+++++ M P + Sbjct: 275 EARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MRPYDE 331 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I RS + ++LI+++LD+S I +G+ L + L D++ ++ A+ Sbjct: 332 AMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAR 391 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I + + P + + D ++QV NLL+NAVKFT GG V +TV + + Sbjct: 392 QKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVA-T 449 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 ++D G GI +P V F Q ++ G+GLGL IA+ ++ H G+ S Sbjct: 450 VRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGAD 509 Query: 464 EGVEVIAILPNTRVLNFIP 482 G + LP + P Sbjct: 510 LGTTMAVTLPLHAPPSNEP 528 >gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1410 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 30/291 (10%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET--RKRAEEENLAKSRF 252 L F++ T V + + +ELE K+ D R A AKS F Sbjct: 619 GILCFWSQQTKTEPFKAVDRELLKLMAQWIGSELERQKTAQDLAKVRDEALAATKAKSEF 678 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTP+NA++G + ++ + T ++Y+ I S LL+LIN+ILD S Sbjct: 679 LATMSHEIRTPMNAVIGMTGLLLDTRLTS----TQQDYVETIRSSSDALLSLINDILDFS 734 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 +IE+G+ EL + L + E + +L +A KNIE+ IDP V D +RQ+ Sbjct: 735 KIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSKVIGDGARLRQI 794 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----------------------ISIKDNG 409 ++NLLSNAVKFT G V +++ S +++D G Sbjct: 795 LVNLLSNAVKFTET-GEVVISLKAVSLEPIVSEENLDENSTETTTQPNRYQIQFAVRDTG 853 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 GI + + SF Q + G GLGL I++ + GGQ + S Sbjct: 854 IGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVES 904 >gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 982 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R +AEE + KS FLA+MSHE+RTPLN+I+GFS+++ E + P E +E+ I Sbjct: 752 RARLKAEESDQLKSAFLANMSHEIRTPLNSIVGFSDILVTEDLSP---EDKREFGKIIRS 808 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + + LL LIN+ILDLS++E+G E +E+ + +++ E Q R +E ++ Sbjct: 809 NNEQLLTLINDILDLSKLESGCVEFTETDFGVEELLGEIFSSYQPRFRELPTKLVYVPKG 868 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D + + +V+ N ++NA+K+T+ G + + +G ++ D G G+ Sbjct: 869 KSIRLHQDRQRLIEVLTNFVNNAIKYTSE-GSITLDYEKV-DQGVKFTVTDTGVGMPPEA 926 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + F + S +G GLGL I + + G+ + S L +G L Sbjct: 927 LDKIFNRFEKLG----SMVKGTGLGLSICKMLADRMHGKIGVDSTLGKGSTFWFWL 978 >gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1242 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 148/333 (44%), Gaps = 8/333 (2%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 +L + + + L + + V + + + + M A + Sbjct: 767 LVLSDIMMPGIDGLQLLRELRSASSTREVPIILLSARAGEESRVEGLEMGADDYLIKPFS 826 Query: 204 TYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 L L + KD L + E + + R AE N K FL +SHE+RT Sbjct: 827 ARELLARVRTNLELSRLRKDALAQQAERIREQA--ARVEAEAANRMKDEFLQVLSHEIRT 884 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN +LG+ +++ G L++ + I R+ L++++LD+S I G+ L Sbjct: 885 PLNGMLGWVKMLRQ---GKLDSSATTRALETIERNANAQAKLVDDLLDVSCIIRGQLRLE 941 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + +SLI ++ E I L+ +A+ K+I I +D +SSV D ++QV NLLSNA+KF Sbjct: 942 KRPVSLISVITEAIETLKPQAEAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKF 1001 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T GG+V V++ + +KD G GI +P + F Q + G+GLGL Sbjct: 1002 TPSGGQVEVSLQAVGTD-ALLQVKDTGNGIKADFLPYIFERFRQADASTTRTYGGLGLGL 1060 Query: 443 PIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 I + ++ HGG S L G LP Sbjct: 1061 AIVRHLVEMHGGTVEADSPGLGLGATFGVRLPL 1093 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 7/270 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTP 263 + + E + + + + +E RK+A+ E + K+ F ++SHE RTP Sbjct: 388 NRRLDESYKSFYELLAGQVSVSLRNAQAYEEERKKAQALAELDRTKTAFFNNVSHEFRTP 447 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L ILG E + L +E +E + +HR+ LL L+N +LD SRIEA R + Sbjct: 448 LTLILGPLEDVLNNQNARLTSEE-REQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVY 506 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 I L E + + + + + P +V+ D + +++LNLLSNA KFT Sbjct: 507 EPIDLAVFTTELASVFRSTIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFT 566 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 I G++ V++ W + + ++D G GI E+P + F + +G G+GL Sbjct: 567 FI-GQISVSLRWYTE-YVELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLS 624 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + Q ++ HGG + SK+ +G I +LP Sbjct: 625 LVQDLIRLHGGSIRVSSKVNQGSSFIVLLP 654 >gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] Length = 850 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N KS FLA+MSHE+RTP+N I+G S +++ M + KEYI ++ S LL+LI Sbjct: 244 NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----PKDQKEYINMLNISSLSLLDLI 299 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 N+ILD S+IEAGR EL ++++L ++ +E + ++A EK+I ID + + D Sbjct: 300 NDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGD 359 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTV 420 +RQV+ NL+SNA+KFT G VH+ + + D+G G++ V Sbjct: 360 ATQLRQVLNNLVSNAIKFTHT-GYVHLHTQLETETDTETTIRFEVIDSGIGVSVDMHDAV 418 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-VLN 479 F Q + G GLGL I + I+ GG+ I S++ +G + + VL Sbjct: 419 FDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKINSEVGKGSTFYFTITFEKNVLV 478 Query: 480 FIPEDNHES 488 ++ ++ Sbjct: 479 SASLEDSKA 487 >gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] Length = 568 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 9/224 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S+F+A++SHEL+TPL +I GF+E ++ + T +++ I + + L NLIN+I Sbjct: 343 RSQFVANVSHELKTPLTSIKGFAETLK----FVEDLPTRNKFLDIIDKEAERLTNLINDI 398 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS IE +++ E + ++ + I M+ + K IEI + + + D Sbjct: 399 LILSNIENN-HKMKEEEFNPAKVIEDVINMVTPQMNSKQIEINFSSNGTN-ELNGDRDKF 456 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+ILNL+ NA+K++ + + + YI ++DNG GI + ++P + F + Sbjct: 457 FQMILNLVENAIKYSNDKTLISIRT-YDINDYTYIEVEDNGIGIPKEDLPRIFERFYRVD 515 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + A+ G GLGL I + I G+ ++S L +G + L Sbjct: 516 KS--RAKGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFTIKL 557 >gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 675 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/435 (20%), Positives = 159/435 (36%), Gaps = 14/435 (3%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + L L ++ + + L + E Sbjct: 94 VCYAALFAGLVALQISPLAQPILPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS----ATLLIALSISALSNFMLP 160 + +L + +T + ++ + Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + + ++ L T L + + I E Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAIDI----TE 269 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 A R+ AE + K FLA++SHELRTPLNA+LG+++++ M Sbjct: 270 HRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 326 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P + ++ + I RS + ++LI+++LD+S I +G+ L + L D++ ++ Sbjct: 327 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 386 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K I I + P + + D ++QV NLL+NAVKFT GG + V V + Sbjct: 387 PMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGL 445 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G GI +P V F Q ++ G+GLGL IA+ ++ H G+ S Sbjct: 446 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAAS 504 Query: 461 K-LREGVEVIAILPN 474 G + LP Sbjct: 505 NGANLGTTMAVTLPL 519 >gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199] gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199] Length = 727 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 142/256 (55%), Gaps = 1/256 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+EL+ + + ++A+ N AK FLA+MSHELRTPLNAI+GF+E+I+ + N+ Sbjct: 463 ISELKRREDALVKAVEQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQI-ASNS 521 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + EY G IH SG HLL +IN++LD+SRIEAGR L E L ++ EC M++ +A+ Sbjct: 522 DVQGEYAGYIHESGAHLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAE 581 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + D + +Q+++NLLSNAVKFT GG V +T +G + Sbjct: 582 ADGLRLAMATVDPGLGIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMV 641 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G G+ + + F Q G GLGL I ++++ HGG + S + E Sbjct: 642 VRDTGIGVEANRVVELFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHE 701 Query: 465 GVEVIAILPNTRVLNF 480 G V L + R++ Sbjct: 702 GSTVTITLASDRLIEA 717 >gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] Length = 1301 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 11/263 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + RA+ + AK+ FL+ MSHE+RTPLNAI+G + + + + E + + S Sbjct: 919 KARADAVSQAKTDFLSRMSHEIRTPLNAIVGMTSIARN---VADDRDRVLECLDKLETSN 975 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q+L++LIN+ILD+SRIE+G+ EL+ + + D VR M++ +A++K + + Sbjct: 976 QYLISLINDILDMSRIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQ 1035 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIA 413 ++ D + QV++N++ NAVKFT GG V ++ G + S+KD G GIA Sbjct: 1036 GLALVTDRLRLEQVLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIA 1095 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAI 471 + ++ +F Q G GLGL I+ ++ GG +RS L EG E Sbjct: 1096 SEAMDSIFNAFEQAEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRSVLGEGSEFYFTLT 1155 Query: 472 LPNTRVLNFIPED-NHESTQYKC 493 LP ++ P E + Sbjct: 1156 LPIGKLDGQRPRSREPEHHDFHG 1178 >gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1118 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 6/257 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ + +RAE+ + AKS FL+SMSHELRTPLN+I+GFS+++ + + Sbjct: 733 ITRRKEAEEHLIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLLSMADL----P 788 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + I SG HLL LIN++L+LS+IE G EL + + L D V C+ + AQ Sbjct: 789 EKEQHQVDHISESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLSTVDPMAQ 848 Query: 345 EKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +E+ + V+ADE ++QV+LN LSNA+K+ G+V + I Sbjct: 849 KYLVELERPDWKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLLETGKVRI 908 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI + + V S+ + S +G G+GL I Q ++ GG S+ Sbjct: 909 SVTDTGYGIPKDKQSNVFNSYDRLGH-ESSTIEGTGIGLNITQQLVFLMGGDIGFSSQEN 967 Query: 464 EGVEVIAILPNTRVLNF 480 EG P + + Sbjct: 968 EGSCFWVDFPLSTIHQT 984 >gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1167 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 3/294 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLAEQSKALAEQRDALDRKNEELNMAQAELQARADELQRSSKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLATEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G S++D+G GIA + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GAVSMIVSRQPGAGIVFSVRDSGIGIAPEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL I++ + A GG + S +G +LP + PE Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEHYTEHGAPE 727 >gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1000 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 8/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + R++AE N KS FLA+MSHE+RTP+NA+LG + + + Sbjct: 461 VTERKLLEQEMLAARQQAEAANAVKSEFLANMSHEIRTPMNAVLGLIYLCLQTQL----S 516 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + + + + LL+++N+ILD+S+IEAG+ E+ + L +++ + +L+ R + Sbjct: 517 AEQRDMLSRSYAAAESLLDILNDILDISKIEAGKLEVEQVEFPLAEVLDKVFNLLKFRVE 576 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 EK ++ +D + +V D + QV+LN+ NAVKFT G + G Sbjct: 577 EKGLKHSVTVDEEVPSTVIGDPMRLGQVLLNIAGNAVKFTEQGSVSLELFCEAGVDGDLV 636 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +D G G++ ++ + SF Q I G GLGL I++ ++ GG + S Sbjct: 637 LRFVFRDTGIGMSHEQMENLFESFNQTDTTITRKYGGTGLGLAISRRLVHLMGGDIQVES 696 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + +G + V +P Sbjct: 697 EPGKGSTFTFSVRFRSVERHVP 718 >gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] Length = 915 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 150/350 (42%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V +V A I + + L Sbjct: 167 IFISTLLLLFCMCVAILFAYRLMRDVTGPIRNMVNA--VDRIRRGQLDSR----VEGHML 220 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ KRA+E Sbjct: 221 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLANKRAQEAA 280 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 281 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 336 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 ++LD S++EA + L L + E +I+L A EK +E+ I+ + V D Sbjct: 337 DVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHINNDVPEQVVGDA 396 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 397 MRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTGIGISESQQAQLFQ 456 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q +I G GLGL I + ++ GG S++ G L Sbjct: 457 AFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFRFHL 506 >gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] Length = 329 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + +AE + KS FLA+MSHE+RTPLN+I+GF+ ++ E + Sbjct: 85 IDHQKKIEEELIIAKDKAENLDRLKSAFLANMSHEIRTPLNSIVGFASMLVEE----EDK 140 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + YI + + + LL LI++ILDLS+IEAG + + +++ D + + +++ Sbjct: 141 EERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIKED 200 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + P ++ D+K + QVI N ++NA+KFT+ G++ + + G Sbjct: 201 KPVPVVLASGLPDY-RIYTDKKRLMQVITNFINNALKFTSK-GQITLEYHFKEGTNEIEF 258 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + V F + + +G GLGL I +SI+ + GG S++ Sbjct: 259 SVTDTGIGIAPDAVGQVFDRFVKL----NTFSKGTGLGLSICRSIVEHLGGTIGAESEVG 314 Query: 464 EGVEVIAILPNTR 476 G P Sbjct: 315 VGSRFWFTHPCAE 327 >gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 762 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 143/255 (56%), Gaps = 8/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + AEE AKS+FLA+MSHE+RTP+N ILG E++ ++M P Sbjct: 157 VTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSKSMSP--- 213 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I S + L+ ++N++LDLS+IE + EL L ++ + ++ +A Sbjct: 214 -DQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQAH 272 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 K + + I P+L+S V D+ +RQV+LNLLSNA+KFTA+G + V V +S Q+ Sbjct: 273 AKGLRVRITISPALASSVEVDDMRLRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSDTTQH 332 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 IS+ D G G+++ + + F QG +I + G GLGL I+Q ++ GG+ + + Sbjct: 333 LAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGELALET 392 Query: 461 KLREGVEVIAILPNT 475 + G V +LP + Sbjct: 393 EEHVGTNVTVVLPVS 407 >gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03] Length = 2254 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q E E +++ E + E+ Sbjct: 1681 VGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1740 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G +E+++ ++ + Y+ I LL LIN Sbjct: 1741 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTSL----DREQNGYVDSIRVCADTLLTLIN 1796 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ +++ ++L D + E + L + + ++ + +D + V D Sbjct: 1797 DILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTIEDLDELDPNLLVMGD 1856 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V+ I+ + D G GI ++ + Sbjct: 1857 PVRLHQIFMNLLSNSYKFTPQGSVTVNAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLF 1916 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L V + Sbjct: 1917 RPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFSL----VFSK 1972 Query: 481 IPEDN 485 P+D Sbjct: 1973 APKDA 1977 >gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759] gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759] Length = 528 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 8/312 (2%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 ++ + + ++ L + + + N ++ Sbjct: 188 MLSTTFVPFLSLMLIAMIALMLMSNSLLKPIREIIKTSKSYAQGNFNARVNVTANNEFGE 247 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + ++DE N + F++++SH+ R+PL +I G+ E + G + E Sbjct: 248 LARYMEEMADE----LSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLD---GTIPLER 300 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +++Y+G + Q L L +L+L+ ++ +L +S + DI+ + + R Q++ Sbjct: 301 HEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDR 360 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I + + V+AD ++QVI NL+ NA+KFT G ++ V V +IS+K Sbjct: 361 GIFLESVFLTDNTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVT-EKDNKIFISVK 419 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + V F + + + G GLGL I + I+ HG Q + S+ +G Sbjct: 420 DEGIGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGS 479 Query: 467 EVIAILPNTRVL 478 E I LP + + Sbjct: 480 EFIFSLPKEKDM 491 >gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 547 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 172/355 (48%), Gaps = 13/355 (3%) Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 LTI L+ A ++ + + + F V+ T+ +++ + ++ Sbjct: 186 GDLAGALTISIPMELMKANLNKSILESVFLTVLIVFFTACVITFLTRRFITIPISKLTGF 245 Query: 191 GMLAT---------ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + I + + L +++ + K Sbjct: 246 AQELGRGNLTAQPEYYKSYGEIKELTERFTDMAHKLHDIYEQLESKVAERTAELAAANKE 305 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E + K+ FLA+MSHELRTPL AIL F+E + ++MG L N +EY+ DI SG+ L Sbjct: 306 LAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQL-NAEQEEYLKDIRDSGRQL 364 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 LNLIN++LDLS+IE+G+ L+ + +++ + VR +L+ AQ+KNI++ I + + Sbjct: 365 LNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQKNIDMQSAITGTNV-I 423 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPT 419 ADE+ +RQVI NLL NA+KFT GGR+ + V T G +++KD+GPGI + Sbjct: 424 IADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLLTVKDSGPGIPAKDRAR 483 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + SF QG G GLGL + + I+ H G+ + S +G LP Sbjct: 484 IFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLESTEGQGSAFTVYLPA 538 >gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1364 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 143/345 (41%), Gaps = 20/345 (5%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 ML + A++ + L + ++ Sbjct: 551 RAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQV 610 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + DL E ++ + A+ N +KS FLA+MSHE+RTP+NAILG ++ Sbjct: 611 IGYLGVAVDL-TEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLL 669 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++ + I RS + LL +IN+ILD S+IEAGR +L + L + Sbjct: 670 QRSEL----PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725 Query: 335 CIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 +++ K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSV 784 Query: 394 GWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S++D G GI++ + + + F Q + G GLGL I++ + Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRL 844 Query: 449 MANHGGQFLIRSKLREGVEVIAI--------LPNTRVLNFIPEDN 485 + GG+ + S G E + L R L +P + Sbjct: 845 VELMGGELEVESVPGRGSEFYFVVTLEKSAPLQAQRELPVLPPEA 889 >gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4] gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1969 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 135/250 (54%), Gaps = 10/250 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 +D ++AE N AK FL ++SHELRTP+N +L ++++E T+ T K Sbjct: 941 RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 996 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ I SG +LL+LIN+ILD S+IEAG+ E+ + S++ ++ I ++ EK + Sbjct: 997 EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGL 1056 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----I 403 ++ IDP++ V D++ ++Q++LN LSN++KFT G++ + V S + Sbjct: 1057 DLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNH-GQIIIRVKLESDDSTHSLIKF 1115 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D+G GI + + SF Q QG GLGL I++ + GG ++S+ Sbjct: 1116 DVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVKVKSEFG 1175 Query: 464 EGVEVIAILP 473 G +P Sbjct: 1176 VGSTFSFTIP 1185 >gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 929 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 10/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ ++ AE N AKS FLA+MSHE+RTP+NAI+G SE++ + Sbjct: 250 HDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSELQH- 308 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 Y+ + S + LL++INEILD S+IEAG ELS I L D+V E + L R Sbjct: 309 ---QQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAAR 365 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TS 397 A K +E+ ++DPS+ V D +RQ+++NL+ NA+KFT G + V V T Sbjct: 366 AHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEA-GEIVVQVKSLEMSTD 424 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G GI + + + +F Q + G GLGL IA + + GG Sbjct: 425 SVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMIW 484 Query: 458 IRSKLREGVEVIAIL 472 S L +G + Sbjct: 485 AESMLGQGSVFHFKI 499 >gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 766 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ AE + AK+ FLA+MSHE+RTP+N ILGF++++ +G + I S Sbjct: 284 ARRSAEMASAAKTGFLANMSHEIRTPMNGILGFADLL----LGAGLPPDQHRQVKMIADS 339 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ ++ L+N+ILDLS++EAG+ E++ L+ + C+ ++++ A++K I++ + I Sbjct: 340 GRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGIDLIRDIADD 399 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L V D +RQV+LNLL NAVKFT+ G V + V I ++D+GPGIA Sbjct: 400 LPRTVTGDGLRLRQVVLNLLGNAVKFTSE-GHVALRVHLDGADRLVIVVEDSGPGIAPER 458 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q + G GLGL I+ ++ G+ + S + EG I LP Sbjct: 459 QAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLPCE 517 >gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 554 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 161/370 (43%), Gaps = 41/370 (11%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++A S A F+L V V+ L A ++ + ++ A A +F I Sbjct: 177 VVAASYEAARTFILFDTVMAIIISAVIGLFLSARIARRLQRLAQAANRVAAGNFVGAINE 236 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR-------------- 251 + + D ++A L ++ +E ++ + + Sbjct: 237 RIRDEIGDLAQAF---DQMLASLRSQRAELEERNCALQDSLARQEQLMAEVIRGKQAEAE 293 Query: 252 -----------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 FLA+MSHELRTPLNAILG+++++ ++ + P ++++ Y+ I Sbjct: 294 AERARAAAEAASQAKSAFLATMSHELRTPLNAILGYAQLLHIQKVVP---DSHQPYLERI 350 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SG+HLL+LI+ +LD +RIE G +L + + +V E + M AQ + I Sbjct: 351 LTSGRHLLSLISNVLDFARIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDC 410 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPG 411 P + + D + +RQV++NLLSNA KFT G + + V G ++ D G G Sbjct: 411 PPEIGVIETDGRRLRQVLINLLSNAAKFT-EDGLIRLEVTAIQHNGRDGLRFAVHDTGIG 469 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + F Q ++ +G GLGL +++ I+ GG ++S + G Sbjct: 470 IPPDKQHKLFQPFSQVDDSVTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVW 529 Query: 472 LPNTRVLNFI 481 +P V Sbjct: 530 IPVVPVPTSS 539 >gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 933 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 18/302 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + L N ++ + + +L+ A +E ++ + KS FLA+MSHELRTP Sbjct: 475 SEELRMINEQLEERTRDAEKKSRDLQQANKDIEEKAEQLLLSSKYKSEFLANMSHELRTP 534 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL SE++ G E KE IH SG+ LL+LIN+ILDLS+IEAG+ ++ Sbjct: 535 LNSILLLSEMLSEGQ-GEEIPEEQKEVAKVIHSSGKDLLSLINDILDLSKIEAGKLDMLF 593 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 ++L ++ AQ+KN++ I L + + D++ +Q+I NLLSN+ KF Sbjct: 594 EEMNLSELPSYLEYNFSHLAQKKNLDFNISIAEDLPGIMYTDQQRFQQIIKNLLSNSFKF 653 Query: 383 TAIGGRVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 T G V + V I + D G GI E + + +F QG Sbjct: 654 TEK-GSVSIEVNLADPEKTKNLPLKSKTDFWTEIKVSDTGIGIPESKQSIIFEAFQQGDG 712 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 A G GLGL I + GG + S+ +G +P+ + N + E+ H + Sbjct: 713 ASVRKYGGTGLGLSICREFAKLLGGWIFVDSEEGKGSTFTLFIPS--LPNGLEEEQHTAA 770 Query: 490 QY 491 + Sbjct: 771 AH 772 >gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 2782 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 2/233 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K +F++ +SHELRTPL AI G+ +V+ L L + Y+ I + L Sbjct: 2540 EADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQI-NYLTIIKNNTNRLRA 2598 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI +IL+ SR ++ + +L+ + + + ++ E + L+L + K + + P+L V A Sbjct: 2599 LIEDILEFSRPDSKK-KLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTLPPVTA 2657 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+K + Q+I NL SNAVK+T GG + V I ++D G G++ ++ + Sbjct: 2658 DQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQLKKLFRP 2717 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + ++ G GLGL IA+ ++ HGG+ + S+L +G +P + Sbjct: 2718 FYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQ 2770 >gi|300690679|ref|YP_003751674.1| sensor hybrid histidine kinase [Ralstonia solanacearum PSI07] gi|299077739|emb|CBJ50377.1| sensor hybrid histidine kinase [Ralstonia solanacearum PSI07] Length = 610 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 97/488 (19%), Positives = 189/488 (38%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69 + + P GL + ++ D L I VL V + ++ Sbjct: 1 MTASLRPLLTKFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 60 Query: 70 PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + GL W Sbjct: 61 LALAGWCLIMLCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAG 120 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++ Sbjct: 121 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFALAEQAFPEH 178 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + G+L +F ++ + V+ + + E L A+ DE ++RA Sbjct: 179 GLYVRGVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 231 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +E+ + + Q + L Sbjct: 232 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSESLAPLVEQLASGAQTIDLLF 287 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 288 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLTLTQRIPPLPVFGMAEP 347 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 348 VLLRRALFNLLQNALRYTSHGGVMVTLRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 404 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G F +RS G L P Sbjct: 405 YQVENPERDPSQGLGLGLAIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPADIKAPLA 464 Query: 485 NHESTQYK 492 ++ K Sbjct: 465 AQPRSEQK 472 >gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e] gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL R2-561] gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e] Length = 596 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 339 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 396 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 397 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 456 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWT-S 397 A+E +E+ +++ D M QV++NL+ NA++ T G+V + + Sbjct: 457 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVA 516 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 517 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 576 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 577 SVESELGKGSDFIITLPLYK 596 >gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 934 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 132/266 (49%), Gaps = 5/266 (1%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ AE E E R++AE N K FLA +SHELR+PLN ILG++++++ Sbjct: 533 TERKQAEAERERLLQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRP 592 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P E ++ + I R+ + LI ++LD+SRI G+ L+ + L+ ++ + Sbjct: 593 FAP---EKAQQALQTIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALET 649 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +QL A+ K I++ + + + + D ++Q++ NLLSNA+KF+ G RV + + G Sbjct: 650 VQLSAEAKGIQLERHLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERV-G 708 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++D G GI +P V F Q G+GLGL I + + HGG Sbjct: 709 AEAQMQVRDTGKGINPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQA 768 Query: 459 RS-KLREGVEVIAILPNTRVLNFIPE 483 S +G LP +V + E Sbjct: 769 ESGGEGQGATFKVRLPLLKVGHSSEE 794 >gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1038 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 123/266 (46%), Gaps = 19/266 (7%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + ++ LE + R+ AE+ N AKS FLA MSHE+RTP+N ++G + + Sbjct: 341 SVEDITQQKQAQTALEQQNRALKDARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGL 400 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + P + + I SG LL +IN+ILD S+IE+G+ +L E L D V Sbjct: 401 LLDTELTP----DQRHFAETIRNSGDALLTIINDILDFSKIESGKLDLEEQPFELRDCVE 456 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + +L +A K +E+ + D + V D +RQ+++NLLSNAVKFT G V Sbjct: 457 DALDLLAAKAAAKKLELGYRFDSHIPDQVRGDVTRVRQILVNLLSNAVKFTEAGEIVVSV 516 Query: 393 VGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G ++ D G GIA + + F Q + G GLG Sbjct: 517 TGRKLENEADSHPDSNRYHIQFAVNDTGIGIAPQRMHRLFKPFSQVDSSTSRQYGGTGLG 576 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVE 467 L I + + A GG + S G Sbjct: 577 LAICKQLSAMMGGTMWVES---HGTV 599 >gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] Length = 870 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 127/249 (51%), Gaps = 8/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLN+I+GFS++++ + + Sbjct: 626 IQRYKTTEEELIAARDKALQADTLKSAFLANMSHEIRTPLNSIVGFSDLLKD--IDAFSP 683 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ I+ + LL LIN+ILDLSRIE+G + + +L+ ++++ Q + Sbjct: 684 EEVKQFVDTINTNCTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDS-QRLSM 742 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ K+ S+ D ++QVI N ++NA KFT G + Sbjct: 743 PPGVELVMKLPEESKSIVTDSIRLKQVINNFINNAKKFTTQ-GSITFGFQTEDPGYTVFF 801 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + F + S QG GLGL I Q+I+ G+ + S+L + Sbjct: 802 VEDTGSGISEENQRRIFERFYKVD----SFTQGAGLGLSICQTIVERFRGEINVSSELGK 857 Query: 465 GVEVIAILP 473 G +P Sbjct: 858 GTRFTVRVP 866 >gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] Length = 867 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RA + + KS FLA+MSHE+RTPLNAI+GFS++++ + + Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ I+ + LL LIN+ILDLSRIE+G + A +L I++E +L Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + V D ++QV+ NL++NA KFT G + I Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + F + S QG GLGL I Q+I+ G + S+L + Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854 Query: 465 GVEVIAILP 473 G ++P Sbjct: 855 GTRFEVVIP 863 >gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 526 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 188/458 (41%), Gaps = 12/458 (2%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 L + RE+ L L + ++ + L A M Sbjct: 30 RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVALPAGVAMVC 89 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L +++L ++ ++ I + L+ ++P Sbjct: 90 AAFLFSAVGSIALARQGSSAGIATQSAE---------DFYLAATPGLVFFLDPHGSVATV 140 Query: 137 LTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + + L + + S+ + + Sbjct: 141 GGRDRRDFLAWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRD 200 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + + L+ + ++ + + + AE N AKSRFLA Sbjct: 201 QRQFAYLRMDMTARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLA 260 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHELRTPLNAILGFS+++ E G N+ +EY+G + SG HLL+++N +LD+S+I Sbjct: 261 AVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKI 320 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGRYEL A + V+ C ML L+A+ K + + +I L V AD++ ++Q+++N Sbjct: 321 EAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRGLGEVVADQRAIQQILIN 380 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+KFT GG V V +++ D G GI ++ + F Q Sbjct: 381 LVGNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRR 439 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL + + ++A HGG F I S+ EG + + Sbjct: 440 FEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEI 477 >gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes] Length = 624 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 147/277 (53%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 329 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 384 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 385 AVQILDLYKKDGNSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 444 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ E + + A+ K+I I D + D + ++ILNLLSNA+KFT GG + Sbjct: 445 NLIEEITLSVVYYAESKDINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNI 504 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +V + IS+KD G GI + +I + F Q ++ ++G G+GL + +S + Sbjct: 505 YVNIK-DCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFV 563 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S + +G E I +P V +N Sbjct: 564 NMHEGTIDIQSVIGKGSEFIINIPVKLVKEESESENS 600 >gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 878 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 11/259 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + ++ E +T++ A N AKS FLASMSHE+RTPLN I+G +E++ + Sbjct: 350 QVNRMMEEQNRQTEEILKTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL 409 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 KE + DI S LL L+N+ILDLS+IE+G +LS + ++V + +I+ Sbjct: 410 SDH----QKEVLTDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILF 465 Query: 340 QLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 Q +A K +E+ +D + D+ ++Q+I+NL+SNAVKFT G + V V + Sbjct: 466 QSKATSKQLELNINLDERIPPRIMVDDHRIKQIIMNLVSNAVKFTHE-GHISVDVDYQES 524 Query: 399 RGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 Q + D G GI ++ T+ F Q I G GLGL I + ++A G Sbjct: 525 PTQKSVFLTFRVTDTGVGIERDKLNTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMG 584 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ S G + Sbjct: 585 GKLTATSSKGIGTSFEFSI 603 >gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 919 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 140/306 (45%), Gaps = 20/306 (6%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + K I E + R+ AEE N AKSRFLA+MS Sbjct: 551 GSVIPVEVKIGKIYYSNQEHIMALVQDITERKQVHQELI-ARRSAEEANRAKSRFLANMS 609 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+NA+LGF+ ++E P G I RSG HLL L+N ILD+SRIEAG Sbjct: 610 HEIRTPMNAVLGFARMLEN---DPALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAG 666 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + L L ++ + + M +L AQ+K +E+ + DP L + AD+ + Q++ NLL Sbjct: 667 QSGLHPEDFHLPGLIDKLMTMFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLL 726 Query: 377 SNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFG 425 SNA+KFT+ G V +T+ G ++D+GPGI + + F Sbjct: 727 SNAIKFTST-GEVKLTISSKPPGPADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFF 785 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 Q K G GLGL I++ GG + S+ G +P R P Sbjct: 786 QTQN--KMHPGGTGLGLTISREYAVLMGGNLTVSSQEGRGSCFRLEIPVKRARTQTTPRQ 843 Query: 485 NHESTQ 490 + Q Sbjct: 844 PASAMQ 849 >gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1019 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 18/274 (6%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +K+AEE N AKS FLA+MSHELRTPLN ILG+++++ + K + Sbjct: 613 ELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILGYAQILM---FDESLSAEQKSSL 669 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + GQHLL LI ++LD S+IEA R EL +A+ + + I Q++A EK + + Sbjct: 670 SIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFHYFILDIIQTCQIKATEKQLLLN 729 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSG----------R 399 IDP + + D++ +RQV+LNLL NA+KFT G V V + Sbjct: 730 YDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSVVLDVQLSQPPQTPPKSPKHHWH 789 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + +++D G GI + F Q G GLGL I+Q ++A GG+ + Sbjct: 790 RVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRSRPH-GTGLGLAISQKLVAMMGGELQLT 848 Query: 460 SKLREGVEVIAILPNTRVLNFIP--EDNHESTQY 491 S +G L + VL P ++ + + Sbjct: 849 SYPNKGSCFSFDLELSEVLVSPPLVAEDQATRDH 882 >gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 617 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 151/277 (54%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA +SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLAKISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKEDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + +++LNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +VTV IS+KD G GI E +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVTVK-DFEDNIIISVKDTGIGIPENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S++ +G E I +P V + ++N+ Sbjct: 557 NMHEGTIDIQSEIGKGSEFIINIPVKLVKEDLEKENN 593 >gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response regulator, SSF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1323 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 10/304 (3%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNV---KILSCQAEKDDLIAELEVAKSLSDE 237 H +++A L + + + + + L + Sbjct: 794 RPHAYTMAMAAPLYDSEGEVIAVIESVRDITELKEGEDELKRHRAHLEELVRERTMELLV 853 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++RAE N AKS FL+SMSHELRTPLNAILG++++++ + + ++ + + Sbjct: 854 AKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD---NLTDAQRQQLEIVRGC 910 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+HLL+LIN++LD+ +IEA + EL+E + L ++ + + +++A EK++ + Sbjct: 911 GEHLLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNR 970 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEG 415 L V D++ ++Q++LNLLSNAVK+T G V V V + S G + I D G GI Sbjct: 971 LPRAVRGDQRKLKQILLNLLSNAVKYTHR-GCVTVRVRYHSSTGVFACEITDTGTGIPRD 1029 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + F Q + + +G GLGL I + +++ GQ + S+ G LP Sbjct: 1030 KLGIIFEPFVQLADGGQIR-EGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELPLP 1088 Query: 476 RVLN 479 V Sbjct: 1089 TVTE 1092 >gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] Length = 668 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/435 (20%), Positives = 159/435 (36%), Gaps = 14/435 (3%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + L L ++ + + L + E Sbjct: 87 VCYAALFAGLVALQISPLAQPILPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 146 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS----ATLLIALSISALSNFMLP 160 + +L + +T + ++ + Sbjct: 147 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 206 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + + ++ L T L + + I E Sbjct: 207 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAIDI----TE 262 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 A R+ AE + K FLA++SHELRTPLNA+LG+++++ M Sbjct: 263 HRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 319 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P + ++ + I RS + ++LI+++LD+S I +G+ L + L D++ ++ Sbjct: 320 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 379 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K I I + P + + D ++QV NLL+NAVKFT GG + V V + Sbjct: 380 PMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGL 438 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G GI +P V F Q ++ G+GLGL IA+ ++ H G+ S Sbjct: 439 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAAS 497 Query: 461 K-LREGVEVIAILPN 474 G + LP Sbjct: 498 NGANLGTTMAVTLPL 512 >gi|302669371|ref|YP_003832521.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302397035|gb|ADL35939.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1409 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 22/289 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G F +I + +S + + + AE N AKS Sbjct: 770 GSFVLVGLFIAWIVWAFLRSTI---------------IRKQYKEIAIAKDEAERANTAKS 814 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG---DIHRSGQHLLNLINE 307 RFLA+MSHE+RTP+N I+G E++ E + + Y I DI + + LL LIN+ Sbjct: 815 RFLANMSHEIRTPINTIMGMDELLLREAHDNVPDSYYTAVINYGVDIKNAAESLLGLIND 874 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 +LD+S+IE+G+ L E ++ +R I M+++++ EK++ ID S+ ++ D Sbjct: 875 VLDISKIESGKMHLVEQEYDTVECLRGIITMIRVKSSEKDLSFDTNIDESIPKRLYGDIG 934 Query: 367 GMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q++LNLL+NAVK+T GG V VT S+KD G G+ + + ++ Sbjct: 935 KIKQIVLNLLTNAVKYTEKGGFTLTVTVTSKNADKCSLRFSVKDTGIGVKAENMEKLFSA 994 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + S QG GLGL I++ G+ S EG + I L Sbjct: 995 YERLDEEKNSGIQGTGLGLDISRRFAELMNGRLWCESTYGEGSDFILTL 1043 >gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1430 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 10/260 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + R+ A AKSRFLA+MSHE+RTPL I+ E+ E +G Sbjct: 777 ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGY--- 833 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + +S +LL+++N+ILD S+IEAG+ L SL + + +A Sbjct: 834 -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 892 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 K ++ +DP L V D+ + QV+ NLLSNA+KFT G V + + Sbjct: 893 AKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT-EYGTVGLAAKLLDLDGEQQ 951 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G GI+E I + F Q G GLGL I++ ++ GG + Sbjct: 952 QICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGSLNVT 1011 Query: 460 SKLREGVEVIAILPNTRVLN 479 SK+ G LP + Sbjct: 1012 SKINIGSTFSITLPLKTLAE 1031 >gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Erythrobacter sp. NAP1] gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Erythrobacter sp. NAP1] Length = 999 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 108/518 (20%), Positives = 186/518 (35%), Gaps = 47/518 (9%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71 V + + F + + L V + + + Sbjct: 211 VADAVRTATAPKTTALFKRAVFTAVALVAVWLVFRQDIYPLLFLVPPITLLVAFRGGGIG 270 Query: 72 FPMWSLITLAVYAANLSLGK-KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130 ++ + V + G ++NS + + GL + Sbjct: 271 TVLFVPMIAGVASWMTVAGYGPIVNSSKSALDAVFVLQAFVAANFLTGLPIAAILAGRER 330 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF-----------PVVVALSTQAI 179 + L ++ + L ++ S V ++++ Sbjct: 331 MTEELARGRGELGLLAETITDAVLRLDRDRVCIYASPSVEDVMGRPPEDLVGHPIASRGP 390 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD----------------- 222 H S L + S ITY + + E D Sbjct: 391 EDAHARIESALDSLLSGQSDKERITYRRLLDDEEGTPVFIEADCAIVLDPITGERDGVVV 450 Query: 223 --DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + E + L R+ AE AKS FLA+MSHE+RTP+N +LGF+E++ + Sbjct: 451 SARDVTERVELELLLTRARRHAENAARAKSEFLANMSHEIRTPMNGVLGFAELMLQGDLE 510 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P N + + I SG+ ++ L+N+ILDLS+IEAG+ + + L+ + EC+ + Sbjct: 511 PDN----RRHTEMIVESGRSMMLLLNDILDLSKIEAGQIAIDSQPVDLVSTLAECVQLHL 566 Query: 341 LRAQEKNIEIFQKIDP----------SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 A+ K + + V D +RQ++LNL+ NAVKFT G V Sbjct: 567 PNAEGKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQIVLNLIGNAVKFTEK-GSVD 625 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V + + + + +KD G GI + T+ F QG G GLGL I++ + Sbjct: 626 VQLSIQAEQF-RVDVKDTGIGIGAKRVQTIFAPFTQGENDTSRRFGGTGLGLTISRQLAE 684 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 GGQ + S++ G ILP V +P + + Sbjct: 685 LLGGQIEVCSEVGIGSTFSLILPAHYVEPEVPALSQAA 722 >gi|163802031|ref|ZP_02195927.1| sensor histidine kinase [Vibrio sp. AND4] gi|159174172|gb|EDP58980.1| sensor histidine kinase [Vibrio sp. AND4] Length = 806 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 21/307 (6%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------------EKDDLIAELE 229 ++ L +L YI + + KI +A E LI + Sbjct: 274 RGIIPFLLVCVLVGYYLLNRYIVEPIVRIAQKIDDSKAGSIIDIGYDSADEIGHLITKFN 333 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ R +A AK+ FLA++SHE+RTP+N +LG ++++ + NE ++ Sbjct: 334 EKTVYLEQERAKALASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTRL----NEEQRK 389 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ ++ SG H++ L+NEILD S+IE G E+ + + I+ + EK +E Sbjct: 390 YLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSINSIYDSLCAEKGLE 449 Query: 350 IFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405 + P D+ +RQV+ NL++NAVKFT G V V + Q YIS+ Sbjct: 450 FRVISNVPEGRWYNNDKARLRQVLFNLINNAVKFTDQ-GYVEVELTEQVSGDQTHLYISV 508 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G GI + F Q + G GLGL I + I + GG ++S+ G Sbjct: 509 KDTGIGIRPDAQKRIFRPFEQAESSTTRRYGGTGLGLAIVKQISDHMGGSVTVQSQEYIG 568 Query: 466 VEVIAIL 472 + L Sbjct: 569 TNFVVEL 575 >gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 867 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RA + + KS FLA+MSHE+RTPLNAI+GFS++++ + + Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ I+ + LL LIN+ILDLSRIE+G + A +L I++E +L Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + V D ++QV+ NL++NA KFT G + I Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + F + S QG GLGL I Q+I+ G + S+L + Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854 Query: 465 GVEVIAILP 473 G ++P Sbjct: 855 GTRFEVVIP 863 >gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1112 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 9/246 (3%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++ AE N AK+ FLA MSHE+RTP+N I+G S +++ + N+ ++ Sbjct: 459 EEMVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVGMSNLLKETDL----NQQQSYFVD 514 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + S LLN+IN++LDL++IEAG+ L E L D+V + +++ +A EK++ + Sbjct: 515 TLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTDLVHDALVVFHAKAVEKSLRLHC 574 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDN 408 IDP L + D Q+ILNL+ NA+KFT G V V + + G + +KD+ Sbjct: 575 LIDPHLPRWLILDPVRYTQIILNLVGNALKFT-KHGSVMVHLSLVTEGGSDMLRLEVKDS 633 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E ++ + +F Q + + QG GLGLP+ + + G + SK G Sbjct: 634 GIGIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRKFIELMDGDIRVVSKEAVGTTF 693 Query: 469 IAILPN 474 A +P Sbjct: 694 TADVPL 699 >gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2151 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 165/408 (40%), Gaps = 26/408 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R +++ + G ++ L T++ ++ + T I + ++ ++ M A+ Sbjct: 1303 RNIVVLPVLFEGEVKAVIELASFHTFSEVHMGFLEQLTESIGIVLNTIAANMRTEALLKQ 1362 Query: 167 FFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + L + + + A L + L +N ++ + Sbjct: 1363 SQALTDELRKQQEELTETNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAKLLSEQ 1422 Query: 225 IAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E+E ++ + EE + KS FLA+MSHELRTPLN++L S+ + Sbjct: 1423 KTEVERKNGEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDN 1482 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G L + E+ IH SG LL LIN+ILDLS+IE+G + + D+ Sbjct: 1483 VDGNLTS-RQVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDR 1541 Query: 338 MLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 + A +K +E + SL + D K ++QV+ NLLSNA KFT G V + +G Sbjct: 1542 TFRQVADKKGLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFT-ESGSVSLDIGLA 1600 Query: 397 SGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G ++ D G GI + + + +F Q + G GLGL Sbjct: 1601 KGGWSPDHAMLSAAPAVVAFTVVDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLS 1660 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 I++ I GG+ + S + G LP + P Y Sbjct: 1661 ISREIARLLGGEIRLESDVGTGSAFTLYLPLAF-MAERPAQEPARWDY 1707 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 5/299 (1%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 + + A + + FK + + +E+ E + Sbjct: 956 AFRLEYRLRRFDGEYRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRLLQREQ 1015 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R AE+ N K FLA +SHELR+PLN ILG++++++ + + + T+K+ + I R Sbjct: 1016 AARTEAEKANRIKDEFLAVLSHELRSPLNPILGWAKLLQTKKL---DGATFKQALSTIER 1072 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + Q LI ++LD+SRI G+ L+ ++L I+R I + L A K+I+I +D Sbjct: 1073 NAQLQAQLIEDLLDVSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQTTLDE 1132 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 ++ + D ++Q++ NLLSNAVKFT+ GGRV V + G+ I++ D G GI Sbjct: 1133 TVGQILGDPARLQQIVWNLLSNAVKFTSTGGRVEVLLESV-GQSAQITVSDTGKGITSEF 1191 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 +P V F Q G+GLGL I + ++ HGG S +G P Sbjct: 1192 LPYVFDYFRQADSTTTRKFGGLGLGLAIVRHLVELHGGTVGAESPGENQGATFWVKFPL 1250 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 9/317 (2%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 + + + +A T + + + F+ + +A Sbjct: 250 LPSGAWQRTPHQAVVVPIASSGQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASIA 309 Query: 232 KSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + +E RKRAE E + AK+ F +++SHE RTPL +LG E + + PL + Sbjct: 310 NAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLG-PSQ 368 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +E I + R+G LL L+N +LD SRIEAGR E A L E + + + Sbjct: 369 QERIEIVQRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAG 428 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + + P V+ D + +++LNLLSNA KFT G + V++ W +S+ D Sbjct: 429 MRLMVNCPPLPEPVYVDREMWEKIVLNLLSNAFKFTL-NGEISVSLEWVK-HSVKLSVND 486 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI E EIP + F + A + +G G+GL + Q ++ H G + S G Sbjct: 487 TGIGIPEAEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTC 546 Query: 468 VIAILPNTRVLNFIPED 484 +P +P++ Sbjct: 547 FTIFIPTG--TAHLPQE 561 >gi|311747684|ref|ZP_07721469.1| sensor histidine kinase/response regulator fusion protein [Algoriphagus sp. PR1] gi|126575672|gb|EAZ79982.1| sensor histidine kinase/response regulator fusion protein [Algoriphagus sp. PR1] Length = 981 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + ++ +E R AE+ + KS FL+ +SHELRTPLNAI G + E N Sbjct: 588 ISEQKEFENKLNEARMTAEKASQIKSEFLSMISHELRTPLNAISGSVYSLLQE----ETN 643 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + I+ + +L+ +IN++LD +IEAG+ + + +++ + I L A Sbjct: 644 SSQESALNTINFAVDNLIIMINDLLDFQKIEAGKLTIEKEPFQFQNLINQIIKGLSFHAG 703 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG-- 400 + + I L + D+ + Q++ NL++NA+KFT G V V + +S Sbjct: 704 DSKNNLNLHISEGLEIWLKGDKTRLSQILNNLITNALKFTNEGDVDVTVKLKESSNEKAK 763 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 Y +KD+G GIA+ + F Q + G GLGL I + ++ GG + S Sbjct: 764 VYFEVKDSGIGIAKENQDKIFNDFDQVRPTFSTKYGGTGLGLSITRKLLQLMGGTIQLES 823 Query: 461 KLREGVEVIAIL 472 ++ +G + L Sbjct: 824 EVGKGSKFYFEL 835 >gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1164 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 3/270 (1%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + D EL A++ +E + + + KS FLA+MSHELRTPL Sbjct: 450 EQLAEQAQILADQRDAMDRKNNELNEAQTQLEERAEELQRSSKYKSEFLANMSHELRTPL 509 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N+ L ++++ L+ E K + I+ +G LLNLIN+ILD+S++EAG+ E+ Sbjct: 510 NSSLILAKLLAENPQENLSPEQVK-FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPE 568 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT 383 S+ +V + Q Q+K +E ++ P + + D + + Q++ NLLSNAVKFT Sbjct: 569 NASVPRLVDGLRSLFQPLTQDKGLEFKVELQPGAPQMLFTDRQRVEQILKNLLSNAVKFT 628 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G+V +TV G G +++D+G GIA+ + ++ +F Q G GLGL Sbjct: 629 EK-GQVSLTVSAQPGAGIAFAVQDSGIGIAQDQQQSIFEAFRQADGTTNRRYGGTGLGLS 687 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I++ + GG + S+ G +LP Sbjct: 688 ISRDLATLLGGSISVSSEPGRGSIFTLVLP 717 >gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1] gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1] Length = 1248 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 13/274 (4%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRT 262 + S + ++ ++ A++ ++ + AE+ KS FLA+MSHE+RT Sbjct: 674 RISGSAIDPSDLSRGTVWMLEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRT 733 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NAI+G + + + P K+Y+ I +SGQHLL +IN+ILD S+IEAG+ E+ Sbjct: 734 PMNAIIGMAHLALKTDLDP----RQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVE 789 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 + I L ++ ++ +A K +E+ + + + D + QV++N +NAVK Sbjct: 790 ATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVK 849 Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G + V V G ++D G G+ + + + SF Q + G Sbjct: 850 FTEA-GEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGG 908 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ + GG + S +G Sbjct: 909 TGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFT 942 >gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 867 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R RA + + KS FLA+MSHE+RTPLNAI+GFS++++ + + Sbjct: 622 IQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSP 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K+++ I+ + LL LIN+ILDLSRIE+G + A +L I++E +L Sbjct: 680 EEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMP 739 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + V D ++QV+ NL++NA KFT G + I Sbjct: 740 RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVT-GSITFGYVTNREGYTTIF 798 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + F + S QG GLGL I Q+I+ G + S+L + Sbjct: 799 VEDTGSGISEDAQKHIFERFYKED----SFTQGAGLGLSICQTIVDRLHGSISVSSELGK 854 Query: 465 GVEVIAILP 473 G ++P Sbjct: 855 GTRFEVVIP 863 >gi|98990176|gb|ABF60145.1| two-component histidine kinase [Monilinia fructicola] Length = 1316 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + ++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 692 EMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQ 751 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILDLS+IEA R + E +L V Sbjct: 752 LTLDTDLTQY----QREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTV 807 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L ++A EK +++ ++D S+ V D +RQ+ILNL+ NA+KFT G V + Sbjct: 808 FNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFT-EHGEVSL 866 Query: 392 TVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 T+ + D G GI ++ + +F Q ++ G GLGL I Sbjct: 867 TIQKAVQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSI 926 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ G ++S+ +G Sbjct: 927 SKRLVNLMRGDVWVKSQYGKGSSFYFT 953 >gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 1230 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 20/317 (6%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK--DDLIAE 227 + + + + + +++ Y + + ++ + E+ +L + Sbjct: 774 LTIPIRVLPPWWLSHPAFAAYLLVSLLFVLLLVNHYRIRRQRLEERYAEQERINRELDQK 833 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 ++ + ++ RK AEE AKS FLA+MSHE+RTPL +LG ++ + N+ Sbjct: 834 VKERTAEIEKARKVAEEATKAKSLFLANMSHEIRTPLTGMLGMFSLLAKTKL----NQNQ 889 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + ++ + ++L L+N++LD+ IE+G L E+ + + + RA+ + Sbjct: 890 RSFLDYSRTAAENLNQLVNDLLDVESIESGTLPLHETRFDPEKALAYVYHLFEERAKAQG 949 Query: 348 IEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401 ++ F I+ S V D Q++ NL+SNA+K+T G + + + Sbjct: 950 LDFFLDIEASDPSLEVLGDRNRFIQIVTNLVSNALKYT-ESGSISLKLTIAPAELTQAEA 1008 Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +++ D G GI + + ++ SF Q + +GVGLGL I + ++ G Sbjct: 1009 QRRRSYTVTVSDTGIGIPKDKTGSIFESFTQLDTGYAKSSKGVGLGLAIVKQLVDAMDGT 1068 Query: 456 FLIRSKLREGVEVIAIL 472 + S G L Sbjct: 1069 ISVESSPG-GTSFTVSL 1084 >gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb18] Length = 2333 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q E E +++ E + E+ Sbjct: 1760 VGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1819 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G +E+++ ++ + Y+ I LL LIN Sbjct: 1820 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTSL----DREQNGYVDSIRVCADTLLTLIN 1875 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ +++ ++L D + E + L + + ++ + +D + V D Sbjct: 1876 DILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTIEDLDELDPNLLVMGD 1935 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVL 421 + Q+ +NLLSN+ KFT G V+ I+ + D G GI ++ + Sbjct: 1936 PVRLHQIFMNLLSNSYKFTPQGSVTVNAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLF 1995 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q + + G GLGL I ++I+ GG+ ++S+ G V L V + Sbjct: 1996 RPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFSL----VFSK 2051 Query: 481 IPEDN 485 P+D Sbjct: 2052 APKDA 2056 >gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum WAL-14673] gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum WAL-14673] Length = 801 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 18/282 (6%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++++ + DD+ E E + AE+ N AK+ FL+ MSH++RTP+N I+G + Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427 Query: 272 EV----IELETMGPLN---NETYKEY------IGDIHRSGQHLLNLINEILDLSRIEAGR 318 V ++ E G N +E Y + I S LL+LIN+ILD+S+IE+G+ Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLS 377 +++ ++L D +R +M++ +A+E+ + P + + D + Q++LNLL Sbjct: 488 MKIANREMNLKDAIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547 Query: 378 NAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+K+T G + + V + + I D G G++E + + F Q Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +G GLGL I++ ++ G S+ +G +P Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPSKGTVFTVKIPMK 649 >gi|295094189|emb|CBK83280.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1] Length = 581 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 9/266 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + A ++ FLA+MSHE+RTP+N ILG ++ M Sbjct: 179 VTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMAEDLQ 235 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y++ + LL LIN+ILD+S++EAG+Y++ E + + + + A Sbjct: 236 ADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQVPIAT 295 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +++ ++ V D + ++QV+ LLSNA+KFT+ G V V + I Sbjct: 296 NKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSE-GSVRVKIASMDDGDNKI 354 Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G GI+E + + F Q + G GLGL I + I+ GG ++ Sbjct: 355 KIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNITVQ 414 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485 SK G I +P + D Sbjct: 415 SKEDIGSTFIVEIPLKVIKAADAADE 440 >gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1032 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/479 (19%), Positives = 162/479 (33%), Gaps = 37/479 (7%) Query: 21 DHLGLEYPSKMDFDREIITLHV------ESLFRVSPILPLFVLLVANIGTWFTQNPIFPM 74 + L P + L + + FV+ + Sbjct: 281 NQLVAASPGVAGDEARTGRLLALDPSRDRTKPEQAAFRDGFVIFHGTLDATGWTLAYALP 340 Query: 75 WSLITL--------------AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 W+ + A L + R++ + Sbjct: 341 WTDVVANVAWRASLLLGASLLTIAIMWILLVRFHRRVFASVYARSQRVFDSEALCRSVIE 400 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + L ++ + + +IA S F A Sbjct: 401 TAPIGLGLISRADGHFMLVSPALAEMIARLGSDYRALSAQAVARYDAFIAGGAAGGTLQT 460 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + Y + ++ + L+ +E + Sbjct: 461 DFVLAEADAGAAPLHLEVSACGARYQEIDVLIVAVADVTARRQLV-------QQLEEAVR 513 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A+ N AKS FLA+++HE+RTPLN ILG E+++ + + + + + + Sbjct: 514 AADSANAAKSSFLAAITHEIRTPLNVILGNLELLDRSAL----DASQHGRVQTLRAAASG 569 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLS 359 LL L+++ILD S+IEAG + +I ++ + A+ K + +F +ID Sbjct: 570 LLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAFAPVAKAKGLSLFCEIDASDAQ 629 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415 + D + QV+ NLLSNA+KFTA G V V V S I+++D G GIA Sbjct: 630 RMRGDPTRLGQVLGNLLSNAIKFTAS-GHVLVRVSVASAGCGDAELSIAVEDTGIGIAGA 688 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + +F Q +I G GLGL + + A GG+ + S G +P Sbjct: 689 DRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAMGGRIDVASVPGTGSRFTLTVPL 747 >gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM 12442] gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM 12442] Length = 611 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 375 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 432 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 491 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + IS+ D G GI + + + Sbjct: 492 MDADKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 550 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG +S+ +G + +LP + Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLPMAKEEE 607 >gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS+F++++SHE RTPL +I ++ + G +N++ KE + I + L L+ Sbjct: 385 DELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDD-QKELLQVIQEDSERLNRLV 443 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 NE+LDLSRIE+G+ ++ + +I++ + L+++A+EKNI+I + +L V AD Sbjct: 444 NELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVRADH 503 Query: 366 KGMRQVILNLLSNAVKFTAIGGR--VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + V+ NL+ NA+++T G +++ T+ + S+ DNG GI+E + Sbjct: 504 TKIGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVT-SVTDNGSGISEEYQKIIFDK 562 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I++ I+ HGG + S+L EG L Sbjct: 563 FLQVNGGESTQ-GGAGLGLAISREIVRAHGGDMWVDSELGEGSTFYFTL 610 >gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1380 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 143/277 (51%), Gaps = 2/277 (0%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 F I V ++ E+ + L+ + K FLASMS Sbjct: 842 VFEARIAPSANDEVVMVIRNITERKRIEQTLQQQTDELSIANAELAKAARLKDEFLASMS 901 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPL IL F+E + + G LN + + I + +HLL+LIN+ILDLS+IEAG Sbjct: 902 HELRTPLTGILAFTEALRYDQYGALNQ-AQAQALQQIDENSRHLLDLINDILDLSKIEAG 960 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + ++ ++ + +I + I M+Q AQ K +E+ + + + + AD + ++Q+++NLLS Sbjct: 961 KLTINHQSMLIDEICQASIRMVQKLAQNKQLELLYEPCAADAMLCADSRRLKQMLVNLLS 1020 Query: 378 NAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NAVKFT GGR+ ++V S +++ D G GI +IP + F Q + Sbjct: 1021 NAVKFTPAGGRIGLSVKLDSQFHQVELTVWDTGIGINTQDIPKLFRPFSQLDSKLSRQYA 1080 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL + + HGG+ ++S++ G + +LP Sbjct: 1081 GTGLGLALVYHMANLHGGRVELQSEVGVGSQFRLVLP 1117 >gi|66816785|ref|XP_642392.1| histidine kinase [Dictyostelium discoideum AX4] gi|74841827|sp|Q86CZ2|DHKK_DICDI RecName: Full=Hybrid signal transduction histidine kinase K; AltName: Full=Protein sombrero gi|30230651|gb|AAP20874.1| sombrero SmbA [Dictyostelium discoideum] gi|60470136|gb|EAL68116.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1213 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 154/392 (39%), Gaps = 19/392 (4%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 + LC+ L + + S +I+ + + + LS + + Sbjct: 686 LCFTLCFALTINSYYTGGHQSTIRLLMSTVPIISALVLGRKASIQWSLMVLSIYLLFF-- 743 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 A + H + ++ + F + + + L Q D+ E ++ + Sbjct: 744 --VANLYGHEYVQGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQ 801 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + A E A+ FLA+MSHE+RTPLN ++G + ++ K + Sbjct: 802 LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKAV 858 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 G LL L+N+ILDLS++EA + L + ++ ++ +L +A EKNI + ++ Sbjct: 859 KSCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEV 918 Query: 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ---------YI 403 + S+ D + Q+++NL NA+KFT G ++ + + Sbjct: 919 SDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISF 978 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G G+ + +F Q + G GLGL + ++ G+ + + Sbjct: 979 RVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPD 1038 Query: 464 E-GVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ILP + + + ++K + Sbjct: 1039 CDGSTFWFILPLEEGTDQSMQQMNNGARHKAF 1070 >gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1115 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 137/253 (54%), Gaps = 6/253 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + +AE+ +++ FLA+MSHE+RTP+NA++GFS+++ + Sbjct: 514 ITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLDDVF----E 569 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ I++S + LL+L+N+ILD ++++ G++E SLI+ + + L L+A Sbjct: 570 AEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVVSTLWLQAN 629 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + + P ++ + +RQV+ NL+ NA+KFT +GG V++ VG Sbjct: 630 KKELYLNVSVAPEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGG-VNIKVGVKPSGCIEF 688 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +I D G G+ + ++ V +FGQ ++ G GLG I++ ++ GG+ S Sbjct: 689 AIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGKISATSTYG 748 Query: 464 EGVEVIAILPNTR 476 EG LP Sbjct: 749 EGSCFSFTLPLAP 761 >gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1324 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 19/282 (6%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E I + ++ + +RAE + AK FLA+MSHE+RTPLNA+LG+ +++ + Sbjct: 786 VEIVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADR 845 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + +E + + S LL++IN+ILD S+IEAGR EL L+ + + Sbjct: 846 L----EPRQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKE 901 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ A+ K +++ I ++ +V D +RQV+ NL++NAVK+T GG V + V Sbjct: 902 QEVLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGG-VRLGVAIAD 960 Query: 398 GR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 ++ D G GI + T+ SF Q + + G GLGL I + Sbjct: 961 APCAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICR 1020 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486 + GG + S +G P RV D Sbjct: 1021 RLAGLMGGTISLESTPGQGSAFRLECPFDAARVEPASVADTP 1062 >gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] Length = 1126 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 155/362 (42%), Gaps = 10/362 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 G W L + + ++IA+ +++ L ++ + + Sbjct: 323 VDGHLWGLSLELPEKEAFARIQQLEQIFVIAMIIAIVCVVIASHFLSNSITAPL--LRLT 380 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + + ++ + + +S + + +++ ELE + Sbjct: 381 WAAERVSAGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKDQN---EELEANLA 437 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E + K FLA+ SHELRTPL+ ++G +E + GP++ +++ + Sbjct: 438 TIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEI 496 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SGQ L +L+N++LD ++ G ++++ L + + Q K+I I + Sbjct: 497 IINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQ 556 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 +D SL V+ DE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI Sbjct: 557 VDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIP 614 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E+ + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 615 ADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674 Query: 474 NT 475 Sbjct: 675 LA 676 >gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] Length = 927 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 40/461 (8%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97 ++L +V + + +V +W TL L ++ Sbjct: 211 LSLFFSIREKVYLLYVCWSAVVTLFMAVLHGYAHRYLWPHSTLISQYMIHYLLPLIVLLP 270 Query: 98 IK-----IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + Q+ +G+ T+L L P T + I SA LL+ SI Sbjct: 271 PLFTLHFLSLREKAPRLAMWLQMLVGIG-TVLFLAAPFTSRTFLIPISVSAILLMDFSIF 329 Query: 153 ALS---------NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 + + + + F A++ + ++ + + Sbjct: 330 FVGLIRTRAGDPDARIFTIAWSCFIVGAAAMALNKYGVVPRNSLTENLVQIGVFLEVVLL 389 Query: 204 TYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L + ++ ++ +D IAE+E K+ + N AKS FLA+MSHE+R Sbjct: 390 SLALARRINRLKEAHSDSVRDRAIAEMEAFKAGAR---------NHAKSEFLATMSHEIR 440 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N I+G ++++ +M +Y+G I++S Q LL +IN+ILD S+IE+G+ EL Sbjct: 441 TPMNGIMGMTDLLRRTSMTH----QQAQYVGTIYQSTQSLLTVINDILDYSKIESGKLEL 496 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 I+L +IV +C+ + LR+ EK++ ++ ID + + D ++Q+I NLLSNA Sbjct: 497 DYQPIALENIVDDCVRLFALRSSEKSLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAF 556 Query: 381 KFTAIGGRVHVTVGWTSG------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 KFT G V + V I + D G G+ EG+ ++ +F ++ K Sbjct: 557 KFTDR-GHVALHVNLKQPVNNKGMCVLMIEVVDTGIGLDEGQQSSLFQAFS--DLSAKGK 613 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I + ++ GG + S L G LP Sbjct: 614 HNGAGLGLVICKRLIELLGGDIGVSSSLGRGATFWLSLPVE 654 >gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 680 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 14/270 (5%) Query: 226 AELEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +E A+ + ++ R+ AE N K FLA +SHELRTPL ++LG+S+++ + + Sbjct: 270 SEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKAT 329 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I R+ + LI +ILD+SRI G+ L+ S ++LI +V + ++ A Sbjct: 330 A---RALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVRPLAD 386 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----- 399 KN+ I +D +LS V D ++Q++ NLL+NA+KFT G+V + + +G Sbjct: 387 TKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGELSDDL 446 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D G GIA +P V F Q + G+GLGL I + ++ H G L Sbjct: 447 THAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNGTILA 506 Query: 459 RSK-LREGVEVIAILPN---TRVLNFIPED 484 S + +G P R P + Sbjct: 507 ESPGVGKGATFTVRFPLIQENRETRPTPTE 536 >gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae 642] Length = 645 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 152/357 (42%), Gaps = 20/357 (5%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L ++ A+ LS + + +AI Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMGALMFAFLLARSLALSLSRPISDMGEALKAIQQG 211 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + TR+ A Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIHTREEA 260 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--S 360 +IN+ILD SRIE ++ +L ++V A ++N+ + I P L + Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLEGMN 376 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEI 417 V D +RQ+++NL+ NA+KFT G V V + + ++D+G GI + Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQGKVCVEVRWAMLDAERLHFTCAVQDSGIGIDAERL 436 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ +F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 437 ESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 493 >gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13] gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 1036 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 770 LRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 829 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 830 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 889 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 890 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 949 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 950 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1009 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1010 AQFAIDSNPGQGTVVEIVFPPTRVL 1034 >gi|160934183|ref|ZP_02081570.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753] gi|156866856|gb|EDO60228.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753] Length = 1281 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 14/273 (5%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDE------TRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +L + + + A+ +LAK++FL+ MSHE+RTP+NAI Sbjct: 864 VLESHEKNYLWTEAQRKTLQELTQIISTFVAKAHADAVSLAKTQFLSRMSHEIRTPMNAI 923 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 G + + + + E + + I RS Q+LL LIN+IL++SRIE+G+ E+S + Sbjct: 924 AGMTTIAKTSL---DHREKVLDCLNKIERSNQYLLGLINDILEVSRIESGKIEISPEWVD 980 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ + R+ M +A+ KNI + + + D Q+ +NL+ NA+KFT G Sbjct: 981 MVTVERQLNEMFASQAKAKNITLLFQRQYEEKYVFYLDTLRFNQIFINLIGNAIKFTRPG 1040 Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V S SI+D G GIA I + SF QGS G GLGL Sbjct: 1041 GTVIGRARLESFEKDIAYIRFSIEDTGIGIAPEAIERIFDSFEQGSAKTAQEYGGTGLGL 1100 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I+ ++ GG+ ++S+L EG E LP Sbjct: 1101 TISSHLVQLMGGKLEVKSRLGEGSEFYFTLPLK 1133 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length = 1382 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 132/355 (37%), Gaps = 9/355 (2%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L+ P AL+ + Sbjct: 221 LVEATGLAAGHPAAPATLSPGDPAAPWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPA 280 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE--KDDLIAELEVAKSLSDETRK 240 L + L F +++ E L + A+S + R+ Sbjct: 281 EALLVPLRQQGGAPYGFLVAGLNR-YRALDDGYRGFVELTAGHLATGIASARSYQAQQRR 339 Query: 241 RAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 E E + AK+ F +++SHE RTPL I+G + + G +E + + I R+G Sbjct: 340 AEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELRGRLQGA--DEQVRTELDVIRRNG 397 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L L+N +LD SRIEAGR + + L + + + + + + P Sbjct: 398 LRLGKLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGLSFEVDCPPLP 457 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D +V+LNLLSNA+KFT G + V + G + I D G G+ E+P Sbjct: 458 EPVHLDRGMWEKVVLNLLSNALKFTFD-GTIRVEL-RADGDAAVLRISDTGIGVPADEMP 515 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A +++G G+GL + Q ++ HGG S + G LP Sbjct: 516 RLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFTIRLP 570 >gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 607 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 5/232 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK-EYIGDIHRSGQHL 301 E+ + F+A++SHELRTPL + + E ++ G +N+ ++ + + Sbjct: 371 EKIEQERREFVANVSHELRTPLTTMKSYLEALDD---GAMNDPNLAPRFLHVTQNETERM 427 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 + L+N++L LS+I+ Y+L+ S + L + + I ++ A+EK+I +KI + V Sbjct: 428 IRLVNDLLQLSKIDTHDYKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKITKHATFV 487 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QVI N+LSNA+K++ GG V +T+ G +SI D G GI + + Sbjct: 488 EIDQDKLTQVIDNILSNAMKYSPEGGDVTITL-LHQGHNVRVSISDQGMGIPKESQTKIF 546 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A + G GLGL IA+ ++ HGG+ + SK + G + LP Sbjct: 547 DRFYRVDKARARSVGGTGLGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598 >gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 955 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 12/254 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 555 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNS--- 611 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 +EY+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 612 -EEQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 670 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + + V D + QV+ N ++NA+K+T G + +G+ Sbjct: 671 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS---IEMGYEVMDT 727 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G + +KD G GI E + V F + QG GLGL I ++I + GG Sbjct: 728 GIRLYVKDTGIGIPEEKKNKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFE 783 Query: 460 SKLREGVEVIAILP 473 SK EG AI+P Sbjct: 784 SKYHEGSLFWAIIP 797 >gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1023 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 12/254 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 623 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNS--- 679 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 +EY+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 680 -EEQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 738 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 R + + + V D + QV+ N ++NA+K+T G + +G+ Sbjct: 739 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS---IEMGYEVMDT 795 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 G + +KD G GI E + V F + QG GLGL I ++I + GG Sbjct: 796 GIRLYVKDTGIGIPEEKKNKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFE 851 Query: 460 SKLREGVEVIAILP 473 SK EG AI+P Sbjct: 852 SKYHEGSLFWAIIP 865 >gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 631 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 6/257 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +E+ A R+ AE + K FLA++SHELRTPLNA+LG+++++ + Sbjct: 222 SERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRA 281 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + +K I I RS + ++LI+++LD+S I +G+ L + L D++ Sbjct: 282 Y---DEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 338 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 ++ A++KNI I + P + + D ++QV NLL+NAVKFT GG + ++V Sbjct: 339 IEPMARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPE 397 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI +P + F Q ++ G+GLGL IA+ ++ H G+ Sbjct: 398 GVVA-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITA 456 Query: 459 RSK-LREGVEVIAILPN 474 S G + LP Sbjct: 457 ASSGADRGTTMAVSLPL 473 >gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 2099 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 197/490 (40%), Gaps = 29/490 (5%) Query: 14 LLISPTGDHLGLEYPSKMDFDREIITLHVE---SLFRVSPILPLFVLLVANIGTWFTQNP 70 + T + + K + R L + +L + L L+ A+ G + + Sbjct: 1179 DNLRLTTERNTEQDWLKTNLARFTNMLQGQRDLTLVGKLLLSELAPLVSAHQGVIYQVDA 1238 Query: 71 --IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE 128 P SL+++ + ++ +G+ +LV + + + Sbjct: 1239 DEEQPFLSLLSVYAQGVEAAHPPRLDFGQGLVGQCASDARRILVTDLPENVVPISSGVFT 1298 Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 + L ++ + + +++ F FL + + +I + + Sbjct: 1299 TLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLDQLTTSIGIVLNSIEATMQTE-G 1357 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244 L + L ++N ++ + ++ E+E ++ R+ EE Sbjct: 1358 LLKQSQKLAAELQTQQRELQQTNEQLGQKAQQLEERNVEVEAKNQEIEQARRALEEKATE 1417 Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FLA+MSHELRTPLN+IL + + G L+ + E+ IH +G L Sbjct: 1418 LALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQV-EFAKTIHGAGTDL 1476 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 LNLI++ILDLS+IE+G + I + +++ + A+ +++ +I ++ Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRSLSFAVEIGGDVTKS 1536 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKD 407 + D K ++Q++ NLLSNA KFTA GG V + V + + D Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVALAASGWSPDHPSLRHAPSVIAFEVVD 1595 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + +F Q + G GLGL I++ + GG+ +RS G Sbjct: 1596 TGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGVGST 1655 Query: 468 VIAILPNTRV 477 + LP T V Sbjct: 1656 FVLYLPLTYV 1665 >gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345] gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345] Length = 806 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 12/252 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R++ ++ N AKS FLA+MSHE+RTPLN I+G +E++ + + K+Y+ I+ S Sbjct: 307 AREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKDYLATINSS 362 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 Q LL LIN+ILDLS+IE+G E ++ +++ + ++ +AQ+KNI + I Sbjct: 363 SQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIVLRIIIGDE 422 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIA 413 + + + ADE+ +RQ+++NL SNA+KFT G ++ V S+KD G GI Sbjct: 423 VPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSVKDTGVGID 482 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472 + + + F Q G GLGL IA ++ GG+ +I S G E IL Sbjct: 483 KNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMISSDKGVGSEFHFILA 542 Query: 473 -PN--TRVLNFI 481 P RV + Sbjct: 543 FPKQEERVCERL 554 >gi|114570669|ref|YP_757349.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341131|gb|ABI66411.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 607 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 99/470 (21%), Positives = 175/470 (37%), Gaps = 27/470 (5%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLA 81 + + D + ++ + + ++ + P L++ A Sbjct: 5 RIDRWTGADPQIDFDYAVKSRIAVAYTAIFTLMGLVNAGVLAFVLDGRPGMAELGLVSAA 64 Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 + A +G ++ ++ I + L + W P T I Sbjct: 65 IAATVGIVGLRLRRPNLTII-----VMIALASLVLYAAAWANRGSFPPA--TLYLPGIVL 117 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 A + + ++ L L + + L L + + + Sbjct: 118 GAYIAWGARAAFIAILPLAAYFGLILGTADYSSTGPLGFRPTELLNMLVAAGSLSCVWIV 177 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + E A + A++ + AKS F+A+MSHE+R Sbjct: 178 LFGSSFRSATTDAQKALTE----------ANQQLETALISAQQASRAKSDFIANMSHEVR 227 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN +LG + V++ + ++ +G I SG+ LL+L+N+ILDLS+IEA EL Sbjct: 228 TPLNGVLGMTNVLQ---ADATLTDEHRRSLGLIDDSGKALLDLLNDILDLSKIEADAVEL 284 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L ++ +L+A+ K + + + V D +RQVI NLL NAV Sbjct: 285 ETRTFDLAALIHNTSEHWRLQAETKGVALTVSNQLGEPAFVTGDPIRLRQVINNLLGNAV 344 Query: 381 KFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 KFT GR+ V++ ++++D G GI + + F Q + Sbjct: 345 KFTH-NGRISVSLAAVGEVRDGKTRVRLAVRDTGIGIPGNKQAAIFDPFSQVDATVTRRY 403 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I + +++ G+ + SK+ G LP RV PE Sbjct: 404 GGTGLGLAICRRLVSKMDGKITLSSKMGRGSTFTVDLPLERVAASEPEAA 453 >gi|238922202|ref|YP_002935716.1| hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750] gi|238873874|gb|ACR73582.1| Hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750] Length = 734 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 14/312 (4%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSR 251 + + +K+ Q E A+ + E +R E+ N AK+ Sbjct: 301 FVAYMFAVLVLNMMRWKTVQGYEREQYEMQQQYAKTLQEKNEQLQEAVRREEKANAAKTD 360 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FL+ M+H++RTPLN I+G ++ ++ + + + + HLL+LIN+IL + Sbjct: 361 FLSRMTHDIRTPLNGIIG---LLRIDESHKEDTDMINTNRKKMSIAANHLLSLINDILQM 417 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS---LSSVWADEKGM 368 S++E G+ ELS + L + ++ I +++ RA + + + V+ + Sbjct: 418 SKLEDGQIELSREIVDLNKLAKDIITIVEQRASDSGVNLKYDKVAGKVMYPYVYGSPLHL 477 Query: 369 RQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSF 424 RQ+ LN+ +N +K+ GG V T + D G G++E + + F Sbjct: 478 RQLFLNIYANCIKYNKAGGMVSTYFKCIGTQDGIVTYEWTVTDTGIGMSEEFLEHIFEPF 537 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP---NTRVLNFI 481 Q +S QG GLG+ I +S++ G + SK EG + +P ++V Sbjct: 538 VQEKTDARSVYQGTGLGMAIVKSLVDKMNGTISVTSKEGEGSTFVIRIPFEIASKVEEIT 597 Query: 482 PEDNHESTQYKC 493 + S Sbjct: 598 DDKEKSSNDISG 609 >gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] Length = 755 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 12/248 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E + +AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + K Sbjct: 376 EKMAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDS----DDPDEKK 431 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY I + LL LIN+ILDLS+IE+G + +L + E +M++ + ++ Sbjct: 432 EYWHIIESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIPNADV 491 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKD 407 E+ Q ++ D ++QV +N L+NAVK+T G ++ +G+ G ++D Sbjct: 492 ELVQDNPCPECWIFLDSNRLKQVWMNFLTNAVKYTRSG---YIRMGYSVEKDGIRFYVED 548 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + V F + QG GLGL I+++I+ GG+ S+ G Sbjct: 549 TGTGIPKELQDRVFGRFQKL----NEFVQGTGLGLAISRAIVEAAGGEIGFTSEQGIGST 604 Query: 468 VIAILPNT 475 A +P Sbjct: 605 FWAWVPCE 612 >gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 649 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 10/275 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 QAE + + E + + ++ AE N K FLA++SHELRTPLNAI+G+ +++ Sbjct: 251 QAELERIQLLHE-----ARQAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQLLRS- 304 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G LN + + + I R+ LI ++LD+SRI G +L I++I ++ I Sbjct: 305 --GTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSSID 362 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A+ KNI I ++ + D++ ++QV NLL NAVKFT I G + + G + Sbjct: 363 TVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGEEN 422 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + +I I D G GI+ +P + F Q + + G+GLGL I + I+ HGG Sbjct: 423 NQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGGSV 482 Query: 457 LIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ + +G LP + + + ++Q Sbjct: 483 MAESEGIDKGSTFTVELPVIQSVRNQETKSTSASQ 517 >gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 796 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 7/251 (2%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L ++ + R A N AKS F+A+MSHE+RTPLN ++G + + + Sbjct: 53 LGDMVKDRTRQLELARDEAMAANKAKSLFIANMSHEIRTPLNGVIGMLQAMMQGDL---- 108 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + K SG+ LL +IN++LD S++EA + L SL ++ C ++ +A Sbjct: 109 SREQKARAKTALTSGKLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQA 168 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 +K + + + L + D ++Q+I NLLSNAVKFT G V + R Sbjct: 169 SDKGLTLTLTLAAHLPDQIMGDPTRLKQIICNLLSNAVKFTKR-GEVSLYCYPVEDR-LV 226 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI + F Q + G GLGL I+ ++ GG+ +RS+ Sbjct: 227 FGVADTGVGIPADRQQQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEP 286 Query: 463 REGVEVIAILP 473 G + LP Sbjct: 287 GVGADFYFALP 297 >gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 576 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 409 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 LIDGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 569 >gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1022 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E Y+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R +++ S+ V D+ + QV+ N ++NA+K+T G + + Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI E + V F + QG GLGL I ++I + GG S Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851 Query: 461 KLREGVEVIAILP 473 + G A+LP Sbjct: 852 EYSRGSLFWAVLP 864 >gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1022 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E Y+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R +++ S+ V D+ + QV+ N ++NA+K+T G + + Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI E + V F + QG GLGL I ++I + GG S Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851 Query: 461 KLREGVEVIAILP 473 + G A+LP Sbjct: 852 EYSRGSLFWAVLP 864 >gi|260778949|ref|ZP_05887841.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605113|gb|EEX31408.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 786 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 134/268 (50%), Gaps = 6/268 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+EL+ + AE+ N AKS FLA+MSHELRTP+N +LG +++I+ E+ Sbjct: 242 ISELKRNNLAYQVATENAEKANEAKSIFLATMSHELRTPMNGVLGIAQIIKDESQELET- 300 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K+ + SGQHL+ ++N+ILD S++E G+ EL S+ ++V L +A Sbjct: 301 ---KKQAQILIDSGQHLMTILNDILDFSKVEQGKLELEIHPFSIGELVLSLEKTLGPQAA 357 Query: 345 EKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 K ++ + P+ + D RQ++ NL+ NA+KFT G V + + Sbjct: 358 NKGLKFVIQNKVPANIELHGDPARTRQILFNLVGNAIKFTQTGKIEVEFALDTSIPPNVC 417 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +S+ D+G GI ++ T+ T F Q ++ G GLGL I + ++ GG+ + S+ Sbjct: 418 MSVTDSGIGIEREKLDTIFTPFEQAELSTTRKFGGTGLGLSIVKRLVEMMGGKVSVFSQP 477 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQ 490 G + +P I E + + Sbjct: 478 NVGTQFTLTIPFELKELEISEAQLQPSD 505 >gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1022 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E Y+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R +++ S+ V D+ + QV+ N ++NA+K+T G + + Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI E + V F + QG GLGL I ++I + GG S Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851 Query: 461 KLREGVEVIAILP 473 + G A+LP Sbjct: 852 EYSRGSLFWAVLP 864 >gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1022 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 10/253 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E Y+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R +++ S+ V D+ + QV+ N ++NA+K+T G + + Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVVDAG- 795 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI E + V F + QG GLGL I ++I + GG S Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851 Query: 461 KLREGVEVIAILP 473 + G A+LP Sbjct: 852 EYSRGSLFWAVLP 864 >gi|189183162|ref|YP_001936947.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda] gi|189179933|dbj|BAG39713.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda] Length = 503 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 15/311 (4%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 ++F + + Q + ++ L +L +L FF I + Sbjct: 199 TVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIKSSISNVQ----------- 247 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 +I A ++ R++AE+EN+AK++FLA++SHELRTPL+AI+G +E+I + + Sbjct: 248 QIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIILSNSHCKI 307 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y YI DIH SG+HLL +IN+ILD S+ A + + A+ L + + ++ + Sbjct: 308 N---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASSLRLMYTK 364 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401 A++ I++ K P + AD K ++Q + NLLSN++KFT G + + + Sbjct: 365 AKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISMNELKSLV 424 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 YI + D G GIAE +IP L+SF Q + + + +G GLGLP+ + ++ G F I S Sbjct: 425 YIKVIDTGIGIAEHDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEGDFEITSN 484 Query: 462 LREGVEVIAIL 472 + +G V Sbjct: 485 IGQGTTVTITF 495 >gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9] Length = 923 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 256 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 313 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 314 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPIRLWEAYRHAVGRSS 373 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 374 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 426 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 427 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 482 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 483 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 542 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 543 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 601 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 602 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 661 Query: 469 IAILPNTRV 477 LP Sbjct: 662 TVALPLREA 670 >gi|164657947|ref|XP_001730099.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966] gi|159103994|gb|EDP42885.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966] Length = 1333 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 10/262 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + ++ L + + R+ AE N +KS FLA+MSHE+RTP+N I+G + + Sbjct: 762 SLKTKINQMVYSLRDSIQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTSLTL 821 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + T +E + + +LL +I++ILD+S+IEAGR + E SL IV Sbjct: 822 ETEL----SRTQRENLVTVSTLASNLLAIIDDILDISKIEAGRMNIEEIPFSLRGIVFSV 877 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L +RA +K + + ++ P++ + D ++Q+I NL+ NAVKFT GG V + Sbjct: 878 LKTLSVRAAQKKLNLVYEVAPNVPDPLIGDALRLKQIITNLIGNAVKFTESGGIVALRCK 937 Query: 395 WT-----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 D+G GI + ++ + +F Q + G GLGL I++ ++ Sbjct: 938 LNSAPGAPETVLEFCASDSGIGIKQDKLDMIFDTFCQADGSTTRKYGGTGLGLSISRRLV 997 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG +RS +G + Sbjct: 998 NLMGGDMWVRSHFGKGSDFFFT 1019 >gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] Length = 1121 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 22/365 (6%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-----------ISLAGM 192 ++A S + +++ A+ S ++A+ + + Sbjct: 555 AWVVAKLNSRVGHYLAIQAMLASVIGGILAIIYFHARFESPSHGEAIRGTLWTLYFVLMI 614 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSR 251 + +++ + + + Q I + + + ++ AE NLAKSR Sbjct: 615 IVGVVAWLFVLAQESRRVAQEESQRQTTLLMREIEAHKRTDAKLQKAKEVAEAANLAKSR 674 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 ++ +SHELRTPLNAILG+++++E +T P ++ I + RS +HL LI+ +LD+ Sbjct: 675 YVVGISHELRTPLNAILGYAQLLERDTSIP---AHRRDAIRVVRRSSEHLSGLIDGLLDI 731 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEAGR L + + D++ + + M +L+A + IE L V+ DEK +RQ Sbjct: 732 SKIEAGRLHLYRDEVRIRDLLDQLVDMFRLQASARGIEFIHMRSERLPAVVFTDEKRLRQ 791 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +++NLLSNA+KFTA G V + V + + ++D G GIA E + F +GS Sbjct: 792 ILINLLSNAIKFTAK-GHVALRVTYR-NQVAEFEVEDTGIGIAPEERGRIFEPFERGSRG 849 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G+GLGL I + + GG+ ++S+L +G L +L+ P + Sbjct: 850 GAFNAIGIGLGLTITKLLTEIMGGEISLKSELDKGSTFKVRL----LLSEAPGREAAPPE 905 Query: 491 YKCYA 495 + A Sbjct: 906 QRIVA 910 >gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] Length = 774 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 162/341 (47%), Gaps = 15/341 (4%) Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI 214 L + +V +T + + G + L F + LF + + Sbjct: 161 VAATLEEIRIATNEFLVRTNATISEARADARNDVFQGQMLAFLFMFAIVVAALFLAFHML 220 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L + K A + ++ + AE N AKS FLA++ HE+RTPLN ILG +E++ Sbjct: 221 LQVRIVKQTREGMTRAA-AEFEKAYEAAEAGNKAKSAFLATIGHEIRTPLNGILGMAELL 279 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + + Y+ I RSG+ LL +INEILD ++IE G + E L D+VR+ Sbjct: 280 AQKPLPAEESG----YVRTITRSGRALLEMINEILDYAKIEYGSQQSEEIIFRLDDLVRD 335 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR-VHV 391 +++ + E+N ++ IDP+L + + +D +++++LNLLSNAVKFT G + V Sbjct: 336 TAAVVEGQVLEQNNDLKLHIDPALDGAFIKSDPTRLKRILLNLLSNAVKFTENGSVWLEV 395 Query: 392 TVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 T G + +S++D+G GIA + T+F Q +I G GLGL I + I+ Sbjct: 396 TAGNVTDETLELNVSVRDSGIGIASDAQKQLFTAFHQVDSSISRRFGGTGLGLAICKQIV 455 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRV-----LNFIPEDN 485 G + S EG +P R + PE++ Sbjct: 456 EAMQGTIGVSSTPGEGATFSFTVPVQRAKAPACIPGAPEED 496 >gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 880 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 16/247 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ F+ +MSHELRTP+ AI GF++++ + +G L N+T +E++ I+ + + ++N Sbjct: 631 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYNNTERMIN 689 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++L++++IE+G EL ++ L + + I LQ ++ ++ I P L + A Sbjct: 690 LINDVLEITKIESGSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIPPGLPLIRA 749 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------------TSGRGQYISIKDN 408 D + Q++ ++L NAVK+T GG++ + T+ R +SI D Sbjct: 750 DAMRLHQILYHVLLNAVKYTPAGGKITIAAREILNVDFPEPVRSILHTNHRYLLLSISDT 809 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++P + F + +K G GLGL I + ++ GG + S + +G Sbjct: 810 GVGIRPEDLPRIFDRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVGQGSTF 869 Query: 469 IAILPNT 475 LP Sbjct: 870 YIALPVA 876 >gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-32] gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-12] Length = 1160 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 99/420 (23%), Positives = 182/420 (43%), Gaps = 25/420 (5%) Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 + T + + +L + ++ +I + L + Sbjct: 556 IAFCPVYTGFICSLCCTLDSRCHDACKPETTRLTGQIKKVAYSFLPRS------LAFHIS 609 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + SA L A I + +S + + + + L + Sbjct: 610 GVIGRYFLIFSALLFCAGIILYALYQNIVKFPHISSYQLSIIFWKTFFLLSAPLTV---- 665 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKS 250 +++F ++ +++ Q I + + ++RAE NL+KS Sbjct: 666 -----IAWFLVLSQRSYRAAENENRFQTRLLMKEIRAHKRTDQELKKAKERAEAANLSKS 720 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 RF+ +SHE+RTPLN+I+G++ ++E + + P E E + I RS +HL LI + D Sbjct: 721 RFMVGVSHEIRTPLNSIMGYAYLLENKMLAP---EKQNEGLKVIQRSAEHLSGLIEGLFD 777 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 +S+IEAGR ++ I+ + ++ ML+ + K + + I +L V D++ +R Sbjct: 778 ISKIEAGRLDILHDKINFQEFLKHLTGMLRFQVNNKKLVFIEDIPENLPEYVMTDQRRLR 837 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+++NLLSNA+KFT G V +V W I+D G GI + +I + F + S Sbjct: 838 QILINLLSNAIKFTPS-GSVSFSVRWNME-IATFEIRDTGIGIPDSDIERIQEPFQRSSH 895 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 QG GLGL I + ++ GG+F I+S + +G L ++ + ++N ST Sbjct: 896 PDSHRIQGTGLGLTITRLLVQILGGEFTIKSTVGQGTTCRVRLMLSQTES---KENPPST 952 >gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 675 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 91/439 (20%), Positives = 162/439 (36%), Gaps = 22/439 (5%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + L L ++ + + L + E Sbjct: 94 VCYAALFAGLVALQISPLAQPLLPTQLTVFALGTLLICVLCEQLRRARAGAERRARAETQ 153 Query: 105 VWRIWLLVGQIAIGLCWTLLTL-----VEPGTWTPEYLTIYKSATLLIALSISALSNFML 159 + +L + L ++ + + L Sbjct: 154 QRVSQQRLLAALQASPISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRAASRL 213 Query: 160 P---YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 V + P V + + + V+ + L +T + Sbjct: 214 TEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDIT----- 268 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 E A R+ AE + K FLA++SHELRTPLNA+LG+++++ Sbjct: 269 ---EHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA- 324 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 M P + ++ + I RS + ++LI+++LD+S I +G+ L + L D++ Sbjct: 325 --MRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ++ A++K I I + P + + D ++QV NLL+NAVKFT GG + V V Sbjct: 383 ETIEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQAL 441 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++D G GI +P V F Q ++ G+GLGL IA+ ++ H G+ Sbjct: 442 PEGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 457 LIRSK-LREGVEVIAILPN 474 S G + LP Sbjct: 501 TAASNGANLGTTMAVTLPL 519 >gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus] Length = 2370 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 18/324 (5%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + L + + + + + + + +A+ A+ + E Sbjct: 1811 FTERNTQVLRLLVNQISISLANALLFKEVERVSASNEAMLEMQKRALAQARAAEIKAKEA 1870 Query: 239 RKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 A EE AKS FLA++SHELRTPLN ++G SE+++ + N Y Sbjct: 1871 EANAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQSGYA 1926 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I LL++IN++LD S++EAG+ + E ISL + + E + L E+ ++ Sbjct: 1927 DSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTI 1986 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 ++++ V D + Q+++NLLSN+ KFT G V V S+ Sbjct: 1987 EQLELDPEMLVMGDPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDQETSEWADVTCSVI 2045 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREG 465 D G GI + + + F Q + + G GLGL I ++++ N G + S+ +G Sbjct: 2046 DTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKG 2105 Query: 466 VEVIAILPNTRVLNFIPEDNHEST 489 V L +V D + + Sbjct: 2106 TTVTFSLRFKKVPKARAGDQQQRS 2129 >gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1158 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 162/357 (45%), Gaps = 5/357 (1%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ L P + + + ++I A + + + L Q + Sbjct: 360 GVIELGFMRKPEPLDMEFLSLISGNLGIAIEAALSRQRLQDLLAETQQLNEELQVQQEEL 419 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + +L + + L ++N K+ D+ A L+ ++ E Sbjct: 420 RTSNEELEEQSRILEESQATLENQKAELEQTNDKLAEQALRLDERNAALQEVQAQLRERA 479 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + E + KS FLA+MSHELRTPLN+ L ++++ G L+ E K + I+ +G Sbjct: 480 EDLERASQYKSEFLANMSHELRTPLNSSLILAKLLADNREGNLSEEQVK-FAQTIYSAGN 538 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LLNLIN+ILD+S++EAG+ EL +++ + + + AQ+K ++ I P Sbjct: 539 DLLNLINDILDISKVEAGKLELKPQELAVQHLANSLQAVFEPLAQQKKLDFSIDISPQTP 598 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +++ D + + Q++ NLLSNA+KFT G + + + + ++KD+G GI Sbjct: 599 DTIYTDRQRLEQILKNLLSNAIKFTDK-GSISLHISNNAHDQISFTVKDSGIGIDPSMHE 657 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q G GLGL I++++ A GG + S EG ++P Sbjct: 658 AIFAPFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSINVESARGEGSSFTLLVPRQ 714 >gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 811 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 14/250 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++ ++++ A+ N AKS FLA+MSHELRTPLN ILG +++++ + P E + +I Sbjct: 324 QAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSKLP---EQEQHHI 380 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + G HLL LIN+ILDL++IEA + EL + ++ + Q+RA +K+I Sbjct: 381 NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFI 440 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQY 402 + +L V D K +RQV+LNLL NA+KFT G+V + V Sbjct: 441 YEPASNLPTWVHIDAKRLRQVLLNLLGNAIKFT-DHGQVKLKVETIEESSNQKPVNHRIR 499 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I+D G GI + E+ + F Q K +G GLGL I + ++ G + S++ Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEK-KRQTEGTGLGLAITRQLVQMMGSDIHVTSQV 558 Query: 463 REGVEVIAIL 472 +G L Sbjct: 559 GKGSTFWFEL 568 >gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] Length = 2331 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 16/293 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRA---EEEN 246 ++ A +F + +N ++ Q E E +++ E + E+ Sbjct: 1760 IGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKVAEAEAKHNVKLKEDAA 1819 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+N ++G +E+++ + + Y+ I LL LIN Sbjct: 1820 KAKSIFLANVSHDLRTPMNGVIGLTELLKKTNL----DREQNGYVESIRVCADTLLTLIN 1875 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ +++ ++L D + E + L + + ++ + +D + V D Sbjct: 1876 DILDFSKLEAGKMKVAAIPLNLRDTIMEAVRALCFTHRHRGLQTIEDLDELDPNLLVMGD 1935 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V + I I D G GI ++ + Sbjct: 1936 PVRLHQIFMNLLSNSYKFTPQ-GSVTVKANASDEEDGRIRITCKVVDTGIGIPGEQLVRL 1994 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAIL 472 F Q + + G GLGL I ++I+ GG+ ++S+ G V L Sbjct: 1995 FRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2047 >gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 641 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 168/371 (45%), Gaps = 15/371 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY-----AVFLSFFPVVVALSTQAIMS 181 + G + +S+ + L+IS+LS + P A+F +++A ++ Sbjct: 265 LVAGYSSLPSPVTGESSQKWVVLAISSLSQALAPLQQIWEAIFYLISGLLLAYLVAIVLI 324 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDET 238 L L + AL+ + + N I L LE + ++ Sbjct: 325 ARDLARPLEKLRDYALNIQKIPSQKIRPQNFNIREINQLASSLEEMLERLRLWGEEIVKS 384 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE + K++FLA+ SHELRTPLN I+G + + E KEY+ ++ Sbjct: 385 RQEAENASQLKNQFLANTSHELRTPLNGIIGSIRCVMDGFC--NSEEEEKEYLQQADKAA 442 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 HLL +I++IL +++IEAG+ + + L I+ E + + Q K++++ P Sbjct: 443 VHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQIINEVVSLQTASLQGKHLKLNLLFCPEN 502 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V+AD ++QVILN++SN++KFT G + + + I+I D G GI + Sbjct: 503 PIVYADPTKLKQVILNVISNSIKFTET-GTISLITHLEYPQ-AIITIVDTGIGIDPQQQL 560 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN--T 475 + F + G GLGL I+++ M GG I S+ G V ILP Sbjct: 561 KLFRPFVMIDGSTTRKFSGTGLGLAISKNFMKVMGGDITISSQGQGLGTTVEIILPLVGE 620 Query: 476 RVLNFIPEDNH 486 + L+ PE+N Sbjct: 621 KKLDSTPEENS 631 >gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1165 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 3/289 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + + L ++NV++ + AEL A+ R E+ + KS F Sbjct: 432 LVESQARLEAQQAELEQTNVQLEDYAKRLERQKAELLSAQGELAANAARLEQSSRYKSEF 491 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L + +++ G L +E + Y IH S LL LIN+ILDLS Sbjct: 492 LANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR-YAETIHASNSDLLVLINDILDLS 550 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +++ +++ M + A K+++ + P + ++ D + + Q+ Sbjct: 551 KVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQFSVERAPGVPDMIFTDGQRITQI 610 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNA+KFT G V +TV + ++D G GIA ++ + +F Q + Sbjct: 611 LRNLLSNALKFTER-GEVALTVAASDADTLRFDVRDTGIGIAADKLELIFEAFQQADGST 669 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I++ GG+ + S+ +G LP + Sbjct: 670 SRNYGGSGLGLSISREFARLLGGRVSVASEPGKGSVFTLWLPLQGSVEA 718 >gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 607 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 3/235 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + F+A++SHELRTPL I + E + + E + ++ + ++ Sbjct: 370 QRLEQQRREFVANVSHELRTPLTTIKSYVEALLDGAV--EEPELSQRFLKVTSSETERMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LSR ++ L L ++ + ++++ +++ + L V+ Sbjct: 428 RLVNDLLQLSRFDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVY 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421 D + QV+ NLLSNA+K+T GG V + + + ISI D G GI ++ + Sbjct: 488 IDLDAINQVLDNLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIF 547 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A + G GLGL IA+ ++ HG I S+ G V +P + Sbjct: 548 ERFYRVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEWNVGTTVTFWVPFAQ 602 >gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 957 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 129/276 (46%), Gaps = 9/276 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 I + V + + +E L + + R AE N AKS FLA+MSHE Sbjct: 239 IPVIRDGRLRGVVAMGTDISEIKRDEIRLRQLNTELAQARDHAEAANRAKSTFLANMSHE 298 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G ++++ P E + + + HLL +IN++LDLS+IE+G+ Sbjct: 299 IRTPMNAIIGLTQLLRRTHRDPAGAEQ----LAKVADAADHLLQIINDVLDLSKIESGKV 354 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL I L +++ + ++ RA EK +E+ D ++ D + Q +LNLL+NA Sbjct: 355 ELESIDIDLDELLSRTLSLVSSRAHEKGLELVLDTDHLPRTLRGDPTRLSQALLNLLTNA 414 Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT G V + S++D G G+ ++ + +F QG + Sbjct: 415 IKFT-DHGSVILRGQKLQDGADGVHVRFSVQDTGIGVEADQVEALFLAFEQGDSSTTRRH 473 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + + GG+ S +G Sbjct: 474 GGTGLGLAITRHLAQLMGGESGADSVAGQGSTFWFT 509 Score = 39.1 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 10/150 (6%) Query: 107 RIWLLVGQ---IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPY 161 + +A+ + W+ ++P W Y I+ +A L I ++ + +L + Sbjct: 5 KRRFAAPLTPLVALAIQWSFWPWLQPFAWFLFYPAIFFAARLGGRIGAWLATALSVVLVW 64 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 VF+ P V S + L L G L + Q + Sbjct: 65 TVFIGPSPGVGNPSAVFSTIVFALMGILFGEAQEQLMRALRKDRQALDGSQA--ELQRHR 122 Query: 222 DDLIAELEVAKSLSD---ETRKRAEEENLA 248 D L ++ + + + R AE A Sbjct: 123 DHLQELVDARTAELEKAMQARGDAEAFVRA 152 >gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 330 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 13/246 (5%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + KS+FLA+MSHE+RTPLN I+ +E+ + + +EY+ + S +HLL Sbjct: 1 QADKMKSQFLANMSHEIRTPLNGIINCTEL----CLDTRTSPEQQEYLDLVRFSAKHLLR 56 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 +I +ILD S+IEAG+ E+ + SL D + + +L RA +K +E+ ++D ++ + Sbjct: 57 IITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQII 116 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 D + QV +NL+ N++KFTA G + V S++D G GI + + Sbjct: 117 GDPGRLFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSL 176 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----LPNT 475 + +F Q + G GLGL I+ + A GG + S+ +G +P Sbjct: 177 LFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWVESE-GKGSTFSFTANFHIPPA 235 Query: 476 RVLNFI 481 L Sbjct: 236 CDLPSS 241 >gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10] gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] Length = 1035 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 99/265 (37%), Positives = 156/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA+GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1425 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 7/259 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + E R AE+ +SRFLA+MSHELRTP++ + G E++++ + N Sbjct: 804 ITALKHQEHDLREARAYAEQAMQVRSRFLATMSHELRTPISGMHGMLELLQMSEL----N 859 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + ++ S +LL L+N++LD S+IEAG+ +L L ++ + I A Sbjct: 860 DDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQLQLHYQDCRLASVICDVIRGHATLAH 919 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +++ + P + D + QV+ NLL+NAVKFT G + + V + R I Sbjct: 920 GKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLNNAVKFTER-GEIRIQVSFEKERLA-I 977 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIAE + + T F Q I G GLGL I + GG ++ SK Sbjct: 978 AVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGGTGLGLAICHQLAQKMGGTLVLESKPG 1037 Query: 464 EGVEVIAILPNTRVLNFIP 482 G + P P Sbjct: 1038 HGTRLTFDFPLAECQWDAP 1056 >gi|288962184|ref|YP_003452479.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914450|dbj|BAI75935.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 882 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 97/271 (35%), Positives = 149/271 (54%), Gaps = 1/271 (0%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + + + E L L+ A+ +++ R+ AE N AK FLA +SHELRTPLNA+ Sbjct: 320 RNTVERTSAERDESARLATALDHARDMAETARQAAEAANHAKGEFLAGLSHELRTPLNAV 379 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GF+++I E GP+ +Y++Y ++ SGQH+L LINEILD +R EAG + E Sbjct: 380 IGFADLIAREAEGPVGTPSYRQYAANVRDSGQHVLELINEILDHARAEAGALTIEEGRCD 439 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ML RA+ + + + P+ + D++ +RQ++LNL+ N VK+T GG Sbjct: 440 LEAAADFAVRMLTPRAERAGVLLTAAVMPAARMLRGDDRRIRQILLNLIGNGVKYTPSGG 499 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 V ++V I + D G GI G++ VL F + A A +G GLGLP+ + Sbjct: 500 SVTLSV-LLEEGVPVIRVTDTGLGIPAGDVDRVLEPFARVESAANRAVEGAGLGLPLTRR 558 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 ++ HGG +RS L G V LP R+L Sbjct: 559 LVELHGGVLTLRSTLGVGTTVTVRLPAGRLL 589 >gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 586 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 3/231 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + F+A++SHELRTP+ I G++E + + + ++G I L +L Sbjct: 355 ADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDL-ADDPGRRDRFLGIIQNHADRLSDL 413 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++L LS +E+G + + + D VR+ +++L RA+EK I + + S AD Sbjct: 414 VRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMEL-GSCAPVSAMAD 472 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + QV++NLL NA+K++ GGR+ V G +S++DNG GI E ++P + F Sbjct: 473 RGRLDQVLINLLENAIKYSGQGGRIQVEAA-EEGEMVRVSVRDNGIGIPEKDLPRLFERF 531 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + A G GLGL I + I+ HGG + S + +G LP Sbjct: 532 YRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLPRA 582 >gi|218282519|ref|ZP_03488769.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989] gi|218216506|gb|EEC90044.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989] Length = 950 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 155/292 (53%), Gaps = 7/292 (2%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 I++ A +F++++ HL V S L+ + A++ + K AE+ Sbjct: 506 AIAMYDSTAYKTTFYSFLKDHLVVVLVLGFSVIIVILLLLQKARRAEASAKVALKSAEDA 565 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +LAK++FL ++SH++RTP+NAILG+SE+++ E + + E++ + ++G LL++I Sbjct: 566 SLAKTQFLHNVSHDIRTPMNAILGYSELMKNE-LKDNDLPKVFEHLNKLQKAGNILLSII 624 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N +LD++RIE+G EL E+ ++ DI + I M + A++KNI + + V AD Sbjct: 625 NNVLDMARIESGHMELDENYANIEDIRQRLIEMFEDEAKKKNIHVRYTFNVEHKHVMADV 684 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTV 420 + ++ +N+LSNA+K+T G V V V S SI D G G+++ + + Sbjct: 685 TKVEEIFVNILSNALKYTPSNGSVEVNVDELSCDEPGYMIVRTSIMDTGIGMSQEYLEKI 744 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 SF + I S G GLG+ I + + GG ++S L +G I L Sbjct: 745 FESFSR-ERMISSKISGTGLGMAIVKKYVDLLGGTIDVKSVLGKGSTFIVTL 795 >gi|294634067|ref|ZP_06712622.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292829881|gb|EFF88235.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1168 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 97/410 (23%), Positives = 171/410 (41%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + +G+ R + V ++ G L + L I +L + + Sbjct: 725 RFSFGRSLVGQAARSRRTITVDELPAGYVTISSGLGQAVPSALVLLPILFEDQVLGVIEL 784 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITY 205 +++++F + FL + ++ I++ D L L + Sbjct: 785 ASVTSFTPIHRDFLEQLRETLGVNVNTIVANARTDELLDESQRLTAELQARSAELQAQQE 844 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ + ++E ++ R+ E + KS FLA+MSH Sbjct: 845 ELQRSNAELEDKASLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 904 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 905 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 963 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 +++ + L ++ + +K +E + + ++ D+ +RQ++ NLLS Sbjct: 964 MDVTPERVPLSRLIEYVEATFRPMTTQKGLEFAVETATGAPADLFTDDSRLRQILRNLLS 1023 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GRV +++ + +KD G GI + + ++ +F Q Sbjct: 1024 NAVKFTEQ-GRVELSIEPAADEEVPAGVVRGGAVVAFRVKDTGIGIPQQHLESIFGAFQQ 1082 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG ++ S G LP R Sbjct: 1083 ADGTTSRKYGGTGLGLSITREIAHLLGGAVVVDSAPGRGSTFTLFLPVAR 1132 >gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365] gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365] Length = 397 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 11/325 (3%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 F L+T + I+ A + A + F +T+H ++ Sbjct: 62 RVAMHPFAHEGQHLATVVVGPYAPDAIAGAEIAAHLVGMFGILTHHAHARHLTSTMHSEA 121 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + AEL ++ + +E + KS FLA++SHELRTPL +++G++E++ G Sbjct: 122 MEHNYAELTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEMLFEGLAG 181 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 PL N+ ++Y+ I LL LI +L+ S +E+G + + + I+ + L Sbjct: 182 PL-NKEQRDYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIERVLSSLG 240 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 +A+ + IE+ I L + D + MRQV+ L++NAVKFT R+ + V Sbjct: 241 PQARARTIEVR-PIPADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEVRVAPLSR 299 Query: 397 -----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G + + D G GI + ++ F Q + G GLGL +A+S + Sbjct: 300 YADEGDTPGVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTLAKSYIEA 359 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476 +GG + S EG +P Sbjct: 360 NGGHIWVESAPGEGASFTFTVPAEP 384 >gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] Length = 575 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 120/236 (50%), Gaps = 4/236 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +S F+A++SHEL+TPL +I GF E ++ + + + +++ I + L+ L Sbjct: 342 LERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNIIEVEVERLVRL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L LS IE + E + + ++V E I +L+++A++KNI++ K+ L + Sbjct: 400 INDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGL-EMNIY 458 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+ +NL+ NA+ + G+V VTV I +KD G GI E+ + F Sbjct: 459 RDWLKQIFINLIDNAIVYNKENGKVWVTVEKL-DNLIVIKVKDTGIGIPGREVERIFERF 517 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + G GLGL I + I+ +GG+ + S+ G E +P + + Sbjct: 518 YRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPIVKKADP 573 >gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 869 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++I I+++ LL LIN+ILDLSRIE+G E + +L +++ QL Sbjct: 681 EEIGQFIATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + + D + D ++QV+ NL++NA KFT G + I Sbjct: 741 PRVELLLRMPDNEKKYLVTDNVRLQQVVNNLINNAAKFT-TYGSITFGYEEDEDPEYTRI 799 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI+E I + F + QG GLGL I Q+I+ G + S++ Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLRGTIFVTSEVG 855 Query: 464 EGVEVIAILP 473 G +P Sbjct: 856 RGTRFTVRIP 865 >gi|150866454|ref|XP_001386063.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054] gi|149387710|gb|ABN68034.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054] Length = 1118 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 21/321 (6%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDL 224 V+ + ++A L + + F IT + + E D L Sbjct: 400 IQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEASGEMDAL 459 Query: 225 IAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 ++ E R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 460 KTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL---- 515 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V + Sbjct: 516 SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALK 575 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVT---- 392 L ++A EK++++ + D S + D +RQVILNL NA+KFT G Sbjct: 576 TLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKKSS 635 Query: 393 --VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + + + D G GI + ++ + +F Q + G GLGL I++ ++ Sbjct: 636 KFTDDSEKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIH 695 Query: 451 NHGGQFLIRSKLREGVEVIAI 471 GG+ + S+ G Sbjct: 696 LMGGEIWVTSEYGSGSNFYFT 716 >gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 869 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 623 IQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 680 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++I I+++ LL LIN+ILDLSRIE+G E + +L +++ QL Sbjct: 681 EEIGQFIATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMP 740 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + + D + D ++QV+ NL++NA KFT G + I Sbjct: 741 PRVELLLRMPDNEKKYLVTDNVRLQQVVNNLINNAAKFT-TYGSITFGYEEDEDPEYTRI 799 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI+E I + F + QG GLGL I Q+I+ G + S++ Sbjct: 800 FVEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLRGTIFVTSEVG 855 Query: 464 EGVEVIAILP 473 G +P Sbjct: 856 RGTRFTVRIP 865 >gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] Length = 877 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 23/292 (7%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL-----------AKSRFL 253 + L + L+ E + LI L+ RK AE + AKS FL Sbjct: 202 WMLLSGQIIALTVTGEIERLIGTLQDITR-----RKEAELISRDAANAARAANEAKSAFL 256 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHE+RTP+N ILG +++ + N +EY+ + S Q LL++I++ILD S+ Sbjct: 257 ANMSHEIRTPMNGILGMTQLCLDTEL----NGEQREYLSLVMSSAQSLLHIIDDILDFSK 312 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVI 372 IEAG+ L E ++L ++ + L A EK IE+ ++D + + D +RQV+ Sbjct: 313 IEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPEMMRVDVVRLRQVL 372 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NLLSNA+KFT G + + V + ++D+G GI + + +F Q + Sbjct: 373 TNLLSNALKFTPQ-GEILLAVAPAAQDGEWRFRVRDSGIGIPPEKQQVIFEAFSQADTST 431 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL I+ ++A GGQ + S+ +G E LP PE Sbjct: 432 TRRYGGTGLGLTISARLVAMMGGQLTVASEANQGSEFSFTLPLHSAEQATPE 483 >gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 467 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 163/342 (47%), Gaps = 20/342 (5%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L S+ ++++L A+ S + L AI ++ I + A + F IT Sbjct: 127 MLYVAICSSRADYILRMAIPYSGMKEYLMLLLPAIWLSFLMAIMYSAFSADS--FSKSIT 184 Query: 205 YHLFKSNVKILSCQAEKDDLIAEL----------EVAKSLSDETRKRAEEENLAKS---R 251 L + + ++L + DL E E +S ++ + L K Sbjct: 185 RPLKEISQEMLKVNGDYTDLSFETYQYPEINIIAETTTEMSKNVKEYLNQIELEKQIRQE 244 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F ++ SHEL+TP+ ++ G++E++E + + E ++I I + ++ +LIN+IL + Sbjct: 245 FFSNASHELKTPITSVQGYAELLESGII--QDEEQKMDFIRRIKKEAVNMNHLINDILMI 302 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 SR+EA E+ ++ + L ++ + + L+ A + I P ++A+ + M+++ Sbjct: 303 SRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHVDCKP--LCIYANGQQMKEL 360 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NL+SNA+K+ GG+V VTV R I +KDNG GI + + + F + Sbjct: 361 FGNLISNAIKYNKPGGQVWVTVT-EENRNVIIRVKDNGMGIPKESLGRIFERFYRVDKGR 419 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL I + I+ + G +RS+L G E + +P Sbjct: 420 SKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIP 461 >gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1047 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 17/255 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +D ++AE N AK FL ++SHE+RTP+N IL E+IE + N+T + Sbjct: 154 KKKLIEADLALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENTVL----NDTQR 209 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ I SG +LL+LI +ILD S+IEAG+ EL + ++I ++ E + ++ AQE+++ Sbjct: 210 DFLSCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDL 269 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------- 399 EI ++ S+ V D ++QV+LN LSNA+KFT G V V V Sbjct: 270 EILLTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPK-GHVIVRVKLDKSNPNQDSSSL 328 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++D+G GI E ++ ++ T+F Q + QG GLGL I++ + GG+ Sbjct: 329 VDYTVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEI 388 Query: 457 LIRSKLREGVEVIAI 471 +RSK G Sbjct: 389 TVRSKFGNGSTFAFT 403 >gi|311696550|gb|ADP99423.1| integral membrane sensor hybrid histidine kinase [marine bacterium HP15] Length = 1127 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 103/437 (23%), Positives = 194/437 (44%), Gaps = 25/437 (5%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 I L++A + W T + + +A + + + + Sbjct: 462 IAMGVALIMAPLIAWKTGGRFYTARPFVPIATDHQLVQCTICEHHFEPEDLTHCPAYDG- 520 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL--IALSISALSNFMLPYAVFL--- 165 + + L +PG E L + + + + + + L V + Sbjct: 521 TICSLCCSLDARCADACKPGAGYQEQLNQFLGSLMPKPVLAGLRSRLGHFLSLLVLINGL 580 Query: 166 --------SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 F V + + ++S+ + + ++ T + + ++ H + V Sbjct: 581 SGLLLSLIYFKTPVASPAEGLLLSVTLWKVFFILVIVTGVICWLFVLAHESRV-VAEEES 639 Query: 218 QAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + L+ E E + +++AE N AKSR+L +SHELR+PLNAILG+++++ Sbjct: 640 RRQNRLLMEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLM 699 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E + P + KE +G I RSG++L +LI +LD+S+IEAGR +L + + ++ + Sbjct: 700 ENDETIPSH---RKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQ 756 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + M +L+A++K + L V DEK +RQ+++NLLSNA+K+T GG V +T+ Sbjct: 757 LVTMFRLQAEDKGLAFDYHCPNPLPEMVTTDEKRLRQILINLLSNAIKYTDRGG-VSLTL 815 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + +++D G GIA + + F + +S G GLGL I + + G Sbjct: 816 RYR-SQVAEFTVRDTGEGIAPENVERIFRPFERIRTPGQSRA-GTGLGLTITRLLTEIMG 873 Query: 454 GQFLIRSKLREGVEVIA 470 G + S +G Sbjct: 874 GDISLESVPGQGSVFRV 890 >gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] Length = 1586 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 14/258 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + AE+ AKS FLA+ SHE+RTPLNAILG + ++ E++ E+ + Sbjct: 825 EQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 880 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL ++N++LDLS+IEA L + L + + E + +A+ KN++ Sbjct: 881 DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFK 940 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402 +I L V AD +RQ++ NLLSNA+KFT++ G + + Sbjct: 941 LEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALRAEIIDKFIWKGAEKNIVR 999 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 SI D G GI+E + F Q + G GLGL I ++ G+ + S+ Sbjct: 1000 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESRE 1059 Query: 463 REGVEVIAILPNTRVLNF 480 +G +P + + Sbjct: 1060 GQGSTFWTDMPLQTLSDE 1077 >gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] Length = 620 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 11/241 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 377 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 434 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--------EKNIEIFQKIDPSLS 359 +L LSR++ G ++ ++ D + + + + +K I +KI Sbjct: 435 LLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDL 494 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI + ++ Sbjct: 495 WVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQ-IILSISDQGLGIPKKDLNK 553 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A + G GLGL IA+ I+ H G+ S+ +G LP + Sbjct: 554 IFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFEPMSE 613 Query: 480 F 480 Sbjct: 614 E 614 >gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1821 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 103/384 (26%), Positives = 164/384 (42%), Gaps = 35/384 (9%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L E L + +L + +++ F FL+ ++A S I Sbjct: 1220 GLGEASPAYVIVLPVLFEGKVLGVIELASFQPFTQIQRDFLNQIAEMIATSVNTISVNTK 1279 Query: 185 LDISLAGMLATALSFFTYITYHLFK--SNVKILSCQAEKDDLIAEL----EVAKSLSDET 238 ++ L + + + EK +L+A+ EV + +E Sbjct: 1280 TEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEA 1339 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R+ EE KS FLA+MSHELRTPLN++L ++++ G L+ E+ Sbjct: 1340 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAAGNLS-PKQVEFA 1398 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V + EK ++ Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV------------------- 391 ++ P L ++ DE+ + QV+ NLLSNAVKFT G V Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPQSIREQLLEA 1518 Query: 392 -TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 ++ G S+ D G GIA G++ + +F Q G GLGL I++ I Sbjct: 1519 GSLRDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578 Query: 451 NHGGQFLIRSKLREGVEVIAILPN 474 GG+ S+ G LP Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLPL 1602 >gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 545 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 22/348 (6%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 L+I L + +A+ AI + V + ++ T Sbjct: 196 LIILQQAGLFKKMGLFQETVQKSTKISLAIMLFAITFVAVFSFFFIRSIYRPINALKAAT 255 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H+ + +++ D++ + +S K+ E+ + KS F++++SH L+TPL Sbjct: 256 DHIAQGDLEHRINITSNDEIGSLGRSFNEMS----KKLEQLDTMKSDFISNISHNLKTPL 311 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 AI +E++ + G ++ E K + I + L+ +IN++LD+SRIEAG + Sbjct: 312 TAIKEANELMLDKIAGQISFEQMK-LLNIIKGNTLRLILMINDLLDISRIEAGLMRYNFQ 370 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + D++ E I ++ ++K I I + D + V D + Q++ NLLSN++KFT Sbjct: 371 PAQIRDVISESIEDVRFLTEKKGIFIQYEDDSLVPHVLLDRGKIAQIMDNLLSNSIKFTP 430 Query: 385 IGGRVHVTVGWTSGRGQ-----------------YISIKDNGPGIAEGEIPTVLTSFGQG 427 GG + + ISI D G GI + ++ F Q Sbjct: 431 TGGVITIKAFVVDASMLSPIFAQQGKLNNIQSFLQISISDTGIGIPKEHQNSIFDKFQQV 490 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +S +G GLGL IA+ I+ +HGG + S G LP Sbjct: 491 VNKRESGIKGTGLGLFIAKHIVEDHGGNIWLESNCGSGSTFHFTLPLR 538 >gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] Length = 1126 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 155/362 (42%), Gaps = 10/362 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 G W L + + ++IA+ +++ L ++ + + Sbjct: 323 VDGHLWGLSLELPEKEAFARIQQLEQIFVIAMIIAIVCVVIASHFLSNSITAPL--LRLT 380 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + + ++ + + +S + + +++ ELE + Sbjct: 381 WAAERVSAGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKDQN---EELEANLA 437 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E + K FLA+ SHELRTPL+ ++G +E + GP++ +++ + Sbjct: 438 TIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEI 496 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SGQ L +L+N++LD ++ G ++++ L + + Q K+I I + Sbjct: 497 IINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQ 556 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 +D SL V+ DE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI Sbjct: 557 VDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIP 614 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E+ + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 615 ADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674 Query: 474 NT 475 Sbjct: 675 LA 676 >gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 592 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ F+A++SHELRTPL +ILG+ + + + + +T ++++ I L LI ++ Sbjct: 370 RNDFVANVSHELRTPLTSILGYLDTLLESDI--EDQKTKEKFLKIIKEETNRLSLLITDL 427 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L+LS+IE+ +EL + ++ +L+ AQ K+I I +I+ L V+ + + Sbjct: 428 LNLSKIESQSFELY--PGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQV 485 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NL+ NA+K+++ GG ++++V Y I+DNG GI E + F + Sbjct: 486 EQVLINLIDNAIKYSSSGGTINISV-QKKSDKLYFEIQDNGIGIPVDEQERIFERFYRVD 544 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G G+GL I ++I+ HG + + S++ EG + L Sbjct: 545 KARSRELGGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588 >gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 778 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 11/234 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + +E + Y I SG+ LL +IN++ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SEEQRLYANTIKNSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEA + L L V E +++LQ A+EK + + D L + D Sbjct: 272 LDYSKIEAQKLILHPEPFDLERSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGG---RVH-VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 +RQV+ NL+ NAVKFT G ++ ++ +++I+D G GI ++ + Sbjct: 332 IRQVLTNLVGNAVKFTTEGHVNLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGE 391 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNT 475 F Q +G GLGL I + ++ GG+ + S++ +G LP Sbjct: 392 FNQVDDEQNRKFEGTGLGLAITKRLIELMGGEIWVESEVGKGSCFGFRIKLPLA 445 >gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] Length = 970 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174 + L LT+ A L++A+ I ++ A L + + Sbjct: 325 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 384 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233 Q + + + A + A + I K L E ++L+ E Sbjct: 385 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 444 Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L++E R AE+ N AKS FLA+MSHE+RTP+N +LG + ++ + PL Sbjct: 445 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 504 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 K Y I+RSG++LL ++N++LD S+IEAG E+ ESA L +V + ++Q R Sbjct: 505 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 560 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A EK++ I+ ++ W D + QV+ NL+ NA+KFT G ++V++ Sbjct: 561 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 620 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA+ E T+ +F Q S K A G GLGL I++ I+ GGQ + S Sbjct: 621 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 679 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + EG +P T P Sbjct: 680 EEGEGSRFWFTVPLTPCDAVEP 701 >gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 618 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 6/272 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + N + A+ EL++ E + AE N +KS FLA+MSHE+RTP+ Sbjct: 175 RMDQLNQLVEQRTADLIKAATELKLTNEQLVEASRAAEAANRSKSEFLANMSHEIRTPMT 234 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G++E + + + I R+G HLL +IN++LDLS+IEAG+ ++ Sbjct: 235 AIIGYAEELRETGEIERAPKERVFALDTILRNGHHLLQVINDVLDLSKIEAGKLDVYMQP 294 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 S + IV + + ++ LRA +K + + + L + D +RQ+++NL+ NA+KFT Sbjct: 295 ASPVRIVSDVLALMHLRASQKGLRLENEFCGPLPETIVTDVTRLRQILINLIGNAIKFTD 354 Query: 385 IGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + + + D+G G+ E E+ V F Q + ++ G GL Sbjct: 355 K-GTVSLRTKLIDIGSDNPRLEFEVVDSGIGMTEDELRRVFVPFEQANNSMSRRYGGTGL 413 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I+ + GG S L G + Sbjct: 414 GLSISIRLTELLGGSMRCESSLGHGSYFHFTI 445 >gi|15604100|ref|NP_220615.1| histidine kinase sensor protein (barA) [Rickettsia prowazekii str. Madrid E] gi|3860792|emb|CAA14692.1| HISTIDINE KINASE SENSOR PROTEIN (barA) [Rickettsia prowazekii] gi|292571826|gb|ADE29741.1| Histidine kinase sensor protein [Rickettsia prowazekii Rp22] Length = 497 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E ++ E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLETNRNLKAQIEKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DIH +G+HLL++IN+ILDLS+ A + ++ + L ++ +I+++ Sbjct: 299 --DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + +E+ ++ + AD K ++QV+LNLLSNAVKFT GG V +++ + Sbjct: 357 PRAYQAEVELISRLPKEHVVINADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ +G V Sbjct: 477 SKINKGTTVTITF 489 >gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 614 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ K+A + AKS FLA+MSHE RTPLN I+G +++ + +N KE + + Sbjct: 228 LRKSSKQANAASEAKSEFLANMSHEFRTPLNGIMGMTQL----AISKSSNTQQKELLEVV 283 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +S LL ++N+ILDLS+IE+ R + +SL +V QL A++K IE + Sbjct: 284 IQSADALLMIVNDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTTV 343 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGP 410 P + +D +RQ++ NL NA+KFT G V V++ G+ I D G Sbjct: 344 SPRCPELIVSDAVRLRQILFNLTGNAIKFT-KSGSVTVSIEPIQLPDGKYLLFEIADTGI 402 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + T+ +F Q + G GLGL I + + GG+ + S + +G Sbjct: 403 GIPDKLLNTIFEAFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFSV 462 Query: 471 ILPN 474 +P Sbjct: 463 FIPL 466 >gi|330502153|ref|YP_004379022.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328916439|gb|AEB57270.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 829 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 19/382 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIA----LSISALSNFMLPYAVFLSFFPVVVAL 174 + W + + L + + + L+ + L A + F+ V A Sbjct: 341 IAWATIPATDWH------LLTVVDESEVFSQTNELASHYRNIGYLLIAGLVLFYLVFFAF 394 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS- 233 + G + + L + + I + DD+ + + + Sbjct: 395 MWGRARELTERLRKPIGGIVSMLREIGQGNWKPKRPATTIDELETIIDDVESMGQRLERN 454 Query: 234 --LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + A+E + AKS+F++SMSHELRTPLNAI GF++++ ++ N+ +Y+ Sbjct: 455 ATQLQRASQEAQEASRAKSQFISSMSHELRTPLNAIQGFAQLMRMQQ--APQNKQDTDYL 512 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +I + +HL L+ +ILD S +++ + L + + + ++ EC ++ A+ + + + Sbjct: 513 EEILLASRHLNQLVGDILDWSSLQSDQPRLEMARVDAVTLMSECADLVAPEAEARGLTLH 572 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 V AD + +RQV+LNLLSNA+K+T G V ++ + + I D G G Sbjct: 573 LSFPERSLQVLADPRRLRQVLLNLLSNAIKYTPK-GSVTLSC-MQMDKHVRLMISDTGMG 630 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA P + F + A QG G+GL + + A G+ + S+ +G + Sbjct: 631 IAPELQPLLFEPFQRLGQ-ENGAIQGTGIGLSLCKEYAALMNGEMGLYSEPNKGSQFWID 689 Query: 472 LPNTRVLNFIPEDNHESTQYKC 493 LP V + +PE + C Sbjct: 690 LPRY-VESSLPESAPHEARQAC 710 >gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2] gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2] gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2] Length = 499 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 133/257 (51%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL ++ + Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G ++ T+ + Sbjct: 367 ISGIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIYFGYTLDNRNANSVQ 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + + F + + +QG GLGL I ++I+ + G + SK+ Sbjct: 426 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDIFVESKI 481 Query: 463 REGVEVIAILPNTRVLN 479 EG LP R + Sbjct: 482 GEGSCFTVTLPFERKVE 498 >gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1355 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 38/317 (11%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + ++L A+ E + + R A AKS FLA+MSHE+RT Sbjct: 624 LNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSQARDEALAATRAKSEFLATMSHEIRT 683 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+NA++G + ++ + + ++++ I S LL+LIN+ILD S+IE+G+ +L Sbjct: 684 PMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLE 739 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 SL + E + +L +A K++E+ ID V D +RQ+++NLLSNAVK Sbjct: 740 AFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVK 799 Query: 382 FTAIGGRVHVTVG---------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 FTA G V V+V +++ +++ D G GI + + SF Q Sbjct: 800 FTAR-GEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQ 858 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-----------------KLREGVEVI 469 + G GLGL I+Q + GG+ + S +G Sbjct: 859 VDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFY 918 Query: 470 AILPNTRVLNFIPEDNH 486 + N +P+ NH Sbjct: 919 FSIVVQSSQNLLPQWNH 935 >gi|74318689|ref|YP_316429.1| periplasmic sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74058184|gb|AAZ98624.1| Periplasmic Sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 841 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 101/412 (24%), Positives = 163/412 (39%), Gaps = 19/412 (4%) Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 + L + + D E+ AI + T L+L P + Sbjct: 35 IVIGLGFLLYFSRDLATLDESTREIAQLISAFFT---AIAVVITALSLTSLKVSPPRRIV 91 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + ++ P V V + ++ V + +A +A Sbjct: 92 AMALDYATCSFLLTYTGEAGSPLLV------VYLWVTLGNGFRYGVFYLYIAAAMAITGF 145 Query: 199 FFTYITYHLFKSNVKI-LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + S++ I L+ + +R + +LAKS FLA+MS Sbjct: 146 LLVLTYSSYWNSHMSIGLAFLLSMIAVPLYSASLLKQLHSAVERERKASLAKSSFLANMS 205 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN ++G ++++ + N+ KE+ I S LL LI+ +LD+SRIEAG Sbjct: 206 HELRTPLNGVIGVADLLAETKL----NKEQKEFAQIIRTSADTLLELIDNVLDISRIEAG 261 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLL 376 R S L ++ + M++ +A K + + I P + D +RQV++NL+ Sbjct: 262 RILTSSEDFDLHRVINGTVAMMETQANAKGLVLAAHIAPQTPFQLQGDAPHLRQVLINLI 321 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NAVKFT GRV V V + + D G GI + SF Q +I Sbjct: 322 GNAVKFT-EHGRVDVYVRPVGQGNPQRLRLEVVDTGIGIPPDAQIRIFDSFTQADASITR 380 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLG IA+ ++ GG+ + S+ EG LP + P + Sbjct: 381 RFGGTGLGTTIAKQLVEAMGGEIGLHSREGEGTTFWFELPFALRSSGQPAEE 432 >gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] Length = 1430 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 10/260 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + R+ A AKSRFLA+MSHE+RTPL I+ E+ E +G Sbjct: 777 ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGY--- 833 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + +S +LL+++N+ILD S+IEAG+ L SL + + +A Sbjct: 834 -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 892 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 K ++ +DP L V D+ + QV+ NLLSNA+KFT G V + + Sbjct: 893 AKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT-EYGTVGLAAKLLDLDGEQQ 951 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G GI+E I + F Q G GLGL I++ ++ GG + Sbjct: 952 QICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGSLNVT 1011 Query: 460 SKLREGVEVIAILPNTRVLN 479 SK+ G LP + Sbjct: 1012 SKINIGSTFSITLPLKTLAE 1031 >gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262] gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262] Length = 591 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + +++ + + A EKNI++ + D Sbjct: 424 LALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1086 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 11/261 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + E + AE + KS FLA+MSHE+RTPLN I+G +++ + Sbjct: 693 ITERVLTSRALVEAKDLAESASRVKSEFLANMSHEIRTPLNGIMGMLQLLRAGDL----T 748 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY ++ + L L+ +ILDLSRIEAG+ ++ E ++L D + M + A+ Sbjct: 749 EEQAEYAAYGIKASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAAR 808 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSG 398 K + + + L ++ D+ ++QV++NL+ NA+K+T GG V V V Sbjct: 809 SKGLSLVFDLPDDLPDRLFGDDTRIQQVLVNLIGNAIKYTETGG-VTVEVTTLPRLRPDT 867 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GI + ++ TV F Q S QG GLGL I + ++ GG + Sbjct: 868 VHVLFTVTDTGIGIPDDKLGTVFEHFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAV 927 Query: 459 RSKLREGVEVIAILPNTRVLN 479 S+ G +P + Sbjct: 928 DSEPGRGTVFGLCVPLRPADD 948 >gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1017 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 99/461 (21%), Positives = 198/461 (42%), Gaps = 24/461 (5%) Query: 34 DREIITLHVESLFRVSPILPLFVLL-VANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90 +++ L R S ++ +++ V +I + + + + L + + + +G Sbjct: 167 AKQLQQEKSVELVRDSLVIGSLLVIGVYHIILYLLRRNDVTPLYFGLFCMCIAVRTMLVG 226 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144 + + I +VW + I +G + + + S T Sbjct: 227 SRFILE-IFPAFSWVWFAKVSYLTIYVGELFLISYIYHLFPQFLSRKVWRLTQFFTISLT 285 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 LL+ + + ++ L S V+ A+ ++ + ++ +L +L F T + Sbjct: 286 LLVLTTDIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 345 Query: 205 YHLFK----SNVKILSCQA------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L + + +L + L + A + +R + K FLA Sbjct: 346 DTLNRKGVFTTPALLQFGVLGFVFLQALLLSMKSSRAFFQVERLSERLLTLDKLKDEFLA 405 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SHELRTPL+ I+G ++ + + G L + + + + SGQ L +L+N+ILD S++ Sbjct: 406 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVI-DLLRLMKVSGQRLAHLVNDILDFSKL 464 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 + L ++L V + +L A++K + + ++ + V ADE ++Q++ N Sbjct: 465 KHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDM-YVMADENRLQQILHN 523 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+ +T G V VT G+ + I D+G GI+E ++ + SF Q + +S Sbjct: 524 LIGNAIAYTET-GTVTVTAKRLQGQ-VSVQITDSGIGISEADLDRIFESFEQINPLDRSQ 581 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G G+GL I + ++ HGG+ + S + EG LP Sbjct: 582 QGGTGIGLSITKKLVELHGGRIGVTSGVGEGSTFSFTLPMA 622 >gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 594 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 9/248 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E R + + F+A++SHELRTP++ + G+SE I + G ++ KE Sbjct: 354 RDMTEERRH-----DKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAG--TDQEKKELA 406 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ + L+NE+LDL+R+EAG +LS I + Q A+E+ + + Sbjct: 407 KIIYDESLRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKEQQLTLD 466 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + D + QV+ NLLSNA++ T GG V + I + D G Sbjct: 467 FIYRGDEGKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENG-VKIDVTDTGT 525 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P V F + A G GLGL I ++I+ H G+ + SK +EG A Sbjct: 526 GIPEEDLPYVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQEGTTFTA 585 Query: 471 ILPNTRVL 478 PN R + Sbjct: 586 FFPNARTI 593 >gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437] Length = 461 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 132/319 (41%), Gaps = 10/319 (3%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + S +++A + ++ + L+ L L L K + I + Sbjct: 135 LRMGIRDSTTVLLIAGAIIFLLISLPVAYWLSKRLTAPLRLMIPAIDRLGKGELGIQAPV 194 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +D+ + +S K+ ++ A+ +A ++HELRTPL + G E I+ Sbjct: 195 VSRDEYGKTAKAFNQMS----KQLQQAEEARKNLVADVAHELRTPLTVLQGKLEWIQQRG 250 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 E + + L L++++ LS EA + L + L ++R I Sbjct: 251 -----QPVRPENLLPLQDELIRLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDR 305 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +Q A K +EI D + + D + QV LNLL+NA+++T GG V V + Sbjct: 306 IQPDADRKGVEIRLHCDAGIPPISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKE 365 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Q I + D G GI +P + F + + G+GLGL IA+ + H G + Sbjct: 366 GLQ-IQVSDTGVGIPPEHLPHLFNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEV 424 Query: 459 RSKLREGVEVIAILPNTRV 477 S +G I LP V Sbjct: 425 ESAPDQGTTFIVELPFQGV 443 >gi|330899200|gb|EGH30619.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 619 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L +++ A+ LS + + +AI Sbjct: 126 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 185 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + +TR+ A Sbjct: 186 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 234 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 235 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 290 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360 +IN+ILD SRIE ++ +L ++V A ++ + + I P L + Sbjct: 291 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRTLLLELHIQPGLETLN 350 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416 V D +RQ+++NL+ NA+KFT G+V V W + + ++D+G GI Sbjct: 351 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDELLHFTCAVQDSGIGIDAER 409 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ +F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 410 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 467 >gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 1479 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 7/338 (2%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 S L V + AL + S +L L + + ++ Sbjct: 991 GSGLGAATPASIVIVPVMFQGEALGVIELASFGEFGHGHLDLL-DQLKENIGVNVNTMQA 1049 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 N + S E L EL ++ ++ + KS F+A+MSHELRTPLN++L Sbjct: 1050 NARTDSLLVESQRLTEELRAGSVELEDRARQLSSASKYKSEFMANMSHELRTPLNSLLIL 1109 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ G L N E+ IH SG LL LI++ILDL+++E+G ++ + + D Sbjct: 1110 AKLLTDNLDGNL-NPKQVEFARTIHSSGTDLLQLIDDILDLTKVESGHMQVQTDPVRVSD 1168 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +V + A EK + + P + ++ DE ++Q++ NLLSNAVKFT G + Sbjct: 1169 VVGYVESLTLPLAAEKGLGFDVSVQPDVPSTLHTDEHRLQQILRNLLSNAVKFTHE-GEI 1227 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + T+G ++D G GI ++ + +F Q G GLGL I++ + Sbjct: 1228 RLRI-RTAGPSVAFDVQDTGIGIPAEKLSVIFEAFQQADGTTSRKYGGTGLGLSISRELS 1286 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDN 485 A G+ +RS+ G LP +++ PE Sbjct: 1287 ALLEGRLDVRSEPGFGSTFTLYLPLGDQSLVDVRPEPE 1324 >gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] Length = 1001 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 21/422 (4%) Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT 122 + + L A ++ I L+ Sbjct: 345 SVVEALAVPLGVTAGAALFAIAVLWLAIVLFDRRALRPAYRRA--IRLIESDALNRALI- 401 Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 P L + A +S ++ + A + A S Sbjct: 402 --------RTAPAGLALLSLADGDEIVSNETMARYERLAAGAPLGKRLWRAYREHRDASG 453 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + ++ +A + ++ ++ ++ + + I + + E R A Sbjct: 454 YAKVVTCELPIAPDRADTPHVVANIMRTRYRGVDALLCTLTDITARKQMEQKLHEARVAA 513 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N AKS FLA+MSHE+RTPLNAI+G E++ + P T + + I S LL Sbjct: 514 ESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAP----TERRRLDTIASSSDALL 569 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +I+++LDLS+ E+ + + + D++ + + A K +E+ ++ P L+ Sbjct: 570 RIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELTCRVAPELADGY 629 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISIKDNGPGIAEGEI 417 D +RQ++ NL+ NA+KFT G V + G I + D G GI + Sbjct: 630 VGDPVRLRQIVSNLVDNAIKFTER-GSVSIDAQRVVRGAGGARVEIRVADTGIGIPADSL 688 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 PT+ + Q +I G GLGLP+ + I G L+ S+ EG + LP Sbjct: 689 PTLFDVYIQADASIYRRFGGTGLGLPLCRRIATLMHGDLLVDSREGEGTTMCVTLPLPEA 748 Query: 478 LN 479 Sbjct: 749 PP 750 >gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] Length = 619 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 377 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVAQQETSRMIRMIND 434 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + +K I +++ Sbjct: 435 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 494 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 495 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 553 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 554 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYETMTEE 613 >gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] Length = 617 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 11/241 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 374 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 431 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ--------EKNIEIFQKIDPSLS 359 +L LSR++ G ++ ++ D + + + + +K I +KI Sbjct: 432 LLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDL 491 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI + ++ Sbjct: 492 WVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQ-IILSISDQGLGIPKKDLNK 550 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A + G GLGL IA+ I+ H G+ S+ +G LP + Sbjct: 551 IFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFEPMSE 610 Query: 480 F 480 Sbjct: 611 E 611 >gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 391 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I +L+ + +++AE +L+KS FLA+MSHE+RTPLNAI GF+EV+ Sbjct: 141 HDITQLKETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITGFAEVLAS----AN 196 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +Y I + LL L+N+ILD+S+IEAG E + + + ++ + + Q+R Sbjct: 197 TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMR 256 Query: 343 AQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 + I +PSL S+ D + QV+ N +NA+KFT G +++G+ + Sbjct: 257 VNDAGKNIRIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEARDT 313 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 Y + D G GI ++P V F + ++G GLGL I+++I+ GQ Sbjct: 314 ELYFYVTDTGAGIPADKLPEVFGRFVKL----NKDKKGTGLGLSISKTIVNKLEGQIGAD 369 Query: 460 SKLREGVEVIAILP 473 S +G +P Sbjct: 370 SVEGKGSTFWFTIP 383 >gi|225026831|ref|ZP_03716023.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353] gi|224955838|gb|EEG37047.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353] Length = 437 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 142/304 (46%), Gaps = 12/304 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA-EKDDLIAELEVAKS 233 ++ + +A + + + + + K+ VK + A + +D + Sbjct: 140 ASNIWTVGGKIFPIIAATILVMMILCIILAHFMTKNLVKPIEQMAVDINDFSITPAYKEL 199 Query: 234 LSDETRKRAEEENLAKS-----RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 RA+ ++ KS F A++SHEL+TPL AI G++E++E G + E Sbjct: 200 APFAATIRAQHADILKSARMRQDFTANVSHELKTPLTAISGYAELMEN---GMVPPEEIG 256 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I ++ + LL+LIN+I+ LS +++ +L L + + C+ +Q+ A++ ++ Sbjct: 257 SFAQKIEKNARRLLSLINDIIRLSELDSSNTQLLVEKFDLFEEAQICVENMQIYAEKNDV 316 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 I + + A+ + + ++I NL +NA+++ G V V V +S YIS+ D Sbjct: 317 TITY--EGGHQEITANREMINELINNLCANAIRYNKKNGSVKVRVD-SSQGHPYISVADT 373 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI++ V F + + G GLGL I + I+A H Q + S++ +G + Sbjct: 374 GIGISKEHQKRVFERFYRVDKSRSKQTGGTGLGLAIVKHIVALHDAQLNLESEVGKGTTI 433 Query: 469 IAIL 472 Sbjct: 434 TVTF 437 >gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 497 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 81/342 (23%), Positives = 151/342 (44%), Gaps = 7/342 (2%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + I + A +V+ A + +LA ++ L T Sbjct: 159 VIGGIIVNAPLASLRANAAQISSLVLYSLLFATLVAGFFAFNLAKTISRPLQAMTSAAMD 218 Query: 207 LFKSNVKI---LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + N + ++ + E L A A +++T + + +AS+SHE R P Sbjct: 219 MKSGNFRNRIDINDKGELGQLAATFNQAVEETNKTIHEQKRLQALRQNLVASVSHEFRAP 278 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L +I GF + + G + E ++Y+ I + HL L+N+++DL+ IE+G +L Sbjct: 279 LTSIQGFVDAMLE---GFIREEEQEKYLRVILNNTLHLNRLVNDLVDLASIESGYVQLRY 335 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + + + + +AQEK+I++ + L ++ D + Q+++NLL NA+ +T Sbjct: 336 EDVDPYTLAEKALDSVYPQAQEKSIKLEYNYEEGLPAIRGDGDRLYQILINLLENAITYT 395 Query: 384 AIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 GR+ + + + ++KDNG GI EIP + F + A A +G GLGL Sbjct: 396 PDEGRIALEAQLSDDKEKVIFTVKDNGQGIPLAEIPYIWERFYKVDKARNRANKGKGLGL 455 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I + ++ H G+ ++S EG I+P + D Sbjct: 456 AIVRELVHMHNGEVAVKSTPGEGSAFSVIIPIEEKEDEKSPD 497 >gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 757 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 5/238 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQ 299 A+ +L+KS FL+++SHEL TPL ++G + + L+ E K+YI I +G+ Sbjct: 374 AQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKYIESIQANGK 433 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PS 357 L++LIN+ILD S + +G Y+L SL + + Q AQ+K+IE+ Sbjct: 434 KLMDLINDILDYSSLTSGNYQLRIREFSLYSVASAVMGDFQEEAQKKSIELVLDFQVKKE 493 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 +AD ++Q+I +L++NA+KFT GGRV + + + + I+D G GI + ++ Sbjct: 494 EIKFYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKNQ-VFFQIEDTGIGITQDQL 552 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 P + F Q + + G GLGL + + ++ H G + S EG LPN+ Sbjct: 553 PLLFEKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFTVRLPNS 610 >gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 1047 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 153/265 (57%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 781 LRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 840 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 841 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQP 900 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 901 QANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 960 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS--------AEQGVGLGLPIAQSIMANHG 453 + ++D G G+ + E+ L F Q + + +G GLGLP+ ++++ + Sbjct: 961 VMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1020 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S G V P TRVL Sbjct: 1021 AQFAIDSTPGHGTVVEIAFPPTRVL 1045 >gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 752 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 106/414 (25%), Positives = 158/414 (38%), Gaps = 16/414 (3%) Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + + + LA+ + L +K M E R W L C Sbjct: 55 AFAIGISFLFALACVALAILSMRLRGMRKKMRKIALHNEALADRNWELKEAEERSRC--- 111 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS--FFPVVVALSTQAIMS 181 + + + ++ +++ + A L F V+ I + Sbjct: 112 -----LFESQGDLIVLRDGNGIITSVNDAYCILAQRSRADLLGIRFALPVLEQGESVIEA 166 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 A + + + Q D+ E AK E R Sbjct: 167 NGTRVYDQRVETALGPRWIAWREALMRIDANHPAELQCVGRDVTDRTE-AKRALGEARDH 225 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A N AKSRFLA SHE RTPLN I+G S ++ + P Y+ + SG L Sbjct: 226 ANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETALTP----EQTTYVKAVKASGDAL 281 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L+LI E+LD SRIEAG+ +L L D++ + +L RAQ + + I ID +L Sbjct: 282 LSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQARQLAIASYIDETLPTE 341 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D +RQV+LNL NA+KFT+ GG + ++D G GIA + Sbjct: 342 VIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRFMVRDTGIGIAPDAQARI 401 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q I G GLGL I+ I+ GG ++S+ G +P Sbjct: 402 FRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPGSGSTFEVSVPL 455 >gi|332705480|ref|ZP_08425558.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332355840|gb|EGJ35302.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 606 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 16/286 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +K++ AE+ + +RAEE + KS FLA+ SHELRTPL Sbjct: 312 RQWSAAEIKLVGELAEQVGTAIAHGTLYKELEIASERAEEASRHKSDFLANTSHELRTPL 371 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++GF +++ + + +++I + + S HLLN+IN+ILD+++IEAG+ EL + Sbjct: 372 NGMIGFLKLVLDGM--ADDPQEQRDFIQEAYNSALHLLNIINDILDIAKIEAGKMELELA 429 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKF 382 + L + R+ +AQ KN+ + ++ ++ + + + QV+LNL+ NA+KF Sbjct: 430 PVELDSLFRKVEDFTINQAQLKNLSLRIEMPDVYDGIVMYGNYQRLLQVMLNLVGNAIKF 489 Query: 383 TAIGGRVHVTVGWTSG----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 T GG V V+ + + D G G++ + + +F Q + Sbjct: 490 TDEGG-VTVSAEVIRKKITFKGTEFPGLVKVRVADTGIGVSLDQQDRLFQTFTQVDGSRT 548 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRV 477 G GLGL I+Q ++ GG S G V +P +V Sbjct: 549 RQYGGTGLGLVISQKLIETMGGVVNFFSMGENLGSTVTFTVPLYQV 594 >gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] Length = 591 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E +R E + F+A++SHELRTP+ + G+SE I + + E E++ Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ L L+NE+LDL+R+E+G EL + + V + Q A++K +++ Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D M QV+ NL+ NA++ T GG V + V T G ++D+G G Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 I E +IP + F + A ++ G GLGL IA++I+ H G+ + S + EG Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSV 584 Query: 471 ILPNT 475 LPN Sbjct: 585 YLPNR 589 >gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 1209 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 8/260 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ E K+ F+A +SHELRTPL +I G ++ +G L I ++ Sbjct: 709 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKN 764 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ +IE+G+ + L ++VR+ I + Q+ ++ I Sbjct: 765 SERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLP 824 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V+ D + QVI NL+SNA+KF+ GG+V V +G I++ D+GPGI Sbjct: 825 GVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFR 884 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473 + F Q + + G GLGL I+++I+ HGGQ + G L P Sbjct: 885 DRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTTFYVDLAEYRP 944 Query: 474 NTRVLNFIPEDNHESTQYKC 493 NT +P + C Sbjct: 945 NTNTTVSLPPQSDRPRILIC 964 >gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] Length = 1193 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 11/265 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ + AK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 793 RMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 848 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L ++R+ +++ A++K Sbjct: 849 QQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQK 908 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQY 402 + +++ +L ++ D ++Q++LNLL NAVKFT G V + V G Sbjct: 909 QLVFECELEDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVSLRVSVLPQGHKQGIR 967 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG+ + S+ Sbjct: 968 MEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGEVTVSSE 1027 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486 L G + LP V +P Sbjct: 1028 LGRGACFVVELPLRWVA-ALPAVTP 1051 >gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 949 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 10/276 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + E + + + E+ N KSRFLA++SHE+RTP++ ++G S ++ + Sbjct: 549 EAGLDVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTS- 607 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 ++ K I +I ++LL +INEILD S++E+G Y L + L + L Sbjct: 608 ---ADDDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAAL 664 Query: 340 QLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + QEKN+E I+ + + D ++++++NL +NAVKFT G V + + Sbjct: 665 CSQVQEKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDA-GNVILRASLLNR 723 Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + D G G+ T+ F Q G GLGL I +S++ GG Sbjct: 724 SKDRLEILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGG 783 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S EG +P + + +S Q Sbjct: 784 HIWMESTPGEGSSFFVRIPFEPAEASLQISSVQSGQ 819 >gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 964 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ ++ +++AEE AKS FLA+MSHE+RTP+N+++GFS + + + Sbjct: 283 ITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLALKTNL----D 338 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +Y+ I S + LL LI +ILD S+IEAG+ + +L +++ + RA+ Sbjct: 339 KQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSVAALNANRAE 398 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EK +++ +L + D + QV+ NL+SNAVKFT G V V V + Q Sbjct: 399 EKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTE-GHVQVLVEPLHQQEQEL 457 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D+G G++ ++ + T F Q ++ G GLGL I ++++ GG +R Sbjct: 458 LLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEMMGGSISVR 517 Query: 460 SKLREGVEVIAIL 472 S+ + G + Sbjct: 518 SQEQVGSHFEFTI 530 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 142/268 (52%), Gaps = 8/268 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + S +++AEE + K+ FL +MSHE+RTP+N ILGFSE+++ + Sbjct: 533 EDITERKRLWSELVAAKEKAEESDRLKTCFLENMSHEIRTPMNGILGFSELLKEPLLDGS 592 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + EYI IH+SG+ +L++IN+++D+S+IEAG + + SL I + + + Sbjct: 593 KKD---EYIELIHQSGKRMLSIINDLIDISKIEAGEIAIQYTEASLDKIFHDLQAFFEPQ 649 Query: 343 AQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K + + + PS S + D+ + Q++ NL+ NA+K+TA G + +G Sbjct: 650 ATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNLVQNALKYTAS-GEICFGCT-KNGDF 707 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++D G GI + + F Q + +GVGLGL I++S++ GG+ ++S Sbjct: 708 LDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVREYEGVGLGLSISKSLVELLGGRIGVQS 767 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488 EG LP + +P++ ++ Sbjct: 768 SAGEGSVFSFSLPYNSAV-SLPKEIKQA 794 >gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii] gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 771 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 178/484 (36%), Gaps = 29/484 (5%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 M +S + + + + + H+ TL ++ L + L L A Sbjct: 315 MTKSLQERNQAISANLETIRRHVTQLTTLNQSSTAITSTLDLDRLLSIVLQLLSANLGFA 374 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 + + + L + E L + G Sbjct: 375 RMVLFLWDSERGVATVGQMLGM-----------------PQEAEEAARRLEIPVYEDG-- 415 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 ++ + +A IS L SF + + + Sbjct: 416 ------GFAAELLIHGKPLFVPSIEPVADRISPAVLPWLRQVGISSFVAAPLRSQQRILG 469 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKI--LSCQAEKDDLIAELEVAKSLSDET 238 + + T ++ + D L ++ Sbjct: 470 YLGADRGTQPCSQEDLDLLITIASHVAVAVDNARAYTELATLTDHLERRVQERTHELQTV 529 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 +R +E + +S+F++ SHELRTP+ +I GF E + G L+ E + Y+ + + Sbjct: 530 NERLQEHDQRRSKFVSVASHELRTPMTSIKGFVENMLDGLTGQLS-ERQEHYLQRVKHNV 588 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L +IN++LD SR++ GR E+ + + + VR+ + Q A EK+I + Sbjct: 589 DRLTRIINQLLDWSRLDVGRIEIKPEPLHIDEFVRDVVESFQTLAAEKSIVLDVLPCEQP 648 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +V AD + Q++ NL+ NA+KFT G V V+ R I++ D G GIA E+P Sbjct: 649 ITVRADRDKLEQILWNLVGNAIKFTPPSGHVSVSCSICDARYAQITVADTGCGIAPDELP 708 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 V F + A+ S QG LGL I +S++A HGGQ + S+L G + LP Sbjct: 709 HVFNEFSKVESAMPS-SQGAQLGLFITKSLVALHGGQMCVDSRLGVGTQFYFTLPLDNAP 767 Query: 479 NFIP 482 P Sbjct: 768 ASTP 771 >gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein protein [Shewanella amazonensis SB2B] gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1021 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 10/251 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ELE + E R++AE + K+ FLA MSHE+RTP+N +LG ++E + Sbjct: 375 ELEHKNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSI----Q 430 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K Y+ S + LL L+N+ILD S+IE+G++E+ E LI ++ + I +RA+ K Sbjct: 431 QKHYLDVASTSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAK 490 Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQ 401 +++ I L V D +RQV++NL+SNA+KFT + G + V V + Sbjct: 491 GLKLLLDISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEV-GWIAVRVQASEDTANGVSL 549 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +SI+D G GI++ + + + F Q G GLGL IA+ + G + S Sbjct: 550 MVSIEDTGIGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISA 609 Query: 462 LREGVEVIAIL 472 G L Sbjct: 610 EDAGSTFKFHL 620 >gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1260 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 97/258 (37%), Positives = 157/258 (60%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + A+ + R AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP+ Sbjct: 1003 RDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPV 1062 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ Y++Y+ DI+RSG H+L+L+N++LD+S+IEAG+ E++ A+SL D + E + M+Q + Sbjct: 1063 ANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQ 1122 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I L V AD + +RQ+ LN+LSNA+++T GG+V V+ + + Sbjct: 1123 ANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVV 1182 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G G++ EI L F Q + + G GLGLP+ ++++ + +F I S Sbjct: 1183 MRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRARFTINSTP 1242 Query: 463 REGVEVIAILPNTRVLNF 480 EG V P+TRVL Sbjct: 1243 GEGTLVEVAFPSTRVLAE 1260 >gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1441 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 8/268 (2%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + Q +++ +L E R RA + KS+FLA++SHE+RTP+N Sbjct: 856 VIRDITESKQIQHSLEEVNHQLSCKNKELVEARDRALKAIQMKSKFLATISHEIRTPMNG 915 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G +E++ + N E I++SG+ LL++ ++ILD S+IEA + EL Sbjct: 916 VIGMAEMLLTSKL----NPEQYEIADTIYKSGELLLSITSDILDFSKIEASKLELEMIEF 971 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 I + L + +K I + + D +RQ+ILN+ NA+KFT G Sbjct: 972 DFIGCIEGVFNTLSISLDKKIEIILLFEKDVPTKLIGDPNRLRQIILNIGHNAIKFTDKG 1031 Query: 387 ---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G + V +SI+D G GI + + F Q + G GLGL Sbjct: 1032 HVFGHISVVSRERGTVQICVSIQDTGIGIEPEKRDMLFEPFSQLDSSTTRKYGGSGLGLA 1091 Query: 444 IAQSIMANHGGQFLIR-SKLREGVEVIA 470 I + G + S+ +G Sbjct: 1092 ICSPLAKLMDGDVSLDWSQPGKGSIFSI 1119 >gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 832 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 133/265 (50%), Gaps = 20/265 (7%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIEL-------------ETMGPLNNETYKEY 290 E + K+ F++++SHELRTP+ +ILGF+++I+ + K+ Sbjct: 370 EVDNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTERAINQVKDN 429 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 IG I GQ L LIN++LD++++E+G+ + I + +++ + + +++++ Sbjct: 430 IGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPLWKPQDLQM 489 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 ++ ++ ++ D + QV++NL+SNAVKFTA G + T + +S+ D G Sbjct: 490 VVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTAS-GSITCTA-RSHADEIMVSVSDTGS 547 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI+ + + F Q + +G GLGLPI + I+ +H G+ + SKL EG Sbjct: 548 GISPEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKLGEGSSFHF 607 Query: 471 ILPNTRVLNFIPEDNHESTQYKCYA 495 L +P++ + + A Sbjct: 608 TL-----AIGVPDEETQIPAHITKA 627 >gi|254444998|ref|ZP_05058474.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259306|gb|EDY83614.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 637 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 24/343 (6%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + V L +I++ VL L+ + ++ T + + + + D Sbjct: 165 FIYGRLIMFVVLVLASILTAIVLASRLSERILRPITELAKTTRRITEDHDVSTRQKRISD 224 Query: 223 D-----------LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 D ++AE+E + ++ AE + AK FL+ +SHELRTPLN I+G+ Sbjct: 225 DETGQLVDAFNEMMAEIEKREDALVLAKETAEASSRAKDDFLSVISHELRTPLNPIIGYV 284 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ +T + ++ +G + + HL +LI+ ++D SR E G L+ + + Sbjct: 285 EILLRKTAEAED----RKQLGLVKQYATHLQDLIDHVIDYSRFERGIVNLTLEPVDYQRL 340 Query: 332 VRECIIMLQLRAQEKNIEIFQKID------PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + I +L+ +A+ K + + + +++ AD ++QV+LNL++NAVKFT Sbjct: 341 CQNVINLLERQAKSKGVTMTCQHQFGNDAFKEKNTLSADRVKLQQVVLNLVANAVKFTES 400 Query: 386 GG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G ++ + T+ I ++D G GI+E + V F Q +++ G+GLGL Sbjct: 401 GSIKILTFIDKTADHDALLRIEVQDTGIGISEEDREKVFKPFSQIDVSLTRQYSGLGLGL 460 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 I + I+ GQ S G +P P+ + Sbjct: 461 AITKKIVEAMNGQIGFNSDKGVGSVFWIEVPVNFSNEIDPDPS 503 >gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1209 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 8/260 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R+ E K+ F+A +SHELRTPL +I G ++ +G L I ++ Sbjct: 709 ERRAIE---RMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKN 764 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILD+ +IE+G+ + L ++VR+ I + Q+ ++ I Sbjct: 765 SERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLP 824 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V+ D + QVI NL+SNA+KF+ GG+V V +G I++ D+GPGI Sbjct: 825 GVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFR 884 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL----P 473 + F Q + + G GLGL I+++I+ HGGQ + G L P Sbjct: 885 DRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTTFYVDLAEYRP 944 Query: 474 NTRVLNFIPEDNHESTQYKC 493 NT +P + C Sbjct: 945 NTNTTVSLPPQSDRPRILIC 964 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 151/307 (49%), Gaps = 5/307 (1%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P + ++ + +I L + FT + ++ S E L Sbjct: 983 PPLRGWLAAPLVGRNGQNIGLIQLSDKYDGEFTAADEAVLVQLAQMASVSVENVRLYEAE 1042 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A+S ++ +R+ AE N K FLA +SHELR+PLN ILG+S +++ G L+ K Sbjct: 1043 KQARSAAEASREEAEAANRIKDEFLAVLSHELRSPLNPILGWSRLLQN---GKLDEAKAK 1099 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + I R+ + + LI ++LD+SRI G+ L+ S I+L +++ I ++L A+ +I Sbjct: 1100 QAVNIIERNAKLQVELIEDLLDISRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSI 1159 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 I +D + V D ++QV+ NLLSNAVKFT GG V + + + Q IS+ D Sbjct: 1160 RIEVNLDGEIGLVSGDSTRLQQVMWNLLSNAVKFTPTGGLVEIRLEQVGNQAQ-ISVSDT 1218 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVE 467 G GI+ IP V F Q A G+GLGL I + ++ HGG S+ G Sbjct: 1219 GKGISPDFIPYVFDYFRQADSATTRKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGAT 1278 Query: 468 VIAILPN 474 LP Sbjct: 1279 FTLKLPL 1285 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%) Query: 233 SLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 +E RKRAE E + AK+ F +++SHE RTPL +L E + ++ ++ Sbjct: 312 QAYEEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLT---ADDLSQEQRQ 368 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + IHR+G LL L+N +LD SRIEAGR + L E + + ++ ++ Sbjct: 369 EMTLIHRNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQ 428 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 +P V+ D + ++ILNLLSNA KFT G + +T+ + I++ D G Sbjct: 429 FSVTCEPLPELVYVDRQMWEKIILNLLSNAFKFTFS-GAIALTLRQVQHQ-VEITVTDTG 486 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + E+P + F + A ++G G+GL + Q ++ HGGQ + S G Sbjct: 487 IGIPQAELPHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFT 546 Query: 470 AILPNTRVLNFIPEDNHEST 489 +P + +P + ++T Sbjct: 547 ITVPMG--IAHLPPERIQAT 564 >gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 533 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLIES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + + ++ + Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QVI N ++NA+KFT G++ + + Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA ++ V F + S +G GLGL I +SI+ + GG + S++ Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518 Query: 464 EGVEVIAILPNT 475 G P Sbjct: 519 VGSRFWFTHPLR 530 >gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM 17393] gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM 17393] Length = 536 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 13/265 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +I + + + E +++AEE N KS FLA+MSHE+RTPLN+I+GFS ++ + + Sbjct: 278 MIDKRKALEQDLREAKEKAEEANRLKSAFLANMSHEIRTPLNSIVGFSSILTMT----ED 333 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E KEY I + LL +++++L+LS++EAG ++L + L D+V E +++A Sbjct: 334 MEEKKEYNQLIQHNNTLLLKVVDDVLELSKLEAGDFKLYPAWFCLSDLVVESAAECRMKA 393 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +++ V D + +++++ N LSNA+K T G + + G I Sbjct: 394 DG-KLDVRVDKPEQDYMVELDAQYVKRILSNFLSNALKNT-QSGHIDIAYSMV-DGGVKI 450 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+KD G GI + ++P V F + S QGVGLGLPI +SI + GG + S++ Sbjct: 451 SVKDTGCGIPQDKLPVVFDRFEKVD----SFAQGVGLGLPICKSIAESMGGTIGVTSEVG 506 Query: 464 EGVEVIAILPNTRVLNFIPEDNHES 488 G LP P+ ++E+ Sbjct: 507 AGTAFWVTLPCA--TAPTPQLHNEA 529 >gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia thailandensis MSMB43] Length = 1084 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 110/509 (21%), Positives = 181/509 (35%), Gaps = 57/509 (11%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF--------PMWSLITLAVYAANLS 88 + + L +A G W + + L AA + Sbjct: 362 LRRDAPLAHRPYRAPRGTIGLGLAAAGVWMLSGVLGFEQYGLPTVVCGLAFAYSGAALFA 421 Query: 89 LGKKVMNSD-----IKIGEVYVWRIWLLVGQIAIGLCWTLLTL------VEPGTWTPEYL 137 K I + +L+ G + L T + Sbjct: 422 WRKWEDRRRAGLPGIGDTLHFKLTGAMLLVLALDGAGYMLAISQIARKNGPMETALEDIF 481 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-----STQAIMSMHVLDIS---- 188 T+ + + + + + L + A+ + Sbjct: 482 VAVAMLTVTVGIVLPGMIAHSADELSRAARRLATGTLKDFSNAMSALGRGDLDGAYANFA 541 Query: 189 --------------LAGMLATALSFFTYITYHLFKSNVKILSCQAE----KDDLIAELEV 230 +A S L + + ++E DL + Sbjct: 542 PDRLRGHGGDELGRMAESFNMLQSEIGIAATGLGDAREGLRRARSELTNANLDLQRAHDS 601 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + + + +E N AKS FLA+MSHELRTPLNAILG+++ E Sbjct: 602 LEERVRQRTRELQEANRAKSIFLANMSHELRTPLNAILGYAQWFRR---DAAAGERQVRA 658 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I +SG+HLL LI +ILDL++IEAG+ +L L ++ + +++++++EK + Sbjct: 659 ASIIKQSGEHLLMLITDILDLAKIEAGKLDLCPGPAGLDGVLSSVMDIIRVKSEEKGLAC 718 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISI 405 L VW D+K +RQV+LNLL NAVKFT+ GRV + V + Sbjct: 719 VLDAASDLPPSVWIDDKRLRQVLLNLLGNAVKFTSR-GRVELRVSLLQPADELARVRFEV 777 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIA + ++ F Q A A G GLGL I++ ++ GG+ + S+ G Sbjct: 778 RDTGVGIAHDRLTSIFDPFEQAGEAQSRA-GGTGLGLSISRQLVRLMGGEIEVESEPGAG 836 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQYKCY 494 L V+ P + Y Sbjct: 837 SRFWFDLELA-VVEVAPARAQPAQSITGY 864 >gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 614 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 87/362 (24%), Positives = 166/362 (45%), Gaps = 13/362 (3%) Query: 122 TLLTLVEPGT-WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 +L L E + + I +A AL N + F++ +++A+ I+ Sbjct: 255 GVLYLGEYSPIYNIDGEVIGMTAVGTPQTPFMALLNSTIQKIFFIAATSLLIAVLVAIIL 314 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE-----KDDLIAELEVAKSLS 235 + ++ + + + + AE +++ + K + Sbjct: 315 NRKIIVPIKKLKNSAEIFGHGKYDERVHIETGDEIEELAESFNSMAEEISRSDQKLKKDA 374 Query: 236 DETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++ + +E + KS ++ +SHELRTPL +ILG+ ++++ ET G L NE KE++ Sbjct: 375 NDLKHSYDELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKL-NEKQKEFVS 433 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I + + L + + + DL ++ + + +++ + V E I LQ A +NI + + Sbjct: 434 VISENSERLKRITDNMSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNIILLE 493 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 +D S + D+ + QV+ NL+ NAVKF+ +V VT G+ ++ I D GPGI Sbjct: 494 DVDDS--YIKGDKSKIHQVLANLIENAVKFSKKQTKVTVT-GFEDNGNIHLEITDQGPGI 550 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + + F Q + K G GLGL + + I+ +HGG + SK+ +G V + Sbjct: 551 PKEHLDKIFDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLF 610 Query: 473 PN 474 P Sbjct: 611 PL 612 >gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217] gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217] Length = 1659 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 8/264 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I E + ++ A+ + AKS FLA+MSHE+RTP+NAILG ++++ M P Sbjct: 873 NRDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDMTP 932 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++Y+ + Q LL L+N+ILD S+I+AG+ + SL +I+RE ++L Sbjct: 933 ----QQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAA 988 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSG 398 + K+IE+ +DPS+ V AD++ ++QV+LNL NA+KFTA G + + +S Sbjct: 989 NMRRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSH 1048 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + IS+ D G GI ++ + F Q + G GLGL I + ++ G + Sbjct: 1049 KVRLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELE 1108 Query: 458 IRSKLREGVEVIAILPNTRVLNFI 481 + S+ +G + V I Sbjct: 1109 VESQEGQGSRFWFDIEFELVETPI 1132 >gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 631 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 29/372 (7%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 I+ + ++ + + A++ + V + + Sbjct: 156 AHNQLFSQGIFIALIEMLLSAGLMILLGYFLTRHLAGLTQASEAVAAGNLTPPPVPEGND 215 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A F ++ + + +++ + + E+ L + AE AK Sbjct: 216 EVGRLGAA--FNAMSRAVAERILELTASRDEQARLA--------------RSAETAARAK 259 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + FLA+MSHE+RTP+N ILG +E+ T+ E +EY+ + SG +L+ ++N+IL Sbjct: 260 TSFLATMSHEIRTPMNGILGMTEL----TLATDLTEEQREYLTWVKSSGDNLMRVLNDIL 315 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 D S+I AG L + L ++ + + A K + ++ D L + D + Sbjct: 316 DFSKINAGELNLEHIPLDLSSLLDSVVALYSSVAANKGLRLYWAADTELPEHLLGDPVRI 375 Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTS 423 +QV+ NLLSNA+KFT G + V T + ++ D G GI ++ + Sbjct: 376 QQVLNNLLSNALKFTEHGEVAIRVHCEKTLENSKVWRVHFTVADTGIGIPASKLGNIFDP 435 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP- 482 F Q G GLGL I + ++ G+ + S + EG ++ + P Sbjct: 436 FAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESAVGEGTRFHLLIHLDQAEKSTPK 495 Query: 483 --EDNHESTQYK 492 E + E+ Q K Sbjct: 496 IAELDKEAAQCK 507 >gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 836 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 20/334 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + A + + L + I EL+ ++ Sbjct: 372 VVARVFSTRQAESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRDITELKRLEA 431 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 S + + AE+ N AKS FLA+MSHE+RTP+N ++G ++ + + + + Y+ Sbjct: 432 ESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMGMLDL----ALMNNPDPSVRSYLQM 487 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 +S HLLN++N+ILDL+RIEAGR E+ + + L A++K + Sbjct: 488 GKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAEKKGLRFSAV 547 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----------- 401 I + + DE + QV NL+ NA+KFT G + V V Sbjct: 548 IASDIPSRLIGDEGRLIQVFTNLIGNAIKFTTK-GEITVKVTVARPTDIGMQEACPHTDA 606 Query: 402 ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + SI D G GI ++ + SF Q + G GLGLPI++ ++ G+ Sbjct: 607 ICMFASISDTGIGIPADQLEKIFESFAQVRGDLHLQHFGTGLGLPISRQLVELMDGKIWS 666 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 S+L +G + N PE + K Sbjct: 667 ESELGKGSTFYFTVTLQEAPNAQPETRPPRRKSK 700 >gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 599 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++E + Sbjct: 360 ITQLKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGFSSMLEE----AEDQ 415 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +YI I + + LL LI++ILDLS+IEA +++ ++ + + +Q++ Sbjct: 416 EEKHQYITIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQLCNDLFQAIQMK-T 474 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ K + + +D+ + QV+LN ++NA+KFT+ G + + G S Sbjct: 475 SPQVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQI-DGNEVKFS 532 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + S G GLGL I QSI+ GG+ + S+ + Sbjct: 533 VQDTGMGIEPEKQEAIFTRFVKL----NSFIPGTGLGLSICQSIVTQLGGKIGVESEPGK 588 Query: 465 GVEVIAILP 473 G P Sbjct: 589 GSCFWFTHP 597 >gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC 15579] gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC 15579] Length = 617 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 149/277 (53%), Gaps = 5/277 (1%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S ++ ++ Q + + L ++E L +E+R E N + FLA++SHEL+TPLN I Sbjct: 322 SILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISHELKTPLNVIFT 377 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 ++++L + + ++YI I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 378 AVQILDLYKKDANSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIV 437 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++V E + + A+ KNI I D + D + ++ILNLLSNA+KFT GG + Sbjct: 438 NLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNI 497 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +V + IS+KD G GI + +I + F Q ++ ++G G+GL + +S + Sbjct: 498 YVNIK-DCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFV 556 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G I+S + +G E I +P V ++N+ Sbjct: 557 NMHEGNIDIQSVIGKGSEFIINIPVKLVKEDSEKENN 593 >gi|171060040|ref|YP_001792389.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777485|gb|ACB35624.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 762 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 14/300 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + K + + ++ L A +E + + + AE NLAK FLA+MSHE Sbjct: 338 WVGVAVDITKLKLAEAELERHRNHLEAMVEERTAALSDAKLAAEAANLAKGSFLANMSHE 397 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G S ++ + P + +G I SG+HLL +IN+ILDLS+IEAG++ Sbjct: 398 IRTPMNAIIGLSALLLRKPQEPDTADK----LGLIEASGKHLLGIINDILDLSKIEAGKF 453 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 LS+ + + + M+ A K I++ ++D + D + Q +LNL+SNA Sbjct: 454 HLSQERLDVRVLPVNVCSMVAEAAHAKGIKLKTELDFLPPRLLGDLTRITQALLNLVSNA 513 Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT G V V + D G GI+ + + + F Q + Sbjct: 514 IKFTRT-GSVTVRAVREEEDQDSILLRFEVIDTGIGISAQAMSRLFSPFEQADASTVRNF 572 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-----VLNFIPEDNHESTQ 490 G GLGL I + + GG S L EG + + + + +P +N + Q Sbjct: 573 GGTGLGLVITRRLAQLMGGDAGAASVLGEGSTFWFTVRLKKTDVENLDSTMPTENAAAVQ 632 >gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 10/319 (3%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 ML A+F + +V+A + + + L S+ Sbjct: 150 MLKIAIFGALLGIVMATVLSIFLFRKFTNPLIEMEKTAKAIAEGDFGKQLNVSSDD---- 205 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E L L + E E + + ++ +SHELRTPL I GF+E + Sbjct: 206 --EVGRLALSLNRMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDG 263 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + E K Y+ +I L +L+N+IL L +E G E + L +V + Sbjct: 264 IV--KSKEQEKFYLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVE 320 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 ++ A K + P +V+ + ++QV+ NL+ NA+ + GG V V +G Sbjct: 321 RMKQIASAKKTIVKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLRE 380 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +I++KDNGPGI + E+ + F + + G GLGL I + I+ HGG+ Sbjct: 381 -GFAFIAVKDNGPGIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVT 439 Query: 458 IRSKLREGVEVIAILPNTR 476 + S+L +G LP + Sbjct: 440 VESELGKGATFTVFLPLSE 458 >gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp. m3-13] Length = 594 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + G +E KE I+ + Sbjct: 360 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAG--TDEEKKELASVIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+EAG L+ +++ V + Q A+EK+I + +++ + Sbjct: 418 LVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSRVEGDGV-IQM 476 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QV+ NL+ NA++ TA G + + + I +KD+G GI E ++P V Sbjct: 477 DVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNG-VKIDVKDSGHGIPEEDLPFVFER 535 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I ++I+ H G + SK EG +P Sbjct: 536 FYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIPQK 587 >gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 1323 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 154/256 (60%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A+ T+ AE N K++FLA +SHE+RTPLNAI+GFSE++ E +G + Sbjct: 1065 RDITHWKKAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERLGRI 1124 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +N+ Y+ Y+ DI+RSG H+L+L+N++LD+++IEAG+ E+ A+ L V E + +LQ Sbjct: 1125 DNDRYRGYLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAILQAE 1184 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A I I + + V AD++ MRQ++LNL+SN++KFT GG+V V+ + Sbjct: 1185 ANADRIIIRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSGEVV 1244 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G G++ E+ L F Q + A SA +G GLGLP+ ++++ + F I S Sbjct: 1245 LRVRDTGVGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIESTP 1304 Query: 463 REGVEVIAILPNTRVL 478 EG V P RVL Sbjct: 1305 DEGTLVEIHFPVQRVL 1320 >gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1154 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 159/335 (47%), Gaps = 9/335 (2%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + A+LL+ ++ + N L ++ P + + +M L +L + Sbjct: 582 FGRFASLLLVIN---IINAALMMLIYRQMAPSSLNEAVLLKDTMLALFFTLLIVSGVLSW 638 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + + + I + +++AE N AKSR+L +SH Sbjct: 639 LFVLAHESRVVAQKESNRQTRKLIREIDAHQETDRALQNAKEQAERANEAKSRYLTGISH 698 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPL +I+G+++++ + P ++ + IHRSG +L +LI +LD+S+IEAGR Sbjct: 699 ELRTPLQSIIGYAQLLSEKANTPSG---HQNGLDIIHRSGLYLADLIEGLLDISKIEAGR 755 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 ++L + + L ++ + M ++A++K I++ KI L V DEK +RQ+++NLLS Sbjct: 756 FDLYRNTVDLPKLIDQLNSMFAMQARDKGIQLQSKILAPLPQHVVTDEKRLRQILINLLS 815 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVK+T G V V + + I+D G GI EG + + F + G Sbjct: 816 NAVKYTPK-GSVLFEVNYR-NQVAEFVIRDTGVGIKEGHLKRIFDPFERVRDVSTGNLPG 873 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GLGL I + + GG S + EG E L Sbjct: 874 TGLGLTIVKLLTEIMGGDIQAHSVVGEGSEFRVSL 908 >gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 624 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 7/241 (2%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHE+RTPLN +LG ++++ L + N+ KE++ I SG+ LL++I +IL Sbjct: 243 SQFLANMSHEIRTPLNGVLGIAQLLALTDL----NDRQKEFVQTIRSSGRALLSIIEDIL 298 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368 DLS+IEAG+ +L + + D++ E + A+ K + + P LS V D + Sbjct: 299 DLSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRV 358 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 RQ++ NLL NA+KFT G V V WT + + D GPG++E V F Q Sbjct: 359 RQILSNLLGNAIKFTET-GEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQAD 417 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHE 487 ++ + +G GLGL IA+ ++ GGQ + S+ +G P L+ P++ + Sbjct: 418 MSHSRSHEGSGLGLAIARELVVLMGGQIGVHSRPGQGACFWFEFPARPADLDDEPQETAQ 477 Query: 488 S 488 S Sbjct: 478 S 478 >gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22] gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22] Length = 513 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 263 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 321 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL ++ + Q Sbjct: 322 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 380 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H T+ + Sbjct: 381 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGYTLDNRNADSVQ 439 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + + F + + +QG GLGL I ++I+ + G ++S++ Sbjct: 440 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 495 Query: 463 REGVEVIAILPNTRVLN 479 +G LP R Sbjct: 496 GKGSCFTVTLPFDRKTE 512 >gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 513 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 263 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 321 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL ++ + Q Sbjct: 322 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 380 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H T+ + Sbjct: 381 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGHTLDNRNADSVQ 439 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + + F + + +QG GLGL I ++I+ + G ++S++ Sbjct: 440 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 495 Query: 463 REGVEVIAILPNTRVLN 479 +G LP R Sbjct: 496 GKGSCFTVTLPFDRKTE 512 >gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 499 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 9/257 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI++ILDLS+IE+ + + S SL ++ + Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKE-QAMKP 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--TVGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H T+ + Sbjct: 367 ISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQK-GYIHFGYTLDNRNADSVQ 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + + F + + +QG GLGL I ++I+ + G ++S++ Sbjct: 426 IFVEDTGSGIPQECLNEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVKSEI 481 Query: 463 REGVEVIAILPNTRVLN 479 +G LP R Sbjct: 482 GKGSCFTVTLPFDRKTE 498 >gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] Length = 589 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHEL+TP+ +I GF+E + M + + +++ I + + Sbjct: 352 ELKKLEQVRKDFVANVSHELKTPVTSIKGFTETLLDGAM--HDEQLRDQFLHIIWKESER 409 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +LI+++L+LS+IE ++L+ +L +V E + +L+ +A+EK I+I + S Sbjct: 410 LQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSF-D 468 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + ++Q+ +NL++NA+ +T+ GGR+ + + G + D G GI E EIP + Sbjct: 469 LEGDPERLKQIAINLVNNAITYTSNGGRIDLALK-DHGDVVEFEVNDTGIGIRESEIPRI 527 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A G GLGL I + ++ H G+ L+ S+ +G R Sbjct: 528 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQGKILVESEFGKGTTFTIQFHRYRDDEE 587 >gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1148 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 148/316 (46%), Gaps = 6/316 (1%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L ++ P + + +M L +L + F + + Sbjct: 594 ALMLLIYRQMSPETPSEAILLQDTMWALFFTLLIVSGVLSWLFLLAHESRVVAQKESNRQ 653 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + I + + ++ AE N AKSR+L +SHELRTPL +I+G+++++ + Sbjct: 654 TRKLVKEIDAHQETDRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSDK 713 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 P ++ + I RSG +L +LI +LD+S+IEAGR++L + + L +++ + Sbjct: 714 KDAPT---QHQNGLDIIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQLES 770 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 M +++A+ K IE I L V DEK +RQ+++NLLSNAVK+T G+V + + Sbjct: 771 MFEMQARGKGIEFELNIRAPLPRLVITDEKRLRQILINLLSNAVKYTQK-GKVTFDINYR 829 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I D G GI E + + F + + G GLGL I + + GG Sbjct: 830 -NQVAEFHIVDTGVGIKEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGDL 888 Query: 457 LIRSKLREGVEVIAIL 472 RS++ G E L Sbjct: 889 KARSEVGSGSEFTVSL 904 >gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 467 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 154/396 (38%), Gaps = 13/396 (3%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIW-LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143 + + + + W + G T P T + + Sbjct: 77 LPVEWQRPLDDEGGTPPPRETWERRGFFSLADSQGKVLVSGTPEYPLNETLNQQALKDGS 136 Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY- 202 + + + QA++ + +A ++ L+ Sbjct: 137 PITVNGETVGFLLSPRRLVNLRPEEARFLTRVNQALVIGGAGALLIALIIGIFLARTLTR 196 Query: 203 ----ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +T + L Q E ++A++ + +++ A N + + A ++H Sbjct: 197 PIKDLTLAATRMAQGELEQQVEVRSQDEIGQLAQAFNLMSQQIA-RANQLRRQMTADIAH 255 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 +LRTPL I G+ E + + P + + I++ + L ++N++ LS+ +AG Sbjct: 256 DLRTPLTVIAGYIESMRDGVLQPTP-----QRLDLIYQEIERLQKMVNDLRMLSQADAGE 310 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L + +++ + Q A++ I + + +L ++ DE M QV+ NL+SN Sbjct: 311 LNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLPAILVDEDRMMQVLDNLISN 370 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+++T+ GG + + G+ + + D G GI E+P + F + + S G Sbjct: 371 ALRYTSAGGEITLRAKQ-DGKQVRLQVADTGTGIPSEELPRIFERFHRVDPSRHSESGGS 429 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GLGL I ++++ GG+ S+L +G + P Sbjct: 430 GLGLAIVRALVEAQGGKVSAESELGKGTTITTEFPA 465 >gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1022 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 10/253 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + D I + E + + AE+ + KS FLA+MSHE+RTPLNAI+GFS+++ Sbjct: 622 RVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ 681 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 E Y+ I+ + + LL LIN+ILDLS++E+G EL L + ++ Sbjct: 682 GDKEE----YMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 R +++ S+ V D+ + QV+ N ++NA+K+T G + + G Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQ-GTIEMGYEVV-DTG 795 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI E + V F + QG GLGL I ++I + GG S Sbjct: 796 IRLYVRDTGIGIPEEKKRKVFHRFEKLDE----FAQGTGLGLSICKAITESMGGSVGFES 851 Query: 461 KLREGVEVIAILP 473 + G A+LP Sbjct: 852 EYSRGSLFWAVLP 864 >gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola] Length = 1328 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + RA E+ + + + + V D +RQ+ILNL+ NA+K T G V V + Sbjct: 826 LKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKVAIS 884 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S +G Sbjct: 945 LVTLMGGRMWVESDAGKGSVFYFT 968 >gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437] Length = 463 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 140/309 (45%), Gaps = 21/309 (6%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE--------VAK 232 + I LA +L L F + + V+ ++ E IAE Sbjct: 158 QFGEMRIFLAILLILTLGFSFLLVAASTRMIVRPVTTLTEATKKIAEGNYRIQLNTSRQD 217 Query: 233 SLSDETRK------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + R E + F++++SHE+++PL +I GFS+ + E++ E Sbjct: 218 EIGNLARHFSMMANSLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTLRTESL---PEEE 274 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y+ I + L +L ++L L+ ++ L ++ + +RE + ML+ ++K Sbjct: 275 REQYLSIIENESRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDK 334 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + I + P+ + AD K + QV NLL+NA+KFT GG + VT+ G + ++ Sbjct: 335 ELAIKTDLPPT--RIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVR 392 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKS--AEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 D G GI ++P + F + + E G GLGL + + ++ HGG + S+ Sbjct: 393 DTGVGIPGEDLPHIFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGA 452 Query: 465 GVEVIAILP 473 G + LP Sbjct: 453 GTGIRVWLP 461 >gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1172 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 10/296 (3%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK-------RAEEENLAKSRFLASM 256 L ++ + ++ LE K+ ++ R E+ + KS FLA+M Sbjct: 433 QARLQSHQAELEQTNTQLEEYAQRLERQKAELVSAQQSLSANAARLEQTSRYKSEFLANM 492 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+ L + +++ G L +E Y IH S LLNLIN+ILDLS++EA Sbjct: 493 SHELRTPLNSSLILARLLQENRGGNLTDEQV-HYAQTIHSSNSDLLNLINDILDLSKVEA 551 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G + + L ++R M A+ K + + P ++ D + + Q++ NL Sbjct: 552 GHIVMEPETVVLDTVMRSMREMFSPIAEGKALTLTITRAPGTPGTIVTDHQRLVQILRNL 611 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNA+KFT G V + + ++D+G GIA ++ + +F Q + Sbjct: 612 LSNALKFTER-GEVALGISVDGAGEIRFEVRDSGIGIAADKLEMIFEAFQQADGSTSRHY 670 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 G GLGL I++ GG+ + S+ G LP + D Q Sbjct: 671 GGSGLGLSISRKFAELLGGRIDVVSEPGAGSVFTLRLPLDLAMPAAALDPARDAQQ 726 >gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 607 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ + F+A++SHELRTPL + + E + + E ++ + ++ Sbjct: 371 EKIDMERREFVANVSHELRTPLTTMRSYLEALAEGAW--RDEEIAPNFLDVTQNETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y L++ I I ++ +++N+ +K+ + V Sbjct: 429 RLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFEMT-KQQNVTFERKLPDHSAFVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG+V ++ +S+ D G GI + I + Sbjct: 488 IDEDKLTQVLDNIISNALKYSPEGGKVTFSIE-EKDEFIVVSVSDQGVGIPKENIDQIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG+ S +G + LP R Sbjct: 547 RFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEGKGTTISFSLPYVRSEE 603 >gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 587 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 17/243 (6%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K F+A +SHELRTPLNAILG+S+++ G L++E ++ I I R+ + LI Sbjct: 166 NRMKDEFIAVVSHELRTPLNAILGWSQLL---IGGKLSSERTQQAIQTIERNARMQAQLI 222 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +IL+++++ G+ LS +++L D++ + +Q A+ K + + ++DP V AD Sbjct: 223 GDILEMTKLTQGKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLDPLPRWVNADP 282 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGI 412 +RQ+ NLL+NA+KFT GG + V + ISI D G GI Sbjct: 283 VRLRQIFWNLLTNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGI 342 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAI 471 + +P V F Q + A+ G+GLGL I + ++ H G+ + S+ +G Sbjct: 343 SPEFLPHVFDRFRQADGSATRAQGGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTLH 402 Query: 472 LPN 474 LP Sbjct: 403 LPL 405 >gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 927 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 91/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQ++ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYAGDPTRIRQILSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 927 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909] Length = 565 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE + EL + ++L ++ I LQ +AQ K I+I +I+ + + Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVI-I 452 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ +++ +V V V + Y+ I+D G GI+E + + Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ ++S+ +G + Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562 >gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens DM4] Length = 803 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTPL+A++G+SE++ E E + + I S +HLL LIN++ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAGR L+ ++ ++ + Q +K + L ++ D+ + Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 406 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425 RQ ++NL+ NA KF+ G + + V G S+ D G G+ + +I + F Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL I ++ + GG + S EG LP Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 637 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 16/270 (5%) Query: 229 EVAKSLSDETR--KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + D + + AE + AKS FLA+M+HELRTPL AI+GF+EV+ N+T Sbjct: 244 ERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAIIGFAEVLRRSR---NLNKT 300 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 +G I + LL+++N++LD SR+EAG EL + + C ++ RA+ K Sbjct: 301 AARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDPAAMASSCAGLVAERAEAK 360 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI--- 403 + + + L + D + QV+LN LSNAVKFT G + V + T Q + Sbjct: 361 GLAVEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFT-SHGAITVALRQTIDGDQAVLRG 419 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA + F Q A+ G GLGL I++ I+ G+ + S Sbjct: 420 EVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISRRIIERMDGRIGVDSVEG 479 Query: 464 EGVEVIAI-------LPNTRVLNFIPEDNH 486 +G LP + P D Sbjct: 480 QGSTFWFEVRGPLADLPTQEAVETSPLDAD 509 >gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata] Length = 1329 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G +++ Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 769 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L RA E+ + + + + V D +RQ+ILNL+ NA+KFT G V + Sbjct: 826 LKSLASRANERKLNLAYDVSYKVPGYVVGDSFRLRQIILNLVGNAIKFT-ELGEVKAAIS 884 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S + +G Sbjct: 945 LVTLMGGRMWVESDVGKGSVFYFT 968 >gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 803 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTPL+A++G+SE++ E E + + I S +HLL LIN++ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAGR L+ ++ ++ + Q +K + L ++ D+ + Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 406 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425 RQ ++NL+ NA KF+ G + + V G S+ D G G+ + +I + F Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL I ++ + GG + S EG LP Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] Length = 1339 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 105/456 (23%), Positives = 180/456 (39%), Gaps = 30/456 (6%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSL--GKKVMNSDIKIGEVYVWRIWLL 111 L L+ A G ++ L + Y G + +G+ + Sbjct: 569 LTPLVAAQYGAFYLAEDGPAGTVLTLVGSYGRPAGADEGTGFALGESLVGQAARSHRIIA 628 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 Q+ G + L + L I +L + +++ + F + FL Sbjct: 629 TDQVPGGYVISS-GLGHTTPGSLIILPIVVDDQVLGVIELASFTAFTPVHRDFLGQLMET 687 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKILSCQAEKDDLI 225 + ++ I++ D L L +SN ++ A Sbjct: 688 IGVNVNTIVANARTDELLGESQRLTGELQARSEELQVQQEELQRSNAELEEKAALLASQN 747 Query: 226 AELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +++E ++ R+ E + KS FLA+MSHELRTPLN++L ++++ Sbjct: 748 SDIEAKNLQIEQARQELEARAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNP 807 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L EY G IH +G LL LIN+ILDLS++EAG+ +++ + L ++ Sbjct: 808 TRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDAT 866 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--- 394 + +K+++ P + + D+ +RQ++ NLLSNAVKFT GG V + + Sbjct: 867 FRPMTTQKSLDFTVTTAPDAPADLLTDDSRLRQILRNLLSNAVKFTERGG-VELRIEPAA 925 Query: 395 --------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G ++D G GI E ++ +V +F Q G GLGL I++ Sbjct: 926 GSEIPAGLRRRGAIVAFRVRDTGIGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISR 985 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 I GG S +G LP + + P Sbjct: 986 EIAQLLGGAVTAESTPGQGSTFTLYLPVSWADHEEP 1021 >gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 911 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 133/250 (53%), Gaps = 15/250 (6%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R R E + K+ F+ ++SHELRTP+ +I GF++++ + +GPL NET KE++G I + Sbjct: 662 RTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPL-NETQKEFLGIIQSNA 720 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + ++ +IN++LD+++IE G EL + + + + ++ LQ + Q++ + I L Sbjct: 721 ERMIAIINDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAGL 780 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------------SGRGQYIS 404 V AD + Q++ N++SNAVK+T GG + V GR I Sbjct: 781 PLVRADARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQID 840 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GIA ++P + F + +K G GLGL + + ++ GG+ + S + E Sbjct: 841 VRDTGVGIAPEDLPRIWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVESCINE 900 Query: 465 GVEVIAILPN 474 G ++P Sbjct: 901 GSVFSFVIPA 910 >gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1896 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 151/348 (43%), Gaps = 24/348 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +++L F + + FL + + I + + L + L Sbjct: 1122 VIELASLHAFSVTHVSFLEQLTQSIGVVLNTIEATMRTERLLQQSQQLTV-ELQSQQKEL 1180 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHEL 260 ++N ++ + + E+E + ++ R+ EE LA KS FLA+MSHEL Sbjct: 1181 TQTNEELAQKARQLAEQNVEVERKNTEVEQARRALEEKAAELALTSKYKSEFLANMSHEL 1240 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN+IL + + G L ++ +IH SG LLNLI +ILDLS+IE+G Sbjct: 1241 RTPLNSILILGQQLAENATGNLTT-KQIDFARNIHSSGTDLLNLITDILDLSKIESGTVT 1299 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 + IS + + A+ KN+ + +L + D K ++Q++ NLLSNA Sbjct: 1300 VEAEEISFSSLRDAIERNFRHIAEAKNVPLEVDFASTLPRAITTDPKRLQQILKNLLSNA 1359 Query: 380 VKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQ 426 KFTA G+V V V +I+D G GIA + + +F Q Sbjct: 1360 FKFTAQ-GKVAVRVFPALSGWVQGHPVLSRATHVIAFAIQDTGIGIAPEKQKLIFEAFQQ 1418 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ + GG+ + S REG LP Sbjct: 1419 ADAGTSRKYGGTGLGLSISRELATLLGGEIRLNSTPREGSTFTLYLPL 1466 >gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 927 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|167648714|ref|YP_001686377.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351144|gb|ABZ73879.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 593 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 175/448 (39%), Gaps = 23/448 (5%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 + + + +++A + F +W A L + + + Sbjct: 28 ALARRGNLYLRVVATVMIALMLQVFIGMSWTWIW-AGVYAAAQLLELLLIRALVHRPQAR 86 Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 RI + V + + L L + L AL + N L Sbjct: 87 RGRALRIAVAVMPVVTSAIFGFLAL-PLFASHERFAPTLGGLLLAGALLNVIIVNSSLRS 145 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 A + P V+ L +++ + I+ + ++ + Sbjct: 146 ATLSAAAPHVIYLLIVPLVARTANPDARLANALWLGVGLLIISVFVAARTLERALRAEAE 205 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 AE AEE AKS F+A +SHELRTP++AIL + + + Sbjct: 206 AKEEAERRR---------HEAEEAVAAKSAFVAMISHELRTPISAILAGAARLHSDV--- 253 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + K + I +G + L+N++LDLSR++AGR + +S L + + + + + Sbjct: 254 -PDAASKSHAQLIADAGAMMRTLLNDLLDLSRLDAGRMAVDQSPFDLRQAMADTLRLWRP 312 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 AQ K + + + +L V D +RQV+ NLLSNA+KFT G V V + Sbjct: 313 DAQRKGLRLRVEGAANLPRWVAGDSLRLRQVLNNLLSNAIKFTPR-GAVTVRLAARDEGE 371 Query: 401 QYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I + D GPG+ E ++ + T F Q + ++ G GLGL I++ + GG Sbjct: 372 HLIFEAIVADTGPGLTEEQLSRLFTPFDQLASSVVREHGGSGLGLVISRELTRLMGGDLT 431 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDN 485 + SK +G + RVL PED+ Sbjct: 432 VTSKPGKGSRFRLQI---RVLAAEPEDD 456 >gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] Length = 922 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 255 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 312 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 313 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 372 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 373 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 425 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 426 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 481 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 482 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 541 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 542 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 600 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 601 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 660 Query: 469 IAILPNTRV 477 LP Sbjct: 661 TVALPLREA 669 >gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 619 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 383 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWKDPNIAPQ--FLTVTQEETERMI 440 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ Y L + + + I + ++E+N+ + V Sbjct: 441 RLVNALLQLSKMDSTEYRLMKEWVDFTEFFNNVIDRFE-MSKEQNVIFNRSFSKKARFVD 499 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG + + G IS+ D G GI + + + Sbjct: 500 MDTDKITQVLYNVISNALKYSPEGGTITYRL-RDRGDMLEISVSDQGMGIPKENVDKIFE 558 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG +S+ +G + LP + Sbjct: 559 RFYRVDKARSRQMGGTGLGLAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLPLAKEEE 615 >gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 835 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 191/460 (41%), Gaps = 25/460 (5%) Query: 27 YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86 P ++ + ++ +E++ V + T + I L Y Sbjct: 150 APMRLLDETTLLMQQIEAIETVGLQQKQLATISTTSQAMVTFLVGIGLNLAIILWTYYLI 209 Query: 87 L--SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSAT 144 ++ + +D++ + + L+ I + ++ ++L + +A Sbjct: 210 CKETMKRNQAETDLQQNNLTLQEQTNLMQLILNSMSDGVIV----SDDKGKFLIVNPAAE 265 Query: 145 LLIALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA-TALS 198 + + + + L A ++ FP + + V ++ + + Sbjct: 266 QMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEG 325 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + ++ K L I E + A+ + ++ AE N AKS FLA+M+H Sbjct: 326 IWITVSGTPLKDASGTLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNH 385 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN ILG++++++ P ++ + IH+ G HLL LIN+ILDLS++E + Sbjct: 386 ELRTPLNGILGYAQILQR---DPATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQK 442 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +L + + + + +++A++K I ++V AD+K +RQV+LNLLSN Sbjct: 443 MDLYPQDFHFANFLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSN 502 Query: 379 AVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 A+KFT G V TV S ++D G GI + T+ F Q Sbjct: 503 AIKFT-DFGSVKFTVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGK- 560 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 +G GLGL I+Q I+ G + S +G + Sbjct: 561 RDRNSEGTGLGLAISQQIVQMMGSSIQVNSTPGKGSKFWF 600 >gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 982 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 143/256 (55%), Gaps = 9/256 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + AE N AKS FL++MSH++RTP+NAI+GF+ + N + Sbjct: 448 TADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNKK 504 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL D++ + ++ + Sbjct: 505 MVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHA 564 Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399 K +E++ +D + V+ D+ + Q++LNLLSNA+KFT GG + V + + Sbjct: 565 KQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQ 624 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I +KDNG G++E + + + F + + S QG GLG+ I ++I+ GG I+ Sbjct: 625 LYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQ 684 Query: 460 SKLREGVEVIAILPNT 475 ++ +G E I LP Sbjct: 685 TEQGKGTEFIVRLPLR 700 >gi|163795844|ref|ZP_02189808.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199] gi|159178877|gb|EDP63413.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199] Length = 700 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 117/463 (25%), Positives = 193/463 (41%), Gaps = 24/463 (5%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQ-NPIFPMWSLITLAVYAANLSLGKKVMNSDIKI 100 ++ R + + L ++ + + + + + AV A + G +++ Sbjct: 244 AAAMTRKARVDALLNGILGGLVAITASCHAVSAGEAAVIGAVGGALVPPGVRLLERLRID 303 Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 V + + W L + G + + + + Sbjct: 304 DAVG------AIPVHLLAGIWGTLAVALFGDPEILGRGWMEQLQIQAIGVVGIGAFAFAA 357 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSC 217 V L +V L L+ + + + H + + Sbjct: 358 AYVLLKAINLVSPLRVSVDGERVGLNAAEHEASSAMQDLIVSMEDHFRSGRMDDPIPVEI 417 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEE--------------NLAKSRFLASMSHELRTP 263 +E + + + + E +R E+ N AKS FLA+MSHELRTP Sbjct: 418 GSEVEPVARQYNRVVARVREDTRRMEQSVEALASAKSEAEAANRAKSAFLANMSHELRTP 477 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNA++GFS+++ E G L ++ YK Y DI +G+HLL L+N++LD SRIEAG+ EL E Sbjct: 478 LNAVIGFSDLLGNEPFGKLGDDRYKTYAEDIRMAGEHLLTLVNDLLDHSRIEAGKVELHE 537 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + +VR M++ A+ + + + ID L + ADE+ +RQV+LNL+SNAVKFT Sbjct: 538 IDVDVRAVVRRVGRMMEDLAKNRGLTLDLHIDADLPRLHADERLVRQVLLNLVSNAVKFT 597 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GGRV V + + D G G+ G+I + F Q + + G GLGLP Sbjct: 598 QSGGRVEVVGRLEPDDRIALVVADTGIGMDRGDIARAMEPFVQLNDRYDKSYGGTGLGLP 657 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + S++ HGG + S G V P R L + Sbjct: 658 LVNSMVRLHGGTLTVDSMKGHGTTVSVRFPEARTLRLSVDAAD 700 >gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 773 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 138/271 (50%), Gaps = 11/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++TR E + AKS FLA MSHE+RTP+N++LG +E + + + Sbjct: 365 ITEHRRLR-ELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRTPL----S 419 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KE + + SG+ LL+LIN+ILDL+R+E G+ L+ + ++ +V ML L+A+ Sbjct: 420 AEQKECMDVLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSLQAR 479 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 +KNI + I P + + D + ++Q+++NLL NAVKFT G V + V Sbjct: 480 QKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAVKFT-DNGEVSLHVSRAPDAVHDG 538 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++D G GI E + F Q S AI S G GLGL I++ ++ GG + Sbjct: 539 DLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTIRLE 598 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S+ G V V HE+ Q Sbjct: 599 SEPGVGTTVTFTARFAAVPEETARTGHEAEQ 629 >gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas palustris CGA009] Length = 610 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 103/433 (23%), Positives = 183/433 (42%), Gaps = 19/433 (4%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 + L + + + + +W T +++ ++ R Sbjct: 163 AASSATLAAFGITSAALYASGLAYGAVWLARTNGALLNVEEERYRLLARNMSDVISRHNR 222 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + + P + + A + + A+ + Sbjct: 223 N-------------GAVRFISPAAENLLGTPVARLAEHGLFDRVHVADRPAYLKAMSDAA 269 Query: 168 FPVVVALS---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN--VKILSCQAEKD 222 + ++ A + +L + + Sbjct: 270 RGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTAASNAGETEVVAVM 329 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E ++ + D+ R A+ + AKSRFLA+MSHELRTPLNAI+GFS++I + + L Sbjct: 330 RDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLML 389 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E KEY I+ SGQHLL+++N ILD+S++E+G +E+ + + C +L L+ Sbjct: 390 GPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALK 449 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A++ I++ + +L V D + +Q++LNL+SNA+KFT GG V V+ G Sbjct: 450 ARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTRLV 508 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIAE ++ + F Q + +G GLGL I +S++ HGG+ ++S++ Sbjct: 509 LRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQI 568 Query: 463 REGVEVIAILPNT 475 G V LP Sbjct: 569 DCGTTVTVSLPLA 581 >gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 11/270 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + +E + + +++AE + +K+ FL +MSHE+RTPLN I+G +++ + Sbjct: 647 LEDFSERKRDQDALRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHSTGL-- 704 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + EY G +S + L+NL+ +ILDLSR+EAG+ + L++ R+ + +L Sbjct: 705 --SREQAEYSGAALQSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFKL 762 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 + + + + ++ ++ V D ++QV+ NLL NA KFTA G + + Sbjct: 763 TSAQSGVTLICELGENVPRRVIGDAIRLQQVLTNLLGNAFKFTAT-GSIVMAAHRLPDGP 821 Query: 400 ----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S+ D G GI + ++ T+ +F Q S QG GLGL I ++++ GG Sbjct: 822 SKGYRILFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMGGT 881 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 I S+ G + LP + P + Sbjct: 882 MSIESEEGAGTTLYVALPFGAGDDEAPTAD 911 >gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 992 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 15/341 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 A S+ A + L ++F A + L + G+L L + Sbjct: 154 TAASMLADEPYFLSLMDTITFRFDAEASQRIRFLQRLELVVLGCGLLVLFLEYLLVFRPT 213 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTP 263 + + + + + + + L + DE+ + AE + AKS FLA MSHE+RTP Sbjct: 214 VGRMTGMLTALRRQGEQLREANAKLRDSLDESIRLAELAKAADKAKSEFLARMSHEIRTP 273 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNA++G S ++ + P ++Y+ I S LL +IN+ILD S+IEAG + Sbjct: 274 LNAVIGMSHLLLKTRLTP----KQEDYLAKIRSSADTLLRVINDILDFSKIEAGGLTIER 329 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 L ++ + + ++ L A EK +E ++ + + D + QV+LNL+ NAVKF Sbjct: 330 IPFDLETVLGDVVNIMSLGAAEKQLEFLLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKF 389 Query: 383 TAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G V + V Q +++D G G+ + + F Q +I G Sbjct: 390 T-ESGEVLLEVRRQPSTSQNARLRFAVRDTGVGLTAEQQEGLFRPFSQADESISRRYGGT 448 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRV 477 GLGL I+Q ++A GG +RS EG E LP + V Sbjct: 449 GLGLSISQRLVALMGGDLEVRSVPGEGSEFFFSLDLPLSEV 489 >gi|326791209|ref|YP_004309030.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] gi|326541973|gb|ADZ83832.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] Length = 475 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 142/334 (42%), Gaps = 14/334 (4%) Query: 152 SALSNFMLPYAVFLSFFPVVVA------LSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + + +L ++ F P+ LS + +L + + ++ L Sbjct: 146 TVVGAVVLVTSIKDVFLPIQDMKNQIYLLSLVIALIAGLLSFATSSVITKPLKTLMKFVQ 205 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + KD++ ++D+ + ++ F++++SHEL+TPL+ Sbjct: 206 KITNGQLDQKVNVIGKDEIAELGNAFNHMTDQ----LQRVEQSRQEFVSNVSHELKTPLS 261 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I +E + + E YKE+ DI+ L N+I+++L L R++ L+ + Sbjct: 262 SIKVLTESLM--FQEDVPVEMYKEFFEDINSEVDRLNNIISDLLTLVRLDQREIPLNIAN 319 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + ++ + + L A++K I++ + + + DE + NL+ NA+K+T Sbjct: 320 VDINEMTQNILKRLTPLAKKKEIKLIYESHKDIIA-EIDEVKFTLALTNLIENAIKYTPS 378 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V V V + + +IS++D G GIA+ E + F + G GLGL I Sbjct: 379 GGEVGV-VIQSDLQDAFISVQDTGIGIAKEEQSRIFERFYRTDKTRNRETGGTGLGLAIT 437 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + H G + S+ +G P V Sbjct: 438 YKTVIMHNGSIQVESEEGKGSVFSVQFPLRHVWE 471 >gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 580 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 290 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 349 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N KEY + + LL L Sbjct: 350 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 406 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 407 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 465 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 466 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 525 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 526 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 574 >gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] Length = 628 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 10/251 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + K + ++RAEE + KS FLA+MSHE+RTPLNAI+GFS ++ T + Sbjct: 387 HSQRHKKELIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETT----DTPE 442 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 EYI I + LL LIN+ILDLSRIEAG + + + + +R+ + R Sbjct: 443 NHEYIRIIEDNNYLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPA- 501 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 N++ + + ++ + QV+ N SNA+K+T G + + ++ Sbjct: 502 NVKCVTEFSMKKCYIHTEKNRLMQVLGNYFSNAIKYTNQ-GSITIGYYPPKNEKIRFYVR 560 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+ + T+ F + +QG GLGL I Q I I S++ +G Sbjct: 561 DTGCGISPDKQQTIFQRFVKLDN----FKQGTGLGLSICQMIAEKMNATVGIHSEVNKGS 616 Query: 467 EVIAILPNTRV 477 E P V Sbjct: 617 EFWIEFPYQPV 627 >gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing protein [Aromatoleum aromaticum EbN1] gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and histidine kinase domain of putative two-component sensor [Aromatoleum aromaticum EbN1] Length = 918 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 161/468 (34%), Gaps = 38/468 (8%) Query: 41 HVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN--SDI 98 + R + L V T + W + + Sbjct: 443 YWRGGTREGALAGLLAGFVVWAYTLMLPSVAKSGWLDPAFLEHGLFGIALLRPEQLFGLR 502 Query: 99 KIGEVYVWRIWLLVGQIAIGLCWTLL------------------------TLVEPGTWTP 134 + + W L IA L +LL + Sbjct: 503 GLDNISHALFWSLTVNIACYLFVSLLRTPTGQEASQATLFVDVFRRGRTSPAMFWRGSAQ 562 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FPVVVALSTQAIMSMHVLDI 187 + A L V A + A Sbjct: 563 VRDLLPLVARFLGTARAERAFTDYARQRGLAGIDQIQPDAGLVQFAETQLAGAIGSASAR 622 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 + + + ++ + E ++ LE A + +R +E + Sbjct: 623 VMVASVVQEEPLGLDEVMDILDEASQVRAYSHELEEKSRALESATAELRAANERLKELDR 682 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K F++S+SHELRTPL +I FSE++ + L ++G I + L L+N+ Sbjct: 683 LKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIAL--PDRMRFLGIIVSETERLTRLVNQ 740 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LDL++IE+G E S I + +V + + +++ + + + AD Sbjct: 741 VLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRGATVELVLPDEAPHLKADHDR 800 Query: 368 MRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + QV+LNLLSNA KF G GR+ V + +G+ + + DNGPGI + F Q Sbjct: 801 LVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQ-VRVEVSDNGPGIPPELHGVIFEKFRQ 859 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G QG GLGLPI++ I+ + GG+ + S G +LP Sbjct: 860 GGDERSRP-QGTGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVLPL 906 >gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 599 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + F++S+SHELRTPL +I G++E + + + E ++ I + + Sbjct: 357 RLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLEGALD--DREDAMNFLRIILQESEQ 414 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LIN++LDLS+IE+GR E + +S+ D+V + + + + ++K+I++ +I L Sbjct: 415 LTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPP 474 Query: 361 VWADEKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V+AD+ + V+ NLL NA+K+ GR+ + + + + + ++DNG GI + ++ Sbjct: 475 VFADKDYLEIVVRNLLDNAIKYVADDSGRIRI-IAFPANDMVRLEVEDNGAGIPQKDLGR 533 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A G GLGL I + I+ +H G +RS+ G +P Sbjct: 534 IFERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIPVASPQQ 593 Query: 480 F 480 Sbjct: 594 Q 594 >gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 1810 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 106/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1171 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGQVLGVIELA 1230 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1231 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1290 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1291 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1350 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1351 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1409 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1410 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1469 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ G S+ D G GIA ++ Sbjct: 1470 AVKFTDSGAVELVIRPAGADVPNAIREHLLEAGSLRDADGDLIAFSVTDTGIGIASSKML 1529 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1530 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1585 >gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 566 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +++F+A++SHEL+TPL +I GF+E + + + ++++ I+ L Sbjct: 342 RLENMRTQFVANVSHELKTPLTSIKGFAETLR----YVDDFKNKEKFLNIINDEADRLTR 397 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ L LS IE+ E E I + I+++ +++ A++KNI++ D + ++ Sbjct: 398 LINDTLTLSHIES-SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDK-VPNLKG 455 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D +Q+++NL+ NA+K++ G V + + I ++D G GI++ I + Sbjct: 456 DNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLENDNCI-IWVEDKGVGISKEHIDRIFER 514 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A A+ G GLGL I + I+ G + S++ +G + I +P Sbjct: 515 FYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 564 >gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] Length = 561 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +++F+A++SHEL+TPL +I GF+E + + + ++++ I+ L Sbjct: 337 RLENMRTQFVANVSHELKTPLTSIKGFAETLR----YVDDFKNKEKFLNIINDEADRLTR 392 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ L LS IE+ E E I + I+++ +++ A++KNI++ D + ++ Sbjct: 393 LINDTLTLSHIES-SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDK-VPNLKG 450 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D +Q+++NL+ NA+K++ G V + + I ++D G GI++ I + Sbjct: 451 DNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLENDNCI-IWVEDKGVGISKEHIDRIFER 509 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A A+ G GLGL I + I+ G + S++ +G + I +P Sbjct: 510 FYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 559 >gi|256828313|ref|YP_003157041.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577489|gb|ACU88625.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 940 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 108/477 (22%), Positives = 195/477 (40%), Gaps = 30/477 (6%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75 + TG + P DR I V+ L + F +++ ++ + W Sbjct: 182 LRVTGIRALVLSPHITTIDRAIWINDVKVLGTGLLVGFFFTMVLIHLAIYLYTGNGKFKW 241 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 ++ +A ++L I+ ++ G +A G ++ + Sbjct: 242 LVLGNLAFAGFVALTSYQHLFSIRNMPAA----IMMAGLMAQGFLACVIREFLELKKYNK 297 Query: 136 YL--TIYKSATLLIALSISAL-------SNFMLPYAVFLSFFPVVVALST----QAIMSM 182 + + L+ A++ A NF L AV +S +++ + + S+ Sbjct: 298 RINAIMLFFIYLVFAVAAGAFYLPQELQGNFSLNVAVPVSLIGAWACIASMKRDRVVSSI 357 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 ++ + A + + + + + ++ E + L R+ A Sbjct: 358 FLIAWAGAVVSISVYNRAAHGAFSFAHPSIIWAGFVCEGVAMSILLAYTVQTMAVQRQSA 417 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E AKS FLASMSHE+RTP+ AILGF + ++ ++Y+ I S QHL+ Sbjct: 418 EAMAQAKSTFLASMSHEIRTPMTAILGFLNL----SLQMRPEGQLRQYLLKIRTSAQHLM 473 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSV 361 +IN+ILDL++IEA + EL + ++R+ +L RA E E+ + P L + Sbjct: 474 GIINDILDLAKIEADKMELDADPFEVEAVLRDTADILVARAFENGNELVVSVQPGLQHRL 533 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIKDNGPGIAE 414 D ++Q+++NL NA+KFT G V + V + D G GI Sbjct: 534 VGDSLRLKQILVNLGGNAIKFT-RNGTVRLAVLRAEDGPSSEDAVTLRFQVSDTGIGIDA 592 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +P + SF Q + G GLGL I++ ++ GG+ +RS+L +G Sbjct: 593 AVLPRLFESFVQADTSTARVYGGTGLGLNISRRLVHLMGGEIAVRSQLGQGSTFQFT 649 >gi|156977380|ref|YP_001448286.1| sensor protein LuxQ [Vibrio harveyi ATCC BAA-1116] gi|156528974|gb|ABU74059.1| hypothetical protein VIBHAR_06167 [Vibrio harveyi ATCC BAA-1116] Length = 594 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 9/288 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + + + + +L+ E ++AE AKS+FLA+MSHELRTP+N Sbjct: 228 LLSIILLVTAFVLQTQHRVNKLKHLNDELIEATEKAERAAKAKSQFLATMSHELRTPMNG 287 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG S++I ET +T KE++ I S QHL+ ++N+ILD S++E R +L + Sbjct: 288 VLGISQIIANET----QEKTTKEHVKIILDSVQHLMTILNDILDFSKVEENRLDLEAAPF 343 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +L+ ++ +Q +EKNI+++ + + P D +RQ++ NL NAVKFT Sbjct: 344 NLLQVLTPVCSAIQPLVEEKNIQLYVENEVPDTIEFKGDCARVRQILFNLAGNAVKFTGD 403 Query: 386 GGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V + + IS+ D G GI + + SF Q + G GLGL I Sbjct: 404 -GHVLIRAELDEQKRCLLISVNDTGIGIPGDKQGCIFNSFEQADTSTTRKFGGTGLGLAI 462 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + + G+ ++S G + + LP + +P ++T K Sbjct: 463 VKKLTELMSGEIKLKSVESIGTQFVVELPIPWIEKELP--ATQNTPVK 508 >gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1195 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 10/260 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL++ + ++ K AE N AKS FLA+MSHE+RTP+NAILG + ++ + + Sbjct: 563 ITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLTRLVLETEL----D 618 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++++ ++ + Q L+ ++N+ILD S+IEAGR E+ + IS+ ++VR + + + + + Sbjct: 619 PRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNTMGLFRAKIE 678 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 EK + ++ SL +V D + QV+ NL+ NAVKFT G + + V Sbjct: 679 EKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFT-ESGEIRIMVEQIQEDCRTV 737 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G G+ + E + +F Q I G GLGL I Q ++ GG + Sbjct: 738 TLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLTICQRLVGLMGGSISVS 797 Query: 460 SKLREGVEVIAILPNTRVLN 479 S G ++ +V Sbjct: 798 SLKGVGSTFSFVIQMGKVPP 817 >gi|163797321|ref|ZP_02191274.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177412|gb|EDP61968.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 1047 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + L + + Y+ L ++ +I E+ L+ + A+ ++ Sbjct: 593 LAWNWQPIAILMIGALLSGALSLYLL-SLTRTEERITRLVMERSQLL---QQARLDAEAA 648 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++A++ N AKS+FLA MSHELR+PLNAILG++++ L+ + + +I I SG Sbjct: 649 MEQAQQANQAKSKFLAHMSHELRSPLNAILGYAQLALLDPESHGISNRAQGFIKTIIDSG 708 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 HL+ ++ +ILDLS+IE+G L L + + + ++ A++ + +D L Sbjct: 709 NHLVGVVGDILDLSKIESGYLRLENVPFDLRVLANDAVAIMAASAEKNGNSLRFDLDADL 768 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIA 413 S+ D +RQVILN LSNAVKFT G + + + + +S+KD+G GI Sbjct: 769 PDSLIGDPVRVRQVILNFLSNAVKFT-TNGSIQLEIRRFTETVGTIRVRVSVKDDGVGIP 827 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472 + + +F Q ++ G GLGL I + ++A GG+ ++SK G + Sbjct: 828 IAKQADLFQAFTQADMSTTRKYGGTGLGLAINKQLVAAMGGEVGVQSKEGAGSTFWFDIA 887 Query: 473 ---PNTRVLNFIPEDNHEST 489 + V P + ST Sbjct: 888 FDKAVSEVAEIAPASDDRST 907 >gi|88812626|ref|ZP_01127873.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Nitrococcus mobilis Nb-231] gi|88790042|gb|EAR21162.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Nitrococcus mobilis Nb-231] Length = 869 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 97/470 (20%), Positives = 183/470 (38%), Gaps = 32/470 (6%) Query: 31 MDFDREIITLHVESLFRVSPI--LPLFVLLVANIGT-WFTQNPIFPMWSLI-TLAVYAAN 86 ++ + R S I + VL+ A + F F + L+ L A Sbjct: 5 PAVEQAWAEKDRSARLRFSRIGCVLALVLIPAGVTLDLFIYPQFFGKFLLLRALGDVAVL 64 Query: 87 LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 + LG + + + I ++ L E T + Sbjct: 65 VILGLHFSKNGRDNIRILT----MAWLIIPQATICYMIYLTEGYASTYYAGLNLAILGMG 120 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 + L ++ +L A + ++ + + I S+ + + + +S Sbjct: 121 VLLPVTVWEVAILVSASLALYLVACLSRTEEPINSVLLYNNLYFLVSTGVISATAVYFNR 180 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + L+ + + ++ AE + KS F A++SHELRTPL Sbjct: 181 LRRFTEFRLNFELDARH---------------KELAE-LDRLKSEFFANVSHELRTPLTL 224 Query: 267 ILGFSE-VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 IL E +++ P + + I+ + LL L+N++L++ R+E +L Sbjct: 225 ILAPVEDLLQKRAAIPAAIASQ---LDIIYGNAHRLLRLVNDLLEVIRLEESGVKLDRRP 281 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L +++ + ++ A+ + I Q++ + D + +V NLLSNA KFT Sbjct: 282 LDLTALLKSIVTAVEPLAKSRGITFKQRLPDDPVPIRGDRSALEKVFFNLLSNAFKFTNA 341 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG V +T + ++++D G GI+E ++P V F Q + G GLGL + Sbjct: 342 GGGVRITAEVEPDQ-VQVTVQDTGIGISESDLPFVFDRFRQADSSATRKYVGTGLGLALV 400 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + + H G I+S+L G + LP R + + E T + +A Sbjct: 401 KELTEKHDGSAKIQSRLGAGTAITVSLPLARAAGEL---DAEPTDKEIFA 447 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 20/294 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 ++L +S Q ++L L+ ++ E+ N A R A + HE+ PL Sbjct: 590 HNLLRSAKLEQDLQLRNEELQTTLDELTQTQNQLLHS-EKIN-ALGRLSAGLLHEVNNPL 647 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N L EV++ + +E E IGDI Q + +++E+ + G + Sbjct: 648 NYALTALEVVKNDR-TITGDEELSEIIGDIDEGMQRIRGIVSELRAFAYPSKG----EQQ 702 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 V+ + ML ++ + V + QV++NL+ NA+K Sbjct: 703 TFDAAKAVQGAVQMLVHERRDVAVYNEVD---ESCCVKGSRNHIVQVLVNLIGNAIKAVQ 759 Query: 385 -----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G + + +S++DNG GI + V F + +G+G Sbjct: 760 AVAEQRAGEIRIRAE-EDNGRIRVSVRDNGTGIPADTLNRVFDPFY----TTRDVGEGMG 814 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +GL + Q+I+ NHGG+ +RS+ E LP L H + + Sbjct: 815 MGLSVCQTIVRNHGGELCVRSEEGAWTEFTFDLPAADELTQTQSKAHRDVRERT 868 >gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 683 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++ A + AKS FLA MSHE+RTP+N I+G + + + + +K+Y+ I S Sbjct: 301 EKQAAVIASQAKSEFLAHMSHEIRTPMNGIIGLTHL----ALQSDPSPEHKDYLHKIRSS 356 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL +IN+ILDLS+IEA + L ++ +++ ++ +K +E ++ Sbjct: 357 ATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLDQKGLEYICEVADD 416 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIA 413 + +W D ++QV+LNLLSNAVKFT+ G V + + + Q + + D G GI+ Sbjct: 417 VPLKLWGDGLRLKQVLLNLLSNAVKFTSK-GSVRLRIRRENSDSQDLLHFMVTDTGMGIS 475 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + Q + +I G GLGL I + I G S+ G +P Sbjct: 476 REYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCESEPGNGSTFHLSIP 535 >gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes HOxBLS] gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes HOxBLS] Length = 577 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 9/254 (3%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + KS FL+ MSHE+RTP+N I+G +++ + + I S + Sbjct: 189 AAENASREKSEFLSRMSHEIRTPMNGIIGMTKMARMSVDDKN---KLLNSLDKIDFSSRF 245 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLS 359 LL LIN+ILD++RIE+G+ EL L+ +V IM + +A + + D S+ Sbjct: 246 LLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAVDNQVTFRVNTHDLSVP 305 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGRGQY--ISIKDNGPGIAEG 415 V DE + Q+I+NL+SNA+KFT GG+V + TSG I D G G++E Sbjct: 306 GVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAVRLEFRISDTGIGMSEE 365 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + F Q S + G GLGL I +++ G + SK G + IL Sbjct: 366 FMQRMFEPFEQASES-AMQYGGTGLGLAICHNLVHMMNGTINVTSKPGNGSQFTVILTLE 424 Query: 476 RVLNFIPEDNHEST 489 + P +E+ Sbjct: 425 HSADGTPSLPNENP 438 >gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 596 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 4/236 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R + F++S+SHELRTPL +I G++E + + + E ++ I + + Sbjct: 356 RLRNLERTRRDFVSSVSHELRTPLASIKGYTETLLEGAV--NDPEHATAFLRIIQQESEQ 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LIN++LDLSRIE+G+ + + + + + + + + A K + I + L Sbjct: 414 LTALINDVLDLSRIESGKIIYNFEPVDVKPALEKTMALFEPAASRKGVRIELNVPDGLPP 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V AD V+ NL+ NAVK+ GRV V+ + + I + DNG GI + ++ Sbjct: 474 VLADRNYFDIVMRNLIDNAVKYVDANRGRVRVSAC-KADQNVAIEVSDNGIGIPQADLKR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A G GLGL I + I+ H G +RSK G P Sbjct: 533 IFERFYRVDKARSRELAGTGLGLSIVKHILLAHKGNVEVRSKTNSGSTFTVTFPIA 588 >gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 880 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 18/277 (6%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L + E RA+ + KS+FLAS+SHELRTPLNAI+GFS V+ E + PL Sbjct: 607 LEDLVAQRTGELREALDRAQAADRLKSQFLASISHELRTPLNAIIGFSTVLLDE-LSPLL 665 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E +E + I+++G++LL+LIN+ILD++RIEAG++ L A +++ +V+ + ++ Sbjct: 666 VEEQREDLETINKNGRYLLDLINDILDMARIEAGKFALHREATAVLPVVQSAVDIMHGLN 725 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------- 396 + + + I P L + D +RQ+++NL+SNAVKFT G++ V Sbjct: 726 SKP-VTMRIDIAPDLPRMDVDPTRLRQIVINLISNAVKFTDR-GQIVVRAIRRVVQEATP 783 Query: 397 -------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 G IS++D G G+ + + F Q A G GLGL I + ++ Sbjct: 784 IGSHYLLPGDWIVISVQDTGIGMDAEALGKLFQEFQQVH-AGARGILGSGLGLSITRRLV 842 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 H G + SK+ G + + I + + Sbjct: 843 DLHDGDLWVDSKVGVGSTFSFAIATASIPAPIEQQSP 879 >gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 357 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 15/318 (4%) Query: 158 MLPYAVFLSF-FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 L AV + + + + D+S +L+ A+ I F VK Sbjct: 49 SLTSAVIYFLGWKAFIYMHWRFANKHKKFDLSHFPILSGAVEAMNKIASGDFNVLVKTNE 108 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + +AK L + R F++ +SHE+++PL +I GF+ +++ Sbjct: 109 LDPFNEVADNVNRMAKELGSLEKLR--------QDFISDVSHEIQSPLTSISGFATLLKK 160 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G L+ + Y I + L L +L LS +E+ L+ + + + Sbjct: 161 ---GSLDKDQISHYASIIETESKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVL 217 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +ML+ + KNI + ++ ++ + DE + QV +NLL+NA+KFT G + V + + Sbjct: 218 LMLEPQWSAKNITLDISLEETI--ICGDEDLLSQVFINLLNNAIKFTPENGNIGVNL-YN 274 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + G + D G GI+ + P + F + A + G GLGL I + I+ HGG+ Sbjct: 275 NEDGVECKVSDTGIGISSEDQPRIFERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKI 334 Query: 457 LIRSKLREGVEVIAILPN 474 + S++ +G E I LP Sbjct: 335 SLTSEIGKGTEFIIWLPK 352 >gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10] Length = 618 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMIND 433 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + +K I +++ Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 493 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 552 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612 >gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] Length = 512 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 153/318 (48%), Gaps = 18/318 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ----AEKDDLIAELEV 230 + S+ + + + G++ +A + T + + + L+ + + ++ Sbjct: 190 VIGFVSSIVITMLLVVGLIRSANASLTRLKTGVRRFGEGDLTHRINETRDAGEIRDLART 249 Query: 231 AKSLSDETRKRAEE----------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +S + ++ EE N AKS FLA++SHELRTPLNAI+G+SE+++ E Sbjct: 250 FNDMSAKLQRAIEEVHDAKADADAANAAKSMFLANVSHELRTPLNAIIGYSEMLQDELSD 309 Query: 281 --PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L+ + + +G I SG+ LL+LIN+ILDLS++E G+ +S + ++ + Sbjct: 310 GQQLDQDQFHHDLGTIIFSGRQLLSLINDILDLSKMETGKMTVSLETVDPAALIYQICDA 369 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 L +KN + I L + +D ++Q++ NL SNA KFT G + V + Sbjct: 370 LSPLITQKNNTLTLSIADDLPEMESDPAKLQQIVTNLFSNACKFT-EDGVIEV-IARIEK 427 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++KDNG GIAE + V +F Q + S G GLGL I + GG + Sbjct: 428 NSLLIAVKDNGIGIAEAQQANVFEAFEQAESSTGSKYGGTGLGLAIVREFCRMLGGDITL 487 Query: 459 RSKLREGVEVIAILPNTR 476 S +G A LP + Sbjct: 488 ESTPGKGSTFTATLPLDQ 505 >gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 2099 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 166/392 (42%), Gaps = 24/392 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +LV + + + + L ++ + + ++++ F FL Sbjct: 1277 ARRILVTDLPDNVVPISSGVFTTLPRSAIVLPVHFEGQVKAVIELASVGEFTELQLSFLD 1336 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + +I + + L A + L ++N ++ + ++ Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395 Query: 227 ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+E ++ R+ EE + KS FLA+MSHELRTPLN+IL + + Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ + E+ IH +G LLNLI++ILDLS+IE+G + I + +++ Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEMMARPF 1514 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A+ +++ + ++ + D K ++Q++ NLLSNA KFTA GG V + V + Sbjct: 1515 RHEAENRDLSFSVDVGADVAKSLITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573 Query: 399 RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GI + + +F Q + G GLGL I+ Sbjct: 1574 GWSSDHPSLKHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + + GG+ +RS G + LP T V Sbjct: 1634 RELANLLGGEIQLRSTPGIGSTFVLYLPLTYV 1665 >gi|167646752|ref|YP_001684415.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349182|gb|ABZ71917.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 592 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 106/456 (23%), Positives = 184/456 (40%), Gaps = 27/456 (5%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 R + L+ A T + + W + A N LG + Sbjct: 16 HRRRDVKTILPMSLMAAVGTTVWLDWRLTFAWLAVVCAFIVVNQGLGYWIDR-TAAPRAS 74 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 W + LL LV A +L A+++S+ + F + + Sbjct: 75 QEW--LYAGVTFFYTSAYALLPLVLITDG--RRAPAVAGAAMLGAVALSSTAEFPISRRI 130 Query: 164 FLSFFPVVVALSTQAIMSMHVLD---ISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 + V+ + A+ V + ++ +A + L ++ + QA Sbjct: 131 GAASLLAVLLTALLALARPTVGETSGQTMVAFVAAVAFLGYVLVAALHRATAERQLVQAL 190 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 E E + + AK+ FLA+MSHE+RTPLN +LG +V++ + + Sbjct: 191 AVAREKEAEAEAANA------------AKTTFLATMSHEIRTPLNGVLGMLQVMQADGLS 238 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L +E + + +SG+ L ++N++LDLS+IEAGR E+ A L ++ C + Sbjct: 239 DL----QRERLEIVRKSGEGLTAILNDVLDLSKIEAGRLEIQTVAFDLPGLLVGCHHAVS 294 Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A EK + + ++ D +RQVI NLLSNAVKFT G + ++ +G Sbjct: 295 VLAAEKGLSCTLTVASEARGLYHGDPLRLRQVIGNLLSNAVKFTNS-GTIDLSA-RLNGD 352 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I++ D G G+A ++ + F Q + G GLGL I + + GG + Sbjct: 353 ALEIAVSDTGVGVAPEDLGRLFGKFSQLDASSTRRHGGTGLGLAICRDLCGLMGGGISVT 412 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 S + +G LP R+ + S + + A Sbjct: 413 STVGQGSTFTVRLPAARLSPLREAEAETSAKSQTPA 448 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 5/240 (2%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 R+ AE N K FLA +SHELRTPLN ILG+ +++ + + E + I Sbjct: 332 QAAREAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQL---SEEKKAIALETIE 388 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+ + LI ++LD+SRI G+ L+ S++ L + + L A+ K+I+I +I Sbjct: 389 RNAKLQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIA 448 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 P + D ++QV+ NLL+NAVKFT GG V + + T I + D G GI Sbjct: 449 PDVQLFMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLEST-NTYTQIQVSDTGKGITPE 507 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 +P V +F Q A G+GLGL I + I+ HGG SK +G LP Sbjct: 508 FLPYVFETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPL 567 >gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1033 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 133/246 (54%), Gaps = 14/246 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 +LAK+ FLA+MSHE+RTPLN +LG +++++ + PL ++Y+ SG+ LL ++ Sbjct: 660 SLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL----QRDYLDTALNSGRSLLQVL 715 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDLS++E+G+ EL L +++ + + + A+E+ + + +ID +L AD Sbjct: 716 NDILDLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFVAD 775 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIP 418 + +RQ++ NL+ NAVKFT G + V + D G GI ++ Sbjct: 776 KGRLRQILFNLVGNAVKFT-ESGSIEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDKVS 834 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 TV F Q + QG GLGL I + ++A GG + ++ +G + + TR++ Sbjct: 835 TVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTI-RTRII 893 Query: 479 NFIPED 484 P+D Sbjct: 894 ES-PDD 898 >gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O] gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O] Length = 970 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 26/382 (6%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-------YAVFLSFFPVVVAL 174 + L LT+ A L++A+ I ++ A L + + Sbjct: 325 AVSELTRTLNLAQLILTVISLAGLIVAIVIVWRVVYVSVVTRLTEYSAALLQVAQGNLDI 384 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKS 233 Q + + + A + A + I K L E ++L+ E Sbjct: 385 ELQVRGNDELAHMGQAIITARNTAQALKIVAEGEAKAKKELQEHKEHLEELVTERTRQLQ 444 Query: 234 LSDE-----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L++E R AE+ N AKS FLA+MSHE+RTP+N +LG + ++ + PL Sbjct: 445 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 504 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 K Y I+RSG++LL ++N++LD S+IEAG E+ ESA L +V + ++Q R Sbjct: 505 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 560 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A EK++ I+ ++ W D + QV+ NL+ NA+KFT G ++V++ Sbjct: 561 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 620 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA+ E T+ +F Q S K A G GLGL I++ I+ GGQ + S Sbjct: 621 VQFEVTDTGIGIAQQEQATLFDAFTQASGGQK-AAGGTGLGLAISRRIIQAMGGQMEMAS 679 Query: 461 KLREGVEVIAILPNTRVLNFIP 482 + EG +P T P Sbjct: 680 EEGEGSRFWFTVPLTPCDAVEP 701 >gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 676 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 9/253 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A D +RAE ++AKSRFLA++SHE+RTPLN ILG +++ +G N + Sbjct: 155 EAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADL----VLGTELNPEQRT 210 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ + SGQ LL LI+ +LD SRIEAGR +L+ L + + +L RAQ+K IE Sbjct: 211 YVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIE 270 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISI 405 I + + V D +RQ+++NL NA+KFT GG V V++G+ G +++ Sbjct: 271 IALDVAEDFPAAVLGDADRVRQILINLAGNAIKFTERGG-VGVSLGFARAGTGGEVVLAV 329 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D GPGI E +P + F QG + + +G GLGL I + ++ GG+ S+L G Sbjct: 330 ADTGPGIPEERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEADSRLGRG 389 Query: 466 VEVIAILPNTRVL 478 +LP V Sbjct: 390 STFRVLLPLAEVA 402 >gi|111225753|ref|YP_716547.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153285|emb|CAJ65037.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1371 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 17/349 (4%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L + +++ + F + + + + IM+ + LA + Sbjct: 721 VLGVIELASFTPFSELHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 779 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++N ++ A +D E+E+A+ +E ++ + K+ FLA+MSHELRTPL Sbjct: 780 VELQRTNNELEEKAALLEDKNHEIELARIGLEEKAEQLALSSQYKTEFLANMSHELRTPL 839 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++L ++++ L+ ++ IH +G LL LIN+ILDLS++EAG+ ++ + Sbjct: 840 NSLLILAKLLADNPDRNLSR-KQIDFAETIHSAGSELLGLINDILDLSKVEAGKMDVDAT 898 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 ++ + + A EK + + + DE+ ++QV+ NLLSN+VKFT Sbjct: 899 SVRTAALCDAVAGVFGPVADEKGLAFEVNLAADVPAEFITDEQRLQQVLKNLLSNSVKFT 958 Query: 384 AIGGRVHVTVG-------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 G V + V ++G ++ D G GIA ++ + +F Q Sbjct: 959 DS-GTVRLDVTLARPDLPHLASHLRSAGTVLSFAVSDTGIGIAAEKLRMIFEAFQQADGT 1017 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ I GG + S + G LP + Sbjct: 1018 TSRRYGGTGLGLSISKEIARLLGGSIAVSSAVGHGSTFTLYLPAVPLAQ 1066 >gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 501 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ ++A+ + KS FLA+MSHE+RTPLNAI+GFS ++ E L E +EY Sbjct: 263 EDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSD-LRPEDIEEYA 321 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I ++GQ L+ LI++ILDLS+IE+ E + S SL + + M +L + +E+ Sbjct: 322 ALIEKNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVK-PGVELI 380 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + S+ AD + QV+ NL++NA+KFT+ G + + + + ++D G G Sbjct: 381 ADLPAEDVSITADPVRLEQVVNNLINNAIKFTSR-GSIRIGYRRRGEKDVELFVEDTGKG 439 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++E I V F +G S QG GLGL I ++I+ + GG+ S++ EG Sbjct: 440 MSEEVIAHVFERFYKGD----SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVC 495 Query: 472 LPNTR 476 LP R Sbjct: 496 LPIGR 500 >gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 564 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 9/228 (3%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 L +++F+A++SHEL+TPL +I GF+E + +NET ++++ I + + L L Sbjct: 343 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 398 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN+IL LS IE+ ++ I+ + I M++ A K+I + D + + D Sbjct: 399 INDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGD 456 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q+ LNL+ NA+K++ G +V V V ++ Y+ I DNG GI + ++P V F Sbjct: 457 KDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPKEDLPRVFERF 515 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + + G GLGL I + I+ G ++S L EG + Sbjct: 516 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 561 >gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 555 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 9/228 (3%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 L +++F+A++SHEL+TPL +I GF+E + +NET ++++ I + + L L Sbjct: 334 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 389 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN+IL LS IE+ ++ I+ + I M++ A K+I + D + + D Sbjct: 390 INDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGD 447 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q+ LNL+ NA+K++ G +V V V ++ Y+ I DNG GI + ++P V F Sbjct: 448 KDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPKEDLPRVFERF 506 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + + G GLGL I + I+ G ++S L EG + Sbjct: 507 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 552 >gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 1819 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1172 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1231 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1232 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1291 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1292 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1351 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1352 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1410 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1411 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1470 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA ++ Sbjct: 1471 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1530 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +F Q G GLGL I++ I GG+ S+ G LP R Sbjct: 1531 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1589 >gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1377 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I ++ + AE AKS FLA+MSHE+RTP+NAILG + ++ + + P Sbjct: 734 RDIRPQREMEAELAHRAELAESAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRDLIDPA 793 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N + I + +HLL +IN+ILDLS+IEAG+ +LS+ S + +V + ++ Sbjct: 794 N----INRLDKIESAARHLLAVINDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDE 849 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--- 399 A+ K + + +DP L + D +RQ +LN SNAVKFT G V + V Sbjct: 850 ARAKGLSLKVDLDPELPWMRGDVTRLRQALLNYASNAVKFTHT-GFVTIRVRLQERDAEG 908 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++D G GI + + +F Q + G GLGL I + GG+ Sbjct: 909 LTVRFEVEDTGIGIPPDKQARLFQAFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGA 968 Query: 459 RSKLREGVEVIAI 471 S G Sbjct: 969 DSVAGRGSTFWFT 981 >gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T] gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T] Length = 596 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 149/323 (46%), Gaps = 9/323 (2%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 L+ +L ++ V + D +++G + + + L + Sbjct: 120 WLALHILEADRRMALVVHGVQRGLTLEQARTQADETMSGSMRVLVETVLVMYDKLANRTM 179 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + AEL+ A ++ AE + AKS FLASMSHE+RTPL AILG S Sbjct: 180 AMTREINRRRQAEAELQKAHEALKRAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSH 239 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ E + + +E + I +G+HLL++IN ILDLS+IEAG++ L E+A+ L +V Sbjct: 240 LMHQEEL----PASQRERLDVIENAGRHLLSIINGILDLSKIEAGKFTLDEAALDLRGVV 295 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + ML +A+ K + + + D + D +RQ ++N L NA+KFT GG + V Sbjct: 296 EEAMAMLAHQAEAKGLSLRAEFDLPPGTFLGDATRLRQALVNYLINALKFTERGG-ITVR 354 Query: 393 VGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 ++ ++D GPGIA E+ + F Q G GLGL I + Sbjct: 355 CSASAVDTDAVDVRFVVEDTGPGIAAAELRRLFKPFTQTEATSTGEHGGTGLGLAITARL 414 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 GGQ S+ G Sbjct: 415 AELMGGQAGAESEPGRGSRFWFT 437 >gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 530 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 9/253 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + AE N AKS FL+SMSHELR+PLNAILGF++++ + P + + I I R Sbjct: 139 QALAAAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATD--SPPPTPSQQASIDQILR 196 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 +G HLL LIN++LDL++I+AG+ +S ++SL D++REC M+ +A ++ I + Sbjct: 197 AGWHLLELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIVTQAGQRGIRMTFPQGE 256 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + V AD ++QV++NLLSNAVK+ G V VT +S+ D GPG++ + Sbjct: 257 APCHVRADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGRVRVSVSDTGPGLSPEQ 316 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F + E+G G+GL +A+ +M GG + S +G L Sbjct: 317 VGRLFQPFNRLGQ-EAGPEEGTGIGLVVAKRLMELMGGGIGVDSTPGKGSVFWIEL---- 371 Query: 477 VLNFIPEDNHEST 489 + P +T Sbjct: 372 --DSAPAPEMAAT 382 >gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 1035 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA G +V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + P TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFPPTRVL 1033 >gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4] gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 494 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ R +AE+ + KS FLA+MSHE+RTPLNAI+GFS ++ E ++ Sbjct: 249 IQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSE---EMDG 305 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE++ I+++ + LL LI++I+D+S+IE+ E SL I+ E Q Sbjct: 306 EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQ-CQSLNI 364 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 IE ++ + + D +QVI NL++NA+KFT G + + I Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMY-GHITLGSKILQNGTIDIY 423 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G G+ + ++ + F + S + G GLGL I ++I+ + G+ + S + Sbjct: 424 VKDTGMGMPQEKLAHIFERFYKMD----SFKPGAGLGLSICKTIIEHMQGEINVTSIEGK 479 Query: 465 GVEVIAILP 473 G +P Sbjct: 480 GSNFTITIP 488 >gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 91] Length = 927 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 499 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E RK+AEE + K FLA+MSHE+RTPLNAI+GFS+VI L+ Sbjct: 249 IQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST-YDELSE 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +++ I + +HL+ LI+++LDLS+IE+ + + + SL ++ + Q Sbjct: 308 EERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKE-QTMKP 366 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--VGWTSGRGQY 402 IEI + + D ++QVI N ++NA KFT G +H V + Sbjct: 367 ISEIEIRALLPNEDVYINTDATRLKQVISNFINNARKFTEK-GYIHFGYAVDSVDASSVH 425 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI + + F + + +QG GLGL I ++I+ + G + S++ Sbjct: 426 VFVEDTGSGIPKECQKEIFDRFYKVD----TFKQGTGLGLSICKTIVEHLQGDISVESEM 481 Query: 463 REGVEVIAILPNTR 476 +G I LP R Sbjct: 482 GKGSRFIVTLPFER 495 >gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 527 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 3/248 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AK+RFLA++SHELRTPLNAILGFS+V+ E G L N+ +EY+ IHRSG HLL+++ Sbjct: 243 NDAKTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVV 302 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N +LD+S+IEAGRYEL + D + C ML +A+EK + + ++ S+ + AD+ Sbjct: 303 NTMLDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQ 362 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + ++Q+++NL+ NAVKFT GG V V G +++ D G GIAE ++ + F Sbjct: 363 RAVQQILINLVGNAVKFTDKGGLVTVDAE-VDGAMLNLTVSDTGIGIAEDKLEKLGQPFV 421 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPE 483 Q +G GLGL + + ++ HGG IRS EG V+ +P + P Sbjct: 422 QIQNDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIPRDGAGICEPSPV 481 Query: 484 DNHESTQY 491 + ++ Sbjct: 482 STRAAVEF 489 >gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] Length = 592 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 165/379 (43%), Gaps = 20/379 (5%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G + + ++ + + + + + L L AV L + Sbjct: 101 GTFFGVFAVLNLFYYVYTFAQTFFILFMNNTKGVRYLIKSALFSAVPLIGILANTYIIPL 160 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + G L + L + + + K LS A L E Sbjct: 161 YGAYPFQPYCLVIGALLSYLFMVEHQQDQMEFEHRKRLS-------------KALELEKE 207 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + ++A+ K+ FLA+MSH++RTP+NAI+GFS++I P + E K I I S Sbjct: 208 STRKAKVAGEVKNAFLANMSHDIRTPMNAIIGFSDIIAEH---PDDEEIVKNAISKIQAS 264 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ LL +IN++LDLS+IE+G+ E+ E L + +ML+ Q+ I+ + Sbjct: 265 GEILLKIINDVLDLSKIESGKAEIVEMVTDLKQMEENLKMMLEYSIQKGMIDFKVEDQIE 324 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--GWTSGRGQY--ISIKDNGPGIA 413 VW D ++QV++N+L+NAVKFT GG + + + +IKD G G+ Sbjct: 325 NPLVWCDATKLQQVLVNVLNNAVKFTQAGGTITFSCVQRMIAPGFAEYKFTIKDTGIGMT 384 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E +F + + +S +G GLGL I + ++ G +I+S +G ++ LP Sbjct: 385 EEFQKHAFEAFERERTSTESKTEGTGLGLAIVKKLVDLMHGDVIIQSNSGQGTKIQISLP 444 Query: 474 NTRVLNFIPEDNHESTQYK 492 + ++ +YK Sbjct: 445 LRIATENQLHQSDKAKEYK 463 >gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1009 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 19/293 (6%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L ++ +L A+ + + A N AKS FLA+MSHELRTPLNAILGF++++ Sbjct: 495 LGVAVKQAELFAQTQKQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLL 554 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + ++EYI +++SGQHLL LIN++L++S+IEAGR + + ++ ++ Sbjct: 555 QRDR---TLAAKHQEYIKIVNQSGQHLLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQA 611 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 +MLQL+A+ K + + +++ S+ V DE +RQV++NL+SNA+KFT G + V+ Sbjct: 612 IQVMLQLKAESKGLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTREGEVTLKVS 671 Query: 393 VGWTSGR------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 VG I D+G GIA EI + +F Q +S QG GL Sbjct: 672 VGQVDEDLGLFEDNGVSNTYLRFEIIDSGCGIATEEINDLFQAFKQTQSGRESQ-QGTGL 730 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 GL I+Q + GG+ + S+L G +P V + + ++ + C Sbjct: 731 GLVISQRFVNLMGGEIQVSSELGHGSCFSFQIPVG-VADQMVNESENALNQAC 782 >gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 731 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 23/320 (7%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + A + ++ +LA AL Y + ++ L Sbjct: 275 LAGLAEADFRAPWYRELAITVAFWLVLAGALCLLLVQQYRSGRGQLRALRL--------- 325 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E +++A N +KS FLA++SHE+RTPLN +LGF+++ P Sbjct: 326 --------LQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQI---GYRDPSVVPE 374 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ I SG+ L ++N++LD+S+IEAG+ L + L + + +++ A++K Sbjct: 375 ARQKFARILESGKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLVRGFARDK 434 Query: 347 NIEIFQKIDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 I + +D + V D + Q++LNLLSNAVKFTA G+V VTVG SG I++ Sbjct: 435 GIALCLMVDRRVPEVIVVDPLRLGQILLNLLSNAVKFTAS-GQVDVTVG-VSGDKLVINV 492 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D+G G++E +I + +F Q + G GLGL I + ++ G ++ S L G Sbjct: 493 RDSGLGMSEEQISRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVTSHLGAG 552 Query: 466 VEVIAILPNTRVLNFIPEDN 485 LP R E Sbjct: 553 STFSIRLPLARSTLTSVEPE 572 >gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1111 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 10/269 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + +L+ + + + + + K FLA+ SHELRTPL+ I+G ++ + G L Sbjct: 419 MAQQLQTSFATLENQNIELKRLSQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLP 478 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +T E + I SG+ LL L+N+ILD S+++ EL ++ L +++ +++ Q Sbjct: 479 TKTT-ENLTMIANSGRRLLTLVNDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLV 537 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGR 399 +KNI++ + L V ADE ++Q++ NL+ NA+KFT G V +T S Sbjct: 538 GQKNIKLINSVPDDLPGVEADENRLQQILYNLIGNAIKFT-ESGTVEITACEKIIDESNH 596 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++I D G GI+E ++ + SF QG + G GLGL + + ++ H G +R Sbjct: 597 YIAVTISDTGIGISEDKLEQIFASFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVR 656 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHES 488 SK+ EG + LP + P E+ Sbjct: 657 SKVAEGSQFTFTLPKAK----SPIQATEN 681 >gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 985 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 143/256 (55%), Gaps = 9/256 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + AE N AKS FL++MSH++RTP+NAI+GF+ + N + Sbjct: 451 TADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNI---DNKK 507 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++Y+G I S HLL+LIN+ILD+SRIE+G+ L E+ +SL D++ + ++ + Sbjct: 508 MVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHA 567 Query: 346 KNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-----TSGR 399 K +E++ +D + V+ D+ + Q++LNLLSNA+KFT GG + V + + Sbjct: 568 KQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQ 627 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I +KDNG G++E + + + F + + S QG GLG+ I ++I+ GG I+ Sbjct: 628 LYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQ 687 Query: 460 SKLREGVEVIAILPNT 475 ++ +G E I LP Sbjct: 688 TEQGKGTEFIVRLPLR 703 >gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] Length = 1341 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 15/283 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAE-LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + +A + DL+ + E + +++E A+E + KS+FLA+MSHE+RTP Sbjct: 674 EGVIGVIFDVTELRAREMDLVEQAKERRQLVANEA--AAKEASRLKSQFLANMSHEIRTP 731 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 + ++G S + + +EY +I+RS LL +IN+ILD S++E+G ++ E Sbjct: 732 ITGVIGMS----ELLLDLELGDEEREYGENIYRSANALLAVINDILDFSKVESGHLDIEE 787 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL---SSVWADEKGMRQVILNLLSNAV 380 SL IV + ML A+ KN++ +I + V D +RQ+I NLL+N++ Sbjct: 788 VQFSLSVIVGDVNKMLSFAAERKNLDFQSEIASDIEEDLVVLGDPGRVRQIITNLLTNSI 847 Query: 381 KFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G V +V I ++D G GI + F QG + Sbjct: 848 KFTKQ-GYVRFSVVKERETPDIIEIKFVVEDTGIGIDAQVRSRLFQPFSQGDASTARRFG 906 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I+++++ G+ + S +G +P R N Sbjct: 907 GTGLGLTISKNLLELMKGRMTLESAEGKGTTATFWIPFNRPPN 949 >gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 1198 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 3/283 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + L ++NV++ + AEL A+ +R E+ + KS F Sbjct: 433 LLDTQTRLQAQQAELEQTNVQLEEYAHRLERQKAELLRAQDDLAANAERLEQSSRYKSEF 492 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L +++++ G L E + Y IH S LL LIN+ILDLS Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 ++EAG+ + +S+ ++ + + A K++ + P + +D + + Q+ Sbjct: 552 KVEAGQVSVELETVSIDATLQSLEELFKPMAGAKHLSLVFDRLPGAPETIVSDGQRVTQI 611 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNAVKFT G V ++V I ++D+G GIA ++ + +F Q + Sbjct: 612 LRNLLSNAVKFTER-GEVALSVSPADDGMLRIDVRDSGIGIAADKLEMIFEAFQQADGST 670 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S+L +G LP Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASELGKGSVFTLWLPL 713 >gi|149178628|ref|ZP_01857214.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148842554|gb|EDL56931.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 667 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 98/490 (20%), Positives = 179/490 (36%), Gaps = 52/490 (10%) Query: 28 PSKMDFDREIIT--LHVESLFRVSPILPLFV---LLVANIGTWFTQNPIFPM-------- 74 P+ E++ H L V L + W T + Sbjct: 12 PAVARRAEELLQKNQHELYQRTDRLFACLMVVQWLAMMAAAFWITPQTWIGIHSQTHLHV 71 Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W+ L + ++ + + +L + I L + + Sbjct: 72 WAACLLGGLITAFPVMLTLLRPGTTLTRHVIAISQMLTSSLLIHLSGGRIETHFHIFGSL 131 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 +L Y+ +LI+ + + + + + + L+ + + L Sbjct: 132 AFLAFYRDWRVLISATTVVVIDHSVLGLFY--PQAIFGVLTANPWQIIEHGAWIIFEDLF 189 Query: 195 TALSF------FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 ++ + + + E + EL A + E E++ Sbjct: 190 LFIAIQQNVQEMKAMARQRAELEETKAFVETEVKNRTHELHTANRIISEKNMVLEQKTAE 249 Query: 249 ---------------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 KS FLA+MSHE+RTP+NAILGF++++ P N E Sbjct: 250 LKHQTQALQAAAEAAEAANLAKSAFLANMSHEIRTPMNAILGFNDILLDGVSQPENIEAA 309 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I +GQ L+ LIN+ILDLS+IEA + E+ S ++ ++ +RA K Sbjct: 310 R----TIKENGQFLIKLINDILDLSKIEAEKMEVEHVPCSPHTLLNNIYSLMNVRAISKG 365 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQY 402 + + +I+ L + D +RQ+++N + NA+KFT G V V + Sbjct: 366 LPLDFQIEGPLPETISTDPTRIRQILINTIGNAIKFTET-GAVKVVTRLINEPDRPARLQ 424 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D+G GI I ++ F Q ++ G GLGL I++ + GG+ I S+ Sbjct: 425 FDVIDSGIGIDAANIDSLFLPFTQADDSMTRKFGGTGLGLTISKRLTELLGGEITIASEP 484 Query: 463 REGVEVIAIL 472 +G + Sbjct: 485 GKGTTFSITI 494 >gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 580 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 12/298 (4%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I Y + + + A L+ L + + + AE + KS FL+ MSHE+RT Sbjct: 151 IVYRTWGWLIGLNIAFAILVLLVYLLSSRQKKLSQDLQYAENASKEKSEFLSKMSHEIRT 210 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G +++ M N E ++ + + S Q LL LIN+ILD++RIE+G+ EL Sbjct: 211 PMNGIIGMTKIAR---MSLENREKLEDSLNKLDMSSQFLLALINDILDMARIESGKVELV 267 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVK 381 E +L+ ++ IM RA +KNI+ + ++ DE + Q+I+N++SNA+K Sbjct: 268 EKEFNLLQMLDNIEIMFAQRAADKNIDFRLIKRGLTGQALIGDELRITQIIINIVSNAIK 327 Query: 382 FTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 FT GG + + V T + D G G++E + + F Q Sbjct: 328 FTPSGGEIILEVRQTPTDTSRYVNLEFIVSDTGIGMSEEFMKHMFEPFEQ-EKQTVRQYG 386 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE--DNHESTQYK 492 G GLGL I Q+++ G + S EG L ++ + P N EST K Sbjct: 387 GTGLGLAICQNLVKMMHGTMSVNSLPGEGSTFTVRLGLEQMDHENPVIMSNSESTDGK 444 >gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] Length = 956 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 10/249 (4%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS F++++SHELRTPL +ILGF+E++ + P + K+Y+ I+ + L + Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASILGFTELMLNRELKP---DKQKKYLTTIYNEARRLTS 637 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LD+ R+EAG+ + + L+ I+ + I Q+ I+I + Sbjct: 638 LINDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIHKIKID-DRSIGNDVILG 696 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+ + QV NL+SNAVK++ GG + + + + + ++D G GI E + + T Sbjct: 697 DKSKVEQVFTNLISNAVKYSPGGGDIIIRL-YQEDKSVLAEVEDKGLGIPEDALDKLFTK 755 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN---- 479 F + + + G GLGL I Q IM H G + S +G P Sbjct: 756 FYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASSYGKGSIFTLSFPLIETAEEPGA 815 Query: 480 -FIPEDNHE 487 +P+ + E Sbjct: 816 ISVPKASAE 824 >gi|313905593|ref|ZP_07838955.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] gi|313469540|gb|EFR64880.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] Length = 446 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 18/313 (5%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-----------SNVKILSCQAEK 221 A+ T + + +L + ++ + + ++ + E Sbjct: 141 AVWTLLFGFAQPICFVILIAFVLSLVLASRVSKRILEPINSINPDDPMQHIDEEEYR-EI 199 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ ++ + +K E+ L + F A++SHEL+TPL+AI G++E++E E + Sbjct: 200 APLLRRIQSQNEQLKQDQKEIEKAALIRQEFTANVSHELKTPLHAISGYAELLENEMVK- 258 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E K + I + L+ +I+DL+R++ G E+ L I + L++ Sbjct: 259 --EEDIKPFASKIRGESSRMTKLVEDIIDLTRLDNGGDEMKWEDCDLYRIAENAVDSLEV 316 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A +E+ + + A + + ++ NL NA+K+ GG V V V TS Sbjct: 317 AATALGVEVTVDGSDATTR--AIPQLIYSIVYNLCDNAIKYNHSGGSVQVRVQQTSYN-I 373 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +S+KD G GI E + F + + G GLGL I + + H G+ ++SK Sbjct: 374 VLSVKDTGIGIPEESRERIFERFYRVDKSRSKEVGGTGLGLSIVKHAVIIHNGKIEVKSK 433 Query: 462 LREGVEVIAILPN 474 L EG E+I +P Sbjct: 434 LGEGTEMIVTIPK 446 >gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 939 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +S ++ AE K FLA+MSHE+RTP+NAIL + I ++ Sbjct: 420 ITKQKQLESELRVAKQEAEHSARVKELFLANMSHEIRTPMNAILNLGQQITKTSL----T 475 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + +IG I+ + +LL +IN+ILD S+IEAG L L D++ + + ++ A+ Sbjct: 476 EHQQFFIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLADLIGQAVQVMTHDAE 535 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRG 400 +K + I +I L ++ D + Q++LNL+ N+VKFT G VH+ + Sbjct: 536 KKGLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNA-GSVHIQCNSKKVAGNQL 594 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +S+ D G GIA + + T F Q +I G GLG+ I + ++ GG ++S Sbjct: 595 ITLSVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSITKQLVDLMGGTIDVKS 654 Query: 461 KLREGVEVIAIL 472 + +G V L Sbjct: 655 EKNKGTTVTVKL 666 >gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] Length = 1424 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 124/255 (48%), Gaps = 10/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + R+ A AKSRFLA+MSHE+RTPL I+ E+ E +G Sbjct: 779 ITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVGH--- 835 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + +S +LL+++N+ILD S+IEAG+ L SL + + +A Sbjct: 836 -EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAH 894 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K ++ +DP L SV D+ + QV+ NLLSNA+KFT G V +T S Sbjct: 895 AKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFT-EHGTVGLTTKLVSQNDGQQ 953 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D+G GI+E I + F Q G GLGL I++ ++ GG + Sbjct: 954 QVCFEVFDSGIGISEEHIRNLFRPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGTLNVI 1013 Query: 460 SKLREGVEVIAILPN 474 SK+ G +P Sbjct: 1014 SKVNLGSTFTISVPL 1028 >gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 946 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 133/236 (56%), Gaps = 6/236 (2%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R++AE N K FL+ +SHELR+PLN ILG++++++ + + + +E + I R+ Sbjct: 567 REKAERANRIKDEFLSILSHELRSPLNPILGWTQLLQTKKL---EEQQVEEALAVIERNV 623 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + LI+++LD+++I G+ L+ + + L ++ I ++++ A+ KNI + + + Sbjct: 624 KLQTQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNN- 682 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D+ ++Q+I NLLSNA+KFT GG+V + + + I++ D G GI +P Sbjct: 683 CYIKGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQV-NQQVQITVTDTGKGIDPEFLP 741 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILP 473 + SF Q ++I G+GLGL I + ++ HGG + S +G + LP Sbjct: 742 HIFESFRQEDVSITRHYGGLGLGLSIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797 >gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 906 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 101/422 (23%), Positives = 170/422 (40%), Gaps = 44/422 (10%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 A + ++ + + + A + + T Sbjct: 475 CACLGFERAVLYLIEQRHLRAVSAWINTGDADQIARLLADAASI--------PLESDTMS 526 Query: 136 YLTIYKSATLLIA-LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + ++I+ ++ + + +F V+ L + A L Sbjct: 527 ADVVRSGQAVIISDVAPHSAPANAVQAPLFGREKRVIGLLVASFDAAGRAPTPRDAAQLM 586 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 T L L ++ + RA+E + K +FLA Sbjct: 587 TFAGMSGL-----------ALENTMLYAGLERQVAQRTAELRAALARAQEADRLKGQFLA 635 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHELRTPLNAI+GFS V+ E GP+ +E + I+R+G+ LL+LI+E+LDL+RI Sbjct: 636 AVSHELRTPLNAIIGFSTVMLDEIDGPIT-PLQREDLKIINRNGRFLLHLIDELLDLARI 694 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG+ +L + + + ++ E +Q + I + + L D +RQV+LN Sbjct: 695 EAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACGDAARIRQVLLN 754 Query: 375 LLSNAVKFTAIG---------------------GRVHVTVGWTSGRGQYISIKDNGPGIA 413 LLSNAVKFT G G V V G +S++D G GIA Sbjct: 755 LLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIAVSVRDTGIGIA 814 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + +F Q + + G GLGL I++ ++ HGG+ + S+ +G ILP Sbjct: 815 AEDLTRIFEAFNQVRSG--NRQHGSGLGLAISRRLIEAHGGRIWVESEPGKGSVFTFILP 872 Query: 474 NT 475 Sbjct: 873 CA 874 >gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1148 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 12/350 (3%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 TL + S TL ++ L + A + S ++ Sbjct: 575 TLWTYLNSGLSAYLLLMSITLTFLATLLWLIYYHESQV-----LAQTAASLLPQLRSGYL 629 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRKRAE 243 S + ++++ +T + + + Q I + + R+ A+ Sbjct: 630 KIFSALVFASAIIAWWLVLTGQSRRVAQEESNRQTGLLQREIELHQKTDAELQLARQVAD 689 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + N AKSR++ +SHELRTPLN+ILG++++++ +T P ++ + I I RSG+HLL+ Sbjct: 690 QANQAKSRYITGISHELRTPLNSILGYAQLLDNDTSIP---DSRLQAIRVIRRSGEHLLS 746 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVW 362 LI LD++RIE G+ + + +++ + M +L+A+ K I ++ L V Sbjct: 747 LIEGTLDIARIEGGKLTFDIKPLRFPEFIKQIVSMFELQARNKGINFAYEVTSELPKMVR 806 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD+K + Q+++N+L NAVKFT GG V V + + I I+D GPGI EI +V Sbjct: 807 ADQKRLSQILINILGNAVKFTQHGG-VVFRVQY-ARELVQIEIEDTGPGIQTHEIDSVFE 864 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F +GS A G GLGL I++ + GG+ + S + +G L Sbjct: 865 PFARGSAAANDRIGGTGLGLTISKLLTQLMGGEISVNSVVGKGTIFKIKL 914 >gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1947 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 20/286 (6%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE--NLAKSRFLASMSHELRT 262 L + ++ AE + E+E A+S +E K AE + KS FLA+MSHELRT Sbjct: 1230 EELEQKARQLAEQNAEVERKNKEIEQARSALEE--KAAELALTSKYKSEFLANMSHELRT 1287 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN+IL + + G L+ E ++ +IH +G LLNLIN+ILDLS+IE+G + Sbjct: 1288 PLNSILILGQQLAENGAGNLS-EKQVDFARNIHSAGADLLNLINDILDLSKIESGTVAVE 1346 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 I+ + + A KN+ + DP+L D K ++Q+I NLLSNA K Sbjct: 1347 AEDITFASLRESVERNFRHIADNKNLPFYVDFDPALPRQFSTDSKRLQQIIKNLLSNAFK 1406 Query: 382 FTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGS 428 FT+ G+V + + +SI+D G GIA + + +F Q Sbjct: 1407 FTSQ-GQVSMKAEAATEGWTVDHPVLKRAPNVIALSIRDTGIGIAPEKQRLIFEAFQQAD 1465 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ + GG+ + S EG LP Sbjct: 1466 AGTSRKYGGTGLGLAISRELATLLGGEIRLNSVPGEGSTFTLYLPL 1511 >gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1124 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 26/302 (8%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----------SDETRKRAEEENLAKSRF 252 + + N + EK E A++ R+ AEE AK+ F Sbjct: 412 LGEVVLAFNRVADRMRTEKTQAEVESRRARAAEEEVRSRESELVRARQVAEEAVRAKAAF 471 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHE+RTPLN ++G S ++ + + ++ + I S LL +I++ILD S Sbjct: 472 LATMSHEIRTPLNGVVGMSTLLAETAL----DAEQRDILQTIRLSSDQLLAVISDILDFS 527 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-----IDPSLSSVWADEKG 367 +IE+GR++L +S+ +++ E + RA+EK IE+ ++ D Sbjct: 528 KIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAAAGGPPPAILGDVTR 587 Query: 368 MRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLT 422 +RQ+++NL++NAVKFT G VH + S+ D G GI + + Sbjct: 588 LRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEFSVHDTGIGIPPERVGALFE 647 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q + G GLGL I + ++ GG+ + SKL +G L +P Sbjct: 648 AFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKGSIFSFT--VRAALAELP 705 Query: 483 ED 484 ++ Sbjct: 706 KE 707 >gi|218676813|ref|YP_002395632.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] gi|218325081|emb|CAV26919.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] Length = 1010 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%) Query: 223 DLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L E + + R AE+ + AKS FLA+MSHE+RTP+N +LG + +++ + Sbjct: 441 QLQKTNEKLNVEVENHAKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 PL Y I+RSG++LL ++N++LD S+IEAG E+ ++ L +V++ ++ Sbjct: 501 DPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397 + RA EK + I+ ++ W D + Q++ NL+ NA+KFT G + +++ Sbjct: 557 EGRAAEKKLNFDFHIESNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIED 616 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI E + +F Q G GLGL I++SIM G Sbjct: 617 ENRVMFEVSDTGVGIDSKEQACLFDAFTQTGSGRN-KTGGTGLGLAISKSIMQAMNGDIG 675 Query: 458 IRSKLREGVEVIAILPN 474 + S+ EG + +P Sbjct: 676 VHSEEGEGSQFWFSVPL 692 >gi|167646501|ref|YP_001684164.1| integral membrane sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167348931|gb|ABZ71666.1| integral membrane sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 554 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 151/340 (44%), Gaps = 17/340 (5%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 + L+++A + + + + ALS L + + T Sbjct: 223 LAVPGLTLTAKPSASPSVPLHDARGVTIGALSWTPANPGMSLLKAALPAIVAVFLVLTLA 282 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + LF+ + L A + +++AE N+AK++FLA+MSHE+RTP Sbjct: 283 SLVLFRRVAETLDRMA----------RGRESLVVAKEQAEAANVAKTQFLANMSHEIRTP 332 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG ++++E + + ++ +E + I SG LL L+N ILD++R+E G L Sbjct: 333 LNGVLGMAQIMESDAL----SDRQRERLAVIEESGNALLALLNSILDMARLETGAIRLRR 388 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 A L +V + A K I++ Q + P W D +RQV+ NL++NAVKF Sbjct: 389 EAFDLGALVDSSCAVFSGAAVSKGIKLCQALTPESLGAWVGDPLRLRQVLGNLVANAVKF 448 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 T G V V V ++ + D G G+A + + F Q + + +G GLGL Sbjct: 449 TDS-GTVRVHVEESALG-LRFEVSDTGIGVAPQDQLRLFKMFSQVDSSSTRSHEGSGLGL 506 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 I ++ GG +RS EG LP R P Sbjct: 507 AICHDLVELMGGAIGMRSVPGEGSTFFFDLPLQRAPAERP 546 >gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 624 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 11/251 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + + R +AE + KS FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 379 ITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSALLA----ATEDM 434 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y I + + LL LIN++LDLS++E+G EL S +L +++ E + + Sbjct: 435 AEKELYNSLISHNNELLLELINDVLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQLA 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +E+ V D ++Q++ N LSNA+K T G V V S I Sbjct: 495 A-GVELRTHYLDQGFLVELDRLRIKQILNNFLSNALKNT-TSGYVEVFYEIDSS-YVRIG 551 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + + F + S QG GLGLPI +SI+ G+ S+L Sbjct: 552 VRDTGRGIPQNMLEKIFERFEKVD----SFTQGAGLGLPICKSIVDKMNGRIWADSQLGI 607 Query: 465 GVEVIAILPNT 475 G + LP + Sbjct: 608 GTTFMVELPCS 618 >gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1837 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 5/267 (1%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + E+ AE E + R+ AE N K FLA +SHELR+PLN IL Sbjct: 1426 RGVIGAFLDVTERKQAEAEREQLLARERSAREEAEAANRIKDEFLAVLSHELRSPLNPIL 1485 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G++ +++ + ++++ + + + I R+ + + LI+++LD+SRI G+ +L+ S++ L Sbjct: 1486 GWANLLQRQ---KVDDQVFHQALTTIERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDL 1542 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + ++ I ++L A+ K+IEI +D + V D ++Q++ NLLSN VKF+ GG+ Sbjct: 1543 VVVILSAIETVRLAAEAKSIEIRTHLDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQ 1602 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V + + G I ++D G GI +P V F Q G+GLGL I I Sbjct: 1603 VDIYLESV-GNEAQIRVQDRGKGINPKFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYI 1661 Query: 449 MANHGGQFLIRSK-LREGVEVIAILPN 474 HGG S + +G LP Sbjct: 1662 TEMHGGTVQAESPGVGKGATFTVKLPL 1688 >gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] Length = 1215 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 16/302 (5%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---- 244 LA L L +SN ++ A ++E+ ++TR+ EE Sbjct: 711 LAAELRARSEELQSRQDELQRSNAELAEKAALLARQNHDIEIKNFEIEQTRQEIEERARQ 770 Query: 245 ---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + KS FLA+MSHELRTPLN++L + ++ L+ + EY IH +G L Sbjct: 771 LALSSRYKSEFLANMSHELRTPLNSLLILARLLAQNPANNLSPKEV-EYANVIHSAGSDL 829 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L LIN+ILDLS++EAG+ ++ +L ++ + + +EK + ++ P + + Sbjct: 830 LQLINDILDLSKVEAGKIDIHLERFALSALLDDVQGIFCPIIEEKGLRFTVEVAPDVPDA 889 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQY----ISIKDNGPGIA 413 + +D++ + QV+ NLLSNAVKFT +GG R+ V + ++ D G GIA Sbjct: 890 LVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVVSDRVLDDERRPAVAFAVIDTGIGIA 949 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E + + +F QG + G GLGL IA+ + A GG +S+ +G LP Sbjct: 950 EENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREVAALLGGVIRAQSEFGQGSTFTLYLP 1009 Query: 474 NT 475 + Sbjct: 1010 LS 1011 >gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] Length = 738 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 8/240 (3%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E ++ AE+ AKS FLA+MSHE+RTP+NAI+G S + + ++ + YIG IH Sbjct: 2 REAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDL----DDQQRNYIGKIH 57 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +G LL +IN+ILD S++EAG+ EL L D++ ++ +A +K +E+ + Sbjct: 58 NAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETA 117 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIG--GRVHVTVGWTSGRGQY-ISIKDNGPG 411 + + D + QV+ NL NA+KFT G + V + Q + D G G Sbjct: 118 GDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGIG 177 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++E + + +F Q + G GLGL IA+ ++ GG L+ S G I Sbjct: 178 MSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFS 237 >gi|325106876|ref|YP_004267944.1| integral membrane sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967144|gb|ADY57922.1| integral membrane sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 556 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 10/355 (2%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 W T W I L F F + A Sbjct: 41 WNCGTWTPIEGWLHITADIGIFLAYLAIPCALLYFAFRRKDVPFNGLLLLFSAFILCCGT 100 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + + + IT + + V +L A K L V + Sbjct: 101 THLLEAVIFYSPIYRIAGLLKLITAVVSWATVVVLWRMAPKLLRYPSLAVDNEALKQA-- 158 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + AKS FLA+MSHE+RTP+ AI+G +E++ + I I R+ H Sbjct: 159 -----SQAKSEFLANMSHEIRTPMTAIIGNAELLYELGDLERAPAERLDAIQAIKRNSSH 213 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL++IN+ILDLS+IEAG+ IV+E + +L +RA+ K + + +++ + Sbjct: 214 LLDVINDILDLSKIEAGKLSHQLDRHDPQQIVQEVLDLLSVRAEAKQLVLSSRVEGLVPE 273 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGW-TSGRGQYISIKDNGPGIAEGEI 417 + D+ +RQ++LN++ NA++FT G +V + T + + D G GI + Sbjct: 274 TILTDDTRLRQILLNVVGNAIRFTKSGSVKVVMRFRETTQRNQLEMEVIDTGIGIDQETQ 333 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q + G GLGL I++ + GG + S+ G + + Sbjct: 334 NRLFEPFTQADTSTTRQFGGTGLGLAISRRLARTLGGDLTLESEPGIGSRFLISI 388 >gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 690 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 50/400 (12%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 V P + + I L A + + +F F + Sbjct: 152 VLPDEVSSSRVGILFFEYDLTRAKQQAFCDALRRSLMFNIFLTIFCLGLWLFFDLTLTRR 211 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD---------LIAELEVAKSLSDE 237 +SL + +L+ + + +++ D LI + E+ K E Sbjct: 212 VSLLVAASNSLAEGNFNVRTRLLGSDELVQISVAFDHMASKIQENTLILQQELIKREIIE 271 Query: 238 TRKRA----------EEEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + E + AKS FL++MSHE+RTP+N ++ +E++ ++ + +E Sbjct: 272 AKLKETNEQLSISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLSMKNL----SE 327 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I SG LL +IN+ILD S+IE+G +L E L DI++ +L +A Sbjct: 328 EQQDIVQTIRDSGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQAAT 387 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 KNI + I+P + + + D +RQV+LNL+SNA+KFT G V + V + Sbjct: 388 KNIHLEYSINPDVPTNILGDATRLRQVLLNLISNAIKFT-EHGHVSIAVLANKHQEDQKI 446 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ISIKD G GI + + F Q +I G GLGL I++S++ GG+ + Sbjct: 447 ELMISIKDTGIGIEHDRLNQLFQPFTQADTSISRKYGGTGLGLAISKSLVNLMGGKIWVE 506 Query: 460 S--KLRE----------------GVEVIAILPNTRVLNFI 481 S + G VL Sbjct: 507 SLGNIGGHPPENWLSNWVNNHLPGSIFHFTFIAKVVLPSS 546 >gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 710 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 123/265 (46%), Gaps = 18/265 (6%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E + EL + + AE N AK++FLA+MSHE+RTP+N ++G +E+ + Sbjct: 288 EAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSHEIRTPMNGVMGMTELALQTDL 347 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +EY+ +S LL++IN+ILD SRIEAGR EL+ + SL + C+ + Sbjct: 348 TP----EQREYLDLARQSALSLLDIINDILDFSRIEAGRMELARAPFSLRRTLGSCLRLF 403 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----- 393 A + ++ + + D + QVI NL+SN +KFT G V VTV Sbjct: 404 DNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVSNGLKFT-RDGSVRVTVDTAPP 462 Query: 394 -------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 S+ D G GI + + F Q + G GLGL I++ Sbjct: 463 LHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYFTQLDAGLSREAGGTGLGLSISR 522 Query: 447 SIMANHGGQFLIRSKLREGVEVIAI 471 +++A GG+ + S+ G Sbjct: 523 NLVALMGGRIWVESEPNRGSTFFFT 547 >gi|238925291|ref|YP_002938808.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656] gi|238876967|gb|ACR76674.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656] Length = 440 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 139/316 (43%), Gaps = 15/316 (4%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 V + ++ + + + L + +K + A + Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190 Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + ++ + R + E ++ F A++SHEL+TPL AI G++E+IE Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G + E + +I R+ Q LL+LIN+I+ LS +++ + + L +V++CI Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCI 307 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 LQ+ A+++ + + + V + + + +++ NL NA+++ GG V+VTV Sbjct: 308 ENLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G ++++DNG GI + + V F + + G GLGL I + I+ H Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGL 424 Query: 457 LIRSKLREGVEVIAIL 472 + S++ G + Sbjct: 425 TLDSEVGRGTTIKVEF 440 >gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1331 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 6/244 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + AE N K FL+ +SHELR+PLN ILG++++++++T+ K+ + I + + Sbjct: 956 EEAERANRIKDEFLSILSHELRSPLNPILGWAQLLQIKTLDQTTT---KQALATIEHNAK 1012 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L++++LD++RI G+ L E+ ++L+ ++ + +++ A K++ + ++ + Sbjct: 1013 LQTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAAALEVVKTAADVKSVTLQPELT-DIG 1071 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V DE ++Q++ NLLSNA+KFT GGRV + + + Q I++ D G GI +P Sbjct: 1072 QVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLEQVEDQAQ-ITVTDTGIGIQPQFLPH 1130 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVL 478 + SF Q +I G+GLGL I + ++ HGG S +G LP + Sbjct: 1131 IFESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGGTITAESPGENQGATFTVQLPLLKAA 1190 Query: 479 NFIP 482 + P Sbjct: 1191 SPSP 1194 >gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 1202 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 3/283 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + + L ++NV++ + A+L A+ +R E+ + KS F Sbjct: 433 LLESQTRLEAQQAELEQTNVQLEEYANRLERQKADLLRAQDDLAANAERLEQSSRYKSEF 492 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L +++++ G L E + Y IH S LL LIN+ILDLS Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +S+ ++ + + A K++ + P + ++ +D + + Q+ Sbjct: 552 KVEAGQVNVELETVSIDATLQSLEELFKPLAGAKHLSLVFDRLPGVPDTMVSDGQRVTQI 611 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNAVKFT G V ++V I ++D+G GI ++ + +F Q + Sbjct: 612 LRNLLSNAVKFT-AHGEVALSVAPADDDMLRIDVRDSGIGIPADKLEMIFEAFQQADGST 670 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S++ +G LP Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713 >gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 1384 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 143/343 (41%), Gaps = 60/343 (17%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-----ETR 239 + + G++ L+F++ + + + ELE K+ +D + R Sbjct: 599 APVMVGGLVYGTLNFWSPKPLRQPFKAIDKELLKLMAQWVGGELERQKTATDATDLAKAR 658 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 A AKS FLA+MSHE+RTP+NA++G + ++ ++ E++ I SG Sbjct: 659 DEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKS----DQTEFVETIRSSGD 714 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LIN+ILD S+IE+ +++L E L + E I +L + E+ +E+ IDP Sbjct: 715 ALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFIDPETP 774 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR--------------- 399 + V D +RQ+++NLLSNAVKFT+ G V V+V Sbjct: 775 TIVIGDVTRVRQILVNLLSNAVKFTSD-GEVLVSVSGRKLEIEENVQNLAVENISESDTC 833 Query: 400 ------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 S+KD G GI + + F Q + G GLGL I++ + G Sbjct: 834 DIWPAYEIQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAEMMG 893 Query: 454 GQFLIRS--KLRE----------------------GVEVIAIL 472 GQ + S + G + Sbjct: 894 GQMWVESMGVVGGNPPATYRLPDLYEHSAAVNEKSGSTFYFTI 936 >gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 792 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTPL+A++G+SE++ E E + + I S +HLL LIN++ Sbjct: 277 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 335 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAGR L+ ++ ++ + Q +K + L ++ D+ + Sbjct: 336 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKL 395 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425 RQ ++NL+ NA KF+ G + + V G S+ D G G+ + +I + F Sbjct: 396 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 454 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL I ++ + GG + S EG LP Sbjct: 455 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 502 >gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 648 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 145/310 (46%), Gaps = 19/310 (6%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + A + + A+ L F + +S + E +I ++V+ ++ Sbjct: 65 ALIASKEQKLPSVLSRVFNASPLPLFNQAKQLIKQSITVKPASMCESCSIIQVIDVSNAV 124 Query: 235 SDE--------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + E R+RAE KS FLA+MSHE+RTPLN ++G E++ E + ++ Sbjct: 125 AREKALEKQVLERQRAEAA---KSAFLANMSHEIRTPLNGVIGMLELVADEPL----SDK 177 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++++ S + LL +IN+ILD S+IEAG+ ++ L+ + I A +K Sbjct: 178 LQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAANKK 237 Query: 347 NIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQYI- 403 I + + V AD++ +RQ+++NLLSNA+KFT G V V + + + Sbjct: 238 AISLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKIDSQTAQLV 297 Query: 404 -SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI I + F Q +I G GLGL IA+ + GG+ + SK+ Sbjct: 298 CKVLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSKV 357 Query: 463 REGVEVIAIL 472 +G + Sbjct: 358 GKGSCFEFEI 367 >gi|86148721|ref|ZP_01066997.1| sensor protein TorS [Vibrio sp. MED222] gi|85833490|gb|EAQ51672.1| sensor protein TorS [Vibrio sp. MED222] Length = 1007 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%) Query: 223 DLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L E + + R AE+ + AKS FLA+MSHE+RTP+N +LG + +++ + Sbjct: 441 QLQKTNEKLNVEVENHAKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 PL Y I+RSG++LL ++N++LD S+IEAG E+ ++ L +V++ ++ Sbjct: 501 DPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397 + RA EK + I+ ++ W D + Q++ NL+ NA+KFT G + +++ Sbjct: 557 EGRAAEKKLNFDFHIESNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIED 616 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI E + +F Q G GLGL I++SIM G Sbjct: 617 ENRVMFEVSDTGVGIDSKEQACLFDAFTQTGSGRN-KTGGTGLGLAISKSIMQAMNGDIG 675 Query: 458 IRSKLREGVEVIAILPN 474 + S+ EG + +P Sbjct: 676 VHSEEGEGSQFWFSVPL 692 >gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 964 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 10/276 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L + + R AE AKS FLA MSHELRTPL ++G +++ L Sbjct: 422 EHLRESAQRLELARDAAERATKAKSDFLAVMSHELRTPLAGVIGVLDLLRNNPPAHL--- 478 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +EY S + LL ++++ILD ++IEAG+ + ++ + +LRA+ Sbjct: 479 -LREYTAVARDSAESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEA 537 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY- 402 K +E ++ V D +RQV+ NL +NA+KFT G V +T Sbjct: 538 KKLEFKHIFSANMPEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVF 597 Query: 403 -ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I+++D G GI + + F Q ++ G GLGL I +++ + G + S+ Sbjct: 598 LIAVRDTGCGIDQATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESE 657 Query: 462 LREGVEVIAILPNTRVLN--FIPEDNHESTQYKCYA 495 G ++P R + +P ++ + A Sbjct: 658 PGRGATFTFVVPLARPRSDVVVPAATAKAPDLRSKA 693 >gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1048 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 135/315 (42%), Gaps = 30/315 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 T L + + + E+E K + + E + KS FLA+MSHELRTP Sbjct: 576 TRALERQKQDVQQKNVLLEQTQTEMERTKKAIENKAQELELASKYKSEFLANMSHELRTP 635 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+IL ++++E L E EY I +G LL LINEILDLS++EAG+ ++ Sbjct: 636 LNSILILAQMLEENKAANLT-EQQVEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHL 694 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 I L D+V A+ K + I+ L + D ++Q+I NLLSNA KF Sbjct: 695 ENIVLADMVMMVKQKFNHVAETKGVLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKF 754 Query: 383 TAIGGRVHVTVGW-----------------------TSGRGQYISIKDNGPGIAEGEIPT 419 T G V +T+ + IS+ D G GI + + Sbjct: 755 TNE-GEVKLTIQRPTERIPLLLTGISLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLM 813 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT---- 475 + +F Q + G GLGL I++ + G ++S+ +G +P Sbjct: 814 IFEAFQQADGTTSRSYGGTGLGLSISRQLARLLCGDIQLQSEEGKGSTFTFYVPENLEMI 873 Query: 476 RVLNFIPEDNHESTQ 490 R L + E TQ Sbjct: 874 RNLAVQQQSTTEDTQ 888 >gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 844 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 159/321 (49%), Gaps = 21/321 (6%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET-----RKRA 242 L + A +L L + ++ A I++ + A+ L+ R Sbjct: 399 VLRELGAESLIVVALGIRDLQFGVLTLIQTDAAHRHKISDFKTAEELARRASIAIDNARL 458 Query: 243 ----EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ + AKS F+A+MSHE+RTP+ A+LG+++++ G N+ +++ I ++G Sbjct: 459 YKIGQQASAAKSEFVANMSHEIRTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNG 514 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL++IN+ILDLS+IEAG+ E + +++ + M+ +RA EK ++ + ++ Sbjct: 515 SFLLDIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTI 574 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAE 414 + +D K +RQ+++NL+ NAVKFT+ G + + + + + + D G GI + Sbjct: 575 PSQIESDPKRLRQILVNLIGNAVKFTSE-GSIRLVISYDASGEPPAIQFEVIDTGIGITD 633 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ + F QG ++ A G GLGL I+ + GG + SK G + Sbjct: 634 AQLSQLFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSGTTFTCQITA 693 Query: 475 TRVLNFI---PEDNHESTQYK 492 V + P++ H+++ K Sbjct: 694 GLVESASLIQPQNKHKTSNDK 714 >gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 342 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 5/245 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 +E + A++ F++++SHELRTPL +I GF + + L+ ++ ++ I L Sbjct: 97 QELDQAQTDFVSTVSHELRTPLTSIKGFVDTLLRSG-SQLSEAQHRRFLRIIKNQADRLT 155 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ +IL +SRI++GR + + L +++ L + + + +L VW Sbjct: 156 RLVEDILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRREL--PGALPEVW 213 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTV 420 AD+ + Q++ NL+ NA+K++ G V V+ +I+++D G GI E + + Sbjct: 214 ADQDRLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQI 273 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + + +G GLGL I +S++ + GG + S+ G LP + Sbjct: 274 FNRFSRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLPAVQAGAI 333 Query: 481 IPEDN 485 P + Sbjct: 334 EPGEE 338 >gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046] gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046] Length = 937 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 24/366 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182 LV P + Y+ +LIA + L +L + P+ + Q + + Sbjct: 156 LVVELDNQPLQIARYRVLIVLIATGLLTLLLLLLCLNFYSRRWIAPMYEIRMQLQRLNAD 215 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236 + L I + + + L + + +L + Sbjct: 216 TLDQHMLINSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEDDLRRTLDTLEVQNITY 275 Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R +A + +KS FLA++SHELRTPLN+I GF ++ + + Y+ I Sbjct: 276 RQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNND---QNLYLQTIR 332 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S HLL LIN++LD S+I+AG+ EL + L + + + + ML A +K+I++ Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 ++ V D +Q++ NL+SNA+KFT G + V + S++D+G Sbjct: 393 DNVPKHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEQDDIGQCLLHFSVQDSGI 451 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-----REG 465 G++ + + SF QG ++ G GLGL I++ ++ GQ +G Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKG 511 Query: 466 VEVIAI 471 Sbjct: 512 STFWFT 517 >gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 917 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 9/285 (3%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 Y + + + + VA+ + +K AEE N KS FLA+MSHE+ Sbjct: 387 VYFESSIHYFTLNNQKIALSINHDVTSFRVAQEQMLQAKKIAEEANKTKSIFLANMSHEI 446 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN I+G S+++ + E +E I Q+LL+L+N ILD S+IEA + E Sbjct: 447 RTPLNGIIGMSDLMLR---VKMTPEEQRETTKTIISCSQNLLHLLNNILDFSKIEAEKVE 503 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNA 379 +S + L +I+ E I M ++RA+EK+++I L ++W D+ ++Q++ NL++NA Sbjct: 504 ISSNVFDLKEIIGESINMYKIRAKEKSLDISAGFQDGLENLWIGDKVKIQQILNNLINNA 563 Query: 380 VKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT GR++V V + G ++ D G GI + ++ + +F Q + Sbjct: 564 IKFTIE-GRINVLVNKLNDDGSCCELQFTVSDTGIGIEDKDLNKLFVAFSQVDGSYTRQF 622 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 G GLGL I++ ++ GG+ + S + G L T+ + Sbjct: 623 GGTGLGLSISKKLVELMGGRIWVESTMGVGSRFNFTLKLTKANDS 667 >gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 765 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 17/313 (5%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 +V+ +MS ++ + + ++ + + E D+I + Sbjct: 231 IVLFSVIFFLMSFFIILFRIIYPIDLLRVAMLKLSSNDMSVELDKNKYDDEVGDMIGSVR 290 Query: 230 ----------VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ + A N AKS FLA MSHELRTPLNAILGFS +++ Sbjct: 291 IFKDNTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKSM- 349 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + K + I RSG+HLLN+INEIL+LS+IEAG+ E+ +L +++ + + Sbjct: 350 --NATQEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIF 407 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 R +EK +E +D +L V DE +RQ+++NLLSN++KFT G + + + + Sbjct: 408 AFRCKEKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNE-GEISLYL-YEKS 465 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + IKD G GI ++ V F Q + G GLGL I + ++ G Sbjct: 466 QKLFFEIKDTGIGIESKDLKRVFKPFEQI-KHDDYNKNGTGLGLSITKELVTLMNGSIYA 524 Query: 459 RSKLREGVEVIAI 471 +SK+ G + Sbjct: 525 KSKVNVGTQFYFS 537 >gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 463 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 13/308 (4%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 ++++L + + + ++L + + T + + + + D++ Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKSMAQGRFDVRVSKRYDDEIGEL 227 Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + ++ E ++ K+ F+AS+SHELRTPL +I+G+ I + + E Sbjct: 228 GDTLNYMAQEVANQQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 KE + I R + L L++E+LD S+ +AG L +S ++L ++++ ++ RA+ K Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I + +D L + ADE ++QV +N++ N+ KFT GG + + +G + G I I+ Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI E ++P V F +GS + G GLGL I I+ H G+ I S + +G Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455 Query: 467 EVIAILPN 474 V ILP Sbjct: 456 RVDVILPV 463 >gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 705 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 6/255 (2%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 ++ E+E AE N AKS FLA MSHE+RTP+N +LG +E+++ + Sbjct: 2 MLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTS-- 59 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++++ ++RSGQ LL +I++ILD S+IEAG+ L +L ++ + + +++ A Sbjct: 60 --KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNA 117 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 Q K +E+ + S+ + D +RQ++ NLL NA+KFT G V ++ ++ Sbjct: 118 QRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFT-EHGHVALSAAYSDDGRIV 176 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D+G GIA + F Q + G GLGL I++ + GG + S Sbjct: 177 FKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDSTP 236 Query: 463 REGVEVIAILPNTRV 477 +G P Sbjct: 237 GKGSVFTVTTPFEPA 251 >gi|91976985|ref|YP_569644.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91683441|gb|ABE39743.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 945 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 100/441 (22%), Positives = 171/441 (38%), Gaps = 34/441 (7%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 L+ ++ G + P L A + +G + +W L Sbjct: 251 LYRFILTGGGDVVLRAPGVLGLIAHVLLCTMAAMFIGI---------DRIAIWWRTLCTF 301 Query: 114 Q--IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + G + L + A +IA+ S F V L+ P V Sbjct: 302 SAILLAGSLFAAFGDYRTTVSITTVLQVVYEALWIIAVLDSWRRGFGNSRLVLLASGPAV 361 Query: 172 V--ALSTQAIMSMHVLDI------------SLAGMLATALSFFTYITYHLFKSNVKILSC 217 V L I+ + + +L A+ I K+ +++ Sbjct: 362 VRFFLYLGHILGIWPASWSVGSEITWNNLSIMLLLLFIAIGRLREIESARDKAQQDLVAF 421 Query: 218 QA-EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 Q E++ L ++ A E N AKS FLA MSHE+RTP+N +LG +++ Sbjct: 422 QEHERERLQRAVDERTRELQTALVAAGEANRAKSDFLAVMSHEIRTPMNGMLGAIHLLKS 481 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + + + R+G +L I ILD ++I + E S +A L ++ + + Sbjct: 482 MPLQG----KVRTAVNVAERTGAAMLATIGGILDFAKISDSKPEPSYAAFDLRALLADVV 537 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++ LRA++K++ + +D L +V D +RQ++LNL+ NA+KFT G V V+ Sbjct: 538 AIMSLRAEQKSVSLKLVVDQVLPATVMGDADLLRQILLNLVGNALKFTET-GEVCVSAAP 596 Query: 396 TS--GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + + D G GI + + F Q +I G GLGL I + + G Sbjct: 597 DAIHVDWIRLEVADTGIGIPRDRLDRLFEPFVQADSSIARRFGGTGLGLAICRRLTEAMG 656 Query: 454 GQFLIRSKLREGVEVIAILPN 474 G S+ +G LP Sbjct: 657 GCITADSQPGQGSRFQVRLPL 677 >gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 681 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 132/238 (55%), Gaps = 7/238 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R AE + AKS F++ MSHELRTPLNAILGF++V++ E + ++++Y+ I RS Sbjct: 291 ARDEAERASRAKSDFVSRMSHELRTPLNAILGFAQVLDREPL----QASHQDYVRLIMRS 346 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQHLL L+N++LDL++IEAGR L + E ++ RA +K ++ K+ Sbjct: 347 GQHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAED 406 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L V D +RQV++NL +NAVKFT G V + + + SI+D G G+ E Sbjct: 407 LPSHVIGDPTRLRQVLINLTANAVKFTEA-GSVELAIDA-HDQRLLFSIRDTGIGMDEAA 464 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + FGQG +I G GLGL IA+ ++ GG+ + SK G LP Sbjct: 465 LGRLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLPL 522 >gi|160940248|ref|ZP_02087593.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC BAA-613] gi|158436828|gb|EDP14595.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC BAA-613] Length = 1118 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 16/316 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILS-CQAEKDDLIA---ELEVAKSLSDETRK 240 + + ++ + L AEK + E + AK +E Sbjct: 659 FRHGFSPLWLRLEVHMVASKEGRPRTAIIALRNISAEKQRELEYYDEEKKAKHALEEAYD 718 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 N AKS FL+ MSH++RTP+NAI+G + + + N + ++ + I SG H Sbjct: 719 SLNRANQAKSDFLSRMSHDIRTPMNAIMGMTAIAQSNL---NNRDKIEDCLSKISLSGSH 775 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLS 359 LL+LIN++LD+S+IE+G LSE A L ++V E ++++ K E+ + Sbjct: 776 LLDLINKVLDMSKIESGNVGLSEDAFCLEELVEEVSLIVKPDMDSKGQELSISLKEIDHH 835 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAE 414 +V+ D ++Q+++NLLSNAVK+T+ G + V++ ++D+G G+A Sbjct: 836 AVYGDAVRVKQILINLLSNAVKYTSDRGHIAVSLEEKLSSESGVGCFEFVVEDDGIGMAP 895 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F + + S QG GLGL I ++++ G + S+L G IA + Sbjct: 896 EFLEKLFMPFERAEDSRVSQVQGTGLGLAITRNLVQMMNGTIRVESQLNRGTRFIATIYL 955 Query: 475 TRVLNFIPEDNHESTQ 490 ED E +Q Sbjct: 956 KLAGE---EDTGERSQ 968 >gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM] gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM] Length = 618 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMIND 433 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + +K I +++ Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALW 493 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLAKI 552 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612 >gi|260769147|ref|ZP_05878080.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP 102972] gi|260614485|gb|EEX39671.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP 102972] Length = 834 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 7/282 (2%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + + + A+ S RK AEE ++ FLA MSHELRTPLN ILG S++ Sbjct: 422 RIESIITQGQDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQL 481 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ + E + + SG+HLL ++N+ILD S+IE G++ + ++ L+D+V Sbjct: 482 LKRTV----TEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVS 537 Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + + +EK + + + V D+ + Q++ NLL+N+VKFT G + + Sbjct: 538 AIERIYRPLCREKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQL 597 Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + T I++ D G GI E ++ + F Q G GLGL I S++ Sbjct: 598 HLLETEAGAKLEITVLDTGIGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIE 657 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG ++S G LP V H + + Sbjct: 658 MLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNEGKSR 699 >gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 895 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 93/445 (20%), Positives = 184/445 (41%), Gaps = 23/445 (5%) Query: 47 RVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW 106 RV +L + ++ ++ +F + + + L + + Sbjct: 29 RVGTLLIVLLMPFGSLLDYFVYPEQLGFFFFLRILCSVIALF----FWWIMKGPLGLRFY 84 Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNF---MLPYAV 163 R++ L + +L+ G +P Y + L ++ + +L + Sbjct: 85 RVFGLFLFALPSVFISLMIYYTEGVSSPYYAGLNLMLIGLSWVAQMYVVESLISVLLTLL 144 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + ++ ++ I L G + S+F L +S + + + E D+ Sbjct: 145 IYGLACYFHGAVSIPLLFNNLYFIVLTGTIGVTGSYF------LNRSRYREYALRHELDE 198 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 +ELE + E + AK+ F A++SHELRTPL ++G + + P Sbjct: 199 NRSELEASNLKLVE-------MDKAKTNFFANISHELRTPLTLLIGPLDRLRHNGDQPSA 251 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E +E + + ++ L+ LIN++L+L R+++G +L + + L + A Sbjct: 252 KE-REELLDIMQQNAMRLMRLINDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPMA 310 Query: 344 QEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 E+ ++ +I+ +V D + +++LNLL NA+KFT GG++ + G Sbjct: 311 SERRLDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARR-DGEFLR 369 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D+G GIA E+ ++ F Q + QGVG+GL + + + HGG S Sbjct: 370 IEVEDSGQGIAAEELASIFDRFWQAETSSNRRYQGVGIGLALVRDLARLHGGDVEASSVQ 429 Query: 463 REGVEVIAILPNTRVLNFIPEDNHE 487 EG + L + +P + E Sbjct: 430 GEGTVMRVSLNAEVPVEPLPLEISE 454 Score = 136 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 22/301 (7%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSLSDETR 239 LD L S + ++V + Q E L LE K + Sbjct: 597 FQALDAGATDFLTKPFSSTELLARCRNLASVYEMQQQIEDRTVRLEKALEQIKQTETQMV 656 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM-GPLNNETYKEY-IGDIHRS 297 ++A+ +L + A + HE+ PLN ++ P E + D+H Sbjct: 657 QQAKMASL--GQLSAGLLHEVNNPLNFATTSIHLLRKRLGNSPHPEPELLEKPLTDLHDG 714 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + + ++++ + + + + + + L + I +Q+ A E + Sbjct: 715 IRRVSSIVSSLREFTHPD----TVRFERVDLRTALNTAIRFVQIPAAEITLVQEL---EG 767 Query: 358 LSSVWADEKGMRQVILNLLSNAV----KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + ++ + V +NLL N+V + G + + R + +DNG GI+ Sbjct: 768 SPMISGNQNQLMHVFINLLQNSVDSLRERGGEGREIRIRCSEVEER-VSLVFEDNGMGIS 826 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 EI V +F K QGVGLGL I I+ H G + S+ E I P Sbjct: 827 PDEIDRVFDAFF----TTKKVGQGVGLGLSICHRIIQQHKGSINVESEAGEWARFIMEFP 882 Query: 474 N 474 Sbjct: 883 V 883 >gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 1032 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPIRLWEAYRHAVGRSS 482 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 651 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 652 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770 Query: 469 IAILPNTRV 477 LP Sbjct: 771 TVALPLREA 779 >gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 513 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 108/456 (23%), Positives = 187/456 (41%), Gaps = 8/456 (1%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 L + RE+ L LF + ++ + L A M Sbjct: 17 RAATSWLSRTGGGEAVRQRELAILRRLVLFSSAALIAAPIGLSAVTSPAVALPAGVAMVC 76 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L +++L ++ ++ I + + G + + + Sbjct: 77 AAFLFSAVGSIALARQGSSAGIATQTAEDFFLDATPGLVFFLDPHGSVATIGGRDRRDFL 136 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + + + A+ I V Sbjct: 137 AWMRDPKGRGFLEQVHVSDRILFLQALDSLRRGEDAECVDLRIDRPSVARDQR------- 189 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + L+ + ++ + ++ + AE N AKSRFLA++ Sbjct: 190 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQNRVADAESANDAKSRFLAAV 249 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFS+++ E G N+ +EY+ + SG HLL+++N +LD+S+IEA Sbjct: 250 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEA 309 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 GRYEL + V+ C ML L+A+ K + + +I L + AD++ ++Q+++NL+ Sbjct: 310 GRYELILEPFDIASSVKSCESMLALQAKTKGLTLTSRIQRGLGEIVADQRAIQQILINLV 369 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+KFT GG V V +++ D G GIA ++ + F Q + Sbjct: 370 GNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 428 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL + + ++A HGG F I S+ EG + + Sbjct: 429 GTGLGLSLVKGLVALHGGHFAIASQPGEGTIITIEI 464 >gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 764 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-V 230 +A +S + T ++ L +S ++++ A+ LE Sbjct: 436 LADGRWLQISERRTKDGGYVSVGTDITALKRHQERLVESERQLIATIADLKRSRRTLELQ 495 Query: 231 AKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+D + +AE N +KS FLA+MSHELRTPLNAILGF+EV++ E G L Sbjct: 496 TQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGC 555 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y+EY DI SGQ+LL++I++ILD+SRIEA R L++ + + +++ + ++ A+ Sbjct: 556 EKYREYCRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAAR 615 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + + +++ + V AD + + Q++LNLL NAVKFT GRV V + +I Sbjct: 616 AKGLTLSVEMNAD-AVVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRR-ALDAVHIY 673 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GI +P + F Q + + +G GLGL IA+S+ HGG+ IRS++ Sbjct: 674 VEDSGIGIPRTVLPKLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHGGRLRIRSEVGS 733 Query: 465 GVEVIAILP 473 G V+ LP Sbjct: 734 GTIVLVRLP 742 >gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 584 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 2/228 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP+ I G++E + + + + + ++ I L L+ ++ Sbjct: 359 RRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPQRAERFLLIIQNHADRLSGLVRDL 417 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS +E+G + ++L + +R+ ++++ R +EK +++ Q + +V AD + Sbjct: 418 LTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRL 477 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NLL NA+K++ G V V G +S++D+G GI E ++P + F + Sbjct: 478 EQVLINLLDNAIKYSETGKSVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVD 536 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 A G GLGL I + I+ HGG ++S+ +G LP R Sbjct: 537 EARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLPLAR 584 >gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] Length = 676 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D I + ++ + R+ AE+ N +S FLA++SHE+RTP+ I+G E+I + Sbjct: 118 DDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL--- 174 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E EY ++ S + LL L+N++LD S++E+G + + +L D V + + ++ + Sbjct: 175 -DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISME 233 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A +K +EI I + ++ D ++QV+LN + NAVKFT G V V+V Sbjct: 234 AHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTET-GYVSVSVKLVFENNS 292 Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D G G+ + + SF QG+ AI G GLGL I+++I+ Sbjct: 293 DDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIIT 352 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GQ I+ + G +P P ++ Sbjct: 353 MMKGQIGIKDNIPRGSVFWFKIPLVPSKKKAPHES 387 >gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] Length = 514 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 156/279 (55%), Gaps = 1/279 (0%) Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 A + ++ L + + E+E+ + AE N AKSRFLA+ Sbjct: 190 AQFIHARMEMTAIRNAAGRLRRVVAQLSDVTEMELLRRDVARKAAEAESANDAKSRFLAA 249 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTPLNA+LGFS+++ E G L N+ +EY+G I +SG HLL+++N +LD+S++E Sbjct: 250 VSHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLE 309 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGRYEL + + + + C ML L+A+EK + + +I + + AD++ +RQV++NL Sbjct: 310 AGRYELMMESFPIGETISSCEAMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINL 369 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 NA+KFT GG V + GR +++ D G GIA +I + F Q Sbjct: 370 AGNAIKFTDAGGVVSIDAAR-EGRMLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRY 428 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL + + ++A HGG F I S+ G V +LP Sbjct: 429 EGTGLGLSLVKGLVALHGGTFAITSQPGAGTVVTIMLPA 467 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 149/346 (43%), Gaps = 37/346 (10%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQ-------AIMSMHVLDISLAGMLATALSFFTYITY 205 + + L + +P+ + + + SM+ L + A L + F Sbjct: 263 FMQSHWLGIHRPVRNWPMYLEIGVTDEVYFGEWMESMYPLMLVAAISLVGLIGGFVLTWR 322 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + L L+ ++ A+ N AKS FLA +SHE+RTP+N Sbjct: 323 QVRRREEDAL------------------LATRLKEEADHANEAKSHFLAMVSHEIRTPMN 364 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ILG SE++ + ++Y IH + L+ +IN+ILD S+IE+G+ +L A Sbjct: 365 GILGLSELLMESGLSS----KQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVA 420 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + +V+E + + Q K+++ +D P SV D ++QV+ NLLSNA+KFT Sbjct: 421 FHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQ 480 Query: 385 IGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 G V +++ + +I D G GI+ + + F Q +I G Sbjct: 481 A-GHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGT 539 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 GLGL I+++++ GG +S E + PE Sbjct: 540 GLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPAPEP 585 >gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 513 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 112/456 (24%), Positives = 190/456 (41%), Gaps = 8/456 (1%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 L + RE+ L L + ++ V L A M Sbjct: 17 RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVC 76 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L +++L ++ ++ I + + + G + + V Sbjct: 77 AAFLFSAVGSIALARQGSSAGIATQSAEDFFLSVTPGLVLFLDPHGSVATVGGRDRRDFL 136 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 + + + A+ A + V Sbjct: 137 AWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQR------- 189 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + L+ + ++ + ++ + AE N AKSRFLA++ Sbjct: 190 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 249 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFS+++ E G N+ +EY+G + SG HLL+++N +LD+S+IEA Sbjct: 250 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 309 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 GRYEL A + VR C ML L+A+ K + + +I L + AD++ ++Q+++NL+ Sbjct: 310 GRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLV 369 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NAVKFT GG V + +++ D G GIA ++ + F Q + Sbjct: 370 GNAVKFTEAGGVVSIDAAAR-DGILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFE 428 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL + + ++A HGG F I S+ EG + + Sbjct: 429 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 464 >gi|34497406|ref|NP_901621.1| two-component sensor [Chromobacterium violaceum ATCC 12472] gi|34330344|gb|AAQ59623.2| probable two-component sensor [Chromobacterium violaceum ATCC 12472] Length = 562 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E ++A+ R +A N AKS FLA+MSHE+RTP+N +LG E++ + + + Sbjct: 6 ITERKMAEFELRMARDQANAANRAKSAFLATMSHEIRTPMNGVLGMLELLAMTRL----D 61 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I S LL LI++ILD S+IEA R E+ + ++ + + A Sbjct: 62 AEQSDTVATIQDSANTLLRLIDDILDFSKIEADRLEIVPTRTAIRPFMDSVRSLYHENAS 121 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 +K +E+ +D L ++ D +RQ++ N +SNA+KFTA G + V V T Q Sbjct: 122 KKGLELTLTLDDKLAPTLVIDPLRVRQILQNFISNAIKFTASGKVDIRVKVMDTVANYQV 181 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++D G G+++ ++ + F Q G GLGL I + + GG + S Sbjct: 182 LSFEVEDTGIGMSQEQLSKLFQPFTQADSETTRRFGGTGLGLAICRRLAGLMGGHVEMES 241 Query: 461 KLREGVEVIAIL 472 + +G +L Sbjct: 242 EQGKGSCARLLL 253 >gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 1809 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1162 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1221 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1222 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1281 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1282 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1341 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1342 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1400 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1401 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1460 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA ++ Sbjct: 1461 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1520 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +F Q G GLGL I++ I GG+ S+ G LP R Sbjct: 1521 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1579 >gi|163813932|ref|ZP_02205326.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759] gi|158450802|gb|EDP27797.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759] Length = 726 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 28/290 (9%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 + +L + + I + +S + + AE L N Sbjct: 303 LVVALLIGLVYWQFAIRHRKEQSYMAEIEKTAENARL--------------------ANE 342 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AK+RFL +MSH++RTP+NAI+GF+++++ + + EY I SG LL++IN+ Sbjct: 343 AKTRFLFNMSHDIRTPMNAIIGFAQLLKDH---ADDKDKVNEYTSKISASGSVLLSIINQ 399 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +L+++RIE+G EL+E +L ++ + + K + + + V DE Sbjct: 400 VLEMARIESGEAELNEEVGNLRELTESIKAVFEPEISRKKLSCDYLVKVTEEFVSYDETK 459 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-----YISIKDNGPGIAEGEIPTVLT 422 +R+++LN++ N+VK+T GG + V V S Q ++ D G G++E +P + Sbjct: 460 VREILLNIIGNSVKYTPDGGNISVRVEQISKGDQGSASYRFTVADTGIGMSEEYLPHIFE 519 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + ++ +G GLGLPI +S++ GG ++SK+ G +L Sbjct: 520 EFTRERTSTETRVEGTGLGLPIVKSLVDMMGGSIDVQSKVGVGTTTTIVL 569 >gi|119471453|ref|ZP_01613894.1| hypothetical tryptophan-rich sensor protein [Alteromonadales bacterium TW-7] gi|119445552|gb|EAW26837.1| hypothetical tryptophan-rich sensor protein [Alteromonadales bacterium TW-7] Length = 903 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 20/321 (6%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 +AL I ++ ML TA+ + LF ++ L ++ Sbjct: 467 LALKENYISQQNIEMSLFLLMLQTAVCLLIIVVLMLFNQ---------QQLALSRQVAER 517 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 S + +K+++ N AKS+FLA+MSHE+RTPLNAI+G S + + + + YI Sbjct: 518 TSSLVKAKKQSDLANSAKSQFLANMSHEIRTPLNAIIGLSSLAKKG----DDAQKLFSYI 573 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ S LLNLIN++LD+S+IE+ L A +V M + A+ KNIE Sbjct: 574 KKIYSSSNSLLNLINDVLDISKIESQHLILESIAFDPKALVTRIDTMFEQSAKNKNIEWI 633 Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKD 407 K + P + D + Q++LNL SNA+KFT G + + + S +S + D Sbjct: 634 LKCNLPVDTWFLGDAMRIEQILLNLCSNAIKFTNEGSVTLDIDTEFVSANKVKLSIAVSD 693 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + T+ +F Q + G GLGL IA+ + GG ++S+L EG Sbjct: 694 TGIGIEKSQHNTLFNAFTQADSSTSRKFGGTGLGLTIAKELCLLMGGTLNLKSELGEGST 753 Query: 468 VIAILPNTRVLNFIPEDNHES 488 + P+ E+ Sbjct: 754 FTF---AVNLTTTEPDIEPEA 771 >gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118] gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118] Length = 621 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + +F++++SHELRTPL ++ + E + + + E++ ++ +I Sbjct: 374 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 431 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355 N++L LSR+++G +L +++ +V + + ++ I I + Sbjct: 432 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFT 491 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NA+K++ GG + + T +SI D G GI + Sbjct: 492 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 550 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ V F + A A+ G GLGL I++ ++ H G+ + S +G LP Sbjct: 551 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 610 Query: 476 RVLNF 480 Sbjct: 611 EYSEE 615 >gi|310659191|ref|YP_003936912.1| sensor protein [Clostridium sticklandii DSM 519] gi|308825969|emb|CBH22007.1| Sensor protein [Clostridium sticklandii] Length = 427 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 6/237 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R + E +S F+A+++HEL+TPL +I GF E ++ +N +++ I Sbjct: 190 ERIKLETI---RSDFVANVTHELKTPLTSINGFVETLKSNAG--INKAMRTKFLDIIEVE 244 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L LI++IL LS IE + S ++ D + ECI ++ ++KN+ I + Sbjct: 245 SNRLQRLIDDILILSFIEGNKSHYSNEPVNFADTINECINLVSETIKDKNVTIDFSPIDN 304 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + ++ M+Q+ILNL+ NA+K++ G V +T+ + S++D+G GI +I Sbjct: 305 QIYLKSNPDLMKQLILNLIDNAIKYSKEEGFVRLTL-LEDSKKVLFSVEDDGIGIPSEDI 363 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + A G GLGL I + I+ N G + S+L +G + I P Sbjct: 364 DRIFERFYRVDKARSKKVGGTGLGLAIVKHIVLNLNGNIKVHSELNKGSKFIIEFPK 420 >gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 752 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 14/253 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LI + + + + +++ EE N KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 509 LINQRKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT----NP 563 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E KE+ I + + LL L+N+ILDLS+IEAG+ + S ++ + R Q R Sbjct: 564 SEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV 623 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 ++ + ++ +I +++++ + QVI N L+NA KFT G + +G+ G Y Sbjct: 624 KD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS---IRMGYKEREDGLY 679 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G GI +P V F + S QG GLGL I Q+I+ N G+ + S+ Sbjct: 680 FYVKDTGKGIERKNLPHVFERFAKFD----SFIQGTGLGLSICQTILDNLHGKIGVESEE 735 Query: 463 REGVEVIAILPNT 475 +G +P Sbjct: 736 GKGSTFWFTIPCA 748 >gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 479 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 21/335 (6%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 T++I+ + + V AL +I++ + A + Sbjct: 159 TVVISNAEEDFLAQTNRWLWISGGLAVAGALLIASILASQISRPLRALNAGARELAAGNL 218 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 ++ + S AE +++A E+ ++ R LA ++HELRTP Sbjct: 219 SHRVKVSANDETGRLAESFNVMAS-------------ALEKSEQSRKRLLADVAHELRTP 265 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L I G + + + T ++ +G I L LI ++ DLS EAG+ +L + Sbjct: 266 LTVINGTVDAMMDGVL-----PTDEQQLGTIKEESLLLTRLIADLRDLSLAEAGQLKLDK 320 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S I L D+V + +L A+ +NI + L SV D + QV+ NLLSNA++ T Sbjct: 321 SVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLPSVNGDWVRLEQVLANLLSNALRHT 380 Query: 384 AIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG V V + S G +++ D G G+ ++ + F + + E G GL Sbjct: 381 PAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPEDLKHIFDRFYRVEDSRSRDEGGAGL 440 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GL I + ++ H G+ + S G LP Sbjct: 441 GLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLPAQ 475 >gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] Length = 616 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 7/235 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL +I ++E + ++ I ++ Sbjct: 372 EKTEQERRDFVSNVSHELRTPLTSIKSYTEALREGAWQDEVIAPQ--FLNVIQLETDRMM 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK----NIEIFQKIDPSL 358 +I +LDLS+I G+Y+L+ I +V + + ++ ++ + Sbjct: 430 RMIGNLLDLSKIHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSRE 489 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D+ + QVI N+L+NA+K++ GG + V + S ++SIKD G GI + +IP Sbjct: 490 IYLEIDQDRVTQVIDNILNNAIKYSPDGGVIVVKIE-DSHSHVHLSIKDQGLGIPQKDIP 548 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A + G GLGL I++ I+ HGG+ S +G LP Sbjct: 549 HLFQRFYRVDKARSREQGGTGLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603 >gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 1804 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 165/412 (40%), Gaps = 47/412 (11%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L E L + T+L + +++ F FL+ ++ S I Sbjct: 1218 GLGEASPAHVIVLPVRFEGTVLGVVELASFQPFTQIQRDFLNQIAEMIGTSVNTISVNTK 1277 Query: 185 LDISLAGMLATALSFFTYITYHLFK-----SNVKILSCQAEKDDLIAEL-EVAKSLSDET 238 ++ L + ++ L +AE EV + +E Sbjct: 1278 TEVLLKQSQELTEQLRERSAELENRQSALQASNAELEDKAELLAQQNRDIEVKNTEIEEA 1337 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R+ EE KS FLA+MSHELRTPLN++L ++++ L+ E+ Sbjct: 1338 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLS-PKQVEFA 1396 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V + EK ++ Sbjct: 1397 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1456 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-------------------VHV 391 ++ P L ++ DE+ + QV+ NLLSNAVKFT G + V Sbjct: 1457 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1516 Query: 392 TVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 S+ D G GIA G++ + +F Q G GLGL I++ I Sbjct: 1517 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1576 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV------------LNFIPEDNHESTQ 490 GG+ S+ G LP + + PE+ + Q Sbjct: 1577 LLGGEIHAASEPGRGSTFTLYLPLRPIELPSSNGQGPGAESPAPEEAAPARQ 1628 >gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] Length = 942 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 106/462 (22%), Positives = 187/462 (40%), Gaps = 42/462 (9%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSD 97 ++L +V + + +V +W L L V Sbjct: 224 LSLFFSIREKVYLLYVCWSAVVTLFMAVLHGYAQRYLWPHSILISQYIIHYLLPLVALLP 283 Query: 98 IKIGEV-----YVWRIWLLVGQIAIGLCWTLLTLVEPG------TWTPEYLTIYKSATLL 146 + + +I IG+ L + + + + L Sbjct: 284 PLLALHFLSLQEKSPRLAVWLRILIGIGTILFLATPFTSRTFLIPISASAILLMDFSIFL 343 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA------GMLATALSFF 200 I L + + F +V A + + L G+ + Sbjct: 344 IGLIRTRAGDPDARIFTLAWFCFIVGAATIALNKYGLIPRNILTENLMQIGVFLEVVLLS 403 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + + +K + +D IAE+E K+ + N AKS FLA+MSHE+ Sbjct: 404 LALARRINR--LKEAHSNSVRDRAIAEMEAFKAGAR---------NHAKSEFLATMSHEI 452 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+N I+G ++++ M + ++Y+G I++S Q LL +IN+ILD S+IE+G+ E Sbjct: 453 RTPMNGIMGMTDLLRRTDM----TQQQEQYVGTIYQSTQSLLRVINDILDYSKIESGKLE 508 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L +I+L +IV +C+ + L + EK + ++ ID + + D ++Q+I NLLSNA Sbjct: 509 LDYRSIALENIVDDCVRLFALHSSEKGLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNA 568 Query: 380 VKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 K T G + + V I + D G G+ EG+ ++ +F ++ K+ Sbjct: 569 FKCTDR-GHIALHVNLKQPPNNKGVCMLMIEVVDTGIGLDEGQQSSLFQAFT--DLSAKT 625 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I + ++ GG+ + S L G LP Sbjct: 626 KHNGAGLGLVICKRLIELLGGEIGVSSSLGRGATFWISLPVE 667 >gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:CHASE3 [Pseudomonas syringae pv. syringae B728a] Length = 1172 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ + A GG + S +G +LP V Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723 >gi|56420908|ref|YP_148226.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380750|dbj|BAD76658.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 468 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 11/342 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT- 204 ++A+ + L L A++L V +T+ + ++ + Sbjct: 130 VMAVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAAAFWPLAAIFAAALLVVGRRMVRQM 189 Query: 205 ----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMS 257 + ++ ++ + E D + + L++ + A+ E+ K FLA++S Sbjct: 190 TEPLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVS 249 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPL+ + G+SE + E K Y+ IHR + + L+ ++LDL+R+E Sbjct: 250 HELRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQ 307 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 L + ++ ++ + I + A +K IE+ ++D + V D + QV+ NLL Sbjct: 308 SVPLERAPVAFAQVIEDVIATYEPIASQKRIELACELDYDII-VNGDADRLEQVVRNLLD 366 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+++T GG V V + S + I+D G GI + ++P + F + A E G Sbjct: 367 NAIRYTPEGGAVTVRLSRLSEAEGELVIQDTGKGIPKDQLPLLGQRFFRVDRARTRKEGG 426 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I + I++ H G S L G+ V LP R Sbjct: 427 TGLGLAIVKQIVSLHDGAIWFDSDLGRGMTVFVRLPLVREEE 468 >gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 756 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 9/255 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + E R AEE K FLA+MSHE RTP+N ++G +++++ + Sbjct: 352 ERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDL-- 409 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + Y I S + LL LIN++LDLS + A L L V + + +L Sbjct: 410 --SEDQRLYTDTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSG 467 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A EK++E+ +IDP + V D++ +RQ+++NLL NAVKFT G + + + Sbjct: 468 QADEKHLELSVEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFT-TSGSIFIRLRGVVTGD 526 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 Q I ++D G GI ++ + F Q AI G GLGL I++ + GG Sbjct: 527 QVALKIEVEDTGIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDID 586 Query: 458 IRSKLREGVEVIAIL 472 + S EG +L Sbjct: 587 VTSVEGEGACFTLML 601 >gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] Length = 894 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 167/310 (53%), Gaps = 10/310 (3%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-----SCQAEKDDLI-----A 226 + + D + T + + F + + + K LI Sbjct: 580 TFGLPPELADPAFTDFPMTREVWSSRRGRRWFSFDRRTVFNAQGESGGTKLALICLYDVT 639 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + A+ R++A + +F+A+ SHELRTPLNAI+GFSE+I+++T GP+ + Sbjct: 640 AYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQTFGPVGDTR 699 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 Y+EY DI +G+HLL+LIN+IL L R++ G +++ + L D +R+ + M++ +A+ + Sbjct: 700 YQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMVEDQARAR 759 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +I + + P + + + +RQ++LNLLSNAVKFT GG+V V +G G ++ I Sbjct: 760 SIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGHDGEDLWLEIS 819 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GIAE ++ V F + + +G GLGL I +++M HGG+ +RS+ +G Sbjct: 820 DTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAHGGRVSLRSRYGQGT 879 Query: 467 EVIAILPNTR 476 + LP+ R Sbjct: 880 TLRITLPSWR 889 >gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112] Length = 927 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] Length = 1207 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 8/258 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + D+ + K AE+ N AKS FL+ MSHE+RTP+NAI+G + I + Sbjct: 647 RTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMNAIIGMT-AIAAQ 705 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 +G N+E + I I S + LL+LIN+ILD+SRIE+G+ L I + + Sbjct: 706 ALG--NDEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDKIPTEEFLNGINS 763 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV--- 393 + +A K++E +DP L + D ++QV++N+L NA+KFT GG+V + Sbjct: 764 ICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTREGGKVTFSAAVK 823 Query: 394 -GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + I D G G+ E +P + F Q S S G GLGL I++SI+ Sbjct: 824 RKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGLGLAISKSIVDLM 883 Query: 453 GGQFLIRSKLREGVEVIA 470 G+ +RS G E Sbjct: 884 DGKITVRSIKGLGTEFTV 901 >gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 1763 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 165/412 (40%), Gaps = 47/412 (11%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L E L + T+L + +++ F FL+ ++ S I Sbjct: 1177 GLGEASPAHVIVLPVRFEGTVLGVVELASFQPFTQIQRDFLNQIAEMIGTSVNTISVNTK 1236 Query: 185 LDISLAGMLATALSFFTYITYHLFK-----SNVKILSCQAEKDDLIAEL-EVAKSLSDET 238 ++ L + ++ L +AE EV + +E Sbjct: 1237 TEVLLKQSQELTEQLRERSAELENRQSALQASNAELEDKAELLAQQNRDIEVKNTEIEEA 1296 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R+ EE KS FLA+MSHELRTPLN++L ++++ L+ E+ Sbjct: 1297 RQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLS-PKQVEFA 1355 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V + EK ++ Sbjct: 1356 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1415 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-------------------VHV 391 ++ P L ++ DE+ + QV+ NLLSNAVKFT G + V Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1475 Query: 392 TVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 S+ D G GIA G++ + +F Q G GLGL I++ I Sbjct: 1476 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRV------------LNFIPEDNHESTQ 490 GG+ S+ G LP + + PE+ + Q Sbjct: 1536 LLGGEIHAASEPGRGSTFTLYLPLRPIELPSSNGQGPGAESPAPEEAAPARQ 1587 >gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 779 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 12/293 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDL----IAELEVAKSLSDET------RKRAEEENLAK 249 T I H K L +A DL + A L+D + RAE+ N AK Sbjct: 478 ITRIKEHEQKLVENDLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRAEDANRAK 537 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S+FLA+MSHELRTPLNAI+GFSE++ G L + Y EY DI SGQ+LL +IN++L Sbjct: 538 SKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVINDVL 597 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+S+IEAGR L + L ++ E + ++ R +K + + D + S+ AD + ++ Sbjct: 598 DMSKIEAGRTNLDMETLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRRAVK 656 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+++NLLSNAVKFT GR+ ++I D G GIA + + F Q Sbjct: 657 QIMVNLLSNAVKFTPASGRIMAR-SKVFENSVTLTIADTGIGIAPHALRRLGKPFEQVES 715 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 + G GLGL IA+S++ H G IRSK G V LP R P Sbjct: 716 QLTKTHAGSGLGLAIAKSLVNLHSGSMRIRSKPGAGTVVRVTLPRHRQARRRP 768 >gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 614 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 4/236 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R E + KS F+ + SHELRTPL +I ++++ + L++ ++ + Q Sbjct: 383 RLRELDRLKSEFVMTASHELRTPLTSIGMSIDLLKDKAGSKLSDRE-RQLLTVAQEDVQR 441 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+NE+LDLS+IEAG+ E+ + L I + ++ +A++ +E+ D L Sbjct: 442 LKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGLPE 501 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + V++NL+ NA++ T G V V +GR ++S+ D+G GI + Sbjct: 502 VRVDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIPLEFQTKI 560 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q S+ G GLGL I + I+ HGG + S +G +P Sbjct: 561 FDKFVQVKSRRTSS--GTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVPIAE 614 >gi|317151836|ref|YP_004119884.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942087|gb|ADU61138.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 533 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 19/274 (6%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 KS K+ E + EL + K+A+ AKS FLA+MSHE+RTPLNA+L Sbjct: 258 KSEDKVRRRTRELERANEELTSKSARLVAAMKKADAATRAKSAFLANMSHEIRTPLNAVL 317 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G +E+ + E + + +G LL +IN+ILD S+IEA + L L Sbjct: 318 GMAELALR----VQDEARKNECLERVLEAGTSLLTVINDILDFSKIEARKLTLERIDFDL 373 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 DI+R + M +L A +K + + ++ + V D +RQV++NL++NAVKFT GG Sbjct: 374 RDILRTALDMHRLHATDKGLGLTAEVGDDVPEAVLGDPGRLRQVLVNLVANAVKFTDAGG 433 Query: 388 RVHVTVGWTSGR-------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 V V +G + + D G GI + + + SF Q +I Sbjct: 434 -VTVRIGLAPDQPADLSGLAPGQPLRLRFEVADTGIGIPKRKRRAIFKSFLQADDSITRK 492 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GLGL I + ++ G + S EG Sbjct: 493 HGGTGLGLAICKLLVELMHGSLDVESVEGEGSTF 526 >gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 2607 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 131/242 (54%), Gaps = 2/242 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AK +F++ +SHELRTPL AI G+ +V+ L L ++ Y+G I + L Sbjct: 2367 EADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTSDQV-SYLGIIKNNTNRLKA 2425 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LI +IL+ SR +A + +L+ + +S+ +++ E + L+L Q K++ + L +V A Sbjct: 2426 LIEDILEFSRPDASK-KLNFTRLSIPEVIDEVVSSLRLEYQRKDMSVEVDAPHDLPTVMA 2484 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D+K + QV+ NL SNAVK+T GG +HV + ++D G G++ + + Sbjct: 2485 DQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVDVEDTGVGMSPEQRKKLFRP 2544 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + ++ G GLGL IA++++ HGG+ + S++ +G ILP + E Sbjct: 2545 FYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGKGSTFSFILPLQQTDVNQEE 2604 Query: 484 DN 485 D Sbjct: 2605 DA 2606 >gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 2100 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 166/392 (42%), Gaps = 24/392 (6%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 +LV + + + + L ++ + + +++ F FL Sbjct: 1277 ARRILVTDLPENVVPISSGVFTTLPRSAIVLPVHFEGQVKAVIELASAGEFTELQLSFLD 1336 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + + +I + + L A + L ++N ++ + ++ Sbjct: 1337 QLTTSIGIVLNSIEATMQTEGLLKQSQQLA-AELQTQQRELQQTNEQLGQKAQQLEERNV 1395 Query: 227 ELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+E ++ R+ EE + KS FLA+MSHELRTPLN+IL + + Sbjct: 1396 EVEAKNQEIEQARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPD 1455 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L+ + E+ IH +G LLNLI++ILDLS+IE+G + I + +++ Sbjct: 1456 GNLSGKQV-EFAKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVNNLLEVMARPF 1514 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A+ +N+ ++ ++ + D K ++Q++ NLLSNA KFTA GG V + V + Sbjct: 1515 RHEAETRNLSFAVEVGADVAKSIITDSKRLQQILKNLLSNAFKFTAQGG-VTLRVASATS 1573 Query: 399 RG-------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + D G GI + + +F Q + G GLGL I+ Sbjct: 1574 GWSSDHPSLRHAPSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAIS 1633 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + + GG+ +RS G + LP T V Sbjct: 1634 RELANLLGGEIQLRSTPGVGSTFVLYLPLTYV 1665 >gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 647 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + FLA+MSHE+RTP+N+I+G ++++ + + KEY+ I S + LL +IN+IL Sbjct: 179 TEFLANMSHEIRTPMNSIIGMTQLLAYTEL----SAEQKEYVEGILTSSEGLLAIINDIL 234 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 DLS++EAG+ EL SL + E I A EK +++ I + +V D + Sbjct: 235 DLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRL 294 Query: 369 RQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFG 425 +QV+LN++ NA+KFTA G V V + I S+ D G GIA + + F Sbjct: 295 KQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFA 354 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + G GLGL I+ ++ GG+ S+ G +P Sbjct: 355 QEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAESRKNAGSTFHFEIPFR 404 >gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 1027 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 10/295 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + S + + Q+ L ++ + A N +KS F+ Sbjct: 465 TVIAPSVAALIRDITASRMNEIKIQSMNQSLELQVAERTQELKHATELAIAANQSKSAFV 524 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A++SHE+RTPLN I G E+++ E + ++ Y+ S L LIN++LDLS+ Sbjct: 525 ANISHEIRTPLNGIAGMMELLQREDL----SDKQLNYLKMAKSSVSTLTVLINDLLDLSK 580 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVI 372 IE+G+ ++ +LI+ + I + LR EK +E+ + +D ++QV+ Sbjct: 581 IESGKLDIELVQFNLIETMSSVINSMALRCDEKGLELLFDWTQIQHEELISDAYRIKQVL 640 Query: 373 LNLLSNAVKFTAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +NL+ NA+KFTA G++ V+ + I D G G+ + + F Q Sbjct: 641 VNLIGNAIKFTAQ-GQIVVSAKTYAAAQEQIWLEVVITDTGIGLTPEQQAKLFRPFTQAH 699 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 I G GLGL I+Q ++ GG+ I S + +G + R+ P+ Sbjct: 700 ANIAKNFGGTGLGLSISQQLVQLLGGEITIHSVVEQGSTFTFTVCTERIKIEEPK 754 >gi|298245460|ref|ZP_06969266.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552941|gb|EFH86806.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 408 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 89/398 (22%), Positives = 168/398 (42%), Gaps = 19/398 (4%) Query: 86 NLSLGKKVMNSDIKIGEVYVWRIW---LLVGQIAIGL-CWTLLTLVEPGTWTPEYLTIYK 141 ++ ++ + +WR L+ + +GL W L Y Sbjct: 22 RMTFEQRAELRRNFTASLPLWRHPLIGYLLSILLVGLFGWGQQALDGWIGGGGIYFAGSL 81 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM-LATALSFF 200 ++ ++ + L + + + + +S + L + + Sbjct: 82 LLLPVLFIATFWGTMPSLFTVLLGALYIDYFFIGYNQGISWQHWEDGLRILPFFISGITI 141 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 IT ++ + L + E + AELEV+ ++ E+ N K RFL+ SHEL Sbjct: 142 AIITAQRERARWQTLIAEQELKEYAAELEVSN-------QKLEDANQTKDRFLSIASHEL 194 Query: 261 RTPLNAILGFSEVIELET---MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 +TP+ I G +++ G +N + I+ L LI E+LD+S + G Sbjct: 195 KTPITTIRGQAQLALRRLAKQDGEMNVSDMHTALERINEQTVRLTTLIEELLDVSSLRTG 254 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + L++ +++ ++ ++ + +L I K+ P V D + QV++NL+ Sbjct: 255 KTALNKRKLNINELCQQVVDDQKLL---TGRHIELKLPPKEVMVSVDRDRIEQVLINLVG 311 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVK++ G V + V R I ++D+G GIA ++ V +F + A S ++G Sbjct: 312 NAVKYSPEGSVVQICVERKW-RKALIHVRDHGKGIAPDQLEKVFDTFYRTPDAEASTKKG 370 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +GLGL I++ I+ H G+ S+L +G E LP Sbjct: 371 LGLGLSISKEIIERHEGRIWCESQLGQGSEFFVELPLK 408 >gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1751 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 15/257 (5%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELE----TMGPLNNETYK---------EY 290 E + K+ FLA++SHELRTPL ++LGF+ +I+ + ++++ + + Sbjct: 1496 EVDRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQN 1555 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I I + L LIN++LD++++EAGR E + + S+++I+ +K I++ Sbjct: 1556 IKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTSVVEILETASAATYPLFDKKKIDL 1615 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + +L ++W D+ M QV++NLLSNAVKFT G ISI D G Sbjct: 1616 IKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGSVTC--CAKLEDDQLVISITDTGI 1673 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIAE E + F QG + G GLGLPI + I+ HGG+ + S +G Sbjct: 1674 GIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTFFF 1733 Query: 471 ILPNTRVLNFIPEDNHE 487 LP + + E ++E Sbjct: 1734 SLPLSGQEHEPLEKSNE 1750 >gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 14] Length = 927 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 260 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 317 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 318 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 377 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 378 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 431 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 547 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 LP Sbjct: 666 TVALPLREA 674 >gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 927 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 150/336 (44%), Gaps = 4/336 (1%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 L+ + A+ V A + A L + + Sbjct: 585 LAYARRRGVGSLEALPADADLVHFAETQLAGAIGGASARVLVASVVQEEPLGLDEVMDIL 644 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + E + LE A + + +E + K F++S++HELRTPL +I Sbjct: 645 DEASQVRAYSRELEQKSRALETASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIR 704 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 FSE++ + P+ ++ I + + L LI+++LD+++IE+G E + + + Sbjct: 705 AFSEILRDDPKAPI--AERVRFLAIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDV 762 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + +++ + ++ +E+ + P+ V AD + QVI+NLLSNAVKF GGR Sbjct: 763 REAIQDSVEATSQLFRDSGVELAVALQPA-PRVRADRDRLVQVIMNLLSNAVKFCPRGGR 821 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 V V + + ++D+GPGI+ + + F Q S + +G GLGLPI++ I Sbjct: 822 VEVRLAPAPEG-VRVDVQDDGPGISPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRI 880 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + + GG+ + S+L G +LP E Sbjct: 881 VEHFGGRLWVESELGRGATFSFVLPLDAAAQAAEEP 916 >gi|77359088|ref|YP_338663.1| hypothetical protein PSHAa0111 [Pseudoalteromonas haloplanktis TAC125] gi|76873999|emb|CAI85220.1| putative membrane bound sensor or esterase [Pseudoalteromonas haloplanktis TAC125] Length = 942 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 14/297 (4%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 L I L + L I +SN K L ++E + Sbjct: 419 RSQLTILLGIVAILILITVIAIYRRRIESNA--------KLQLTEQVEQRTLELQSVAQE 470 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E N KS+FLA++SHE+RTPL AIL ++ + P E ++ + I R +HL Sbjct: 471 LREANDVKSQFLANISHEIRTPLTAILSQTDDLINGLYDP---EQLQDELKVIQRQSEHL 527 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSS 360 +LIN++LDLS+IEA R ELS S ++ ++ + M ++A+ KN+ + Sbjct: 528 KSLINDVLDLSKIEANRLELSISCFDIVQVLNDIHGMFSVQAKAKNLSLVFDNQLGDELY 587 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 D ++Q+++NL +NA+KFT G+V + V + +G +++KD G G+ ++ + Sbjct: 588 TRLDLTRVKQILINLCANAIKFTHS-GQVTI-VANNTEQGLVLTVKDTGIGMNTAQLKLI 645 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F Q +I G GLGL ++Q + A GG ++S+ ++G + +P V Sbjct: 646 FECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSQFSFFVPCVPV 702 >gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 463 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 13/308 (4%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 ++++L + + + ++L + + T + + + + D++ Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKAMAQGRFDVRVSKRYDDEIGEL 227 Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + ++ E ++ K+ F+AS+SHELRTPL +I+G+ I + + E Sbjct: 228 GDTLNYMAQEVANQQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 KE + I R + L L++E+LD S+ +AG L +S ++L ++++ ++ RA+ K Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I + +D L + ADE ++QV +N++ N+ KFT GG + + +G + G I I+ Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI E ++P V F +GS + G GLGL I I+ H G+ I S + +G Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455 Query: 467 EVIAILPN 474 V ILP Sbjct: 456 RVDVILPV 463 >gi|158333298|ref|YP_001514470.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303539|gb|ABW25156.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 1575 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 34/325 (10%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 F + +A + ++ L LA + L + + + +L+ Sbjct: 1026 GFLQLPIAEQNDMLRRWTADEVELIEALANQVGIALAHAKLLEQEKQQSHKLSEQNHELL 1085 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ AE N AKS FLA+MSHELRTPLN ILG++++++ + Sbjct: 1086 V-----------AKREAEFANQAKSEFLANMSHELRTPLNGILGYAQILQR---SASLSP 1131 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I +H+ GQHLL LI ++LDLS+IEA R EL + + + + ++AQ+ Sbjct: 1132 KDHKGIQVMHQCGQHLLTLIEDLLDLSKIEAQRMELHPDSFHFHEFLTGISELCTIKAQQ 1191 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------ 398 K +E+ + +L ++ADE+ +RQ++LN+L NAVKFT G V V Sbjct: 1192 KGLELITQFASNLPQGIYADEQRLRQILLNILGNAVKFTDS-GNVTFKVAIAPDPLPPIS 1250 Query: 399 -----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + D G GI E+ + F Q QG GLGL I+ + Sbjct: 1251 QKDDLPHGETIQSIVFQVSDTGIGIVAQELSKIFLPFEQAGHPD-RYHQGTGLGLAISHN 1309 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + A GG+ + S+ EG L Sbjct: 1310 LTAMMGGKLSVISQPNEGSVFSFTL 1334 >gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 380 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 150/356 (42%), Gaps = 8/356 (2%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 T ++ + + + ++ + + +A A+++ Sbjct: 29 ATATSFSVPAAFERHMAGMSAMMPGMMGNSHSMEMELFANYRASVTEALSLA-VITALIA 87 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 V ++ + + +++ + + K + + EL+ ++ + Sbjct: 88 AVVASYFISRQVVNPIRTMMNLSHRIAEGEYKERLTISGDLSQLDELDQLALSFNQMADK 147 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E+ + + + ++HELRTPL AI G+ E + + N + IH L Sbjct: 148 LEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQ-----IHDEINRL 202 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L++++ +LSR+E+G + L +SL D++ + + K I+ +I+P+L V Sbjct: 203 QRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEPNLPPV 262 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D+ + QV+ NL+ NA+++T GG+V V + IS+ D G GI+ +P + Sbjct: 263 LIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQR-TEILISVSDTGIGISPEHLPFIF 321 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTR 476 F + + A G G+GL IAQ+++ H G+ S +G LP + Sbjct: 322 NRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEGKGSTFYFTLPIPK 377 >gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 538 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 119/249 (47%), Gaps = 8/249 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E RAE N KS+FLA+MSHELRTP N +LG ++E + Sbjct: 112 EDLTHELREAHFRAEAANRGKSQFLANMSHELRTPFNGMLGMMSLLESTPLTT----AQT 167 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +YI S HLL L+N+ILD+S +E+G+ L+ + L ++ E ++ A EK + Sbjct: 168 DYIKTAKGSANHLLTLLNDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQL 227 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYIS 404 + + L V AD ++Q++ NL++NA+KFT GG + G Sbjct: 228 KFSIVVQAELPAWVLADATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFL 287 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G G+ + + + F Q + G GLGL I+Q++ GG + S L + Sbjct: 288 VEDTGIGMDDHVLSRLFQRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVESTLGK 347 Query: 465 GVEVIAILP 473 G LP Sbjct: 348 GSVFTLHLP 356 >gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 815 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 100/232 (43%), Positives = 143/232 (61%), Gaps = 1/232 (0%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N AK+ FLA+MSHELRTPLNAI+GFSE+IE E +GP+ + Y++Y DI+ SG+HLL L Sbjct: 575 SNRAKTEFLATMSHELRTPLNAIIGFSEIIENELLGPVETKQYRDYAHDINESGRHLLTL 634 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN+ILD++R+E GR+ L ES + + +R + ++ RA+ + I ++I L + D Sbjct: 635 INDILDVARLEVGRFALMESEMDVGQTIRASVQLVGERAKAAGLRIGEQIPDGLPWLMGD 694 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 E+ ++Q I N+LSNAVKFT+ GRV VT T G I + D G GI ++ ++ F Sbjct: 695 ERRIKQTIANILSNAVKFTSADGRVTVTAK-TDENGLDIVVSDTGIGIHADDMTKIMAPF 753 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GQ ++ G GLGLP+A+ M HGG I S +G V P +R Sbjct: 754 GQAESSLSRRFDGAGLGLPLARRFMDMHGGTLSISSTPGQGTVVNLHFPASR 805 >gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] Length = 1014 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10] Length = 598 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 6/235 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E ++ F+++++HEL+TPL +I GF E ++ + +++ I + Sbjct: 370 RKLE---QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVAV--KFLDIIDIEAE 424 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+ L LS IEA R + S I LI I+ E +++L+ A +KNI + + + Sbjct: 425 RLYMLINDTLQLSEIEAMRKDDSVMKIDLIQIIDEVVLILKSSADKKNIALEVLANSAEV 484 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V A+ ++Q+++NL+ NA+K+ G++++ + IS+KD G GI E Sbjct: 485 PVIANRNRIKQMLINLIDNAIKYNVENGKIYIK-SEKANGNTVISVKDTGIGIPEKHHSR 543 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + G GLGL I + I+ + G I S+ +G E I LP Sbjct: 544 IFERFYRVDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLPL 598 >gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1549 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 38/387 (9%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH- 183 L E + + LL + ++ S+F FL+ + ++ I Sbjct: 962 GLGESSPAHVVVMPVLFEGRLLGVIELATFSSFTTVALDFLNQIADQIGVTVNTISVNTK 1021 Query: 184 -----VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + L L+ + L ++N ++ + ++E+ S ++ Sbjct: 1022 TEGLLLESQRLTAELSMRSAELEARQEELERTNEELQEKAEQLAQQNRDIEIKNSEIEDA 1081 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R+ EE + KS FLA+MSHELRTPLN++L ++++ G L+ E+ Sbjct: 1082 RQILEERAEQLSQASRYKSEFLANMSHELRTPLNSLLILAKLLSDNNEGNLS-AKQVEFA 1140 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 IH +G LL LIN+ILDLS++EAG+ ++ + I+L+ +V + A +KN++ Sbjct: 1141 ETIHGAGSDLLQLINDILDLSKVEAGKMDVRPARIALVQLVDYVEAAFRPLAADKNLDFA 1200 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--------- 401 ++ P L ++ DE+ ++QV+ NLLSNAVKFT G V + + +G Sbjct: 1201 VRVSPELPPTLHTDEQRLQQVLRNLLSNAVKFT-DNGAVELMIRPVAGPEIPQHVREQLL 1259 Query: 402 -------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 S+ D G GI ++ + +F Q G GLGL I++ I Sbjct: 1260 ESGTMADPDEPLIAFSVADTGIGIPGDKLREIFEAFKQADGGTSRKYGGTGLGLSISREI 1319 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475 GG+ + S++ G LP Sbjct: 1320 ARLLGGEIHVESQIGSGSAFTLYLPLR 1346 >gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] Length = 1576 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 14/258 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + + AE+ AKS FLA+ SHE+RTPLNAILG + ++ E++ E+ + Sbjct: 815 EQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHRLV 870 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG+ LL ++N++LDLS+IEA L + L + + E + +A+ KN++ Sbjct: 871 DKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFK 930 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT--------SGRGQY 402 ++ L V AD +RQ++ NLLSNA+KFT++ G + + Sbjct: 931 LEMGADLPHWVIADSMRLRQILTNLLSNALKFTSV-GHIALHAEVIDKFIWKGAEKNIVR 989 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 SI D G GI+E + F Q + G GLGL I ++ G+ + S Sbjct: 990 FSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1049 Query: 463 REGVEVIAILPNTRVLNF 480 +G +P + + Sbjct: 1050 GQGSTFWTEMPLQTLSDE 1067 >gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41] gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41] Length = 561 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +S F+A++SHELRTP+ + G+SE + + + E E I+ + + Sbjct: 332 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDQEERNEITKIIYDESKRMGR 390 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362 L+ ++LDL+R+E+G L + + + A+EK++ + + + + Sbjct: 391 LVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFDSEFNDDAMIN 450 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ NL+ NA++ T G V V V IS++D G GI + ++P V Sbjct: 451 IDEDRIEQVLTNLVDNALRHTDE-GSVTVKVEKEP-TFAKISVQDTGHGIPQDDLPYVFE 508 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A ++ G GLGL IA++I+ H G ++ S L+EG LP Sbjct: 509 RFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559 >gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 300 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L E + + +E + K+ F+A+MSHE+RTPLNAI+GF+ ++ T N Sbjct: 40 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 93 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+++ LL LIN+ILDLS+IE+GR + S + L DI +E ++ L+ Sbjct: 94 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 153 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + +W D + QV+LNLLSNA+KFT+ G + + + Sbjct: 154 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 211 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E ++ +V F + QG GLGLPI + I+ GG+ +RS+L Sbjct: 212 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 267 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G LP + E + S +C Sbjct: 268 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 297 >gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 590 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 6/233 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP+ + G+SE I + + E KE I+ + Sbjct: 360 RLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AESEEEKKEIAKIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP---SLSS 360 L+N++LDL+R+EAG L + + + Q A+EKNI + + Sbjct: 418 LVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGHKTGLNSQQ 477 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++ D + QV+ NL+ NA++ T G V V T + + D+G GI E ++P V Sbjct: 478 IYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSG-ILVEVSDSGSGIPEEDLPFV 536 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A + G GLGL IA++I+ +H GQ + SK+ +G LP Sbjct: 537 FERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589 >gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] Length = 505 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 215 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 274 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N KEY + + LL L Sbjct: 275 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 331 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 332 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 390 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 391 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 450 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 451 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 499 >gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] Length = 2379 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%) Query: 226 AELEVAKSLSDETRKRA-----------------EEENLAKSRFLASMSHELRTPLNAIL 268 A LE+ K + R+ EE AKS FLA++SHELRTPLN ++ Sbjct: 1850 AMLEMQKRALAQAREAEVKAKEAEAKAVANMKLKEEAARAKSLFLANVSHELRTPLNGVI 1909 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G SE+++ + N Y I LL++IN++LD S++EAG+ + E ISL Sbjct: 1910 GMSELLKASPL----NGEQTGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISL 1965 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + + E + L E+ ++ ++++ + V AD + Q+++NLLSN+ KFT G Sbjct: 1966 NETIAEVVRALAYTNAERGLKTIEQLELNPEMLVMADPVRLHQILMNLLSNSYKFTPR-G 2024 Query: 388 RVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V V ++ S+ D G GI + + + F Q + + G GLGL Sbjct: 2025 SVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQKQKLFLPFSQIESSSTRSYGGTGLGLS 2084 Query: 444 IAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 I ++++ N G + S+ +G V L +V + T Sbjct: 2085 ICKALIENVMHGTVRLESQPGQGTTVTFSLRFKKVPKAQAGAQQQRT 2131 >gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654 >gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 797 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 141/360 (39%), Gaps = 21/360 (5%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + P + ++ A L+A + L L +V + + Q Sbjct: 149 LRPMWTDTWHRLLWVLAGTLVAFGGALLLATRLQRSVSEPIIELTSVMR-QVAQDSDYSR 207 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 L + + + + L ++ + +++AE N Sbjct: 208 RLRIDRRDEVGELVRGFNSMLHEVAARDEQLREHRATLEDQVTSRTAQLQLAKEQAETAN 267 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 LAKSRFLA+MSHE+RTP+N ++G ++++ + +E + + + S + LL+L+N Sbjct: 268 LAKSRFLANMSHEIRTPMNGVIGMADLLLDTGL----SEQQRRHAETLRLSAESLLHLLN 323 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ILDLS+IE+GR ++ + +V E + A K + + I P + V D Sbjct: 324 NILDLSKIESGRLDIELTPFDPRRLVEEVMQPFVEMASAKGVLLGDVISPDIPPVVIGDP 383 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--------------GQYISIKDNGPG 411 ++Q++ NLLSNAVKFT G + +++ ++ D G G Sbjct: 384 YRVKQILSNLLSNAVKFT-EHGSIFISLSQEPTGADRDSAPAADGTHCQLCYAVTDTGVG 442 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+ + F Q + G GLGL I + + G S G Sbjct: 443 ISRAASEKLFAPFTQADDSTTRKFGGTGLGLVIIRELAQRMDGHVGFESAEGLGSTFWFR 502 >gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 503 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 188/458 (41%), Gaps = 12/458 (2%) Query: 17 SPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS 76 L + RE+ L L + ++ + L A M Sbjct: 7 RAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVALPAGVAMVC 66 Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT--WTP 134 L +++L ++ + I + L+ ++P T Sbjct: 67 AAFLFSAVGSIALARQGSAAGIATQSAE---------DFFLAATPGLVFFLDPHGSVATI 117 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 + + L + + S+ + + Sbjct: 118 GGRDRRDFLGWMRDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRD 177 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + + + L+ + ++ + + + AE N AKSRFLA Sbjct: 178 QRQFAYLRMDMTARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLA 237 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHELRTPLNAILGFS+++ E G N+ +EY+G + SG HLL+++N +LD+S+I Sbjct: 238 AVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKI 297 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAGRYEL A + V+ C ML L+A+ K + + +I L V AD++ ++Q+++N Sbjct: 298 EAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRDLGEVVADQRAIQQILIN 357 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+KFT GG V V +++ D G GI ++ + F Q Sbjct: 358 LVGNAIKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRR 416 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL + + ++A HGG F I S+ EG + + Sbjct: 417 FEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEI 454 >gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 660 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFNYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654 >gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855] gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855] Length = 494 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ R +AE+ + KS FLA+MSHE+RTPLNAI+GFS ++ E ++ Sbjct: 249 IQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSE---EMDG 305 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E KE++ I+++ + LL LI++I+D+S+IE+ E SL I+ E Q Sbjct: 306 EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQ-CQSLNI 364 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 IE ++ + + D +QVI NL++NA+KFT G + + I Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMY-GHITLGSKILQNGTIDIY 423 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G G+ + ++ + F + S + G GLGL I ++I+ + G+ + S + Sbjct: 424 VKDTGMGMPQEKLAHIFERFYKMD----SFKPGAGLGLSICKTIIEHMQGEINVTSIEGK 479 Query: 465 GVEVIAILP 473 G +P Sbjct: 480 GSNFTITIP 488 >gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1965 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 5/286 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G L LSF + + V +L +E+ + E + ++ + N K Sbjct: 1534 GQLLGTLSFASLTRTQFTPAEVNLLQAISEQVAIALERAELVASLEQQTEDLARANRVKD 1593 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA +SHELR+PLN ILG++++++ ++ P + + + I R+ + LI ++LD Sbjct: 1594 EFLAVLSHELRSPLNPILGWTKLLQSQSFSP---DKAAKALATIERNAKLQAQLIEDLLD 1650 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +SRI G+ L+ ++++L ++ + ++L A+ K I++ ++P + + D ++Q Sbjct: 1651 VSRILQGKMVLNVTSVNLGSVIEAALETVRLAAEAKAIQLETLMEPEIDPILGDPARLQQ 1710 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NLL+NAVKFT GG+V V + + ++D G GI+ +P V F Q Sbjct: 1711 IVWNLLTNAVKFTPQGGQVTVRLQRV-DTFAQLQVQDTGKGISPAFLPHVFDYFRQEDGT 1769 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 G+GLGL I + + HGG S G LP Sbjct: 1770 TTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIRLPLQ 1815 >gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 866 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 8/233 (3%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA MSHE+RTP+N I+ + ++ + ++++ + SG L+ ++N Sbjct: 368 RTKSEFLAMMSHEIRTPMNGIIVMARLLLDTDLTA----EQRDWLEIVTSSGDTLMTVLN 423 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 +ILD S++E+G+ ++ E L ++ + +++ RA+EK + I + + AD Sbjct: 424 DILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGLSISVHYGAGVPGVIRADP 483 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 +RQV+LNL+ NA+KFT +GG + + V G +++D G GI + + Sbjct: 484 TRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFAVRDTGIGIPAEALTRLFA 543 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +F Q +I G GLGL I Q ++ GG + S G LP + Sbjct: 544 AFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGYGTTFTFTLPVS 596 >gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 820 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 13/306 (4%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL-- 234 + IS +G LS + + ++ L A + + E A + Sbjct: 379 GFFSAQSTPLISRSGQFIGLLSTHWRKYHRPSERELRFLDLLARQATDLIEQRQAFAEHQ 438 Query: 235 -----SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 RK AE+ N K FLA +SHELR+PLN ILG+S +++ + ++ T ++ Sbjct: 439 HLLEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKF---DSATTQK 495 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I R+ + LI+++LD++RI G+ +L E+ ++L+ ++ E I +++ A+ K+I Sbjct: 496 GLSTIERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIA 555 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + S V DE + QV+ NLLSNAVKFT GG+V V + + I++ D G Sbjct: 556 LRFNLIDS-CQVRGDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQ-ACITVVDTG 613 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468 GI +P + +F Q I+I G+GLGL I + ++ HGG S +G Sbjct: 614 KGIKPEFLPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEGQGATF 673 Query: 469 IAILPN 474 P Sbjct: 674 TVQFPL 679 >gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] Length = 1014 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU144] Length = 565 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE + EL + ++L ++ I LQ +A K I+I +I+ + + Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ +++ +V V V + Y+ I+D G GI+E + + Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ ++S+ +G + Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562 >gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1] gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1] Length = 761 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R A++ + AK FL++MSHE+RTPLNAILGF ++ E + ++ ++ Y+ Sbjct: 141 QKLIDARLEADKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDEDV----SKKHRTYLD 196 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I SG++LL++IN+ILD S++ +G + + SL D + + + A K+I I Sbjct: 197 IILNSGENLLSIINDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDITITS 256 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 IDP + ++AD ++Q++ N LSNA+KFT GG + V +S+ D+G G Sbjct: 257 FIDPHIPKELYADALRIKQILSNFLSNAIKFTPNGGHISVEAAC-HHGILKLSVTDSGIG 315 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IAE +I + T+F Q + + G GLGL I + + G +S + G E Sbjct: 316 IAEEDIENIFTAFAQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKSIVGNGSEFWVE 375 Query: 472 LPNTRVLNFIP 482 +P P Sbjct: 376 MPVDAHSELCP 386 >gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 524 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 88/300 (29%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + +++ A+ I + ++ + ++AE N AKS FLA+MSHELR+PL Sbjct: 124 RLQRLSQQLVEQNAQLIQEIQIRQQTEAALHQAVEQAEAANRAKSVFLANMSHELRSPLT 183 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ILG++++++ ++ +G I++ G HLL LIN+ILDLS+IEA + E+ Sbjct: 184 GILGYAQLLQK---ATDCTPLQQKGLGVIYQCGSHLLTLINDILDLSKIEAQKLEIFPDY 240 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384 I + + + +AQEK ++ SL ++ DEK +RQV++NLLSNA+KFT Sbjct: 241 IDFCLFLNHLAELFKFKAQEKKLKFAYFPLTSLPPEIYVDEKRLRQVLINLLSNAIKFTH 300 Query: 385 IGGRVHVTVGWTSGR----------------------GQYISIKDNGPGIAEGEIPTVLT 422 G V + V S I+D G GI + + Sbjct: 301 Q-GSVTLKVSVRSYSCELNDHKVTSSRQTDKVQKTLANIRFEIEDTGIGITPEKREKIFL 359 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q + + +G GLGL I++ I+ G + + S G + L VL +P Sbjct: 360 PFEQVMES-SHSPEGTGLGLTISKKILVLMGSKIFLESCPNRGSKFWFDL---DVLTNLP 415 >gi|144898721|emb|CAM75585.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 752 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 143/316 (45%), Gaps = 19/316 (6%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL----FKSNVKILSCQAEKDDLIAEL 228 A QA + L +S+A A+ ++I + L + ++ E L+ E Sbjct: 175 AAIAQARHGLSQLSVSMACFFFFAIVCLSFIVWQLDLARRRQEEQLAERNVELAHLLDEN 234 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ ++ + AKS FLA+MSHE+RTP+N I+G +E++ + P Sbjct: 235 AQAREAAE-------QATKAKSEFLATMSHEIRTPMNGIVGMTELLIDTGLTP----ERL 283 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 ++ I S + LL ++N+ILD S++EAG L V + I ++ R + +N+ Sbjct: 284 KFAQTIRTSAESLLTILNDILDFSKLEAGHLHFESVEFDLSLQVEDAIDIVAPRLRGRNV 343 Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 ++ I+PSL D +RQVILNLL NA KFT G V + V G ++ D Sbjct: 344 DLVYWIEPSLRGRYLGDPVRLRQVILNLLGNAAKFT-EFGVVSIHVASGQGGRLRFAVTD 402 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + ++ F Q + G GLGL I + I+ GG S+ +G Sbjct: 403 TGIGIPQAAQASLFGMFAQADSSTARRFGGTGLGLAICRRIVEGMGGDIGFFSEEGKGST 462 Query: 468 VIAI--LPNTRVLNFI 481 LP + + Sbjct: 463 FWFEVMLPLIQPVPAQ 478 >gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] Length = 1032 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 482 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 651 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 652 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770 Query: 469 IAILPNTRV 477 LP Sbjct: 771 TVALPLREA 779 >gi|194367478|ref|YP_002030088.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194350282|gb|ACF53405.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 738 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 20/313 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---- 240 + A + + L N + S Q E+ L +E + + ++ + Sbjct: 2 PLWGALLVALAAAAIVLLMGLRLRTRNRALASLQRERSVLASERDQLRRTTERQGQLEQQ 61 Query: 241 ------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 AE LAK FLA+MSHE+RTPLN IL E+I +G E ++ + Sbjct: 62 LLQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLATA 117 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S Q LL ++++ILD SR+EA EL ++ +L +++ + ++Q A K + + ++ Sbjct: 118 SASSQQLLRIVDDILDYSRLEAQALELEITSFNLRELLDGVVQLMQRAADSKGLVLGLQL 177 Query: 355 DPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409 DPS+ V D +RQV+ NLL+NA+KFTA G+V + V I D G Sbjct: 178 DPSVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVQLRVQRLGEGAAQHQLRFEITDTG 236 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + SF Q + G GLGL I + I+ G+ ++S +G Sbjct: 237 IGIDQALQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGATFW 296 Query: 470 AILPNTRVLNFIP 482 +P +V +P Sbjct: 297 FEIPLLKVPGDLP 309 >gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1171 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 5/381 (1%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R L+V G ++ L P L + + I +++ + + + Sbjct: 342 RHLLVVPARVDGGVNAVVELGFIHAVHPSDLEFLQRVSESIGIAVRSSHDRTRLEQLLEE 401 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + + + +L + L ++NV++ Sbjct: 402 TQRQTEELQAQQEELRVSNEEIEEQSRVLKESQVRMEAQQAELEQTNVQLEEQTQLLAKQ 461 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +L A+ + E + KS FLA+MSHELRTPLN+ L ++++ G L + Sbjct: 462 KDDLTNAQGTLAQKASELERTSRYKSEFLANMSHELRTPLNSSLILAKLLADNKEGNLTS 521 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K + I +G LL LIN+ILDLSRIEAG+ E+ + L V + Q AQ Sbjct: 522 EQVK-FAQTISSAGNDLLALINDILDLSRIEAGKVEVQPEVVILRRTVEALLRTFQPVAQ 580 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK + + ++ + D + Q++ NLLSNA KFT G V + V Sbjct: 581 EKKLGFSISVQEDVAEKLETDPQRFGQILRNLLSNAFKFTEK-GEVSLRVFPVGPGKVGF 639 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +++D G GIA + + +F Q + G GLGL I++ + GG+ ++S+ Sbjct: 640 AVRDTGIGIAPHQQELIFEAFRQADGSTHRKYGGSGLGLSISRDLARLLGGEVTVQSQPG 699 Query: 464 EGVEVIAILPNTRVLNFIPED 484 EG LP P + Sbjct: 700 EGSTFTLTLPVVFARAGSPAE 720 >gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 919 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 168/409 (41%), Gaps = 7/409 (1%) Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCW-TLLTLVE 128 WSL+ + +SL + + + +V W + + Sbjct: 508 SHSLFWSLLVNIGFYLGVSLRGQPSVVETRQATAFVDVFRHTASAADGSRLWRGSAQVQD 567 Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS 188 +L ++ + + + + L A+ Sbjct: 568 LLPLIGRFLGPVRAQEAFLTYARGRGLSSVAELKADADLVHYAETLLAGAL--GGASARV 625 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + + ++ ++ + E + ELE A + R +E + Sbjct: 626 MVASVVQEEPLGIDEVMNILDEASQVRAYSRELELKSQELEAATAKLRAANDRLKELDRM 685 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K F+++++HELRTPL +I SE++ L ++++G I + + L LIN++ Sbjct: 686 KDDFMSTVTHELRTPLTSIRALSEILLETPQASL--AERQKFLGIIVKEAERLTRLINQV 743 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+++IE+G E S + L +++ E + ++++ + Q + + AD + Sbjct: 744 LDMAKIESGNAEWHTSELDLREVIEESVAATYATFNDRHVTLTQDLASHTPRIRADRDRL 803 Query: 369 RQVILNLLSNAVKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 QV+LNLLSNAVKF G+VHV++ G + ++DNG GI+ + F Q Sbjct: 804 IQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGG-LRVDVRDNGSGISAANQKIIFERFRQV 862 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + QG GLGLPI++ I+ GG+ ++S+ G LP ++ Sbjct: 863 GDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNGATFSFTLPFSQ 911 >gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1186 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 7/286 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + ++++ A + L + L+ R +AE N K FLA +SHELR+P Sbjct: 771 GHKYDQGSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEFLAVLSHELRSP 830 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ILG+S ++ + + P E + I R+ + LI ++LD+SRI G+ L+ Sbjct: 831 LNPILGWSRILRSKQLSPTKVEQ---ALETIERNAKLQAQLIEDLLDVSRILQGKMTLNV 887 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 ++++L + + +QL A+ KNI I + P ++V D+ ++QV+ NLLSNAVKFT Sbjct: 888 ASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQQVVWNLLSNAVKFT 947 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG++ V + + I +KD+G GIA +P V F Q A G+GLGL Sbjct: 948 PSGGQIEVQLEQVNL-YAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRQFGGLGLGLA 1006 Query: 444 IAQSIMANHGGQFLIRSKLRE--GVEVIAILPNTRVLNFIPEDNHE 487 I + HGG + S L + G LP V +P D+ + Sbjct: 1007 IVRHFTELHGGTVQVSS-LGQDLGATFTVRLPLNLVEQELPADDEQ 1051 >gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 740 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 10/235 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + ++ A+ + AK FLA+MSHE+RTP+NAILG + + + Sbjct: 506 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT--- 562 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T ++Y+ I+ S ++LL +IN+ILD S++EAG+ + +L D++ ++ L+AQ Sbjct: 563 -TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 621 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 EK IE IDP + + D + QV++NL NAVKFT+ G + ++ + Q Sbjct: 622 EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSARVSQLNEQQV 680 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ++KD G GIA+ ++ + +F Q +I G GLGL I++ ++ GG Sbjct: 681 TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGG 735 >gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1] gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens TC1] Length = 1153 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 21/253 (8%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS FLA+MSHE+RTPLNA++G + ++ + +E ++Y + +G+ LL LI Sbjct: 475 SRLKSEFLATMSHEIRTPLNAVIGLTSLMMDTPL----SEGQRQYAQGVKGAGEVLLTLI 530 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 N+ILD S++EAG+ +L +A ++V E ++ AQ K++E+ P + + D Sbjct: 531 NDILDFSKLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGD 590 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAE 414 +RQ++LNL SNAVKFT G V V V + ++D G GI+ Sbjct: 591 AGRIRQILLNLSSNAVKFTPD-GEVEVQVSVLAHDPNLAHDPNKASLRFEVRDTGIGISA 649 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-- 472 + SF Q + G GLGL I++ + GG+ + S+ G L Sbjct: 650 ENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLEL 709 Query: 473 ---PNTRVLNFIP 482 P +P Sbjct: 710 PLGPAATDTESLP 722 >gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402] Length = 676 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D I + ++ + R+ AE+ N +S FLA++SHE+RTP+ I+G E+I + Sbjct: 118 DDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL--- 174 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E EY ++ S + LL L+N++LD S++E+G + + +L D V + + ++ + Sbjct: 175 -DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISME 233 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 A +K +EI I + ++ D ++QV+LN + NAVKFT G V V+V Sbjct: 234 AHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTET-GYVSVSVKLVFENNS 292 Query: 401 ----------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D G G+ + + SF QG+ AI G GLGL I+++I+ Sbjct: 293 DDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIIT 352 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 GQ I+ + G +P P ++ Sbjct: 353 MMKGQIGIKDNISRGSVFWFKIPLVPSKKKAPHES 387 >gi|300863849|ref|ZP_07108773.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300338152|emb|CBN53919.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 725 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 22/296 (7%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 F I +F+ + + + + +L+ AK +++ + AE N AKS Sbjct: 191 IAFVGGSVFNLLIFTWVFRLIYDEIFKRKQTE---IQLKEAKEEAEQAKLAAEVANSAKS 247 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN ILG+++++ E + + I + G HLL LIN+ILD Sbjct: 248 EFLANMSHELRTPLNGILGYAQILIR---SKNIQENELKGLEIIQQCGSHLLTLINDILD 304 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 LS+IEA + EL+ + + ++ +++++A++K I + DP+L SV ADEK +R Sbjct: 305 LSKIEARKMELAPNEFHFLAFLQAVSEIVRIKAEQKGIAFISQFDPALPISVQADEKRLR 364 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-------------RGQYISIKDNGPGIAEGE 416 QV++NLL NAVKFT GG V VG I+D G G++E + Sbjct: 365 QVLINLLGNAVKFTDRGG-VTFKVGVIESSTIEPEASTLNAVNKIRFQIEDTGVGMSEEQ 423 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q K +G GLGL I+ I+ G + + S+L +G + L Sbjct: 424 RQKIFIPFEQV-GETKRMAEGTGLGLAISSKIVEVMGSKICVTSQLEQGSQFWFDL 478 >gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 862 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 6/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + A+ E R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 616 IQRYKTAEQEMREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTT 673 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++I I+++ LL LIN+ILDLSRIE+G E + +L +++ +L Sbjct: 674 EEVAQFIATINKNCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMP 733 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + D ++QV+ NL++NA KFT G I Sbjct: 734 PGVELLLRMPEGDKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIF 793 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E I + F + QG GLGL I Q+I+ G + S++ + Sbjct: 794 VEDTGVGISEEGIRHIFERFYKVDN----FTQGAGLGLSICQTIVERLKGTISVTSEVGK 849 Query: 465 GVEVIAILP 473 G LP Sbjct: 850 GTRFTVRLP 858 >gi|261417770|ref|YP_003251452.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767417|ref|YP_004132918.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374227|gb|ACX76970.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112283|gb|ADU94775.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 468 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 6/340 (1%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 A ++ L L + Y + + +L + + T Sbjct: 132 AVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAATFWPLAAIFAAALLVVGRRMVRQMTE 191 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMSHE 259 + ++ ++ + E D + + L++ + A+ E+ K FLA++SHE Sbjct: 192 PLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVSHE 251 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPL+ + G+SE + E K Y+ IHR + + L+ ++LDL+R+E Sbjct: 252 LRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQSV 309 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 L + ++ ++ + I + A +K IE+ ++D + V D + QV+ NLL NA Sbjct: 310 PLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-VNGDANRLEQVVRNLLDNA 368 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +++T GG V V + S + I+D G GI + ++P + F + A E G G Sbjct: 369 IRYTPEGGVVTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGGTG 428 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 LGL I + I++ H G S L G+ V LP R Sbjct: 429 LGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPLVREEE 468 >gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 434 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 22/300 (7%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD----ETRKRAEEENLAK 249 + +++ + + + +E+ L+ + + E + + N AK Sbjct: 134 VPVDLTLSLVSFRNERQAIIVARDISERKRNERALKRSHDQLELRVRERTRELDRANRAK 193 Query: 250 SRFLASMSHELRTPLNAILGFS---------------EVIELETMGPLNNETYKEYIGDI 294 S FL+++SHELRTPL A+LGF+ E + + + E + + I Sbjct: 194 SEFLSTVSHELRTPLTAVLGFAKVTSRKLVNSIFPAVERLADPNLRK-DMEVVRRNLEII 252 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 GQ L LIN++LDL+++EA R E + +S +R+ + + ++ ++ + + Sbjct: 253 AGEGQRLTLLINDVLDLAKMEAHRVEYVMAPVSPEAFIRKSVEVTSALFEDTDLTLRLDL 312 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 +P L V D + QV++NL+SNAVKFT G V + + D G GI Sbjct: 313 EPDLPLVNGDADRLMQVMVNLISNAVKFTPQG--VITCAAHVVDGTVRVGVTDTGVGIRP 370 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F Q + G GLGL I + I+ HGG S+ G + LP Sbjct: 371 ELLQAIFEEFTQVGEHLSDRPAGTGLGLTICKHIVEGHGGHIWAESRPGHGSTFLFTLPV 430 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 95/252 (37%), Positives = 151/252 (59%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+E + K+ +K AE+E+ KS FLA +SHE+RTPL AI+GFSEVI+ + GPL Sbjct: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y EY I RSG +L+++N++LD+S+IE+G+ L +SL + V E I ++QL Sbjct: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A EK I I ++ + AD + ++Q+ LN+LSNA+ FT GG++ ++ TS Sbjct: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G G+ E+ + FGQ + + +G GLGLP+A++++ + G+F I S Sbjct: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 Query: 463 REGVEVIAILPN 474 +G + I P Sbjct: 799 AKGTLIEIIFPL 810 >gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 1821 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1172 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1231 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1232 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1291 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1292 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1351 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1352 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1410 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1411 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1470 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA ++ Sbjct: 1471 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1530 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +F Q G GLGL I++ I GG+ S+ G LP R Sbjct: 1531 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1589 >gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1017 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 148/277 (53%), Gaps = 21/277 (7%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + ++A LE +++ ++ +RA N AKS+FLA MSHELRTP+NAIL Sbjct: 509 RVEELQTAAEMRNTLMLAMLEFSQAALEQAAERAAIANRAKSQFLAKMSHELRTPMNAIL 568 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 GF++++ P ++E++G I RSG+HLL LIN++L++S+IEAG+ L+ES + Sbjct: 569 GFTQIMSRSQNIP---PEFQEHLGIISRSGEHLLTLINDVLEMSKIEAGQLVLTESCFDI 625 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + + M L+A EK + + + + + V+ D+ +RQ+++NLLSNA+KFT G Sbjct: 626 VRFIHSIQEMFALKASEKGLMLRIEQEINVPPYVYGDQAKLRQILINLLSNAIKFTINGS 685 Query: 388 -RVHVTVGWTSGRGQ--------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 + + V Y+ ++D G GIA ++ +V +F Q Sbjct: 686 ITLRIKVIPEIDDAIDSSKVEALGSAIALYLEVEDTGCGIALCDLESVFEAFMQTE--RG 743 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 QG GLGL I++ GG ++S L +G Sbjct: 744 RHAQGTGLGLSISRQFARLMGGDITVQSSLNQGSIFT 780 >gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 745 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 125/283 (44%), Gaps = 5/283 (1%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + L + + + + + ++ R A N AKS+FL Sbjct: 183 TAFGPRWIAWRETLVRPHANEPAEFQCVGRDVTDRTESEHALGLARDHAVSANRAKSKFL 242 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A SHE+RTPLN ILG S ++ + N Y + SG+ L++L+ E+LD S+ Sbjct: 243 AVASHEIRTPLNGILGMSTLLLDTPL----NPEQAAYAKAVKTSGEALMSLVEELLDFSK 298 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVI 372 IEAG+ L L ++ E +L RAQ + IEI ID L V D +RQV+ Sbjct: 299 IEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERLPLEVAGDAARLRQVL 358 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNL SNAVKFT+ GG + ++D G GIA + F Q I Sbjct: 359 LNLASNAVKFTSRGGVALIVEPGIWPNEISFMVRDTGIGIAPDAQQRIFREFEQADEHIA 418 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL I++ I+ GG+ + S EG +P Sbjct: 419 RQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIPLQ 461 >gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM 17629] Length = 440 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 15/316 (4%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 V + ++ + + + L + +K + A + Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190 Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + ++ + R + E ++ F A++SHEL+TPL AI G++E+IE Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G + E + +I R+ Q LL+LIN+I+ LS +++ + + L +V++C+ Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCM 307 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 LQ+ A+++ + + + V + + + +++ NL NA+++ GG V+VTV Sbjct: 308 ENLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G ++++DNG GI + + V F + + G GLGL I + I+ H Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGL 424 Query: 457 LIRSKLREGVEVIAIL 472 + S++ G + Sbjct: 425 TLDSEVGRGTTIKVEF 440 >gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713] Length = 627 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + +F++++SHELRTPL ++ + E + + + E++ ++ +I Sbjct: 380 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 437 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355 N++L LSR+++G +L +++ +V + + ++ I I + Sbjct: 438 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFT 497 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NA+K++ GG + + T +SI D G GI + Sbjct: 498 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 556 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ V F + A A+ G GLGL I++ ++ H G+ + S +G LP Sbjct: 557 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 616 Query: 476 RVLNF 480 Sbjct: 617 EYSEE 621 >gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1840 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 35/419 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1191 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1250 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1251 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1310 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1311 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1370 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1371 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1429 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1430 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1489 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA ++ Sbjct: 1490 AVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADADLIAFSVTDTGIGIASSKML 1549 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + +F Q G GLGL I++ I GG+ S+ G LP R Sbjct: 1550 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHRA 1608 >gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 1364 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 13/269 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E ++ + A+ N +KS FLA+MSHE+RTP+NAILG +++ + Sbjct: 620 LTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAA- 678 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I RS + LL +IN+ILD S+IEAGR +L + L + +++ Sbjct: 679 ---LDMVAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLS 735 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 K +E+ + P + D + QV++NL+ NA+KFT G V ++V Sbjct: 736 AKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQ-GEVVLSVRRFPSGDPNK 794 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S++D G GI++ + + + F Q + G GLGL I++ ++ GG+ + Sbjct: 795 LKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 854 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHE 487 S G E ++ + + P+ E Sbjct: 855 ESVPGRGSEFYFVVTLEK--SAPPQAQRE 881 >gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 486 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A++SHE+RTPL+ + G+SE + + + + E KE + I+ + L Sbjct: 250 LEKLRRDFVANVSHEIRTPLSMLQGYSEALLDDIVA--SPEERKELVQVIYDESLRMGRL 307 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363 +N+ LD++R+EAG ELS L +++R Q+ A+E+N+ + + + +V A Sbjct: 308 VNDFLDMARMEAGHVELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTPLAVHEA 367 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 DE + QV+ NL+ NA++ T G + + T + + + + D G GI ++P + Sbjct: 368 DEDRIEQVLTNLMDNALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPSEDVPYI 427 Query: 421 LTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A K A G GLGL I ++I+ H G+ + S L +G +LP Sbjct: 428 FERFYKADKARKRGASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLPVE 483 >gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 504 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 80 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 139 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 140 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 194 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 L +SL +++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 195 VSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 254 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + + + + IS+ D G GIA I + F + + +G Sbjct: 255 NAIKYNRPAGQVRIEIEQIAEQ-VTISVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 311 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +++S++ G +++ EG I LP RV Sbjct: 312 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 355 >gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 1325 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 94/257 (36%), Positives = 151/257 (58%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + ++ AE N KS FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 1067 LRDITQWKRTEEELRTAKRDAETANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGP 1126 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + Y EY DI SG+H+L+++N++LD+S+IEAG+ ++ +A+SL D + E + +LQ Sbjct: 1127 IGSPRYLEYAHDIGNSGKHVLDIVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQP 1186 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A + + I + S+ V AD++ ++Q+ LNLLSNA+++T GG++ V+ + Sbjct: 1187 MANSQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNV 1246 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I I+D G G+ E+ + FGQ + +G GLGLP+ ++++ + QF I S Sbjct: 1247 VIRIRDTGIGMNRKELEQAMKPFGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSA 1306 Query: 462 LREGVEVIAILPNTRVL 478 EG V P RVL Sbjct: 1307 AGEGTLVSIAFPPQRVL 1323 >gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 1014 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864] Length = 1498 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 11/271 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D +A +S E R++ N +KSRFLA+MSHE+R L+ ILG ++E G Sbjct: 394 DDLAPKNRLESALLEA-HRSKHANESKSRFLANMSHEIRVWLSGILGMIHLLE----GTQ 448 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E E++G I S Q LL +IN+ILD S+IEAG+ + + + + + +L Sbjct: 449 LTEEQHEFLGTIKMSAQILLTVINDILDFSKIEAGQLTIERVEFDIFNTIEMVVELLYPS 508 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A KN+ + IDP + V D ++Q+++NLLSNA+KFT GRV + Sbjct: 509 AGNKNLLLQCFIDPRIPTKVLGDPSRLQQILVNLLSNAIKFTKK-GRVFLKCTLENETLE 567 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G G+ + + F Q + G GLGL I++S++ GG Sbjct: 568 NATVLFEVHDTGIGLTPDTLARLFRRFSQEDASTTRKFGGTGLGLVISKSLVELMGGSIG 627 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 S +G LP V D+ + Sbjct: 628 ADSVSGKGSRFWFRLPVGVVAEQADTDDSNA 658 >gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 806 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 151/251 (60%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I+E + K+ +K AE+EN K+ FLA +SHE+RTPL AI+GFSEVI+ + GP Sbjct: 550 LHDISEWKQEKNELYHAKKMAEKENSHKNDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 609 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + Y EY I RSG +L+++N++LD+S+IE+G+ ++SL + + E I +++L Sbjct: 610 VGSPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNFHFESVSLNETISEAISLMEL 669 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A EK I + + ++AD + ++Q+ LN+LSNA+ FT GG++ ++ +T + Sbjct: 670 YANEKRILVRTSFSNDIPPIFADLRSIKQIALNILSNAIHFTPSGGQIVISTAYTRNKEV 729 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + +KD G G+ + E+ + FGQ + + +G GLGLP+ ++++ + G+F + S Sbjct: 730 VLRVKDTGIGMTDYELEKAMKPFGQIPNSQQVRGEGTGLGLPLTKAMVDANMGKFSVFST 789 Query: 462 LREGVEVIAIL 472 +G + I Sbjct: 790 PSKGTLIEIIF 800 >gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] Length = 618 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMIND 433 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + +K I +++ Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALW 493 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLAKI 552 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612 >gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1083 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 8/270 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 H + + + L + + ++ + AEE K+ F A+MSHE+RTP+ Sbjct: 448 KHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIRTPI 507 Query: 265 NAILGFSEV-IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 NAILGF+EV ++ + ++G I S + LL +IN+ILD+S++E+G++ L Sbjct: 508 NAILGFAEVVMQDSDLSSQTAG----HVGTILSSAKSLLGIINDILDVSKMESGKFALEI 563 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 L + + + + L+ RA EK++++ D +LS D +RQV+LNL NAVKF Sbjct: 564 VCFHLPNALADALRTLEHRADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAVKF 623 Query: 383 TAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T G + + V + + + D G G+ E ++ V SF Q + G GLG Sbjct: 624 T-EHGSITIGVEVGDAPEILHFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTGLG 682 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ I+ G+ + S+L +G Sbjct: 683 TTISKQIVEMMDGEIWVESQLGKGSVFHFT 712 >gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 464 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + TY+ Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMRLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V ++ + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELSTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] Length = 660 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 9/293 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + +L +L Y Y + + + +LE ++ + ++RAEE Sbjct: 370 FILIIFLVLVGSLMISLYYYYRTKILKNHLERTTKQLREDKKKLEESEVELRDAKERAEE 429 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N KS F+++MSHE+RTPLNAI+GFS +I N KEY + + LL L Sbjct: 430 ANQLKSAFVSNMSHEIRTPLNAIVGFSSLI---IGSVEQNNELKEYADIVQTNSNLLLQL 486 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+++LD+SR+E+G+ + L++ + I L R + +++I ++ ++ D Sbjct: 487 ISDVLDISRLESGKLQFKYEWCELVNHCQNMI-TLTNRNKTMDVDIKLQMPKEPYMLYTD 545 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTS 423 ++Q+I+NLL+NA+KFT GG + + + S+ D G GI E + V Sbjct: 546 PLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDTGTGIPEDKQELVFQR 605 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + QG GLGL I + + GG I + G I P + Sbjct: 606 FEKL----NEFVQGTGLGLAICKLTIQYMGGDIWIDKNYKNGARFIFSHPIKK 654 >gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 873 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VAL +Q++ S + + + + ++ + L + I + Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++++ AKS FLA+MSHE+RTP+NAI+G SE++ N +E Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H+S +L+ +IN+ILD S++EAG+ L E L +V C + +A +KN+++ Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + ++ + V D+ + Q++LNL+ NAVKFT G V + V + S+ D G Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESEHGFD-FSVSDTG 530 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E + ++ F Q + +G GLGL I++ +++ + G+ + S +G Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKGSCFS 590 Query: 470 AI--LPNTRVLNFIPED 484 LP + P + Sbjct: 591 FSLQLPKRSQPHSEPVE 607 >gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 466 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 149/352 (42%), Gaps = 15/352 (4%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + V + EY+ S + + L +L F + A ++ Sbjct: 127 MLYVARMSSNGEYIFRLASPYSGMQEYLIMLLPAVLLSFAIAFFASSMEAERFSQSITRP 186 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + DIS + + Q E + + E +R E Sbjct: 187 LQDISRE---------MMKVDGDYADLHFDRCPYQ-EINVIADTTTKMSRNVKEYLERLE 236 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +E + F ++ SHEL+TP+ +I G+ E++E LN ET +++ I + + + Sbjct: 237 QEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETTHDFLKRIKKEAMRMTS 294 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+++IL +SR+E+ + I + D++ E + L +A E+ + I ++ + ++ A Sbjct: 295 LVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHKQFES--FAIRA 352 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + M ++ +NL+ NAVK+ G + V + ++++D+G GI + + + Sbjct: 353 DLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFV-LTVRDSGVGIPQESLNRIFER 411 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + + G GLGL I + ++ + G + S++ +G LP Sbjct: 412 FYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLPVA 463 >gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 574 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 138/277 (49%), Gaps = 8/277 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L A + + RK AE N AKS FLA MSHELRTPL Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTTELVTARKDAERANKAKSEFLAMMSHELRTPL 225 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+G + ++ + P + + ++ S + LL +I+++LD S+IE+G + L+ Sbjct: 226 NAIIGLIDTLKSTQLTP----EQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 ++ D V + + A +K + + D P + D + Q++ NL+ NA+KFT Sbjct: 282 WSNVRDTVTFVLSEQKKAADDKGLTLTISSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VHV++ + YI+++D G GI+ ++ ++ + F Q I G GLGL Sbjct: 342 -EHGHVHVSIKYQQSSF-YIAVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLN 479 I + ++ G+ + S+ +G + LP TRV N Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVQLPVLTRVTN 436 >gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1798 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 108/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + +LV + G L E L + T+L + ++ Sbjct: 1161 FKPGESLIGAAAQEKRTILVDHVPSGYLKIASGLGEAPPAHVIVLPLLFEGTVLGVIELA 1220 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-----ITYHL 207 A F FLS ++A S I + L + Sbjct: 1221 AFQQFTHIQRDFLSQLAEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQKA 1280 Query: 208 FKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 +++ L +AE EV + ++ R+ EE KS FLA+MSHE Sbjct: 1281 LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHE 1340 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1341 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1399 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1400 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1459 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA G++ Sbjct: 1460 AVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMR 1519 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1520 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1575 >gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 800 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 112/368 (30%), Positives = 171/368 (46%), Gaps = 10/368 (2%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS---FFPVVVALSTQAIM 180 + T +YL + S + I + L N ++ +V + + Sbjct: 203 VPADYVIRKTHQYLVLVMSTFVGIFAVVIVLINRLVKQSVIQPIQQLMRLTRQVIRGEGC 262 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 S + + L T NV+ ++ A+L + + R+ Sbjct: 263 SPTLPTVPLTRRTDELGDLSRAFTQMSHTINVRQQDLNRAVNERTAQLAESMQSAQRARQ 322 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE N AKS FLA MSHELRTPLN +LGF +++E +T+ ++ +E + I+RSG+H Sbjct: 323 EAEMANRAKSAFLAHMSHELRTPLNVMLGFVQLLERDTL---LSDRQRESLQTINRSGEH 379 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-S 359 LL LIN++L+LSRIEAGR EL +A L + M Q+R Q K + + ++ L Sbjct: 380 LLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQEMFQIRVQNKQLSLTLELAKDLPP 439 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIP 418 V ADE +RQV++NLL NA+KFT GG + V VG+ + D G G+A E+ Sbjct: 440 YVVADEGKLRQVLINLLGNALKFTDRGG-ITVRVGYELIRERLAFVVVDTGRGMATAELE 498 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F QG + +G GLGL I++ + GG+ I S + G V + T Sbjct: 499 QLFEPFVQGCTGLNPQ-EGTGLGLTISREFVRLMGGEIQISSAIGCGSTVRFTIKVTPTQ 557 Query: 479 NFIPEDNH 486 P Sbjct: 558 TAPPLPTP 565 >gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei 87.22] gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1424 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 101/410 (24%), Positives = 169/410 (41%), Gaps = 25/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R + V ++ L E L I +L + + Sbjct: 694 RIPVGRSLVGQAARNRRPISVEELPPNYVTISSGLGEAVPSALVVLPIVVEDQVLGVIEL 753 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITY 205 +++ F + FLS + ++ I++ D L Sbjct: 754 GSVTPFTQIHQDFLSQLMPTIGVNLNTIVANARTDELLGESQRLTAELQARSEELQVQQD 813 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ + +++E ++ R+ E + KS FLA+MSH Sbjct: 814 ELQRSNAELEEKASLLASQNSDIEAKNLEIEQARQELETRAQQLALASKYKSEFLANMSH 873 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 874 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 932 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 +++ + L ++ + +K+++ P + + D+ +RQ++ NLLS Sbjct: 933 MDVTPERVPLRKLLEYVEATFRPMTTQKSLDFTVATAPGTPADLLTDDSRLRQILRNLLS 992 Query: 378 NAVKFTAIGGRV---------HVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQG 427 NAVKFT GG V V G G +KD G GI + ++ T+ +F Q Sbjct: 993 NAVKFTEHGGVVLSIEPAADREVPTGVLRGGAVVAFRVKDTGIGIPQQQLETIFGAFQQA 1052 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I + I GG + S +G LP R Sbjct: 1053 DGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVARA 1102 >gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 732 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 11/274 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + D + K+ E + K F+ +MSHE+RTPLNAILGF+ +++ + + Sbjct: 208 IRRQQQLILELDRSEKKIREIAMIKENFMTNMSHEIRTPLNAILGFTNLLKSRKLDDSST 267 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++G I ++G++LL +IN+ILDLS+IEAG + + S+ ++ + + + Sbjct: 268 E----FVGSIQKAGENLLTIINDILDLSKIEAGMVRIESNPFSVRGLLHSIQTLFSEKVK 323 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK + + +I + ++ D + QV++NL+ NA+KFT GG + ++V G I Sbjct: 324 EKKLVLQGEIASDVPDTLIGDATRLTQVLVNLIGNALKFTEKGG-IVISVSNRQSDGNII 382 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I D G GI ++ ++ F Q +I G GLGL I + ++ GG + Sbjct: 383 QLAFAITDTGIGIEPDKLGSIFDRFNQAEDSITRKYGGTGLGLSIVKDLVILQGGDISVE 442 Query: 460 SKLREGVEVIAILPNTRVLNFIP-EDNHESTQYK 492 S+ +G +P +P D+ + +Q++ Sbjct: 443 SEPGKGTTFRFFIPYAIASRQMPIPDSIDISQFR 476 >gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 649 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 154/355 (43%), Gaps = 18/355 (5%) Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 P + + + + +A A + A + P A+ + +LA + Sbjct: 18 FPRLVFALRWSMIFLAAFGGAYGFIIGSRAESSGYNPHTFAIGASFLF-------ALACL 70 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA------EEEN 246 S ++ + A+++ + + E + + R A E+ Sbjct: 71 GLAVQSIRLRWLRRRLQALERHNETLADRNWELRDAEERARVLHQARDEADAPRRDEDAT 130 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KSR LA SHE+RTPLN I+G S ++ + P Y + SG L LI+ Sbjct: 131 RRKSRLLAMASHEIRTPLNGIIGMSGLLLDTALTP----EQATYARAVKTSGDALATLID 186 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 E+LD SRIEAGR+EL +L ++ + + +L RAQ +EI ID + V D Sbjct: 187 ELLDYSRIEAGRFELDSRPFALTALIEDIVELLAPRAQAGALEIAADIDDRVPSRVIGDA 246 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +RQV+LNL NA+KFT++GG V + +++D G GIA + F Sbjct: 247 ARLRQVLLNLAGNAIKFTSVGGVVLIVQPGERDGEISFAVRDTGIGIAREAQTRIFGEFE 306 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 Q I + G GLGL I+Q I+ GG+ + S+ G A +P T + Sbjct: 307 QADDGIARSFGGTGLGLSISQRIVERMGGRIALDSQPGRGSTFTASIPLTAADDS 361 >gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 609 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ +L + F+A++SHELRTPL + + E + M + ++ + ++ Sbjct: 373 EKIDLERREFVANVSHELRTPLTTMRSYLEALAEGAMHDEDIAPQ--FLNVTRTETERMI 430 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++N++L LS++++ Y + + ++ +D I ++E+N+ + + + V Sbjct: 431 RMVNDLLQLSKLDSKDYRMKKEWVNFVDFFNRIIDRFDF-SKEQNVTFQRNLPEHAAFVE 489 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ N++SNA+K++ GG+V + + I I D G GI + + V Sbjct: 490 IDEDKLTQVVDNIISNALKYSPEGGQVSFNIVEQEEQ-LLIRISDQGVGIPKDNLDKVFE 548 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ H G+ S +G + LP R Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEVVEAHDGKIWAESTEGKGTTISFTLPFVRSDE 605 >gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 953 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS ++++SHELRTPL+++LGF+E++ + + P E + Y+ I++ + L N Sbjct: 576 EVDKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKP---EKQERYLKTIYKEAKRLTN 632 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LDL R+E+G +++ +++ E + + + I D S V Sbjct: 633 LINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQ---NMHSIVFIDDASDVIVEG 689 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + + QV++NL+ NA+KF+ GG V +++ ++IKD G GI +IP + + Sbjct: 690 DRERIAQVLMNLVGNAIKFSPQGGSVTISMK-NDLNNLSVTIKDEGIGIPTEDIPKLFSK 748 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + + + G GLGL I Q I+ H G+ I SK +G V LP V Sbjct: 749 FQRIDNSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELPL--VAEPQEY 806 Query: 484 DNHESTQ 490 HE + Sbjct: 807 TTHEGAE 813 >gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] Length = 1127 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 6/356 (1%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W L + + + + + L+I + + ++ + + + + Sbjct: 328 VWGLSVELPEKEAFSRIKQLEQIFVIAMILAIVCVVIASHFLSNSITAPLLRLTWVAERL 387 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + ++ + + +S + + ++ ELE S+ Sbjct: 388 SAGDLDQKMISTDRKDEIGRLAVSFARMQRSIREKIQLIKAQN---EELETNLSIIQHKN 444 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + E + K FLA+ SHELRTPL+ ++G +E + GP++ +++ + I SGQ Sbjct: 445 QELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS-ASHRHQLEIIINSGQ 503 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L NL+N++LD ++ G +++ L + + K I I ++D SL Sbjct: 504 RLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVDKSLP 563 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 SV+ADE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI E+ Sbjct: 564 SVYADEQRLEQVLYNLIGNAIKYTSE-GKIVISASVV-DQFLRVQVVDTGHGIPADELEH 621 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 622 IFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPLA 677 >gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1193 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 107/498 (21%), Positives = 185/498 (37%), Gaps = 26/498 (5%) Query: 10 KDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN 69 +D+ S + L ++ + V S ++ + + W Sbjct: 276 RDLVARTSSSVGRLVSAAEAEAAENERRTEAAVSSGRTTMLVVAMLTFFGPLLFIWLYLG 335 Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129 + A + E+ L V + A+ + Sbjct: 336 RSVVARLAGLASSMHAIAEGDFQAPIPGQGNDEITDMAAELAVFRDAMAKLQESSEALIE 395 Query: 130 GTWTPEYLT---IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH--- 183 + A ++ S L N + + Sbjct: 396 SERRLRRILDTSPLALAISRVSDSAILLVNPRWSELYRVPKARALGMTVASCYSDPANRL 455 Query: 184 --VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD-------LIAELEVAKSL 234 V + G + H F + + + + + I + ++ Sbjct: 456 RLVELVKKRGFVGGFECRMRASDGHEFWAMLSAAEIEMDGEPAVIVSSTDITRHKEEEAA 515 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E +K AEE + AKS FLA+MSHE+RTP+N +L ++++E + +E I Sbjct: 516 LAEAKKVAEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL----PAEQREMARVI 571 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S LL +IN+ILD S+IEA + +L +SL ++V +L +RAQEK I + I Sbjct: 572 RDSATSLLTIINDILDFSKIEADKLQLELVELSLSELVEGVADLLTIRAQEKGISLITFI 631 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNG 409 DP+L+ V D +RQ+I NL NA+KFT G V ++V R + +I D G Sbjct: 632 DPALTDMVIGDPIRLRQIITNLAGNAIKFTDK-GYVRISVRALDPRERPLRLEFNITDTG 690 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + F Q + I G GLGL I + ++A G+ +RS + +G Sbjct: 691 IGLDSEQQARLFEPFMQADVTISRRYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFW 750 Query: 470 AILPNTRVLNFIPEDNHE 487 +P + PE+ + Sbjct: 751 FQVPLEPA-DVAPEETPD 767 >gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] Length = 1014 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1155 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 3/268 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 445 LEQTNEQLSERTDALDRKNDELMQAQQELQARADELQRSSKYKSEFLANMSHELRTPLNS 504 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L+ E K + I+ +G LLNLIN+ILD++++EAG+ E+ Sbjct: 505 SLILAKLLAENGEGNLSAEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L +V M A+ K + ++P + ++ D + + Q++ NLLSNA+KFT Sbjct: 564 QLERLVEGLRGMFLPLAEHKGLAFEVNVEPHVPVTLFTDRQRLEQILKNLLSNAIKFT-D 622 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V +T+ +G G +++D+G GIA + + +F Q + G GLGL I+ Sbjct: 623 HGQVSLTISHQAGTGIVFAVRDSGIGIAADQQQAIFGAFHQVDGSSNRRYGGTGLGLSIS 682 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + + GGQ + S +G +P Sbjct: 683 RDLAHLLGGQISVDSNPGQGSVFSLTMP 710 >gi|266621905|ref|ZP_06114840.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288866436|gb|EFC98734.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 853 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 10/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + + T Sbjct: 319 LRYFSITRSQLNELEKARQTALEANKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 375 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + + + I S +HLL LIN++LD+S+IE+G+ L+ ISL ++V + ++Q Sbjct: 376 DDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQP 435 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + + K ++ L+ VW D + QV+LNLLSNA K+T GG + +++ Sbjct: 436 QVKTKKQTFDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTPEGGSIQLSLSEEKSPK 495 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 YI +KDNG G++ + + S+ + A +G GLG+ I + I+ G Sbjct: 496 GENYVRIYIKVKDNGIGMSPEFLKRIYESYSRADGARIHKTEGAGLGMAITKYIVDAMEG 555 Query: 455 QFLIRSKLREGVEVIAIL 472 I+S+ +G E + + Sbjct: 556 TIDIQSEPDKGTEFLLMF 573 >gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1216 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 23/322 (7%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + L Q + + + L+ + + T + ++ + Q Sbjct: 778 GIWSASQTLRFQLLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRLRRLTAWQ------- 830 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L+ ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ Sbjct: 831 --------LAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 878 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 T + Y I R+G HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE Sbjct: 879 TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQE 938 Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + +I + D +RQ++LNLL+NA+KFT G V + + +G Sbjct: 939 RGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 997 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D GPGI + + F QG A S G GLGL I Q + GG + S+L Sbjct: 998 EVADTGPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRL 1057 Query: 463 REGVEVIAILPNTRVLNFIPED 484 G + LP V + P D Sbjct: 1058 GAGTRFVVDLPLHWVASNAPLD 1079 >gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1003 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 96/492 (19%), Positives = 177/492 (35%), Gaps = 40/492 (8%) Query: 3 RSRKNKEKDVG--LLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVA 60 R+ G +++ G + + +IT + + + V L A Sbjct: 301 RAMNGTRASSGGHVVVRRVGTRFVISDRL-PESGLTLITTFSWRSVASATAVGVSVTLAA 359 Query: 61 NIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 + +W I A ++ + G + + Sbjct: 360 ALFAISM------LWIAIVTFDLRALRPANRRAIRLIESEAFNRTLIRTAPAGLLLLSAA 413 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 + + L + + + + Sbjct: 414 DG--------ETMVRNDAVLAYDDGVSGLPLGKRIWQACRERQRAGADERRFVMQQELAV 465 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 D + Y+ H+ ++ + + + ++ + E R Sbjct: 466 ERAGHDTT-------------YLAAHVVRTKFRGVDVLLCTLTDVTARKLTEDKLREARV 512 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A++ N AKS FLA+MSHE+RTPLNAI+G E++ + T + + I S Sbjct: 513 AADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGRAEL----PPTEQRRLKTIVSSSDA 568 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LLN+IN++LDLS+ E+ + L L ++++ + + A K + + + L+ Sbjct: 569 LLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKGLSLECHVAAELAD 628 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEG 415 D +RQ++ NL+ NA+KFT GG + + G I+++D G GI Sbjct: 629 GYVGDPTRLRQLVSNLVGNAIKFTEHGG-ITIDARLARGDARAGCVEIAVRDTGVGIPGE 687 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +PT+ + Q +I G GLGLP+ + I G+ + S+L EG +A LP T Sbjct: 688 ALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRLGEGSTFVATLPLT 747 Query: 476 RVLNFIPEDNHE 487 + E Sbjct: 748 DAPAGCLDAASE 759 >gi|329904038|ref|ZP_08273656.1| two-component hybrid sensor and regulator [Oxalobacteraceae bacterium IMCC9480] gi|327548159|gb|EGF32872.1| two-component hybrid sensor and regulator [Oxalobacteraceae bacterium IMCC9480] Length = 697 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 92/456 (20%), Positives = 174/456 (38%), Gaps = 51/456 (11%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLA 81 L + F R + H ++L R++ + +L+V N + + Sbjct: 4 RLATIAAALRLFARHRNSEHEQALVRMAMASLICLLVVWQSALAHASNVMLALIGFFLCL 63 Query: 82 VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYK 141 + + ++ + R + + A G+ +L Sbjct: 64 SALILIDIRRR--------PQPVRTRRVIAILNDAGGITCGMLFA-----GELGMPIYLF 110 Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 + ++ + VV + L LA +F+ Sbjct: 111 YLWITFGNGFRFGKPYLYGTLLASLAGLSVVLWQVDFWQQHRAAGLGLWCGLALLGLYFS 170 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + L +R E N AK F++S+SHE+R Sbjct: 171 TLVTRLTG----------------------------ALQREEAANQAKRSFISSVSHEMR 202 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+G ++++ G + + +G + + Q +L L+ ++LD S+IEAG+ + Sbjct: 203 TPLNAIIGMTDLL----HGTRLDREQEAMLGSLDTAAQLMLALVEDVLDFSKIEAGKLVI 258 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 ++A + I + + +A + +++ IDP+L + D +RQV++NL+SNA+ Sbjct: 259 EDTAFDPHRLAGGIIDLFRYQAAARGLQLRLDIDPALPHGLCGDPHHLRQVLVNLMSNAI 318 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G V + + + G+ + ++ D G GIA + SF Q + Sbjct: 319 KFTEQ-GHVVLRIALLADAGERVRVRFDIEDTGIGIAPAAQARIFDSFTQADASTTRRYG 377 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLG I++ ++ GGQ +RS + G L Sbjct: 378 GTGLGTTISRQLVELMGGQLGLRSSVGAGSTFWFEL 413 >gi|251836869|pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836871|pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism Length = 258 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +R + + K+ F+A++SHELRTPL AI ++E I +G L+ T KE++ Sbjct: 3 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 61 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I HL NL+NE+LD SR+E +++ + L D+V + ++ A N+ + Sbjct: 62 EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 121 Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407 + + P + D +RQV+LNLL+N VK++ V V + G I ++D Sbjct: 122 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 180 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG GI + + F + ++ G GLGL I + I+ HGG+ + S++ +G Sbjct: 181 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 240 Query: 468 VIAILPNTRVLN 479 +P R Sbjct: 241 FFVWIPKDRAGE 252 >gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 867 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS++++ + ++ Sbjct: 622 IQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSS 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++++ I+ + LL L+N+ILDLSRIE+G + S+ +L I+++ Q + Sbjct: 680 EEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDS-QRLSM 738 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +E+ + D ++QV+ NL++NA KFT G + + I Sbjct: 739 PQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTK-GYILLGYRVEDSGHTVI 797 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI++ + + F + QG GLGL I Q+I+ G + SKL Sbjct: 798 FVEDTGSGISDENLGHIFERFYKADN----FTQGAGLGLSICQTIVERLNGTITVTSKLG 853 Query: 464 EGVEVIAIL 472 +G + Sbjct: 854 KGTRFEVRI 862 >gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074] gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1827 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 108/416 (25%), Positives = 170/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + +LV + G L E L + T+L + ++ Sbjct: 1190 FKPGESLIGAAAQEKRTILVDHVPSGYLKIASGLGEAPPAHVIVLPLLFEGTVLGVIELA 1249 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-----ITYHL 207 A F FLS ++A S I + L + Sbjct: 1250 AFQQFTHIQRDFLSQLAEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQKA 1309 Query: 208 FKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 +++ L +AE EV + ++ R+ EE KS FLA+MSHE Sbjct: 1310 LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHE 1369 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1370 LRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1428 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1429 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1488 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA G++ Sbjct: 1489 AVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMR 1548 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1549 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1604 >gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC BAA-613] gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC BAA-613] Length = 465 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 70/329 (21%), Positives = 150/329 (45%), Gaps = 12/329 (3%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY-ITYHLFKSN 211 + +PY+ + P++ + + + V + ++++ I+ + K Sbjct: 138 MVLRLAVPYSGIQEYLPMLFPAAILSFLMAMVCSVVTTRRFVSSVTRPLRDISKAVMKVK 197 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRK------RAEEENLAKSRFLASMSHELRTPLN 265 Q E +A ++ + ++ + E+E + F ++ SHEL+TP+ Sbjct: 198 GDYTELQFESCQYPEINVIAGTIMNMSKDVKEYLSQIEKEKQIRQEFFSNASHELKTPIT 257 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +I G++E++E + ++ ++ I + + LIN+IL +SR+E+ E+ S Sbjct: 258 SIQGYAELLESGMI--QDDGLKLDFAKRIKKEAAGMTGLINDILMISRLESMDAEVMFSD 315 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + +++E + L+ A + + P + A+ + M+++ NL +NA+K+ Sbjct: 316 VRISVLLQEIMDSLKPLAASCQVFLHVDCKP--LCIRANLQQMKELFTNLATNAIKYNRP 373 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG+V +TVG + +KDNG GI + + + F + + G GLGL I Sbjct: 374 GGQVWITVGEQGDDML-VRVKDNGVGIPKESLDRIFERFYRVDKGRSRKQGGTGLGLSIV 432 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 + I+ + G + S+L +G E +P Sbjct: 433 KHIVNFYHGTIHVTSELDKGTEFTVTIPL 461 >gi|330959044|gb|EGH59304.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 652 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 144/332 (43%), Gaps = 12/332 (3%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 F F +ALS +S + L I Sbjct: 191 FTFLFARRLALSLSRPISDMAGALEAIQQGDYHTPLPVSDDAELGALARHINDLADNLHR 250 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 E + + + + R+ AE+ N AKS FLA MSHELRTP+N +LG +++E M Sbjct: 251 TSLEQQRSVAQLIQMREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---- 306 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + EY S +HLL +IN+ILD SRIE ++ A +L ++V A Sbjct: 307 TDEQSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSA 366 Query: 344 QEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 ++ + + I P L +V D +RQ+++NL+ NA+KFT G V V W Sbjct: 367 LQRKLLLKLHIQPGLEALTVVGDPTRIRQILVNLIGNALKFTEQ-GTVSVDAEWAMLDHD 425 Query: 402 YI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ ++ D+G GI + ++ +F Q +I G GLGLPIA+++ GG Sbjct: 426 HLRFTCTVHDSGIGIEADRLESMFDAFRQADSSISRRYGGTGLGLPIARTLAERMGGTLR 485 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 +S+ G +P V +P D E Sbjct: 486 AQSEEGSGSVFTLQIPLA-VSRDVPVDVSEQP 516 >gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB] gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB] Length = 764 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 12/284 (4%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + A I+E + + + AE K+ FLA+MSHE+RTPLNAI+G + ++ Sbjct: 353 VRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSHEIRTPLNAIIGMAHIL 412 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + K+Y+G I +G+HLL LI +LD+S+IEAGR EL +++ +IV E Sbjct: 413 SRTELDT----AQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRLELENIPLAVENIVFE 468 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTV 393 + M+ +A EK +++ + S + D +RQ +LN +SNA+KFTA G V V Sbjct: 469 VLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNAIKFTADGSIDVRVIT 528 Query: 394 GWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S + D G GI+ + ++F Q + G GLGL I + + Sbjct: 529 QAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYGGTGLGLAITRQLAEL 588 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVL-----NFIPEDNHESTQ 490 GG+ + S +G R IP + ES + Sbjct: 589 MGGEVGVSSTPGQGSLFWFTASLKRASAPLARPAIPLLSAESAE 632 >gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG2J17] Length = 669 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + A+ + +RAE N AK+ FLA MSHELRTPLNAILG+S++++ + GPL N Sbjct: 412 ITDRKQAEESLRKAMERAEFANRAKAEFLAHMSHELRTPLNAILGYSDILKSQVFGPLGN 471 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y +Y+ +I +G HLL ++++ILD+S++EAG ++ +S I + ++EC IM+ RA Sbjct: 472 EKYSDYVENISAAGGHLLGILSDILDVSKVEAGELDIEDSEIDIAAAIKECKIMMLERAD 531 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + L + AD + +RQ++LNLLSNAVKF+ G+V + + I Sbjct: 532 IAKVSLASLVAGDLPRLRADRRRLRQILLNLLSNAVKFSHEKGKVSIAAETDAAGAIVIR 591 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA + +L FGQ + G GLGL + S+M HGG I S Sbjct: 592 VADTGIGIAPENMGKILQPFGQVKESYVGKPGEGSGLGLSLVNSLMDLHGGTLDIDSTPG 651 Query: 464 EGVEVIAILPNTRVLN 479 EG + I P R LN Sbjct: 652 EGTTMNIIFPPERTLN 667 >gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1358 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 78/280 (27%), Positives = 132/280 (47%), Gaps = 24/280 (8%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ R+ AE AKS FLA+MSHELRTP+N +LG ++++ + + Sbjct: 931 ITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATPL----D 986 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ H +G +L L+ ++LDL+R+E+GR + E + +E + +L+ A Sbjct: 987 PEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAVLRPEAD 1046 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K I + D ++ D + +RQ++LN++ NAVKFT G V + + G Sbjct: 1047 RKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDR-GHVRLLARFEPSAGPSAT 1105 Query: 401 --------------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 Y++++D G GI + + F Q A+ G GLGL I + Sbjct: 1106 AEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGLGLSIVR 1165 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 I+ G+ + S+ G V LP ++ +P Sbjct: 1166 RIVDLMEGEVSMTSEEGRGTTVTLRLPVA-AMDRLPAQEP 1204 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 157/416 (37%), Gaps = 34/416 (8%) Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIA----IGLCWTLLTLVEPGTWTPEYLTIYKSA 143 ++ +L+ + + L W L + P W Y ++ A Sbjct: 29 FASDVFSSAPPASLAFVASARGMLLALVLPLGTLALQWMLWDYIRPYVWFLFYPAVF-LA 87 Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201 +L L+ ++ + V F P V++ + + + + L L +L+ Sbjct: 88 SLAGGLAGGLIATLLSALLVLYFFIPPVLSFMVVKPVDVVAVAMFLGIGLMISLAHQRVR 147 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + ++ + + + E D+ + L + RAEE ++ K+RF A++SHELR Sbjct: 148 DAVRRVVETQERQQAERVEADEATSRLRATNAELAARCARAEELDVLKTRFFANISHELR 207 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 + +E ++ ++ + + R+ + L ++++LDLSR++AG + Sbjct: 208 ---TPLTLLLGPLERLLAETSEDDEHRHSLFTMLRNARLLHQHVDDMLDLSRVDAGAMQP 264 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + L + R A ++ + + L D R+++LNLLSN+ K Sbjct: 265 RHAEADLSALTRTTCAYFDTLAAQRGMHYGVQAPLRL-DAQVDTDKYRRILLNLLSNSFK 323 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ-GSIAI-----KSAE 435 FT GG V VT+ G +S+ D+GPG+ V + Q G A Sbjct: 324 FTPDGGSVSVTLERQ-GDEALLSVSDDGPGVPAHLRGAVFERYRQSGEGARGLHGGSGLG 382 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVE----VIAILPNTRV--LNFIPEDN 485 I + HGG + +G E LP + P ++ Sbjct: 383 L------AIVKEFAELHGGTTSV----GQGAEGGALFQVRLPLAAPPGVEVAPAES 428 >gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 939 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 11/255 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E + + ++ A+ N AKS FLA+MSHE+RTP+N I+G E+ + Sbjct: 541 EDVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIEL----ALLKD 596 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + + +S HLL++IN+ILDLS+IEAG+ EL + L IV + + L L Sbjct: 597 PSCPARGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSLA 656 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSG 398 A K + + I+ + + DE +RQV++NL+ NAVKFT GR+ V V T G Sbjct: 657 ASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHE-GRILVNVETVLRTDG 715 Query: 399 RGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G GI E + + SF Q +I ++ G GLGL I++ ++ GG+ Sbjct: 716 GRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGEV 775 Query: 457 LIRSKLREGVEVIAI 471 +RS G Sbjct: 776 SVRSTPGHGSSFTFT 790 >gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 289 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE + +G + Sbjct: 3 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 62 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L ++ L +++ +++++ + Sbjct: 63 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 121 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A ++I++ + + + D + +Q++ NLL+NAVKF+ GG V + V Sbjct: 122 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 181 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 182 LIDGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 241 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 LGL + + + HGG + S G + LP + Sbjct: 242 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRSPESA 282 >gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 576 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 19/290 (6%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 Y + + + L E+ + K + A+ N AKS FL+ +SH Sbjct: 293 LLRYHDELERRVAERTAELTRANERLTHEVTIRKR----AEEAADAANRAKSEFLSMVSH 348 Query: 259 ELRTPLNAILGFS------------EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 E+RTPL +++GF+ ++ + E E +G I G+ L +LIN Sbjct: 349 EIRTPLTSVMGFAVIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGIIVSEGERLKHLIN 408 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQ-LRAQEKNIEIFQKIDPSLSSVWADE 365 ++LDL+++EAG+ + ++VR + + L A + + I L V D Sbjct: 409 DVLDLAKLEAGKMAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTSIQGRLPEVIGDR 468 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV++NL+SNA+KFT G V T+ I + D G GI E E V F Sbjct: 469 DRLIQVLVNLVSNALKFTEQ-GSVTCRA-RTADGYVVIDVADTGIGIPEAEQHKVFEKFN 526 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + + +G GLGL I + I+ +HGG+ S+ G LP Sbjct: 527 QIGATLTNKPKGTGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALPIA 576 >gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 543 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + ++ ++A+ + KS FLA+MSHE+RTPLNAI+GFS ++ E L E +EY Sbjct: 305 EDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSD-LRPEDIEEYA 363 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I ++GQ L+ LI++ILDLS+IE+ E + S SL + + M +L + +E+ Sbjct: 364 ALIEKNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVK-PGVELI 422 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + S+ AD + QV+ NL++NA+KFT+ G + + + + ++D G G Sbjct: 423 ADLPAEDVSITADPVRLEQVVNNLINNAIKFTSR-GSIRIGYRRRGEKDVELFVEDTGKG 481 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++E I V F +G S QG GLGL I ++I+ + GG+ S++ EG Sbjct: 482 MSEEVIAHVFERFYKGD----SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVC 537 Query: 472 LPNTR 476 LP R Sbjct: 538 LPIGR 542 >gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 832 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 17/243 (6%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N ++ + ++ + + Y+ IH S + LL +IN+ILD Sbjct: 156 EFLANMSHEIRTPMNGVIAMTGLLLETNLNN----EQRSYVETIHSSSESLLTIINDILD 211 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 S+IE+G+ EL +L V E + +L +A EK +++ ++D + V D +R Sbjct: 212 FSKIESGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLR 271 Query: 370 QVILNLLSNAVKFTAIGGRVHVTV-------GWTSGR----GQYISIKDNGPGIAEGEIP 418 QV++NLLSN +KFT G V V V T+ + +++D G GI +I Sbjct: 272 QVLVNLLSNGIKFTNE-GEVFVHVKIHSASPEPTADDATRLQLHFTVRDTGIGIHPTQID 330 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + SF Q + G GLGL I++ ++ GG+ + S L+ G ++P + Sbjct: 331 RLFKSFSQADASTTRQYGGTGLGLAISKRLVELMGGKMWVESTLQRGSTFHFLIPFRPAV 390 Query: 479 NFI 481 Sbjct: 391 AAP 393 >gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei B7210] Length = 988 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 321 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 378 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 379 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 438 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 439 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 491 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 492 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 547 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 548 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 607 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 608 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 666 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 667 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 726 Query: 469 IAILPNTRV 477 LP Sbjct: 727 TVALPLREA 735 >gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM 16795] gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM 16795] Length = 433 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 9/269 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 +++ + + Q K +I + + +++ + N+ K F+A++SHEL+TPL + Sbjct: 170 VYRIKIDPVYLQDSKHAIIGSIINIEDITELVKLE----NMRK-DFVANVSHELKTPLTS 224 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I GF E ++ ++ T ++ I + L LI +IL LS IE G+ +LS + Sbjct: 225 ITGFVETLK--INDDIDKNTRNHFLDIIEKESNRLKGLIEDILLLSSIENGQ-DLSYEKV 281 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L D+ +E + + A KNI I + ++ ++Q+ LNL+ N +K+T Sbjct: 282 KLFDVFKEVCEITEYIASSKNITISYNFEDEDVCIYGFRDNIKQIFLNLIDNGIKYTPKD 341 Query: 387 GRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + V + + + KDNG GI + + + F + A G GLGL I Sbjct: 342 GHIEVVQHYDENRQNIILEFKDNGIGIPKESLNRIFERFYRVDKARSRDIGGTGLGLAIT 401 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ + GG + S L G + I +P Sbjct: 402 KHMVKSLGGNITVESILGIGSDFIVTIPV 430 >gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1666 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 10/238 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R AE+ KS FLA+MSHE+RTP+NAI+G S + + N ++Y+ I +SG Sbjct: 944 RDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTEL----NPRQRDYVKKIQQSG 999 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 QHLL +IN+ILD S+IEAG+ E+ + + L ++ ++ +A K +E+ + + Sbjct: 1000 QHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKASAKGLELLFDLGAGV 1059 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIA 413 + D + QV++N +NAVKFT G + V V G ++D G G+ Sbjct: 1060 PLDLMGDSLRLGQVLINYANNAVKFTEE-GEIVVAVRLLEDLGAEVMLRFEVRDTGIGLT 1118 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 E + + SF Q + G GLGL I++ + GG+ + S EG Sbjct: 1119 EEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVGVDSVPGEGSTFWFT 1176 >gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 463 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 153/308 (49%), Gaps = 13/308 (4%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 ++++L + + + ++L + + T + + + + D++ Sbjct: 168 IIILISLGLCIVFLIFLTGLALTNTIIKPVKEITSAAKAMAQGRFDVRVSKRYDDEIGEL 227 Query: 228 LEVAKSLSDE-TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + ++ E + K+ F+AS+SHELRTPL +I+G+ I + + E Sbjct: 228 GDTLNYMAQEVANHQ-----KMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEE 280 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 KE + I R + L L++E+LD S+ +AG L +S ++L ++++ ++ RA+ K Sbjct: 281 LKEGLDIIERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERK 340 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I + +D L + ADE ++QV +N++ N+ KFT GG + + +G + G I I+ Sbjct: 341 GITMTIDVDEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDI-IGRKNENGVLIRIE 399 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI E ++P V F +GS + G GLGL I I+ H G+ I S + +G Sbjct: 400 DSGCGIPEEDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGT 455 Query: 467 EVIAILPN 474 V ILP Sbjct: 456 RVDVILPV 463 >gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1120 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 14/242 (5%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA+MSHE+RTPLN ILG+++++ P + + + I SG+ Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDR---PERDPEDQRRLELIRVSGEV 638 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N++LD+S+IEAG+ L +L ++ + + +++ A + + + +ID +L + Sbjct: 639 LLTVVNDVLDVSKIEAGQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPA 698 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGP 410 V D +RQV+ NLL+NAVKFT G V +TV + I+D G Sbjct: 699 SVIGDANRLRQVLFNLLNNAVKFTPA-GSVTLTVRYEGSVRDAEGGRREALRFEIRDTGI 757 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + + F Q +I G GLGL I Q ++ GG + S G Sbjct: 758 GIAPSQQHRLFKPFSQVDGSISRRFGGSGLGLAICQRLVTMMGGAIGVESVEGVGSIFWF 817 Query: 471 IL 472 L Sbjct: 818 TL 819 >gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 998 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 91/459 (19%), Positives = 170/459 (37%), Gaps = 47/459 (10%) Query: 26 EYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAA 85 ++ + +V R + + + V ++ + + Sbjct: 167 AERAQPAPGAGLAQAYVIPFVRTATLRGVPVKMLVAVNPGSLFPHYRAVLGAEVTNATLL 226 Query: 86 NLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATL 145 + L G A+G P + Sbjct: 227 DYQGNV-------------------LAGTAAVGFAVNQNYARLPLFADLARNVEHGQFRY 267 Query: 146 LIALSISALSNF-MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + + + NF ++ + + Q + L +LA + +T + Sbjct: 268 TMGGEDAYIVNFQAARKFPLVAMVGMSEMHAVQRWSAGAGNLNWLGALLAAVVLVYTAVL 327 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + + E + + + AE+ N A+ FL+++SHE+RTP+ Sbjct: 328 WRVMR-----------------HREDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPM 370 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA++G S ++ + + +E+ I S L+ +I+EILD SRI+AG+ + + Sbjct: 371 NAVIGMSGLLRETAL----DAQQEEFTVAIEDSANALMVIIDEILDFSRIDAGKLTIEAT 426 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFT 383 L+ +V L ++A+++ + + ++P L V D +RQV+LNL+ NAVKFT Sbjct: 427 DCHLLSLVEGSADALAVKARQQGLRLLCFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFT 486 Query: 384 AIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V + V + + + D G GI I + F Q ++ G G Sbjct: 487 PA-GEVRILVRQVNRQHDLCTVRFEVADTGIGITAPVIALLFNPFVQADGSVTRKYGGTG 545 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 LGL I + ++ GG + SK G LP T V Sbjct: 546 LGLSICKRLVELMGGHIGVDSKPGAGSTFWFELPVTVVA 584 >gi|225390145|ref|ZP_03759869.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme DSM 15981] gi|225043798|gb|EEG54044.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme DSM 15981] Length = 852 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 10/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + ++ R+ A E N AKS FLA+MSH++RTP+NAI+G + + Sbjct: 318 LRYFSITRSQLHELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHI--- 374 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + + + I S +HLL LIN++LDLS+IE+G+ L+ ISL +++ + ++Q Sbjct: 375 DDRKQVQNCLRKITLSSKHLLGLINDVLDLSKIESGKLTLTIEQISLKEVIEGIVSIMQP 434 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--- 397 + + K ++ L+ VW D + Q++LNLLSNA K+T GG + +++ Sbjct: 435 QVKAKKQNFDIHVENILTENVWCDGVRLNQILLNLLSNATKYTPEGGSIQLSLSEEKSPK 494 Query: 398 -GRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 IS +KDNG G++ + + S+ + +G GLG+ I + I+ G Sbjct: 495 GENYVRISIKVKDNGIGMSPDFLKKIYESYSRADGTRVHKTEGAGLGMAITKYIVDAMEG 554 Query: 455 QFLIRSKLREGVEVIAIL 472 I+S+ +G E + Sbjct: 555 TIDIQSEPDKGTEFFLMF 572 >gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 873 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 5/328 (1%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 +++ ++ VF + + I ++ + A + I Y Sbjct: 393 TLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQSAIIGY 452 Query: 206 HLFKSNVKIL-SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++ +AE+ L L++ + AE+ NLAKS FL+SMSHELRTPL Sbjct: 453 LLIGTDNTARKQIEAERTTLHEALQLKNVELERATFVAEKANLAKSDFLSSMSHELRTPL 512 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 AILGF+++IE T P + K+ I I ++G +LL LINE+LDL+ IE+G+ LS Sbjct: 513 GAILGFAQLIESGT--PAPTASQKKSIDQILKAGWYLLELINEVLDLALIESGKLALSLE 570 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L D++ EC M++ +AQ + I + K V D ++Q+++NLLSNA+K+ Sbjct: 571 PVLLADVMHECEAMIEPQAQSREINVIFKQPEVPYCVRGDRTRVKQIVINLLSNAIKYNR 630 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + G V V T IS++D G G+ + E+ + F + + E+G G+GL + Sbjct: 631 VNGTVTVECSITPHDTVRISVQDTGAGLTDEELTQLFQPFNRLGQ--NTKEEGTGIGLVV 688 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + G+ + S + EG L Sbjct: 689 CKRLTDLMKGKIGVESIVGEGSTFWIEL 716 >gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 610 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 103/433 (23%), Positives = 183/433 (42%), Gaps = 19/433 (4%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 + L + + + + +W T +++ ++ R Sbjct: 163 AASSATLAAFGITSAALYASGLAYGAVWLARTNGALLNVEEERYRLLARNMSDVISRHNR 222 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + + P + + A + + A+ + Sbjct: 223 N-------------GAVRFISPAAENLLGTPVARLAEHGLFDRVHVADRPAYLKAMSDAA 269 Query: 168 FPVVVALS---TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN--VKILSCQAEKD 222 + ++ A + +L + + Sbjct: 270 RGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTAASNAGETEVVAVM 329 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E ++ + D+ R A+ + AKSRFLA+MSHELRTPLNAI+GFS++I + + L Sbjct: 330 RDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLML 389 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E KEY I+ SGQHLL+++N ILD+S++E+G +E+ + + C +L L+ Sbjct: 390 GPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALK 449 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A++ I++ + +L V D + +Q++LNL+SNA+KFT GG V V+ G Sbjct: 450 ARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTRLV 508 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D G GIAE ++ + F Q + +G GLGL I +S++ HGG+ ++S++ Sbjct: 509 LRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQI 568 Query: 463 REGVEVIAILPNT 475 G V LP Sbjct: 569 DCGTTVTVSLPLA 581 >gi|83754490|pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +R + + K+ F+A++SHELRTPL AI ++E I +G L+ T KE++ Sbjct: 3 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 61 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I HL NL+NE+LD SR+E +++ + L D+V + ++ A N+ + Sbjct: 62 EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 121 Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407 + + P + D +RQV+LNLL+N VK++ V V + G I ++D Sbjct: 122 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 180 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG GI + + F + ++ G GLGL I + I+ HGG+ + S++ +G Sbjct: 181 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 240 Query: 468 VIAILPNTRVLN 479 +P R Sbjct: 241 FFVWIPKDRAGE 252 >gi|320038754|gb|EFW20689.1| sensor histidine kinase/response regulator [Coccidioides posadasii str. Silveira] Length = 2340 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E R EE Sbjct: 1819 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1878 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1879 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1934 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + E + L+ +++ +E + +D V D Sbjct: 1935 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1994 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V I + D G GI+ + + Sbjct: 1995 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2053 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461 F Q + + G GLGL I ++I+ GG+ +RS+ Sbjct: 2054 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2095 >gi|317486463|ref|ZP_07945288.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922266|gb|EFV43527.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 781 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 9/262 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 S + + + + + ++ + A+ N K+ FL+ MSH++RTP+NAI+G + + Sbjct: 234 SLGIDVTETVERQRLQQQALEDACRVAKHANQGKTEFLSRMSHDIRTPMNAIVGMTAIAG 293 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++ + I+ S +HLLNLINE+LD+S+IE+GR ++ + SL ++V+ Sbjct: 294 AHI---EDTQKVRDCLKKINTSSKHLLNLINEVLDMSKIESGRLDVRANDFSLSNLVQNV 350 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + EK + I ++ DE ++QV++N+LSNAVK+T GGR+H ++ Sbjct: 351 FEVCRPMIIEKGHHLTMNISKVRHEGLYGDESRLQQVLVNILSNAVKYTPAGGRLHFSIE 410 Query: 395 WTSGRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + Y + +DNG G++E + + F + + S QG GLG+ I+Q+I+ Sbjct: 411 EKPTHAEGASVFYFTFEDNGIGMSEEFVGRIFEPFSRAEDSRISKIQGTGLGMAISQNII 470 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 G+ + S L +G Sbjct: 471 HMMNGEITVDSTLGKGSRFTVS 492 >gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 775 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 6/280 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 IL E + + +AE N +K FLA+MSHELRTPLNAI+GFS+ Sbjct: 384 DILHIFLEILKITLINREKEHKLTIFADKAESANRSKDMFLANMSHELRTPLNAIIGFSQ 443 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ P N + YI I +G +LLNL+N ILD +++EAG+ L DI Sbjct: 444 ILQTREEIPQN---MRSYIEKISIAGNNLLNLVNTILDFAKLEAGKISYHPRMTLLSDIA 500 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +E I++ A+ KNI + D SL +++ D + M+Q ++N+LSNA+KFT G V + Sbjct: 501 KEISIIISPLAEAKNITLTMPADISL-ALFIDAQLMKQSLINILSNAIKFTPNDGEVIFS 559 Query: 393 VGWTSGRGQYI-SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA- 450 + + R QY+ SI DNG G+ + I + T F Q +++A +G GLGL I + I+ Sbjct: 560 ITFDKQRNQYVLSICDNGVGMDKESISQLFTPFTQIDNHLQTASKGTGLGLVITKKIVED 619 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 HGG+ + S + EG +P L I +++ Sbjct: 620 LHGGKIWVESSVGEGSCFYIAVPIQTELTKIEIFASKNSD 659 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 17/283 (6%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRAEEENLAKSRFLASMSHELRTPL 264 + E+ +L +D RK+ E + F++ +SHELRTPL Sbjct: 237 RTKTGQIGTALLSIERIELAGVPCALNIANDITERKQLE------NEFISLVSHELRTPL 290 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 +++G +++ +G L + + + + L+ LIN+ILDL RI+AG+ + + Sbjct: 291 TSLMGALDLLGTGQLGNLT-PKGQHVLRIATTNTERLIRLINDILDLERIKAGKITMQKV 349 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 +++ + LQ A + N+++ +P ++ AD + Q + NLLSNA+KF+ Sbjct: 350 RCDAAELITQAAEALQEMAHQANLQLVV--EPIAVALIADPDRILQTLTNLLSNAIKFSE 407 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GRV + G G ++ ++D G GI ++ T+ F Q + + G GLGL I Sbjct: 408 PQGRVWLR-GQVEGEILHLQVQDQGRGIPADKLQTIFERFQQVDASDSRKKGGTGLGLSI 466 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 +SI+ HGG+ S L EG LP PE +HE Sbjct: 467 CRSIVNLHGGKIWAESVLGEGSTFHIHLPLN------PEADHE 503 >gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 645 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 94/358 (26%), Positives = 156/358 (43%), Gaps = 22/358 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L +++ A+ LS + + +AI Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + +TR+ A Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-- 360 +IN+ILD SRIE ++ +L ++V A ++N+ + I P L + Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLETMN 376 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416 V D +RQ+++NL+ NA+KFT G+V V W + + ++D+G GI Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ +F Q +I G GLGLPIA+++ GG SK G +P Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESKEGSGSLFTLQIPL 493 >gi|291537791|emb|CBL10902.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 437 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 12/291 (4%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243 + + + +Y L + + + A+ L+ E EV + + S ++ + Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIEKMADNIILVDETEVYEEMRPFISMIKKQHMD 212 Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 N + F A++SHEL+TPL AI G++E+I G + + +IH+S + L Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +LIN+I+ LS ++ +L + L D+ +CI +Q++A + + + + + + Sbjct: 270 QSLINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + +++ NL SNAV++ GG V + + R I +KD G GI + + V Sbjct: 328 NGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + + G GLGL I + I+A H Q + S++ G E+ + Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437 >gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10] gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10] Length = 553 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 145/319 (45%), Gaps = 15/319 (4%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + G +AT + + L + L A E Sbjct: 92 LNSQILRDSPAALMEGFIATRNGDYAGVGTTLELFRFIAQESADKNHRLSALAEQ----L 147 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 R A + AKS FLA+MSHE+RTPLN +LG +++++ T+ + E++ I Sbjct: 148 GRARLEALAASKAKSDFLATMSHEIRTPLNGVLGVTQLLQATTL----DAEQAEFVRVID 203 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+ LL L+N+ILDLS+IEAG+ EL + +VR+ + +A+EK I + D Sbjct: 204 DSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIEAD 263 Query: 356 -PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGP 410 + D ++Q++ NL+SN +KFT G V V + + + + + D G Sbjct: 264 CDEDAQYEGDPVRIKQLLFNLISNGIKFT-QSGSVAVRMQFLPLGRRRNVMRVEVVDTGC 322 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + + ++F Q +A G GLGL I + + GG + S+ EG + Sbjct: 323 GIPDTALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTSRPGEGSKFWF 382 Query: 471 ILPNTRVLNFIPEDNHEST 489 +P V P+ +T Sbjct: 383 DIPLKSV-TTAPQTVSAAT 400 >gi|326389794|ref|ZP_08211358.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325994062|gb|EGD52490.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 457 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 12/312 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDD 223 L F + A + +S + + + + + + K L E D+ Sbjct: 157 LLFILMFFADAAGIFVSF-IAGYFVTKRALRPVDYMAKEVREIDAHGLNKRLKIYGEDDE 215 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L + + D R E+ ++ F++ SHELRTP++ I G+ +++ + G + Sbjct: 216 LTRLAKTFNDMLD----RLEDSFKRQNMFVSDASHELRTPISVIKGYIDML--DRWGKED 269 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E I I R + +LI +L L++ + +L++ +L D+++E +++ Sbjct: 270 KAVLQEAIEAIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLN 329 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + KNI + + D ++ AD+K ++++I L NA K+T+ G + + VG + + YI Sbjct: 330 ESKNIVVKGQND---INITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSK-AYI 385 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 IKD+G GI + +IP + F + A G GLGL IA+ I+ H G ++S++ Sbjct: 386 KIKDDGIGIPQEDIPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVG 445 Query: 464 EGVEVIAILPNT 475 +G E LP Sbjct: 446 KGSEFTITLPLR 457 >gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 790 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 11/272 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E DL +LE ++ + AE N KS FLA MSH++RTP+NAI G + Sbjct: 247 TELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLISIARDCV 306 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P+ +E + + S LL+LIN+ILD+S+IE+GR EL + S + + + + Sbjct: 307 NDPV---KIRECLNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFIDDIVSA 363 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 + +AQ+K I +I ++ ++ D ++Q++ NLLSNA+KFT GGRV + V Sbjct: 364 VYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQVEEGQ 423 Query: 396 --TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ DNG G+ I V F Q + + G GLGL I S + Sbjct: 424 RIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQ-DVRHRENRGGSGLGLAIVHSYVQLMN 482 Query: 454 GQFLIRSKLREGVEVI--AILPNTRVLNFIPE 483 G+ + S+ +G + L L P+ Sbjct: 483 GRVDVESEPGKGSRFVAQVWLDPVEALPEQPD 514 >gi|206601972|gb|EDZ38454.1| Putative multi-sensor hybrid histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 849 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 160/401 (39%), Gaps = 20/401 (4%) Query: 80 LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-PGTWTPEYLT 138 + V + + G +L L + L + Sbjct: 35 VIVGLLASFYLYSLHHVPGVSGIPLSAHSMILPVNAYTILLLGTIYLFPGYHPIRIIFGI 94 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + +++ ++++ + L + +A L+ Sbjct: 95 AGDLSLVMLVMALTGVKGLPLGVVDLWVI--------MGNGFRFGPRYLGVATGLSAVEF 146 Query: 199 FFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 Y ++ + + Q L + V + ++ + A N +KSRFLA+MS Sbjct: 147 IGVYRVNPWWQQHTVLFDTQLIGMIVLPLYMAVLLTKLEKLIEAANAANQSKSRFLANMS 206 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN I+G SE++ + + E + + S +HL ++I +ILD SR+EAG Sbjct: 207 HELRTPLNGIMGLSELLREQ-----ASPRQNELLNTLQGSARHLSDIIGKILDFSRLEAG 261 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R +S + +V E + L A++KN+ + +D S + D ++Q++ NLL Sbjct: 262 RMTVSLVTFDVGQVVAETVSALLPLARQKNLPLTVLMDARFPSSLRGDPFHLKQILTNLL 321 Query: 377 SNAVKFTAIGGRV-HVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NA+KFT G V +T TS + D G GI+E E + SF QG ++ Sbjct: 322 GNAIKFTESGEVVLTITPILTSDERQLSVRFEVSDTGIGISEEEKNRIFESFSQGDDSVT 381 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + ++ G+ S +G +P Sbjct: 382 KRYGGTGLGLAITRQLVDLEKGKLGFLSHAGKGSIFWCTIP 422 >gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613] Length = 617 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 153/288 (53%), Gaps = 5/288 (1%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + Y S ++ ++ Q + + L ++E L +E+R E N + FLA++S Sbjct: 311 YIIYNNRPAILSILRDITSQKQVEKLQKDVEKNIELLNESR----EYNKLITDFLANISQ 366 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 EL+TPLN I ++++L + + ++YI I ++ L+ LIN +LD +++++G Sbjct: 367 ELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGY 426 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +L+ +++++V E + + A+ KNI I D + D + +++LNLLSN Sbjct: 427 LKLNLVNCNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSN 486 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A+KFT GG ++VTV IS+KD G GI E +I + F Q ++ ++G Sbjct: 487 AIKFTGSGGNIYVTVK-DFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGS 545 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G+GL + +S + H G I+S++ +G E I +P V + ++N+ Sbjct: 546 GIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINIPVKLVKENLEKENN 593 >gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] Length = 803 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTPL+A++G+SE++ E E + + I S +HLL LIN++ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESSARHLLGLINDV 346 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAGR L+ ++ ++ + Q +K + L ++ D+ + Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQSKL 406 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFG 425 RQ ++NL+ NA KF+ G + + V G S+ D G G+ + +I + F Sbjct: 407 RQSLINLIGNAAKFS-EDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFS 465 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL I ++ + GG + S G LP Sbjct: 466 QADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513 >gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 692 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 21/303 (6%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----- 243 + L ++ L + N ++ E+ L R+R E Sbjct: 244 MGEQLMREVAAHRVTQEELARLNAELEERVRERTVRYKLLNQKLRAEIGERQRIEVELQA 303 Query: 244 ------EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 AKS FLA+ SHELRTP++ I+ ++++ +G +E I Sbjct: 304 AQARAEAAARAKSDFLAAASHELRTPMHGIISMTDLLLESDLGA----EQRELAAIIGYC 359 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ +L+LIN ILD+S+IEAGR EL L ++ + M + + K++ + IDP Sbjct: 360 GETMLSLINNILDISKIEAGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPE 419 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGI 412 + + D + QV+ NL+ N++KFT G++ + V + G + D G G+ Sbjct: 420 VPAQLEGDPVRLAQVLTNLVGNSLKFTPR-GQIAIRVHPAAQGGDDLRLRFEVVDTGIGM 478 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A + SF Q + G GLGL I++ ++ GGQ + S+L +G +L Sbjct: 479 APETTGRLFQSFFQADTSTTRKYGGTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVL 538 Query: 473 PNT 475 P Sbjct: 539 PLK 541 >gi|90421196|ref|ZP_01229097.1| two-component response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334573|gb|EAS48356.1| two-component response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 1127 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 18/360 (5%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 L A L + S +V+A ++ Sbjct: 560 LAAFADSARGHYLAIFLTLIGFSAAALSLIYLQATLTRSADPSTAAMVLAQVFVILI--- 616 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRA 242 + S+ + + + ++ Q I + + +++A Sbjct: 617 --------IFIGIASWVFVLAHESRRVALEETRHQTGLLTREIEAHRITDAELQRAKEKA 668 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E +LAK+RF+ MSHELRTPLN++LGF+++++ +T P E +E + I RSG+HL Sbjct: 669 EAASLAKTRFVVGMSHELRTPLNSLLGFAQILDKDTAIP---EKRREGVKVIRRSGEHLA 725 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 LI+ +LD+SRIEAG+ E+ L ++ + + M +L+A I +++ +L V Sbjct: 726 GLIDGLLDISRIEAGKLEIYRDEFGLGPLLSQIVEMFRLQAGNAGIGFVYRVEGALPDIV 785 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D K RQ+++NLLSNA+KFT G+V +TV + + +I D GPGIAE + V Sbjct: 786 RGDAKRTRQILINLLSNAIKFTRE-GQVTLTVRYR-SQIAEFAISDTGPGIAEEHVERVF 843 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + G+GLGL I + + GG + S L G L V+ + Sbjct: 844 EPFERIEDGAARPVPGMGLGLTITKLLAEILGGDVRLASTLGVGSTFTVRLMLATVVAPV 903 >gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1172 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 134/290 (46%), Gaps = 3/290 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ D + + Sbjct: 555 ISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ + A GG + S +G +LP V Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723 >gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1838 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 141/347 (40%), Gaps = 24/347 (6%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +++ F + FL + + I + + L A L Sbjct: 1024 VIELASFEMFSATHLAFLEQLTESIGIVLNTIQATMRTETLLTQSQGMAQ-ELQSQQEEL 1082 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE--ENLA-----KSRFLASMSHEL 260 ++N ++ D E+E + R+ EE LA KS FLA+MSHEL Sbjct: 1083 RQTNEELEEKARLLADQNREVEHKNREVETARQALEEKAAQLALTSKYKSEFLANMSHEL 1142 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN++L + + L+ E Y I SG LLNLIN+ILDLS+IE+G Sbjct: 1143 RTPLNSLLLLANQLRDNPERNLS-EQQVAYARTIFASGNDLLNLINDILDLSKIESGTVT 1201 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 + + L + A +K + D L S+ +DEK + Q++ NLLSNA Sbjct: 1202 ADTADVPLRAVRESVESTFTHMAADKGVAFALDFDARLPGSLVSDEKRLLQILKNLLSNA 1261 Query: 380 VKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLTSFGQ 426 KFT G V +TV + + D G GIA + + +F Q Sbjct: 1262 FKFTER-GEVRLTVTPATSGWSSDHPALSRAPGVIAFRVSDTGIGIAPDKQRVIFEAFQQ 1320 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ + GG+ ++S G LP Sbjct: 1321 ADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGTGSTFTLYLP 1367 >gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 656 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + + AE AK+ FL+ MSHE+RTPLN I+G + +++L+ Sbjct: 258 ITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPLNGIIGIANLLKLKHTM---- 313 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S HLL LIN+ILDL++IE+ + EL + +++ ++VR + A+ Sbjct: 314 -DQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAEVNIFELVRNIKNQFKSLAE 372 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 K I + ID + + AD + Q++ NL+SNA+KFT G V +T+ + Sbjct: 373 AKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFT-ESGAVTITLSLVALTANKA 431 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + S+KD G GI E T+ SF Q + G GLGL I Q ++ H G+ L++ Sbjct: 432 NVHFSVKDTGMGIPEELHETIFESFKQVQQDVHRKHTGTGLGLAITQKLVELHDGRILLK 491 Query: 460 SKLREGVEVIAIL 472 S +G E L Sbjct: 492 STAGQGTEFYFEL 504 >gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1023 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 130/278 (46%), Gaps = 34/278 (12%) Query: 225 IAELEVAKSLSDETRKRAEEEN--------------LAKSRFLASMSHELRTPLNAILGF 270 I + + + + + N AKS FLA MSHE+RTP+NA+LG Sbjct: 302 ITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEIRTPMNAMLGM 361 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +E++ G + +++I I G LL +IN+ILD S+IE+ EL S L + Sbjct: 362 AELL----DGTELSPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLELEISRFDLYE 417 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPS-----LSSVWADEKGMRQVILNLLSNAVKFTAI 385 + + + + +A+EK + + ++P + D ++Q++ NL+SN++KFT Sbjct: 418 CIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLVSNSIKFTQE 477 Query: 386 GG-RVHVTVGWTSGRGQ----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 G + V VG + + + D G GIAE +IP + F Q ++ Sbjct: 478 GEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQVDASMTRR 537 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I++ ++ GG+ + SK+ G + Sbjct: 538 YGGTGLGLAISKQLVELMGGEMGMVSKVGSGSTFHFCI 575 >gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 934 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 3/290 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 198 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 257 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 258 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 316 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ ++ + Q A EK + I ++ + D + + Sbjct: 317 ISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLAFTVDIQTGAPTMLFTDRQRLE 376 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 377 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 435 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ + A GG + S +G +LP V Sbjct: 436 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVKQ 485 >gi|255941286|ref|XP_002561412.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255] gi|211586035|emb|CAP93776.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1025 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 15/281 (5%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +I+ L + + R+ AE N +KS FLA+MSHE+RTP+N I+G S Sbjct: 482 EMDDLKQKINKMISSLRDSIQRNTAAREAAELANRSKSDFLANMSHEIRTPMNGIIGLSS 541 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + ++ + +H LL +I++ILD+S+IEA + ++ SL V Sbjct: 542 LALDTD---DLQAPVRDTLNMVHNLAISLLTIIDDILDISKIEANHMIIEKTPFSLGATV 598 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + L + EK + + +D + + D +RQV+LNL+ NA+KFT G + V Sbjct: 599 FSVLKALSVETNEKALGLVYTVDGEVPDYLIGDAYRLRQVMLNLVGNAIKFT-DHGEIRV 657 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 TV S+ D G GI E +I + F Q ++ G GLGL I Sbjct: 658 TVKHAQDDKCASDETAFQFSVSDPGIGIDESKIGLIFDKFQQADGSMTRRFGGTGLGLAI 717 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 ++ +++ GG + S + EG RV P + Sbjct: 718 SKRLVSLMGGDIWVTSNVGEGSTFSFT---CRVKLAQPPPS 755 >gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 866 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 159/390 (40%), Gaps = 28/390 (7%) Query: 97 DIKIGEVYVWRIWLLVGQIAIGLCW----TLLTLVEPGTWTPEYL----TIYKSATLLIA 148 + R ++ + GL + L + ++A LL++ Sbjct: 347 RTRDLAESEARTRAIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMS 406 Query: 149 LSISALSNFMLPYAVFLSFFPVVVAL--STQAIMSMHVLDISLAGMLATALSFFTYITYH 206 +A ++ P++ + +++A A Sbjct: 407 AEDAAGHAEPFGLHLWDGRSPLLNGTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARR 466 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 LF V+ +S Q + S + + AE N AKS FLA MSHELRTPLN Sbjct: 467 LFTGVVRDISDQIRHE----------SDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNG 516 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG ++++ + + + Y I S + LL +IN+ILDLS+IEAG +L Sbjct: 517 VLGMADLLCDTPL----DAEQRRYTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPF 572 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385 ++ +++ A++K I + I+ + + DE +RQ++LNL +N VKFT Sbjct: 573 DPATLLEGVRTLMEGPARDKAIALRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEK 632 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + + +G ++D G GI + + T+ F Q S + G GLGL I Sbjct: 633 -GSLTLRLKAGTGGALRFEVEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSIC 691 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAI--LP 473 + ++ GG+ S G LP Sbjct: 692 RRLVGLMGGRLGFDSTPGVGSLFWFEVDLP 721 >gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1127 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 7/366 (1%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185 EP PE SA L + S + A + + A I++ + Sbjct: 624 FEPSPIGPEGPPCALSAHLGRQVICSDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 683 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K FLA++SHELRTPLNAILG+S +++ + P + I RS + +I Sbjct: 744 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 800 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKIALELDAPCDGELWFFGD 860 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT GG V VT+ + ++D G GIA +P V F Sbjct: 861 AGRLQQVLTNLLSNALKFTPAGGTVRVTMD-VEDERLRLCVQDTGIGIAADFLPHVFDRF 919 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPE 483 Q G+GLGL I++ ++ HGG S +G +LP ++ + Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRP 979 Query: 484 DNHEST 489 + ++T Sbjct: 980 ASADTT 985 >gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1049 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA MSHE+RTP+N+ILG ++++ + + + + I R+G L+ +IN+I Sbjct: 548 KSAFLAVMSHEIRTPMNSILGMTDLLMEHAL----DAEQRHALQAIARAGDALMIIINDI 603 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKG 367 LDLS+IEA R EL L +++ ML LRAQEK +++ + L W D+ Sbjct: 604 LDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQVR 663 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ+++NL+ NA+KFT G + V + G S+ D+G GI + + SF QG Sbjct: 664 LRQILVNLIGNAIKFTHQ-GSIEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFNQG 722 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 ++ G GLGL I+Q ++ GG + S+ +G +P V Sbjct: 723 DSSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIPMAPV 772 >gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] Length = 715 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 17/286 (5%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKR--------AEEE------NLAKSRFLASMSHE 259 + Q+E ++ A+LE S +E R A++ + KS F+A+MSHE Sbjct: 1 MREQQSELEEQNAQLEQQTSQLEEQRDALAASRQQLADQAGDLARESRYKSEFVANMSHE 60 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNA+L + ++ L+ E + + I SG+ LL LIN+ILDLSRIEAG+ Sbjct: 61 LRTPLNALLIMARLLSENRPHNLSPEQIQ-WAETIESSGRDLLGLINDILDLSRIEAGKV 119 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 ++ D+ + ++A E +++ ++ + + D + Q++ N LSNA Sbjct: 120 DVDPEVTQPKDVAARMMRAFAVQASESGLKLVSEVADDVPEITTDVGKLEQILRNFLSNA 179 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +KFT G V ++V + S+KD G GIA + V +F Q +I G G Sbjct: 180 LKFTQK-GSVTLSVARSGAETVTFSVKDTGIGIAAEQHDAVFEAFRQADGSISRRFGGTG 238 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL I++ + GG ++ S +G I LP + +PE + Sbjct: 239 LGLSISRDLAGILGGDVMLESTPGKGSTFILTLPL-HLTAPVPEAD 283 >gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 565 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 90/430 (20%), Positives = 168/430 (39%), Gaps = 36/430 (8%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R + LV + + W ++ + L + + + Sbjct: 20 RRGMAGRLVMTTLVGVLLAYAFGPYALLPWIVVNAGLEGLLLLIKAQF---RPASERRFP 76 Query: 106 WRIWLLVGQIAIGLCWTLLTLVEP---GTWTPEYLTIYKSATLLIALSISALSNFMLPYA 162 L G +A + W++ + + L+ L + +S +L Sbjct: 77 MIRRLGPG-MAFSVTWSITACLLWIHGSAGLKFAALMVMFGLLIEGLKYAVVSRALLLAL 135 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 F ++ A T + + ++ + F+ L ++N + L + Sbjct: 136 APPPFAALIFAAVTSQHWQGW--EYVVLAVVMVGVLSFSMDAVRLLRANAQALEEAQAEA 193 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + +KS F+A MSHELRTP+N +LG + + + Sbjct: 194 QEA--------------------SRSKSAFVAMMSHELRTPMNGVLGLAHALSTTRLDV- 232 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EY+ I +SG L+ ++N+ILDLS+IEAG+ EL + + + + ++ Sbjct: 233 ---RQAEYVDMIIQSGDGLMTILNDILDLSKIEAGKLELEIAPFDIRALAGQIRLLWSET 289 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+ K +E+ ++DP+ + D +RQ+++NL+SNA+KFT GRV + V + Sbjct: 290 ARGKGVELALEVDPATPAWLLGDAARVRQILMNLVSNALKFTLA-GRVVIGVAP-AEGEI 347 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 +S+ D G G+ + + F QG + G GLGL I + + GG + S+ Sbjct: 348 VLSVTDTGVGLTAEQRARLFAPFAQGDRSTARRFGGTGLGLAICRHLAELMGGAIGVESE 407 Query: 462 LREGVEVIAI 471 G Sbjct: 408 PGVGSTFTVR 417 >gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 533 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + + ++ + Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QVI N ++NA+KFT G++ + + Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA ++ V F + S +G GLGL I +SI+ + GG S++ Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGAESEIG 518 Query: 464 EGVEVIAILPNT 475 G P Sbjct: 519 VGSRFWFTHPLR 530 >gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 533 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + + ++ + Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QVI N ++NA+KFT G++ + + Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA ++ V F + S +G GLGL I +SI+ + GG S++ Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGAESEIG 518 Query: 464 EGVEVIAILPNT 475 G P Sbjct: 519 VGSRFWFTHPLR 530 >gi|88860218|ref|ZP_01134856.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817416|gb|EAR27233.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 915 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 77/267 (28%), Positives = 123/267 (46%), Gaps = 13/267 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + +L A +E + + +AE + KS FLA MSHELRTP+NAI+G E++ Sbjct: 367 QLKKLNLELEARVEERTAELTQAITQAELASKIKSEFLAMMSHELRTPMNAIIGSLELLS 426 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 L +E I S +L+N++N+ILD+++IE+G+ E+ ++ Sbjct: 427 LSINAHEESE----LINTASMSAHNLVNILNDILDINKIESGKLEIETHDFDHQQLIYNI 482 Query: 336 IIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR----VH 390 + + A + + + D V DE +RQ+I+N++SNAVKFTA + V Sbjct: 483 VKTFESTASNQGVTLIIHEDTKMPPIVSGDEIRVRQIIMNIISNAVKFTAGNDKEIKIVT 542 Query: 391 VTVGWTSGRGQYISIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + W G I D G GI + + T F Q + G GLGL I+ Sbjct: 543 FCIQWRQIGGCLFEIIYEIIDTGIGINQETQKRLFTPFIQAEKSTTRKFGGTGLGLAISG 602 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 + GG ++S + G + LP Sbjct: 603 KLADMMGGSIELKSHVGIGSKFTIKLP 629 >gi|332707304|ref|ZP_08427357.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354038|gb|EGJ33525.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 876 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 149/299 (49%), Gaps = 30/299 (10%) Query: 215 LSCQAEKDDLIAELEVAKSLSD---ETR--------KRAEEENLAKSRFLASMSHELRTP 263 L A + + A+L A +L + E R + A++ N AKS+FLA+MSHELRTP Sbjct: 361 LVYLAGRRRIEAQLRKANALLEIRVEERTAEFKAAKEAADQANHAKSQFLANMSHELRTP 420 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG++++++ P K+ I I++ G +LL+LIN+ILDLS+IEA + EL Sbjct: 421 LNGVLGYAQILQR---DPQITAQQKDQINLIYQCGNYLLHLINDILDLSKIEARKMELFP 477 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + L + E + M +++AQ+K I L + AD K +RQV++NLL NA+KF Sbjct: 478 REVHLPSFLMEVVEMCRVKAQQKEIAFIYLPSSHLPDGILADAKRLRQVLINLLGNAIKF 537 Query: 383 TAIGGRVHVTVGWTSGR-----------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 T GG V V S IKD G G+ ++ + F Q Sbjct: 538 TDHGG-VTFKVEVISKHPRLPTLQSPLVRLRFIIKDTGIGMTPEQLEKIFLPFEQVGDVD 596 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDNHES 488 EQG GLGL I+Q+I+ G + S +G LP T L + + ++ Sbjct: 597 HR-EQGTGLGLAISQTIIKLMGSAINVESTYGKGSMFSIDLDLPITTALIASKQASTKT 654 >gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1] gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains [Aromatoleum aromaticum EbN1] Length = 1205 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 117/495 (23%), Positives = 202/495 (40%), Gaps = 21/495 (4%) Query: 7 NKEKDVGLLISPTGDHLGLEY---PSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63 + +++ + + + + S + L L A +G Sbjct: 285 HSFRNMTSSLRQARVQARDADWLKSGLNELNSVMRGEPATSEIADKVLAYLVEYLKAGVG 344 Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + + SL + +LG + + IG+ R + + + Sbjct: 345 ALYLLDERAEELSLAASYAFTRRKNLGDRFRLGEGLIGQAARERKPICLANVPADYLPIA 404 Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 L E L + A L+ AL I S FL VA+ +S Sbjct: 405 SALGESVPKVVLALPLLHGARLIGALEIGTFSEMTDIQLEFLGLAQEAVAIGLSVSLSRQ 464 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILS----CQAEKDDLIAELEVAKSLSDETR 239 + L A L +SN ++ + +++++ A+ K +++ R Sbjct: 465 RMAELLEETQQQAE-ELRVQQEELQQSNEELEERAQMLETQRENIRAKNREIKLAAEDLR 523 Query: 240 KRAEEENL---AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 +A+E KS+FLA+MSHELRTPLN+++ S ++ G L+ E E+ IH Sbjct: 524 VKAQELERVSAYKSQFLANMSHELRTPLNSLMILSSLLMQNKDGNLS-EKQVEFASTIHS 582 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 +G LL+LIN+ILDLS+IEAGR EL + I++ D+ + Q +A++K I +++ Sbjct: 583 AGTDLLDLINDILDLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEA 642 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDN 408 + D + + Q++ NL+SNA+KFT G V + V + SG ++ D Sbjct: 643 DVPRTFHGDTQRVHQILKNLVSNALKFT-EHGEVRLCVTFPSGSANPLPVPAIAFAVSDT 701 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + +F Q +I G GLGL I+ + G + S +G Sbjct: 702 GIGIPADKQQGIFDAFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSESKGSVF 761 Query: 469 IAILPNTRVLNFIPE 483 + LP + PE Sbjct: 762 VLYLPLCVESDKAPE 776 >gi|323498876|ref|ZP_08103859.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315988|gb|EGA69016.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 710 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 6/254 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L L+ ++ R +AE+ AK+RFLA+MSHE+RTPLNA++G S+ + Sbjct: 213 KLSQTLKERSDNLEQARLQAEQSAEAKARFLANMSHEMRTPLNAVIGLSQ----KEYYKA 268 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E K + I+ SGQHLL LIN +LDLS+IE G+ +L E +++ + Sbjct: 269 CDEQTKNFASLINSSGQHLLKLINSVLDLSKIEQGKIQLEEERFYCSELIDASRTIFIEM 328 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQ 401 ++ F + + AD+ + QVI NL NAVKFT G V V + + Sbjct: 329 SKPDVDVFFSTEIDADYQLCADKTKLLQVINNLSFNAVKFT-SYGYVEVKIAVDPLMKQL 387 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++I D G G+ ++ V F Q +I G GLGL I QS++ GG+ + S+ Sbjct: 388 VLTINDTGIGMTPEQLDKVFNEFTQADDSITRQYGGTGLGLSICQSLVTLMGGKISVESE 447 Query: 462 LREGVEVIAILPNT 475 ++G + +P Sbjct: 448 TQKGTSFVVSMPIK 461 >gi|317485692|ref|ZP_07944563.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923057|gb|EFV44272.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 1132 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 15/303 (4%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 +L I + + + F+ + + K L+ + EK +L+ + + Sbjct: 297 FWTSLLGIEVVLSVLLLIIFWNFQLRRKVEERTKRLAAELEKSAKAEDLQRLNTELQQAM 356 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K A+ AKSRFLA++SHE+RTPL+ I+ F+E+ NN + + I Sbjct: 357 KAADAATEAKSRFLANISHEIRTPLHGIISFTEL-----AYLKNNPLPRNHQRTILDLSY 411 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL+++N+ LD S+IEAG + + L +++ M + + +E IDPS Sbjct: 412 ALLDIVNDTLDFSKIEAGEMDTDTAPFMLDEVILRVCDMTMRGSMARELECLIDIDPSTP 471 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNG 409 ++ D ++Q++ NL+ NAVKFT GGR+H+ V + + D G Sbjct: 472 LALLGDAGRLQQILTNLMGNAVKFTPPGGRIHLQVRHGGNLHLSENQNKAQFLFFVHDTG 531 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA ++P + F Q ++ G GLGL IA+ ++ N GG+ + S++ +G Sbjct: 532 VGIAPDQLPQLFQPFKQADSSLTRRHGGTGLGLSIARYMVENMGGEIWVESEVGQGSTFA 591 Query: 470 AIL 472 + Sbjct: 592 FSI 594 >gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1424 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 102/421 (24%), Positives = 167/421 (39%), Gaps = 31/421 (7%) Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + R + V ++ L + L I +L + ++++S F + Sbjct: 704 QAARSRRTITVDELPADYVTISSGLGRTAPTSLVVLPITVEEQVLGVIELASVSRFTQIH 763 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYHLFKSNVKIL 215 FL + ++ I++ D L A L +SN ++ Sbjct: 764 QDFLGQLTETIGVNVNTILANARTDELLGESQRLADELRVRSEELQVRQEELQRSNAELE 823 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASMSHELRTPLNAIL 268 ++E ++ R+ E + KS FLA+MSHELRTPLN++L Sbjct: 824 EKATLLATQNRDIEAKNLQIEQARQELEDRAKQLSSASKYKSEFLANMSHELRTPLNSLL 883 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++++ L EY G IH +G LL LIN+ILDLS++EAG+ +++ + L Sbjct: 884 ILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPL 942 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + +K + P + + D+ +RQV+ NLLSNAVKFT GG Sbjct: 943 RRLLDYVEATFRPMTTQKGLTFAITSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGG 1002 Query: 388 RVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 V + + S ++D G GI E ++ T+ +F Q Sbjct: 1003 -VTLLIEPASDAEVPEPVHRGGPVVAFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYG 1061 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV----LNFIPEDNHESTQYK 492 G GLGL I + I GG + S +G LP TR L P + + Sbjct: 1062 GTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLPVTRSDFEDLTAAPRAEESQSDAR 1121 Query: 493 C 493 Sbjct: 1122 A 1122 >gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 1014 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1791 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 8/249 (3%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N ++G + + E EY + S + LL +IN++LD Sbjct: 1421 EFLANMSHEIRTPMNGVIG----MTDLLLDTDLTEEQLEYAESVRSSAESLLVIINDVLD 1476 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 S+IEAG+ +L E L +++E + RA+ K I + + S+ D +R Sbjct: 1477 FSKIEAGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLLKGDPVRLR 1536 Query: 370 QVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQ 426 Q++ NL NAVKFT G +V V+ + + D G GIA + SF Q Sbjct: 1537 QILFNLCENAVKFTEAGSVKVAVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQ 1596 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 + G GLGL I + +++ G+ + S+ +G L + D+ Sbjct: 1597 VDASTTRQYGGTGLGLAITKRLVSLLDGEIGVTSEPGKGSTFWFTLALEKQPQQKAGDSV 1656 Query: 487 ESTQYKCYA 495 T ++ Sbjct: 1657 GETPVPAFS 1665 >gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 1172 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 436 AHLETQQAELEQTNEQLADQSQALADQRDALDRNNEELNIAQAELQARADELQRASKYKS 495 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 496 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 554 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 555 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLE 614 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 615 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 673 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ + A GG + S +G +LP V Sbjct: 674 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 723 >gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1071 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 144/295 (48%), Gaps = 13/295 (4%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L ++L A A +F + + + + KDDL A L+ +RAE Sbjct: 635 LTVALVRDAAGAPDYFISVVEDIDRRKAIEEQLRLSKDDLERAARQATHLA----RRAEA 690 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 NLAKS FLA+MSHE+RTPLN +LG ++++ + +E EY RSG L L Sbjct: 691 ANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVL----DEEQLEYADMAIRSGGRLTRL 746 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363 + +ILDLSRIEA R LS + L D+ +EK + + + P + V Sbjct: 747 LGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLPLACRAAPDVPGVLVG 806 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPT 419 DE +RQ++ NL NA+KFT G V V+ + GQ ++ D G GI + +I T Sbjct: 807 DEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPGQARLLFTVADTGVGIPDDKIDT 866 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 V F Q + +QG GLGL I++ + GG I S+ +G V +LP Sbjct: 867 VGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLTIESEPGQGTTVYLMLPL 921 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 17/374 (4%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 +A GL W + P W + ++ S+ + L V + Sbjct: 23 LAFGLQWLFWGAIRPYIWFLFFPAVFFSSQVGGMAGG-------LAATVLSAMLASFFME 75 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + + + + + + F+ L ++ + A D A L A Sbjct: 76 PRFSFLFGNPVSLISVLIFCGMGTLFSLTHSRLARARQVAEAALAASRDANAGLRAANEE 135 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 ++ E + K+RF A++SHELRTPL ILG + ++ + + + Sbjct: 136 ITRLYEKTRELDALKTRFFANVSHELRTPLTLILGPL----ARRLEACADDAARADLRVM 191 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 R+ L ++++LD+++++AGR E + + + R + A+EK I Sbjct: 192 ERNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRIRFTIAA 251 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 LS+ D + +R+++ NLLSNA KFT GG V V + G +++ DNGPG+ Sbjct: 252 PERLSAA-VDVEKVRRILQNLLSNAFKFTPDGGAVDVRLE-EDGDWVAMTVADNGPGVPP 309 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 V F Q G GLGL IA+ HGG L+ + G LP Sbjct: 310 ALRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPR 369 Query: 475 TR----VLNFIPED 484 V++ PE+ Sbjct: 370 KAPDGVVVHDAPEE 383 >gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 490 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 8/238 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ +E K+ FLA+++HELRTP+N + G ++V+ +G + +E + I R Sbjct: 132 KEELKEATGVKNEFLANITHELRTPVNGMKGLADVL----LGTELTQNQRENVNIIRRCC 187 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 ++ N+IN ILD S+I AG+ +L I + + ++ + + EK +++ I ++ Sbjct: 188 DNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNIGDNV 247 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRV--HVTVGWTSGR-GQYISIKDNGPGIAE 414 + DE + Q++ NL+SNA+KFT++G V + + + D+G GI++ Sbjct: 248 PKKILGDELRLEQILSNLISNAIKFTSVGQLVIEVINTDQKEDEVELFFMVIDSGIGISK 307 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + SF Q +I G GLGL I++S++ GG + S++ G + Sbjct: 308 EDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSSEIGRGSTFSFSI 365 >gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580] gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580] gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 614 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 4/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 374 EQIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWQDPNIAP--RFLNVTQNETERMI 431 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS+ ++ Y+ ++ I I I ++ +E+++E + V Sbjct: 432 RLVNDLLQLSKFDSKDYQFNKEWIHFIRFFSLIIERFEMT-KEQHVEFISNLPDRELYVE 490 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QV+ N++SNA+K++ GG + +V Y+S+KD G GI ++ + Sbjct: 491 IDPDKITQVLDNIISNALKYSPEGGHITFSVDVNEEEELLYVSVKDEGVGIPRKDVEKIF 550 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ ++ H G S +G + LP Sbjct: 551 ERFYRVDKARTRRLGGTGLGLAIAKEMVQAHSGDIWADSIEGKGTTITFTLP 602 >gi|117926355|ref|YP_866972.1| histidine kinase [Magnetococcus sp. MC-1] gi|117610111|gb|ABK45566.1| histidine kinase [Magnetococcus sp. MC-1] Length = 550 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 162/373 (43%), Gaps = 19/373 (5%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQA 178 W L + G + +++ +S L F ++ Sbjct: 58 LWAHLVALFEGLPLEDTRCPAYGDVVIVLREMSGLRAEQGFSPMETCQFVFLLKDALLPL 117 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + L + + + + C E + +E ++++ Sbjct: 118 LQRRFADHPELFTWA------LIRLNRWVDRLGMITFECYMESRE-RTIMEQSRAMVAL- 169 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 AE N KS FLA+MSHE+RTPL+AI G N+ K Y+ I+R+G Sbjct: 170 ---AESSNRTKSMFLAAMSHEIRTPLHAINGL----AELLEREELNQDQKHYVHIIYRAG 222 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL LIN+ILD SR+EAGR EL + + +V E + ML +A++K + + ++P + Sbjct: 223 SRLLALINDILDFSRLEAGRIELESLVVEVRPLVHETMEMLSFKAKDKGLALQWTLEPQV 282 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + +D + QV++NL+ NA+KFT G V + + + + + ++D G GIAE + Sbjct: 283 PQWMMSDPTRLGQVLVNLVGNAIKFT-QSGEVALEIS-VAEQQLCVMVRDTGLGIAEDKQ 340 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F Q I I G GLGL I + I+A GG ++S+L EG LP V Sbjct: 341 QIIFEPFSQSDITISRRFGGTGLGLSITKQIVALMGGTISVQSRLGEGSRFYVRLPLKEV 400 Query: 478 LNFIPEDNHESTQ 490 ++TQ Sbjct: 401 AAGDLLAAQQATQ 413 >gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 576 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 30/289 (10%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPL+A++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L A+ L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVS 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +S+ D G GIA+ ++ + +F Q ++ +G G Sbjct: 469 ILDGDWPVHSVPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 LGL + + + HGG + S G + LP P E+ Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR------PPATEEA 571 >gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] Length = 830 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 15/285 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 403 VDGRVYRWNLSPIKVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 462 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + + +E++ + SG+HLL ++N+ILD SR+E Sbjct: 463 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 518 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375 G++ + +S L ++V + + +K +E+ + S V +D+ + Q++ NL Sbjct: 519 GKFRIQKSEFRLNELVYAIDRIYRPLCNDKGLELVVDSNITSAVLVRSDQVRINQILFNL 578 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 579 LNNAIKFTHQ-GSIRVVLELIEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFVQAESTTT 637 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 G GLGL I S++ GQ + S+ G LP V Sbjct: 638 REYGGSGLGLAIVHSLVEMLSGQLHVSSEYGRGTRFEIQLPIELV 682 >gi|160936746|ref|ZP_02084113.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC BAA-613] gi|158440537|gb|EDP18282.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC BAA-613] Length = 1070 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 9/259 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E + +L K+ + + A+ N AKS FL+ MSH+LRTPLNAI G + +I+ Sbjct: 530 TELRVMQKKLTEQKTALQDALEAAKHANRAKSDFLSRMSHDLRTPLNAIQGMARIIKSHV 589 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P E + I S L++LINE+LD S++E+G+ L+E ++L ++V+ + M Sbjct: 590 YDP---ERVLDSTDKIMLSNDLLISLINEVLDTSKVESGQMLLAEEEVNLAELVQGVVNM 646 Query: 339 LQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q + EKN+ + +V +D + ++Q++LNLLSNAVK+T GG + + + Sbjct: 647 VQPQLGEKNLRFKTYANRITHETVVSDLQRLQQLLLNLLSNAVKYTPEGGSITLEINEKP 706 Query: 398 GR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + D G G+ + V F + A A QG GLG+ I + I Sbjct: 707 SEQTDMAYYEFVVSDTGIGMKPEFLARVFEPFERADDAKIQAVQGTGLGMSICKKIAELM 766 Query: 453 GGQFLIRSKLREGVEVIAI 471 GG + S +G Sbjct: 767 GGTIEVESTYGKGSRFTVS 785 >gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 720 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 10/349 (2%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + + +L++ + + + + + ++ + A Sbjct: 152 ANLYHDLARTALVILVSQGANTFLVALFTFYILSRLVTRHLTAIAHSVSDYDFHEPPSAF 211 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 +L + V + + E ++ E R+ AE N AK Sbjct: 212 VLQRKAPREPDELDRV----VSAFNAMGMRLHRAYLDEREAAVEREARRMAEAANRAKGE 267 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHELRTPLN ILG+++++ + L ++ + I +SG+HLL LI+E LD Sbjct: 268 FLANLSHELRTPLNGILGYAQILGRDDSLSL---RQRDGVAVIQQSGEHLLTLIDETLDF 324 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 +++EAG+ + + L +V ++ ++A+++ + + V ADE +RQ Sbjct: 325 AKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLAFACSVAADAPCGVRADEHRLRQ 384 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V+LNLLSNAVKFT G V + + + D G GI T+ F Q A Sbjct: 385 VLLNLLSNAVKFTDR-GEVRLFIRRGESGAVRFEVHDTGIGICAEYHETIFMPFEQAGGA 443 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + A G GLGL I++ + GG+ + S + G LP V Sbjct: 444 ERRA-GGTGLGLAISRQFVRAMGGEVNVDSVVGRGSVFWFELPPALVEP 491 >gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 590 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 4/238 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F++S+SHELRTPL +I G++E + M + E ++ I + + Sbjct: 356 KLRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLDGAM--HDPEHAAAFLRIILQESEQ 413 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+N++LDLSRIE+G+ + + L I+++ ++ ++K I++ + L Sbjct: 414 LTALVNDVLDLSRIESGKIDYRFAPTDLRSILQKSSELVLPAIEKKKIKLDMQFQEELPL 473 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V+AD + + NLL NAVK+ GR+ VT + S + + DNG GI ++ Sbjct: 474 VYADAAYLEIAVRNLLDNAVKYVEDTVGRIRVTA-YKSESNVILEVHDNGLGIHPSDLDR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F + A G GLGL I + I+ H G + S+L +G LP + V Sbjct: 533 IFERFYRADKARSRQSGGTGLGLAIVKHIVLAHKGTIEVHSRLNQGSVFRMSLPVSTV 590 >gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] Length = 630 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E + +AE + AKS F+A++SH+LRTP+N ILG +++ + Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I D+ S LL L+ +ILD +R+E G+ EL S +L +V + + Q Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K I+I D SL S+ ++ +R++ LNL+ NAVKFT G++ VTV + Sbjct: 350 QKQIKINIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI + ++ T+ F + + S +G+GLGL I + ++ N GG+ + S Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 468 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG +P P + E+ Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495 >gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 1275 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 152/257 (59%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AE N K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ Sbjct: 1017 RDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMATERFGPI 1076 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y EY DI RSG+H+L+++N++LD+S+IEAG+ ++ A+ L + V E + ++Q + Sbjct: 1077 GNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQPQ 1136 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + S+ + AD + ++Q++LN+LSNA++FT GG++ V+ + + Sbjct: 1137 ANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSVS 1196 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461 + I+D G G+ E+ + F Q + + K G GLGLP+ ++++ + F I S Sbjct: 1197 LRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITST 1256 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1257 PNEGTLVEITFPSQRVL 1273 >gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 2037 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 97/426 (22%), Positives = 174/426 (40%), Gaps = 17/426 (3%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L Y +S+ ++ +G+ V + +L+ + L E Sbjct: 1173 LFAAYAYGNEVSVSREFALGQGLVGQCAVEKERILLTNVPSNYIKISSGLGEATPVNLIV 1232 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 L + + + +++ F + FLS + + I + + L + A Sbjct: 1233 LPVLFEQEIKAVIELASFDTFSQTHLDFLSQLTESIGIVLNTIEANSRTEDLLEQSQSLA 1292 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L ++ + E ++ E+E A+ +E ++ + + KS FLA+M Sbjct: 1293 -DELRRTNEELQDKAHLLVKQKDEVEEKNKEVEEARRSLEEKAEQLQLTSKYKSEFLANM 1351 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L ++ + G L NE Y IH G L+ LIN+ILDLS+IE+ Sbjct: 1352 SHELRTPLNSLLILAQQLYENHDGNL-NEKQVRYAKTIHSCGDDLIQLINDILDLSKIES 1410 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G + ++V + ++ K++ ++D L + D + + Q++ NL Sbjct: 1411 GYISTDFIKVRFNEVVSFVETTFKHISESKSLRFRIEMDEQLPQSLETDVQRLNQILKNL 1470 Query: 376 LSNAVKFTAIGGRVHVTVGW-------------TSGRGQYISIKDNGPGIAEGEIPTVLT 422 LSNA KFT G V + + ++ R I+D G GI++ + + Sbjct: 1471 LSNAFKFTEK-GEVKLRIYEAKRNWRLMNGSLDSADRVVAFEIRDTGIGISKDKQNIIFE 1529 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F Q + G GLGL I++ + GG + S++ G LP I Sbjct: 1530 AFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIELESEVGRGSIFTLFLPLQYNPAAIK 1589 Query: 483 EDNHES 488 + S Sbjct: 1590 REKQSS 1595 >gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 616 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 20/355 (5%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201 L + +AL F + + + ++ L T I++ +L G+++ FF Sbjct: 15 VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I L KS +++ + L + + E+ N KS +A++SHELR Sbjct: 75 LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+G S ++ + E +EY+ I+ S L ++ ++I+DL +I++ R EL Sbjct: 128 TPLNGIIGLSRILLEGEL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 I ++ + L A++ I+ L + ++ D + Q++ NL+SNAV Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG ++++V S+KD G GI + E V F Q + + QG G+ Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GL I++ I GG + S++ +G + P + +S + +A Sbjct: 304 GLAISKRIAKLMGGDLTLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352 >gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72] gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72] Length = 1012 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 146/325 (44%), Gaps = 11/325 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-LSCQ 218 A LS ++ Q + S LD L ++ + L + Sbjct: 188 RMAHRLSAPVERISALLQRMSSNAALDERLQVQGNDEIARLAHGLNTLIDTLQARDRELN 247 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + L +E A++ + AKS FLA MSHE+RTP+NA++G + + Sbjct: 248 DYRQHLEELVEQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTE 307 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + P ++Y+ I S Q LL +IN+ILD S+IEAG+ L + +L D++ + Sbjct: 308 LSP----QQRDYLRKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNI 363 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + ++A EK +++ IDP++ + D + Q+++NL +NAVKFT G V V Sbjct: 364 VTVKAAEKGLDVLLAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTER-GEVVVDCRLID 422 Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 S+ D G GI+ + + SF Q +I G GLGL I++ ++ Sbjct: 423 KTEDCVRVRFSVTDTGIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIME 482 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 G + S+ EG ++P V Sbjct: 483 GSLEVASEPGEGSTFSFVIPFGTVA 507 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 12/269 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + ++ + ++ AE + AKS FLA+MSHE+RTPL+ +LG +E+ + + P Sbjct: 450 MTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTELAMMNELTP--- 506 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E++ SG+ LL +IN++LDLS+IEAGR L + SL ++ I L + A+ Sbjct: 507 -EVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAVSAK 565 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 K + IF +D S+ D +RQ++ NL+ NA+KFT G V V++ + Sbjct: 566 AKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTER-GTVTVSMTADAVDAPAG 624 Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + +KD G GI E + + SF QG + + G GLGL I++ ++ GG+ Sbjct: 625 KITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGTGLGLTISKELVEMMGGRIW 684 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNH 486 S++ G + + Sbjct: 685 AESRMGHGSAFHFTVELALADEELDTAEE 713 >gi|302768056|ref|XP_002967448.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii] gi|300165439|gb|EFJ32047.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii] Length = 628 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + A + AKS FLA+MSHE+RTPLN I+ +E+ + + +EY+ + S Sbjct: 2 AKDVAVAADKAKSEFLANMSHEIRTPLNGIINCTEL----CLDTQTSTEQQEYLELVRFS 57 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 +HLL +I +ILD S+IEAG+ E+ + SL D + + +L RA +KN+E+ D Sbjct: 58 AKHLLRIITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARAHKKNLELAWSADAD 117 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGI 412 + + D + QV +NL+ N +KFT G V V + S+ D G GI Sbjct: 118 VPDQIVGDPGRLFQVFVNLIGNGIKFT-EDGEVVVLAKLQNKTKETVELLFSVNDTGVGI 176 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + + +F Q + G GLGL I+ + A GG+ + S+ +G Sbjct: 177 PKNKQSLLFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGRMWVESE-GQGSTFYFT 234 >gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM 18315] gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM 18315] Length = 1131 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 12/281 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +F ++ + I +L++ R +AEE N KS FLA+MSH Sbjct: 863 WFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTN-ELIRLRNKAEEANRLKSAFLANMSH 921 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS +I + + EY+ I + + LL L+N+ILDLS+IEAG+ Sbjct: 922 EIRTPLNAIVGFSNLIAM----AEEPDEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQ 977 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + + SA+ L +I + + R ++ +++ + + +++ + QV+ N LSN Sbjct: 978 MDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLSNFLSN 1036 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A K+T+ G + + G + D G G+AE IP V F + S QG Sbjct: 1037 ACKYTSE-GSITMGYERI-GAILRFYVADTGKGLAEENIPHVFERFAKFD----SFVQGT 1090 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I +SI+ + G+ + S+L +G +P V Sbjct: 1091 GLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIPYNPVNE 1131 >gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184] gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184] Length = 1041 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 12/281 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +F ++ + I +L++ R +AEE N KS FLA+MSH Sbjct: 773 WFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTN-ELIRLRNKAEEANRLKSAFLANMSH 831 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLNAI+GFS +I + + EY+ I + + LL L+N+ILDLS+IEAG+ Sbjct: 832 EIRTPLNAIVGFSNLIAM----AEEPDEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQ 887 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + + SA+ L +I + + R ++ +++ + + +++ + QV+ N LSN Sbjct: 888 MDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLSNFLSN 946 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 A K+T+ G + + G + D G G+AE IP V F + S QG Sbjct: 947 ACKYTSE-GSITMGYERI-GAILRFYVADTGKGLAEENIPHVFERFAKFD----SFVQGT 1000 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I +SI+ + G+ + S+L +G +P V Sbjct: 1001 GLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIPYNPVNE 1041 >gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] Length = 770 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 5/255 (1%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-LNNETYKEYIGDIHR 296 RK+ E + K F+++++HELRTPL ++LG +++ +++ + R Sbjct: 512 ARKQME---VMKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQKASTLLDMAQR 568 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S L +L+N+ILDL +I AG+ E + D+V++ + ++ A+E +++ + Sbjct: 569 SCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEEHDVQFVLDLKA 628 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D Q ++NLLSNA K++ G V + IS+ DNGPGI E Sbjct: 629 DDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISVADNGPGIPEEF 688 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 P + F Q + G GLGL I ++++ G+ +K+ EG +LP Sbjct: 689 QPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDTKVGEGTVFHILLPIVD 748 Query: 477 VLNFIPEDNHESTQY 491 + P + E+T + Sbjct: 749 AVAVDPLVD-ETTDF 762 >gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 588 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 6/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E +S F+A++SHEL+TPL +I GF E ++ + + ET ++ I + Sbjct: 357 RKLE---KMRSEFVANVSHELKTPLTSISGFIETLKSGAI--EDEETKMRFLDIIDIETE 411 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE L+ I + +++ I M+ AQ K+I + +++ +L Sbjct: 412 RLARLINDILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLP 471 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + ++ +Q+ +NL+ NA+K+T+ GGRV ++ + S+KD G GI + +IP Sbjct: 472 ILIGNQDWFKQMFINLIDNALKYTSEGGRVQISA-YKKYNHVVFSVKDCGVGIPKKDIPR 530 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A G GLGL I + I+ + G+ + S++ +G E I I+P Sbjct: 531 LFERFYRVDKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVP 584 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + ++ E ++RAE + AK F++ +SHE+RTP+NA++G SE++ + Sbjct: 373 ITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMNAVVGLSEMLLDSC----ED 428 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + IH++ L ++ +ILDL+ +EAG+ L ES+ S+ D+ ++ A+ Sbjct: 429 PEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAEAK 488 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQY 402 K +E K++ S D+ +RQ++ NLLSNA+KFT G V+ ++ G Sbjct: 489 RKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTPSGS---VSARISASEGGVL 545 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI E ++ + F +G + G GLGL + + +++ GG +RS+ Sbjct: 546 FEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRSRR 605 Query: 463 REGVEVIAILPNTR 476 EG LP R Sbjct: 606 GEGSCFSIWLPLRR 619 >gi|325265248|ref|ZP_08131973.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324029427|gb|EGB90717.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 852 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 10/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + R+ A E + AKS FLA+MSH++RTP+NAI+G + + T Sbjct: 318 LRYFSMTRCQLNELEMARQVALEASKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 374 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + E + + I SG+HLL LIN++LD+S+IE+G+ L+ ISL ++V + ++Q Sbjct: 375 DDREQLQNCLKKITLSGKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQP 434 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-- 398 + K + ++ L+ VW D + QV+LNLLSNA K+T GG + +++ Sbjct: 435 QVNAKKQTLDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTQEGGSIRLSLFEEKSLK 494 Query: 399 ----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +I++KDNG G++ + + S+ + A +G GLG+ I + I+ G Sbjct: 495 GENYVRIHINVKDNGIGMSPDFVKKIYDSYSRADGARIHKTEGAGLGMAITKYIVDAMEG 554 Query: 455 QFLIRSKLREGVEVIAILPNTRVLN 479 ++S+ +G E L + Sbjct: 555 TIDVQSEPDKGTEFHITLDLKKAAE 579 >gi|303317536|ref|XP_003068770.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240108451|gb|EER26625.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 2340 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E R EE Sbjct: 1819 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1878 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1879 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1934 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + E + L+ +++ +E + +D V D Sbjct: 1935 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1994 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V I + D G GI+ + + Sbjct: 1995 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2053 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461 F Q + + G GLGL I ++I+ GG+ +RS+ Sbjct: 2054 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2095 >gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1137 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L+++ R +AE N K FLA++SHELRTPL Sbjct: 705 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHANRVKDEFLATLSHELRTPL 764 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + P + I RS + +I+++LD+S I +G+ L Sbjct: 765 NAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAE 821 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + +VR + ++Q A + I + + D ++QV+ NLLSNA+KFT Sbjct: 822 HFDIAGLVRSVLELMQPTALARKIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 881 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V + + ++D G GIA +P V F Q G+GLGL Sbjct: 882 PAGGTVRVAMD-VEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 940 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489 I++ ++ HGG S +G +LP ++ + + ++T Sbjct: 941 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRPASADTT 987 >gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1420 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 7/313 (2%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + L+ + L+ A + +S + + +L+ + + E Sbjct: 945 AALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRE 1004 Query: 228 LEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 LE A+ + + + ++ AE N AK +FLA++SHELRTPL+ +L ++++ G +++ Sbjct: 1005 LERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDA 1061 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K I RS + + LI+++LD+SRI G+ + + L +V+ + + +A+ Sbjct: 1062 KIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAER 1121 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 K+I +D SL V D ++Q++ NLL+NA+KF+A G RV V + + + Sbjct: 1122 KSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERME-GSARLQV 1180 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464 D G GI + + F Q + G+GLGL I + ++ HGG S + Sbjct: 1181 SDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQ 1240 Query: 465 GVEVIAILPNTRV 477 G ILP V Sbjct: 1241 GAIFTVILPLMPV 1253 >gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 832 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 96/413 (23%), Positives = 158/413 (38%), Gaps = 33/413 (7%) Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWT----------LLTLVEPG 130 A+ + L W +L+ + Sbjct: 281 AIGEVFWLTATDWKRTFYISPAYERLWGRTTRSLYEAPLSWLESVHPEDRDPVLSYLTSL 340 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 P ++ LL + VA + I + L Sbjct: 341 AGRPVVPGVFPEYRLLRPDGTVRWVQARHFPVADDTGVVYRVAGIVEDITDRVLARKELE 400 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G+ T L + N +++ AE+ + A + VAK ++ + AKS Sbjct: 401 GINERLEDMVRDRTRTLNRMNEELIREVAERREAEAAMAVAKEAAE-------AASQAKS 453 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N ILG ++++ G + + ++ DI S LL LIN+ILD Sbjct: 454 EFLANMSHEIRTPMNGILGMAQIL----GGTSLDPAQQGFLKDIEDSATSLLTLINDILD 509 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMR 369 S+IEA R EL+ L ++ L + A+E +E+ + P + V D +R Sbjct: 510 FSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLELHVDVAPDVPDVLLGDADRLR 569 Query: 370 QVILNLLSNAVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 QV++NL+ NA+KFT GG V + G + + S+ D G GI + Sbjct: 570 QVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDATQELVFSVSDTGIGIRPEDAD 629 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + +F Q + G GLGL I + ++ GG + S+ +G Sbjct: 630 RIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGLESEPGQGSVFTFT 682 >gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 730 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 11/259 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +E L ++ + + A+ N AK FLA+MSHE+RTPLNAI+GF+++ Sbjct: 195 SELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMSHEIRTPLNAIIGFTKLCLHSE 254 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++Y+ + + L +LIN++LDLS+IEAG+ E+ +L ++ + Sbjct: 255 LTL----KQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERVPFNLNQVLSNVRHV 310 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + ++ + ++PS+ + V D ++QV++NL+ NA+KFT G V VTV Sbjct: 311 MWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIKFTDK-GEVSVTVSRKK 369 Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 R + + D G G+ + ++ + + + Q + G GLGL I+Q ++ Sbjct: 370 SRARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQKLVNLM 429 Query: 453 GGQFLIRSKLREGVEVIAI 471 G+ I S L +G E Sbjct: 430 KGRIHINSALGQGTECEFS 448 >gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 423 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L E + + +E + K+ F+A+MSHE+RTPLNAI+GF+ ++ T N Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+++ LL LIN+ILDLS+IE+GR + S + L DI +E ++ L+ Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + +W D + QV+LNLLSNA+KFT+ G + + + Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E ++ +V F + QG GLGLPI + I+ GG+ +RS+L Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G LP + E + S +C Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420 >gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] Length = 1014 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 905 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 10/284 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + L + + E R AE N AKS FLA+MSHE+RTP+NAI+G + Sbjct: 489 AETELERYRQHLESLVASRTQELSEARDAAEAANRAKSAFLANMSHEIRTPMNAIIGLNH 548 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ E + +++ + + HLL +I++ILDLS+IEAG L S +++ Sbjct: 549 LLQHEV----TDPRAHDWLTKVGEAAAHLLRIIDDILDLSKIEAGHLTLETGEFSPRNLI 604 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 +L RA++K + + I P + + D ++Q++LN +SNA+KF+ G + V Sbjct: 605 ERTFSLLGDRARQKGLRLHAAIAPDVPESLVGDALRLQQILLNFVSNAIKFSEQ-GEIRV 663 Query: 392 TVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ + D G G+ + + F QG + G GLGL IA+ Sbjct: 664 RAWTQAEDAEWMRLHLDVADQGIGLTAEQQARLFQPFAQGDESTTRRYGGTGLGLAIARR 723 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + G+ + S+ G A + R + D +++ Sbjct: 724 LANLMQGEVGVVSEPGRGSTFWASVRLRRSPSAAAPDGAARSEH 767 >gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] Length = 1035 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ L +E E A++ + +RAEE + AKS FLA+MSHE+R Sbjct: 464 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 523 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+G +E+ E + E + + S + LL ++N++LDLSR+E+GR L Sbjct: 524 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 579 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380 S + R + ++ A K ++ I +V D +RQV+LNL+ NA+ Sbjct: 580 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 639 Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 KFT GG V +TV RG ++ D G GI + SF Sbjct: 640 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 698 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + G GLGL I++ ++ GG+ +RS+ +G E +P Sbjct: 699 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 749 >gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] Length = 569 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + + ++ I + + +L+ ++ Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLIEGA--KDDVASLDMFLNIILKESNRIESLVMDL 399 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE R EL + ++L ++ + LQ +A++KNIEI +I P + A++ + Sbjct: 400 LDLSHIEQQR-ELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKI 457 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLLSNA+ ++ RV V V + Y+ I+D G GI++ E + F + Sbjct: 458 AQVITNLLSNAINYSLENNRVIVRVYRQQSK-VYLEIQDFGIGISKEEQKHIFERFYRVD 516 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G ++S+ +G Sbjct: 517 KARSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 560 >gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii] gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii] Length = 320 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 28/291 (9%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + L K N ++ S ++ + A +++ AE + AKS FLA+MSHE+RT Sbjct: 27 LAKKLEKLNEELESLVLQRTHQLV---KANEELQTSKQAAELASQAKSDFLANMSHEIRT 83 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P++ ILG S + +G + KE + + + LL++IN ILDL +IEAGR+E+ Sbjct: 84 PIHGILGMSAL----VLGTSLTDEQKENMTTVSECAELLLHIINSILDLGKIEAGRFEVE 139 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 + +L +++ + +LQ RAQ N+ + +ID ++ + D +RQ +LNL+ NA+K Sbjct: 140 LISFNLHHVLKSTVHILQPRAQAHNLRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALK 199 Query: 382 FTAIGGRVHVTVG-------------------WTSGRGQYISIKDNGPGIAEGEIPTVLT 422 FT G V V V W+ + I D+G GI++ ++ V Sbjct: 200 FTPE-GEVRVEVSVHRFGMQDDSVLSRLNASQWSDMSEMMLEISDSGIGISKNKLKDVFK 258 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q +I G GLGL + Q + GG L+ S+ +G +LP Sbjct: 259 PFTQADASISRLYGGTGLGLCVVQRFVELMGGHILVESEYGKGSSFYIVLP 309 >gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] Length = 543 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + + ++ I + + +L+ ++ Sbjct: 316 RREFVANVSHELKTPITSIKGFAETLIEGA--KDDVASLDMFLNIILKESNRIESLVMDL 373 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE R EL + ++L ++ + LQ +A++KNIEI +I P + A++ + Sbjct: 374 LDLSHIEQQR-ELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKI 431 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLLSNA+ ++ RV V V + Y+ I+D G GI++ E + F + Sbjct: 432 AQVITNLLSNAINYSLENNRVIVRVYRQQSK-VYLEIQDFGIGISKEEQKHIFERFYRVD 490 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G ++S+ +G Sbjct: 491 KARSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 534 >gi|262198449|ref|YP_003269658.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262081796|gb|ACY17765.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 699 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 165/387 (42%), Gaps = 13/387 (3%) Query: 96 SDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALS 155 + Y + VG+ L W ++ + + L L+ + Sbjct: 313 QRVGTMRDYRGVETVAVGRYLPSLRWGMVVKQDVAEAAAAMRRHRDLSLLAGVLTALGVL 372 Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM---LATALSFFTYITYHLFKSNV 212 A +S V + + + + + + + F +T L V Sbjct: 373 GLAFAVARSISRPIVRLTGAVRRLAAGDLEQTLPQDSHDEIGVLDQAFNTMTAQLRDLYV 432 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I AE+ +AE A R AE + AKS FL +MSHELRTPLNAILG++E Sbjct: 433 TIEDKVAERTAQLAE---ANLALRHARDAAERASRAKSTFLTNMSHELRTPLNAILGYTE 489 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ E + + + + + +IH++G HLL L+ E+LDL+RIEAG+ L E + L +V Sbjct: 490 LLREEAVEQGESARFSD-LDNIHQAGVHLLGLVEELLDLARIEAGKVTLIEVEVELSAVV 548 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 + + + ++ + + L DE RQ+++NLL NA KFT G + V Sbjct: 549 KRSLQTVAPVVEKNGNRMELDLASDLGRARLDEGKTRQILINLLGNAAKFT-ENGVITVR 607 Query: 393 VGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + +++ D G GI + + F G + G+GLGL +++ Sbjct: 608 GRRRAADDDGPDIISLAVIDTGAGIVAERLEKIFEPFETGDTSSTREFGGMGLGLSLSRK 667 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 + + GG+ + S+L EG LP Sbjct: 668 LAEHMGGRLVATSELGEGSVFTLELPA 694 >gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] Length = 764 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 13/241 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + ++ + Y I SG+ LL +IN++ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SDEQQLYANTIKNSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEA + EL L V E +++LQ A++K + + D L + D Sbjct: 272 LDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422 +RQV+ NL+ NAVKFT+ G V + + S G +++I+D G GI E ++ + Sbjct: 332 IRQVLTNLVGNAVKFTSE-GHVALQITGISNAGDKICSIHVTIEDTGIGIPEEKVQDIFG 390 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480 F Q +G GLGL I++ ++ GG+ + S+ +G LP + Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELPLAEGAST 450 Query: 481 I 481 Sbjct: 451 S 451 >gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] Length = 1035 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 368 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 425 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 426 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 485 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 486 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 538 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 539 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 594 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 595 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 654 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 655 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 713 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 714 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 773 Query: 469 IAILPNTRV 477 LP Sbjct: 774 TVALPLREA 782 >gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1022 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 11/264 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +RAE N AKS FLA+MSHE+RTPLN +LG ++V+ + P+ + Sbjct: 285 RAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLTPV----QR 340 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y I SG L+ ++N++LD++++++G+ + + L ++E +A+EK++ Sbjct: 341 NYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFAQAREKDL 400 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSG--RGQYIS 404 E+ + P + V D +RQ++ NL+ NA+KFT+ GG V V+ +IS Sbjct: 401 ELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEKSGRLHIS 460 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G+ E + + F Q + +G GLGL I + + GG+ + S+ Sbjct: 461 VVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIGVTSEKGV 520 Query: 465 GVEVIAILPNTRVLNFIPEDNHES 488 G +P V+ + ++ Sbjct: 521 GSTFSFWIP---VIEERADSEDDA 541 >gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2724 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 130/252 (51%), Gaps = 17/252 (6%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLASMSHELRTPLN ILG++++++ + + K+ I IH+ G+HLL LI Sbjct: 2264 NRAKSAFLASMSHELRTPLNGILGYAQILKTNS---NLTQKQKDGIEIIHQCGEHLLTLI 2320 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILDLS++EAG+ EL + + +L+A +K+I + V D Sbjct: 2321 NDILDLSKVEAGKLELYPEDFHFPSFLVGLCEIFRLKAIQKDITFNYNPPTHIPQIVHGD 2380 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGIAEGEIPT 419 EK +RQ+++NLLSNAVKFT G V TV G + ++D G G++ ++ Sbjct: 2381 EKRLRQILMNLLSNAVKFTDT-GTVTFTVNIIHKGQMTNDKIRFQVEDTGIGMSAEDLEK 2439 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LP---- 473 + F Q +G GLGL I + ++A G Q + S G + LP Sbjct: 2440 IFLPFEQI-KETSRHHEGTGLGLAITKKLIALMGSQIRVESHPGVGSKFWFEVDLPEVSS 2498 Query: 474 NTRVLNFIPEDN 485 + + + P D Sbjct: 2499 SAKFIPAKPLDT 2510 >gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 731 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 78/261 (29%), Positives = 124/261 (47%), Gaps = 5/261 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q +KD + +T AE NL KS FL ++SHEL TPL I+G S ++ Sbjct: 334 QVQEQKDIFERRVIERTQELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQ 393 Query: 276 LETMGP--LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + L + K Y+ I +G LL LIN++L+ S++ AG+ L SL + Sbjct: 394 KCSAANNFLPPDKQKHYLKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCN 453 Query: 334 ECIIMLQLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + +++ A+ K I + ++ +AD ++Q++L LL NA+KFT G V + Sbjct: 454 HVLEIIKTEAETKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTL 513 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + W G ++D G GI +IP + F Q + K GVGLGL + + ++ Sbjct: 514 RL-WKEGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVEL 572 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 H G + S L +G L Sbjct: 573 HRGTIEVESCLDKGSIFTVRL 593 >gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612] gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612] Length = 913 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 9/258 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ + N AK+ FL+SMSH++RTP+NAI+G + + + + E + + Sbjct: 389 ALEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIAR---VNLESPEKVGDCLNK 445 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ S +HLL+LINE+LD+S+IE+G+ +LS A L ++++E M + EK + Sbjct: 446 INVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQEASDMCKALLTEKKHDFRVI 505 Query: 354 IDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKD 407 + V D ++QV LNLLSNA+K+T GG++ + + D Sbjct: 506 VGQVQHEKVITDGDRLQQVFLNLLSNAIKYTPEGGKITLLINEKPSIIPKKGQYEFIFTD 565 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG G+ + + + F + + S QG GLG+ I ++I+ G ++S+ +G + Sbjct: 566 NGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENIVHMMNGTIDVKSEPGKGSQ 625 Query: 468 VIAILPNTRVLNFIPEDN 485 I +P + D+ Sbjct: 626 FIVTVPLELQIEEEQSDD 643 >gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium] Length = 1574 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 122/271 (45%), Gaps = 17/271 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 E + + + ++A + N AK FLA+MSHE+RTP+NAI+G + + + Sbjct: 806 RDATERKFMEDELRASEEQARQANRAKGEFLANMSHEIRTPMNAIVGMAYLAMQTGLTS- 864 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL- 341 + Y+ I + LL LIN+ILD SRI+AG+ E+ L ++ L Sbjct: 865 ---QQRGYLEKIQGASHALLRLINDILDFSRIDAGKLEMENLPFELDQVLGGVFDGLLPK 921 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++ +E+ L + D + QV+ NL NA+KFT G V V++ + Sbjct: 922 LARKGGVELLLDCPGDLPRRLRGDGVRLGQVLTNLCDNAIKFTEA-GEVAVSIRLEAMDE 980 Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + ++ + D+G GI +I +L F Q + G GLGL I ++++ GG F Sbjct: 981 EQLTYAFVVTDSGIGIDPEQIERILQPFQQADSSTTRRYGGTGLGLAICRNLVTMMGGVF 1040 Query: 457 LIRSKLREGVEVIAI-----LPNTRVLNFIP 482 + S G P + IP Sbjct: 1041 QVDSAPGRGSRFAFTARFGRFPKEEI-PAIP 1070 >gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1039 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 12/322 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + + P + A+ + DI M +T++ + + + + Sbjct: 568 AEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHL-RAVGRVDEGSGA 626 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + E + + E + +A N AK FLA+MSHE+RTPLN I G ++ Sbjct: 627 LVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLAD 686 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ++ P +E RS + L +L+ ++LD+SRI+AG+ E+ L +R+ Sbjct: 687 ASLAP----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVR 742 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + A + + + ID ++ V D ++QV+ NLL NA KFT G V + Sbjct: 743 ELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEK-GSVTLRAEH 801 Query: 396 TS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 S S++D G GI + + + T F Q K + QG GLGL I + I+ Sbjct: 802 LSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIR 861 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 GG S+ G V L Sbjct: 862 VMGGHLAFESEAGTGTTVYFTL 883 >gi|254227791|ref|ZP_04921222.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395834|ref|YP_003287687.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25] gi|151939833|gb|EDN58660.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339428|gb|ACY53222.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25] Length = 858 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 RK AE+ A++ FLA MSHE+RTP+N ILG +++++ E I + SG Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + + K + + + Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICENKGVNLVIENKIDP 587 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SN+VKFT G V + + I D G GI Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGAENSVLVVEITDTGIGI 646 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I +S++ G +RS+ G + + Sbjct: 647 EPDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 707 PVKDRERVLTPL 718 >gi|288940116|ref|YP_003442356.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288895488|gb|ADC61324.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 451 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 + L + + + Q +D L ++ + +++AE N A Sbjct: 153 MMDFLTRLARVMGEMGLARVRQQEANRTLQQHRDHLEELVQARTAELSLAKEQAEAANRA 212 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLNAI G + ++ + ++ + + +HLL +I+ I Sbjct: 213 KSAFLANMSHELRTPLNAITGMAYLVRASGVSV----KQAGWLDTLDGASRHLLEIISAI 268 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L+LS+IEAG EL I L +V + + +A+ K++ I ++DP + + D + Sbjct: 269 LELSKIEAGGMELDTVPIRLDTLVASVVDTILPQARAKHLHIGLELDPVSTPLMGDPARL 328 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSF 424 RQ +LN +NAVKFTA G V + ++D G G+ I + +F Sbjct: 329 RQALLNYAANAVKFTAT-GSVTLRTKVIEQTPEFVMMRFEVEDTGVGLPADVIDRLFENF 387 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q + G GLGL + + + GG + S EG Sbjct: 388 EQADNSATRRFGGTGLGLAMTRRLAHLMGGTVGVSSTPGEGSTFWFT 434 >gi|172062322|ref|YP_001809973.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171994839|gb|ACB65757.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1034 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 95/467 (20%), Positives = 163/467 (34%), Gaps = 24/467 (5%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71 V L+ G S F + H + + + L +I Sbjct: 280 VESLLKLIPWRGGASSSSAPVFRDGFLLFHGK--LESTGWTLAYALSWTDIAA--GVARS 335 Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 TL L + + R++ + + L Sbjct: 336 AGTLGAATLLALMVMWGLLLRFHRREFVPLYARSQRVFDSEALCRSVIEMAPIGLGLIAR 395 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 ++ + + T ++ A + + V + L Sbjct: 396 DDGHFMLVSPALTDMVERIGGDYHVLSSQVADAWQARGHAGGVLYGDLRVGDVQAVDLHL 455 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + ++ K L+ +E + A+ N AKS Sbjct: 456 EFIACGARY-----QGKDVLIAAVADMTAKRQLV-------QQLEEAVRAADSANAAKSS 503 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILG E++E + + T + +H S LL L+++ILD Sbjct: 504 FLAAMSHEIRTPLNVILGNLELLERSAL----DATQHGRVRTLHASATSLLALVSDILDF 559 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQ 370 S+IEAG + +I+ V + A+ K +++F + + D + Q Sbjct: 560 SKIEAGAMSVESIEFDVIETVERELHAFATIAKAKGLQLFCEIHACGTQRMRGDPTRLAQ 619 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 V+ NLLSNA+KFTA+G G I ++D G GI + +F Q Sbjct: 620 VLRNLLSNALKFTAVGRVTVRVAVVVEGHDAPELSIEVEDTGIGIGAEHRRKLFKAFSQV 679 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +I G GLGL + ++A G+ + S+ G +LP Sbjct: 680 DASITRRYGGTGLGLALCDRLVAAMAGRIAVESEAGVGSRFKVLLPL 726 >gi|302771433|ref|XP_002969135.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii] gi|300163640|gb|EFJ30251.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii] Length = 272 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 25/264 (9%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A +++ AE + AKS FLA+MSHE+RTP++ ILG S + +G + KE Sbjct: 3 KANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSAL----VLGTSLTDEQKE 58 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + + LL++IN ILDL +IEAGR+E+ + +L +++ + +LQ RAQ N+ Sbjct: 59 NMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNLR 118 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ------- 401 + +ID ++ + D +RQ +LNL+ NA+KFT G V V V Q Sbjct: 119 LSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPD-GEVRVEVSVHRFGMQDDSVLSR 177 Query: 402 ------------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + I D+G GI++ ++ V F Q +I G GLGL + Q + Sbjct: 178 LNASQWSDMLEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCVVQRFV 237 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 GG L+ S+ +G +LP Sbjct: 238 ELMGGHILVESEYGKGSSFYIVLP 261 >gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1095 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 12/276 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 Y +V +L+ +E+ L E + + + ++ AE + +KS FLA+MSHE+RTP Sbjct: 676 PYQYTARDVNLLTSVSEQVALAIERKANERDLLKAKELAEAASRSKSEFLANMSHEIRTP 735 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG ++ + + + ++++ SG+ LL +IN+ILD S+IEAG+ E+ Sbjct: 736 LNGVLGMLQLAQTTRL----DAEQRDFVDTALASGRSLLAIINDILDFSKIEAGKLEVIT 791 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 SL + + + + A++K + + I P + + +RQ++ NL+ NA+KF Sbjct: 792 EPFSLTPFLDDVLTTFRGEARDKGLTLAVDIWPGTPEHLTGGKSRVRQILFNLVGNAIKF 851 Query: 383 TAIGGRVHVTVG------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 T G V ++V S+ D G GI + + + F Q + Q Sbjct: 852 TDQ-GSVTISVCPLGPDPRDGRTRLLFSVSDTGIGIPDAMVDLIFEPFTQVDGSYMRRHQ 910 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + ++ GG I SK G + +L Sbjct: 911 GAGLGLGIVKRLIGLLGGSMCIDSKTGRGTTLHVVL 946 >gi|269963512|ref|ZP_06177837.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831687|gb|EEZ85821.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 859 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ A++ FLA MSHE+RTP+N ILG +++++ E K I + SG Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQKNQIDVLCHSG 528 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + K +E+ + Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICSNKGVELVIENKLDP 588 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SNAVKFT G + + + I D G GI Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPS-GSIRLNAELEQFYGADNSVLVVEITDTGIGI 647 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I ++++ G +RS G + L Sbjct: 648 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGVGTTFVVTL 707 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 708 PVKDRERVLRPL 719 >gi|189466273|ref|ZP_03015058.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM 17393] gi|189434537|gb|EDV03522.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM 17393] Length = 644 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 10/270 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L L L EL+ ++S E + RAEE + KS FLA+MSHE+RTPLNA Sbjct: 378 LLSGLFVSLYFYYHTKKLKDELQESESALREAKDRAEESSRLKSAFLANMSHEIRTPLNA 437 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+GFS+V+ G + + + Y+ I + LL LIN+ILD+SR+EA R + Sbjct: 438 IVGFSDVLAS---GGTSVDEQQGYVDIIKTNSDLLLRLINDILDVSRLEADRVTFTIEKC 494 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ + ++ + + +A++ E + D + D + ++QVI+NLLSNA KFT Sbjct: 495 DVVPLCQQVLASVS-QARKSENEFIFECDRESVDLRTDTQRLQQVIINLLSNADKFT-RN 552 Query: 387 GRVHVTVGWTSGRGQ-YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G++ + + + S+ D G GI + V F + QG GLGL I Sbjct: 553 GKITLKLEVDDEKRVATFSVSDTGTGIPLEKQKQVFERFEKL----NEYVQGTGLGLSIC 608 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + GG+ + S +G + P Sbjct: 609 KLTVEKWGGEIWVDSGYTDGARFVFTHPFE 638 >gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 589 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F+A++SHE++TP+ AI GF E + + + E K ++ I R L ++ + Sbjct: 366 MRRDFVANVSHEIKTPITAIKGFVETLLDGALD--DKENAKRFLEIISRHTDRLKAIVED 423 Query: 308 ILDLSRIE-AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +L+LSRIE AG EL S+ + + + + + RA +NI + L++V+ D Sbjct: 424 LLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENITVEMDCPDDLTAVF-DPT 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + Q ++NLL NAVK++ G V V G I ++D GPGI+E +P + F + Sbjct: 483 MIEQAVVNLLDNAVKYSEEHGVVRVGAKA-EGGEVLIWVEDEGPGISEEHLPRLFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + IMA HGG ++S+ +G L Sbjct: 542 VDKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFTLHL 587 >gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28] gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28] Length = 466 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + H + Sbjct: 157 LIYDMGLILAPLAIAMILITIWIGRKIIIA----ITKPLSQMERVANHFATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + ++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMA----HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 444 ESEKGKGTTVFIKL 457 >gi|119186753|ref|XP_001243983.1| hypothetical protein CIMG_03424 [Coccidioides immitis RS] Length = 2341 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 16/282 (5%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV-AKSLSDETRKRA---EEEN 246 ++ A +F + +N ++ Q E E AK E R EE Sbjct: 1820 VGISLANAFLFQEARKISAANEAMIEAQKRSLAQAREAEQKAKEAEAEARHNVKLKEEAA 1879 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS FLA++SH+LRTP+ ++G SE+++ + + Y+ I LL LIN Sbjct: 1880 KAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQDVYVESIRVCADTLLTLIN 1935 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--VWAD 364 +ILD S++EAG+ ++S ++L + E + L+ +++ +E + +D V D Sbjct: 1936 DILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALRYTHRDRGLETIEDLDDIAPDLLVLGD 1995 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGEIPTV 420 + Q+ +NLLSN+ KFT G V V I + D G GI+ + + Sbjct: 1996 PVRLHQIFMNLLSNSYKFTPK-GSVTVRAKVAEEDETTIRVTCIVADTGIGISNEHLARL 2054 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSK 461 F Q + + G GLGL I ++I+ GG+ +RS+ Sbjct: 2055 FRPFSQADSSTARSYGGSGLGLSICKAIIEEVLGGKIWLRSE 2096 >gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 1084 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 6/287 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L+++ R +AE N K FLA++SHELRTPL Sbjct: 656 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHANRVKDEFLATLSHELRTPL 715 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + P + I RS + +I+++LD+S I +G+ L Sbjct: 716 NAILGWSRLMQSDIADP---ANMGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAE 772 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + +VR + ++Q A + I + + D ++QV+ NLLSNA+KFT Sbjct: 773 HFDIAGLVRSVLELMQPTALARKIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 832 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V + + ++D G GIA +P V F Q G+GLGL Sbjct: 833 PAGGTVRVAMD-VEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 891 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489 I++ ++ HGG S +G +LP ++ + + ++T Sbjct: 892 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQHGVSDLRPASADTT 938 >gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 591 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 94/471 (19%), Positives = 175/471 (37%), Gaps = 22/471 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71 + + LG M + V+ L + +L+ + + + Sbjct: 135 LDTDLMYAAKRLGDGTRPLMVVRLALSLSSVKKTLSQLQRLIMGAVLLGALLSLGMAYMV 194 Query: 72 FPMWS-----LITLAVYAANLSLGKKVMNSDIKIG-EVYVWRIWLLVGQIAIGLCWTLLT 125 +S + T+A A L ++ ++ + A Sbjct: 195 ARGFSRPLKKMTTVATAIAAGDLQRRFRQYPGHEIGDLGRAFDRMADNMQAR-------- 246 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 + + + + + + + A+ + + Q + Sbjct: 247 IDDITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALMTLLDLPSMPIGMQLSEFVRNP 306 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE--TRKRAE 243 ++ A + + L Q + A A ++ + RKR E Sbjct: 307 EVLDAIRQVRRGEGHVSTEFRTLSRAPRFLEAQVVRLPDSAPQAGAVAVFHDLTERKRLE 366 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E F+A++SHELRTPL AI G SE + + N K ++ I R+ L Sbjct: 367 EVRR---DFVANVSHELRTPLTAIRGSSETLLGGAL--ENQHYAKHFVEMIARNASRLER 421 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L ++LDL+ +E+GR EL + AI + + + A+E+ +E+ +++ + A Sbjct: 422 LTQDLLDLAAMESGREELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMA 481 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 + + Q +LNLL NA+K+T GG+V + + + IS+KD+G GIA + + Sbjct: 482 SRRHLEQAVLNLLDNAIKYTESGGKVTLALT-EAEGQTRISVKDSGAGIAPEHLGRIFER 540 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + G GLGL I + I HGG+ + S +G +LP Sbjct: 541 FYRADKDRSRQMGGTGLGLAIVKHIAQKHGGRVEVESTPGQGSTFTLVLPA 591 >gi|312194418|ref|YP_004014479.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311225754|gb|ADP78609.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1425 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 160/363 (44%), Gaps = 17/363 (4%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + + +L + +++ + F + + + + IM+ Sbjct: 811 GLGSAPPSDLVVVPVLFENQVLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANAR 870 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + LA + L ++N ++ ++ E+E A++ +E ++ Sbjct: 871 TEELLAQSQRLTQ-ELRSQSVELQRTNAELEEKAQLLEEKNTEIEQARTGLEEKAEQLAL 929 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K+ FLA+MSHELRTPLN++L ++++ L E+ IH SG LL L Sbjct: 930 SSQYKTEFLANMSHELRTPLNSLLILAKLLADNQDDNLTY-QQIEFARTIHSSGSELLML 988 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 IN+ILDLS++EAG+ ++ +A+ + ++ A+ K + ++ + Sbjct: 989 INDILDLSKVEAGKMDVEATAVGTAAMCDALAQAVRPVAEVKGLTFEVQVADDVPAEFVT 1048 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-------------SIKDNGP 410 DE+ ++QV+ NLLSNAVKFT G V + V S G +I ++ D G Sbjct: 1049 DEQRIQQVLRNLLSNAVKFTDS-GTVRLDVTVASSDGPFIVPSLRSAPTVLSFAVSDTGI 1107 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA ++ + +F Q G GLGL I++ I GG + S L +G Sbjct: 1108 GIATDKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSVLGQGSTFTL 1167 Query: 471 ILP 473 +P Sbjct: 1168 YVP 1170 >gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] Length = 1325 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 10/277 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F + L N I E + + ++++ A + + AKS F+A+MSH Sbjct: 641 FIKVMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKSEFVANMSH 700 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTPLN ++GFS+++ + NE +Y+ + +S LL+LIN++L+ S+IE+G+ Sbjct: 701 EIRTPLNGVIGFSDLLMKTPL----NEVQHKYMKTVFQSANTLLDLINDVLNFSKIESGK 756 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 +L SLI +V E + + + A +K +E I+ + +W D ++Q+++NL+S Sbjct: 757 LQLDIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWIDGVRLKQILMNLIS 816 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G V + V + + S++D G GIA+G + +F Q ++ Sbjct: 817 NAIKFTHR-GYVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKIFNAFIQEDASVTK 875 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I+ I+ + ++S+L G E Sbjct: 876 KYGGTGLGLSISGKILGLMNSKLKLKSQLGIGSEFYF 912 >gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2] Length = 1107 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 18/272 (6%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+ + + K A N AK FLA+MSHE+RTP+NAI+G + + Sbjct: 387 RDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHEIRTPMNAIIGLTHLALETDNYT- 445 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+ + S LL LIN ILD S++EA + EL + +L D++ + + Q + Sbjct: 446 ---QQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIELHHADFNLADMMNKLAQVFQHK 502 Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++K++++ + + + D + QV++NLL NA+KFT G V +TV Sbjct: 503 ARQKHLQLLFDMRLDTDVTCNGDSDKIYQVLVNLLGNAIKFT-RHGFVKLTVSKEKD-AL 560 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + D G GI + +F Q +I G GLGL I++ ++ G+ S+ Sbjct: 561 SFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGLGLAISKRLVELMHGELEFTSE 620 Query: 462 LREGVEVIAILP-----------NTRVLNFIP 482 L +G + +P +V IP Sbjct: 621 LGKGTQFCFAVPELVHETANEISREKVKPAIP 652 >gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 1032 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 365 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 422 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 423 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 482 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 483 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 535 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 536 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 591 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 592 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 651 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 652 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 710 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 711 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 770 Query: 469 IAILPNTRV 477 LP Sbjct: 771 TVALPLREA 779 >gi|188991423|ref|YP_001903433.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167733183|emb|CAP51381.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1146 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 8/330 (2%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKD 222 + +A + + + A + + +S + E+ Sbjct: 676 RALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLREQAMARSASHLAGIVIERT 735 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + A+L+ + R +AE + K FLA++SHELRTPLNAILG+S +++ + P Sbjct: 736 RVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP- 794 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I RS + +I+++LD+S I +G+ L + + R + ++Q Sbjct: 795 --AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPT 852 Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ + I + + D ++QV+ NL+SNA+KFTA G V V++ + Sbjct: 853 AQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPDGDVRVSLE-VEEQRL 911 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GIA +P V F Q G+GLGL I++ ++ HGG S Sbjct: 912 RLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGAYSA 971 Query: 462 -LREGVEVIAILPNTR-VLNFIPEDNHEST 489 G +LP V + P +T Sbjct: 972 GEGHGATFTVVLPFQHGVSDQRPAPEPANT 1001 >gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 613 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 11/321 (3%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + ++ L + V+ I A Y + ++ Sbjct: 297 FFIAASSLIIAVLVAILLNRKIVVSIKKLKNSAEIFGHGKYDERVFIDTGDELEELAESF 356 Query: 222 DDLIAELEVAKSLS----DETR---KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + E+ A +E + +E + KS ++ +SHELRTPL +I G+ +++ Sbjct: 357 NGMAEEISRANKKLKKDANELKNSYDELKEVDDLKSELISIVSHELRTPLTSIRGYIDLL 416 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + ET G L NE KE++ I + + L + + + DL ++ +++ + V E Sbjct: 417 KDETAGKL-NEKQKEFVSVISENSERLKRITDNMSDLVTVDNEHLNTKLDKLNIKNAVEE 475 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + LQ A +NI + + +D + D+ + QV+ NL+ NAVKF+ +V VT G Sbjct: 476 IVSSLQHFADSRNIILLEDVDD--LYIKGDKSKIHQVLANLIENAVKFSKTQTKVTVT-G 532 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + ++ I D GPGI + + V F Q + K G GLGL + + I+ +HGG Sbjct: 533 YEDNGNIHLEITDQGPGIPKEYLDKVFDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGG 592 Query: 455 QFLIRSKLREGVEVIAILPNT 475 + S++ +G V + P Sbjct: 593 SIWVESRIGKGTNVHVLFPIA 613 >gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 1370 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 104/423 (24%), Positives = 170/423 (40%), Gaps = 27/423 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R + V ++ G L L I +L + + Sbjct: 639 RIPLGRSLVGQAARNRRAITVEELPAGYVTISSGLGRTAPTALRVLPIVVEDQVLGVIEL 698 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITY 205 ++++ F + FL + ++ I++ D L Sbjct: 699 ASVTRFTQIHEDFLDQLMETIGVNVNTIVANARTDELLLESQRLTAELQARSEELQVQQD 758 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ + ++E ++ R+ E + KS FLA+MSH Sbjct: 759 ELQRSNAELEEKATLLAEQNRDIETKNLEIEQARQELETRAQELSLASRYKSEFLANMSH 818 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 819 ELRTPLNSLLILAQLLAQNPSHNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 877 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S + L ++ + +K++E P + + D+ +RQV+ NLLS Sbjct: 878 MDISPERVPLRRLLDYVEATFRPMTSQKSLEFAVSTAPGVPVDLLTDDSRLRQVLRNLLS 937 Query: 378 NAVKFTAIGG-----------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT G V V+V G +KD G GIA ++ T+ +F Q Sbjct: 938 NAVKFTERGRVELLIEPAQAHDVPVSVHR-EGAVVAFHVKDTGIGIAAHQLETIFGAFQQ 996 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I + I GG + S +G LP R P Sbjct: 997 ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVESTPGQGSTFTLYLPVARADFEEPNRAP 1056 Query: 487 EST 489 + Sbjct: 1057 QPA 1059 >gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 968 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 11/266 (4%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A ++ AE N+AKS FLA+MSHE+RTP+N ++G E+++ + ++ Sbjct: 438 AIQALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTELDS----DQRDL 493 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + SG LL +++++LD S+IEAGR EL + + L +V + + A K++ I Sbjct: 494 VSTTRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSI 553 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQY---IS 404 +DP L V AD +RQ++ NL NAVKFTA G V + VG T +G+ I Sbjct: 554 STFVDPGLPPLVLADPVRLRQILFNLAGNAVKFTAQ-GLVAIHVGRCGTDEQGRVMVSIR 612 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F Q + G GLGL I + ++ G S+ Sbjct: 613 VVDTGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNV 672 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + P++ E T+ Sbjct: 673 GSSFWCRLPLPTAEDAAPDNLAEQTE 698 >gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae ATCC 10712] Length = 1785 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 102/422 (24%), Positives = 169/422 (40%), Gaps = 41/422 (9%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 + G L E L + +L + +++ F FL+ Sbjct: 1164 RTIQLNAPPGYLKISSGLGEASPAHVIVLPVLFEGKVLGVIELASFQPFTQIQRDFLNQI 1223 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITYHLFKSNVKILSCQAEKD 222 ++A + I ++ L + + L SN+++ Sbjct: 1224 AELIATTVNTISVNTKTEVLLQQSQELTEQLKERSAELEHRQKELQGSNLELEEKAELLA 1283 Query: 223 DLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 ++EV + +E R+ EE KS FLA+MSHELRTPLN++L ++++ Sbjct: 1284 RQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLA 1343 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 L E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 1344 DNAETNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYV 1402 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV--- 391 + EK ++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G V Sbjct: 1403 EATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRP 1462 Query: 392 -----------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 ++ S+ D G GIA ++ + +F Q Sbjct: 1463 AGADVPQSIREQLLEAGSLRDPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRK 1522 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI------PEDNHES 488 G GLGL I++ I GG+ S+ G LP + P+D ++ Sbjct: 1523 YGGTGLGLSISREIARLLGGEIFAASEPGRGSTFTLYLPLSPTELPSGGYGQGPQDAEDT 1582 Query: 489 TQ 490 Q Sbjct: 1583 QQ 1584 >gi|77359512|ref|YP_339087.1| sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874423|emb|CAI85644.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis TAC125] Length = 924 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 13/296 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + + L ++ Q +++L E++ ++ A++ + A Sbjct: 218 LNVIALNINFLLKKVQAALSENEKTRKELQKLQNNLEIEVQTRTLALEKETLNAQKASEA 277 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTP+N ++G +++ + + + I S LL+++++I Sbjct: 278 KTTFLATMSHEIRTPMNGVIGTIDLLRQTNL----DGSQYRLSTIIRESAFSLLSILDDI 333 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEAG+ + S+ D + E + +L A+ +++++ I P + + D Sbjct: 334 LDFSKIEAGKLNIDPIPFSVTDTIEEVVRVLSSIAKHRDLDLNLSIAPDIPINLIGDNTR 393 Query: 368 MRQVILNLLSNAVKFTA----IGGRVHVTVGWTSGRGQYIS----IKDNGPGIAEGEIPT 419 +RQ++ NL SNA+KFT+ G+V+++V ++ + + DNG G+++ ++ Sbjct: 394 VRQILYNLCSNAIKFTSTSESHKGQVNISVEVAHNTAEHFTLRFCVTDNGKGMSQAQLRE 453 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q +I G GLGL I +S+ G + S + G E LP + Sbjct: 454 IFNPFIQAESSITREYGGTGLGLSICKSLTELMLGTISVNSNIGIGSEFTVELPFS 509 >gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 812 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 10/228 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G + ++ + + +++ + S ++L+ +IN+I Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKL----DPEQRQFAESVRNSAENLMTVINDI 338 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEAG+ E L++ + + ML RAQ K IE+ I P + + D Sbjct: 339 LDFSKIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGR 398 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTS 423 +RQ++ NLL NA+KFT G V ++ + D G GI+ + S Sbjct: 399 LRQILTNLLGNAIKFT-EHGEVVLSTTLERETATHAIVRFDVTDTGIGISRDVQARLFQS 457 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q + G GLGL I++ ++A G+ ++S+ G Sbjct: 458 FEQADSSTTRRYGGTGLGLAISKQLVAMMHGEIGVQSEAGVGSTFWFT 505 >gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces ambofaciens ATCC 23877] Length = 1331 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 99/410 (24%), Positives = 166/410 (40%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R ++V ++ G L E + I +L + + Sbjct: 600 RIAFGRTLVGQAARSRRTIVVDELPPGYVTISSGLGEVVPTALVLVPIVVEGQVLGVIEL 659 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY------ 205 ++++ F FL + ++ I++ D LA Sbjct: 660 ASVAPFTQINRDFLELLMETIGVNVNTIVANARTDELLAESQRLTAELQARSAELQVQQE 719 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L +SN ++ + ++E ++ R+ E + KS FLA+MSH Sbjct: 720 ELQRSNAELEDKASLLATQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG+ Sbjct: 780 ELRTPLNSLLILAQLLAQNPSRNLT-PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGK 838 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S ++L ++ + +K ++ + + D+ +RQV+ NLLS Sbjct: 839 MDVSPERVTLRQLIEYVEATFRPMTTQKGLQFTVSTAAGAPADLLTDDSRLRQVLRNLLS 898 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V + V +KD G GI E + ++ +F Q Sbjct: 899 NAVKFTERGG-VELAVEPAHDDEVPPGVVRGGAVVAFRVKDTGIGIPEQNLESIFGAFQQ 957 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + + GG + S G LP R Sbjct: 958 ADGTTSRKYGGTGLGLSITREMAQLLGGAVTVDSTPDRGSTFTLFLPAAR 1007 >gi|91772433|ref|YP_565125.1| histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711448|gb|ABE51375.1| Histidine kinase domain protein [Methanococcoides burtonii DSM 6242] Length = 235 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE+ NL+KS F+ +MSHE+RTPLN+++GFS V+ + +E+ Y+ +I +G+HL Sbjct: 4 AEDANLSKSEFIMNMSHEVRTPLNSVIGFSSVLLDKPGNR--DESQVRYLHNILFNGKHL 61 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L + NEIL +S+IE+G + +++ E + A EK I + ID + + Sbjct: 62 LEIFNEILAISKIESGAMVFQPKKFLISNVISEIETSMMPFALEKGIILTHIIDVENAIM 121 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ADE + ++ NL+ NA+KFT G V + + +KD G GI + Sbjct: 122 NADEFKFKHILYNLVHNAIKFTPDGRHVTIETKKCGKSMCFF-VKDTGIGILPTNQIKLF 180 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q + G+GLGL I + + HGG+ I S++ +G +P Sbjct: 181 EQFYQVDSSTTRKYGGIGLGLNIVKKFVEIHGGKVWIESEVEKGSTFGFSIP 232 >gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 645 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 94/358 (26%), Positives = 156/358 (43%), Gaps = 22/358 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L +++ A+ LS + + +AI Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + +TR+ A Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-- 360 +IN+ILD SRIE ++ +L ++V A ++N+ + I P L + Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLETMN 376 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416 V D +RQ+++NL+ NA+KFT G+V V W + + ++D+G GI Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTER-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ +F Q +I G GLGLPIA+++ GG SK G +P Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESKEGSGSLFTLQIPL 493 >gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 764 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 6/244 (2%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R+ A AK FL++MSHE+RTPLNAILGF ++ E + ++ Y+ Sbjct: 141 QKLIDARQEALRAAQAKEYFLSNMSHEIRTPLNAILGFVNLLMDEDISN----KHRNYLD 196 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I SG++LL++IN+ILD S++ +G + + SL + + + + A K+I I Sbjct: 197 IILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITS 256 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 IDP + ++ D ++Q++ N LSNA+KFT +GG + V + IS+ DNG G Sbjct: 257 FIDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASC-HNQQLTISVNDNGVG 315 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ + +F Q + ++G GLGL I+ + G+ + SK+ EG Sbjct: 316 INKEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLD 375 Query: 472 LPNT 475 +P Sbjct: 376 IPVE 379 >gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 616 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 20/355 (5%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201 L + +AL F + + + ++ L T I++ +L G+++ FF Sbjct: 15 VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I L KS +++ + L + + E+ N KS +A++SHELR Sbjct: 75 LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+G S ++ + E +EY+ I+ S L ++ ++I+DL +I++ R EL Sbjct: 128 TPLNGIIGLSRILLEGEL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 I ++ + L A++ I+ L + ++ D + Q++ NL+SNAV Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG ++++V S+KD G GI + E V F Q + + QG G+ Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GL I++ I GG + S++ +G + P + +S + +A Sbjct: 304 GLAISKRIAKLMGGDLTLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352 >gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194] gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194] Length = 937 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 25/367 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL--SFFPVVVA-LSTQAIMSM 182 L+ P L YK L+A + L + VF P+ + Q + + Sbjct: 156 LMIELNNHPLELARYKILLSLVATGLITLLILLFCLNVFSRRWLAPLYEIRMQMQRLNAD 215 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ 236 + + I + + + L + + +L + Sbjct: 216 TLDQHIVVNSTGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 237 -ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R +A N +KS FLA++SHELRTPLN+I GF ++ + + Y+ I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQ---QNLSNEQNLYLQTIR 332 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +S HLL LIN +LD S+I+AG+ EL + L + + + + ML A +K+I + Sbjct: 333 KSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 ++ V D +Q++ NL+SNA+KFT G + V V + S++D+G Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI-MANHGGQFLIRSKL-----RE 464 G++ + + SF QG ++ G GLGL I++ + + GQ + Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVVHLMRGQIGFEDNQERAPTEK 511 Query: 465 GVEVIAI 471 G Sbjct: 512 GSTFWFT 518 >gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 822 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 3/255 (1%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E ++ AE +LAKS FL+SMSHELRTP+NAILGF++++ L E + Y Sbjct: 433 EEELREAKRMAEAASLAKSEFLSSMSHELRTPMNAILGFAQLLTNADNDSLG-ERQRFYA 491 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I +SG HLL+L+N+ILD++RIEAGR LS + ++ E I M+ A+ + + + Sbjct: 492 DSILKSGNHLLSLVNDILDMARIEAGRLSLSFERVEPDQVMAEIIPMIAATAERRKVTLI 551 Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 +I +V AD ++Q ++NL SNAVK+ GG V ++ I++ D G Sbjct: 552 DEISGRGAPAVEADFTRLKQALINLASNAVKYNRTGGTVRFSISHGETGPVRIAVSDTGI 611 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E V F + A S +G G+GL I + ++ GGQ ++ G Sbjct: 612 GIPEKRRTEVFQPFARL-GAEASTVEGTGIGLTITKMLVEAMGGQIGFFTQENLGTTFWL 670 Query: 471 ILPNTRVLNFIPEDN 485 +P P Sbjct: 671 EIPRAASQPVAPPPA 685 >gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 597 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 90/268 (33%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E A + R+ A+ N AK+ FLA MSHE+RTPLN +LG + + + +E Sbjct: 195 ERAMKRLKDAREAADRANAAKTDFLAQMSHEIRTPLNGVLGMARGLRDTPL----DEGQV 250 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + I SG LL+++N++LDLS+IEAG EL +SL+ IV + + EK I Sbjct: 251 EMVSTICSSGDLLLSVVNDVLDLSKIEAGEIELETVDMSLVQIVDWTVSAFRPACVEKRI 310 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG---QYI 403 I IDP D +RQ++ NL+SNA+KFT IG + V + G G I Sbjct: 311 TIESSIDPGAEGWYRGDPTRVRQILSNLVSNAIKFTQIGTVSISVRCSTSPGDGTDRVEI 370 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G G+ ++ T+ +F Q + A G GLGLPI + + GG+ +RS+ Sbjct: 371 CVADTGIGVPAHKLQTIFQAFSQADSSTTRAYGGTGLGLPICRKLATLMGGEISVRSRPG 430 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQY 491 G L R + E +T+ Sbjct: 431 CGSIFTVALRMPRTEAPLIEIAQSATKQ 458 >gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase [Leptosphaeria maculans] Length = 2472 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 16/323 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + V + + + L + + + + + + + +A Sbjct: 1886 LGSIYVEGPANSFTERNTQVLRLLVNQISISLANALLFKEIERVSASNEAMLEMQKRALA 1945 Query: 227 ELEVAKSLSDETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + A+ + E A EE AKS FLA++SHELRTPLN ++G SE+++ + Sbjct: 1946 QARAAEIKAKEAEAIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL 2005 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 N Y I LL++IN++LD S++EAG+ + E +SL + + E + L Sbjct: 2006 ----NGEQAGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRAL 2061 Query: 340 QLRAQEKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397 E+ + I + V D + QV++NLLSN+ KFT G V V + Sbjct: 2062 AYTNAERGLKTIEELYLDPEMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEA 2121 Query: 398 GRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGG 454 I S+ D G GI E + + F Q + + G GLGL I ++++ N G Sbjct: 2122 DDWVDITCSVIDTGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHG 2181 Query: 455 QFLIRSKLREGVEVIAILPNTRV 477 + + S +G V L +V Sbjct: 2182 KVWLDSVPGKGTTVSFALRFQKV 2204 >gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1346 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 147/267 (55%), Gaps = 12/267 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ ++IL+ E + I++ ++A + R A+ + AKS FLA+MSHE+RTP+NAI+ Sbjct: 588 RAKLEILNDSLESE--ISDRKLALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAII 645 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + + P ++++ ++ + + LLN++++ILD S+IEA + E+ L Sbjct: 646 GLTRITLDSELAP----KQRDHLRKVYNASRALLNILDDILDYSKIEANKLEIERVEFIL 701 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG 387 D++REC + + QEK +E+F +IDP + S+ D + Q++ NL++NA+KFT G Sbjct: 702 EDVIRECFDLFMQKLQEKELELFIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQR-G 760 Query: 388 RVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +H+ S Q S++D G G+ + + + +F Q +I G GLGL Sbjct: 761 EIHIRAALISENNQTLNLKFSVRDTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLT 820 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIA 470 I++ ++ GG + S+ G E Sbjct: 821 ISKRLVELMGGALSVASEKDIGSEFTF 847 >gi|254567876|ref|XP_002491048.1| Histidine kinase osmosensor that regulates a MAP kinase cascade [Pichia pastoris GS115] gi|238030845|emb|CAY68768.1| Histidine kinase osmosensor that regulates a MAP kinase cascade [Pichia pastoris GS115] gi|328352426|emb|CCA38825.1| Hybrid signal transduction histidine kinase J [Pichia pastoris CBS 7435] Length = 1113 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 142/322 (44%), Gaps = 24/322 (7%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKDDLIA 226 V+ + ++A L + + F IT + + E D L Sbjct: 400 AQVSDVDGLWKEITTNVNTMAANLTSQVRAFAQITAAATDGDFTRFITVEASGEMDALKT 459 Query: 227 ELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ++ E R+ AE N AKS FLA+MSHE+RTP+N I+G +++ + Sbjct: 460 KINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPMNGIIGMTQLTLETEL 519 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +E + +H LL +I++ILD+S+IEA R + + A SL V + L Sbjct: 520 TQY----QREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIAFSLRGTVFGALKTL 575 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395 ++A EK +++ ++D S + D +RQVILNL NA+KFT G+V +TV Sbjct: 576 AVKAIEKQLDLIYQVDNSFPDNLIGDSFRLRQVILNLAGNAIKFT-THGKVTLTVKKAAR 634 Query: 396 -----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + D G GI E ++ + +F Q + G GLGL I++ ++ Sbjct: 635 IVSNNDEKLLLEFCVSDTGIGIEEDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIH 694 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 GG+ + S G + Sbjct: 695 LMGGEIWVTSGYGAGSNFFFTI 716 >gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 852 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 5/230 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E KS F++++SHELRTPL++I GF+E++ + + NE +Y+ IH + L + Sbjct: 614 EAERLKSEFISTISHELRTPLSSIYGFTELMVKKQL---PNEKQAKYLETIHSETERLTH 670 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N+ LD+ R+E+G + + +VR+ + + + + E+ D ++ Sbjct: 671 LVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIAD-DARPYELFV 729 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + +Q++ NLLSNAVK++ GG++ V + + I +KD G GI + + Sbjct: 730 DCQKFKQLMSNLLSNAVKYSPRGGKITVELAH-HEQIVSIKVKDEGIGIPSDALDRLFDK 788 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + + G GLGLPI Q I+ H GQ + S EG I +P Sbjct: 789 FYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIP 838 >gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 743 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 6/262 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Q+ D+ E ++LSD R +A+ N AKSRFLA SHE+RTPLN I+G ++ Sbjct: 204 ELQSVGRDVTDRTETERALSD-ARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLL 262 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 T+ P Y + SG+ L+ LI E+LD S+IEAG+ +L + +L ++ E Sbjct: 263 DTTLTP----EQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEI 318 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +L RAQ K +EI +D L V D +RQV+LNL NA+KFTA GG + Sbjct: 319 TELLAPRAQAKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEP 378 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 ++D G GIA + F Q + G GLGL I++ I+ GG Sbjct: 379 GIRPNEISFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGG 438 Query: 455 QFLIRSKLREGVEVIAILPNTR 476 + + S+ +G +P Sbjct: 439 RITLASEPGKGSTFEVAVPLAP 460 >gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 894 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 16/286 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHE 259 + + + + L A+ E A + E K E+ + KS+FLA+MSHE Sbjct: 448 LQTQTEELQAHSVEMHLLNERLGAQKEAALIAASELENYAKELEKSSKYKSQFLANMSHE 507 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L S+++ G L E Y IH SG LLNLIN+ILDLS++EAG+ Sbjct: 508 LRTPLNSMLILSQILSENKQGNLTEEEQ-HYASVIHNSGSELLNLINDILDLSKVEAGKL 566 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++ ++L ++ A+ KN+E ++ L +++D + Q++ NLLSN Sbjct: 567 QIEMDLVNLTELPEVMEGYFSKSAESKNLEFEIEMAEDLPDMMYSDGMRLHQILRNLLSN 626 Query: 379 AVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 A+KFT G V ++V SG S++D G GIA + + +F QG Sbjct: 627 AIKFT-ESGSVKLSVKKMNSIVTSDFIISGEVIAFSVEDTGIGIAAEHLQPIFEAFQQGE 685 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I+ + GG + S+ G + LP Sbjct: 686 ETTARRFGGTGLGLSISLHLAKLLGGYITVESEEGSGSIFVLYLPL 731 >gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196] gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196] Length = 586 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTP+N ++G +E++E + NE + + S LL+L+N++ Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEETDL----NEEQRMCTKTVVESSNALLSLVNDV 246 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+ +AG+ ++++ L++ + +L A EK+IEI I D+ Sbjct: 247 LDFSKADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGR 306 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV++NL+ NA+KFT G V + + T ++D G GI ++ T+ F Q Sbjct: 307 LRQVLINLVGNAIKFTET-GFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQ 365 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I++ ++ GG + SKL EG E LP Sbjct: 366 VNSETTRRYDGAGLGLAISKKLIELMGGTLGVTSKLGEGSEFTFALPLE 414 >gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 645 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L +++ A+ LS + + +AI Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISAMGEALKAIQQG 211 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + +TR+ A Sbjct: 212 D----YHTPMPVSDDAELGALARHINNLAENLHRASLE-------QQRSVAQLIQTREEA 260 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTQMTH----EQSEYATLATESTEHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360 +IN+ILD SRIE ++ +L ++V A ++ + + I P+L + Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRKLLLELHIQPALEAIN 376 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416 V D +RQ+++NL+ NA+KFT G+V V W + + ++D+G GI Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDDERLHFTCAVQDSGIGIDAER 435 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ +F Q +I G GLGLPIA+++ GG S G +P Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESAEGSGSLFTLQIPL 493 >gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 622 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 11/270 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + +L V + + ++ + AE+ + +K+ FLA+MSHE+RTP+ ++G +E++ + P Sbjct: 210 LQQLRVNEQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARSALDP--- 266 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + IH SG+ LL+LI+ ILDL++IEAG+ EL + +V C+ +++ Q Sbjct: 267 -EQRRLLTTIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNIQ 325 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 +K I + + P + V D +RQ+++NLL NA KFT G++ + V + Q Sbjct: 326 DKPIVLEAQFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEA-GKISLLVTTSGYGSQAW 384 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 SI+D G GI + F Q G GLGL I ++++ G S Sbjct: 385 LDFSIRDTGIGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFTS 444 Query: 461 KLREGVEVIAILPNT--RVLNFIPEDNHES 488 + G LP V +D+H + Sbjct: 445 EPGVGSTFSFSLPLALFSVSEIPIKDDHAA 474 >gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] Length = 935 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 95/269 (35%), Positives = 150/269 (55%), Gaps = 10/269 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 IA L V ++ + RAE EN AKS FL+ MSHE+RTP+NAI+G + +I ++ P Sbjct: 536 IASLRVKNAIMQKDVIRAEAENKAKSEFLSRMSHEIRTPMNAIVGTTALIAMKDDIP--- 592 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E+ K + + + Q+LL LIN+ILD+SRI+ G ++E SL ++ E M+Q +++ Sbjct: 593 ESIKGNLAKLKATSQYLLGLINDILDMSRIDNGMLSIAEEDFSLQQLLDELCSMMQSQSK 652 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 + I + + S + D ++QV++NL+SNA+KFT GG VH+TV T+ Sbjct: 653 AREIALCCETGFRHSDLKGDAIRLKQVLMNLVSNAIKFTPPGGTVHLTVEETAATDLQAV 712 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GI ++ + SF Q QG GLGLPI+Q+I+ GG ++S Sbjct: 713 YLFKVTDTGIGIRAEDLERIFESFVQTGANRMR-SQGTGLGLPISQNIVQLMGGTLRVKS 771 Query: 461 KLREGVEVIAILPNT--RVLNFIPEDNHE 487 K+ EG E +P + + ++ PE + Sbjct: 772 KINEGSEFSFSIPLSFGKHIDLKPESATD 800 >gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1119 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 44/377 (11%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 ++ L ++ + + +S ++ ++++ ++ + Sbjct: 564 VMAVIELASFHSFDEVHRALMESLMEMVGVTVNTITANTRTEELLG-------------- 609 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 LA L L +SN ++ ++EV S ++ R Sbjct: 610 -----ESRRLADELKARTDELQMQQKELRRSNAELEEKAELLARQNQDIEVKNSEIEQAR 664 Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + EE + KS FLA+MSHELRTPLN++L + ++ G L E EY Sbjct: 665 QELEERANQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNLT-ERQVEYAE 723 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IH +G LL LIN+ILDLS+IEAGR ++ + I++ +V + + ++K +E+ Sbjct: 724 TIHGAGSDLLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQKGLELRV 783 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG------------- 398 ++ PS+ ++ DE+ ++QV+ NLLSN+VKFT G V + V Sbjct: 784 RVAPSVPAHLFTDEQRLQQVLRNLLSNSVKFTET-GHVELVVDTVGDVVLGGPEDSNEVT 842 Query: 399 --RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++ D G GI + +I TV +F Q G GLGL I++ I GG Sbjct: 843 LEPAVSFAVSDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAKLLGGGI 902 Query: 457 LIRSKLREGVEVIAILP 473 S+ G LP Sbjct: 903 RAESQRGRGSTFTLFLP 919 >gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1419 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 6/317 (1%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT-YHLFKSNVKILSCQA 219 ++ +P + + + + + + ++ L +++ + + Sbjct: 963 LLARIARYPHLAPIYRRYDFQSWIALPLVVESKSVGGLLLSFQEFKQLSQADREFILALT 1022 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + + R AE+ N K FLA +SHELR+PLN ILG++++++ + Sbjct: 1023 RQCAQAIVRAQLYEAERQARAEAEQANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPF 1082 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P + + + I R+ + LI ++LD+SRI G+ L+ ++++L+ ++ + + Sbjct: 1083 SP---DKAAKALATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETV 1139 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 +L A+ K I++ ++P + + D ++Q++ NLL+N VKFT GGRV V + Sbjct: 1140 RLSAETKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRV-DT 1198 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI +P V F Q G+GLGL I + + HGG Sbjct: 1199 FAQLQVQDTGKGINAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAAD 1258 Query: 460 SK-LREGVEVIAILPNT 475 S G LP Sbjct: 1259 SPGEGLGATFTIRLPLQ 1275 >gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1119 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 133/260 (51%), Gaps = 10/260 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 I+E + + + +++AE+ + KSRFLA+MSHE+R+PLNAILG E++ Sbjct: 466 LFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLD 525 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ++ ++ + + +G LL+ IN+ILD S+IEAG+ L +V + + Sbjct: 526 SSL----SKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVL 581 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +L+ +A EK +E+ ++ ++ V D++ +RQV+ NL+ NA+KFTA G + V + Sbjct: 582 QILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTAS-GTITVEMWI 640 Query: 396 TSGRGQYI----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + D+G GI+ + F Q + +G GLGL I ++ Sbjct: 641 PDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITM 700 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG ++S+L +G Sbjct: 701 MGGTIELQSELGQGSRFTFY 720 >gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] Length = 1963 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 105/424 (24%), Positives = 176/424 (41%), Gaps = 35/424 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + L V ++ + L + L + +L + ++ Sbjct: 1202 FRPGETLVGTAAREKRVLTVNKVPVDYIKISSGLGQATPAQVVVLPLLFEGKVLGVIELA 1261 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206 + F FL+ ++A S I + L Sbjct: 1262 TFAQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1321 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 L +SN ++ A +++EV + R+ EE KS FLA+MSHE Sbjct: 1322 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1381 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L+++ E+ I+ +G LL LIN+ILDLS++EAG+ Sbjct: 1382 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1440 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 E+S + I+L+ +V + EKN++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1441 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1500 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G + ++ G+ S+ D G GIAEG++ Sbjct: 1501 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1560 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1561 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPLHPGD 1620 Query: 479 NFIP 482 P Sbjct: 1621 VPAP 1624 >gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] Length = 1117 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 93/256 (36%), Positives = 152/256 (59%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AE N K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ Sbjct: 860 RDITQWKRTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPI 919 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N Y EY GDI RSG+H+L+++N++LD+S+IEAG EL SA+ L + V E + ++Q + Sbjct: 920 GNPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQPQ 979 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + S+ V AD + ++Q+ LN+L+NA++FT GG++ V+ + + Sbjct: 980 ANSQRVIIRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSVI 1039 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + I+D G G+ E+ + F Q + + +G GLGLP+ +++ + QF I S Sbjct: 1040 LRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSAP 1099 Query: 463 REGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1100 NEGTLVEISFPSQRVL 1115 >gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio angustum S14] gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio angustum S14] Length = 1311 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 10/258 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + E +++ +KSRFLA MSHE+RTP++ IL E++E Sbjct: 655 ITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTT--- 711 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ ++ +SG++LLN++N++LD S+IEAG+ ++ S ++ D++ E + + AQ Sbjct: 712 -ELRQIHHNLSQSGRNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQPHSIHAQ 770 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399 +K I +DP+++ + DE + Q++ NL++NA+KFT G +H+ V + Sbjct: 771 QKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKFTVQ-GNIHLAVDMIQESASQQ 829 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 SI D G GI ++ + F Q G GLGL I + GG+ + + Sbjct: 830 RLTFSIIDTGIGIKPEDLQRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMGGEIVAK 889 Query: 460 SKLREGVEVIAILPNTRV 477 S + G +P V Sbjct: 890 SDINIGTTFSVTIPFPVV 907 >gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] Length = 1692 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 9/239 (3%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLNAI+G S ++ + P + Y+ I SG LL ++ +ILDL Sbjct: 1103 FLANMSHEIRTPLNAIIGMSGLLLRTNVTP----EQRSYVSAIQSSGNALLEMLADILDL 1158 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 SRIE G+ EL S S+++ V CI +L ++A EK IE+ ID + V D +RQ Sbjct: 1159 SRIEEGKLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDEDVPELVLGDATRLRQ 1218 Query: 371 VILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 V++NLL NA+KFT G + V + + ++D G GI ++ + +F Q Sbjct: 1219 VLVNLLENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQV 1278 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +I G GLGL I++ ++ GG+ S G + RV E + Sbjct: 1279 DSSITRRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGSTFHFTI-KARVSERSQERSD 1336 >gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1148 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 113/469 (24%), Positives = 194/469 (41%), Gaps = 21/469 (4%) Query: 20 GDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLIT 79 + + + + F + + L L + ++ ++ + + Sbjct: 274 RERRRALNAELAELSIALQLAASPAAFADALLNFLAPQLSMGLALFYVRDAGGETFQAVG 333 Query: 80 LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139 ++L + + G+ R ++V + L + + Sbjct: 334 GYACDPGVALRESFAIGEGLPGQCVASRRTIIVEGLPTTTRVIGSGLTSGPPDIVVCVPV 393 Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + +L L + F + L +V L+ ++ ++ ++L Sbjct: 394 SSAEGVLGVLEFARYGAFEDSHKELLDLAMPIVGLNLG-LLQRNLKTVALLERTRLQAEE 452 Query: 200 FTYITYHLFKSNVKILSCQA----EKDDLIAELEVAKSLSD---ETRKRAE-------EE 245 T L S ++ + D L+ + + ++ ++ R+ AE E Sbjct: 453 LRAQTDELQASEEELRLQREELQIANDRLVEKKQRLEAQAEDLAAARRDAERQVEELAEA 512 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS+FLA+MSHELRTPLN+IL ++ + + + + E I SG HLL LI Sbjct: 513 SRYKSQFLANMSHELRTPLNSILILADTLADDD---ELDAEHTESAKVIGESGHHLLALI 569 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WAD 364 N+ILDLS+IEAGR EL E ++ + D + A K + + + P SV AD Sbjct: 570 NDILDLSKIEAGRLELVEESVRIDDALASIARTFAAPADRKGVALTVETAPGAPSVIRAD 629 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + QV+LNL+ NAVKFT G V VT G S+ D G GIA +I +V T+F Sbjct: 630 GRRLIQVLLNLVGNAVKFTDR-GEVRVTASPM-DGGVRFSVSDTGVGIAPNQIESVFTAF 687 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q G GLGL I++ ++ GG+ ++S L +G ILP Sbjct: 688 QQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQSILGQGSVFSFILP 736 >gi|332532002|ref|ZP_08407886.1| histidine kinase response regulator hybrid protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038629|gb|EGI75072.1| histidine kinase response regulator hybrid protein [Pseudoalteromonas haloplanktis ANT/505] Length = 725 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 122/270 (45%), Gaps = 11/270 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVA---KSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L K + L + L L+ +E +K A+ N K RFLA+MSHELRTP Sbjct: 150 LGKEVIAQLELRLNNRKLATALKQQQTHNKNLEELKKEADTANTLKGRFLANMSHELRTP 209 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L+ IL +E + +N + I S L N++N+ILD S+IEAG+ + Sbjct: 210 LHGILNLAEF----GLAETSNIEKDNALKSILSSANILSNIVNDILDFSKIEAGKLNIEN 265 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 +L +++ I L +A +K I+ ID ++++ + D + Q++ NL SNA+KF Sbjct: 266 INFNLSEVINNVINPLMKQATDKGIKFIPSIDKNIATTLKGDPVRVSQILNNLCSNAIKF 325 Query: 383 TAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G +V V + + I D G GI++ + F Q + G G Sbjct: 326 TQQGQVEFKVTVKENLLNTQNIVFEIIDTGIGISKAAQQNLFQEFHQADSSTSRKYGGTG 385 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 LGL I + G+ SK +G Sbjct: 386 LGLSICTKLSDLMNGKINFTSKEDKGSVFT 415 >gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] Length = 353 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 14/350 (4%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + A L ++ Y SF + V+ I+ + + L Sbjct: 8 FLNALAVSLSIGIVNYYFQHSWFYFAITSFISLFVSFIVFYILMEK--YVYSKIKIIYKL 65 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS---LSDETRKRAEEENLAKSRFLA 254 + L + + +S D E AK DE ++ A + + FL Sbjct: 66 IHSLKLGKDLKDALGEYVSPDPINDVEQEVKEWAKEKKIEIDELKREA----IFRKEFLT 121 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ++SHEL+TPL +I G+ EV+E + + E + ++ I + L LI ++ ++S++ Sbjct: 122 NLSHELKTPLFSIGGYLEVLEDSDLT--DVEETQRFLKKISNNVDRLSILIKDLDEISKL 179 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 E+G L+ + +++E + +++L A++ +IE+ K + + V AD +RQV++ Sbjct: 180 ESGEIPLNIKKFDITVLIKEVLELMELEAEKHHIELLFKQKYDVPTFVMADRDKIRQVLV 239 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL+ N++K+ G VTV + + + DNG GI E + + F + + Sbjct: 240 NLIGNSIKYGKENGTTFVTVFEMHDQ-ILVEVTDNGIGIEEKNLKRLFERFFRTDFSRSR 298 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIP 482 G GLGL I + I+ H +RS G L + L+ IP Sbjct: 299 NIGGSGLGLAIVKHIVEAHDQAINVRSTPGIGSTFGFTLQKAKTPLSTIP 348 >gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1043 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 8/258 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E I + A+ + ++ A + N AK F++ MSHE+RTPLNA++G S ++ + Sbjct: 646 VEVLIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIED- 704 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + +E + + S +L+ LIN++LD +++E G EL ++ +++ ++V + Sbjct: 705 ---NPSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNS 761 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT 396 LQ +A+ K+I I ID L + D+ + Q++LNL+ N+VKFT GG + + + Sbjct: 762 LQYKAEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQ 821 Query: 397 SGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + I + D G GI ++ TV SF Q G GLGL I + ++ H Sbjct: 822 TAGQVRIRFEVSDTGIGIPPDKLNTVFESFKQAQTDTTRLYGGTGLGLAITKRLIELHDS 881 Query: 455 QFLIRSKLREGVEVIAIL 472 + + S + + Sbjct: 882 RINVESVYGHSSKFWFTI 899 >gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3] gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3] Length = 466 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + H + Sbjct: 157 LIYDMGLILAPLAIAMILITIWIGRKIIIA----ITKPLSQMERVANHFATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + ++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMA----HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 444 ESEKGKGTTVFIKL 457 >gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 672 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 11/259 (4%) Query: 223 DLIAELEVAKSLSDE------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 I E A+ + E R++AEE + K FLA +SHELRTPLN+ILG+++++ Sbjct: 264 RDITERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRA 323 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ++ + + I R+ + LI ++LD+SR+ G+ L + L ++ + Sbjct: 324 RR---IDEKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAV 380 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 +Q A K I++ +ID ++ V D + Q+ NLL+NAVKFT GG V V + Sbjct: 381 EAVQPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQG 440 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 Q + ++DNG GI+ + + F Q G+GLGL I + ++ HGG Sbjct: 441 EIHAQLV-VRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTA 499 Query: 457 LIRSK-LREGVEVIAILPN 474 S +G LP Sbjct: 500 AAESAGKGQGATFTVRLPL 518 >gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonadales bacterium TW-7] gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonadales bacterium TW-7] Length = 920 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 155/376 (41%), Gaps = 22/376 (5%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI- 179 W ++T T + + L A+ I + F+ + L + + Sbjct: 411 WQVITFYNRKHLTKVVASAWLPTILFSAVLIFLVVLFIHHLSNLLVQPIIGLTNLMHGFD 470 Query: 180 --MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD- 236 H S + F + L S + + + DL +L + Sbjct: 471 KSEKQHFNTESSWYEVLQLQEQFKMLGSALRDSIESLQASNIKNQDLNKQLSQFNQQLEV 530 Query: 237 ----------ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + K A E N AKS+FLA+MSHELRTP+N ILG EV+ + Sbjct: 531 KVAEQTDELTKAVKSANEANKAKSQFLANMSHELRTPMNGILGMGEVLLR---DSTLTDE 587 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ + +S ++LL ++N+ILD S+IEA ++S A L + + Sbjct: 588 QRDLLETQQKSSKNLLQILNDILDFSKIEANAMQISPRATLLAPFIENIHSLFSPIIHSN 647 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 N+E + P L + D+ + Q+I+NLLSNA KFT G V ++ + + +S+ Sbjct: 648 NVEFIIQRSPDLPDCLNVDDLRLNQIIINLLSNAQKFTQA-GFVRLSFDYKDEQ-LTVSV 705 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D+G GI + + + + F Q ++ G GLGL I Q ++ G+ + S G Sbjct: 706 SDSGIGIEKEQQLLLFSEFTQADASVARKYGGTGLGLAICQGLIKKMEGEITLNSVPGLG 765 Query: 466 VE--VIAILPNTRVLN 479 P ++++ Sbjct: 766 STIKFSIHAPKAQIVD 781 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E +KRAE + AK+ F ++SHE RTPL +LG E + + L TYK+ I Sbjct: 327 QEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQD--TALQESTYKQPIE 384 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 HR+ LL L+N +LD SRIEAGR + S + L+ + + + + +E+ Sbjct: 385 ATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLELSV 444 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 +P + V+AD + +V+LNLLSNA K+T G + V + + + + D G GI Sbjct: 445 DCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLK-GHIGVQLTAEADG-VVLRVSDTGVGI 502 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E+P + F + + A +G G+GL + ++ HGG + S+ EG L Sbjct: 503 PAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFTVRL 562 Query: 473 PNTRVLNFIPEDN 485 P + + +P+D Sbjct: 563 PLGK--DHLPQDQ 573 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 108/280 (38%), Gaps = 30/280 (10%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + L +++ + + + N +F SH+L+ PL I F ++++ Sbjct: 878 RYRQLSTALDEQVQQRTAELQASIHDLQRSNDNLQQFAYVASHDLQEPLRKIQSFGDLLK 937 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + L +Y+ + + + LI ++L SRI + +SL + + Sbjct: 938 NQYADNLG--EGIDYLKRMQTAANRMSTLIRDLLSFSRITTRQEV--TETVSLAETLSMV 993 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-------- 387 ++ L++ QE E+ L +V D + Q+ NLLSNA+KF Sbjct: 994 VLDLEVMIQETGAEMRIHP---LPTVLGDRSQLIQLFQNLLSNALKFRRKSSAGVSVPPV 1050 Query: 388 -------------RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 V + I + DNG G E + + F + KS Sbjct: 1051 VEVSAQLVNVSELPSTVRPTRSVAAYYRIDVTDNGIGFNEKYLDRIFQVFQRLHG--KSE 1108 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 QG G+GL I + ++ANHGG +S+ EG LP Sbjct: 1109 FQGTGIGLAICEKVVANHGGVITAQSQPGEGATFSVYLPA 1148 >gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] Length = 988 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 321 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 378 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 379 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 438 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 439 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 491 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 492 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 547 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 548 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 607 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 608 IGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 666 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 667 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 726 Query: 469 IAILPNTRV 477 LP Sbjct: 727 TVALPLREA 735 >gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1560 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 10/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL K + ++A+ + AKS FLA++SHELRTPLNA++GFSE+++ G + Sbjct: 1164 ITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQ---GGDVAA 1220 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ I +G LLNLI ++LDLS++EA + L + +V+E + + +L+A Sbjct: 1221 AEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAVFRLKAM 1280 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----R 399 EK++++ + + D +RQV+LNL+ NAVKFT+ G V V + Sbjct: 1281 EKDLKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSA-GSVSVRAVFQPDPGGETG 1339 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D GPGI+ + F QG + +G GLGL I+Q ++ GG+ + Sbjct: 1340 MLIIRVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRMGGEIRL 1399 Query: 459 RSKLREGVEVIAIL 472 S+L G + Sbjct: 1400 ESELGSGSVFTVRI 1413 >gi|255526178|ref|ZP_05393098.1| multi-sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296185072|ref|ZP_06853482.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255510161|gb|EET86481.1| multi-sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296049906|gb|EFG89330.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 606 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 8/285 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE--EENLAKSRFLASM 256 F++ L I+ + + E+ KS+ E + E E + K+ F A++ Sbjct: 293 FYSGYIGRLSDGRNIIIRVAMDITEKKHMEELQKSIEKERMRLLEIKEYDRIKTDFFANI 352 Query: 257 SHELRTPLNAILGFSEV----IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 SHELRTP+N I +V ++ + YK YI + ++ LL L+N ++D++ Sbjct: 353 SHELRTPINVIFSAIQVHKLKLKDCNFNDNFPDKYK-YINIMEQNCYRLLRLVNNLIDIT 411 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +I++G ++E ++ ++ + + + + K + + D + D + M ++I Sbjct: 412 KIDSGYLVINEINCDIVSLIEDITLSVADYIENKGLSVVFDTDIEEKIIACDPEKMERII 471 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNLLSNAVKFT GG + V + I +KD G GI + ++ ++ F Q ++ Sbjct: 472 LNLLSNAVKFTLRGGSIFVNIE-NGTESICIRVKDTGKGIPKEKLDSIFERFVQVDKSLT 530 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +G G+GL + ++++ H G + SK G E I +P V Sbjct: 531 RENEGSGIGLSLVKALVELHEGTISVNSKEGYGSEFIIHIPCKLV 575 >gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri] gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] Length = 744 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 17/327 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L S L A++ + + + L + L + ++ + +S + Sbjct: 273 LEQRFIYSVVLSFFVLIAIAVLIRGLFEHKILLSLNSLLKYTNTVSKNETRSEYQGCGIL 332 Query: 219 AEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 E D + +LE S E + + AE+ KS FLA MSHE+RTPLN ILG S Sbjct: 333 -EFDQIGEKLEQTFSELIEAKEDSYKAQRAAEKLAQVKSDFLARMSHEIRTPLNGILGIS 391 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + N ++ + +H+ G+HLL ++N+ILD S+IE + +++ + L D+ Sbjct: 392 SLLKSSNL----NREQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDV 447 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + KN+ + + + +D+ + Q++ NLLSNAVKFT G+V Sbjct: 448 LENINAIYFPICKNKNVFFSIENHVNPDVFINSDQVRLTQILFNLLSNAVKFTEK-GKVK 506 Query: 391 VTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +T+ Y S+ D G GI E + F Q + G GLGL I + Sbjct: 507 LTLSLNKHNSDYYLQFSVDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGLGLAIVKQ 566 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 ++ G+ I S + G ++P Sbjct: 567 LLDLLKGKITINSTIGVGSTFSVLIPV 593 >gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 507 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 2/243 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I E + + + AE+ N KS F+A+MSHELRTPLNAI+GFSE++ + G L Sbjct: 267 EDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIGFSEILIEKKFGDL 326 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N+ +Y+ +I SG+ LL +IN IL++S+IE+G E++ ISL D++ + ++ + Sbjct: 327 -NDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLGDLIEDLKEDIKEK 385 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++ + +I ++ ++ D + + +L+L+ NA+KF+ V V++ Sbjct: 386 LPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHVEVSLESV-DEMIA 444 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D G GI E +I + F Q + G+G+GL I + I HGG I+S+L Sbjct: 445 FKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAELHGGGLAIKSEL 504 Query: 463 REG 465 +G Sbjct: 505 EKG 507 >gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 549 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 148/257 (57%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + ++ S +R+ A+ N AKS FLA+MSHELRTPLNAI+GFS+ + + G Sbjct: 294 RQLERMDRTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGIPGHT 353 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+G + S +HLL+LIN+ILDLS+IEAG E++ + L ++ EC+ +++ + Sbjct: 354 CQSRCQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEIVRAK 413 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ KNI + V D + +RQ++LNLLSNAVKFT GGR+ + SG+ Sbjct: 414 AESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAECDSGQLA- 472 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +++ D G G+ + EI LT FGQ + E G GLGLP+++ + GG + S Sbjct: 473 LTVNDTGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVTSIP 532 Query: 463 REGVEVIAILPNTRVLN 479 G V LP +R L Sbjct: 533 GRGTTVTISLPLSRPLP 549 >gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163] gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163] Length = 466 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 149/352 (42%), Gaps = 15/352 (4%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 + V + EY+ S + + L +L F + A ++ Sbjct: 127 MLYVARMSSNGEYIFRLASPYSGMQEYLIMLLPAVLLSFAIAFFASSMEAERFSQSITRP 186 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + DIS + + Q E + + E +R E Sbjct: 187 LQDISRE---------MMKVDGDYADLHFDRCPYQ-EINVIADTTTKMSRNVKEYLERLE 236 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +E + F ++ SHEL+TP+ +I G+ E++E LN ET +++ I + + + Sbjct: 237 QEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETTHDFLKRIKKEAMRMTS 294 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+++IL +SR+E+ + I + D++ E + L +A E+ + I ++ + ++ A Sbjct: 295 LVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHKQFES--FAIRA 352 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + M ++ +NL+ NAVK+ G + V + ++++D+G GI + + + Sbjct: 353 DLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFV-LAVRDSGVGIPQESLNRIFER 411 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + + G GLGL I + ++ + G + S++ +G LP Sbjct: 412 FYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLPVA 463 >gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein [Teredinibacter turnerae T7901] gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter turnerae T7901] Length = 757 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 8/285 (2%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKSRF 252 T + + I+ + + + +LI E EV K + A N AKS F Sbjct: 476 TLVLWLELISGSVVVILIGLFMVFIMNRNLIVEKEVRKKTQELTQALDDARHANSAKSLF 535 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LASMSHELRTPLN+I+GFS + + ++Y+ + I R+G+HLLNLIN+ILDLS Sbjct: 536 LASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKSYRS-LEVIERNGRHLLNLINDILDLS 594 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 ++EAG+ + +SL ++ E + L A+ K + + K+ +++V+AD+K + QV+ Sbjct: 595 KVEAGKMSIDREWVSLKTLLDETVTSLTPLAESKGLTLELKM-VEVANVFADQKRLAQVL 653 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 LNL+SN +K+T+ GG + ++ S G I + D G GI +I V + Q Sbjct: 654 LNLVSNGIKYTSTGG-ISISSRRESREGHEGVAIDVVDTGVGIKPEDIDRVFRRYEQLDE 712 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 S+E G GLGL +A+ ++ HGG+ + S+ EG LP Sbjct: 713 PSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYGEGSCFTCWLPL 757 >gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 627 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + +F++++SHELRTPL ++ + E + + + E++ ++ +I Sbjct: 380 DRERKQFVSNVSHELRTPLTSMRSYIEALNDGAW--RDEKVAPEFLKVTQDETDRMIRMI 437 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI----------EIFQKID 355 N++L LSR+++G +L +++ +V + + ++ I I + Sbjct: 438 NDLLSLSRMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFT 497 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NA+K++ GG + + T +SI D G GI + Sbjct: 498 KRDLWVELDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNN-VILSISDQGLGIPKK 556 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ V F + A A+ G GLGL I++ ++ H G+ + S +G LP Sbjct: 557 DLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYE 616 Query: 476 RVLNF 480 Sbjct: 617 EYSEE 621 >gi|190344318|gb|EDK35970.2| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC 6260] Length = 665 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 3 ALKTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 60 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 61 --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 118 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK++++ + D S + D +RQVILNL NA+KFT G Sbjct: 119 LKTLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKK 178 Query: 395 WTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 179 SSKVVEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 238 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + GG+ + S G Sbjct: 239 ILLMGGEIWVTSDYGSGSNFYFT 261 >gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1039 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 12/322 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + + P + A+ + DI M +T++ + + + + Sbjct: 568 AEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHL-RAVGRVDEGSGA 626 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + E + + E + +A N AK FLA+MSHE+RTPLN I G ++ Sbjct: 627 LVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLAD 686 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ++ P +E RS + L +L+ ++LD+SRI+AG+ E+ L +R+ Sbjct: 687 ASLAP----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVR 742 Query: 337 IMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + A + + + ID ++ V D ++QV+ NLL NA KFT G V + Sbjct: 743 ELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEK-GSVTLRAEH 801 Query: 396 TS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 S S++D G GI + + + T F Q K + QG GLGL I + I+ Sbjct: 802 LSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIR 861 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 GG S+ G V L Sbjct: 862 VMGGHLAFESEAGTGTTVYFTL 883 >gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria innocua FSL S4-378] Length = 254 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 29 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 86 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + +++ + + A EKNI++ + D Sbjct: 87 LALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRDK 146 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 147 LQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 205 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 206 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 253 >gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 929 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 99/270 (36%), Positives = 147/270 (54%), Gaps = 6/270 (2%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + +++ L+ I + A ++ A+ + AKS+FLAS+SHELRTP Sbjct: 428 SVRVVRNSAGELARFEGVAIDITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTP 487 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN ILG+++++ PL E +E I IH S +HLL LIN++LDLS+IEAGR EL Sbjct: 488 LNGILGYTQILRR---DPLLGEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHP 544 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 +L + + RA+EKN+ + + P L V DE +RQV+ NLL NAVKF Sbjct: 545 GDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKF 604 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 TA GG V ++ ++G G S+ D G GIA ++ + F Q + +A G GLGL Sbjct: 605 TAQGG-VVFSISSSAGGGLRFSVSDTGRGIAAADLSRIFEPFTQVGESTGAAT-GTGLGL 662 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I++S++ GG+ + SK G L Sbjct: 663 AISRSLVERMGGRLQVESKPGWGSRFWFDL 692 >gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 962 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 8/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + + A+ N AK+ FLA+MSHE+RTP+NAI+G + + +N Sbjct: 247 ISSQKAIEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALET----QDN 302 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + +S LL L+N ILD S++EA + ++ + +L + + + Q++AQ Sbjct: 303 DQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQVKAQ 362 Query: 345 EKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K +++ + D + + QV+LNLLSNA+KFT G V + + G Sbjct: 363 QKQLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTET-GHVLLKIDKR-GNELGF 420 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI++ + +F Q +I G GLGL I + ++ GG+ I SK+ Sbjct: 421 SVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIESKVN 480 Query: 464 EGVEVIAILPNTRVLNFIPEDN 485 EG LP + + P D+ Sbjct: 481 EGTNFAFSLPI-CIEDTEPSDS 501 >gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1816 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 95/270 (35%), Positives = 140/270 (51%), Gaps = 8/270 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ + AKS FLA+MSHELRTPLNA++GFSE++ +T+ Sbjct: 1413 ITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELLRNDTL---PR 1469 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ I+ +G LL LIN+ILDLS+IEAG+ ++ + RE + +L+A Sbjct: 1470 SEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIYSIFRLQAA 1529 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSG--RGQ 401 EK +E + DP L ++ D +RQ++LNL NA+KFT G R+ + S Sbjct: 1530 EKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRPESDEAGTL 1589 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I + D G GI+E T+ F Q A QG GLGL I+ ++ GG+ + S Sbjct: 1590 TIRVIDTGIGISEQGQKTIFEPFVQDHEVRGSHAYQGTGLGLTISSRLIGQMGGRMALDS 1649 Query: 461 KLREGVEVIAILPNTRVLNF-IPEDNHEST 489 K+ EG IL + R +PE ++ Sbjct: 1650 KVGEGSCFTVILEHVRYERTGLPEAAEKAP 1679 >gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1014 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 20/377 (5%) Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS-------ALSNFMLPYAVF 164 V + + + + A ++ + + AL+ + Sbjct: 224 VLAALSASPLDVPFALLYLRTKEDGPVTFAGAVGVVWEAAASPWPLEQALAGETVRVDDV 283 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 P+ + + S ++ I+ +G A I+ ++ + + E Sbjct: 284 ARHLPLAGGPWGEPVTSALLMPIASSGQGAPLGVLVVGIS--PNRALDEGYTSFYELLAS 341 Query: 225 IAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETM 279 L + + + +E RKRAE E + AK+ F +++SHE RTPL +LG E V+ T+ Sbjct: 342 QVSLALRNAQAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTL 401 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E + +HR+ LL L+N +LD SR+EAGR E S + L + Sbjct: 402 ----PEAAARELDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSF 457 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A+ + + P + + D + +++LNLLSNA KFT G + V + +G+ Sbjct: 458 RSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQ-GTITVRLRARTGQ 516 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ I D G GI ++P + F + A +G G+GL + Q + GG+ + Sbjct: 517 -AWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVE 575 Query: 460 SKLREGVEVIAILPNTR 476 S +G +LP R Sbjct: 576 SVEGQGSCFTVVLPEGR 592 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 16/334 (4%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 +L + + L F L + V + + + + A + Sbjct: 696 LILTDVMMPRLDGFGLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFS 755 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-EEENLAKSRFLASMSHELRT 262 L L + +S E R A + + FL+ SHEL+T Sbjct: 756 ARELVARVCSTLELSRMRR---------ESSLQEARAEALKRAVQVRDEFLSIASHELKT 806 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PL A E+IE +GP + + + R Q L L+ +LD+S++ GR L Sbjct: 807 PLMAFRLQLELIERS-LGPESRLSLASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLH 865 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + L ++V E + L+ + + +++ L + D +V++NLL NA+K+ Sbjct: 866 LEEVDLAEVVGETVEQLRGSLERAGCSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKY 924 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + V W +++ D G GI+ + + F + G+GLGL Sbjct: 925 -GEGKPLRVRA-WKEQGISRLTVADQGMGISPEDQARIFERFERAVPG--RQYGGLGLGL 980 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 IA+ ++ HGG + S +G +P R Sbjct: 981 WIARQVVEAHGGHIQVDSTPGQGTTFTVQIPQNR 1014 >gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 467 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 155/348 (44%), Gaps = 11/348 (3%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 P + + + + ++ + V S V +A + ++S+ V Sbjct: 124 FFTDPRDPSLDIMMGATRVSDKVLLAFFPVADVREPVRESIMLVWLAAAGAFLISI-VPA 182 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 ++ L + + K + + A +D++ +++ + E + Sbjct: 183 YLISRHFTRPLEEMGQLALRMGKGDFSVRFHTARQDEIGQLARTLDAMAAQ----LEAID 238 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 + FLA +SHELRTPL +I GF + + G + E + Y+ + + L L++ Sbjct: 239 RERQEFLAYVSHELRTPLTSIRGFVQGMLD---GTIPPEKQQSYLARVFSETERLRRLVD 295 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++L L R+ +G++ + L ++ ++ A EK +++ + L V+ADE Sbjct: 296 DLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFRTQGELP-VYADEG 354 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + QV +NL+ NA+KF+ GGRV V T + + D GPGI E+P + SF Sbjct: 355 RLVQVFMNLVDNAIKFSPPGGRVLVEAEKT-DGLLRVQVTDEGPGIPPEELPRIFDSFYS 413 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G A +E G GLGL I++ I+ HGG +R++ G +LP Sbjct: 414 G-TARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLPA 460 >gi|253580705|ref|ZP_04857969.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848076|gb|EES76042.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 927 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 142/264 (53%), Gaps = 12/264 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + + +AE+ N AKS FL +MSH++RTP+NA+LG+SE+I+ E L + +Y Sbjct: 531 QARKAKIQAEKANAAKSEFLFNMSHDIRTPMNALLGYSELIKRE----LTDPKLLDYQEK 586 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + +SG LL++IN +LD++RIE+G+ EL E + + DI + + Q A++K I + + Sbjct: 587 MEQSGNLLLSIINNVLDMARIESGKVELDEDYVKIRDIYQGIYKIFQAEAEKKCIHLKME 646 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYIS--IKDN 408 D V DE +++ LNL+SNAVK+TA GGRV + + I + D Sbjct: 647 YDVKHEHVICDETKNKEIFLNLISNAVKYTASGGRVTIRITELDCDRKDYVRIRTQVIDT 706 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G++E +P++ +F + G GLG+PI + + G + SK EG + Sbjct: 707 GIGMSEEFLPSLFEAFARERNTTDGKIAGTGLGMPIIKKYIDMMYGTIEVESKQGEGSKF 766 Query: 469 IAILPNTRVLNFI--PEDNHESTQ 490 L R+ + +D +S+ Sbjct: 767 TVTL-EYRIADKSYYEQDTEKSSD 789 >gi|148976729|ref|ZP_01813401.1| sensor protein TorS [Vibrionales bacterium SWAT-3] gi|145963842|gb|EDK29101.1| sensor protein TorS [Vibrionales bacterium SWAT-3] Length = 1004 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 223 DLIAELEVAKSLS---DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 L E + R AE+ + AKS FLA+MSHE+RTP+N +LG + +++ + Sbjct: 441 QLQQTNEKLNVEVTNHAKARSAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL 500 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 PL Y I+RSG++LL ++N++LD S+IEAG E+ ++ L +V++ ++ Sbjct: 501 NPL----QSGYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRIASFDLHQMVQDTYQLM 556 Query: 340 QLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTS 397 + RA EK + I+ + W D + Q++ NL+ NA+KFT G + +++ Sbjct: 557 EGRAAEKKLGFSYHIESDVQRYWRGDVTRISQILNNLVGNAIKFTDKGDVDIFISLDLED 616 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GI E E + +F Q + + G GLGL I++ IM G Sbjct: 617 ENRVMFEVSDTGVGIHESEQKCLFDAFSQTNSGRNT-TGGTGLGLAISKRIMLAMDGDIG 675 Query: 458 IRSKLREGVEVIAILPNT 475 + S+ EG + LP Sbjct: 676 VHSEEGEGSQFWFSLPLQ 693 >gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 870 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K +I I+++ LL LIN+ILDLSRIE+G + + +L +++ +L Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + S + D ++QV+ NL++NAVKFT G + + Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + + F + S QG GLGL I Q+I+ G + S+ Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGTITVTSEEGH 857 Query: 465 GVEVIAILP 473 G LP Sbjct: 858 GTRFTVRLP 866 >gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 754 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 10/270 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 LF V + ++ + +L + +++AEE N AKS FLA++SHE+RTP+N Sbjct: 338 LFFGVVAMYKDITDRKLIEKDLREKCEQLELLKQKAEEANKAKSIFLANISHEIRTPMNG 397 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I ++++LE + NE K+YI ++ S +L LIN +LD+S+IE+G + ++ Sbjct: 398 ITAAIQLLKLEDI----NEKQKKYIRILNDSANTVLRLINNLLDMSKIESGTFRINREPF 453 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 +L + + L + K +E+ +D ++ + DE +++++ NL+SNAVKFT Sbjct: 454 NLKETINNIYNSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNLISNAVKFT-D 512 Query: 386 GGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + V S +IKD+G GI + + +F QG+I+ G GLG Sbjct: 513 DGYISFRVSMISEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSMKKYMGTGLG 572 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 L I++ G+ S +G I Sbjct: 573 LSISKQFANLMNGEISFESSFGKGSTFIFT 602 >gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2] Length = 633 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 14/322 (4%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 L +L+ + + ++ + + + + I + + ++ +S Sbjct: 169 SLSKIAWLTIAITLFTVILVSLFIGKITQYFVVSPIGKIKDATSSIAGNHKRVSID-VSG 227 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + E +L ++E + + +RA+ N AK+ FLA MSHE+RTPLN I G + ++ Sbjct: 228 KDELSELAQDVEAMSADIENYVERAQAANKAKTDFLAVMSHEIRTPLNGIQGLATLLLDT 287 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + ++ K+Y D+ S L N+IN++LDLS+IE+G E+ + +L ++ + I Sbjct: 288 PL----DDKQKQYASDLRSSATILANVINDVLDLSKIESGMSEVDVTEFNLDSMLNDLIT 343 Query: 338 MLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 +L + A + + K V +D +RQ+++NL SNA+KFT G V VT Sbjct: 344 LLGINASANHTRLEYKSKNLDSVMVTSDVTKLRQIVINLASNAIKFTHK-GTVTVTASLK 402 Query: 396 ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 IS+KD G GI + + F Q +I G GLGL IA+ + Sbjct: 403 KVAGPSVEENRLVISVKDTGIGIEPDRLEHIFDKFTQSDSSISRRYGGTGLGLSIAKELS 462 Query: 450 ANHGGQFLIRSKLREGVEVIAI 471 GG + S++ EG Sbjct: 463 QILGGDVKVMSRVGEGSCFTMS 484 >gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 510 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ ++ A + L KS+FL++MSHE+RTP+NA++GF+ ++ + Sbjct: 111 IDKAKELETQLILSKDIAVKAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQLS----PR 166 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ + S ++LL LIN+ILD S+IEAGR E E+ S+ D+V + L +A Sbjct: 167 PEQMEYLKLLKFSAENLLVLINDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQKAN 226 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 EKNI++ +D L V D + Q++ NL+SNAVKFT G+V + Y Sbjct: 227 EKNIQLKLLMDHDLPDVVKGDPVRIGQILTNLISNAVKFTKE-GKVTIVASLHKKYDDYT 285 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GIA ++ + SF Q + G GLGL I + ++ + ++ Sbjct: 286 IVDFEVIDTGIGIAANKLDDIFDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKVK 345 Query: 460 SKLREGVEVIAIL 472 S+ +G L Sbjct: 346 SEPGKGSVFYFSL 358 >gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 571 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 88/443 (19%), Positives = 166/443 (37%), Gaps = 29/443 (6%) Query: 35 REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94 ++ + VLL + W +++ P+ + ++V A ++V Sbjct: 151 ADLDATVTTVRRITLSAAGVAVLLAMGLSFWLSRSLSEPLLEMSRVSVDMARGRFDRRVT 210 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT--IYKSATLLIALSIS 152 + G + + E + + + + + Sbjct: 211 VQRKDEIG-----RLAENLNLLAGSLDRSVGELAREKGKLESVVANMAEGVVAVDSSGEV 265 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 L+N + P + L + + + + + A L+ + + + Sbjct: 266 ILTNAPARNILKNGTVPELTTLFQEVLANGERGAVEIDLNGAHLLAQCSPLRHGDGAVFG 325 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + Q ++ E + F+A++SHELRTPL +I G E Sbjct: 326 AVAVLQDIT----------------ALRQLE---QMRRDFVANVSHELRTPLTSIQGIIE 366 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + G + Y+ H + L+ ++LDL+ +EAGR + A+ L +I+ Sbjct: 367 GLID---GVIPAAEAGRYLRVAHGESLRMNRLVQDLLDLAALEAGRADWELHAVELGEIL 423 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 I LQ EK + I +++ P L + A+E + QV+ NL+ NAV+F+ GG + V Sbjct: 424 DRVEIRLQAPRSEKGLAIRREVPPDLPPLLANENRLEQVLTNLVENAVRFSPPGGEITVA 483 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++++D GPGI ++P V F + + G GLGL I + I+ Sbjct: 484 AEKRPHNRITVTVRDQGPGIPPEDLPHVWDRFYRVEKSRARETGGTGLGLAIVKQIVEAQ 543 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 GG+ + S EG LP Sbjct: 544 GGEVAVESSPGEGASFFFTLPAA 566 >gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 984 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 11/242 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R +AE + AK+ FLASMSHE+RTPL++++G++E++ + I +G Sbjct: 492 RIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLD---DAELTQRQHLQASRIRSAG 548 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL ++++ILD S+IEAG+ +L +L ++ + +++ A+ K +EI ++DP+L Sbjct: 549 SALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPAL 608 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 + D+ +RQ++LN L+NA+KFT GRV + V S+ D G GIA Sbjct: 609 PRALVGDQNRLRQILLNFLNNALKFTRR-GRVVLAVEKAGDGAGGWPIRFSVTDTGIGIA 667 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-- 471 + + F Q +I+ G GLGL I++ ++ GG +RS EG Sbjct: 668 PEQQARLFKRFSQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVRSAPGEGSTFWFEVL 727 Query: 472 LP 473 LP Sbjct: 728 LP 729 >gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+] gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+] Length = 2424 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AEE AKS FLA++SHELRTPLN ++G SE++ + N E I S L Sbjct: 1936 AEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDSGL----NREQMEMADSIRVSADLL 1991 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357 L +IN+ILD SR+EA + +L A + ++VRE + + + + +KN++I Q I+ Sbjct: 1992 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINLP 2051 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIA 413 ++ D + QV+ NL+ N++KFT G + + +KD G GI+ Sbjct: 2052 PMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARIDEETPDKATLTFWVKDTGIGIS 2110 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470 + + + F Q + G GLGL I +S++ G + S+ G Sbjct: 2111 QQHLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMEGTIQLESEENVGTTAWFTV 2170 Query: 471 ILPNTR 476 + Sbjct: 2171 TFEKAK 2176 >gi|51832261|gb|AAU10314.1| two-component histidine kinase [Alternaria brassicicola] Length = 997 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 13/267 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + + +++ L + + R+ AE N KS FLA+MSHE+RTP+N I+G ++ Sbjct: 707 EMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQ 766 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 767 LTLDTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTI 822 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + RA E+ + + + + V D +RQ+ILNL+ NA+K T G V V Sbjct: 823 FNALKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKV 881 Query: 392 TVGWTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + + ++ D G GI ++ + +F Q + G GLGL I Sbjct: 882 AISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSI 941 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ ++ GG+ + S +G Sbjct: 942 SKRLVTLMGGRMWVESDAGKGSVFYFT 968 >gi|197104023|ref|YP_002129400.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196477443|gb|ACG76971.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 616 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 96/401 (23%), Positives = 173/401 (43%), Gaps = 22/401 (5%) Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147 L ++ + + + +V +R L+ + + + E + A LI Sbjct: 72 RLLRRWLRTSGEADQVRGYRRLALLSAVRVSTYLVPSVAMVLAGGLGEMAYFWVQAGTLI 131 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 A+++SA + + PV+VA + + + +L + Sbjct: 132 AIALSA--GALSRTIFWGFVTPVLVAAGVTCLTT--LPPAPAGAVLLGLAIMLALLAMIS 187 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE----------EENLAKSRFLASMS 257 + I A + +A + + D+ + N AKS FLA+MS Sbjct: 188 NNTTQAISGWHAAFNANLALVRELEIARDQAVAERAAADRAREEARQANRAKSNFLATMS 247 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTP+N +LG +++++ + + + + SG++LL+++N+ILD+S+I+AG Sbjct: 248 HEIRTPMNGVLGMAQLLKRD----EADPQQIARLDTLIDSGEYLLSILNDILDVSKIDAG 303 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R E+ L ++ + RA EK + + + V D +RQ++ NL+ Sbjct: 304 RLEILSRPEDLRLLLDRLVGFWVGRAIEKGLALNLTMGSGAPDFVLTDALRLRQILFNLV 363 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT GG + G + G S++D GPGIA G++P + F QG A Sbjct: 364 GNALKFTETGGVEVIVTGQPARDGVVLTRFSVRDTGPGIAPGDLPRLFDRFSQGDEAEIR 423 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I + + GG+ + S+L G +P Sbjct: 424 KFGGTGLGLAIVRQLAELMGGEVAVESRLGAGSTFHVEIPL 464 >gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 535 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 10/246 (4%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E R++A E + AKSRFLA+MSHE+RTP+N +LG S ++ + + +E + I Sbjct: 283 LVEARQQATEASRAKSRFLATMSHEVRTPMNGVLGMSALLATTDL----EPSQREMVNLI 338 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SGQ LL ++N+ILDL+ IE+GR+E+ + + ++VR +++A EK + + +I Sbjct: 339 EGSGQALLTILNDILDLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEI 398 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNG 409 DP V D +RQ++ NLLSNAVKF+ G V V + D G Sbjct: 399 DPVAEREVVGDPARVRQILSNLLSNAVKFSDR-GEVRVRCLMTQTADRAHDVTFEVGDTG 457 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ + + F QG ++ G GLGL IA+ + GG + S G + Sbjct: 458 IGMDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFT 517 Query: 470 AILPNT 475 LP Sbjct: 518 VKLPAA 523 >gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621] gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621] Length = 586 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578 >gi|16127853|ref|NP_422417.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236674|ref|YP_002519111.1| hybrid histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|13425375|gb|AAK25585.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965847|gb|ACL97203.1| hybrid histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 595 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 94/451 (20%), Positives = 169/451 (37%), Gaps = 18/451 (3%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVY 83 G P + + V S + + + +W + A+ Sbjct: 3 GGGAPMSAETKDIDLERAVASRRVNTYLRLSSTFAICATLHLVVGLRWVWIWGALYTAIQ 62 Query: 84 AANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143 L +++ + WR + ++ + + + Sbjct: 63 FLETWLALQLIKRPQSSPD--RWRRFSVIALPFLTSAVFGFLAIPLFASDARFAPTLGGM 120 Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L AL + + L A + P V L I++ + + Sbjct: 121 LLAGALMNVVIVHGGLRSATIAAATPYVGYLLVIPIVARQANPDAPLANALWFGALLLIA 180 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + + +AE D AK+ ++ R AEE AKS F+A +SHELRTP Sbjct: 181 AVAVASRTLHA-ALKAEAD--------AKTEAERRRHEAEEAVAAKSAFVAMISHELRTP 231 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 ++AIL + + E + K + I +G + L+N++LD SR+EAGR + + Sbjct: 232 ISAILAGAGRLHSEA----PEASSKVHAQLIADAGGLMRTLLNDLLDFSRLEAGRMSVEK 287 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKF 382 S +L + + + + K +++ ++ D ++QV+ NLLSNA KF Sbjct: 288 SPFNLRQSLSDTLRFWRPELARKGLKLRVVGASTIPQWTLGDAMRLKQVLNNLLSNAAKF 347 Query: 383 TAIGG-RVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 T GG V + + + + D GPGI E +P + T F Q + ++ G GL Sbjct: 348 TRSGGVSVTLRAEIVGDQVRLVVDVVDTGPGIPEAALPRLFTPFDQLNESVARLHGGSGL 407 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL I++ + GG + L +G Sbjct: 408 GLAISRELARLMGGDLTASNALGQGAHFRFS 438 >gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] Length = 1392 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 141/328 (42%), Gaps = 19/328 (5%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P+ + + + G+L L + + TY L + + L E E Sbjct: 774 APLRFTVLPHFYETWWFKLLVGVGLLGLMLGAYRWRTYRL-RKRQETLEAAVETR--TEE 830 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS-EVIELETMGPLNNET 286 L K ++ +R +E + AK+RF A +SHE RTPL+ IL + ++ T G + Sbjct: 831 LARQKEKTERQAERLQELDEAKNRFFAHVSHEFRTPLSLILSPLRDALQRATDGAASLSE 890 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + + + + L LI ++LDL+ +EAG EL L +V + +A++K Sbjct: 891 NQ--LRRMTTNAERLQRLIGQLLDLATLEAGGMELDRRPGDLAALVERTAEAFRSKAEQK 948 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------- 398 I + ++ P + D + + ++ NL+ NAVKFT GGRV + + T Sbjct: 949 GIALKTEMPPERVEMRFDPEKVETIVSNLVGNAVKFTPEGGRVVLRLRLTEDTPSGPAAD 1008 Query: 399 -----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 G I++ D GPGI E + F + A +G GLGL + ++ HG Sbjct: 1009 EAPAEGGVRIAVADTGPGIDPAEQARIFDQFERSGTNSTEAHEGTGLGLALTSELVELHG 1068 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFI 481 G + S G E I LP V Sbjct: 1069 GTIEVESTPGAGAEFIVHLPRMPVDTSP 1096 >gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 975 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ L +E E A++ + +RAEE + AKS FLA+MSHE+R Sbjct: 404 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 463 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+G +E+ E + E + + S + LL ++N++LDLSR+E+GR L Sbjct: 464 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 519 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380 S + R + ++ A K ++ I +V D +RQV+LNL+ NA+ Sbjct: 520 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 579 Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 KFT GG V +TV RG ++ D G GI + SF Sbjct: 580 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 638 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + G GLGL I++ ++ GG+ +RS+ +G E +P Sbjct: 639 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 689 >gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] Length = 1682 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 9/301 (2%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + M F+ +T + + DD+ E E A Sbjct: 863 VYNRLWQGEAVCREQELMRRDGSLFWARLTGKAVDIHDRSKGTVWVIDDITTERE-AFQT 921 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +K AE+ AK+ FLA+MSHE+RTP+NA++G + ++ + ++Y+ I Sbjct: 922 VRNAQKLAEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTDLTR----QQRDYLKKI 977 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S QHLL +IN+ILDLS+IEAG+ + L ++ ++ +A K +E+ + Sbjct: 978 QGSSQHLLGIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDV 1037 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGP 410 ++ + D + QV++N +NAVKFT G + + T+ R S+ D G Sbjct: 1038 GKTVPRSLVGDPLRLGQVLINYANNAVKFTERGSIVIRCDLAETAERDVVLRFSVTDTGI 1097 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI +IP + +F Q + G GLGL I++ + GG+ + S+ +G Sbjct: 1098 GIEAEQIPRLFQTFEQADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDSEYGKGSTFWF 1157 Query: 471 I 471 Sbjct: 1158 T 1158 >gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] Length = 2041 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 94/451 (20%), Positives = 179/451 (39%), Gaps = 15/451 (3%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGK 91 R++ L L V A + + P + + + + Sbjct: 54 APKRQLALLSCAIKGAACHTDMLLVTGRARVVFDAFGAIVIPQRYVQWMVTTPTMVYILS 113 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 K+ + + I + V + GL W +++ +L + Sbjct: 114 KISDFTPQQTATA---ICMDVVMVLSGL-MANFAPGPYLNWLMFSVSMLSFVGVLYMMGR 169 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITY 205 S + + + + T I SM + L + +++ F ++ Sbjct: 170 MVFSAVKEHSSPSSRRSLLFIYMCTLLIWSMFPVAWVLHLLNSSSPYGEYLNIFANFMAK 229 Query: 206 HLFKSNVKILSCQA-EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 LF S++ + + L+A+ + + + K +F++ MSHELRTPL Sbjct: 230 VLFSSSIMYGNYMTIAQRRLLAQQAAENAHRVRMIQELRDAVTRKDQFMSLMSHELRTPL 289 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N I+ S+ + G + N + ++ I S HLLN+IN+ILD++ ++ G+ + Sbjct: 290 NGIIQLSDALVRGAGGEM-NPKGQHFVKTIKNSSNHLLNIINDILDVAALKEGKLTIKHE 348 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 SL V + ++ A++ ++ I + +DP + AD + Q++ NL NA+KFT Sbjct: 349 LCSLAKAVEHVVDIVAPLARK-DVAIERSVDPHTPLIIADFSRVIQILYNLAGNALKFTH 407 Query: 385 IGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GRV V V ++ + + D G GI I + +F Q +++ G GLGL Sbjct: 408 R-GRVCVRVSPSADGSSVTLQVADTGIGIPPERISGIWGAFEQVDMSVTRKYGGTGLGLN 466 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I + ++ H G+ ++S G LP Sbjct: 467 IVKQLVEAHEGKIEVQSAEGRGTTFTVTLPV 497 >gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 469 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 3/293 (1%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A + T L + E E N K++F+ Sbjct: 160 AAFEAALTVAAVRNHYGQSIALRWLMRDITARKQAESHLHQVQLQNLELIESNRLKNQFM 219 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 +SHELRTP+NAILGFS+++ ++ I + +HLL +I EIL SR Sbjct: 220 GIISHELRTPMNAILGFSDLLLRRFHDRY-EPQQIAFLERILNNAKHLLLMIEEILAYSR 278 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 ++A R EL A L+++ R +Q A +K + + + PS V D +RQ+++ Sbjct: 279 LKAHRLELQLEAFDLLELARITAEEMQCMADQKALALELDLPPSPLVVCNDRTRVRQILV 338 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NLLSNA+KFT GRV + + I+++D G GI + F Q + + Sbjct: 339 NLLSNAIKFTDT-GRVTLAIAPGKAEKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTR 397 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI-PEDN 485 ++ G GLGL I S++ G+ + S+L EG LP I PE + Sbjct: 398 SQGGTGLGLSITSSLVTLMQGKIWVESELGEGAVFRIELPRNVPSPPIHPEQD 450 >gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 870 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K +I I+++ LL LIN+ILDLSRIE+G + + +L +++ +L Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + S + D ++QV+ NL++NAVKFT G + + Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + + F + S QG GLGL I Q+I+ G + S+ Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGTITVTSEEGH 857 Query: 465 GVEVIAILP 473 G LP Sbjct: 858 GTRFTVRLP 866 >gi|315125702|ref|YP_004067705.1| sensory box histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] gi|315014216|gb|ADT67554.1| sensory box histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] Length = 927 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 13/296 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + ++ + + L E++ ++ ++A + + Sbjct: 220 LETVAQQVNLLLKKVSKVQADDQAAKKELKKLQTSLETEVQSRTFELEKQTQKALKASET 279 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTP+N ++G +++ + + + I S LL+++++I Sbjct: 280 KTTFLATMSHEIRTPMNGVIGTIDLLRQTEL----DGAQQRLSTIIRESAFSLLSILDDI 335 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEAG+ + + S+ D + E +L A+ +++E+ I P + + + D Sbjct: 336 LDFSKIEAGKLNIDPTPFSVADTLEEVAKVLSSVAKNRHLELDLSIAPDIPNNLMGDSVR 395 Query: 368 MRQVILNLLSNAVKFTAIGG------RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPT 419 +RQV+ NL SNA+KFT+ G ++ V V + + DNG G+++ ++ Sbjct: 396 VRQVLYNLCSNAIKFTSTNGSTQGRVKISVEVAHNTADHFTLRFCVVDNGKGMSQSQLRK 455 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + F Q +I G GLGL I +S+ G + S G E LP + Sbjct: 456 IFSPFTQAESSITREFGGTGLGLSICKSLTELMLGTIHVTSHEGIGSEFTVELPFS 511 >gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 637 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK E K ++++SHE+RTPL A+LG++E + + + +EY+ Sbjct: 409 ERKEME---QMKDEMISAVSHEMRTPLTAMLGYTEFMLDN---EVPADQQREYLRITLHE 462 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L LI LDL R+ + + ++ + L ++ E + + ++ +I + Sbjct: 463 SEKLNELIGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITL--DCPSD 520 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L + D K +RQV NL+SNAVK++ GG V V I+++D G GI+ + Sbjct: 521 LPRICGDNKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKD-CVVITVRDEGIGISPQAV 579 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + + G GLGL + + I+ HGG+ + S L +G LP Sbjct: 580 ERIFERFYRVNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLPVA 637 >gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 466 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 EE ++ FL ++SHELRTPL+ + G++E + + E ++Y+ IH L Sbjct: 232 LEEVENSRREFLQNVSHELRTPLSYMRGYTEAMLEGM--TTSGEEREKYLRIIHNETARL 289 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+N++LDL+++E Y + + I +V + + A++K+I + ++D + + Sbjct: 290 TRLVNDLLDLAQLEGESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEVI-I 348 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QVI NLL NA+++T G V + + + +++KD G GI E ++ ++ Sbjct: 349 EGDADRLEQVISNLLDNAIRYTPEAGEVMMELKQ-NDHLAVLTVKDTGCGIPEEDLENIM 407 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + E G GLGL I + I+ HGG ++S+ +G + Sbjct: 408 DRFYRVHKPRTRNEGGFGLGLAIVKQIVWKHGGTIDVQSQPGKGTSISLTF 458 >gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] Length = 952 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 119/277 (42%), Gaps = 8/277 (2%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 I + + E + + E R +A KS+FLA++SHE+ Sbjct: 244 IMIILRDISDQITLKEMNTELQNKSELEQKRNLELMEARDQAVAATKIKSQFLATISHEI 303 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN ++G +E++ + N + I SG+ LL++ ++ILD S+IEA R E Sbjct: 304 RTPLNGVIGMAEMLLKTS---PLNTEQHDIAETIFGSGELLLSITSDILDFSKIEASRLE 360 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L I + + + K IEI DP + + D + Q++LN+ +NA Sbjct: 361 LEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFDPDIPHRLVGDPNRLVQIMLNMGTNA 420 Query: 380 VKFTAIGGRV-HVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 VK+T G + V+V I I+D+G GI E + + F Q + Sbjct: 421 VKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIGIKEEQRKHLFEPFHQIDASTTRKYG 480 Query: 437 GVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472 G GLGL I+ + GG L+ S G L Sbjct: 481 GSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSVTL 517 >gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 423 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L E + + +E + K+ F+A+MSHE+RTPLNAI+GF+ ++ T N Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+++ LL LIN+ILDLS+IE+GR + S + L DI +E ++ L+ Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + +W D + QV+LNLLSNA+KFT+ G + + + Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E ++ +V F + QG GLGLPI + I+ GG+ +RS+L Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G LP + E + S +C Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420 >gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78] gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78] Length = 1928 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + L V ++ + L + L + +L + ++ Sbjct: 1145 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 1204 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206 S F FL+ ++A S I + L Sbjct: 1205 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1264 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 L +SN ++ A +++EV + R+ EE KS FLA+MSHE Sbjct: 1265 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1324 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L+++ E+ I+ +G LL LIN+ILDLS++EAG+ Sbjct: 1325 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1383 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 E+S + I+L+ +V + EKN++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1384 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1443 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G + ++ G+ S+ D G GIAEG++ Sbjct: 1444 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1503 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1504 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 1559 >gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 737 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 7/296 (2%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 I + + +++ + A A I + +A +L + Sbjct: 295 ISTQGTMLVNIGILAAGAFLLVAVIIWAYLNKRRDAERLEARTRELNITQDR----LVIA 350 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + +AEE NLAKS FL+ MSHELRTPL AI+G+++V+ + + + + + + Sbjct: 351 KAKAEEANLAKSEFLSLMSHELRTPLQAIIGYTDVVIEDLYVEGMDHLSTD-LTRVVNNS 409 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q LL LIN +LDL++IE+G +L+ + L +V E I ++ + EKN+ + ++ Sbjct: 410 QRLLRLINGVLDLAKIESGHMDLTLEHLELHSLVNEAIDNVKPQFDEKNLPLETDLESIP 469 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D + + +ILNLLSNA KFT GRV + V + I+ +D G GI +P Sbjct: 470 EAALVDREKLLHIILNLLSNACKFTDR-GRVTLAVKHNA-NAITITCRDTGMGIDAAALP 527 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 V F Q + G GLGL I + GG + S+ G +P Sbjct: 528 FVFDRFQQVDSSATRQHSGSGLGLAITKQFCELMGGHITVNSEPGRGTHFKVEIPL 583 >gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 755 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 176/445 (39%), Gaps = 21/445 (4%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM---NSDIKI 100 +++ V+P+ L L + +++ AV A + + + Sbjct: 163 AVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFDITRANLLAQ 222 Query: 101 GEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 + L LV L + TL + + ++ + L Sbjct: 223 AQQQEALEAANASLKVQRAEARRLALVAENANDITRLLDREGRTLWANDAFTRVTGYTLA 282 Query: 161 YAVFLSF---------FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 A V+A ++A + L + + +F+ Sbjct: 283 EAKGKLLGDLIRDPDTSLEVLARISEARQAGRPLRVEILNRSKDGRTFWLETNQVPMLDA 342 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + I ++ + ++ R AEE AK+ FLA+MSHE+RTP+N ++G + Sbjct: 343 CGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEIRTPMNGVIGMA 402 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + NE + Y G I S LL LIN++LD+S+++A LS + Sbjct: 403 QLLRDSGL----NEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVSLSCTDFDPRAC 458 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + +L+ +A+ K +++ I + + D++ +RQ++LNL NA+KFT G+V Sbjct: 459 FEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNLAGNAIKFTER-GQVQ 517 Query: 391 VTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 VT+ G S+ D G GI + V F Q AI G GLGL I++ Sbjct: 518 VTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRFGGTGLGLAISRR 577 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + GG + S L G L Sbjct: 578 LAEAMGGSISVASDLGIGSCFTVRL 602 Score = 42.6 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 21/231 (9%) Query: 37 IITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNS 96 ++ + RV P F V+ + + A + +KV Sbjct: 24 LLLRYARGRVRVFPHRQAFAFAVSLLMGLILSPLAGAAGFGLHFLGDAIDTLYLRKVPGW 83 Query: 97 DIKIGEVYVWRIWLLVGQIAIGLC---------WTLLTLVEPGTWTPEYLTIYKSATLLI 147 + R V W + +P + + Sbjct: 84 LQRGASCRQIRRISTVTAGLHAAAVAAAASVPEWLGHVVPQPSLPDHGDPLLTLGLLTAL 143 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIM--------SMHVLDISLAGMLATALSF 199 AL+ + F P A V L+ A + S L ++ ML A+ + Sbjct: 144 ALNAGLVLPFHRPSAFVRLAVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGW 203 Query: 200 FTYITYHLFKSNVKILSCQAEK-DDLIAELEVAKSLSDETRK---RAEEEN 246 Y F L QA++ + L A K E R+ AE N Sbjct: 204 ALYFASRNFDITRANLLAQAQQQEALEAANASLKVQRAEARRLALVAENAN 254 >gi|332829689|gb|EGK02335.1| hypothetical protein HMPREF9455_01605 [Dysgonomonas gadei ATCC BAA-286] Length = 1351 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 10/244 (4%) Query: 232 KSLSDETRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 K+ + R +A EE NL K +F ++SHE RTPL I+ E N+ Sbjct: 817 KNELNIERLKAKKQEELNLTKMQFFTNISHEFRTPLTLIISPL----KEIEQTEPNQKRA 872 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + R+ LL LIN+ILDL +IE + ++ I+L+ V++ + + K I Sbjct: 873 HLMKMMLRNADRLLRLINQILDLRKIEYDKIQVHARPINLVLFVQDFVGLFTDIIDRKQI 932 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + +W D + + + NLL NA+K+T G + +++ + SI+D Sbjct: 933 SVSFNYEAREIPIWYDPDLLEKCLYNLLFNALKYTPDGNSIFLSIKQKNDGSVLFSIRDT 992 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GIA ++P + F QGS + S G G+GL + ++I+ H G+ + S++ G Sbjct: 993 GCGIAPEDLPHIFDRFYQGSFSQNS---GTGIGLHLVKTIVELHHGKVWVESEVGAGSNF 1049 Query: 469 IAIL 472 + Sbjct: 1050 TLYI 1053 >gi|288940186|ref|YP_003442426.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895558|gb|ADC61394.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 892 Score = 265 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 108/474 (22%), Positives = 186/474 (39%), Gaps = 21/474 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPI 71 V I D + + +++ + E + + + Sbjct: 291 VSDEIRRVMDWMAQDLETQIQVAEDRRRRLYEQHLKTCRERVMAAMRQGVRLQNLLTGAH 350 Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGT 131 A A ++ + E L I +L Sbjct: 351 QADLLGAVGAEGMALIAGSQVYTAGTTPEAERISQLAVDLRRHIDDDHS-SLFATDCLSD 409 Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 PE + + +A L+ L +++ + L + V + ++++ G Sbjct: 410 HLPETVDLGPTAAGLMFLRLASARDLGLLWFRAEQVRHVT--WAGNPDKAVNIGPDGRIG 467 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + ++ + ++ + L+ E LI E R +AE + AKS Sbjct: 468 PRQSFAAWQQTVRLRSWRWAQEELASATELGALIDI---------ELRHQAEAASQAKSI 518 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+R PLNA+LG + ++ + + P T E + I +G+HLL+LIN+ILDL Sbjct: 519 FLANMSHEIRNPLNAVLGMARLMRQQALIP----TQAERLDKIEVAGRHLLDLINDILDL 574 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IE G+ L ES + + I+R + ML +A EK +++ K+ S + D ++Q Sbjct: 575 SKIEDGKLTLEESEVRIEAIMRNLVAMLSDQAAEKGLKLCVKLQAWPSHLLGDSARLQQA 634 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQG 427 +LN SNA+KFT G V + + G ++D G GIA + + F Q Sbjct: 635 LLNYASNAIKFT-QYGSVTLRAFPEADLGDSVLGRFEVEDTGIGIAAEHLSRLFNEFEQL 693 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +I G GLGL + Q + GG+ + S L G + R I Sbjct: 694 DTSITRQYGGTGLGLALTQQLARLMGGEAGVESTLGVGSTFWFTVRLRRGTPSI 747 >gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus O46] Length = 546 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541 >gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus O11] Length = 546 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541 >gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21172] gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21193] Length = 546 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541 >gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus JKD6159] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754] gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus ST398] Length = 546 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541 >gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A10102] gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A10102] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus TW20] gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus T0131] gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21189] Length = 546 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 323 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 381 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 438 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 439 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 497 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 498 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541 >gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9635] gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9635] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 689 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 15/243 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG-------------PLNNETYKEY 290 E + K+ F++++SHELRTPL ++LGF+++I+ + K+ Sbjct: 197 EVDQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFPQVQTDNKKIQRTVRQVKDN 256 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I G+ L LIN++LD++++EAG+ + + + + +I+ I + K+I+ Sbjct: 257 VTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETKHIQF 316 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 +K++ L + D+ + QV++NL+SNAVKFT G + IS+ D G Sbjct: 317 IKKVETELPEISGDKDRLIQVLINLISNAVKFTQK-GTITCRATQRHS-EIIISVIDTGM 374 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA + P V F Q + +G GLGLPI + I+ +HGG+ + S+ ++G Sbjct: 375 GIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGSTFSF 434 Query: 471 ILP 473 LP Sbjct: 435 TLP 437 >gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 1156 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 3/269 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 445 LEQTNEQLAERTEALDRKNNELNQAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L+++ K + I+ +G LLNLIN+ILD++++EAG+ E+ + Sbjct: 505 SLILAKLLSENAEGNLSDDQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPEST 563 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 SL + M Q AQ+K ++ +++ P +V D + + QV+ NLLSNA+KFT Sbjct: 564 SLERLAEGLQGMFQPLAQDKGLDFEVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFT-E 622 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V + + +G G +++D G GIA + + +F Q G GLGL I+ Sbjct: 623 HGKVSLGISHQAGLGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRKYGGTGLGLSIS 682 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + GGQ + S +G ILP Sbjct: 683 RDLAHLLGGQISVDSSPGQGSVFSLILPV 711 >gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 553 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 330 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 387 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 388 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 445 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 446 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 504 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 505 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 548 >gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus COL] gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus str. Newman] gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948] gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus D30] gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus 930918-3] gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A9765] gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132] gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus COL] gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948] gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus 930918-3] gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus D30] gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A9765] gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01] gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131] gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus RF122] gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus RF122] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MSSA476] gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus N315] gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MW2] gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu3] gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9781] gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9763] gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9719] gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A9299] gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A8115] gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6300] gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6224] gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A5937] gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus ED98] gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A8117] gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819] gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus MR1] gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796] gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH70] gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus N315] gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MW2] gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9781] gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9763] gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9719] gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A9299] gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A8115] gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6300] gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6224] gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A5937] gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus ED98] gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A8117] gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus 04-02981] gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819] gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796] gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH70] gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus CGS03] Length = 554 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] Length = 1128 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 155/376 (41%), Gaps = 6/376 (1%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ V + K + + ++I + + F++ + + + + Sbjct: 332 GIDWALVVEVPESVAFARVNHLEKLFVVAMLIAIVLVVMASHYLSNFITSPLLKLTWAAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + +S + + +++ ELE L + Sbjct: 392 KVSAGDMDADMINTERKDEIGRLAVSFERMQRSIREKIQLIKQQN---EELESNLQLIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + N K FLA+ SHELRTPL+ ++G +E + GP+ + +K + I S Sbjct: 449 QNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITAD-HKYQLDIIISS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L L++++LD ++ G ++ SA+ L R + + K + I ++ Sbjct: 508 GQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLIGNKPLRIINQVPDE 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI ++ Sbjct: 568 PVWVCADPQRLEQVLYNLIGNAIKYTSE-GKIVISATVVDDN-IRVQVVDTGQGIPADQL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ G + S+ G LP Sbjct: 626 DHIFEPLIQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLPIATA 685 Query: 478 LNFIPEDNHESTQYKC 493 +ES+ ++ Sbjct: 686 EQIDAASQYESSHFQA 701 >gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 1065 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 162/398 (40%), Gaps = 38/398 (9%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G+ + + + ++ L +T + I + ++ Sbjct: 342 YVRISSSLGQARPANLIVFPILFEDRVL-GVIELASFTPFTEVHRDFLNQLMETIGVIVN 400 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + A+ + LAG L S L +SN Sbjct: 401 TIIANSRTDALLV-------------------ESQRLAGELQARSSELQVRQEELQRSNA 441 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLN 265 + A + ++E+ ++ R+ EE + KS FLA+MSHELRTPLN Sbjct: 442 DLEEKAALLERQNRDIEIKNIEIEQARQEIEERAQQLALASKYKSEFLANMSHELRTPLN 501 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++L + ++ L E+ IH +G LL LIN+ILDLS++EAG+ ++ Sbjct: 502 SLLVLARLLAQNPTRNLT-PKQVEFANVIHSAGSDLLQLINDILDLSKVEAGKMDVHREW 560 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 L +V + Q EK ++ ++ P + ++ DE+ + QV+ NLLSNAVKFT Sbjct: 561 ADLGKLVDDLQATFQPLTAEKGLDFAVEVAPDVPTRLFTDEQRLEQVLRNLLSNAVKFT- 619 Query: 385 IGGRVHVTVGWT--------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 G+V + + + + ++ D G GI++ + + +F QG Sbjct: 620 EDGQVALRIHTSHPLEPDSGATSKIAFAVVDTGVGISDENLKRIFGAFQQGDGTTSRKYG 679 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ + A G + S+ G LP Sbjct: 680 GTGLGLSISREVAALLDGDLRVESEFGRGSTFTLYLPL 717 >gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2] gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein C-term [Methanococcus maripaludis S2] Length = 614 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 21/330 (6%) Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 A+ S + ++ +++ + + L + ++ + N + Sbjct: 287 ALLNSVIQKIFFIAFSSLIIAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTG 346 Query: 222 DDLIAELEVAKSLSDE-----------------TRKRAEEENLAKSRFLASMSHELRTPL 264 D+L E ++DE + +E + KS L+ +SHELRTPL Sbjct: 347 DELEELAESFNKMADEIGKSDKKLKSDAHTLKTSFDELKEVDNLKSEILSIVSHELRTPL 406 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 AILG+ E+++ ET G L+ E KE+I I + L + + + DL ++ ++ Sbjct: 407 TAILGYVELLKDETAGKLS-EKQKEFISVISENSDRLKRITDNMSDLVTVDNKILDIKRD 465 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 I+L V + + A+ KNI + + +D + D+ + QV+ NL+ NA+KF+ Sbjct: 466 RINLKKEVNDILRSFDYFAESKNIVLLEDVDN--LDIKGDKSKIHQVLSNLIENAIKFSK 523 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 +V V +G+ ++ I D GPGI + + + F Q + K G GLGL + Sbjct: 524 KQTKVTV-MGFEDKGNIHLEITDQGPGIPKEHLGKIFDKFYQIDSSSKREVGGSGLGLAV 582 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + I+ +HGG + SK+ +G V + P Sbjct: 583 CKKIVESHGGSIWVESKIGKGTTVHVMFPL 612 >gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 389 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I++ + + ++RAEE N KS +A+M+HE+RTPLNAI+GF+ ++ + Sbjct: 143 ISKRKALEEELTAAKERAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IVDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G +++ S + L ++ E + + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +N+ + + + ++ D + Q++ +LL NA+KFT G V + + Sbjct: 259 SRNLVLAWDGEQLGAHIYTDRGRLIQILEHLLCNAIKFTLK-GTVRLGYRKKEEGRIWFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + F + QG+GLGLP+ + I+ G + SK+ E Sbjct: 318 VTDTGCGIPEEKKELIFERFVKLDD----FVQGLGLGLPLCKIIVDRLHGTIGVDSKVGE 373 Query: 465 GVEVIAILP 473 G LP Sbjct: 374 GSTFWFTLP 382 >gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1031 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 3/290 (1%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 L T + L + + + D EL +A++ + + KS Sbjct: 295 AHLETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKS 354 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD Sbjct: 355 EFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILD 413 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 +S++EAG+ E+ S+ +V + Q A EK + I ++ + D + + Sbjct: 414 ISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQTGAPTMLFTDRQRLE 473 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q++ NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 474 QILKNLLSNAIKFTEA-GSVSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADG 532 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I++ + A GG + S +G +LP V Sbjct: 533 TTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQ 582 >gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6] gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6] Length = 925 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 99/451 (21%), Positives = 173/451 (38%), Gaps = 47/451 (10%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV-----YVWR 107 + V LVA + P + L + M + + W Sbjct: 203 LILVFLVAEMLFLKLSLPGNEALKFLALGAGVWIATDTIYFMQILNETYQPGGLLDSGWV 262 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA-VFLS 166 L+ +A G+ + + Y A LPY + Sbjct: 263 AGYLLMGLA-GIAQGEAAKRGAFSANRDIEVRYDRAGW----------PLYLPYLCAAGA 311 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 FF +V + +S L +S+ ++ I + AE+ Sbjct: 312 FFMLVWSRDHNFAISFGSLSLSVGVIIGLVFIRQMIILNENALLYREAQLEIAERRKAEE 371 Query: 227 ELEVAKSLSDETRKRAEEENLA---K----------------SRFLASMSHELRTPLNAI 267 E++ +E R R L K S FL +MSHE+RTP+NAI Sbjct: 372 EVKRLNEDLEE-RVRLRTAELEATNKDLLVAKAKAEAAARAKSNFLDNMSHEIRTPMNAI 430 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G + +++ G ++++ I +SG LL +I++ILD S+I+ + EL Sbjct: 431 IGMARLLQ----GTDIKPEQRDFLDTIQKSGSALLAIIDDILDYSKIDGDKMELVNVPFD 486 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 L + + + ++ ++A EK +E+ ++ + + D +RQV++NLL NAVKFT G Sbjct: 487 LQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRLRQVLVNLLGNAVKFTDRG 546 Query: 387 GRV-HVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 V V+ G + +++D G GI+ + SF Q + + G GLG Sbjct: 547 DVVLKVSSRRLEGSDDKVELHFAVRDTGIGISPENQSELFQSFTQVDSSKTRSYGGTGLG 606 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I++ I+ GG+ S++ G Sbjct: 607 LAISRGIVERMGGRIWAESEIGTGSSFYFDF 637 >gi|298492023|ref|YP_003722200.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298233941|gb|ADI65077.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 593 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 20/257 (7%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + R++AEE + KS FLA++SHE+RTPLN ++G ++I G + E++ Sbjct: 324 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGLLKLILE---GMADGPEEHEFVQ 380 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 D H HLL ++N+ILD ++IEAG+ ++ + L ++ + ++ +A+ KN+ + Sbjct: 381 DAHDLSIHLLGILNDILDFAKIEAGKMDIRCGPVRLHELFNDVESFVRPQAEMKNLSLQM 440 Query: 353 KID--PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------SGR 399 ++ + + + + QV+LNL+ NA+KFT GG V ++ Sbjct: 441 QMPTTSDEIIILGNYQRLLQVMLNLVGNAIKFTHKGG-VTISADLVLKKAKGQSQPQHPG 499 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G G++ + + F Q + G GLGL I+Q ++ GG+ Sbjct: 500 IVKVRVADTGIGVSLDQQDKLFQLFSQVDGSRTRPHGGTGLGLTISQKLIEAMGGEVHFY 559 Query: 460 SKLRE--GVEVIAILPN 474 S L E G V +P Sbjct: 560 S-LGEELGSTVTFTVPL 575 >gi|163795590|ref|ZP_02189556.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179189|gb|EDP63722.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 577 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 115/351 (32%), Positives = 179/351 (50%), Gaps = 12/351 (3%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL--------STQAIMSMHVLDISLAG 191 + + L + + + + +P A +A + + + + + + G Sbjct: 227 FLLSGLQVMSADAPTVDTDIPIATVSGVVLGRLAWKPERPGLSTLRPLAIPGAIALLIFG 286 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD-ETRKRAEEENLAKS 250 L + + + H +++ L QA+ + A+ + + + R +A+ + +KS Sbjct: 287 GLLSVVVRKAHRAMHDLEASHHALHVQADSLAAARDRAEAQQVLEAQLRAQADSASRSKS 346 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA +SHELRTPLNAILGFSE+I +T GP + + Y DI+ SG HLL+LIN+ILD Sbjct: 347 EFLALVSHELRTPLNAILGFSEIIAQQTFGPSTADRAQSYARDINESGNHLLSLINDILD 406 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 LS+IEAGRYEL E L D++ C +L+ R EKNI + + + AD + + Q Sbjct: 407 LSKIEAGRYELMEETFVLRDVLDRCATLLRERVAEKNIGLTCH--GTSICLNADRRAVMQ 464 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V++NLLSNAVKFT+ GRV + + I++ D G G++ ++ L FGQ Sbjct: 465 VVINLLSNAVKFTSPRGRVEL-FATVAHDAIEIAVSDTGVGMSHEDLQRSLQPFGQADSL 523 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 + G GLGL IA+ + HGG +RS L EG LP R+ Sbjct: 524 HTRSSGGTGLGLNIAEMLTKLHGGSLGLRSTLGEGTVATIRLPLNRLRASA 574 >gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 905 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 12/297 (4%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVK--ILSCQAEKDDLIAELEVAKSLSDETRKR 241 V I +G + L + +S ++ + + L +E +++ Sbjct: 365 VSTIFFSGSVTILLLMRSIRKQRRIESELRGNQAKLKLAQQTLEKRVEQRTEELSAAKEK 424 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE N AK+ FLA+MSHELRTPLNAILGFS++++ E E + ++G I+RSG+HL Sbjct: 425 AEIANHAKTEFLANMSHELRTPLNAILGFSQLLQSEG---NLTEAHHSHVGIINRSGEHL 481 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 L LIN++L+LS+IEAG+ ++ S++ LI+++ M+QL+A K+I + +P + Sbjct: 482 LTLINDVLELSKIEAGQTVVNVSSLDLIELLETLQSMMQLKANAKSIHLSTTYNPDIPHF 541 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG----QYISIKDNGPGIAEG 415 + D +RQ+++NLL NA+KFT G ++V T ++ D GPGI Sbjct: 542 IETDTIKLRQILINLLGNAIKFTKQGQVNLNVRTLETPNTEGLICLQFTVSDTGPGIDSS 601 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + T F Q +S +G GLGLPI++ GG + S EG + Sbjct: 602 GLEAIFTPFVQTRTGQQSQ-EGTGLGLPISRKFARLLGGDITVDSTPNEGSAFHCTI 657 >gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 1197 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 3/283 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + + L ++NV++ + A+L A+ +R E+ + KS F Sbjct: 433 LLESQTRLQAQQAELEQTNVQLEEYAHRLERQKADLLRAQDDLAANAERLEQSSRYKSEF 492 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L +++++ G L E + Y IH S LL LIN+ILDLS Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +SL ++ + + A K++ + P S+ +D + + Q+ Sbjct: 552 KVEAGQVSVELETVSLDATLQSLEELFRPMAGAKHLNLVFDRLPGAPDSIVSDGQRVTQI 611 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNAVKFT G V ++V I ++D+G GIA ++ + +F Q + Sbjct: 612 LRNLLSNAVKFTER-GEVALSVAPADDDMLRIDVRDSGIGIASDKLEMIFEAFQQADGST 670 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S++ +G LP Sbjct: 671 SRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713 >gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] Length = 1014 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 162/429 (37%), Gaps = 22/429 (5%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T V + + LL Sbjct: 347 VLVHAYSWKTIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA--QRLLES 404 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + ++ +L + ++ + + Sbjct: 405 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 464 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 A++ + + Y + L I+ + ++ Sbjct: 465 DEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLD-------ISLRKESEL 517 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R A++ N AKS FLA+MSHE+RTPLNAI+G E++ + +E E + Sbjct: 518 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 573 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K + + Sbjct: 574 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSS 633 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 I ++ + D +RQV+ NL+ NA+KFT G + + V G I + D Sbjct: 634 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAARDGSAIEIWVNDT 692 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ Q ++ GG I S G V Sbjct: 693 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 752 Query: 469 IAILPNTRV 477 LP Sbjct: 753 TVALPLREA 761 >gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis YPIII] gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 942 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + LL + ++ L + L V P+ ++T + LD + G L Sbjct: 176 IFISTLLLLFCMCVAILFAYRLMRDV---TGPIRNMVNTVDRIRRGQLDSRVEG---HML 229 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLI-----------AELEVAKSLSDETRKRAEEEN 246 + + + + + E I ++E+ +KRA+E + Sbjct: 230 GELNILKNGINSMAMSLAAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAS 289 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA+MSHELRTPLN ++GF+ +T+ T +Y+ I RS +LL +IN Sbjct: 290 RIKSEFLANMSHELRTPLNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIIN 345 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADE 365 ++LD S++EA + L SL + E II+L A EK +E+ I+ + V D Sbjct: 346 DVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQVLGDA 405 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLT 422 ++Q++ NLL NA+KFT G + V V + + + I D G GI+E + + Sbjct: 406 MRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLFQ 465 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +F Q + G GLGL I + ++ GG +S++ G L Sbjct: 466 AFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRFHL 515 >gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9] gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9] Length = 578 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 92/259 (35%), Positives = 146/259 (56%), Gaps = 10/259 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 ++ + L+ + +++ + ++ AE+ N AKS FLA+MSHE+RTPLN I+G S ++ Sbjct: 31 SKLNQLLEDRHFSQANIIKAKEEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTE 90 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + N + EY+ I S Q LL LIN+ILDLS+IE+G LS +L ++V + I + Sbjct: 91 L----NPSQAEYLQTIETSSQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITI 146 Query: 339 LQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +Q +A E+ + + ++DP L + V DE +RQV++NL+SNAVKFT G V +++ +T Sbjct: 147 VQAKASEQGLNLQIQLDPELPTSVMLDEHRLRQVLMNLMSNAVKFTLQ-GSVTLSITYTD 205 Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 SIKD G GI + + V F Q +I G GLGL I + ++ G Sbjct: 206 IGDKKASLLFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLG 265 Query: 454 GQFLIRSKLREGVEVIAIL 472 G ++S+ G + L Sbjct: 266 GSIELKSEKGVGSDFYFSL 284 >gi|149375905|ref|ZP_01893672.1| PAS [Marinobacter algicola DG893] gi|149359785|gb|EDM48242.1| PAS [Marinobacter algicola DG893] Length = 1197 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 123/260 (47%), Gaps = 8/260 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E ELEV + E ++ AE K+ FLA+MSHE+RTP+NAI+G +++ Sbjct: 459 TEIVQREKELEVLNAELKEQKQEAESAVTVKTAFLANMSHEIRTPMNAIIGVLVLLQEAG 518 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + + + LL L+N+ILDLS+IEA EL + +V + + Sbjct: 519 LEDHP----RRLVKKAFSASEALLQLLNDILDLSKIEADHIELDIHPFDIDALVHRSVDL 574 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVG 394 + A+EK +++ IDP+ V D + Q+ NL+ NAVKFT GG R+ Sbjct: 575 FAIVAEEKGLKLRVSIDPTTPNRVAGDLLRISQICTNLVGNAVKFTRKGGIDVRIDYRAE 634 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + I + D G GI + V +F Q + G GLGL I++ + Sbjct: 635 SQASGYLRIEVADTGVGIKPEDQGRVFENFRQADESTSRNFGGTGLGLAISRRLADLMEA 694 Query: 455 QFLIRSKLREGVEVIAILPN 474 + ++S + EG ++P Sbjct: 695 ELTLKSDVGEGSTFQLLVPV 714 >gi|146421491|ref|XP_001486691.1| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC 6260] Length = 665 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + + ++ L + + R+ AE N AKS FLA+MSHE+RTPLN I+G +++ Sbjct: 3 ALKTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQL-- 60 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ + +E + +H LL +I++ILD+S+IEA R + + SL V Sbjct: 61 --SLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 118 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + L ++A EK++++ + D S + D +RQVILNL NA+KFT G Sbjct: 119 LKTLAVKAIEKSLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKK 178 Query: 395 WTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + + D G GI + ++ + +F Q + G GLGL I++ + Sbjct: 179 SSKVVEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 238 Query: 449 MANHGGQFLIRSKLREGVEVIAI 471 + GG+ + S G Sbjct: 239 ILLMGGEIWVTSDYGSGSNFYFT 261 >gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1014 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 146/342 (42%), Gaps = 29/342 (8%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 +++ L V +AL + I L + I+ + Sbjct: 226 GVTHNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMI 285 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + S + E+ E AE N +KS FLA+MSHE+RTP+NAI+G + Sbjct: 286 QGQSLEMERRMRQQLAEQ-NQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTG 344 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + K + I SG+ LL LIN+ILD S+IEAG+ +L L + Sbjct: 345 LLLDTDLTT----QQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCL 400 Query: 333 RECIIMLQLRAQEKNIEIFQKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E + ++ A++K++ + ++ P ++ D +RQ+++NLLSNAVKFT G+V V Sbjct: 401 EEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEA-GQVKV 459 Query: 392 TVGWTSGR------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 TV +++D G GIA + + +F QG+ +I G GLGL I Sbjct: 460 TVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAIC 519 Query: 446 QSIMANHGGQFLIRS------------KLRE----GVEVIAI 471 + A GG S ++ + G Sbjct: 520 VRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFT 561 >gi|17547175|ref|NP_520577.1| composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429477|emb|CAD16163.1| composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 638 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 96/488 (19%), Positives = 188/488 (38%), Gaps = 23/488 (4%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN-- 69 + + P LGL + ++ D L I VL V + ++ Sbjct: 28 LTASLRPLLTKLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDSGNR 87 Query: 70 PIFPMWSLITLAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTL 126 W LI L + A G + + + + W + + GL W Sbjct: 88 LALAGWCLIMLCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAG 147 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + + + E+ ++ ++I ++ A+ + + L ++ Sbjct: 148 LYLVSPSLEFSSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFALAEQAFPEH 205 Query: 187 -ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + +L +F ++ + V+ + + E L A+ DE ++RA Sbjct: 206 GLYVRCVLLFFAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSA 258 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KSRFLA+ SH+LR P++A++ E + +E+ + + Q + L Sbjct: 259 SEEKSRFLAAASHDLRQPVHALVLLVEALRAR----NQSESLAPLVEQLASGAQTIDLLF 314 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +LDLS++E+ + + + L +++ E + A+ K + + Q+I P A+ Sbjct: 315 RSLLDLSKLESRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEP 374 Query: 366 KGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +R+ + NLL NA+++T+ GG V + V + I + D G GIA + +S+ Sbjct: 375 VLLRRALFNLLQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSY 431 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q + QG+GLGL I + + G +RS G L P Sbjct: 432 YQVENPERDPSQGLGLGLAIYKECVRLLRGTHGVRSVPGRGSMFWMALRPVPAEIKAPLA 491 Query: 485 NHESTQYK 492 ++ K Sbjct: 492 AQPRSEQK 499 >gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 591 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEILLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + +++ + + A KNI + + + + + D Sbjct: 424 LALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGKNIHVSVPEKNITPVIIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPLDGKVEVKL-IEHEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 762 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 129/238 (54%), Gaps = 2/238 (0%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + + + K+ FLA++SHELRTPL I+G+++++ +G L+ E +E + + ++ Sbjct: 517 EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPE-VQETLHYMRQASL 575 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +L+ LI++IL+ SR+EAG+ + + + IV+ + +Q + +E + + I P L Sbjct: 576 NLMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLP 635 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + A+ + QV++NLLSNA+KF G + + T G IS++D G GIA + Sbjct: 636 MIQANAGRLEQVLINLLSNAIKFNRPQGLIEIKAE-TRGEWVRISVRDTGIGIAPADQER 694 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F + + GVGLGL I + ++ + GG+ ++S EG LP V Sbjct: 695 IFEEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLPVVPV 752 >gi|329910714|ref|ZP_08275357.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546114|gb|EGF31175.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 1105 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 8/274 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++DL A + ++ R AE N AKS FLA+MSHELRTPL+A++G + Sbjct: 427 AQNELDRYRNDLEALVTSRTIELEQARDAAESANRAKSDFLATMSHELRTPLHAVIGLTR 486 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + +++ +I S + L +I++ILD SRIEAG+ +L SL I+ Sbjct: 487 LL----GAAPISPRQRDHADNILLSAEALQTMIDDILDFSRIEAGKLQLEHLPFSLNAIL 542 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH- 390 R ++ + +K +E IDP + V D ++QV+LNL SNAVKFT G + Sbjct: 543 RTTATVIGIGLVDKPVEACFDIDPDMPDLVLGDSLRLQQVLLNLASNAVKFTDAGSIIVQ 602 Query: 391 VTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G +D+G GI ++ T+ F Q + G GLGL I++ + Sbjct: 603 LLCEPRAGGRIALKFIFRDSGIGIPAAQLDTIFEQFTQADTSTTRRYGGSGLGLAISRRL 662 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G + S+ +G + R P Sbjct: 663 ADLMRGTISVDSQPGQGSTFCFCVELERGAPSGP 696 >gi|150016956|ref|YP_001309210.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903421|gb|ABR34254.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 644 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 10/275 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV--IE 275 KD++ ++ E ++ EE K+ F+A+MSHELRTPLN I +++ + Sbjct: 354 KDEIGVLANSFNNMLAENKRLLEETVQYEKLKTEFIANMSHELRTPLNIIFSTAQLFNVL 413 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + LN E K Y I ++ L+ L+N ++D+++I++G +L +++ +V + Sbjct: 414 INRDENLNTEKMKNYTNSIKQNCYRLVRLVNNLIDITKIDSGYMKLELKNGNIVQVVEDI 473 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + I D + DE+ + +++LNL+SNA KFT G ++ V + + Sbjct: 474 TQSTAEYVEYMSRTIIFDTDNEEKIMAFDEEKLERILLNLISNATKFTEPGDKISVDL-Y 532 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 IS+KD G GI E ++ + F Q + + +G G+GL I ++++ H G Sbjct: 533 DMDDHIVISVKDTGRGIPEEKVSQLFQRFKQVERLLNRSHEGSGIGLSIVKALVEMHEGT 592 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 ++S EG E I LP V PED + ++ Sbjct: 593 IEVKSIYGEGTEFIICLPVKIV----PEDEGKKSK 623 >gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] Length = 621 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 12/242 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 377 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 434 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ---------EKNIEIFQKIDPSL 358 +L LSR++ G ++ ++ D + + + + EK I +KI Sbjct: 435 LLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQD 494 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI + ++ Sbjct: 495 LWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQ-IILSISDQGLGIPKKDLN 553 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL IA+ I+ H G+ S+ +G LP + Sbjct: 554 KIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFEPMS 613 Query: 479 NF 480 Sbjct: 614 EE 615 >gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 643 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 22/282 (7%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + +++ + E A +E +R E + KS FL+S+SHELRTPL + Sbjct: 368 LNRHLEQLVRERTEDLVNKA------RELEEANQRLRELDEMKSAFLSSVSHELRTPLTS 421 Query: 267 ILGFSEVIELETMGPLNN------------ETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ILGF++++ E + +E + I G+ L LIN++LDL++I Sbjct: 422 ILGFAKLLNKEFTRNFLPLVSPEGALARKGKRIRENLAIISHEGERLTRLINDVLDLNKI 481 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E+G + + + +++ + + +E+ +I P L + AD M+QV++N Sbjct: 482 ESGSMGWRDEELDMNEVIEVAASSVSGMFAQTTLELRTEIQPGLPHIVADRDRMQQVLIN 541 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-- 432 LL+NA KFT G V + + + + D G GI + + F Q Sbjct: 542 LLNNASKFTEK-GSVTLRAFPRFSQ-LRVEVVDTGTGIHPEDQSQIFEKFHQTHTDDTMV 599 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +G GLGL I + I+ ++GG+ + S++ G I LP Sbjct: 600 NKPKGTGLGLTICREIIEHYGGRIWVESEVGVGSTFIFTLPA 641 >gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 910 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 16/287 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAK 249 + + + + + +A K L ++ + + AE N AK Sbjct: 477 VDCLLVVIRDVEQRHQLAGELEAYKFHLEELVDQKTADLQRFQQDLITAKDEAERANQAK 536 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S F+A+MSHE+RTPLN +LG ++++E ++ + Y+ I SGQ LL +N+IL Sbjct: 537 STFVANMSHEIRTPLNGVLGLAQLLEKTSLSV----DQRSYVRRILDSGQQLLTTVNDIL 592 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D +++EAGR E+ ES SL +++ I + + + ++ D + Sbjct: 593 DFAKMEAGRLEIEESGFSLHALLQPVIDSVFVEEESSPKFCLDVAPGIPENLIGDRFRIG 652 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 QV++NLL NA+KFT G V + V G SI D G GIA + F Sbjct: 653 QVLINLLGNALKFTKE-GHVSLHVVSMGLGEKGVILKFSIIDTGVGIALDVQKQLFVPFT 711 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q ++ G GLGL I + ++ GG + S G L Sbjct: 712 QADSSVTRNYGGTGLGLTICKKLVVAMGGDIGLESSPGAGSTFWFTL 758 >gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 884 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 10/255 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L+A+ + ++AE+ KS FLA+MSHE+RTP+N I G ++ + Sbjct: 356 LLAQSNQLNQDLLKATEKAEQATEFKSIFLANMSHEIRTPINGISGLIDL----CLATEL 411 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++++ S L++L+N+ILD S+IEAG+ + SL I+ I + R+ Sbjct: 412 THRQRDFLDKAAYSTNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRS 471 Query: 344 QEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-- 399 EKN+ + +I P+L + D + Q++ NL +NAVKFT+IG + V Sbjct: 472 YEKNLHLNCEIAPNLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDK 531 Query: 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +S+ D G G+ E +I + +F Q +I G GLGL I + ++ GG+ Sbjct: 532 QIKLILSVSDTGVGLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEIS 591 Query: 458 IRSKLREGVEVIAIL 472 + S G L Sbjct: 592 VNSTPDVGSSFCVEL 606 >gi|295689157|ref|YP_003592850.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295431060|gb|ADG10232.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 645 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 160/402 (39%), Gaps = 36/402 (8%) Query: 100 IGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI---YKSATLLIALSISALSN 156 W W+L + GL + P + + + LL + A+++ Sbjct: 96 NDFWDAWLQWMLEDGL--GLLVATPAALLPFKQERLFRAPGGRLERSLLLALTVVVAVAS 153 Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA-------------------- 196 F L + L+ ++ L+ V LA L Sbjct: 154 FALDQFIALTLVMPLLVLTAFRAGPGWVYVSVLATSLVAMSLTANGHGPIAFIAPTDPYR 213 Query: 197 -LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + +F + V + ++ LE A + + +AE + +KS FLA+ Sbjct: 214 QEFMVQLLIASIFATAVPATAALGARNRSAQRLERAFAAVRNAKNKAEAASRSKSEFLAN 273 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+N I+G + + P ++ + + S L L+N++LD++R+E Sbjct: 274 MSHEIRTPMNGIIGVVGALARTDLAP----KQRDMVHLVETSADSLQVLLNDVLDMARVE 329 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILN 374 AG + L R + + + +A+EK + +I P ++ D +RQV+ N Sbjct: 330 AGELAIHPEPFDLRTTCRAIVELFRAKAEEKGLSFELEIAPEVAERHIGDAARLRQVLGN 389 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 L+SNA+KFT GRV V + T + +++ D G G + F Q + Sbjct: 390 LVSNAIKFTER-GRVEVRIDATPEVDGVQALALAVVDTGIGFDAETGQRLFARFAQADGS 448 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I G GLGL I++++ G+ + S EG L Sbjct: 449 ITRRFGGTGLGLSISRALTRLMNGEIEVASTPGEGSCFTVRL 490 >gi|168047043|ref|XP_001775981.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162672639|gb|EDQ59173.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 436 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 12/283 (4%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + + D EL A ++KRAE + AKS FLA+MSHE+RTP++ + Sbjct: 3 VELENKVDRRTLELRKANEELQTSQKRAEMASHAKSDFLANMSHEIRTPIH----GILGL 58 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + KE + + LL++IN +LDL++IEAGR E+ + ++ +V Sbjct: 59 IALLLESELTVDQKESLASVKECADLLLHIINSVLDLAKIEAGRLEVERVSFNIRKMVSS 118 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVT 392 MLQ RAQE+ +++F ++D ++ + D ++Q +LNL+ NA+KFT G VH++ Sbjct: 119 TFRMLQARAQERGLKLFWEVDRNVPHSLVGDVGKLQQCLLNLVGNALKFTHEGSVSVHLS 178 Query: 393 VGWT------SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + + + D G GI ++ + F Q + G GLGL I Sbjct: 179 ADRSTLVHAPENVLIHFEVCDTGIGINPDKLKDMFKPFTQADASTSRLYGGTGLGLCIVH 238 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + GG + S+L +G LP + E + E++ Sbjct: 239 RFVELLGGTIWVESELGKGSTFQFCLPLSLNNPIPKEGSAEAS 281 >gi|14133665|gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum] Length = 1213 Score = 265 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 153/392 (39%), Gaps = 19/392 (4%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 + LC+ L + + S I+ + + + LS + + Sbjct: 686 LCFTLCFALTINSYYTGGHQSTIRLLMSPVPPISALVLGRKASIQWSLMVLSIYLLFF-- 743 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 A + H + ++ + F + + + L Q D+ E ++ + Sbjct: 744 --VANLYGHEYVQGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQ 801 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + A E A+ FLA+MSHE+RTPLN ++G + ++ K + Sbjct: 802 LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKAV 858 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 G LL L+N+ILDLS++EA + L + ++ ++ +L +A EKNI + ++ Sbjct: 859 KSCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEV 918 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQY---------I 403 + S+ D + Q+++NL NA+KFT G ++ + + Sbjct: 919 SDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISF 978 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +KD G G+ + +F Q + G GLGL + ++ G+ + + Sbjct: 979 RVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPD 1038 Query: 464 E-GVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G ILP + + + ++K + Sbjct: 1039 CDGSTFWFILPLEEGTDQSMQQMNNGARHKAF 1070 >gi|307265850|ref|ZP_07547400.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919125|gb|EFN49349.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 457 Score = 265 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 79/311 (25%), Positives = 144/311 (46%), Gaps = 10/311 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L F + A + +S L + K L E D+L Sbjct: 157 LLFILMFFADAAGIFVSFIAGYFVTKRALRPVDYMIKEVREIDAHGLNKRLKIYGEDDEL 216 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + D R E+ ++ F++ SHELRTP++ I G+ +++ + G + Sbjct: 217 TRLAKTFNGMLD----RLEDSFKRQNMFVSDASHELRTPISVIKGYIDML--DRWGKEDK 270 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E I I R + +LI +L L++ + +L++ +L D+++E +++ + Sbjct: 271 AVLQEAIEAIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNE 330 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 KNI + + D ++ AD+K ++++I L NA K+T+ G + + VG + + YI Sbjct: 331 SKNIVVKGQND---INITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSK-AYIK 386 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 IKD+G GI + +IP + F + A G GLGL IA+ I+ H G ++S++ + Sbjct: 387 IKDDGIGIPQEDIPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGK 446 Query: 465 GVEVIAILPNT 475 G E LP Sbjct: 447 GSEFTITLPLR 457 >gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 536 Score = 265 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 144/370 (38%), Gaps = 17/370 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA-LSTQAIM 180 + L + + L I ++ +S S S + + + Sbjct: 21 AGVDLATFFDVSLDLLVIRDLEGRIVRVSASWASILGYRPEELVGLPILTLVHPDDMPGT 80 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSL 234 V ++ L + + Q D + A A+ Sbjct: 81 LGSVTEVETRRPGDPVLGHVNRYRHKDGRYVTLEWRAQKFGDRIYAVARDVTAKVAAERA 140 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E + AE N AKS FLA+MSHE+RTPLN ++G + + + P E + + Sbjct: 141 LVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALARTPLSP----QQAEMVELV 196 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S L L+ +ILD+SRIE+GR L L D + I L+ A+EK + + Sbjct: 197 RSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAEEKGLTFRLER 256 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409 S V+ D +RQ++ NLLSNAVKFTA G+V V V + ++D G Sbjct: 257 AESACGVFNGDVVRVRQILGNLLSNAVKFTAQ-GQVSVHVDLLDRGDGAVLLTLEVRDTG 315 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G + F Q +I G GLGL I ++ GG+ S EG Sbjct: 316 IGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAESAPGEGSRFQ 375 Query: 470 AILPNTRVLN 479 LP TR+ + Sbjct: 376 VELPLTRIAS 385 >gi|182413970|ref|YP_001819036.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841184|gb|ACB75436.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 635 Score = 265 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 106/432 (24%), Positives = 177/432 (40%), Gaps = 17/432 (3%) Query: 64 TWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTL 123 + P ++ L V A L + VM + + +L ++ L Sbjct: 53 LVWIDPPALGPRIVLNLIVAVACLLCLRLVMRGRLSRAANQLALTLVLAVHGSVTLVAAT 112 Query: 124 LTLVEPGT---WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF-------FPVVVA 173 +T +P + + ++ +L A A F + A + F PV Sbjct: 113 MTAQQPLSVAIQLFAFNIVFLLFAILFAARWVAGVVFAIIVAGHVGFHTLVLQKVPVAPG 172 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L A + + L + + I ++ + Q ++L + Sbjct: 173 LQFAAGTLLRDGLLVLGLLFCLGIILGRLIETAHRRTEEALRQVQNLNENLERLVADRTR 232 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++AE + AKS FLA+MSHE+RTPLN I+ ++++ +E+ Sbjct: 233 ELQLASQQAEAASRAKSEFLANMSHEIRTPLNGIIASADLMIQR---ADLPAEAREHARL 289 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +SG LLNL+ +ILD S+IEAG+ L + L V + + +L RA +++ Sbjct: 290 ITQSGDLLLNLLGDILDFSKIEAGQITLEDHVFELESTVTDTVALLASRAATAAVQLQVA 349 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNG 409 + P+++ AD +RQV+LNLL NAVKFT GGRV ++V I+D G Sbjct: 350 VAPAVARNFEADSYRLRQVLLNLLGNAVKFTPAGGRVQISVTAAGEGDPRPVRFEIRDTG 409 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+ E + + F Q + G GLGL I+ ++ GG+ + S +G Sbjct: 410 IGMDETTLRRIFERFTQADSSTTRRYGGTGLGLAISFRLVEMMGGRLAVESAPGQGSIFY 469 Query: 470 AILPNTRVLNFI 481 LP V Sbjct: 470 FTLPLRPVDAPA 481 >gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7] Length = 1172 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 3/296 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L T + L + + + D EL +A++ + + KS F Sbjct: 438 LETQQAELEQTNEQLADQSQALAEQRDALDRNNEELNIAQAELQARADELQRASKYKSEF 497 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L ++++ L E K + I+ +G LLNLIN+ILD+S Sbjct: 498 LANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK-FAESIYSAGNDLLNLINDILDIS 556 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ E+ S+ +V + Q A EK + I ++ D + + Q+ Sbjct: 557 KVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQI 616 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNA+KFT G V + V G G ++D+G GIAE + +F Q Sbjct: 617 LKNLLSNAIKFTEA-GSVSMVVSRHPGAGIAFIVRDSGIGIAEEHQQGIFEAFRQADGTT 675 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G GLGL I++ + A GG + S +G +LP V E + + Sbjct: 676 NRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEQYVEQDGREPDSD 731 >gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 534 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + I ++ Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + P+ ++ D+K + QVI N ++NA+KFT G++ + Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTCEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI ++ V F + S +G GLGL I +SI+ + GG + S++ Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518 Query: 464 EGVEVIAILPNTRV 477 G P V Sbjct: 519 TGSRFWFTHPYKSV 532 >gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 423 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L E + + +E + K+ F+A+MSHE+RTPLNAI+GF+ ++ T N Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+++ LL LIN+ILDLS+IE+GR + S + L DI +E ++ L+ Sbjct: 217 ASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + +W D + QV+LNLLSNA+KFT+ G + + + Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E ++ +V F + QG GLGLPI + I+ GG+ +RS+L Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G LP + E + S +C Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 131/282 (46%), Gaps = 21/282 (7%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + R AE N AKS FLA+MSHE+RTP+N I+G +++ + Sbjct: 653 RDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEIRTPMNGIIGMTDLALMGGCDSK 712 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y+G I S LL LIN+ILDLS++E+GR EL + A L + + L+L Sbjct: 713 AS----SYLGFIKESAHSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLRLS 768 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 AQ K +E+ + P + + D+ +RQV NL+ NA+KFT+ G + + V + Sbjct: 769 AQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNALKFTSWGSITIAIGVAEAADSR 828 Query: 401 ---------QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + IS + D G GI ++ V SF ++ G GLGL I + Sbjct: 829 KTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESF--ATLGHDKEYGGTGLGLAITKK 886 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 ++ GG S+ +G + R P + ++ Sbjct: 887 LVEIMGGTIWAESQPGQGSVFGFTVRLARASEAEPACSEQAA 928 >gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 679 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 84/268 (31%), Positives = 148/268 (55%), Gaps = 4/268 (1%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 L + I+E + + ++ E+ ++AKS+FL++MSHELRTPLNA+LGFS+ Sbjct: 411 SELKSVSVSMRDISERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQ 470 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++++ PL+N + E + +I ++G HLL LINEILDL++IE+G+ + + ++ I+ Sbjct: 471 ILQMDKSAPLDN-SQSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPII 529 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E + ++ A+E +IEI + V AD +RQV+LNL SNAVK+ G+V Sbjct: 530 EETVAFIKPLAKENDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSF 589 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + +I D+G GI ++P + F + + +G G+GL A+ ++ Sbjct: 590 YCEKI-DKFIRFNILDSGLGIPSAQLPAIFDPFYRL-PITANNVEGTGIGLAAAKQLVEL 647 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG ++S+ +G +P ++ Sbjct: 648 MGGNINVKSQEGQGSHFWFDIPCAEAVD 675 >gi|21231592|ref|NP_637509.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768286|ref|YP_243048.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113281|gb|AAM41433.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573618|gb|AAY49028.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1146 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 10/329 (3%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH-LFKSNVKILSCQAEKD 222 + +A + + + A + + +S + E+ Sbjct: 676 RALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLREQAMARSASHLAGIVIERT 735 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + A+L+ + R +AE + K FLA++SHELRTPLNAILG+S +++ + P Sbjct: 736 RVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP- 794 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I RS + +I+++LD+S I +G+ L + + R + ++Q Sbjct: 795 --AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPT 852 Query: 343 AQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ + I + + D ++QV+ NL+SNA+KFTA G V V++ + Sbjct: 853 AQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPEGDVRVSLE-VEEQRL 911 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GIA +P V F Q G+GLGL I++ ++ HGG S Sbjct: 912 RLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGASSD 971 Query: 462 -LREGVEVIAILPNTRVLN---FIPEDNH 486 G +LP ++ PE H Sbjct: 972 GEGHGATFTVVLPFQHGVSDQRPAPEPAH 1000 >gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] Length = 2013 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + L V ++ + L + L + +L + ++ Sbjct: 1224 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 1283 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206 S F FL+ ++A S I + L Sbjct: 1284 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 1343 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 L +SN ++ A +++EV + R+ EE KS FLA+MSHE Sbjct: 1344 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 1403 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L+++ E+ I+ +G LL LIN+ILDLS++EAG+ Sbjct: 1404 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 1462 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 E+S + I+L+ +V + EKN++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1463 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1522 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G + ++ G+ S+ D G GIAEG++ Sbjct: 1523 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 1582 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 1583 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 1638 >gi|332528410|ref|ZP_08404402.1| sensor histidine kinase/response regulator [Hylemonella gracilis ATCC 19624] gi|332042089|gb|EGI78423.1| sensor histidine kinase/response regulator [Hylemonella gracilis ATCC 19624] Length = 1127 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 14/344 (4%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 A+ + + V + A +A+ + SL +LA +++ + Sbjct: 570 FAVFLGLSALMAFLLGVVYVQESLQGAAHAEALRLPFIKAFSLMAVLAAVCAWWVVLATE 629 Query: 207 LFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + Q + I + ++ AE + AK+R++A M+HELRTPLN Sbjct: 630 SRRMAHDESERQTQLLQKEIDAHQRTDEALQSAKEAAESASQAKTRYVAGMTHELRTPLN 689 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +ILG+++++ G +E + I +SGQH+ LI+ +LDL+RIEAGR L + Sbjct: 690 SILGYAQILLR---GNALKGGAREAVTTIQQSGQHMHALIDGLLDLARIEAGRLRLDPAP 746 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 + + + E M+Q +A+ K + + + V AD K +RQ+++NLL+NAV+FT Sbjct: 747 LPFQEFLSELARMVQPQAEGKGLAFRLETLGRVPAWVRADAKRLRQILINLLANAVRFTD 806 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GR+ V I+D G GIA + + F +GS +S+E G GLGL I Sbjct: 807 R-GRIVFRVDCRHE-VLRFDIEDTGIGIAPQDQERIFMPFERGSAGRRSSEAGTGLGLAI 864 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL-------PNTRVLNFI 481 + GG+ +++S++ G L P V N + Sbjct: 865 THLLTELMGGELILQSEVGHGSTFSVRLYLREIEPPARPVANAL 908 >gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 797 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 9/262 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + + E +++A + + AK FL+ MSHE+RTPLNA++G + ++ Sbjct: 407 TDKKRVEREMLEAKEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEN----DPRA 462 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + E + + SG++LLN+IN+ILD +++E G +L S+ + + I L + A + Sbjct: 463 SQIEDLNILKFSGENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATK 522 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401 K + D + + D+ + Q+++NLL NA+KFT G++ ++V Sbjct: 523 KGNILELLYDDQIPHLSGDKTRLYQILMNLLGNAIKFTDQ-GKIILSVKLLEQDAVNASL 581 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y I D G GI E ++ + +F Q I G GLGL I + ++ + + ++S+ Sbjct: 582 YFEISDTGIGIPEDKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSR 641 Query: 462 LREGVEVIAILPNTRVLNFIPE 483 G L + + E Sbjct: 642 EGAGTTFSFTLRFAKASAAVSE 663 >gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii DSM 18315] gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii DSM 18315] Length = 502 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++ AEE + KS F+A+MSHE+RTPLNAI+GFS ++ E +E Sbjct: 263 KQHEEDVRAKRLAEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAQ----ADTEEEKQE 318 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I S + LL LI +ILD+S+IE+G+ E ++ L +I + RA+ + Sbjct: 319 YLRIIQSSNEFLLQLIGDILDISKIESGKLEFIYTSFRLNEIFQPQERAFSFRAE-PGVR 377 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 I + D + + +++ + QV+ N LSNAVKFT+ G + T Y+ + D G Sbjct: 378 IIFETDGNDYYIESEKTRLTQVLTNFLSNAVKFTSS-GSIRFGYRLTETG-IYVYVTDTG 435 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA+ + TV F + + +QG GLGL I ++I++ G+ + S+ +G Sbjct: 436 SGIAKKHLSTVFDRFVKLDM----FKQGTGLGLSICKTIISILKGEIGVESEEGKGSTFW 491 Query: 470 AILPNT 475 +P + Sbjct: 492 FTIPCS 497 >gi|160894573|ref|ZP_02075349.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50] gi|156863884|gb|EDO57315.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50] Length = 1121 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 101/431 (23%), Positives = 191/431 (44%), Gaps = 42/431 (9%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 LL+ T F + + +IT + + S + + + Sbjct: 348 LLICFFVTAFLRYESGAGFVIITFCTVPVCIYVTC----SKKTPVKAHGF--------CM 395 Query: 117 IGLCWTLLTLVEPGTWTPEYLT-IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G + ++ + LT ++ +A ++I+L N + + + + +++ Sbjct: 396 TGCLFMIIAMYGLLPDGHNRLTDMFLTAMVIISLYQMVELNIFMLVSTEIYYLYALLSDH 455 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 Q +D + M+ L + +IA + + Sbjct: 456 MQDASGGRDIDDCITDMIIILLGSLMLLV-------------------VIAWNKRLQIRL 496 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + AEE ++S FLA++SHE+RTPLNAILG +E++ E+ P KEY I Sbjct: 497 KQNAQEAEEAANSESAFLANISHEIRTPLNAILGMNELVLRESRQPH----IKEYAMYIK 552 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+ LL +I++ILDLS+IE+G+ ++ SL ++ + +Q R EKN++ + Sbjct: 553 NSGKTLLTIISDILDLSKIESGKVDIIIERYSLSSLIEDVERSIQKRVMEKNLQFNISVS 612 Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPG 411 P + DE ++Q+I+NLL+NAVK+T G + + + S +I + D G G Sbjct: 613 PYMHEYLQGDEVRIKQIIMNLLTNAVKYTEK-GCISLRITGESQDTIQKLFIEVADTGIG 671 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + ++ + T F + + + +G GLGLPI +S++ GG ++S +G Sbjct: 672 MRDEDLGKLFTKFERFDLKRNRSVEGTGLGLPIVKSLLDAMGGTIQVQSVYGKGSTFTVA 731 Query: 472 LPNTRVLNFIP 482 L ++ + P Sbjct: 732 L-TQKIADEEP 741 >gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 989 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 8/319 (2%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKI 214 + + + F V + + + S L + ++ L Sbjct: 446 HRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFDGERVWVTLSVALQHDASGQ 505 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + I+E + + + AE + AK +FLA++SHELRTPLN ILG+++++ Sbjct: 506 TAHVIVIIQDISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGYAQIL 565 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + + +G I +SGQHLL LIN+ILD +R+ AG+ EL + L + Sbjct: 566 QRDV---RLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGFLET 622 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 ++ +RAQ+K + + P L V DE+ +RQV+LNLL+NAV+FT G V ++V Sbjct: 623 IAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDR-GEVTLSV 681 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G++ + + F Q G GLGL I+Q ++ G Sbjct: 682 SRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGD-HTRRSGGAGLGLAISQQLVRMMG 740 Query: 454 GQFLIRSKLREGVEVIAIL 472 G+ + S EG L Sbjct: 741 GEIEVTSSAGEGSVFGFEL 759 >gi|283851290|ref|ZP_06368572.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283573240|gb|EFC21218.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 656 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 162/377 (42%), Gaps = 28/377 (7%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 V +L + A LL+ I + + ++ + Sbjct: 158 VASSKQNAVFLFVLFIAVLLVTNGIIFYVSNSSLLEKVSTLQEGTKRIARGDLGYRVPDL 217 Query: 187 I------------SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 +AG L + + L ++N L + + L E E+A Sbjct: 218 GNNEFSQMARCFNDMAGRLEASRFELLRKSDELKRAN-AALEDRVAQRTLALEQEIATRK 276 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E +RA + N AKS FLA+MSHE+RTPLN I+G + ++++ Y+ Sbjct: 277 VTE--ERARQANRAKSEFLANMSHEIRTPLNGIMGMVHLARMQSLDRTT----LSYLELA 330 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S QHLL ++N++LD++++EAG+ L+ A L + L++ AQ K + + + Sbjct: 331 DASAQHLLGIVNDVLDIAKMEAGKIRLARQAFDLRREFEATLTPLRIAAQGKGVVLDHAV 390 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKD 407 P ++ V D +RQV+ NL+ NAVKFT GR+ V V G+ ++I+D Sbjct: 391 APDVADHVVGDVGRLRQVLTNLVGNAVKFTGQ-GRIDVRVDREGAADEAGGQRLRVTIRD 449 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ + + SF Q + + G GLGL IA+ ++ GG S+ EG Sbjct: 450 TGIGVPADRLERIFESFEQAHTSAHALYGGTGLGLSIAKRLVELMGGDIRAESREGEGST 509 Query: 468 VIAILPNTRVLNFIPED 484 + V+ P++ Sbjct: 510 FAFTI-RLEVVAPAPQE 525 >gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] Length = 1386 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 7/313 (2%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + L+ + L+ A + +S + + +L+ + + E Sbjct: 911 AALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRE 970 Query: 228 LEVAK--SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 LE A+ + + + ++ AE N AK +FLA++SHELRTPL+ +L ++++ G +++ Sbjct: 971 LERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDA 1027 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K I RS + + LI+++LD+SRI G+ + + L +V+ + + +A+ Sbjct: 1028 KIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAER 1087 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 K+I +D SL V D ++Q++ NLL+NA+KF+A G RV V + + + Sbjct: 1088 KSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERME-GSARLQV 1146 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LRE 464 D G GI + + F Q + G+GLGL I + ++ HGG S + Sbjct: 1147 SDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQ 1206 Query: 465 GVEVIAILPNTRV 477 G ILP V Sbjct: 1207 GAIFTVILPLMPV 1219 >gi|323692410|ref|ZP_08106646.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum WAL-14673] gi|323503550|gb|EGB19376.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum WAL-14673] Length = 875 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+R + + AK FL+ MSHE+RTP+NAI+G + + E KE + I +S Sbjct: 487 RERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIKIDQSS 543 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q+LL+LIN+ILD+S+IE+G+ +L+ + S++ + E +++ + ++KNI + I Sbjct: 544 QYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVEN 603 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIKDN 408 V+AD ++QVI+NL SNAVKFT GG++ +V + +++DN Sbjct: 604 PWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDN 663 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI+ + +F Q +A G GLGL I+ ++ GG+ + S+ EG Sbjct: 664 GIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRF 723 Query: 469 IAILPNTRVLNF 480 L R Sbjct: 724 SFTLRFIRAEEP 735 >gi|291527567|emb|CBK93153.1| Signal transduction histidine kinase [Eubacterium rectale M104/1] Length = 440 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 15/316 (4%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 V + ++ + + + L + +K + A + Sbjct: 131 GTVLRVSIAARSIWNMFASSIPAMLIVTVIIVGICVVLAKSLTRKLMKPIETLAGNLEQA 190 Query: 226 AELEVAKSLSDET------RKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + ++ + R + E ++ F A++SHEL+TPL AI G++E+IE Sbjct: 191 SVIQKKTEYKELVPFMNAIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIEN 250 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 G + E + +I R+ Q LL+LIN+I+ LS +++ + + L +V++C+ Sbjct: 251 ---GMVEKEQQIHFATEIRRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCM 307 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 LQ+ A+++ + + + V + + + +++ NL NA+++ GG V+VTV Sbjct: 308 ETLQVNAEQRKVALNFDGTDCM--VRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKL 365 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 G ++++DNG GI + + V F + + G GLGL I + I+ H Sbjct: 366 -GGKTVLTVEDNGIGIPKDQQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVQLHDAGL 424 Query: 457 LIRSKLREGVEVIAIL 472 + S++ G + Sbjct: 425 TLDSEVGRGTTIKVEF 440 >gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1231 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 25/310 (8%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR-------AEEENLAKSRFLASM 256 L +S ++ Q E L ELE ++ R+ E + KS FLA+M Sbjct: 502 AQTLRRSEEELRLQQEELQSLNEELEEKNGALEKARRDVERKAADLETASRYKSEFLANM 561 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L + + G L+ + E G I+R+G LL LIN+ILDLS++EA Sbjct: 562 SHELRTPLNSLLLLARNLRDNGSGRLDPDEV-EAAGIIYRNGNDLLMLINDILDLSKVEA 620 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G+ L ++ L D+ + A+ K I + +I L + D + + Q++ NL Sbjct: 621 GKLSLHLESVPLADVAGSIMADFGHVAEGKGISLHHEIGEGLPQAIRTDRRRLEQILRNL 680 Query: 376 LSNAVKFTAIGGRV-----------HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 +SNA+KFT GG V + +G S+ D G GIA + + +F Sbjct: 681 VSNAMKFTETGGVVLRLHLADAADGRPSSRGAAGDMVAFSVIDTGIGIAADKHQAIFEAF 740 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN----- 479 Q G GLGL I + + GG+ + S+ G ++P Sbjct: 741 QQVDGTSSRRYGGTGLGLSITRELARLLGGRVTLASQPGRGSTFTFLVPIEAAAAGNAAW 800 Query: 480 FIPEDNHEST 489 +P E+ Sbjct: 801 TLPAPQQETP 810 >gi|94264446|ref|ZP_01288235.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455136|gb|EAT05358.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 702 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 10/237 (4%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +AE N AKS FLA+MSHE+RTP+N +LG + ++ + N + G I SG+ Sbjct: 204 DQAETANAAKSEFLANMSHEIRTPMNGVLGMTTLLMDTGL----NREQRHLAGIIQASGE 259 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL +IN+ILD S+IEAG+ +L L ++V + + A+ KN+ + ++DP+ Sbjct: 260 DLLRVINDILDFSKIEAGQLDLEVIDFDLQELVDNFAAAMAIPARAKNLALICELDPATP 319 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIAE 414 + D +RQ++ NL+ NA+KFT G V + T ++++ ++D G GI Sbjct: 320 RFLRGDPGRIRQILTNLVGNAIKFTEQ-GEVALHFDATEQNSEHLTLRCRVRDTGIGIPA 378 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + SF Q + G GLGL IA+ + G + S +G E Sbjct: 379 DKRDRLFKSFSQADSSTTRQYGGTGLGLAIAKQLAEKMEGAISVTSVAGQGSEFTVT 435 >gi|332306269|ref|YP_004434120.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173598|gb|AEE22852.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 573 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 88/430 (20%), Positives = 151/430 (35%), Gaps = 36/430 (8%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 + L +A+ +TL N ++ K + + Sbjct: 21 VAYFFAVLYCALTLAHYFVLQEPFKWVL--CAMTLLTALLNGAVALSTAKIPAKRQSLII 78 Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 + L+ + L L I LS A Sbjct: 79 LILLLIASAN------SFLHLWFSEASEHSTNIFVTIIASGIVLSNRAHWTAS------- 125 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + + + + ++ T + +++ ++ +L Sbjct: 126 --------ILFNWVGWITISVWLELALIQHFFFAMAMSTLLSWFAHLARKKLVTKQIELE 177 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E ++A E + KS FLA+MSHE+RTP+N ++G E++ + N Sbjct: 178 IERDLAIQHELEAK----AATETKSAFLANMSHEIRTPMNGVIGMIELVSQTEL----NT 229 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K Y+ RS LL +IN+ILD S+IE G + L E + A++ Sbjct: 230 DQKNYLATAKRSADSLLIIINDILDFSKIEVGELTIEFVEFDLEQFFEELLHDQHFHARK 289 Query: 346 KNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---Q 401 K + + V D + Q++ NLLSNA+KFT GG + V + Sbjct: 290 KGLTLALSKGDFHHRHVVGDPYRITQIMNNLLSNAIKFTESGG-ITVHYDLVTLGDNLQL 348 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + IKD G G++E +P + SF Q + G GLGL I + + G ++S+ Sbjct: 349 KVEIKDTGIGVSETALPFLFDSFSQADTSTTRKFGGTGLGLSITKQLCELMNGDISVKSQ 408 Query: 462 LREGVEVIAI 471 L +G Sbjct: 409 LNQGSTFSFS 418 >gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] Length = 1468 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 130/266 (48%), Gaps = 15/266 (5%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + A E K++F+ ++SHELRTP + I+G S+++ + P T ++ + I Sbjct: 849 RQAELAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSNLTP----TQRDNVDSIK 904 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RS L++LIN+ILD S++E G+ L + L+ ++ E + K I++ + Sbjct: 905 RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDLIFTMG 964 Query: 356 ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409 P ++ D +++V+LNL+ NA KFT G + ++ + SG ++KD+G Sbjct: 965 RDYPVPPVIFGDRNSLKKVLLNLVGNATKFTESGFVLLEISTDYVSGDQISLRFTVKDSG 1024 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS--KLREGVE 467 GI E +I + FGQ + G GLGL + ++A GG + S + +G Sbjct: 1025 IGIPEDKIEQIFIPFGQVDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQDGKGTT 1084 Query: 468 VIAIL--PNTRVLNFIPEDNHESTQY 491 + P + +++P + Q+ Sbjct: 1085 FWFSIKVPISS-PSYLPNSVPAANQF 1109 >gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 540 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 133/275 (48%), Gaps = 10/275 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E +V + ++ AE N AKS FLASMSHE+RTP+N ILG E++ + Sbjct: 123 EDVTESKVLREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTDL--- 179 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +EY+ + S Q L++ +N++L+ SR++A R EL L+ V + LR Sbjct: 180 -DPQQEEYLRIVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALR 238 Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGR 399 A+EK +E +DP V D +RQ++ NLL NA+KFT G + +++ Sbjct: 239 AREKGLETVLDLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEK-GWIALSIRRFPPEDG 297 Query: 400 GQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 G ++ + D G GI + + FGQ + G GLGL I + +++ GG Sbjct: 298 GLWLEFGVVDTGIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLS 357 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + S+ +G LP + E + + Sbjct: 358 LESEEGKGSSFHVRLPFLPAGPAPSREAPEEGEGR 392 >gi|268317404|ref|YP_003291123.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334938|gb|ACY48735.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1074 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 8/324 (2%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 + F + L I+ + L +T+ + + Sbjct: 742 GVYRFQVRARNAWGMTTPTTTLVV-RILPPWYRTWWAYTLYLITLVTIVVLTWRHYVAQQ 800 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + + L +E +S + E N AK L++ +HELRTPL+AILGF+ Sbjct: 801 RAIQ-MYIATVLGDRIEAMRSRIKLLTRLLREANAAKETILSTTTHELRTPLSAILGFAS 859 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 VI+ ET +N +KE++ I SG LL IN+ILDL+R+ +G + + + + V Sbjct: 860 VIKEET----DNPLHKEFLEHIEESGHRLLATINDILDLARLRSGSMVVRRVPVEVTETV 915 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 ++ +L+ A++K ++ ++ P V+ D + +V+ NL+ NA+KFT G V ++ Sbjct: 916 QKVYKLLEPLARKKGLDFRMELPPEPLRVFGDPSAVERVLTNLVGNAIKFTPE-GEVVIS 974 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 V + I+++D G GI+E +P + F Q S +G GLGL IA ++ Sbjct: 975 VTA-DEKHVRIAVRDTGVGISEEFLPHIFDEFRQESSGADREFEGSGLGLAIASRLVKLM 1033 Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476 G+ + ++ +G +LP Sbjct: 1034 EGEIEVVTEKGKGSTFTVVLPRAP 1057 >gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402] gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 585 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 6/250 (2%) Query: 227 ELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E++ R EE + K F+A++SHELRTP+ + G++E I + ++ Sbjct: 332 EIKQGNGAVAIIRDMTEEKKIDQMKQMFIANVSHELRTPIQMLQGYTEAILDGIVSEKSD 391 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E++ I + L L+NE+L+++RI+AG L+ A + +++ I+ + A+ Sbjct: 392 --VDEFLNIILDESKRLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAE 449 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + E+ S W D M QVI N++ NA+++T G + + I Sbjct: 450 KHETELQTHYS-HHSKAWLDYDKMIQVITNIIDNALRYTVAGDVISIHTD-EDDENLIIR 507 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GIA I + F + A + G GLGL I +SI+ H G + S + + Sbjct: 508 ISDTGVGIAPEHIDNIFERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGK 567 Query: 465 GVEVIAILPN 474 G + +P Sbjct: 568 GTTFVISIPK 577 >gi|187777044|ref|ZP_02993517.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC 15579] gi|187773972|gb|EDU37774.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC 15579] Length = 464 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 150/328 (45%), Gaps = 12/328 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + TY+ Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G+S + ++ E K+ + I + L ++ E+LD S+ +G+ L++ I Sbjct: 262 IKGWSITLNSN---EVDKEVLKDGLKIIEDESERLSGMVEELLDFSKFVSGKMNLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ +I+ L+ A I L +++ D+ ++QV++NLL NA KFT G Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDKNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELNIKYEEE-YITIFVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474 I+ H G I S+ +G + LP Sbjct: 434 EIVKLHNGVLHIESEENKGTTISVKLPV 461 >gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 781 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM----TIADNA 453 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626 Query: 465 GVEVIAILP 473 G +P Sbjct: 627 GSTFRFTIP 635 >gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 488 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 19/316 (6%) Query: 163 VFLSFFPVVVALSTQAIMSMH----VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 +F + +++A +S ++ I A F I+Y I+ Sbjct: 175 IFSTIIGIILATILAFWLSTSITKPLVQIKTAAQKIANRDFSHRISYQGKDELGDIVQTI 234 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + + +A + ++ R+ FLA++SHELRTPL I G++E + Sbjct: 235 NQMAAQLEKYIIAYNKREQNRR----------EFLANVSHELRTPLTIIQGYTEALLDGI 284 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + +E++ +I + + L + NE+LDL+ IE GR +L I L + ++C Sbjct: 285 VT--DEKIREEHLKNILQEAERLKAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNA 342 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + + EK IE+ +++ V D + +V+ NLLSNA+KFT GG+V V Sbjct: 343 FKTQFFEKGIELELEVNVQDGKVVGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEGEK 402 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Q I +KD+GPGI E ++ + F + A S G GLGL I +SI+ HGGQ Sbjct: 403 DYQ-IHVKDSGPGIPEQDLEKIFERFYKVDKARSSK--GFGLGLAITKSIVEAHGGQIFA 459 Query: 459 RSKLREGVEVIAILPN 474 R+ G + +LP Sbjct: 460 RNNPEGGAKFTVVLPK 475 >gi|289628096|ref|ZP_06461050.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646717|ref|ZP_06478060.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. aesculi str. 2250] gi|330867455|gb|EGH02164.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 645 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M +EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQREYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C101] gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C101] Length = 554 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I +I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M876] gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus C160] gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus Btn1260] gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WBG10049] gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M899] gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C427] gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus A017934/97] gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus 58-424] gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M809] gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M1015] gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus MN8] gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M876] gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C427] gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M899] gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WBG10049] gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus Btn1260] gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus C160] gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus A017934/97] gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M1015] gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus 58-424] gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M809] gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus MN8] gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH60] Length = 554 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I +I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|307293713|ref|ZP_07573557.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306879864|gb|EFN11081.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 764 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 17/353 (4%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 ++ + + A+ + + + I+ A A + I Sbjct: 195 VVGDHVRTTTAIFSALALITVPLIAIATMLVGFATVRSIRAIADATADLAAAQYDIDIGK 254 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRFLASMSH 258 K + + E L A +E + AE N AKS FLA+MSH Sbjct: 255 LARKDELGAVVTALETFRLQALEAQRVRQMEEESHRLQLAKSAAESANNAKSDFLANMSH 314 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLNAILG+++++ P +E I SG HLL LI++ILDLS+IEAG+ Sbjct: 315 ELRTPLNAILGYAQLLRR---DPKLDERQSNAARIIDESGSHLLTLIDDILDLSKIEAGK 371 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLS 377 +E+ +A+ L ++++RA+EK + ++ P L + D K +RQV++NLL Sbjct: 372 FEICPAALDLRGFASGIADIIRIRAEEKALAFSCEVSPDLPIMMLVDAKRLRQVLINLLG 431 Query: 378 NAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA+KFT G +V +T + ++D G GI+ +I + F Q + A Sbjct: 432 NAIKFTDRGHVGLQVSLTSRSDTEARVRFEVRDTGVGISADKIDAIFQPFEQVGDVQRRA 491 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA--ILPNTRVLNFIPEDN 485 G GLGL I++ ++ G +F + S+ G + LP ++ P ++ Sbjct: 492 -GGTGLGLSISRQLVRLMGSEFEVMSESGRGSQFAFELTLPIDSSISGEPAES 543 >gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1265 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 134/270 (49%), Gaps = 20/270 (7%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE N AKS FLA+MSHE+RTPLN +LG +++E +G KEY+ + + Sbjct: 880 KEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLETAPLGA----EEKEYVDEAITAS 935 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L NL+++ILDLSRIEAG+ + SL D+ +L A++K++E+ +D L Sbjct: 936 KRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELRFFLDEQL 995 Query: 359 SS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-----GWTSGRGQYISIKDNGPGI 412 S V DE +RQ++ NL+ NA+KF+ G + V + + D G GI Sbjct: 996 PSFVLGDEVRLRQILFNLVGNAIKFSDQ-GTISVQAYLLPFAKIAQERILFMVSDEGIGI 1054 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + + F QG QG GLGL I + ++ G+ I S G V L Sbjct: 1055 SDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLGTTVYLSL 1114 Query: 473 PN--------TRVLNFIPEDNHES-TQYKC 493 P L IP +H S QYK Sbjct: 1115 PFGSSKKATGAISLPNIPLSSHPSPAQYKV 1144 >gi|182677962|ref|YP_001832108.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633845|gb|ACB94619.1| integral membrane sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 1130 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 6/328 (1%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 L L++ A + A++L A + L L + A F Sbjct: 575 LGVLAVLASIIAAILGALYLQAALAPAAERAAIGAMLFTLYFILLIIAGIAAWLFVLTQE 634 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + A I + + ++ AE NLAKSRF+ +SHELRTPLN Sbjct: 635 SRSVAQEESHRQTALLRREIEAHKRTDQKLQKAKEVAEAANLAKSRFVVGLSHELRTPLN 694 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G+++++E + P + + I +HRS +HL LI+ +LD+S+IEAGR LS Sbjct: 695 AIMGYAQILERDVSIPSH---RRNAIRVMHRSAEHLSGLIDGLLDISKIEAGRLHLSRDE 751 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 + + + + M +L+A K I+ L V+ DEK +RQ+++NLL+NA+KFTA Sbjct: 752 VRFGEFLDHLVDMFRLQATAKGIDFVYIRSEHLPAVVFTDEKRLRQILINLLTNAIKFTA 811 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GRV + V + I+D G GI+ + + F +G A A G+GLGL I Sbjct: 812 E-GRVTLRVSYRYP-VARFEIEDTGMGISRNDQERIFYPFERGQHAGTYAIIGIGLGLTI 869 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + GG+ + S++ G + Sbjct: 870 TKLLTEIMGGEICLTSEIGVGSTFQVKI 897 >gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 389 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +V + +++AEE N KS +A+M+HE+RTPLNAI+GF+ ++ + Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G ++ S + L +++E + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ + + S + ++ D + Q++ +LL NA+KFT G V Sbjct: 259 TDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F + S QG+GLGL + + I+ G + S++ E Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 465 GVEVIAILP 473 G +P Sbjct: 374 GSTFWFTIP 382 >gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273] gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272] gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272] gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273] Length = 586 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKRSRFID 466 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 578 >gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] Length = 591 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +++E +R E + F+A++SHELRTP+ + G+SE I + + E E++ Sbjct: 353 RDMTEE--RRLE---KMRQDFIANVSHELRTPMVMLQGYSEAILDDIV--QTKEEINEFV 405 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I+ L L+NE+LDL+R+E+G EL + + V + Q A++K +++ Sbjct: 406 QIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLT 465 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + D M QV+ NL+ NA++ T GG V + V T G ++D+G G Sbjct: 466 VDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTL-VINTKNSGLTFEVQDSGAG 524 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 I E +IP + F + A ++ G GLGL IA++I+ H G+ + S + EG Sbjct: 525 IPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIFSV 584 Query: 471 ILPNT 475 LPN Sbjct: 585 YLPNR 589 >gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1042 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 9/266 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + E ++ AE+ + AKS FLASMSHELRTPLN++LG+++++ E Sbjct: 567 RDITASKRTQEELHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCE---EE 623 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ ++ + I +SG+HL LI EILD+++IEAG ++ + L ++ + + + R Sbjct: 624 LSQRQRKALNVIQQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSR 683 Query: 343 AQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ K + + +V ADE+ + QV++NLL NA+K+T G V + R Sbjct: 684 AQSKGLAFTFAPGADVPAVVSADERRLCQVLMNLLDNAIKYT-RHGEVVLRT-MMHERAV 741 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++D G GI + + F Q ++ +G GLGL I++ ++ GG+ + S Sbjct: 742 CFVVEDTGLGIRPEHLSEIFDVFHQVRDPSMT--VEGTGLGLAISKRLVHLMGGELQVAS 799 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486 K EG L V P + Sbjct: 800 KPHEGSRFWFELELRPVSAPTPVATN 825 >gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 878 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 16/247 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ F+ +MSHELRTP+ AI GF++++ + +G L N+T +E++ I+ + + ++N Sbjct: 629 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYSNTERMIN 687 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++L++++IE+G +L ++ L + + I LQ + + ++ I P L + A Sbjct: 688 LINDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRHQLTISIPPGLPLIRA 747 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------------TSGRGQYISIKDN 408 D + Q++ ++L NAVK+T GG + + + R +SI D Sbjct: 748 DAMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRSTLSDNRRYLLLSISDT 807 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++P + F +G +K G GLGL I + ++ GG+ + S + G Sbjct: 808 GVGIRPEDLPRIFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLGGRIWVESTVGVGSTF 867 Query: 469 IAILPNT 475 I+P Sbjct: 868 SIIMPIA 874 >gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1253 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 6/288 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L ++ R +AE + K FLA++SHELRTPL Sbjct: 826 QAMARSASHLAGIVIERTRVDAKLALSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 885 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + P E + I RS + +I+++LD+S I +G+ L Sbjct: 886 NAILGWSRLMQSQNFAP---ENLANGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQPE 942 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFT 383 + + R + ++Q A + I + S + D ++QV+ NLLSNA+KFT Sbjct: 943 HFDIAGLARSTVELMQPAALAREIALELDAPAGSELWFFGDAGRLQQVLTNLLSNALKFT 1002 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 A GG V V + + ++D+G GIA +P V F Q G+GLGL Sbjct: 1003 ASGGNVRVGLD-VEDGRLRLCVQDSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLGLS 1061 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 I++ ++ HGG S +G +LP ++ + + ES+Q Sbjct: 1062 ISRQLVDLHGGSLGASSAGEGKGALFTIVLPFEHGVSGLRPPSAESSQ 1109 >gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071] gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071] Length = 591 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + +++ + + A EKNI + + + D Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSGSVMIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+I+NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] Length = 618 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 12/242 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 374 EQRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEETERMIRMIND 431 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ---------EKNIEIFQKIDPSL 358 +L LSR++ G ++ ++ D + + + + EK I +KI Sbjct: 432 LLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQD 491 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V D M QVI N+++NA+K++ GG + V + + + +SI D G GI + ++ Sbjct: 492 LWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQ-IILSISDQGLGIPKKDLN 550 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F + A + G GLGL IA+ I+ H G+ S+ +G LP + Sbjct: 551 KIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFEPMS 610 Query: 479 NF 480 Sbjct: 611 EE 612 >gi|182412780|ref|YP_001817846.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839994|gb|ACB74246.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 734 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 11/270 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + L E RAE K+ FLA+MSHE+RTP+NAILGFS+++ E Sbjct: 205 RIALRKEQNERLLAEQAIRAESAAREKNAFLANMSHEIRTPMNAILGFSDLLATEL---P 261 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + ++ + I S LL LIN+ILDLS+I+AG EL L ++ + + Sbjct: 262 ADSKARQRVRAIRESATSLLQLINDILDLSKIDAGVVELHPEPTDLRELSDFMHTVFAQQ 321 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------ 395 A K + + +IDP+L + D +RQ+++NL+ NA+KFT G V + + W Sbjct: 322 AARKTLVLECEIDPALPHALMLDRSRLRQIVVNLIGNAIKFT-EHGTVKLGIRWAHHPAN 380 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I + D G GI + + F Q +QG GLGL I + I GG Sbjct: 381 RGSGTLEIEVADTGVGIPPEKQREIFQPFVQVDPQRAGEKQGSGLGLSIVERITQRMGGT 440 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 ++S++ G I P+ + +PE+ Sbjct: 441 VTLQSEVGRGTRFRLIFPDVTISLRLPENA 470 >gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] Length = 1031 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/450 (18%), Positives = 165/450 (36%), Gaps = 20/450 (4%) Query: 33 FDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV-YAANLSLGK 91 + + ++ L ++V + W + + A Sbjct: 234 YRMQRNEKSLQYLGLFCLSAMVYVATHGEKLLSAVWPDLPYEWFIRIQMIFSAFVYYFLL 293 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + + ++ + + ++ ++ IY + +I Sbjct: 294 RYIAETVQGLVHRWALYLSNAATL---IAVGSGLILPTVVFSELEPVIYLFSVFIILYIT 350 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + + + F + + + + L+ + + Sbjct: 351 TVMGRGIWRRSEDTGFMLIGI-------------LSIMVVITVHVLNLMGIYSNLIIVPL 397 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +L + L + D+ +R + K F+A+ SHELRTPL+ I+ + Sbjct: 398 EMLLFVVTQALLLAQRFSTTFTEVDQLSRRLLTLDGLKDEFMANTSHELRTPLHGIVNIA 457 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 + + G L+ + KE + I +G L L+N+ILD S+++ G L + L + Sbjct: 458 QSLLDGASGALSAKQSKE-LSMIVSTGNRLSTLVNDILDFSKLKNGEIVLHRQPVDLKAV 516 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + ++ + K + + Q+ +L + DE +RQ++ NLL NAVKFT G V V Sbjct: 517 TQSVLEVVTHLSAGKPLSLEQQWPENLPWLDTDEDRLRQILYNLLGNAVKFT-ESGTVRV 575 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 T IS+ D G GI+E + + S+ Q A G G+GL I + ++ Sbjct: 576 TADIIH-GHVRISVSDTGIGISEERLVDIFKSYDQIGYASDREYSGTGIGLSITKKLVEL 634 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GG+ S+ G LP+T + Sbjct: 635 GGGEIWAESEPGVGSVFHFTLPSTLIPPQT 664 Score = 54.9 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 22/113 (19%) Query: 375 LLSNAVKFTA----IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ NAV+ GG V + + R IS+ DNG G++ ++ ++L + Sbjct: 929 IVENAVRHGVTRQLSGGTVRIQIHEREER-ITISVTDNGVGMSPDKVNSLL--------S 979 Query: 431 IKSAEQGVGLGLPIAQ----SIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GVGL + ++ +G I S+L G V +P + L+ Sbjct: 980 GAHHTGGVGL-----RNIHARLLTLYGKGLQIESRLGFGTSVSFEVPLSTKLD 1027 >gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1093 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 124/252 (49%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +++ AE N AKS FL++MSHE+RTP+N ILG + V+ + Sbjct: 696 ITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPMNTILGMAGVLAASDL----P 751 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + E + I +G LL L+N+ILDLS+IEAG + E A ++ + + M++ A Sbjct: 752 PKHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKACDIVALAGKLTDMMRPDAA 811 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----GR 399 K + + + +L + +RQV++NLL NAVKFT G + + +G G Sbjct: 812 RKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTDQ-GEIVLELGREDHADTGA 870 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D G GI + + F Q + + GVGLGL I ++ GG + Sbjct: 871 WLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYGGVGLGLAICNKLVHMMGGSIRVD 930 Query: 460 SKLREGVEVIAI 471 S +G Sbjct: 931 STPGQGSVFTVS 942 >gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503] gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017] gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503] gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017] Length = 591 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + +++ + + A EKNI + + + + D Sbjct: 424 LALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+I+NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU028] Length = 565 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE + EL + ++L ++ I LQ +A K I+I +I+ + + Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ +++ +V V V + Y+ I+D G GI+E + + Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ ++S +G + Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVLF 562 >gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG] Length = 1307 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + +G + L V ++ + L + L + +L + ++ Sbjct: 557 FRPGETLVGTAAREKRVLTVNKVPVDYIKIASGLGQATPAQVVVLPLLFEGKVLGVIELA 616 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------FTYITYH 206 S F FL+ ++A S I + L Sbjct: 617 TFSQFTQIQRDFLAQIAEMIATSVNTISVNSKTAVLLTQSQELTAQLKDRSDELEQRQKA 676 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 L +SN ++ A +++EV + R+ EE KS FLA+MSHE Sbjct: 677 LQESNAELEEKAALLVRQNSDIEVKNGEIENARQVLEERAEQLAVSMRYKSEFLANMSHE 736 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L+++ E+ I+ +G LL LIN+ILDLS++EAG+ Sbjct: 737 LRTPLNSLLILAKLLADNAERNLSHKQV-EFAETIYGAGSDLLQLINDILDLSKVEAGKM 795 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 E+S + I+L+ +V + EKN++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 796 EVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 855 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G + ++ G+ S+ D G GIAEG++ Sbjct: 856 AVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMR 915 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ +S+ G LP Sbjct: 916 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQSQPGRGSTFTLYLPL 971 >gi|240145433|ref|ZP_04744034.1| putative sensory box histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|257202562|gb|EEV00847.1| putative sensory box histidine kinase/response regulator [Roseburia intestinalis L1-82] Length = 867 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AK+ F+++MSHE+RTP+N+I+G +E++ P +EY+ +I SG+ LL Sbjct: 261 EDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGRVLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +IN++LD S++EAG+ +L + + + I ++ R +E+ ID + + Sbjct: 317 TIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIPCKL 376 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 D +RQVI+NL++NA+K+T G VHV T Y + D G GI + + Sbjct: 377 KGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKEDQK 436 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F + + +G GLGL I+Q+++ GG + S+ +G + Sbjct: 437 ILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490 >gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 812 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 10/267 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + + Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYTPKPVC 663 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ + E + P + AD + QV+ N +SNA+KFT G Sbjct: 664 LYQFCAMMVQKMRNKVSEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + + + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I+ GG + S+L +G LP Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805 >gi|296186460|ref|ZP_06854863.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296048907|gb|EFG88338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 554 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 20/356 (5%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLAT 195 ++ A L+I L + + N L + +F ++ A+ I + + Sbjct: 165 ISFTNFALLIIGLYLLNVPNSKLHPQTYNAFLVMIFAILLSIINYYNFAKSFIQKSEILN 224 Query: 196 ALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSD--------ETRKR---- 241 HL + + + QA + L K+ + E +KR Sbjct: 225 KAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKAELEAIQSNIKYEEKKRLLNK 284 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYKEYIGDIHRS 297 A E ++ F A++SHELRTPLN I +++ + + N +Y+ I ++ Sbjct: 285 AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTIKQN 344 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL LIN ++D+++++AG +E++ S ++ I + + + + KNI + + Sbjct: 345 SYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDTEVE 404 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + D + +++LNLLSNAVKFT G ++V + + S ISIKD G GI + Sbjct: 405 EKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNI-YDSTDKVIISIKDTGIGIDKSMQ 463 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q +I +G G+GL + +S++ H GQ + S+L EG E I LP Sbjct: 464 KLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 519 >gi|225027308|ref|ZP_03716500.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353] gi|224955370|gb|EEG36579.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353] Length = 943 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + L V + A K A E A+ +++ + A+ N AK+ FL Sbjct: 513 VVTVWVLLIFGWLLTTMAVIAMRLSARKKAQKAAQETAEEMAELA-EHAQATNKAKTAFL 571 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 + MSH++RTP+NAI+GF+ + M ++ K + I S ++LL+LIN++LDL+R Sbjct: 572 SHMSHDMRTPMNAIMGFTSI----AMKNNPSDEVKNCLEKIDESSEYLLSLINDVLDLTR 627 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVI 372 +E+G+ + + L I + + + ++I + + + + +V D +R V+ Sbjct: 628 VESGKVKYNPVPADLKSITDSALDITKGFLTNRDISFKIQREEAKIPNVLVDPVRLRDVL 687 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQG 427 +N+LSNAVKFT GG + G + I D G G++E V F Q Sbjct: 688 VNILSNAVKFTPDGGTITFEARCQEKGGDGYINMHYRISDTGIGMSEEFTKEVFEKFAQE 747 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +++ GVGLG+ I + + GG ++SK EG +P Sbjct: 748 DSDVRTQYHGVGLGMAIVKKYVDMVGGTISVQSKKHEGTTFTVDIPLE 795 >gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 782 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-V 230 +A +S + T ++ L +S ++++ A+ LE Sbjct: 441 LADGRWLQISERRTKDGGYVSVGTDITTLKRHQERLVESERQLIATIADLKRSRRTLELQ 500 Query: 231 AKSLSDET------RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + L+D + +AE N +KS FLA+MSHELRTPLNAILGF+EV++ E G L + Sbjct: 501 TQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLGS 560 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y+EY DI SG +LL++I++ILD+SRIEA R L + + + + + + ++ A+ Sbjct: 561 EKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPAR 620 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + + ++ + V ADE+ + Q+++NLL NAVKFT GRV V + +I Sbjct: 621 AKGLTLSVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRR-ALDAVHIF 678 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G GI + +P + F Q + +G GLGL I++S+ HGG+ IRS++ Sbjct: 679 VEDSGIGIPKAVLPKLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSEVGC 738 Query: 465 GVEVIAILP 473 G V+ LP Sbjct: 739 GTIVLVRLP 747 >gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 537 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 4/297 (1%) Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + +L I L +T +S ++ L Q + + + + + + R Sbjct: 86 LYIDLLTIPLTDKDGRITGLIQIVTDTTQRSVIEQLRSQQRNELQLLKDRLQRQNVELAR 145 Query: 240 KRA--EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 A + K FLASMSHE+RTPL AILG +++ + +GPL++E I I + Sbjct: 146 INASLLKTTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVGPLSDEQM-GAIDGIKKG 204 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHLL+LIN+ LD++++EAGR EL + +S+ D+ ++ + N+ + ID + Sbjct: 205 SQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVADLIRRANLSLIFDIDSA 264 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + + AD + +RQ+++NLLSNA+KFT GG+V + V ++ D G GI+ + Sbjct: 265 VQVILADARRLRQILINLLSNAIKFTPAGGKVGLEVRGEPERGAVRFTVWDTGIGISAED 324 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q + G GLGL + ++ HGG + S++ G LP Sbjct: 325 AVRLFEPFQQIESERQKEVTGSGLGLALVAKLVRLHGGSVRVESEVGVGSRFHVTLP 381 >gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] Length = 1148 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 144/254 (56%), Gaps = 13/254 (5%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 I E + AK E ++ EE N +++RF +SMSHE+RTP+N+ILG +E+I + Sbjct: 185 FIEENKRAK----EETRKFEELNKSQNRFFSSMSHEIRTPINSILGLNEIILRQ---EDA 237 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ K+ G+I +G+ LL L+N+ILD+S+IEAG+ ++ S+ ++ E + M+ LRA Sbjct: 238 SDEIKKDAGNIQGAGRMLLALVNDILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRA 297 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-- 400 ++K + + +IDP+L ++ DE ++Q+++NLL+NAVK+T G V + + + Sbjct: 298 EQKGLTLNVEIDPTLPQELFGDEVRIKQILVNLLNNAVKYTNE-GTVTLHIEKEDIKEEK 356 Query: 401 --QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 S+ D G GI E IP + +F + + +G GLGL I + ++ G+ + Sbjct: 357 VRIIFSVSDTGMGIKEDSIPYLFDAFQRIDEEKNTKIEGTGLGLSIVKQLVELMDGEISV 416 Query: 459 RSKLREGVEVIAIL 472 S +G L Sbjct: 417 NSVYAQGSNFTVSL 430 >gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 389 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +V + +++AEE N KS +A+M+HE+RTPLNAI+GF+ ++ + Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G ++ S + L +++E + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ + + S + ++ D + Q++ +LL NA+KFT G VH Sbjct: 259 TDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVHWGYQEKENGQIRFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F + S QG+GLGL + + I+ G + S++ E Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 465 GVEVIAILP 473 G +P Sbjct: 374 GSTFWFTIP 382 >gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 652 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 6/260 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE-LETMGPLNNETYKEY 290 K L +E E N ++ F A++SHE +TPLN I +IE PL + K Y Sbjct: 382 KKLLEEEL----EYNKLRTEFFANLSHEFKTPLNVIFSALHLIEWSLDKNPLKKDKIKSY 437 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I + LL LI +LD+++I+A Y+L+ ++ IV+ + ++ K +I Sbjct: 438 LKTITHNSYRLLRLITNLLDITKIDANSYQLNICNCDIVKIVKSAVNSVKGHINNKTRKI 497 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + + + D + +++ NLLSNA+KFT G ++ V + G+ I +KD G Sbjct: 498 VFNTNVNEKIIACDPFDIERILYNLLSNAIKFTGEGDKITVEIK-DRGQSLNIIVKDTGI 556 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + F Q + + +G GLGL + +S++ HGG I SK +G I Sbjct: 557 GIPEEMQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSLVELHGGSISIESKPGKGSTFII 616 Query: 471 ILPNTRVLNFIPEDNHESTQ 490 LP +V N + E+ + ++ Sbjct: 617 KLPVFQVSNNLCENTRKKSK 636 >gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 747 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 90/311 (28%), Positives = 159/311 (51%), Gaps = 15/311 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-------DLIAE 227 + Q +++ D++ A + + + + E+ I Sbjct: 202 ALQYMLNHWEGDLTTAPPWVAEIDLIHRDGHVVQAEIITSFVRDEEQRLIVLGVARDITA 261 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + A+ R++AE N AKS FLA++SHELRTPL+A+LGF++++ T Sbjct: 262 RKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLAN---DNNLTPTQ 318 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +EY+ I+RSG+HLL LINE+LDL++IEAGRY + + +++ ++ + ++ + RA+ K Sbjct: 319 QEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIEDVQLLFRNRAEAKQ 378 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + + ++ + + +DE +RQ+++NLLSNA+KFT + G VH+ V + +++ Sbjct: 379 LHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDV-GSVHLHVIR-EEQRLLFTVE 436 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK-LRE 464 D G GI + + F QG + GVGLGL I+ + GG + S+ Sbjct: 437 DTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLIGGDLSVYSEGRGC 496 Query: 465 GVEVIAILPNT 475 G ++P Sbjct: 497 GSRFTLVIPLQ 507 >gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 476 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 105/287 (36%), Positives = 160/287 (55%), Gaps = 9/287 (3%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 L ML A+ L ++ +AE ++ K +D + E N Sbjct: 193 VLGAMLVIAILLVAAFGVQL------LVLRRAESRLHQEHMQRLKITADYAVEH--EANR 244 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS FLA+MSHELRTPLNAI+GFSEV++ ET GP+ + Y EY DI+ +G HLL++I+E Sbjct: 245 AKSAFLANMSHELRTPLNAIIGFSEVLQTETFGPIGQKRYIEYATDINMAGYHLLHVIDE 304 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 +LDLS+IEAG+ +L+ S I ++ + ML ++ +EI + + ++ + DE Sbjct: 305 VLDLSKIEAGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEIQRALTATIPVMETDEGK 364 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQ++LNL+SN++K+T GG V V+ + I+I D G G+++ E+ +T FG+ Sbjct: 365 LRQIVLNLVSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTGVGMSKDELALAMTPFGR 424 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A+ G GLGLP+ +S + GG F I S G V LP Sbjct: 425 IDSAMSYTRGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVSIQLP 471 >gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 884 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 6/242 (2%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + R A++ + AK FL++MSHE+RTPLNAILGF ++ + + ++ +++Y+ I Sbjct: 267 LIDARLEAQKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDQDL----SKQHRKYLEII 322 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SG++LL++IN+ILD S++ +G + + S+ + + + + A K I I I Sbjct: 323 LNSGENLLSIINDILDFSKLRSGEFTIEPRIFSIHNEISHTLELFVASANLKEITITSFI 382 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 DP + ++AD ++Q++ N LSNA+KFT +GG +HV R +S++DNG GIA Sbjct: 383 DPVIPKELYADSLRIKQILSNFLSNAIKFTRVGGHIHVEATC-KNRTLRVSVQDNGIGIA 441 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G+I + T+F Q A G GLGL I + + G + S+L +G LP Sbjct: 442 AGDISNIFTAFTQAGGAEVEHMVGTGLGLSICNQLSKHMNGSVHVVSELGQGSTFWVQLP 501 Query: 474 NT 475 Sbjct: 502 VE 503 >gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L] Length = 466 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTHQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDKEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 633 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 154/295 (52%), Gaps = 17/295 (5%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 Y + + + + A++ + ++ A+ N AK+ FLAS+SHELRTPL Sbjct: 119 YGWNPEELNLAKLVGQFLAIAQARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPL 178 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+GFS+++ + + T + I+RSG+HLL LIN+IL++S+IEAGR L+E Sbjct: 179 NAIIGFSQLLHRDPSLAPHRPT----LDIINRSGEHLLELINDILEMSKIEAGRTTLNEK 234 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 I ++ + QLRAQEK + + + P + + D +RQV++NLL+NA+KFT Sbjct: 235 IIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFT 294 Query: 384 AIGGRVHVTVG-----WTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 A GG V + V T + + D GPGIA E+ + F Q +KS Sbjct: 295 AQGG-VTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKS 353 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 QG GLGLPI+Q + GGQ +RSK+ +G +P + P + Sbjct: 354 -CQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSA 407 >gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1361 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 171/394 (43%), Gaps = 20/394 (5%) Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 R + + +L + ++ +A +IA ++ L Sbjct: 562 SARNSYTLPLLYEDRLQGVLEVATLNPLNTQHRQFLDAACQIIAATLFT----SLQRERI 617 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + + A + +A H L ++ A + + Q + Sbjct: 618 ANLLVLSKAATQRAEAQSHQLQLANAQLEEQQQQLQQQTEELQQSNTQMEHQQQLLQQQA 677 Query: 225 I------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 L+ ++ ++ + EE + KS FLA+MSHELRTPLNAI+ S ++ + Sbjct: 678 EELRINNEALQHSQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDE 737 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G L+ E+ E I+ +G LL LIN+ILDLS++EAGR E+ + ++V E + Sbjct: 738 TGRLDQESI-ERTRVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPL 796 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + AQEK IE+ D +D + + Q++ NLLSNA+KFTA G + + + + Sbjct: 797 FRDSAQEKKIELRFD-DQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGSVI-LRLAKSDH 854 Query: 399 RG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +S+ D G GI++ ++P + +F Q +I G GLGL I G+ Sbjct: 855 PQYPIRLSVTDTGIGISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEV 914 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ +G + +LP P +N E Q Sbjct: 915 ELHSEEGKGSQFTLLLPLAH-----PHENTEHGQ 943 >gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 784 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 16/266 (6%) Query: 234 LSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVI-----ELETMGPLNNE 285 E +K EE + K+ F +++HELRTPLN I G +++ + E Sbjct: 504 EQKEAKKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFGALQLLELDFKQDEIEKKEALL 563 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + I + ++ LL L+N I+D+++IE+G Y+L + ++++V + + + Sbjct: 564 GVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDIVNVVENITMSVSEYMEI 623 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + I + + D M +++LNLL+NA+KFT GG++ V + ISI Sbjct: 624 RGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQIKVNMYEKEENM-MISI 682 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI E I + F Q ++ + +G G+GL + +S++ GGQ ++SK+ +G Sbjct: 683 QDTGIGIPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSLVELQGGQITVKSKIGQG 742 Query: 466 VEVIAILPNTRVLNFIPEDNHESTQY 491 E I LP + ++EST+Y Sbjct: 743 SEFIIALPIGLL-------SNESTEY 761 >gi|255533357|ref|YP_003093729.1| ATPase [Pedobacter heparinus DSM 2366] gi|255346341|gb|ACU05667.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 706 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 KRA +++ +KSRFLA+MSHE+RTPLN+++GFSE + + P K+ + I S + Sbjct: 328 KRAAQDSHSKSRFLANMSHEIRTPLNSVVGFSEQLSQGILSP----EQKDQVDAIRNSSE 383 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSL 358 LL+L+NEILD S+ E G+ L D + E + + A KN+ + K+ Sbjct: 384 MLLSLVNEILDFSKYEVGKINLENVPFLPEDEIMEVFNSMNVLAINKNLLLENKVSLEKG 443 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEG 415 + D ++Q+I+NLL+NA+KFTA G +V++ V + ++D G GIA Sbjct: 444 ICLAGDRLRLKQLIMNLLTNAIKFTASGKVTLKVNLAVHGKKHALLKVQVEDTGIGIAPE 503 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F Q + KS +QG GLGL I + I+ GG+ + S + +G +P Sbjct: 504 DQEFIFDEFAQVYSSTKSRQQGTGLGLAICKKIVELQGGKISVNSVMGKGSVFSFEIP 561 >gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 655 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 8/254 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + RAE+ KS FLA+MSHE+RTPLN +LG ++V+ + Sbjct: 244 RDVREERRKAHELRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLGMAQVLAHGKL--- 300 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E E +G I SG L+ L+N+ILDLS+IEAGR +LS L + + + Sbjct: 301 -TEAQAEQVGVILDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLRHKLSGLFKLHEAA 359 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSG 398 A EK I I +DPS+ + D +RQ + NLLSNA+KFT+ G + V + Sbjct: 360 ANEKGIGIRLFVDPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEVMLVVTSEPVQSGA 419 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + + D G GIA ++ + SF Q + G GLGL I + + GG Sbjct: 420 HRVIMHVSDTGVGIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSITRRLARMMGGDVTA 479 Query: 459 RSKLREGVEVIAIL 472 S++ +G Sbjct: 480 VSQVGKGSIFTLKF 493 >gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H] gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H] Length = 1000 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 17/285 (5%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMSHELRT 262 L K N++ L +L E S S +++A+E N AKS FLASMSHE+RT Sbjct: 425 RLHKENLEQL-INIRTQELRFTNEKLNSESKAHALAKQQADEANRAKSVFLASMSHEIRT 483 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N ++G E++ + ++Y I SG+ LL+++N+ILD S+IEAG LS Sbjct: 484 PMNGMIGTLELLTDTKLTS----EQQKYAQTILYSGESLLDILNDILDYSKIEAGHIALS 539 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVK 381 AI L + + + +++ RAQ K++++ + ++ + AD +RQ+++NL++NA+K Sbjct: 540 YRAIDLGKLGEDVVHLMRARAQNKSLQLHFEKKGNIENWRVADLGKLRQILINLINNAIK 599 Query: 382 FTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 FT G + +++G S+ D G GIA+ + V +F Q + Sbjct: 600 FTQR-GSIVLSIGVNDESSSGDSEVTFSVTDTGCGIAKDKQADVFQAFTQVDNLQSAV-- 656 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 G GLGL I Q +++ G + S+ G +P R Sbjct: 657 GTGLGLAICQRLVSAMQGTLSLESEENRGSCFAFTIPLARASAEA 701 >gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] Length = 565 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 394 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE + EL + ++L ++ I LQ +A K I+I +I+ + + Sbjct: 395 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 452 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ +++ +V V V + Y+ I+D G GI+E + + Sbjct: 453 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 511 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ ++S +G + Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIGVKSAPGKGSIFKVLF 562 >gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] Length = 581 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 8/259 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + AE N AKS FL+ MSHE+RTP+N I G + + + P ++ + Sbjct: 187 RKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIAKKSLNDPG---KLQDCL 243 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I S +LL+L+N++LD+SRIE+G+ EL +L ++ +M + +A++ I + Sbjct: 244 NKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFERIYVMFKQKAEDAGISLE 303 Query: 352 QKI-DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IK 406 + D + SV D + QV +NL+SNA+KFT GGRV + T + Q +S + Sbjct: 304 FQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILEAHETEIKDQEVSLQFTVT 363 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI E + F Q G GLGL I + + GGQ + SK EG Sbjct: 364 DSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNFVELMGGQISVYSKTGEGS 423 Query: 467 EVIAILPNTRVLNFIPEDN 485 + R E Sbjct: 424 RFTVDITLQRPPAAQIEQE 442 >gi|16127449|ref|NP_422013.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236261|ref|YP_002518698.1| two-component sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424901|gb|AAK25181.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965434|gb|ACL96790.1| two-component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 657 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 14/364 (3%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS--TQAIMSM 182 TL P + + + L+ + + L A+F + + L+ ++ Sbjct: 146 TLQRPIKLSSQTVGTLVLVAKRPGLAQTLARDLALTGALFFGAAGMAILLANSLARRLAQ 205 Query: 183 HVLDISLAGMLATALSFFTYITYH----LFKSNVKILSCQAEKDDLIAEL-EVAKSLSDE 237 + +S A F + +F+S + + + + + A + + Sbjct: 206 PMERLSEAMHETAVGGRFKALEETADDDVFRSLIASFNHLVARLECNDQDLRGAMAELVK 265 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R A N+ KS FLA+MSHE+RTPLN +L ++V+ ++ + ++ +E + I S Sbjct: 266 ARDDANAANVLKSHFLANMSHEIRTPLNGVLAMADVMAMDQL----SDIQRERLAVIRES 321 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G LL ++N++LDLS+IEAGR E+ + + + + +A+ K + + P Sbjct: 322 GAVLLGVLNDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRETFVPQARAKGLAFEVGVAPE 381 Query: 358 LSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 +W D +RQ++ NL+SNA+KFT G G G I + D G GI+ Sbjct: 382 AQGLWRGDADRLRQILGNLISNALKFTLDGAVAVRFASAEDGSGLRIDVADTGIGISPEI 441 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPN 474 +P + F Q G GLGL I + + A G ++S+ G + LP Sbjct: 442 LPRLFDKFVQADSTTTRRFGGSGLGLAICRELAAMMNGSIKVQSREGRGSTFTVLVGLPR 501 Query: 475 TRVL 478 L Sbjct: 502 EETL 505 >gi|255305464|ref|ZP_05349636.1| two-component hybrid sensor kinase/response regulator [Clostridium difficile ATCC 43255] Length = 801 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + D+ R+ A E N AKS FLA+MSH++RTP+NAI+G + + + Sbjct: 267 LRFFVMTRLQLQELDKNREMALEANKAKSEFLANMSHDIRTPMNAIVGMTAIAKAHI--- 323 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + E K + I S +HLL LIN++LD+S+IE+G+ L+ ISL +I+ + ++Q Sbjct: 324 DDQEQVKNCLRKITLSSKHLLGLINDVLDMSKIESGKLALTMEQISLREIIEGIVSIIQP 383 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + + K I+ L+ VW D + QV+LNLLSNA K+T GG + + + Sbjct: 384 QVKVKKQNFDIHINNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGSIQLDLFEEKSPK 443 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +I +KDNG G++ + + S+ + +G GLG+ I + I+ G Sbjct: 444 GEDFVRVHIKVKDNGIGMSPTFLKKIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEG 503 Query: 455 QFLIRSKLREGVEVIAI 471 ++S+L +G E I Sbjct: 504 TINVQSELDKGTEFHII 520 >gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4] Length = 599 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 116/468 (24%), Positives = 189/468 (40%), Gaps = 19/468 (4%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 + V LP VL+ + + P+ I ++ + + + Sbjct: 51 AAARCVVLACLPALVLVPLTLSFFQGVAVALPLGVAIVAGLFLIAVVAALWLARLSSRQP 110 Query: 102 EVYVWR--IWLLVGQIAIGLCWTLLTLVEPG-----TWTPEYLTIYKSATLLIALSISAL 154 + + + G+ +TL + + Sbjct: 111 AIRHSLDTSASIDLSLFPGMVFTLDAQARVETVGGRDARDFLPFLRNPLGRPFIDQVHVT 170 Query: 155 SNFMLPYAVFLSFFPVVVALSTQAIMSMH-----------VLDISLAGMLATALSFFTYI 203 A + + + + A + Sbjct: 171 DRIAFVRAFDALRQGEDIGRVKLRLARPTNAHSEGSNGENLHGEITSDEAADGTLMAVGL 230 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + ++ + E + + + N AKSRFLA++SHELRTP Sbjct: 231 DMAVRRDERGGIAGIFVQMLDCREQQQMAQRLVKLDADLQTANEAKSRFLAAVSHELRTP 290 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS+++ + G + +E ++EY+ I +SG HLL+++N +LD+ RIEAGRYEL Sbjct: 291 LNAILGFSDILMGDYFGRMEDERHREYVRLIRQSGGHLLSVVNTMLDMCRIEAGRYELLV 350 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 SL + +C ML L+AQEK +++ +I +S + AD + +RQ+++NL+ NA+KFT Sbjct: 351 EPFSLSQAIHDCENMLALQAQEKGVKLTSRIGRDVSELTADPRAVRQILINLVGNAIKFT 410 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V IS+ D G GIA+ I + F Q GVGLGL Sbjct: 411 EPGGVVTVDAARFGKD-LVISVSDTGIGIAQDRILLLGQPFVQVDSDYNRKFDGVGLGLS 469 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + + ++A HGG FL+ S+ EG V LP + ES Q Sbjct: 470 LVKGLVALHGGTFLLTSREGEGTVVSITLPIDGSGIARVQSTGESRQI 517 >gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae L20] gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 616 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 20/355 (5%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201 L + +AL F + + + ++ L T I++ +L G+++ FF Sbjct: 15 VLRLGRGKAALLGFFVLASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFN 74 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I L KS +++ + L + + E+ N KS +A++SHELR Sbjct: 75 LIVEKLEKSRIQLEQSVYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELR 127 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+G S ++ + + +EY+ I+ S L ++ ++I+DL +I++ R EL Sbjct: 128 TPLNGIIGLSRILLEGEL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVEL 183 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 I ++ + L A++ I+ L + ++ D + Q++ NL+SNAV Sbjct: 184 FRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAV 243 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG ++++V S++D G GI + E V F Q + + QG G+ Sbjct: 244 KFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGI 303 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 GL I++ I GG +RS++ +G + P + +S + +A Sbjct: 304 GLAISKRIAKLMGGDLTLRSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 352 >gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 463 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 167/349 (47%), Gaps = 28/349 (8%) Query: 159 LPYAVFLSFFPVVVAL------STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 L VF F P VVA +A L ++A + S + Sbjct: 119 LGRVVFGPFVPEVVAALPERMDVVRAQGLGSPLAAAVAYFSQVLEALMAVGHRSWLASRI 178 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ S + +L E+ A+ S + R R E + +S FL ++SHELRTPL +I+ +SE Sbjct: 179 QLESAGEIRREL--EVRDARMASLQARLR--EMDRLQSSFLGTVSHELRTPLASIIAYSE 234 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ G LN E + + I G+ LL+LI ILD+S++EAG+ L+ + + + ++V Sbjct: 235 LLSEGITGMLNPEQLQ-CVQSITEMGRTLLDLITSILDISQLEAGKLRLAFAPVDMAEVV 293 Query: 333 RECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + +++ K +++ + V AD+ + QV++NLL+NA+KFT G V V Sbjct: 294 VSAVSSVTPQSRRKGLKLEVVLPELRQPRVLADKGRLYQVLVNLLANALKFTPE-GHVRV 352 Query: 392 TVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + + + ++D G GI + ++ + +F Q + GVGLGL I Sbjct: 353 RLSEVGPQEELGTLGYRFCVEDTGVGIRQDQLERIFQTFYQVDSSSTREFGGVGLGLSIV 412 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTR---------VLNFIPEDN 485 + + HGG+ L+ S+ +G A+LP+ VL +PE + Sbjct: 413 KRFVEGHGGKVLVTSQPGQGSCFTAVLPSRPPQVGESGVHVLPPLPEPD 461 >gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 1150 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 5/270 (1%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 F+ + L I+ + + + E+R R+E N KS+F+A+MSHELRTPLNAI Sbjct: 880 FRDSSAALPSIFGATRDISRHKETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAI 939 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G+SE+++ E + Y++ + ++G+ LL +IN+ILD++ +E+ +L + Sbjct: 940 IGYSEMLQEEYRSDPQGQIYQDM-ERVQKAGRQLLQIINDILDMADLESQTAQLQAESFD 998 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + R+ +Q + + + D ++ ++++D + +RQV+++LL+NA +FT G Sbjct: 999 ICSEARQVAQSVQAAIHKNGNTLDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFT-ENG 1057 Query: 388 RVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 +V +TV S + ++D G GI + F G + G GLGL I Sbjct: 1058 QVALTVSAEQRHSEPWVLLRVRDTGIGIDPSIHEQIFEPFTLGDSSSTRLYGGSGLGLSI 1117 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ GG ++S+ +G E LP Sbjct: 1118 SRRFCEMMGGAITLQSETGKGAEFTVALPL 1147 >gi|171057603|ref|YP_001789952.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170775048|gb|ACB33187.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 822 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 30/354 (8%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 ++ + +A +A L S T + + Sbjct: 165 ADGMAPLSVEIHELALQANRDIADQVALRNEAVRRQNGIAIGLTIFQSLLTLLFAVVVVR 224 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 V+ L + LE + E R AE+ + AKS FLA+MSHELRTP N +LG Sbjct: 225 QVRALQQRR------THLEALAANLQEARIEAEQASRAKSAFLANMSHELRTPFNGLLGM 278 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +++ + + +Y+ SG+HLL ++N++LD+S++E+GR E++ SLI Sbjct: 279 LSLLQRSPL----DARQADYLQTARESGEHLLAILNDVLDISKLESGRLEITPERTSLIR 334 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ + ++ +AQ K++ + + + AD K ++QV+ NL+ NA+KFT G V Sbjct: 335 VLGDVRSVMSPQAQAKHLRWSVTVADDVPVWIRADAKRLKQVLFNLVGNALKFT-ENGEV 393 Query: 390 HVTVGWTSGR------------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 V V ++ D G G+ + + F QG I Sbjct: 394 SVHVDCVPAPATASAAPGAAEAVPAATAWLRFAVTDTGIGMDALTLARLFQRFSQGDETI 453 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 G GLGL I++++ GG +RS+ G +LP R+ ED Sbjct: 454 NRRFGGTGLGLEISRTLARRMGGDITVRSEAGRGSVFTVLLPFERIDAPPAEDT 507 >gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613] Length = 464 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + TY+ Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N KI S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 464 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + TY+ Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N KI S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] Length = 464 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + TY+ Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTYVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N KI S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKIKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|291539348|emb|CBL12459.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 867 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AK+ F+++MSHE+RTP+N+I+G +E++ P +EY+ +I SG+ LL Sbjct: 261 EDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGRVLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +IN++LD S++EAG+ +L + + + I ++ R +E+ ID + + Sbjct: 317 TIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIPCKL 376 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 D +RQVI+NL++NA+K+T G VHV T Y + D G GI + + Sbjct: 377 KGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKEDQK 436 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + +F + + +G GLGL I+Q+++ GG + S+ +G + Sbjct: 437 ILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490 >gi|116622396|ref|YP_824552.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225558|gb|ABJ84267.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 610 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 178/412 (43%), Gaps = 31/412 (7%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 A+ L ++ + + W LV G+ Sbjct: 61 VCYATALVLLRLGHFRRASRAYL----AGTWIWATLVCSSYGGV--------RSPGALLY 108 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLA 194 +A LL + + + L A+ + + L Q + + +I + +L Sbjct: 109 VSMPASAAWLLGSTAAIRTAGGCLLSALVFTVLEMTHGLPLQRMATPLGTWNIVVQAVLI 168 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 A+ + + + + Q + L + ++ E R +AE N AKS FLA Sbjct: 169 NAIP----VGEIIGRLRETLQELQRHQQHLASLVDQRTQQVVEARDQAESANRAKSAFLA 224 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPL+ IL S+++ +E I I SG+HLL LI+++LD+++I Sbjct: 225 NMSHELRTPLSVILASSDLLNES----DPTPDQREDIARISHSGKHLLGLIDDVLDVAKI 280 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EAG+ +L+ +A LI VR + M+++RA+EK + + P + V D +RQ+++ Sbjct: 281 EAGKEDLAIAASDLISTVRTVVEMMRVRAEEKCLSLVYYQAPDVPRYVRVDAPKLRQILI 340 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSG---RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGS 428 NLL NA+KFT G V + + +G S I+D+G G+ + + + F Sbjct: 341 NLLGNAIKFTRK-GTVKLQLSAKTGAEPGLARFSFDIEDSGVGMPQHHLGRIFEPF---E 396 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 ++ + G GLGL I Q + GG +++S + G LP Sbjct: 397 VSNPGPQTGTGLGLTITQRFVELMGGTLVVKSDVGRGSRFEVELPLELAKES 448 >gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] Length = 1035 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 8/265 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + + + RK AE + K+ FLA +SHE+RTPLNAI+GFSE++ E GP Sbjct: 769 LRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGP 828 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + N+ Y++Y+ DI+RSG H+L L+N++LD+S+IEAG ++ A+SL D + E I ++Q Sbjct: 829 IGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQP 888 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +A + + I +L + AD + ++QV LNLLSNAV+FTA GG+V V+ + Sbjct: 889 QANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDV 948 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQ--------GSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D G G+++ E+ L F Q A +G GLGLP+ ++++ + Sbjct: 949 VMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANR 1008 Query: 454 GQFLIRSKLREGVEVIAILPNTRVL 478 QF I S +G V + TRVL Sbjct: 1009 AQFAIDSNPGQGTVVEIVFSPTRVL 1033 >gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 781 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNAAD 455 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 456 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 512 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 570 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626 Query: 465 GVEVIAILP 473 G +P Sbjct: 627 GSTFRFTIP 635 >gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] Length = 892 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 8/284 (2%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + + + + I + + ELEV + R+ A + + KS Sbjct: 218 LAGSINTMAASLQRAQTELQENIEQATDDLKQTLDELEVQNIELNLARREALDASQTKSD 277 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTPLN ILGF+ ++ G N+ EY+ I S LL++IN+ILD Sbjct: 278 FLANMSHEIRTPLNGILGFTRLLS----GTRLNKRQLEYLQTIESSSTSLLSIINDILDF 333 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEAG+ L ++ +++ DI+ + I ML A +K+IE+ + + + D ++Q Sbjct: 334 SKIEAGKLVLDQAPVNVSDIIDDVITMLAPEAHKKHIELAALVYQDVPQEIMGDSLRLKQ 393 Query: 371 VILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQG 427 ++ NL++NA+KFT G + V + G S++D G G+ + + + +F QG Sbjct: 394 ILTNLINNAIKFTHTGSVIVRVMLEEQEGSDVTLKFSVQDTGIGMTDDQQKNLFKAFSQG 453 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I++ ++ + G+ S G E Sbjct: 454 DESTSRRYGGTGLGLVISRYLVEHMQGELGFDSTAHVGSEFFFS 497 >gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 723 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 3/229 (1%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSGQHLLN 303 N K F A++SHE RTPLN I +++E + + P + +Y I ++G+ LL Sbjct: 460 NKLKMEFFANISHEFRTPLNLIFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLR 519 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L N ++D++++++G +EL +++ +VR+ + + K +E + + Sbjct: 520 LANNLIDITKMDSGSFELELENCNIVSLVRKVACSVAEHIEYKELEFEFDSEIEEKIIAC 579 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + +VILNLLSNAVKFT IG +V V + +T IS+KD G GI++ + + Sbjct: 580 DPFNIERVILNLLSNAVKFTDIGDKVSVNI-YTEEGKVLISVKDTGIGISQEKQELIFKR 638 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 FGQ + + +G G+GL I +SI+ H GQ + S+ G E I L Sbjct: 639 FGQADKSFTRSNEGTGIGLSIVKSIVELHNGQISVESEEGVGSEFIIEL 687 >gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] Length = 389 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +V + +++AEE N KS +A+M+HE+RTPLNAI+GF+ ++ + Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G ++ S + L +++E + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ + + S + ++ D + Q++ +LL NA+KFT G VH Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVHWGYQEKENGQIRFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F + S QG+GLGL + + I+ G + S++ E Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 465 GVEVIAILP 473 G +P Sbjct: 374 GSTFWFTIP 382 >gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 525 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + R +AEE + KS FLA+MSHE+RTPLNAI+GFS++I + Sbjct: 285 VTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDE 340 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y + + LLNL N+ILDLS +EAG ELS + L DI + + +++ Sbjct: 341 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELY-VKSV 399 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + D + + Q+++NL++NA+KFT+ G +H + Sbjct: 400 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSA-GEIHFGFQEKAD-MVQFY 457 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + T+ FG+ QG GLGL I + ++ GG+ +RSK + Sbjct: 458 VSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGK 513 Query: 465 GVEVIAILPNTR 476 G LP R Sbjct: 514 GTVFYFTLPVKR 525 >gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 534 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + I ++ Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + P+ ++ D+K + QVI N ++NA+KFT G++ + Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTSEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI ++ V F + S +G GLGL I +SI+ + GG + S++ Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518 Query: 464 EGVEVIAILPNTRV 477 G P V Sbjct: 519 TGSRFWFTHPYQSV 532 >gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 389 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +V + +++AEE N KS +A+M+HE+RTPLNAI+GF+ ++ + Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS----IIDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G ++ S + L +++E + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ + + S + ++ D + Q++ +LL NA+KFT G V Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F + S QG+GLGL + + I+ G + S++ E Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 465 GVEVIAILP 473 G +P Sbjct: 374 GSTFWFTIP 382 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 9/241 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E R AE N AKS FLA+MSHE+RTPLNAI+G + ++ + ++ +Y+ + Sbjct: 974 EARVAAESANRAKSEFLANMSHEIRTPLNAIVGLTHIMLN---YKTDPASHGKYLQTMKD 1030 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID- 355 S L+ LIN++LDL+RIEA R EL + L ++VREC+ + +++ EK + Sbjct: 1031 SADTLMQLINDVLDLARIEADRVELEMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGL 1090 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411 P + V D ++Q+++NLLSNAVKFT GR+ V V R I ++D G G Sbjct: 1091 PHGTVVETDVLRLKQILMNLLSNAVKFTQT-GRIDVEVSAAPARSELLPVTIRVRDTGVG 1149 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA +I + F Q +I G GLGL I++ + GG+ + S++ +G Sbjct: 1150 IAADKIEHIFAQFTQEDASITRRFGGSGLGLAISRRLSEMLGGRLTVESEVGKGTVFSLS 1209 Query: 472 L 472 L Sbjct: 1210 L 1210 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 9/255 (3%) Query: 223 DLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + A + A++ DE R RAE E + AK+ F +++SHE R + +E Sbjct: 309 QIAAGIANAQAYEDE-RSRAEALAELDRAKTAFFSNVSHEFR---TPLTLLLAPLEEVLA 364 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 P +E + +R+ LL L+N +LD SRIEAGR + + ++L E Sbjct: 365 DPATTPRDRERLDVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNLACYTAELASNF 424 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + + I P V+AD + +V+LNL+SNA K+T G V +++ + Sbjct: 425 RSAMDRAGLAYKLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLE-GEVEISLS-EADG 482 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D GPGI E E V T F + + +G G+GL + + ++ HGG+ ++ Sbjct: 483 HAVLAVRDTGPGIPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLK 542 Query: 460 SKLREGVEVIAILPN 474 S+ G LP Sbjct: 543 SETGRGSTFFVRLPL 557 >gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1169 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 9/294 (3%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 A+S + + + + DL + + R++A A+S FLA Sbjct: 375 GAVSEILSVGSDVTARLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLA 434 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+NA+LG + ++E + E + I+ SGQ LL +IN+ILD+S+I Sbjct: 435 NMSHEIRTPMNAVLGLAYLLERQ---ENLPEEACDLARKIYHSGQSLLGIINDILDVSKI 491 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVIL 373 E+G+ + ++ L ++ ++ A+ K++ + + D + Q+++ Sbjct: 492 ESGKILIEQTRFQLSQVLDNLATIMTTAARGKDLALAIVPPRDCDWPLLGDPLRLGQILI 551 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 NL +NA+KFT G V V + +++D G GI + F Q Sbjct: 552 NLTNNAIKFT-DSGVVEVRITPVESSASNLVMRFTVRDTGIGIDAETQARLFQPFMQADA 610 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + G GLGL I++ ++ GG+ + S G +P R P+ Sbjct: 611 STTRRFGGSGLGLMISRQLVELMGGRLGVESAPGVGSTFWFEVPLGRTEPDAPD 664 >gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 873 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 9/319 (2%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P VAL ++++ + + + + ++ + L + I + Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDITDR 354 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++++ AKS FLA+MSHE+RTP+NAI+G SE++ N + Sbjct: 355 RRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPR 410 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + +H+S +L+ +IN+ILD S++EAG+ L E +V C + +A +KN+ Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKKNL 470 Query: 349 EIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 ++ + ++ + V D+ + Q++LNL+ NAVKFT G V + V + S+ D Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESEHGFD-FSVSD 528 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI E + ++ F Q + +G GLGL I++ +++ + G+ + S +G Sbjct: 529 TGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKGSC 588 Query: 468 VIAI--LPNTRVLNFIPED 484 LP L P + Sbjct: 589 FSFSLQLPKQSQLLAEPIE 607 >gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1150 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 17/275 (6%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ELE + ++ AE + AKS FLA+MSHE+RTP+NAILGF++++E Sbjct: 661 ITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQILER---DSTLG 717 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ I R+ HLL+++N+ILD+SRIEAG+ E + +L + +M RA Sbjct: 718 PDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFEDLELMFIPRAV 777 Query: 345 EKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 K +E+ + + SL AD +RQ+++NLL NA KFT+ G V + Sbjct: 778 SKGLELTFEKNGSLPRAGHADPGMLRQIMVNLLGNACKFTSQ-GEVTFRISAEKNSEACG 836 Query: 403 ---------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++D+GPGI E+ + F QG E G GLGL I++ G Sbjct: 837 TGQGGFTLNVQVQDSGPGIDPEEMDRIFDPFHQG--GRDPGEGGTGLGLHISRKYARIMG 894 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 G + +G +P + + + S Sbjct: 895 GDLSVSPHTEKGSLFCLQVPVQQATRPVEDGKPPS 929 >gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] Length = 1122 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 9/282 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + I E E ++ +E + N AKS FLASMSH++RTPLNA Sbjct: 451 LISEQDSSQRFITVTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNA 510 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G + + P +++ E + I S Q LL LIN++LD+S+IE+G+ +L+E+ Sbjct: 511 VIGLTNLAL---YSPEDSKKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEF 567 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 L + + + + Q + ++ + + + D + QV+ N+L NAVKFT Sbjct: 568 ELGEWLSGVVTVTQSQTGVRSQHFDVNVWNITHELLCGDTVRLGQVLTNVLGNAVKFTPK 627 Query: 386 GGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G +++ + + + D G G++ + + F + + K QG GL Sbjct: 628 DGEIYLDITEVPSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGL 687 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G+ I + I+ GG + S+ +G L +P Sbjct: 688 GMAITKRIVDLMGGTIRVESEPEKGTTFTIGLSIRLSSRHVP 729 >gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri] gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] Length = 927 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 123/258 (47%), Gaps = 10/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 376 ERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 432 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + I + SG HLL L+NEILD S+IE + EL+ ++ +DI+ Sbjct: 433 -KDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYLS 491 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 + K ++ + V D+ +RQ+I NL+SNAVKFT G + + T Sbjct: 492 VCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE-GSITLNFSHTLTGK 550 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I IKD G GI E + + + Q + G GLGL I + + G Sbjct: 551 GKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYI 610 Query: 457 LIRSKLREGVEVIAILPN 474 + S +G +LP Sbjct: 611 SVSSSEGKGSCFTLVLPL 628 >gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 1231 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 8/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E++V + RAE + AKS FLA+MSHE+RTP+N +LG +E++ + Sbjct: 658 VTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDT--- 714 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K + I +SG LL +IN+ILD S+IEAG+ +L + V + + +L A Sbjct: 715 -RQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 773 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRGQY 402 EK+IE+ +ID S+S V D RQ++ N++ NAVKFT G V ++ Sbjct: 774 EKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESI 833 Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S ++D+G GI ++ T+ F Q + +G GLGL I ++ G+ + S Sbjct: 834 FSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVS 893 Query: 461 KLREGVEVIAILP 473 ++ G +P Sbjct: 894 EVGRGSAFEVDIP 906 >gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44] gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44] Length = 609 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 4/237 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 374 ERIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQ--FLTVTQEETERMI 431 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 432 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVIFKRSFSKKSRFID 490 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + IS+ D G GI + + + Sbjct: 491 MDGDKITQVLYNIISNALKYSPEGGTVTYRL-RDREDMLEISVSDQGMGIPKENVEKIFE 549 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + A G GLGL IA+ ++ HGG +S+ +G + LP + + Sbjct: 550 RFYRVDKARSRQMGGTGLGLAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLPMAKDED 606 >gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1764 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 150/314 (47%), Gaps = 20/314 (6%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDE 237 S +I +A L Y L K + +L + AK ++ Sbjct: 1220 SWQPDEIEFVQKIANQLGIALYQAELLLKEQHQRHVLSVRSQELTFNNQQLAKAKQEAET 1279 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +++AE+ N AKS FLA+MSHELRTPLNAILGFS++I + P E + I+RS Sbjct: 1280 AQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDPSTPNY---QLEQLEIINRS 1336 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+HLL LIN++L +S+IEAGR L + L ++ ML L+A++K +++ + Sbjct: 1337 GEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGLKLIFDRGLT 1396 Query: 358 LSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISI 405 + D +RQV++NLLSNA+KFT G V + + + ++ Sbjct: 1397 PPHYIRTDPGKLRQVLMNLLSNAIKFT-TSGHVQLCLESNTLDTPEGAGVPPLLDVRFTV 1455 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GIA E+ + F Q +S +G GLGL I++ + GG S +G Sbjct: 1456 SDTGSGIAPEELKLLFEPFAQTETGRQSQ-EGTGLGLAISRQFVQIMGGNLTAHSIHNQG 1514 Query: 466 VEVIAILPNTRVLN 479 + + VL Sbjct: 1515 TTLTFNIVVETVLQ 1528 >gi|150007276|ref|YP_001302019.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935700|gb|ABR42397.1| two-component sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 791 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E K L E + A N AK+ FL+ MSH++RTP+NAI+G + + + + Sbjct: 261 IKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDIRTPINAIVGMTAIAR---LHMDDQ 317 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I S + LLNLINE+LD+S++E+ + L+E A + +++ +M+Q + Sbjct: 318 MRIADCLKKITISSKLLLNLINEVLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFE 377 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 K + + + D + ++Q +LN+L+NA+K+T G++ +TV Sbjct: 378 AKKQKFQIHVTKIKHECLIGDVQRIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGY 437 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++ DNG G+ + V F + QG GLG+ I++ I G L+ Sbjct: 438 GQFEITVTDNGIGMKPEFLEKVFEPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILV 497 Query: 459 RSKLREGVEVIAIL 472 S+ +G + Sbjct: 498 ESEYGKGSKFTMRF 511 >gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus SK60] gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus SK60] Length = 442 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 5/239 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + F+A++SHELRTPL I+G+ E + + P + + + Q + Sbjct: 200 QHLEQMRKDFVANVSHELRTPLTVIMGYVETLSEQ---PELDPRIARAFTQMMQQSQRMN 256 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 N+IN++L LSR+E I + ++ + Q+ + + I ID +L + Sbjct: 257 NIINDLLLLSRLENDEKPAEPKDIDIPKMLMQLFDDAQMYNKSYDHMIHLHIDSTL-HIL 315 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 E +R + NL++NA+K+T GG + ++ S+ DNG GI + I + Sbjct: 316 GYEDYLRSALSNLITNAMKYTPKGGEISISWHEYDAG-VCFSVTDNGIGIEQRHIQRLTE 374 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + G GLGL I + ++ H I S + +G P + + Sbjct: 375 RFYRVDTGRSRETGGTGLGLAIVKHVLYQHHATLDITSTVGKGSTFTVTFPKSASIPTQ 433 >gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 375 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + + +K AE N AK+ F+ +MSHELRTPLN+++GFS+++ GPLN Sbjct: 130 QKELEITLLKAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPLNT-KQ 188 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +Y+ +I SG++LL +IN +LD+SR+EAG L + + ++ + + L A K Sbjct: 189 SKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYENVDIASLIGDVRMSLLSPASVKR 248 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I + KIDPS+ +V AD +RQ++ NL+SNA+KFT G+V ++ + + D Sbjct: 249 ITVELKIDPSVGNVRADITKLRQILYNLVSNAIKFTPAKGKVVISAC-KKEGVLEVKVSD 307 Query: 408 NGPGIAEGEIPTVLTSFGQGSIA-------IKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 G G+++ + F Q + I ++ + HGG+ + S Sbjct: 308 TGIGLSKDSHEKIFMPFTQADSSAARGYGGAGLGLY-------IVRNFVDLHGGKIWVDS 360 Query: 461 KLREGVEVIAILPNT 475 ++ +G LP Sbjct: 361 EVGKGSIFTFTLPAE 375 >gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 611 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 375 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 432 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 491 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 492 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 550 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 603 >gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010] gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010] Length = 896 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 5/255 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I++ + + + + AE N AKS FL+SMSHELRTPLN ILGFS++I +T L Sbjct: 495 RDISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQLILSDTEHTL 554 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE + I I SG+HLL+LIN++L+LS I++GR + S+ + + + EC +LQ Sbjct: 555 -NEKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEECQPLLQAL 613 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQ 401 A+++NI I + D + + V AD ++QV + L+SNA+K+ GG V V+ T Sbjct: 614 AKQQNINIDFQ-DGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSASVQTHNNSL 672 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++I D G GI++ V T+F + + +G G+GL +++ ++ GGQ S Sbjct: 673 KLTITDTGKGISKDRQAQVFTAFERLGQ--ERHVEGAGIGLSVSKRLIEAMGGQIDFAST 730 Query: 462 LREGVEVIAILPNTR 476 +G LP ++ Sbjct: 731 EGQGTSFWIELPLSK 745 >gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1088 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 96/423 (22%), Positives = 163/423 (38%), Gaps = 33/423 (7%) Query: 67 TQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL 126 T + +W + L + + + L+ +GL L Sbjct: 329 TGLVLIALWVFVILFDRRVFVPVLVRSRRVFESEQ-----LSRTLIDTAPVGLG---LIA 380 Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 ++ G + ++A ++ + + + P L I ++ Sbjct: 381 IDTGEPLLRSPVMAETAKRVMVDAPT----LSAELVRRHAQQPQTGVLRYDRIFALRD-- 434 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 G Y V + EK+ L E ++ AE N Sbjct: 435 ----GGQIDLAVSSARARYRGTDVLVTAFTDVTEKNQLAHE-------LRNAKQAAESAN 483 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AKS F+A+MSHE+RTPLNAILG E++ L T+ + + + I S LL +I+ Sbjct: 484 AAKSAFVAAMSHEIRTPLNAILGNLELLSLATL----DAEQRNRLSTIRTSSDGLLAIIS 539 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADE 365 +ILD S+IEAG +++ + M A+ K + ++ + D S S+ +D Sbjct: 540 DILDFSKIEAGEMAFERIDFDCVELTGRALAMFAPGARAKGLRLYGQFDVDSALSMNSDP 599 Query: 366 KGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLT 422 + Q+I NLLSNAVKFT+ G + + + + S++D G G+ + + + Sbjct: 600 VRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDGATLLLMSVEDTGIGMTPEQQERLFS 659 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 +F QG +I G GLGL + + + GG S G LP P Sbjct: 660 AFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIHAESTPNVGSRFTVRLPTGSPTIARP 719 Query: 483 EDN 485 + Sbjct: 720 DPA 722 >gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 614 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 148/283 (52%), Gaps = 5/283 (1%) Query: 198 SFFTYITYHLFKSNVKILSCQAEK--DDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 T I L + L+ A + + EL + A +AKSRFLAS Sbjct: 329 GEVTGIVRSLLDVTERNLAAVAARKVEQYALELRSKNEQLARALEGARAATVAKSRFLAS 388 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTPLN I+GFSE++ +G L+ E E +GDI S +HLL LIN+ILDLS++E Sbjct: 389 VSHELRTPLNGIIGFSELLYDAKLGHLSGEQI-EVMGDILTSARHLLQLINDILDLSKVE 447 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 AGR E L +V E +++ A+ KN+ + ++ L + D RQV+ N Sbjct: 448 AGRMEFRPERSRLQPLVFEVRDVIRPLAERKNLVLATEVPEDLVA-HLDPGRFRQVLYNY 506 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNAVKFT GG V V + + ++D G GIA EIP + F Q + K A+ Sbjct: 507 LSNAVKFTPAGGSVTVRIARERQLWFQLEVEDTGIGIAAEEIPRLFQEFSQLPNSRK-AD 565 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 QG GLGL + + I+ GG +RS+L G A+LP L Sbjct: 566 QGTGLGLALTRHIVEAQGGSVTVRSELGRGSVFSALLPLDSAL 608 >gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 1149 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 3/268 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 439 LEQTNEQLSERTEALDRKNDELVQAQEELQARADELQRSSKYKSEFLANMSHELRTPLNS 498 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L++E K + I+ +G LLNLIN+ILD++++EAG+ E+ + Sbjct: 499 SLILAKLLAENAEGNLSDEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPEST 557 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 + +V M + A K + + + +++ D + + Q++ NLLSNA+KFT Sbjct: 558 QVERLVEGLRGMFEPLAGHKGLAFEVTAEAQVPATLFTDRQRLEQILKNLLSNAIKFTER 617 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V + +G+ G G +++D G GIA + + +F Q G GLGL I+ Sbjct: 618 -GKVSLNIGYQPGTGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 676 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP 473 + + GGQ + S +G ILP Sbjct: 677 RDLAHLLGGQINVDSSPGQGSVFSLILP 704 >gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] Length = 1111 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + + Sbjct: 315 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + D + + + + +S + + +++ ELE + + Sbjct: 375 KVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 431 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 490 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 550 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 551 LKVVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEHL 608 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 668 -----EEEIQTTQ 675 >gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 886 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 132/297 (44%), Gaps = 9/297 (3%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 A ++++ S + + ++ AE + AKS F Sbjct: 446 AVAAFLVLAGKADVYDDQDIRLASLLMDAVWRMVARTRDAGTLRAAKEAAETASRAKSEF 505 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN I G ++++ G KEY+ S + L L+ +ILDLS Sbjct: 506 LANMSHELRTPLNGIQGMAQLL----DGTDLTVEQKEYVDAALASCRRLTRLLGDILDLS 561 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 R+E+G+ L L D++ + +E + + + +W DE MRQ+ Sbjct: 562 RVESGKLGLVSEPFRLADLIASVSAAFEPACREAGVAWITDVARDVPETLWGDEGRMRQI 621 Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + NL NAVKFT G R+ V G ++ D G GIAE ++ V +F Q Sbjct: 622 LCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSVLFTVADTGVGIAEEDLERVFEAFHQV 681 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + QG GLGL I + ++ GG ++ S++ G E + LP R +PE Sbjct: 682 ERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESEVGRGTECVCALPLIRPAVPVPEP 738 >gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 570 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 7/239 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +KRAE + FLA ++HELRTPLN +LG +E++ ++ K+ + ++ S Sbjct: 201 AQKRAENSERSTRDFLAMINHELRTPLNGLLGAAELLADTSLSS----EQKKLLDTLNNS 256 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ L +IN++LD S+I AG EL + I+ +++ +AQEK + + ID + Sbjct: 257 GELLRAIINDLLDYSKISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQLLLTLVIDNT 316 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + + DE ++Q+ +NL++NA+KFT G + + W + +KD G GI EG+ Sbjct: 317 VPNCLLGDEDRIKQIFVNLINNAIKFTNR-GSIILNTTWCEDK-LIFQVKDTGIGITEGQ 374 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q I+ + +G GLGL I + + G+ + S +G ILP Sbjct: 375 QLKLFKPFSQVDISSQRIHEGTGLGLAICKQLCELMSGEIKLISIPEQGSTFTVILPLK 433 >gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 522 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + R +AEE + KS FLA+MSHE+RTPLNAI+GFS++I + Sbjct: 282 VTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDE 337 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y + + LLNL N+ILDLS +EAG ELS + L DI + + +++ Sbjct: 338 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELY-VKSV 396 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + D + + Q+++NL++NA+KFT+ G +H + Sbjct: 397 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSA-GEIHFGFQEKAD-MVQFY 454 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + T+ FG+ QG GLGL I + ++ GG+ +RSK + Sbjct: 455 VSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGK 510 Query: 465 GVEVIAILPNTR 476 G LP R Sbjct: 511 GTVFYFTLPVKR 522 >gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] Length = 571 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + + D+ Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLVLVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G+ + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 730 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ + Sbjct: 347 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNAAD 404 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 405 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 461 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 462 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 519 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 520 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 575 Query: 465 GVEVIAILP 473 G +P Sbjct: 576 GSTFRFTIP 584 >gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 553 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 171/354 (48%), Gaps = 3/354 (0%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 L LV E L + + + A L V + P +A + A + Sbjct: 175 LALVTLHGRGGEVLGLEHADAARAHVPEDAWLGQGLFDRVLVPDRPAFLAALSTAAHGLS 234 Query: 184 VLDISLAGMLA-TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + L + + I +++ R A Sbjct: 235 ATESVCEVRLRCEGEGEAPDFVWMELRCVPAGEDRARAHWRDIHAVKIQLEEDHRARTEA 294 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E NLAKSRFLA+MSHELRTPLN ILGFSE++ +T ++ ++Y IH SGQHLL Sbjct: 295 ERANLAKSRFLAAMSHELRTPLNTILGFSELLATDTEQRIDARRKEDYARIIHESGQHLL 354 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++N+ILDLSR+EAG YELS I + +V C+ M+ L A +NI++ + L Sbjct: 355 GVVNDILDLSRVEAGAYELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTTLLPARLPRPM 414 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD++ +RQ+ LNLLSNAVKF+ GG V V V +S++D+G G++ E+ + Sbjct: 415 ADQRAVRQMTLNLLSNAVKFSEHGGLVEVNVSAQ-NGVVSLSVRDSGAGMSPAEVERLGE 473 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q A + A +G GLGL + ++++ H G F + S + G V LP R Sbjct: 474 PFFQAGDAERRA-RGSGLGLAVVRALVKLHDGAFEVTSSVGGGTTVTISLPVRR 526 >gi|218281107|ref|ZP_03487650.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989] gi|218217660|gb|EEC91198.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989] Length = 806 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 141/258 (54%), Gaps = 12/258 (4%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + DDLI + + K + +AE + AK+ FL +MSH++RTP+N ILG++++++ + Sbjct: 403 DIDDLIQKERLQKEQLRKAYIQAENASKAKTNFLNNMSHDIRTPMNVILGYNQLMKKQ-- 460 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L + +Y I +SG LL++IN++L+++RIE+G+ L ES+ S++D+V E + Sbjct: 461 --LTDPVLVDYQKKIEQSGNLLLSIINDVLNMARIESGKSVLVESSESIVDMVEEVSNVF 518 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVG 394 A+EK I K+D V D ++++++NL+ NA+K+T GG V V Sbjct: 519 GAMAKEKEIVFDTKMDIKHKQVLCDCTKVKEILVNLIGNAIKYTPNGGHVTVDIKEFECS 578 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 I I D G G++E IPT+ +F + + + G GLG+PI + ++ GG Sbjct: 579 KEGYGTYQIQIIDTGIGMSESFIPTLFDAFTREATSD---IIGTGLGMPIVKKLVDMMGG 635 Query: 455 QFLIRSKLREGVEVIAIL 472 + S L +G + Sbjct: 636 TIDVESVLGKGSTFTITI 653 >gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 807 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 28/340 (8%) Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 +S + + G L LS +I + ++ Sbjct: 351 GARFFLFSLVSTMLLFSLDILTEFAKKGTAYLGQYGFLVFGLSQALFIADRMIQNF---- 406 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 K + ++ A E KS FL++MSHE+RTP+N ILG +++ Sbjct: 407 --------------KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMTQMFG 452 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ + KEY+ I SG++LL L+N+ILDL+++EAG++EL I L + + Sbjct: 453 QTSL----TDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDM 508 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + + + + + + + L + D++ Q+I NLL NA+KFT G + + V Sbjct: 509 VQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTET-GTISLIVW 567 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IKD G GI ++ + F Q + G GLGL I + I+ Sbjct: 568 SDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVE 627 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G+ + S+L +G +P + IP + Q Sbjct: 628 EMSGKISVLSELGKGSVFHVEIPVSVSNEEIPTSDSLPNQ 667 >gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 812 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 28/340 (8%) Query: 156 NFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 +S + + G L LS +I + ++ Sbjct: 356 GARFFLFSLVSTMLLFSLDILTEFAKKGTAYLGQYGFLVFGLSQALFIADRMIQNF---- 411 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 K + ++ A E KS FL++MSHE+RTP+N ILG +++ Sbjct: 412 --------------KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMTQMFG 457 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++ + KEY+ I SG++LL L+N+ILDL+++EAG++EL I L + + Sbjct: 458 QTSL----TDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDM 513 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + + + + + + + L + D++ Q+I NLL NA+KFT G + + V Sbjct: 514 VQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTET-GTISLIVW 572 Query: 395 WTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + IKD G GI ++ + F Q + G GLGL I + I+ Sbjct: 573 SDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVE 632 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G+ + S+L +G +P + IP + Q Sbjct: 633 EMSGKISVLSELGKGSVFHVEIPVSVSNEEIPTSDSLPNQ 672 >gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] Length = 1142 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 176/349 (50%), Gaps = 18/349 (5%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 +K L A LS M+ +S +P A+ +M + I + + + Sbjct: 583 FKFTLLFSANMGIFLSLIMVASVKTMSLYPDQAAIIETFSWTMSAISIIVLMIATWSYLL 642 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAE---LEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + Q + LI E E +++++A+ N+AKSR+L + Sbjct: 643 ------SMEGRQLAQDESQRQTQLLINEIKAHERTDLELQQSKEKADAANIAKSRYLERI 696 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+++G+++++E PL +E I + S +HL +LI ++D+S+IEA Sbjct: 697 SHELRTPLNSVMGYAQLLEGADDIPLP---RRESIKVMRSSSEHLTDLIEGLVDISKIEA 753 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 GR +L + + ++ ++ + + M Q++AQ KNI + L V+AD K +RQV++NL Sbjct: 754 GRLDLHRNKVDMLAMIEQLMYMFQIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINL 813 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +SNA+KFT G V V + + + Y S+ D G GI + +I + +F + + + Sbjct: 814 ISNAIKFTPE-GSVSVDLKYR-NQVAYFSVTDTGVGIEDEDISRISEAFVRIANPMH-QV 870 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIP 482 G GLGL I Q+++ GG I S+ EG LP++R + P Sbjct: 871 AGSGLGLAITQALVHRMGGDLSIESRFGEGSTFTVSLMLPSSREVTHQP 919 >gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] Length = 465 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ + F+A++SHELRTP+ +I GFSE + + ET ++ +H Sbjct: 235 ELKKLEQIRKDFVANVSHELRTPVTSIKGFSETLLDGAY--KDTETLLSFLEIMHTESNR 292 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LIN++LDLS++E + ++ ++ +++ M+Q + EK+I++ +I P + Sbjct: 293 LEMLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQP--VT 350 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV++NLL NAV +++ + + + I ++D G GI EI + Sbjct: 351 VLGDANRLIQVMMNLLINAVTYSSNYTEITIRLFR-KDNRAIIQVEDQGIGIESSEIGRL 409 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G + S + G LP Sbjct: 410 FERFYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLPLA 464 >gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] Length = 950 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 452 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGID----S 507 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ + +IV + +K + Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLT 567 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+ + V D ++QVI NLL+NA+KFT G + + W + ++D Sbjct: 568 LYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-WVAEGYLAFRVRDT 625 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+P + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 626 GVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685 Query: 469 IAILPNTR 476 I +P + Sbjct: 686 IVRIPIYK 693 >gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1228 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + K L+ +D + + + ++ ++ AE AKS+FLA+MS Sbjct: 795 GEYIWLNWVARPMADKGLTYAIARD--VTDRKKYEAELIAAKETAESATRAKSQFLANMS 852 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLN ILG ++++ + +Y+G+ ++ + L L+++ILD+SRIEA Sbjct: 853 HEVRTPLNGILGMLQLMQQTRLDH----EQDDYVGNAIQASRRLTRLLSDILDISRIEAE 908 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + + +L + + + A + I+ ++ P + + + D ++QVI NL+ Sbjct: 909 KLIIMAEPFNLHESLNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLV 968 Query: 377 SNAVKFTAIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NA+KFT+ G V V S SIKD G GI + + + F Q + Sbjct: 969 GNALKFTSS-GTVTVEATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSW 1027 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 QG GLGL I + ++A GG I S++ G V + Sbjct: 1028 NRQYQGAGLGLSITKRLVALMGGTLCIESRVGVGTTVHLSI 1068 >gi|239625178|ref|ZP_04668209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519408|gb|EEQ59274.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1110 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 137/303 (45%), Gaps = 17/303 (5%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLAS 255 + I + +EK + E AK +E N AKS FL+ Sbjct: 675 LVAMEQNRPKTIIIAIRNISSEKQKELEHREEEKKAKQALEEAYAAVNRANQAKSEFLSR 734 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSH++RTP+NAILG + V E + K+ + IH SG HLL LIN +LD+S+IE Sbjct: 735 MSHDIRTPMNAILGMAAVAEHNL---DKGDKVKDCLSKIHTSGDHLLELINAVLDMSKIE 791 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILN 374 +G L+E+ SL ++ E ++Q K + + +V+ D +++++LN Sbjct: 792 SGSICLAENPFSLSCMMDEVAQIIQTDIGRKGQHLSVHMQGLGHDAVYGDMVRVKEILLN 851 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 LLSNAVK+T G + V++ ++D+G G++ + T F + Sbjct: 852 LLSNAVKYTPENGTIQVSLEEKLSSQSGVGCFEFIVEDDGIGMSPEFQEKMFTPFERAED 911 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN-----FIPED 484 S QG GLGLPI ++++ G + S L +G + + V PE Sbjct: 912 ERVSQIQGTGLGLPITRNLVQMMNGTIGVESHLNKGTRFVVTIYLKLVDQDKTRRQEPEA 971 Query: 485 NHE 487 E Sbjct: 972 ISE 974 >gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1504 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 9/269 (3%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + L E + L R+ AE N K FLA +SHELR+PLN ILG++++++ Sbjct: 1110 QKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSPLNPILGWTKLLQTRKFN 1169 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E + I R+ + LI+++LD+++I G+ + + ++L+ ++ I ++ Sbjct: 1170 EIKTA---EALATIERNAKLQCQLIDDLLDVAKILRGKLSIDTTPVNLVFVIESAIDTVR 1226 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K+I + + P++ V D ++Q++ NLLSNA+KFT GGRV + + Sbjct: 1227 TAAVSKSILLHPVL-PNIGQVAGDSTRLQQIVWNLLSNAIKFTPNGGRVDIRIERVKD-S 1284 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I + D G GI +P + SF Q ++I G+GLGL I ++++ HGG S Sbjct: 1285 AHIIVSDTGKGINPAFLPYIFESFRQEDVSITRKYGGLGLGLAIVRNLVEAHGGTISADS 1344 Query: 461 K-LREGVEVIAILPNTRVLNFIPEDNHES 488 G LP LN PE N + Sbjct: 1345 PGEGLGATFTVRLPL---LNLAPESNQTN 1370 >gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 547 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLIES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + + ++ + Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QVI N ++NA+KFT G++ + + Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIMLEYRHKAESNEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA ++ V F + S +G GLGL I +SI+ + GG S++ Sbjct: 463 AVTDTGMGIAPDKVDQVFDRFVKL----NSFSKGTGLGLSICRSIIKHLGGTIGAESEIG 518 Query: 464 EGVEVIAILPNT 475 G P Sbjct: 519 VGSRFWFTHPLR 530 >gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041] gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041] Length = 617 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 10/238 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + ++ I ++ Sbjct: 371 QKEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDQDIAPQ--FLTVIQNETNRMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK-------NIEIFQKID 355 +IN++L LSR+++G +L+ +++ ++ + + ++ I + Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKKYTIERYFT 488 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QVI N+++NA+K++ GG + + T +SI D G GI Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRK 547 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 548 DLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGSTFYISLP 605 >gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1287 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 27/287 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ ++ E+ +LI L+ E N K FLA +SHELR+P Sbjct: 855 QKGMMQAVCDQIAIAMERMELINSLQRQTEQLTEA-------NRMKDEFLAILSHELRSP 907 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILG++++++ + + I R+ + LI ++LD+SR+ G+ L+ Sbjct: 908 LNAILGWAQLLQARRLSEAQTAKG---LETIERNAKAQTQLIEDLLDISRMIRGKLRLNV 964 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLS-SVWADEKGMRQVILNLLSN 378 +LI I+ I + L AQ K I++ ++ +L V D + ++QVI NLL+N Sbjct: 965 RTCNLIPIIETTIENINLAAQAKEIDLTFFLENPATENLPFQVSGDPERLQQVIWNLLTN 1024 Query: 379 AVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 A+KFT GG+V V + G I + D G GI +P V F Q Sbjct: 1025 AIKFTPSGGKVEVRLTKNPGCEQNELITNSYAQIQVIDTGIGINSSFLPYVFDRFRQADS 1084 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR--EGVEVIAILPN 474 +I + G+GLGL I + ++ HGG + S +G LP Sbjct: 1085 SITRSHGGLGLGLAIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1130 >gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 854 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 5/232 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + KS ++++SHELRTPL++I GF+E++ ++ +Y+ IH + L N Sbjct: 612 EMDRLKSELVSTVSHELRTPLSSIYGFTELMLNR---KMDLSKQDKYLKTIHSETERLSN 668 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N+ LD+ R+EA + ++L ++ E I D + A Sbjct: 669 LVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDAC-PLIEA 727 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE+ M+Q++ NLL+NAVK++ GG + V V +++D G GI + + + Sbjct: 728 DEEKMKQLMNNLLNNAVKYSPFGGNIEV-VLEADHHHVQFAVRDEGIGIPKSALAKLFDK 786 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + + G GLGL I + I+ H G+ + S ++G LP + Sbjct: 787 FYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLPQS 838 >gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 975 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 20/377 (5%) Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS-------ALSNFMLPYAVF 164 V + + + + A ++ + + AL+ + Sbjct: 185 VLAALSASPLDVPFALLYLRTKEDGPVTFAGAVGVVWEAAASPWPLEQALAGETVRVDDV 244 Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 P+ + + S ++ I+ +G A I+ ++ + + E Sbjct: 245 ARHLPLAGGPWGEPVTSALLMPIASSGQGAPLGVLVVGIS--PNRALDEGYTSFYELLAS 302 Query: 225 IAELEVAKSLS-DETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSE-VIELETM 279 L + + + +E RKRAE E + AK+ F +++SHE RTPL +LG E V+ T+ Sbjct: 303 QVSLALRNAQAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTL 362 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E + +HR+ LL L+N +LD SR+EAGR E S + L + Sbjct: 363 ----PEAAARELDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSF 418 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A+ + + P + + D + +++LNLLSNA KFT G + V + +G+ Sbjct: 419 RSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQ-GTITVRLRARTGQ 477 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ I D G GI ++P + F + A +G G+GL + Q + GG+ + Sbjct: 478 -AWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVE 536 Query: 460 SKLREGVEVIAILPNTR 476 S +G +LP R Sbjct: 537 SVEGQGSCFTVVLPEGR 553 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 16/334 (4%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 +L + + L F L + V + + + + A + Sbjct: 657 LILTDVMMPRLDGFGLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFS 716 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA-EEENLAKSRFLASMSHELRT 262 L L + +S E R A + + FL+ SHEL+T Sbjct: 717 ARELVARVCSTLELSRMRR---------ESSLQEARAEALKRAVQVRDEFLSIASHELKT 767 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PL A E+IE +GP + + + R Q L L+ +LD+S++ GR L Sbjct: 768 PLMAFRLQLELIERS-LGPESRLSLASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLH 826 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + L ++V E + L+ + + +++ L + D +V++NLL NA+K+ Sbjct: 827 LEEVDLAEVVGETVEQLRGSLERAGCSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKY 885 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + V W +++ D G GI+ + + F + G+GLGL Sbjct: 886 -GEGKPLRVRA-WKEQGISRLTVADQGMGISPEDQARIFERFERAVPG--RQYGGLGLGL 941 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 IA+ ++ HGG + S +G +P R Sbjct: 942 WIARQVVEAHGGHIQVDSTPGQGTTFTVQIPQNR 975 >gi|237746436|ref|ZP_04576916.1| response regulator receiver domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377787|gb|EEO27878.1| response regulator receiver domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 994 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 9/273 (3%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + V +L + + + AE E AE + AKS FL++MSH++RTP+ Sbjct: 434 KRIDGVPVLLLFTRQDVTETKAEQLRNHIALKEAFLAAENASRAKSDFLSNMSHDIRTPM 493 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI+G + + + P ++ +G I S +HLL LIN+ILD+SRIE+G+ L E Sbjct: 494 NAIMGMTAIAAMHVNEP---AYIQDCLGKITLSSRHLLKLINDILDMSRIESGKVFLVEE 550 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 L +V + + + + KN ++ +I + V D ++QV +N++ NAVKFT Sbjct: 551 TFVLPTMVEALLAISLPQIRAKNQQLKVQIANIVHEEVVGDPLRLQQVCINIMGNAVKFT 610 Query: 384 AIGGRVHVTVGWTS-----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 GG + + + D+G G+ + + + F + + +G Sbjct: 611 PEGGHIALQITEKPCSLHGFGCYEFVFGDDGIGMEKEFLDRIFEPFVRADNSRVRKAEGT 670 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLG+ IA++I+ G + S+ +G Sbjct: 671 GLGMSIARNIVRMMNGDIEVWSEPGKGSRFTVT 703 >gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 878 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 8/338 (2%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + +A+ + A+ P+ L + V I + + + + L Sbjct: 409 VVLSNAMRSDPRGGAMPPGHPPLSRYLGVPIMDRGEV--IGMFAIANAPQDYPDELVDWL 466 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 K + L E + + R +AE+ N AK+ FL+SMSHELRTPLNAI Sbjct: 467 -KPFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAI 525 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LGF+++++ +E + I RSG+HLL LINE+LDL+RIE+GR ++S + Sbjct: 526 LGFAQLLQNGR--QPLSERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPML 583 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 D++ + ++ A+++ I + D ++Q+++NLL NA+K+ G Sbjct: 584 AHDVIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPG 643 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V V G I + D G GI + + F + A + +G G+GL + + Sbjct: 644 GAVEVRCEAV-GGRCRIGVVDTGIGIPASRLGELFQPFNRL-GAESGSIEGTGVGLALTR 701 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 ++ G+ + S+ EG LP + ++ Sbjct: 702 KLVDLMHGELGVHSREGEGSAFWFELPLCEQAPAVRDE 739 >gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 1238 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 6/268 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + ++ + A + ++ E+E AE N AKS FLA MSHE+RTP+ Sbjct: 518 RVRHQGSDEVATLIAGFNTMLDEIERRDVELQAAIAAAEAANSAKSEFLARMSHEIRTPM 577 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N +LG +E+++ + + ++ ++RSGQ LL +I++ILD S+IEAG+ L Sbjct: 578 NGVLGMTELLQRTRLTA----KQRSFVDTVYRSGQTLLTIIDDILDFSKIEAGKLMLERI 633 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 +L ++ + + +L+ A K + + + + V D +RQ++ NL+ NA+KFT Sbjct: 634 EFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRLRQILTNLVGNAIKFT 693 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G+V + V ++ +I D+G GIA + F Q + G GLGL Sbjct: 694 ER-GQVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQADSSTARKYGGTGLGLV 752 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I++ + GG + S G Sbjct: 753 ISRQLAEMMGGTLTVESAPGRGSVFTVT 780 >gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] Length = 534 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ + Sbjct: 289 IDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DDK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + I ++ Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKED 404 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYI 403 + + P+ ++ D+K + QVI N ++NA+KFT G++ + Sbjct: 405 KPVPVLLAPTLPNF-YIYTDKKRLMQVITNFINNALKFTNK-GQILLEYHLKEDTCEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI ++ V F + S +G GLGL I +SI+ + GG + S++ Sbjct: 463 SVADTGMGIEPDKVDRVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518 Query: 464 EGVEVIAILPNTRV 477 G P V Sbjct: 519 TGSRFWFTHPYQSV 532 >gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 646 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 170/402 (42%), Gaps = 35/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + +LV G L E L + T+L + +++ + F FL+ Sbjct: 22 KRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGTVLGVIELASFTRFTEIQRDFLN 81 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY--HLFKSNVKILSCQAEKDDL 224 ++A S I ++ L K+ + EK +L Sbjct: 82 QIAEMIATSVNTISVNTKTEVLLKQSQELTEQLRERSEELEQRQKALQASNAELEEKAEL 141 Query: 225 IAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEV 273 +A+ EV + +E R+ EE KS FLA+MSHELRTPLN++L +++ Sbjct: 142 LAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKL 201 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + G L+ E+ IH +G LL LIN+ILDLS++EAG+ ++S + I+L+ +V Sbjct: 202 LADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVD 260 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV- 391 + EK ++ ++ P L ++ DE+ + QV+ NLLSNAVKFT G V Sbjct: 261 YVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVI 320 Query: 392 -------------------TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 ++ S+ D G GIA ++ + +F Q Sbjct: 321 RPAGQDVPQAIREQLLEAGSLADPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTS 380 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ I GG+ +S+ G LP Sbjct: 381 RKYGGTGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPL 422 >gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23] gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23] gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99] Length = 591 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + +++ + + A EKNI + + + + D Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+I+NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 921 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 94/322 (29%), Positives = 150/322 (46%), Gaps = 23/322 (7%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + L Q + + + L+ + + T + ++ + Q Sbjct: 483 GIWSASQTLRFQLLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRLRRLTAWQ------- 535 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 L+ ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ Sbjct: 536 --------LAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI---- 583 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 T + Y I R+G HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE Sbjct: 584 TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQE 643 Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + +I + D +RQ++LNLL+NA+KFT G V + + +G Sbjct: 644 RGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRF 702 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D GPGI + + F QG A S G GLGL I Q + GG + S+L Sbjct: 703 EVADTGPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRL 762 Query: 463 REGVEVIAILPNTRVLNFIPED 484 EG + LP V + P D Sbjct: 763 GEGTRFVVDLPLHWVASNAPLD 784 >gi|295107410|emb|CBL04953.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 727 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 12/290 (4%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + + S L+ + K+ E A+ + AKS+FL++M Sbjct: 167 VGWAVVLMAGVAVSLAVYLALMYRNRK---REDRLKADLREALSLAQIASAAKSQFLSNM 223 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SH++RTP+NAI+G + + + E + I S +HLL+LIN++LD+ +IE+ Sbjct: 224 SHDIRTPMNAIVGLTTIAKAHL---HEPERMAACLDRIQSSSRHLLSLINDVLDMGKIES 280 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNL 375 G+ L+E S D V I + Q +A+ KN+ + + +V D + Q ++NL Sbjct: 281 GKIVLNEDRFSFPDFVNGVIAIAQPQAKAKNLSLDITLGTIQQENVVGDAMRLNQALINL 340 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +SNAVK+T GG + +++ ++D G G++ + + F + Sbjct: 341 VSNAVKYTPDGGSIRLSLSERPSHRPGCHDYRFVVQDTGLGMSPEFLERLFDPFEREESD 400 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +G GLG+ I ++++ GG + S EG I +P + Sbjct: 401 ATKRIEGTGLGMAITKNVVDMMGGSIEVESTPGEGSTFIMTVPLQPLDEE 450 >gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603] gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603] Length = 586 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 350 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 407 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 408 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 466 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 467 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 526 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 578 >gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 702 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 138/266 (51%), Gaps = 12/266 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + + RAE+ KS FLA+MSHE+RTP+NAILGFSE++ E +E K Sbjct: 194 RREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELLANEA----QSEQEKR 249 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I SG+ LL +IN+ILDLS+IEAG ++S + D+VR M +A E+ +E Sbjct: 250 HAETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFVQQMFARQAIERGLE 309 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY------ 402 + +I PS+ S+ D +RQ+++N++ N++KFT GG V V + G Sbjct: 310 LHAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGG-VTVRLHGERGTEHRSRMLLT 368 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + ++D G GI V F Q + KS +G GLGL I + + GG+ L+ S+ Sbjct: 369 VEVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLSDLMGGRILLDSQP 428 Query: 463 REGVEVIAILPNTRVLNFIPEDNHES 488 G P+ + +PE + Sbjct: 429 GRGTLFRFEFPHVEISARLPESQTKE 454 >gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 800 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 9/274 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ L +LE L + AE N AKS FL+ MSH++RTP+NAI+G + + Sbjct: 261 TEQRVLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHDIRTPMNAIMGMLSIAKESW 320 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 P + ++ + + S + LL LIN+ILD+S+IE+G+ L + A R M Sbjct: 321 DDP---DRVRDCLDKVENSARFLLALINDILDMSKIESGKAILKKKAFDFAAFTRNLAAM 377 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT- 396 +A++K + + SL+ + DE + Q+++NLL NA+KFT GG V ++V Sbjct: 378 FYGQAEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNAIKFTEPGGSVLLSVQEDK 437 Query: 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G G+ + + + F Q +S + G GLGL IA+ Sbjct: 438 RSNKASELVFTVTDTGIGMEKSFLKKIFEPFEQ-DSQQRSNQGGSGLGLSIAEKYARMMN 496 Query: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 G + S +G +A + P E Sbjct: 497 GGIEVDSTPGKGSTFVARIWLENDEAQAPVSLEE 530 >gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C] gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C] Length = 1828 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 32/296 (10%) Query: 209 KSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHEL 260 ++ L +AE EV + +E R+ EE KS FLA+MSHEL Sbjct: 1303 QAANAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHEL 1362 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPLN++L ++++ + E+ IH +G LL LIN+ILDLS++EAG+ + Sbjct: 1363 RTPLNSLLILAKLLADNA-DENLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMD 1421 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 +S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSNA Sbjct: 1422 VSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNA 1481 Query: 380 VKFTAIGGRVHV---------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 VKFT G V + ++ S+ D G GIA ++ Sbjct: 1482 VKFT-DNGAVELVIRPAGADVPTAIREQLLEAGSLRDADADLIAFSVTDTGIGIAASKML 1540 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1541 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1596 >gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 722 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 134/295 (45%), Gaps = 20/295 (6%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 LF L A+ A + + R+ AE + AKS FLA++SHELRTPLN Sbjct: 434 LFDIIAAPLPTPADALPRAALFARDATAMIQARQAAEAASQAKSDFLANVSHELRTPLNG 493 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G +V+ + P ++ + DI ++ LL+L+ +LDLSR+E+ + L Sbjct: 494 IIGMGQVLAASNLDP----DQRQCLADIEQAAGALLHLVENLLDLSRLESEKLALDNQPF 549 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385 L I++ L AQEK +E+ + + + + D +RQ +LNL NAVKFT Sbjct: 550 VLSSILQGVEATLAPLAQEKGLELSAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPA 609 Query: 386 GGRVHVTV---------GWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 G V + G + +++D G GIA+ + + F Q + Sbjct: 610 -GSVTIEAYCAKPCVLAGPEGETVEVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRF 668 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G GLGL I++ ++ GG+ + S+ +G L V PED + Sbjct: 669 GGTGLGLAISRGLIEAMGGELAVDSEHGQGSVFRFCLRFGLV----PEDEATAPD 719 >gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] Length = 630 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E + +AE + AKS F+A++SH+ RTP+N ILG +++ + Sbjct: 234 ITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILGIAQIFNMHEHTKKQE 293 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I D+ S LL L+ +ILD +R+E G+ EL S +L +V + + Q Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K I+I D SL S+ ++ +R++ LNL+ NAVKFT G++ VTV + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI + ++ T+ F + + S +G+GLGL I + ++ N GG+ + S Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 468 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG +P P + E+ Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495 >gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 753 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 130/242 (53%), Gaps = 10/242 (4%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N ++G ++++E + +E + Y I S + LL LIN+ILDL Sbjct: 380 FLANMSHEIRTPMNGVMGMAQLLEETEL----DEDQRLYTDTILSSARTLLALINDILDL 435 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+++AG+ EL+ + + + + +++++A+ K +E+ + L + D+ ++Q Sbjct: 436 SKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNRIKQ 495 Query: 371 VILNLLSNAVKFTAIGGR-VHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +++NL+ NAVKFT G + + S+KD G GIAE ++ + F Q Sbjct: 496 ILINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERFTQA 555 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 AI G GLGL I++ ++ G+ + SK +G +LP +V E+ E Sbjct: 556 DAAINRRYGGSGLGLSISRHLVNLMEGEISVASKPGQGSCFTVVLPLEQVEPA--EEVVE 613 Query: 488 ST 489 S Sbjct: 614 SP 615 >gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13] gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] Length = 571 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVEDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + + D+ Sbjct: 406 ILCLYEIEQKRSTI-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G+ + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] Length = 867 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS++++ + ++ Sbjct: 622 IQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSS 679 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E ++++ I+ + LL L+N+ILDLSRIE+G + S+ +L I+++ Q + Sbjct: 680 EEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDS-QRLSM 738 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +E+ + D ++QV+ NL++NA KFT G + + I Sbjct: 739 PQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTK-GYILLGYRVEDSGHTVI 797 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI++ + + F + QG GLGL I Q+I+ G + SKL Sbjct: 798 FVEDTGSGISDENLGHIFERFYKADN----FTQGAGLGLSICQTIVERLNGTITVTSKLG 853 Query: 464 EGVEVIAIL 472 +G + Sbjct: 854 KGTHFEVRI 862 >gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6] Length = 545 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHELRTPLNAILG+++++++ + + +E++ I +G+HL +LI+ + Sbjct: 308 KSMFLANMSHELRTPLNAILGYAQLLKMGV-ANNDPVSQQEFLDSILGAGRHLTSLISNV 366 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD S+IE G+ EL + + ++RE ++ ++++ E+ I+P + ++ D + Sbjct: 367 LDFSKIEQGKIELYMGPVDVEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKL 426 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 RQ+++NLLSNA KFT G + + V + ++ D G GI+ + + F Q Sbjct: 427 RQILVNLLSNAAKFTEA-GTISLHVCAAAE-MIEFAVIDTGIGISAEHLGKLFQPFSQVD 484 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ G GLGL +++ + GG+ + S + +G +LP +L Sbjct: 485 SSVTRRVDGTGLGLALSRQLCHAMGGEISVESAVGQGSTFRVVLPAGDLLEQP 537 >gi|289664296|ref|ZP_06485877.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1191 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + +D +L ++ D ++Q++LNLL NA+KFT G VH+ V +G Sbjct: 905 QLAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTER-GSVHLRVAALPEHTQQGIR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSA 1049 >gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] Length = 497 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 7/244 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +E ++A + KS FLA+MSHE+RTPLNAI+GFS ++ L E E+ Sbjct: 258 EERLNEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESD-LTKEDIIEFT 316 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I ++ + L+ LI++ILDLS+IE+ E S ++SL ++ E ++ +E +E+ Sbjct: 317 SLIEKNSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMRE-GVELL 375 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + +V+ D + QVI NL++NA+KFT+ G + + + I ++D G G Sbjct: 376 LDLPGQEVTVYTDPARLSQVINNLVNNAIKFTSE-GNIRIGYRPAASGYVNIFVEDTGTG 434 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ + + F +G S +QG GLGL I ++I+ G+ + S +G Sbjct: 435 MSREVLEHIFDRFYKGD----SFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTIT 490 Query: 472 LPNT 475 LP Sbjct: 491 LPLK 494 >gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278] gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 787 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 34/293 (11%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTP 263 QAE + +A ++ +S +E ++ E KS FLA MSHE+RTP Sbjct: 355 QAELEQKLAYVQAIRSDLEEQKRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTP 414 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L+ ++G +++ G N+ K Y S LL +IN+ILD S++EAG+ + Sbjct: 415 LSGMVGMVDLLR----GTSLNDEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSEC 470 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 + +V + + +A+ + +++ P L + D +RQV+LNL+ NA+KF Sbjct: 471 IDFDVPSLVESAVSFMGEKARRRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKF 530 Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + V I + D+G G+++ + F Q +I G Sbjct: 531 TEQ-GAIEVHASHRELDDGAVDLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGS 589 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----------LPNTRVLNFI 481 GLGL I + + A GG + S+ G LP V+ + Sbjct: 590 GLGLAICKQLCAIMGGSIGVESEPGRGSRFWFEARCQRGEALALPAETVIEAV 642 >gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 785 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 12/271 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDLS+IEAG E ++L ++ R + + R Q Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQ 517 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D + QVI N L+NA KFT G + + Sbjct: 518 E-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VDNQCIRFY 574 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA ++ + F + S QG GLGL I + I+ GG+ S++ + Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGATSEVGK 630 Query: 465 GVEVIAILP-NTRVLNFIPEDNHESTQYKCY 494 G +P R + I T+Y + Sbjct: 631 GSTFFFTIPYKERSDDRIAFSEVSETKYISH 661 >gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 575 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 17/300 (5%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L +S ++S E L L+ + ++ AE+ + AK+ FLA+MSHE+RTPLN Sbjct: 158 LLQSLADLVSVAIENAYLYDALKTRAAELAIQKEAAEQASRAKTEFLANMSHEIRTPLNG 217 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G ++I+ + +E KEY+ S + L +L++ ILDLS IE+G++ L E+ Sbjct: 218 IFGMIQLIDNSNL----DEYQKEYLVAAKHSCKRLTSLLSHILDLSSIESGKFSLRENTF 273 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 SL DI + + + K + +D L V DE + Q++ NL NA+KFT Sbjct: 274 SLSDIKESVRELFAIESARKKLLFQFNLDLRLPSRVIGDEARVLQILFNLAGNAIKFT-E 332 Query: 386 GGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V + +I+D+G GI + + F Q A K QG GL Sbjct: 333 SGSVRIDACELPRHDPDACRVLFTIEDSGIGIPDQLQKEIFDPFVQAEGAYKRRFQGAGL 392 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT------RVLNFIPEDNHESTQYKCY 494 GL I + ++ GG + S EG LP + + P + + Q K + Sbjct: 393 GLAIVRKLVRLLGGTLAVDSVEGEGTTFYLSLPFRLPPSAGQSADAAPASDRDFPQTKGH 452 >gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 927 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 18/281 (6%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I + + + + +A+ N AKS FLA+MSHELRTPLN ILG +++IE Sbjct: 376 ERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESNI--- 432 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++ + I + SG HLL L+NEILD S+IE + EL+ ++ +DI+ Sbjct: 433 -KDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYLS 491 Query: 342 RAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 + K ++ + V D+ +RQ+I NL+SNAVKFT G + + T Sbjct: 492 VCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE-GSITLNFSHTLTGK 550 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + I IKD G GI E + + + Q + G GLGL I + + G Sbjct: 551 GKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYI 610 Query: 457 LIRSKLREGVEVIAILPNTRVLNF--------IPEDNHEST 489 + S +G +LP + +P + +ST Sbjct: 611 SVSSSEGKGSCFTLVLPLDITKSKQLKDNDALLPSEQSKST 651 >gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1182 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 150/331 (45%), Gaps = 23/331 (6%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 S L + + AL Q + + + L+ + + T + Sbjct: 730 SGLYTLEVQGRTVDGIWSASQALRFQVLPAWWLSPWGLSLLALLTVCLIAAATLLYRRRL 789 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ Q L+ ++ AE+ +LAK+RFLA++ HE+RTP+ +LG S Sbjct: 790 RRLTGWQ---------------LAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMS 834 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ ++ T + Y I R+G HLL L+N+ LDL+RIE+GR EL S+ + Sbjct: 835 ELLLKTSLDI----TQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQL 890 Query: 332 VRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 V E ++ AQE+ + +I + D +RQ++LNLL+NA+KFT G V Sbjct: 891 VAEVKALMAPLAQERGLRFSLEIGLLGDITASGDSTRIRQILLNLLNNAIKFTER-GVVG 949 Query: 391 VTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSI 448 + + +G + D GPGI + + F QG A S G GLGL I Q + Sbjct: 950 LKLTTLGSYQGLRFEVADTGPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQEL 1009 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GG + S+L G + LP V + Sbjct: 1010 AMAMGGHIEVISRLGAGTRFVVDLPLRWVAS 1040 >gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 1128 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + + Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + D + + + + +S + + +++ ELE + + Sbjct: 392 KVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 449 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 568 LKVVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEHL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 685 -----EEEIQTTQ 692 >gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 661 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 126/256 (49%), Gaps = 7/256 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + A+ ++ AE KS FL +MSHELRTPL AILG+SE++E + + Sbjct: 251 ISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMEDHAVTSES- 309 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + I R+GQHLL LI +IL+ SRIE+G+ E+S + ++ + A Sbjct: 310 ---LEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFESFRELAD 366 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + + + D +RQ++ L++NAVKFT G + V V + + Sbjct: 367 DKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDA-GEIGVAV-RVADGNLEL 424 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +++D G GI + ++ F Q + G GLGL I Q + GG +RS+ Sbjct: 425 NVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDISVRSQAG 484 Query: 464 EGVEVIAILPNTRVLN 479 G + LP R + Sbjct: 485 AGSQFTVRLPIERTAS 500 >gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] Length = 630 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 K ++RAEE + KS FLA+MSHE+RTPLNAI+GFS ++ + EYI Sbjct: 392 KKELILAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETA----DTPESHEYI 447 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + LL LIN+ILDLSRIEAG + + + + +R+ R N+E Sbjct: 448 RIIEDNNCLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPA-NVECI 506 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 + V+ ++ + QV+ N LSNA+K+T G + V ++D G G Sbjct: 507 AEFGMKKCHVYTEKNRLGQVLGNYLSNAIKYTTE-GSITVGYYPPKDGNMRFYVRDTGCG 565 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+ + + F + +QG GLGL I Q I + S++ +G E Sbjct: 566 ISPEKQKAIFQRFVKLDN----FKQGTGLGLSICQMIAEKMHATVGVSSEIGKGSEFWIE 621 Query: 472 LP 473 +P Sbjct: 622 IP 623 >gi|315181686|gb|ADT88599.1| sensor histidine kinase LuxQ [Vibrio furnissii NCTC 11218] Length = 858 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 7/282 (2%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + + + A+ S RK AEE ++ FLA MSHELRTPLN ILG S++ Sbjct: 446 RIESIITQGQDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQL 505 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 ++ + E + + SG+HLL ++N+ILD S+IE G++ + ++ L+D+V Sbjct: 506 LKRTV----TEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVS 561 Query: 334 ECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 + + +EK + + + V D+ + Q++ NLL+N+VKFT G + + Sbjct: 562 AIERIYRPLCREKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQL 621 Query: 392 TVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 + T I++ D G GI E ++ + F Q G GLGL I S++ Sbjct: 622 HLIETEAGAKLEITVLDTGVGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIE 681 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GG ++S G LP V H + + Sbjct: 682 MLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNEGKSR 723 >gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 919 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 94/390 (24%), Positives = 157/390 (40%), Gaps = 47/390 (12%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 + TL WT S ++ A L + ++ + FF + + ++S Sbjct: 47 AVATLEAALDWTVPNPPAILSMIIVFAAFSGGLWSGIVTALISCVFFALYFS-KDGVLLS 105 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 ++ + A + + + E + E + R+ Sbjct: 106 YDEDNLLRVIVYAVTTPAMAVMASIAKRRADAMGEASLENER---EHSASLRALLMQRQA 162 Query: 242 AEE-----------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 EE + AKS FLAS+SHE+RTP+N I+G + + + + +EY Sbjct: 163 VEEELQQAKEAAEAASRAKSEFLASVSHEIRTPMNGIIGMTSLALQTEL----TQEQREY 218 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + + S LL++IN++LD S+IEAG+ E+ +I+ + + L LRA EK +E+ Sbjct: 219 LEMVKISADALLSIINDVLDFSKIEAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLEL 278 Query: 351 FQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG----------------------- 386 + P + + D +RQV++NL+SNAVKFT G Sbjct: 279 AYDVGPDVPEALVGDPLRLRQVLVNLVSNAVKFTDAGEVVVRAEVDSRAPLTPEEEASAD 338 Query: 387 --GRVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + G G +S+ D G GIA + V +F Q + G GLGL Sbjct: 339 SQGTPSLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLGL 398 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I ++ GG+ I S+ +G L Sbjct: 399 TICARLVEMMGGKIWIESEAGKGSTFHFTL 428 >gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1001 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 22/291 (7%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 ++ L +E E A++ + +RAEE + AKS FLA+MSHE+R Sbjct: 430 RTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIR 489 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLNAI+G +E+ E + E + + S + LL ++N++LDLSR+E+GR L Sbjct: 490 TPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHL 545 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAV 380 S + R + ++ A K ++ I +V D +RQV+LNL+ NA+ Sbjct: 546 ESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNAL 605 Query: 381 KFTAIGGRVHVTVGW----------------TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 KFT GG V +TV RG ++ D G GI + SF Sbjct: 606 KFTDEGG-VSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESF 664 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 Q + G GLGL I++ ++ GG+ +RS+ +G E +P Sbjct: 665 VQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFA 715 >gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response regulator hybrid transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 676 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 14/323 (4%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE 220 V + P V + + + V+ + L +T + + Sbjct: 219 QRVIATGLPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQAEARR 278 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L AE R+ AE + K FLA++SHELRTPLNA+LG+++++ M Sbjct: 279 ALLLEAESR--------AREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA---MR 327 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P + ++ + I RS + ++LI+++LD+S I +G+ L + L D++ ++ Sbjct: 328 PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 387 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K I + + P + + D ++QV NLL+NAVKFT GG V +TV + Sbjct: 388 PMARQKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGL 446 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G GI +P V F Q ++ G+GLGL IA+ ++ H G S Sbjct: 447 VA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAAS 505 Query: 461 K-LREGVEVIAILPNTRVLNFIP 482 G + LP + P Sbjct: 506 SGADLGTTMAVTLPLHAPPSNEP 528 >gi|116625338|ref|YP_827494.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228500|gb|ABJ87209.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 489 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 145/373 (38%), Gaps = 5/373 (1%) Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 E+ +I + L I + L + Sbjct: 105 EIREAFQQGAGSEIRQSATIGVSFLYVAVPVAGGASAIRIAFPLSEINRQIGQIRGKILV 164 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 + ++F P V+ ++ A L +A A F S L Sbjct: 165 STSVAFLPAVLIVAILARFISRRLAAIMAHAGELARGNFRARLPQTDSSEFGQLEQT--L 222 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ L+ S E+ + F+ ++SHELRTPL +I G++E + + Sbjct: 223 NETAENLQQTVSQLQHEHSELEKLERIRKDFVINVSHELRTPLASIQGYTETLIDGALT- 281 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + ++G I + + L L ++L LSR+E R + S ++ + ++ Sbjct: 282 -DPDHNMRFLGIIRHNAERLARLTEDLLTLSRVEQKRQKFEFDLHSANALIHDAFELVSP 340 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A++ IE+ ++ P + V D + + Q++ NLL NA+K+T G++ + G Sbjct: 341 IARKNYIELVEERAPEDAVVCCDSEAVSQILSNLLDNAIKYTPADGKITMGATPV-GSMV 399 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GI E ++P + F + A G GLGL I + ++A H G + S Sbjct: 400 EFFVRDTGAGIPEEDLPRLFERFYRVDKARSRELGGTGLGLSIVKHMVAAHSGATRVESV 459 Query: 462 LREGVEVIAILPN 474 + +G LP Sbjct: 460 VHQGSTFYFTLPV 472 >gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 975 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 10/255 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ + + ++ AE N AKSRFL++MSHE+RTP+N ILG +V+ G + Sbjct: 556 ISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGMVDVLR----GTELS 611 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E++ + +G+ L+ L+ +IL+LS+IE+G EL+E+A +++ + + +L +AQ Sbjct: 612 GRQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLELAGQVVALLSPQAQ 671 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WTSGR 399 K + + + D +RQ+++NL+ NA+KFTA G V + + S Sbjct: 672 AKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAA-GEVALKLSLLPARLSRE 730 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G GI + + F Q + A G GLGL I ++ G+ + Sbjct: 731 ELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAICALLVDGMNGRLWLE 790 Query: 460 SKLREGVEVIAILPN 474 S+ G LP Sbjct: 791 SEPGAGSVFYCALPR 805 >gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048] gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048] Length = 611 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 375 ERIEQERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 432 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 433 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 491 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 492 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 550 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 551 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLPMA 603 >gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 903 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 8/290 (2%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + Q + I + A+ E ++ A + + AK FL+ MS Sbjct: 484 PLWISVSTTPIVNENGRVERQIDLITDITHRKQAEKELIEAKEHALQLSEAKEMFLSVMS 543 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLN ++G + ++ P + + + S ++LLN+IN+ILDL+++E G Sbjct: 544 HEIRTPLNTVIGVAHLLLDNDPLPGQMDD----LNMLKFSAENLLNIINDILDLTKMETG 599 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 +L ++ + R+ + L + K + D + + D+ + QV++NLL Sbjct: 600 HLQLETIPFNIQSLTRDIVSSLHINVSSKGNILELDFDDRIPKFIKGDKIRLYQVLMNLL 659 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NA+KFT G + + Q I +KD+G GI + ++ + F Q + Sbjct: 660 GNAIKFTDQGNILLIIRLLEENDEQVILYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSR 719 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLGL I Q ++ G + ++S + G + + ++ +PE Sbjct: 720 HYGGTGLGLTITQKMLQLLGAEISVQSSVGVGTSFSFSICFEKAVDVVPE 769 >gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] Length = 1238 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 94/434 (21%), Positives = 171/434 (39%), Gaps = 38/434 (8%) Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 MW L T A+ S I +L + I + +L + + Sbjct: 156 VMWLLTTPAMVYLL---------SIISDFSRIKVYSVMLADVLMIS--FGILAFLAFNKY 204 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + +Y A + + + ++ V+L + ++ + Sbjct: 205 L--SILLYLVAWVFFSYVVYSMWTMFHASIAEARHDSSRVSLEVLRLFAVGLWFTFPGIW 262 Query: 193 LATALSFFTYITYHLFK-------------SNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + L T S + E+ LIA V + + Sbjct: 263 IIVKLGLVDVHTEEWMWCACDFLGKVMFSSSLLHGNFLTIEQRRLIAMRIVEEGNRIQVI 322 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + ++ K RF++SMSHELRTPLN I+G S+ + + + G +N++ K I I SG Sbjct: 323 QELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKT-ITTIKTSGA 381 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LLNLIN+ILD + + G+ + ++L +V + I + Q A+ +++ + ++ Sbjct: 382 RLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR-GVKLVNDLRENVP 440 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D + QV NL+ N+ KFT G + + +++ D G GI E + Sbjct: 441 FVLGDTGRIIQVFHNLIGNSCKFTH-NGFISIAAS-VKDDEVEVAVSDTGIGIPEDKFDQ 498 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------- 472 + +F Q +++ G GLGL + + ++ HGG+ ++SK +G L Sbjct: 499 IFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTLKIHSSAE 558 Query: 473 -PNTRVLNFIPEDN 485 PN P + Sbjct: 559 HPNEGQPQGTPTEA 572 >gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] Length = 617 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + +E + KS F++++SHE RTPL +I E+++ ++G + NET +E + I + Sbjct: 382 KLKEIDQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTI-NETQQELLKVIKEDSER 440 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI ++LDLSR+E+G+ L ++ I+ + L+ ++ +N++I K S Sbjct: 441 LNVLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRNVKIEIKNVGSSLF 500 Query: 361 VWADEKGMRQVILNLLSNAVKF--TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V AD + V+ NL++NA+K+ G + + + + +S++DNG GI E I Sbjct: 501 VLADINKIILVLTNLITNAIKYKSEEREGHIIIEA-FKKEKNIVVSVEDNGRGIPEEYIE 559 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q ++ + +G GLGL I + I+ NHGG+ + S L +G L Sbjct: 560 KIFNKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDSILGKGSTFYFSL 613 >gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] Length = 1287 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 DL +L+ + L+D R++A + + AKS FLA+MSHE+RTP+NA+LG ++ + P Sbjct: 512 DLTEQLKREQELAD-AREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPPR 570 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++Y+ ++ + LL L+N+ILD S+IEAGR EL SL ++ + +L + Sbjct: 571 P----RDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQ 626 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH-VTVGWTSGR- 399 Q+K+IE+ ++ PS+ + D +RQ++LN+L+NA+KFT G + + Sbjct: 627 VQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGT 686 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +I I+D+G G+ + + F Q +I G GLGL I + ++ G+ + Sbjct: 687 CHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRV 746 Query: 459 RSKLREGVEVIA 470 S G Sbjct: 747 TSSPGVGSTFTI 758 >gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 714 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 8/236 (3%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R R EE + K ++++SHELRTPL++ILGF E++ E Y+ +H Sbjct: 474 RDRTEEQKMDHVKDELISTVSHELRTPLSSILGFMELLR---YRQPTPEKTTRYVEIVHE 530 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L NL+N+ LD+ R+E G+ + + SL ++ E I A+ I D Sbjct: 531 EAKRLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETH--TIHAVTDD 588 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 ++ADE ++QVI+NLLSNA+K++ + V + T+ + +S+ D G GI Sbjct: 589 DPILIFADEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQ-AILSVTDYGIGIPPTA 647 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + T F + + G GLGL I + I+ +HGG + S+L +G +L Sbjct: 648 FDKLFTKFYRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVESELNQGSTFTIVL 703 >gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] Length = 1128 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 153/378 (40%), Gaps = 6/378 (1%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G+ W ++ V + + +I + + F++ + + + Sbjct: 330 LKGIDWAIVVEVPESVAFARVNQLETLFIFAMLTAILLVVMASHYLSNFITAPLLKLTWA 389 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + + + +S + + +++ ELE L Sbjct: 390 AEKVSAGDLDADMTNTQRKDEIGRLAVSFERMQRSIREKILLIKQQN---EELESNLKLI 446 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + N K FLA+ SHELRTPL+ ++G +E + GP+ +E +K + I Sbjct: 447 QKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITSE-HKYQLDIII 505 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SGQ L L++++LD ++ G ++ SA+ L R + + K I I ++ Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLAGSTRLVLELSSHLLGTKPIRIINQVP 565 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI Sbjct: 566 NEPVWVSADPQRLEQVLYNLVGNAIKYTSE-GKIVISANVVDDN-IRVQVVDTGQGIPAD 623 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + Q QG GLGL I++ ++ G + S+ G LP Sbjct: 624 QLEHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIELMNGSLYVSSQPMVGTTFSFTLPIA 683 Query: 476 RVLNFIPEDNHESTQYKC 493 + + +E+ +K Sbjct: 684 SLEQIEVANQYEAPHFKA 701 >gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] Length = 799 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 5/244 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + K F++++SHELRTPL ++ +I + E ++ + L+ Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRAALGLIAGGAL-QRRPEKVQQMFDVAIGNCDRLV 618 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N+ILD R+ +G+ +L + D+++ + + AQ+ NI + + +P +W Sbjct: 619 RLVNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEP--MDLW 676 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + Q + NL+SNA+KF+ G V V I ++D+G GI +I + Sbjct: 677 VDADRILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFE 736 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q + A G GLGL I + I+ HGGQ + S++ +G R + +P Sbjct: 737 RFQQVDASDSRAMGGTGLGLAICRRIVRQHGGQIWVESEVGKGSSFFFT--VARNVAVLP 794 Query: 483 EDNH 486 + Sbjct: 795 TAST 798 >gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas macleodii ATCC 27126] Length = 932 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 9/249 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + D + ++ AKS FLA MSHE+RTPLNAI+G +++ + ++ Sbjct: 397 RTRQQRKALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQR----AAEDKD 452 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I + Q LL++IN+ILD S+IEAG+ ++ + +L +V + I + RA+EK Sbjct: 453 QQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEEK 512 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQY 402 +IE+ Q I + ++ D ++Q++ NL+SNA+KFT G + V+V T Sbjct: 513 HIELIQHISRDVPLNLIGDPLRIQQILSNLVSNALKFT-EDGLISVSVRCTHNVEDIQLE 571 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +KD G G+ + + F QG +I G GLGL I + ++ GG+ + S+L Sbjct: 572 FEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVESQL 631 Query: 463 REGVEVIAI 471 +G Sbjct: 632 GKGASFHFT 640 >gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1159 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 98/402 (24%), Positives = 164/402 (40%), Gaps = 24/402 (5%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 ++ +G+ + ++ A L L E T L I +L + Sbjct: 547 RRFEFGQSLVGQAARTKRSIVARTPADYLKIASS-LGEATPVTLIVLPILFEDQVLGVVE 605 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG---MLATALSFFTYITYHL 207 +++ + F + L+ + ++ I++ D L + + + Sbjct: 606 LASFTPFTQVHLDLLNQLTETIGVNVNTIIANSRTDALLEESQRLAGELQARSEELQSRQ 665 Query: 208 FKSNVKILSCQAEKDDLIAEL---EVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257 + + + L + EV + ++ R+ EE + KS FLA+MS Sbjct: 666 EDLQLSNAELEEKATLLARQNHDIEVKNAEIEQARQELEERARQLALASKYKSEFLANMS 725 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L + ++ L EY IH +G LL LIN+ILDLS++EAG Sbjct: 726 HELRTPLNSLLILARLLAQNPTRNLT-AKQVEYAHVIHTAGSDLLQLINDILDLSKVEAG 784 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + ++ + L D+ + EK + + P + + + D+ + QV+ NLL Sbjct: 785 KMDIHLERVVLRDLAEDLKSTFSPITVEKGLRFTVDLAPGIPADLLTDQHRLAQVLRNLL 844 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 SNAVKFT G V + + T G + D G GIAE + + +F QG Sbjct: 845 SNAVKFTER-GSVELAIVATLGGDLSPATPSVTFKVTDTGVGIAEENLERIFGAFQQGDG 903 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + + A GG+ RS+ G Sbjct: 904 TTSRRYGGTGLGLSICREVAALLGGEIEARSEFGRGSTFSLR 945 >gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 589 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E KE I+ + Sbjct: 360 RLDKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKEIAQIIYDESLRMGR 417 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDL+R+E+G L I++ + + + I A+EKNI + I + Sbjct: 418 LVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISLTEEEFML 477 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE M QV NL+ NA++ T+ GG V ++V I IKD+G GI E ++P + Sbjct: 478 DEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDG-LKIDIKDSGSGIPEEDLPFIFER 536 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A G GLGL I ++I+ H G + S++ +G +P R Sbjct: 537 FYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTKR 589 >gi|255528504|ref|ZP_05395290.1| histidine kinase [Clostridium carboxidivorans P7] gi|255507808|gb|EET84262.1| histidine kinase [Clostridium carboxidivorans P7] Length = 392 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 20/356 (5%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLAT 195 ++ A L+I L + + N L + +F ++ A+ I + + Sbjct: 3 ISFTNFALLIIGLYLLNVPNSKLHPQTYNAFLVMIFAILLSIINYYNFAKSFIQKSEILN 62 Query: 196 ALSFFTYITYHLFKSNVKILS--CQAEKDDLIAELEVAKSLSD--------ETRKR---- 241 HL + + + QA + L K+ + E +KR Sbjct: 63 KAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKAELEAIQSNIKYEEKKRLLNK 122 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETMGPLNNETYKEYIGDIHRS 297 A E ++ F A++SHELRTPLN I +++ + + N +Y+ I ++ Sbjct: 123 AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTIKQN 182 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 LL LIN ++D+++++AG +E++ S ++ I + + + + KNI + + Sbjct: 183 SYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDTEVE 242 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 + D + +++LNLLSNAVKFT G ++V + + S ISIKD G GI + Sbjct: 243 EKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNI-YDSTDKVIISIKDTGIGIDKSMQ 301 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q +I +G G+GL + +S++ H GQ + S+L EG E I LP Sbjct: 302 KLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 357 >gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 842 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 5/261 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++E A+ + E R AEE KS F+A+MSHELRTPL +I+GF+E+ + N Sbjct: 584 VSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GGLRSRGN 640 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + DIH +G +L L+N++LD++++E+ + L ++R + L+ + Q Sbjct: 641 PAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRSLIRPVVRELEPQQQ 700 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I++ ++D + AD +QV+ N+L+NA+KF+ IGGR+ V I+ Sbjct: 701 QKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDEQGDICIA 760 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D GPGI E+ + F Q S G GLGL I + I+ G ++ Sbjct: 761 VSDQGPGIPPQELDKIFQPFVQSSKTRN-GSGGTGLGLAICRKIIDAMDGTIAASNRSEG 819 Query: 465 GVEVIAILP-NTRVLNFIPED 484 G LP T P + Sbjct: 820 GSLFRITLPCRTGASETRPAE 840 >gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 466 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 132/324 (40%), Gaps = 11/324 (3%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + LS A F ++ L ++ V ++AG ++ T + S Sbjct: 152 VVTLSPLGGLDASMADFRVLLTGLGALGLVVAGVGSWAVAGSALRPVARLTETARAIASS 211 Query: 211 NVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 QA +D+L + D E + RF+A SHELR PL AILG Sbjct: 212 RDLSRRVQATGRDELAMLASTFNQMLD----SIETAYRLQQRFVADASHELRAPLTAILG 267 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ L E + + + L L+ ++L L+R +AG L + Sbjct: 268 NLDLLRRRPG--LPPEEQARALEEARSEAERLSRLVADLLSLARADAG-VPLVIKPFDVD 324 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +V E + A+ + + + V D ++Q++L LL NA+K+T GGR+ Sbjct: 325 AVVLEAFQEARRLARGQELVLD---PLEPVHVPGDRDRIKQLLLILLDNAIKYTPAGGRI 381 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + + G +++ D G GI ++P V F + A G GLGLPIA+ I+ Sbjct: 382 TLGLRGAGDGGAILTVADTGVGIPPADLPHVFERFYRADPARSRDPGGTGLGLPIARWIV 441 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 H G I S G V LP Sbjct: 442 EQHQGHITIDSAPGRGTTVTVRLP 465 >gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus ED133] Length = 554 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1132 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 142/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + +D +L ++ D ++Q++LNLL NA+KFT G VH+ V +G Sbjct: 905 QLAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTER-GSVHLRVAALPEHTQQGIR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSA 1049 >gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1936 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 171/386 (44%), Gaps = 19/386 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ L ++ + + T I + ++ ++ M + + L ++ + Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + A L + L ++N ++ + E+E + Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKSQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231 Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 EE + KS+FLA+MSHELRTPLN++L S+++ G L + +E+ Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ +G LL+LIN+ILDLS+IE+G L ++L D+V + A+E+++ Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDLVENLNRTFRQLAEERHLAFVI 1350 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYIS 404 ++P L V D K ++QV+ NLLSNA KFT G V + +G + +S Sbjct: 1351 DVEPGLPRAVRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLRIGSAEGSPLRAGSQWLALS 1409 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIAE + + +F Q G GLGL I++ I GG+ ++ S++ Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGS 1469 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + + E+++ Sbjct: 1470 GSTFTLFLPFEPPVQAVTTRGAETSE 1495 >gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1023 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 142/270 (52%), Gaps = 10/270 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E +V + ++ AE + AK+ FLA MSHE+RTPLN ++G ++E ++G Sbjct: 485 HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTSLGA- 543 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I SGQ+LL L+N+ILDLSRIE+G+ L +SL + E I + + Sbjct: 544 ---EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPVSLKKLTSEVINLFRPM 600 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A+EK + I I S+ + +D +RQ++ NLL N++KFT G+V + V Sbjct: 601 AEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK-GKVLLKVEAEKFPNN 659 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD G GIAE ++ + +F Q + G GLGL I++ + G+ + Sbjct: 660 KFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEII 719 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++S++ +G E + ++ IP E Sbjct: 720 VKSQVNQGSEFTLSILVEKLEYEIPAGIQE 749 >gi|134299752|ref|YP_001113248.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052452|gb|ABO50423.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 493 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 136/314 (43%), Gaps = 8/314 (2%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI---LSCQAEKD 222 + + V ++ + L+ L+ L + + + + + + E Sbjct: 177 ALQSMSVYSLLFGLVLATLFSWLLSRSLSRPLLKMKDVANAMSRGDYSRSINIKSKDEIG 236 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L L +E + + + F+A +SHELRTPL I G +E + + Sbjct: 237 MLADSLNTLSHDLEEKINQLRRIDDTRRDFVAGVSHELRTPLTIIQGNAEALLDGVI--E 294 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + ++++ +I+ L L NE+LD+ +IE G+ L + ++ +I + +Q Sbjct: 295 DKDKQRDFLINIYEESLRLKRLSNELLDMRKIETGQVNLYKEKVNASEIFFNVVSRMQHL 354 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+++ I + + ++ D + QV++NL+ NA++F+ + + Sbjct: 355 AKQRGIILNLSVPEQPVILYLDTDRLGQVLINLIDNALRFSRSEVTIELK---DFPDKIK 411 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + I DNGPGI E E V F + + + G GLGL I + ++ HGG + S+ Sbjct: 412 VQISDNGPGIPEAERNLVWDKFYKVDKSRSRSAGGTGLGLSIVKQLIELHGGTVCLTSRE 471 Query: 463 REGVEVIAILPNTR 476 EG I +P + Sbjct: 472 GEGTTFIFTIPKEQ 485 >gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1815 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 104/416 (25%), Positives = 168/416 (40%), Gaps = 35/416 (8%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + IG + + V + G L E L + +L + ++ Sbjct: 1173 FRPGETLIGTAAEEKRTIQVDNVPPGYLKISSGLGEAPPAHVIVLPVLFEGKVLGVIELA 1232 Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK--S 210 + F FL+ ++A S I + L + + Sbjct: 1233 SFQPFTHIQRDFLNQLAEMIATSVNTISVNTKTEKLLEQSQELTEQLRDRSQELENRQKA 1292 Query: 211 NVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + EK +L+A+ EV + +E R+ EE KS FLA+MSHE Sbjct: 1293 LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHE 1352 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN++L ++++ L+ E+ IH +G LL LIN+ILDLS++EAG+ Sbjct: 1353 LRTPLNSLLILAKLLADNAESNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKM 1411 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 ++S + I+L+ +V + EK ++ ++ P L ++ DE+ + QV+ NLLSN Sbjct: 1412 DVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSN 1471 Query: 379 AVKFTAIGGRVHV--------------------TVGWTSGRGQYISIKDNGPGIAEGEIP 418 AVKFT G V ++ S+ D G GIA ++ Sbjct: 1472 AVKFTDSGAVELVIRPAGADVPNSIREHLLEAGSLHDADADLIAFSVTDTGIGIASSKML 1531 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1532 VIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1587 >gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] Length = 466 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + + L P+ +A+ + + I+ + LS + HL + Sbjct: 157 LIFDMGLILAPLALAMILITVWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EK + I ++P + V D+ M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELQFIEKKLRISTNLNPEII-VMIDDDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELHIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKGKGTTVIIKL 457 >gi|169333792|ref|ZP_02860985.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM 17244] gi|169259357|gb|EDS73323.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM 17244] Length = 541 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 9/264 (3%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + + + AE + KS FL+ MSHE+RTP+N I+G +++ M N E Sbjct: 143 QKKQRKLSIELQVAETASQEKSNFLSRMSHEIRTPMNGIIGMTDIA---CMNYDNPEKSL 199 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + I S ++LL+LIN+ILD+SRIE G+ EL + L IM RA + ++ Sbjct: 200 DCLNKIKLSSEYLLSLINDILDMSRIENGKIELYKQTFDLCGFCERLYIMFSQRAHDASL 259 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYIS 404 + + + + DE + QV++N+LSNA+KFT GR+ V V I+ Sbjct: 260 DFNITSNITRPYLIGDELRLNQVVVNILSNALKFTRTNGRIDVDVNQKIIDDEICLLTIT 319 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D+G G+++ + + F Q G GLGL I+ +++ G+ + S+ + Sbjct: 320 VEDSGIGMSKEFLAKIFEPFEQEVNTTSHQFAGTGLGLAISHNLIKLMNGKINVSSEQGK 379 Query: 465 GVEV--IAILPNTRVLNFIPEDNH 486 G + LP T +++ + + Sbjct: 380 GSKFEISVELPITDKADYMNDQDS 403 >gi|149374896|ref|ZP_01892669.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149360785|gb|EDM49236.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 647 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 16/357 (4%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L +L++ V S +V+ + + + + + Sbjct: 171 ILWTSLAVGFSLLLFTLLIVNHSLNSIVLPIHGLSRRVAKLTNREYEEVEVGLAG----A 226 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 T + + + + +L A + + S++ R RAE N AKS FLA+MSHELRTP Sbjct: 227 TREIRELEESLNALSRHLRNLKASRDETLASSEKARGRAEMANRAKSEFLATMSHELRTP 286 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG E++ E + + K+Y+ +S + LL +IN+ILD S I+ G EL Sbjct: 287 LNGVLGMIELVTDEAL----SARQKDYLQTARQSTEDLLTVINDILDYSHIDRGTLELDN 342 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS---VWADEKGMRQVILNLLSNAV 380 L +++ C + A+++ + + K V D +RQ++ L+ NA+ Sbjct: 343 REFDLKELITNCAASYRHVAEQQGLALSTKFIGDWPDRLLVLGDAPRLRQILAGLIDNAI 402 Query: 381 KFTAIGGRVHVTVGW--TSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V G+ + ++ D+G GI I + SF Q + Sbjct: 403 KFTGD-GFIKVQAGFFSLEENCLVLNCTVSDSGCGIPVERIHDIFNSFEQLDTGDSRSYG 461 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 G G+GL + Q ++ GG + + + +G + LP + E K Sbjct: 462 GTGMGLSLVQRLVELMGGHVKVETDIGKGSQFRFELPFELATRVDHVEASEQGPIKT 518 >gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str. SLCC5334] Length = 594 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 140/271 (51%), Gaps = 12/271 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ V IL+ + + + + V + +++E K+ E KS F+ ++SHELRTP++ + Sbjct: 331 RTYVAILTLLYTGEHVRSVVAVIRDMTEE--KQLE---KMKSDFVNNVSHELRTPISMLQ 385 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I ++E +E+ I+ + L+N++LDL+R+EAG + + + Sbjct: 386 GYSEAIIDGV--AQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNHMDNQKMPI 443 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG-- 386 ++ + I + A+E +E+ +++ D+ M QV++NL+ NA++ T Sbjct: 444 APLLEKVIANFDVLAKENFVELGLELETPNLEYSYDQDRMEQVLINLIMNAIRHTGKEGY 503 Query: 387 -GRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLP 443 G+V + I++ DNG GIAE +IP + F + A K + G G+GL Sbjct: 504 AGKVILKQTIDKTRNNLVITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLA 563 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I ++I+ H G+ + S L EG + I LP Sbjct: 564 IVKNIVEAHNGKISVESVLGEGSDFIITLPL 594 >gi|91978328|ref|YP_570987.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91684784|gb|ABE41086.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 1122 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 10/358 (2%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + + +++ + L+ ++L P A + Sbjct: 553 VLPRRVHALINSQVGHYLSVFMVSAGLVGLT----LMMIYLQTSPATEAQQIVLWDILWK 608 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L +L ++ F + + I + ++ AE Sbjct: 609 LFFALTIIVGVVTWLFVLARQSRQAAEAETRRQTTLLMQEIDAHRQTDAELQRAKEVAES 668 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 NLAKSR++ +SHELR+PLNAI G+++++E ++ P ++ I + RS HL L Sbjct: 669 ANLAKSRYVVGLSHELRSPLNAISGYAQLLEQDSSLP---PRPRDQIRLMRRSADHLSGL 725 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 I+ +LD+S+IEAGR LS + L + + + + M +L+A K++E K L V+A Sbjct: 726 IDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVGMFRLQAAAKDVEFVFKRPQYLPPVVYA 785 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DEK +RQV++NLLSNA+KFT G VH V + + + ++D GPGI ++ + Sbjct: 786 DEKRLRQVLINLLSNAIKFT-QSGSVHFIVHYRNP-VAELEVRDTGPGIHADDLERIFAP 843 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F +G++ + G GLGL I++ + GG + S L +G L + V N Sbjct: 844 FERGALGVSQPHTGTGLGLTISKLLAGVMGGDLSVTSALGQGSTFRVKLLLSEVTNPT 901 >gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 522 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 4/235 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + F+A++SHELRTP+ A+ GF+E + + + T + + IHR + + Sbjct: 267 RLEQIRRDFVANVSHELRTPVAAVQGFAETLLEGVIR-EDPATAEHFAQVIHREAERMAR 325 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ ++LDL+R+E+ L L D + + R + + + + P VWA Sbjct: 326 LVQDLLDLARLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWA 385 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI---SIKDNGPGIAEGEIPTV 420 D + QV NLL NA ++T +GG V V VG Q + ++D G GI +P + Sbjct: 386 DRHRLDQVWTNLLENARQYTPVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRI 445 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + I+ HGG S+L G + +P Sbjct: 446 FERFYRVDPGRSRAAGGTGLGLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIPLA 500 >gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047] gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047] Length = 621 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + + +++ + ++ +IN+ Sbjct: 379 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPKIAPKFLEVTQQETSRMIRMIND 436 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQL-------RAQEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++L D V + + ++ +K I +++ Sbjct: 437 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINRELGSQALW 496 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 497 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NQNHVILSISDQGLGIPRKDLGKI 555 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S G LP + Sbjct: 556 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLPYEPMTEE 615 >gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 637 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 12/243 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + +AEE + KS FLA+M+HE+RTPLNAI+GFS+V+ E + ET +E+ Sbjct: 402 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRQEFADI 457 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + + L LI ++LDLS+IE+ L + +++E M+ LR E +E+ Sbjct: 458 IQNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELY 516 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 L + D + Q++ NLL+NA+K T G + ++ ++ ++D+G GI Sbjct: 517 DCEELV-METDRNRLTQILTNLLTNAIKHTQE-GSIRFGYKRSALSVEFF-VQDSGEGIP 573 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E +I T+ + F Q +GVGLGL I Q ++ GG + S++ EG LP Sbjct: 574 EDKIDTIFSRFVQLDNW----SKGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 629 Query: 474 NTR 476 R Sbjct: 630 LIR 632 >gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM 15053] gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM 15053] Length = 1113 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E + AK +E N AKS FL+ MSH++RTP+NAI+G +E+ + + Sbjct: 702 EEEKKAKCALEEAYASVNRANQAKSDFLSRMSHDIRTPMNAIMGMAEIARN---STGDEK 758 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + + I SG+HLL LINE+LD+S+IE+G LSE I L +RE +++ ++ Sbjct: 759 RIADCLSKIDLSGRHLLGLINEVLDMSKIESGNMSLSEDVIVLDSFLREVSEIVRPDVEQ 818 Query: 346 KNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--- 401 K+ + + S+V+ D ++Q+++NLLSNAVK+T GG + V++ + Sbjct: 819 KSQHYTVTRKEGKHSAVYGDTVRLKQILINLLSNAVKYTQEGGHISVSLEEKLSGERGVG 878 Query: 402 --YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D+G G+++ I + F + + S QG GLG+ I +++ G + Sbjct: 879 CFEFVVEDDGIGMSKEFIDKLFLPFERAEDSRVSQIQGTGLGMAITLNLVQMMNGTIQVD 938 Query: 460 SKLREGVEVIAI 471 S+L EG + Sbjct: 939 SRLDEGTKFTVT 950 >gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1] Length = 526 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 9/347 (2%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 +I S + ++ + + ++ L + + Sbjct: 168 MGTIILTSPMTFKQDIKSRMLSTTFVPFLILMLIAMIALMLMSNSLLKPIREIIKTSKSY 227 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + N K++ + ++DE N + F++++SH+ R+PL +I Sbjct: 228 AQGNFNARVNVTAKNEFGELARYMEEMADE----LSRSNEYRKSFISNISHDFRSPLTSI 283 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 G+ E + G + E +++Y+G + Q L L +L+L+ ++ +L +S Sbjct: 284 KGYIEAMLD---GTIPLEKHEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFD 340 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 + DI+ I + R +++ I + + V+AD ++QVI NL+ NA+KFT G Sbjct: 341 IRDIITPTINTFEKRCKDRGIFLDSVFLTDNTVVYADRTKIQQVIYNLVDNAIKFTPEGR 400 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 ++ V V Y S+KD G GI + V F + + + G GLGL I + Sbjct: 401 QIRVQVT-EKDNKIYTSVKDEGVGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKE 459 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH-ESTQYKC 493 I+ HG Q + S+ EG E I LP + + + H E T++ Sbjct: 460 IIKAHGEQITLTSEEGEGSEFIFSLPKEKDMQVPIKPVHVEHTEHHS 506 >gi|294054688|ref|YP_003548346.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614021|gb|ADE54176.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1071 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 11/273 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I + A++ + + AE + AK FLA MSHE+RTPLN ILGFS ++ L Sbjct: 672 EDITLRKQAEADLIQAKDEAEAASRAKDEFLAVMSHEMRTPLNPILGFSAMLRES----L 727 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE Y+ I + L LI++ILD RI S L D+ + Sbjct: 728 PNEPEAGYLDTIVSAANRQLRLIDDILDYMRINNSSITASPEPFRLADLCETAVHDASSL 787 Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 ++ ++ S +V D +R+++ NLL NA K+T G V + + + Sbjct: 788 TDNLALDFHNELPDSQDFTVVTDLIMLRRILDNLLGNACKYTNE-GSVDLYLRLAEYDSR 846 Query: 402 Y----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 I ++D G GI E + +F Q + +G+GLGL I + ++ GG+ Sbjct: 847 ISTFEIEVRDTGIGITEEMQRNLFEAFSQADSSYSRKHEGLGLGLAICKRLLDILGGEIS 906 Query: 458 IRSKLREGVEVIAILPNT-RVLNFIPEDNHEST 489 + S +G +P + PE +S Sbjct: 907 VESIRGKGSSFTLSIPLQIKEDTETPESPQDSA 939 >gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 725 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 87/431 (20%), Positives = 167/431 (38%), Gaps = 27/431 (6%) Query: 68 QNPIFPMWSLITLA---VYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 P + V A + ++ ++ +A + + + Sbjct: 292 GMPFLAELAAPISTDERVLAVLILHSRRANTFTEEVLAFIDALRERAGLPLARAMAYQVA 351 Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 A L + + + ++ + Sbjct: 352 YETSYHLGQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQPQRSSFYVGIDLVEHLL 411 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS--------D 236 +S L+ +F+ N+++ E L + D Sbjct: 412 TRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQPYQELHVLSVPTRDSHHQLTGRLWVVSD 471 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 TR+R E + K F+ +SHELRTPL +ILG++E++ L++E+ +E++ + Sbjct: 472 RTRER--ESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ--DLDSESQREFLLTVSN 527 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 L ++ ++LD+SR+EAG +L+ A+ L ++ E LQL Q ++ + Sbjct: 528 EADRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEEL--TLQLHTQLVQHKLLIDMRT 585 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----------GRGQYISIK 406 L V+AD ++Q+I+NLLSNA+K++ G + + V G+ I+++ Sbjct: 586 PLPPVFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQ 645 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + + F + + + GVGLGL I + ++ HGG+ ++S + G Sbjct: 646 DQGIGIEPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVGVGS 705 Query: 467 EVIAILPNTRV 477 LP V Sbjct: 706 SFSFTLPIWTV 716 >gi|291537656|emb|CBL10768.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 437 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243 + + + +Y L + + + A+ L+ E EV + + S ++ + Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIGKMADNIILVDETEVYEEMRPFISMIKKQHMD 212 Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 N + F A++SHEL+TPL AI G++E+I G + + +IH+S + L Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 LIN+I+ LS ++ +L + L D+ +CI +Q++A + + + + + + Sbjct: 270 QALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + +++ NL SNAV++ GG V + + R I +KD G GI + + V Sbjct: 328 NGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + + G GLGL I + I+A H Q + S++ G E+ + Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437 >gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] Length = 825 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 9/263 (3%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ +L +LE + + + AE N +KS FL+ MSH++RTP+NAI+G + + Sbjct: 284 TEQRELQRQLEERSVMLHDALQTAERANRSKSEFLSRMSHDIRTPMNAIIGMTAIAGTHI 343 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + K+ +G I S + LL LINE+LD+SRIE+G ++E L D+++ + + Sbjct: 344 ---DDRDRVKDCLGKITLSSKLLLGLINEVLDMSRIESGNLAITEEEFCLNDMLQNLVTI 400 Query: 339 LQLRAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 LQ K + +V D + ++QV LN+LSNA+K+T GG++ + Sbjct: 401 LQPSVMAKQHTFDIRAHHLRHENVIGDPQHIQQVFLNILSNAIKYTPAGGKIMFDIREKP 460 Query: 398 GRGQ-----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + +DNG G+ I + + F + A A QG GLG+ I+++I+ Sbjct: 461 SNTAGYGLYEFTFEDNGYGMKPEFIEKLFSPFERADDADVLAVQGTGLGMAISRNIVKLI 520 Query: 453 GGQFLIRSKLREGVEVIAILPNT 475 G ++S R+G LP Sbjct: 521 NGDIKVKSTYRKGSTFTVELPLK 543 >gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222] gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222] Length = 1223 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 9/242 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G S + + + YI + S LL LI Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ ++ + L +++ ++ LRA ++ +E+ ++D + + + D Sbjct: 533 NDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGD 592 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421 + Q+++NL +NAVKFT G ++ ++V G ++ D+G G+ + + + Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLF 652 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 T F Q + G GLGL I++ + GG + ++L +G + TRV + I Sbjct: 653 TKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSFTI-ATRVSHSI 711 Query: 482 PE 483 + Sbjct: 712 QQ 713 >gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 812 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ + E + P + AD + QV+ N +SNA+KFT G Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHQ-G 722 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + + + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I+ GG + S+L +G LP Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805 >gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1152 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 99/489 (20%), Positives = 180/489 (36%), Gaps = 28/489 (5%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV------------ 59 +G ++S LG + E + + ++ L + Sbjct: 188 IGGVVSHPRLVLGDAAQLSTAAEAERRHSAILLCVSLFMVVYHLALFLFYRRDRSTLYFA 247 Query: 60 --ANIGTWFTQNPIFPMWSLITLAVYAANLSLGK-----KVMNSDIKIGEVYVWRI---- 108 + W L ++ + + + + + + Sbjct: 248 LYCLLWLINGTITYVSSWLLSFTEIHNMVWIVYRCDLISYYLTIPLMVLFLRSLFRDEMP 307 Query: 109 -WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + + L ++ L+ L + I S + L A Sbjct: 308 AAMPKLALLPALVFSGYVLLPESVGLHPLQGSSPQLYHLFTVLIIFWSAYGLLKAWQHKR 367 Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 + L+ +M+M ++ L + FF LF + L+ + Sbjct: 368 SGAGLILAGFILMTMVGVNDMLFDIKVVNTGFFMPFGMLLF-IVFQALALAQRFSNAFTT 426 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E E + K FLA+ SHELRTPL I+G +E + + G L+ E Sbjct: 427 TERLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLS-ELA 485 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + + + S + L +LIN+ILD +R+ L+ A+ + + + +L A+ K Sbjct: 486 RHNLHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEAKQ 545 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 + + +ID +L ADE ++Q+ NL+ NA+KF+ G + VT G +S++D Sbjct: 546 LTLVNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQ-GEIVVT-GQQVNGWLELSVRD 603 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + T+ F Q A QG GLGL I ++++ HGG + S+L +G Sbjct: 604 QGIGIDADSLKTIFEPFEQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQGST 663 Query: 468 VIAILPNTR 476 LP + Sbjct: 664 FCFTLPVSE 672 >gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus MB-451] gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus MB-451] Length = 857 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + + +E++ + SG+HLL ++N+ILD SR+E Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375 G++ + +S L ++V + + +K IE+ + + S++ V +D+ + Q++ NL Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSVTLVRSDQIRINQILFNL 603 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 G GLGL I S++ GQ + S+ G LP V + P+ Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715 >gi|257094787|ref|YP_003168428.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047311|gb|ACV36499.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 709 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 10/312 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 ++ V+VAL + + ++ A + + ++ E D Sbjct: 155 VTVAMVLVALFLEFTVGRRARELGRAADRLANRDYAAILPAAGTDEIGDLVRSFGEMRDA 214 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + +++ ++ R+ AE N AKS FL+ M HELRTPLN +LG ++++ M L Sbjct: 215 VRSYDIS---LNDAREAAEAANHAKSDFLSMMGHELRTPLNGMLGMAQLLL---MPNLTE 268 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y I SGQ LL L+N+ILDLS+IE+G+ + + D++RE + + A Sbjct: 269 RERQDYARIILTSGQSLLTLLNDILDLSKIESGKLRIESAEFDPDDLIRETLALFSASAT 328 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH--VTVGWTSGRGQ 401 K + + + S +D + +RQ++ L+ NA+KFTA G V V V + Sbjct: 329 NKQLVLAGQWRASCGQHYRSDPQRLRQMLSKLIGNAIKFTAHGKIVVEGVEVARDADSAV 388 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G GI ++ + F Q + G GLGL I +S+ GG + S Sbjct: 389 LEFSVSDTGIGIPAEKLDLLFRPFSQADSSSTRKYGGSGLGLSIVRSLTERMGGDAGVDS 448 Query: 461 KLREGVEVIAIL 472 G + Sbjct: 449 VAGSGSRFWFRI 460 >gi|110834847|ref|YP_693706.1| two-component sensor histidine kinase protein [Alcanivorax borkumensis SK2] gi|110647958|emb|CAL17434.1| two-component sensor histidine kinase protein, putative [Alcanivorax borkumensis SK2] Length = 1144 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 11/362 (3%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L+ + LLI +++ A+ P+ + + Sbjct: 574 MGGLLPQTLINHMRSRMGHFLGLLIIVALIMSG----LLALIYYQIPIADPTVKELMADT 629 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241 ++ +++ +++ + + + Q + I E + ++ Sbjct: 630 LTKVFAILIIISGVVAWLFVLAHESRVVAQEESRRQTRMLMEEIKAHEKTDLALQQAKEL 689 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE N AKSR+L +SHELR+PLNA G+++++E P E ++ IG I RS +HL Sbjct: 690 AESANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ---DPTIPENRRDAIGAIRRSTEHL 746 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 +LI +L++S+IEAGR EL + + + +++ E + M QL+A EK I + + Sbjct: 747 SDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMFQLQAAEKGIGFEFRSKSQMPTW 806 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V DEK +RQ+++NLLSNA+KFT G+V +T + + I D G GI E ++ + Sbjct: 807 VTTDEKRLRQILINLLSNAIKFTRE-GQVTLTFRYR-NQVAEFVIADTGVGIDEEDLKRI 864 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + + G GLGL I Q + GG + S +G E + +R+ Sbjct: 865 FRPFERVRKPGTPSVHGTGLGLTITQLLADIMGGDIQVSSIPGQGSEFRLSVMLSRLSGP 924 Query: 481 IP 482 P Sbjct: 925 AP 926 >gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] Length = 781 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 10/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+ ++ + + + AE LAKS FLA+ SHE+RTP+N I G +++E E + Sbjct: 392 ISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLECEPL----T 447 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + S Q L+ ++N+ILD S+IEAG+ L + + ++ + L+ + Sbjct: 448 QNGQNLLKQATYSTQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTK 507 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 +KNI + + + D +RQ+++N++SNA+KFT GG + ++ Sbjct: 508 DKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGG-IVISCYCNQANNASIN 566 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I D G G+++ + + F Q + G GLG+ I S+ G+ ++ Sbjct: 567 QVTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQ 626 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S+ G + +LP R Sbjct: 627 SEEGVGTKFQIMLPLKRAEAS 647 >gi|298528571|ref|ZP_07015975.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512223|gb|EFI36125.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 533 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 141/313 (45%), Gaps = 23/313 (7%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE-- 245 +++ ++ T + N I+ + + E+ ++ + +K A E Sbjct: 78 LPFILVSGSIGEETAVEAMKAGVNDYIMKDKLARLAPAVRRELKEAENRRAKKEAHEALV 137 Query: 246 ---------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + AKS FLA+MSHE+RTPLN I+G +++ + +EYI Sbjct: 138 AAKEAAEVASRAKSEFLANMSHEIRTPLNGIVGMLQLLSSTGLDT----EQEEYIRLGQS 193 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + Q L L+++ILDLS IEAGR + E+ S+ + + + A+EK I +DP Sbjct: 194 AAQRLTRLLSDILDLSSIEAGRMYIRENPFSISHVCESIHDLFIITAREKGIHFDISLDP 253 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGI 412 + V D + Q++ NL+ NA KFT G + + + +IS+ D G GI Sbjct: 254 QIPKKVMGDATRVSQILFNLVGNAFKFTDQGSISLDIRLAEQEQDRLLLHISVADTGTGI 313 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +I + F Q + QG GLGL + Q ++ G+ + S + +G + + Sbjct: 314 PPDKINELFQPFTQADGSYTRKYQGAGLGLVVVQRLLDLLEGRIEVDSIVGQGTTMHVSM 373 Query: 473 PNTRVLNFIPEDN 485 P +PE++ Sbjct: 374 PLK----TLPEED 382 >gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858] gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes Clip81459] gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194] gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262] gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858] gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262] gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194] gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816] gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A] Length = 591 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + +++ + + A EKNI + + + + D Sbjct: 424 LALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQIVINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1401 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 18/296 (6%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEE 244 +LA ++ L F + AEK E + A+ L ++ R +R +E Sbjct: 813 TLAYIIYMVLFFGALLLIRQRGIQKIRRQFIAEK-----EKQEARLLIEQERQEIRRMQE 867 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K++FL ++SHE RTPL+ I+ + ++ K+ + I ++ + LLNL Sbjct: 868 LDQLKTKFLTNVSHEFRTPLSLIMAPVNKMLTR-----ADQEQKQQLNMIRKNARRLLNL 922 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +N++LD ++E +L +I + E A+EK I+ D Sbjct: 923 VNQLLDFRKMEVQELKLHSKPGDIIKFIGEISQSFTDIAEEKEIDFVFDTTVDAMFTSFD 982 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIPT 419 + +++ NL+SNA KFT GG+V V + S I + D G GI + Sbjct: 983 HDKIERILFNLISNAFKFTPAGGQVSVLLNVDQQTANSDTSLEIKVIDTGIGIPPEKHSK 1042 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F Q + QG G+GL I + + HGG+ + S+ G I +P Sbjct: 1043 IFERFFQHDVPESMINQGSGIGLAITREFVKMHGGEITVESEPDHGSCFIIKMPLA 1098 >gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 764 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 13/241 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + ++ + Y I SG+ LL +IN++ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLSDTNL----SDEQQLYANTIKNSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEA + EL L V E +++LQ A++K + + D L + D Sbjct: 272 LDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422 +RQV+ NL+ NAVKFT+ G V + + S +++I+D G GI E ++ + Sbjct: 332 IRQVLTNLVGNAVKFTSE-GHVALQITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFG 390 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNF 480 F Q +G GLGL I++ ++ GG+ + S+ +G LP + Sbjct: 391 EFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELPLAEGAST 450 Query: 481 I 481 Sbjct: 451 S 451 >gi|17228884|ref|NP_485432.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130736|dbj|BAB73346.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 811 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 14/250 (5%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++ ++++ A+ N AKS FLA+MSHELRTPLN ILG +++++ + P E + +I Sbjct: 324 QAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSTLP---EQEQHHI 380 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + G HLL LIN+ILDL++IEA + EL + ++ + Q+RA +K+I Sbjct: 381 NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFV 440 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--------RGQY 402 + +L + D K +RQV+LNLL NA+KFT G+V + V Sbjct: 441 YEPASNLPIWLHIDAKRLRQVLLNLLGNAIKFT-DHGQVKLKVETIEESSTQKPVKHRIR 499 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I+D G GI + E+ + F Q K +G GLGL I + ++ G + S++ Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEK-KRQTEGTGLGLAITRQLVQMMGSDIHVTSQV 558 Query: 463 REGVEVIAIL 472 G L Sbjct: 559 GHGSTFWFEL 568 >gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453] Length = 409 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 8/302 (2%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 V ++ +G + +L F + Y + ++ +L + + ELE + Sbjct: 111 GVPIVTSSGEIYGSLCAFDHNFYEYSQEDIDLLLSLSAFFGDMLELESTIDELKQMEDEN 170 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + KS LA MSHE+RTP+N I+G S +++L ++ +E +EY+ I +S + LL Sbjct: 171 DRILQEKSELLAVMSHEIRTPMNGIMGMSALLQLTSL----DEEQREYVELIEQSSESLL 226 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++I IL+ S++E + EL L ++++ + Q K I + I + V Sbjct: 227 SMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVIGDEVPEKV 286 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTV 420 AD +RQV++NL+SNA+KFT+ G V V VG + + IS++D G GI + Sbjct: 287 TADANKIRQVLINLISNAIKFTSE-GEVSVAVGISPETQAIKISVRDTGIGIPVDRRHRL 345 Query: 421 LTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 SF Q A G GLGL I + + G+ + EG +P ++ Sbjct: 346 FKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEETSGEGACFTFTIPLIGMME 405 Query: 480 FI 481 + Sbjct: 406 PV 407 >gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] Length = 1468 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 167/397 (42%), Gaps = 20/397 (5%) Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + + + +LV IA G +L G L I +L + +++L+ F + Sbjct: 764 QAALAKRPILVEDIAAGYLTISSSLGAAGPVNLIVLPIIVEDQVLGVIELASLNRFTQVH 823 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK 221 FL + ++ I++ D L A+ L +SN ++ Sbjct: 824 RAFLEQLVETIGVNVNTIVANARTDSLLTESQRLAI-ELQVGQEELQRSNAELEEKAELL 882 Query: 222 DDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVI 274 ++E S ++ R+ E+ + KS FLA+MSHELRTPLN++L ++++ Sbjct: 883 ARQNRDIETKNSEIEQARQELEDRAKQLALASKYKSEFLANMSHELRTPLNSLLILAQLL 942 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 L EY IH +G LL LIN+ILDLS+IEAG+ +S ++ L ++ Sbjct: 943 AQNPARNLT-AKQVEYANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDY 1001 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + EK + + + + DE+ +RQV+ NLLSNAVKFT G V + + Sbjct: 1002 VEATFRPLTTEKGLRFDVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTET-GSVQLRI 1060 Query: 394 GWTS---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 + D G GIAE + + +F Q G GLGL I Sbjct: 1061 ERAGRMELLGVPGQETLAFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSI 1120 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ I A G+ S L EG LP + Sbjct: 1121 SREIAALFNGEIRAVSALGEGSTFSLCLPIADITPSA 1157 >gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1023 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 142/270 (52%), Gaps = 10/270 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E +V + ++ AE + AK+ FLA MSHE+RTPLN ++G ++E ++G Sbjct: 485 HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTSLGA- 543 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +EY+ I SGQ+LL L+N+ILDLSRIE+G+ L +SL + E I + + Sbjct: 544 ---EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPVSLKKLTSEVINLFRPM 600 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---- 397 A+EK + I I S+ + +D +RQ++ NLL N++KFT G+V + V Sbjct: 601 AEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK-GKVLLKVEAEKFPNN 659 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD G GIAE ++ + +F Q + G GLGL I++ + G+ + Sbjct: 660 KFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEII 719 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++S++ +G E + ++ IP E Sbjct: 720 VKSQVNQGSEFTLSILVEKLEYEIPAGIQE 749 >gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] Length = 465 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 L ++ FLAS+SHELRTPL I G+++++ + + + Y+ IH L +LI Sbjct: 233 LERNDFLASISHELRTPLTYIKGYADIVHKRNLSIEDRDK---YLNIIHEEANRLSDLIK 289 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++ DL++++ + + + I L D + + QEK +E+ + + AD Sbjct: 290 DLFDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVICPKE-AVIIADPT 348 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + Q+I NLL NA+K++ G + ++V YI ++DNG GI E ++P +L F + Sbjct: 349 RLEQIIFNLLDNAIKYSPPGAKTILSVNNKKKD-VYIKVRDNGKGIPEEDLPYILNRFYR 407 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + G GLGL I + ++ HGG +RSK +G E + Sbjct: 408 VDKSRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVF 453 >gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 955 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 113/477 (23%), Positives = 190/477 (39%), Gaps = 30/477 (6%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMW 75 + TG + P D + ++L I L++ N+ + W Sbjct: 188 LRVTGIRPIMVAPHLASLDSTLRVNGFKTLGVALLIGFFATLMLGNLAIYLYTGNSKYKW 247 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 +++ +A+ ++ +K + + L+ I + + Sbjct: 248 FVLSNLTFASFVATTNYQHLFVVKNLPTVIMTVGLVGQAIVATTVRQFFEISKHNKKINA 307 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI----MSMHVLDISLAG 191 L I A L ++ S AL + P + P+ + + I + Sbjct: 308 ILLICVWAVLGVSASAFALPEEIHPKLSIYAVMPLTLVVFLACFDCLKRDRVPALIFMGA 367 Query: 192 MLATALSFFTY---ITYHLFKSNVK------ILSCQAEKDDLIAELEVAKSLSDETRKRA 242 L L+ FTY I L + ++ L +E + R+ A Sbjct: 368 WLGATLAAFTYNWAIKGGLSFVHPSFMWVSFVVEAMCMSILLAYNIETLSAQ----RQAA 423 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E +S FLASMSHE+RTP+ A+LGF + ++ ++Y+ I+ + HL+ Sbjct: 424 EAMAQTRSSFLASMSHEIRTPMTAVLGFLNL----SLHLRAQGQLRQYLLKINAAANHLM 479 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 +IN+ILDL++IEAG+ EL + ++++ +L A E E+ + P L V Sbjct: 480 GIINDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNELVVSVQPGLPRRV 539 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDNGPGIAE 414 D ++QV+LNL SNAVKFT GG V + V + + D G GI Sbjct: 540 TGDSLRLKQVLLNLSSNAVKFTH-GGTVRLAVHAAADATPVHDAVTLRFEVSDTGIGIDP 598 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +P + TSF Q A G GLGL I++ ++ GG +RS+ EG Sbjct: 599 AVLPRLFTSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITVRSRPGEGSIFEFT 655 >gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 1138 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 182/412 (44%), Gaps = 16/412 (3%) Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W + + A + + + + T V Sbjct: 733 WEGKSALMLALTPAGASEAERQARDAESAAEASRLRMEIDELRSILETATDGVVVLGQEG 792 Query: 135 EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + T+ +SA+ L + L AV + + + Sbjct: 793 DIRTMNRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGLAGHGVASVLNDG--RE 850 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + + F I + + I + + + ++ AE N Sbjct: 851 VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 904 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ + Y EY GDI RSG+H+L+++N Sbjct: 905 AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 964 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++LD+S+IEAG +L A+ L + V E + ++Q +A + + I + S+ V AD++ Sbjct: 965 DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1024 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+ LN+L+NA++FT GG++ V+ + + + I+D G G+ E+ + F Q Sbjct: 1025 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1084 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + + G GLGLP+ +++ + QF I S EG V P+ RVL Sbjct: 1085 VTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSAPNEGTLVEVSFPSQRVL 1136 >gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 920 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 2/271 (0%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + + + DL E ++ E + E+ K FL+ +SHE RTPLN I Sbjct: 624 SFLDVTDMIKSQQDLQEVQEKLLAVEREKNEGLEQAMEMKDEFLSFISHEFRTPLNVINT 683 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + + E K Y+G I ++ L L+N ILD++R+ AGR +++ I ++ Sbjct: 684 AIQTL-NLVYSNQMTEKIKAYMGTIKQNTNRQLRLVNNILDITRVNAGRITINKKNIDIV 742 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + A +K + + + + D++ ++ILNLLSNA+KFT G + Sbjct: 743 FLTKAITESVYEFASKKGVRLTFVSKLTKKIIGVDDEKYERIILNLLSNAIKFTPAGKSI 802 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V + ++ I +KDNG GI +I + FGQ ++ +G G+GL + + + Sbjct: 803 IVNL-HSAKTNICIEVKDNGIGIPRNKIDVIFERFGQVESSLSRQAEGTGIGLSLVKRFV 861 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GG ++S L +G +LPN +V+ Sbjct: 862 EALGGSVSVKSNLGKGTTFKILLPNEKVIEE 892 >gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8] gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8] Length = 1987 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 151/356 (42%), Gaps = 14/356 (3%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + ++ + L + L + L V + + ++D A + Sbjct: 1625 AVFLFDGNLAYTLAAGELLGTYELGESDLLGAQAGTVLVGIE-GGRHPIVDRFEAALEGE 1683 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLAKS 250 + + +V L L I E + +K AEE N KS Sbjct: 1684 RTDRRIGVGGRTLRVHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKS 1743 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNET------YKEYIGDIHRSGQHLLNL 304 LA+MSHE+RTPL +ILGF+E+IE ET E+ G I +SGQ L++ Sbjct: 1744 SLLANMSHEIRTPLTSILGFAEMIEEETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDT 1803 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + +L+LSR+EAG +L+ + L + RE L+ RA+ + + + + AD Sbjct: 1804 LTGVLNLSRLEAGEMDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQAD 1863 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 GM+ V+ NL+SNA+K+T G + + V I ++D+G G+ +I + F Sbjct: 1864 GGGMQIVLRNLVSNAIKYT-DDGEIRLRVYR-ENGSAMIEVEDSGIGMDPEKIEDLFKPF 1921 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 Q S + +G GLGL + + + G + ++ +G + LP Sbjct: 1922 RQASEGMAREYEGTGLGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEESRET 1977 >gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 554 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTPLN +LG ++ + +E + P +E + I +SG+ LL ++N++ Sbjct: 182 KSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPPH----QRERLEVIRQSGESLLAILNDL 237 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 LDLS+IEAG+ EL ++ + ++ R A+ + + + P+ V+ D Sbjct: 238 LDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRGDPLR 297 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ++ NL+SNA+KFT G V VTVG SG + ++D G GI + + F Q Sbjct: 298 VRQILHNLISNALKFTEA-GSVRVTVGR-SGGALSLVVQDTGIGIPPEKAARLFQKFEQA 355 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + G GLGL I + + GG + S EG +LP R+ Sbjct: 356 DASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLPLKRI 405 >gi|163814849|ref|ZP_02206237.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759] gi|158449788|gb|EDP26783.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759] Length = 599 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 9/256 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + + A ++ FLA+MSHE+RTP+N ILG ++ M Sbjct: 197 VTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMAEDLQ 253 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y++ + LL LIN+ILD+S++EAG+Y++ E + + + + A Sbjct: 254 ADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQVPIAT 313 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +++ ++ V D + ++QV+ LLSNA+KFT+ G V V + I Sbjct: 314 NKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSE-GSVRVKIASMDDGENKI 372 Query: 404 ----SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G GI+E + + F Q + G GLGL I + I+ GG ++ Sbjct: 373 KIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNITVQ 432 Query: 460 SKLREGVEVIAILPNT 475 SK G I +P Sbjct: 433 SKEDIGSTFIVEIPLK 448 >gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 869 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 3/257 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E++ L +L + + AE+ NLAKS FL+SMSHELRTPL AILGF++++ Sbjct: 453 RDVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLM- 511 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E+ P K I I ++G +LL LINEILDL+ IE+G+ +S A+SL ++++EC Sbjct: 512 -ESSTPAPPPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQEC 570 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++M + +AQ +I++ + + D ++QVI+NLLSNA+K+ GG V + Sbjct: 571 VLMSEPQAQLHDIKVVFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQ 630 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +S S++D G G++ ++ + F + + ++G G+GL +++ ++ + GG Sbjct: 631 SSDDMMRFSVRDTGEGLSAEQLGQLFQPFNRLGQ-EANNQEGTGIGLVVSKRLVESMGGV 689 Query: 456 FLIRSKLREGVEVIAIL 472 ++S + G L Sbjct: 690 IGVQSTVGVGSVFWFEL 706 >gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1066 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 147/320 (45%), Gaps = 20/320 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L ++L A +F + + + + +D+L E AK L+ RAE Sbjct: 636 LTVALVRDAAGQPDYFISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLAS----RAEA 691 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +LAKS FLA+MSHE+RTPLN ++G ++++ + ++ +Y RSG L L Sbjct: 692 ASLAKSSFLANMSHEIRTPLNGLMGMMQLLKTTAL----DDEQLQYADMAIRSGGRLTRL 747 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 + +ILDLSRIEA R L + SL D+ A EK + + +P L V Sbjct: 748 LGDILDLSRIEAARLTLHVAPFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIG 807 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHV---TVGWTSGRGQY--ISIKDNGPGIAEGEIP 418 DE +RQ++ NL NA+KFT G V V ++ ++ D G GI + ++ Sbjct: 808 DETRLRQILFNLAGNAMKFTVA-GEVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLD 866 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN---- 474 V +F Q +QG GLGL I + + GG I S+L G V +LP Sbjct: 867 AVGEAFTQVESTYTRDQQGAGLGLAICRELTRLMGGSLTIESELGVGTTVWLMLPFALPR 926 Query: 475 -TRVLNFIPEDNHESTQYKC 493 V P D ++Q C Sbjct: 927 GEYVSIDAPMDAPPASQGAC 946 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 7/365 (1%) Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV 170 L +A+ + +L + T P ++ A + I ++ + A Sbjct: 14 LALALALPVVAFVLQWLLWSTLEPFGWILFFPAV-FFSSQIGGVAGGLAATAESAILGLC 72 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VA + V +S+ + + F + A ++ L Sbjct: 73 FVAPYYSFRVGSTVSLVSVLVFIGMGVLFSLTHARLGRARRAAETALAASREA-NDRLRG 131 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A ++ E + K+ F A++SHELRTPL ILG + + Sbjct: 132 ANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGS---LAKRLGAAETPPEARRD 188 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + R+ + LL + ++LD++R++AGR EL + + R + A+E+ I + Sbjct: 189 YRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGISL 248 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 P + D + +R+++ NLLSNA KFT GGRV + + T +++ D+GP Sbjct: 249 TVD-APRALTAEVDVEKVRRILQNLLSNAFKFTPDGGRVEMRLART-DGHFRLTVADDGP 306 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + V F Q + G GLGL IA+ HGG + + G Sbjct: 307 GIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFTV 366 Query: 471 ILPNT 475 LP Sbjct: 367 TLPVA 371 >gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 592 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE-YIGDIHRSGQ 299 ++ A+ F+A++SHEL+TP+ ++ GF+E + G +++E +E ++ I + Sbjct: 356 ELKKLEQARKDFVANVSHELKTPVTSLKGFTETLLS---GAVHDEQLREKFLTIISNESE 412 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L +LI+++L+LS+IE ++ L+ +++ ++ + +ML+ +AQ KNI +++ Sbjct: 413 RLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKNIHFSKEVIGDTV 472 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + AD ++QV +N+++NA+ +T G VHV V + ++D G GI++ EIP Sbjct: 473 -IEADAHRIKQVFINIINNAIMYTPNDGEVHVKV-IEKAETVIVEVQDTGIGISKKEIPR 530 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + A G GLGL I + ++ H + S++ +G Sbjct: 531 IFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTTFKMEF 583 >gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 869 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 11/269 (4%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + + + I + + A+ + ++ AE + AKS FLA+MSHE+RTPLN + Sbjct: 451 ERDALGTVIRSVGMVQDITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGV 510 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +++E G + K++ +S L L+++ILDLSR+EAG+ + Sbjct: 511 MGILQLLETSAEG----QEQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFR 566 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 L + + + + + A + +E+ +DP L S+ D ++QV+ NL+ NA KFT Sbjct: 567 LHETLVQVLDLFVPTAVQSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTT- 625 Query: 387 GRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G V+V + + S+ D G GI++ ++ + T F Q S + QG GLG Sbjct: 626 GYVNVEAYPLPAKHPGQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLG 685 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIA 470 L I + ++ GG + S+ G Sbjct: 686 LSICKHLVTLMGGNMAVESETGVGTTFSF 714 >gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 893 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 10/266 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + + L ++ AE + AK+ LA++SHELRTPLN ++G +++E+ + + Sbjct: 490 ISEHKQIEELLISAKEMAEATSRAKTELLATLSHELRTPLNGVMGGVQLLEMTDL----S 545 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY+ + S + L L+N++LDL+ +EA ++ + +L++ ++ I + + + Sbjct: 546 ADQEEYLQMVRTSATNELALVNDLLDLAGLEASGLKVESTPFNLLESIKLAITLHRSALE 605 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 + + + + SL+ V D + + Q++ NLL NA+KFT GG + + T G Sbjct: 606 TRGLPLVTSLPESLAQLVIGDGRRLTQIVSNLLGNAIKFTEQGG-ISLAADCTPCGGSEL 664 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GIAE ++ + F Q ++ G GLGL I + GG + Sbjct: 665 RLQVRVSDTGIGIAEKDLQRIFEPFVQADMSSTRRFGGTGLGLAICHRLAERMGGSIRVD 724 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485 S EG LP + E + Sbjct: 725 SIPGEGSSFTLELPFLAAAADLAETD 750 >gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 755 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 116/497 (23%), Positives = 197/497 (39%), Gaps = 32/497 (6%) Query: 12 VGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILP-LFVLLVANIGTWFTQNP 70 + I + + + P + + + + + +P F++ + Sbjct: 1 MQASIQRWLNTIKISDPVQREQAVLLQIMLIGLSIICFFTVPTAFIVSSTVGSAFRASLT 60 Query: 71 IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130 + +AV ++ + + + V +L+ + W L + P Sbjct: 61 SILILIFFVIAVMNLRQGHFRR--SVTLASSGLVVGLSIILLLEGLRNSAWILSAFMMPI 118 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 T + K + SI ++ L F L ++ S+ Sbjct: 119 TLSGLLTG-RKGIKTIAGASIIVIAILGGLQLFNLQFVGAYPRLGDLLPPTISTFIFSVL 177 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------ 244 + F + L ++ + Q +D L ++ + + EE Sbjct: 178 IVGFFFHRFSASLNDALSRALQRESELQQIRDKLEILVDQRTAALQDALHAVEEREGRLE 237 Query: 245 ---------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 N KSRFLA+MSHELRTPLNAI+ F+ ++ +E +E Sbjct: 238 KTNIELAAAKTAAEEANQLKSRFLANMSHELRTPLNAIINFTAFLDRYG---EFSERQRE 294 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + HLL LIN+ILDLS+IEAGR EL L I+ + ++K +E Sbjct: 295 LQERVLYNADHLLGLINDILDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLE 354 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + L ++ D+ +RQV+LNLLSNAVKFT G+++VT+ IS++D+G Sbjct: 355 LELDMPEELPTMVIDKVRIRQVLLNLLSNAVKFTEQ-GQINVTISQPDPETVQISVQDSG 413 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA + F Q + QG GLGLPI++ ++ HGG + S +G Sbjct: 414 IGIAPEHQQQIFEEFQQVQNEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFF 473 Query: 470 AILPNTRVLNFIPEDNH 486 LP + N +PE Sbjct: 474 FSLP---ITNKLPETTT 487 >gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1027 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 92/254 (36%), Positives = 144/254 (56%), Gaps = 7/254 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E A+ + +E R+ AEE + AKS FLASMSHE+RTP+NA++G S+V+ + N Sbjct: 617 ITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAVIGLSDVLAETPL----N 672 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ + R+ LL+LIN ILDLS+IE+GR+EL E L D+ +L+++A+ Sbjct: 673 PEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDLSDMAHGVCSVLRVQAE 732 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQY 402 +K + + ++D +L V D +RQ+++NL+ NA+KFT G V V+V R + Sbjct: 733 QKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQ-GFVKVSVQARDQQRTLW 791 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I D+G GIA ++ + F Q ++ G GLGL I++ ++ GG + S+L Sbjct: 792 FGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQLVGLMGGHIGVESRL 851 Query: 463 REGVEVIAILPNTR 476 EG LP Sbjct: 852 GEGSLFYFSLPLRP 865 >gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 785 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDLS+IEAG E ++L ++ R + + R Q Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQ 517 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + + D + QVI N L+NA KFT G + + Sbjct: 518 E-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VDNQCIRFY 574 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA ++ + F + S QG GLGL I + I+ GG+ S++ + Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGATSEVGK 630 Query: 465 GVEVIAILP 473 G +P Sbjct: 631 GSTFFFTIP 639 >gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 646 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 125/255 (49%), Gaps = 7/255 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +++ E L R AE N K F+A +SH+LR+PLNAILG+S+++ Sbjct: 394 SDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQ 453 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + I R+ Q L+ ++LD+SR+ G+ +L + L I+ I Sbjct: 454 LDETT---FTRALETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQVDLAAIIGVAIET 510 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A+ KNI + ID S+ + D + QV+ NLLSNA+KFT G++ V + +T Sbjct: 511 AYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT-D 569 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +I++ D G GI +P V + Q + + G+GLGL IA+ ++ HGG + Sbjct: 570 SEAHITVTDTGIGIKSEFLPYVFDRYRQADC--QHKQHGLGLGLAIARYLIELHGGAIHV 627 Query: 459 RSK-LREGVEVIAIL 472 S +G L Sbjct: 628 TSPGEGQGTTFTIKL 642 >gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 669 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 16/260 (6%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + +AEE + KS FLA+MSHE+RTPLNAI+G S+++ + +E + + Sbjct: 274 LIRAQVQAEEASRMKSAFLANMSHEIRTPLNAIMGLSQLLLRANL----PPQQRECVETM 329 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+ LL ++N+ILD SRIE GR E+ + + + ++ E ++ A ++ + + + Sbjct: 330 RAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQAADQQGLTLAIER 389 Query: 355 DPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQYISIK 406 DPSL V D ++Q++LNLLSNA+KFT GRV ++ + ++ Sbjct: 390 DPSLPRVVLCDPVRLKQILLNLLSNAIKFTPS-GRVTLSARRATANLGHEGPPRVTFAVH 448 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREG 465 D GPGI + F Q A+ G GLGL I+ ++ GG + + G Sbjct: 449 DTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGGSGLELDTSPGRG 508 Query: 466 VEVIAI--LPNTRVLNFIPE 483 LP + + PE Sbjct: 509 SVFSFTLALPEPQAAHTRPE 528 >gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] Length = 1400 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 6/253 (2%) Query: 223 DLIAELEVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + A + A+S + R+ E E + AK+ F +++SHE RTPL I+G E + G Sbjct: 329 HVAAGVASARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIVGPLEELRARPDG 388 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + +E + IHRS L L+N +LD SR+EAGR + + L +V E + + Sbjct: 389 V--DARAREELELIHRSALRLGKLVNSLLDFSRLEAGRMQAQYEPVDLAAVVAELASVFR 446 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 ++ + P V+ D +V+LNLLSNA+KFT G V V V Sbjct: 447 SAVEKAGLTFEVDCPPLPEPVYIDRGLWEKVVLNLLSNALKFTFD-GSVRVAV-RADEGH 504 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D G G+ E E+P + F + A + +G G+GL + + ++ HGG S Sbjct: 505 AVVAVADTGIGVPEQEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTISAAS 564 Query: 461 KLREGVEVIAILP 473 ++G +P Sbjct: 565 VEKQGTTFTLRIP 577 >gi|222147417|ref|YP_002548374.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221734407|gb|ACM35370.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 751 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 142/294 (48%), Gaps = 20/294 (6%) Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + G+L ++ F + KS + LE + + A+ Sbjct: 193 SAIMLGLLMASVIFLVVTLHRQLKSVRETSR----------RLETMTRELSDAYEAADSG 242 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS+F+A+M HE+RTPLNAILG +E++E L ++ + + I SG+ LL +I Sbjct: 243 NRAKSQFMATMGHEIRTPLNAILGMAELLE---YSQLPSDALQS-VKTIRSSGEALLEVI 298 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWA 363 NEILD S+IE G+ EL E A+ + + I ++Q R+ +++ ++ I SL V Sbjct: 299 NEILDYSKIEHGKLELEERAVDISSLAENTISIMQGRSDDQDNQLVLDIPVSLDALYVRT 358 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTV 420 D +RQV+LNLLSNA+KFT G V + + ++D G GI E + + Sbjct: 359 DPTRLRQVLLNLLSNAIKFT-QNGVVTLRLREFYRGSALMLRFEVEDTGIGIDETGLAKL 417 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGL I + I+ GG+ + S + G LP Sbjct: 418 FKPFSQVDASISRKYGGTGLGLTICKQIVEKLGGELGMSSTVGVGSIFWFELPV 471 >gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum] Length = 1966 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 24/287 (8%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + E + A++ +K+RFLA+MSHE+RTPL I G + + N Sbjct: 1270 INNHKLLEQRLKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDTPL----N 1325 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +Y I +S LL++IN+ILDLS++EAG ++ + ++ + +L A Sbjct: 1326 GEQLDYCHTISQSSDGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAV 1385 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-----HVTVGWTSG 398 K++E+ ++ V D +RQV+LN++ NA+KFT G V + Sbjct: 1386 AKDLELSFIVEDDVPPVVCGDRVRLRQVMLNVIGNAIKFTTK-GEVFSRWSVIKDAQVGE 1444 Query: 399 RGQYISIK--DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + + D GPG + + F Q + G GLGL I++ ++ HGG+ Sbjct: 1445 GEVMLQFECHDTGPGFDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRM 1504 Query: 457 LIRSKLREGVEVI----AILPNTRVLNF-------IPEDNHESTQYK 492 +S+ +G I LP + P ES K Sbjct: 1505 TAKSQKGKGSTFICSSKFRLPRNPTDSSTTPQAAVTPSAITESPGQK 1551 >gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW] gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW] Length = 911 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 15/324 (4%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI----- 225 AL+ ++ ++ A A+A ++L E +I Sbjct: 585 AGALADADLIRRAERLLAGAIGAASARVALASAVGRAEVGQPELLRMLDETSHVIEYSRR 644 Query: 226 -----AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 AELE A R E + K FL++++HELRTPL ++ SE++ Sbjct: 645 LEQKSAELERATEALSAANVRLMELDRMKDDFLSTVTHELRTPLTSVRALSEILYDTP-- 702 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L E ++++ I + + L LIN++LD+++IEAG + +++ + + RE + Sbjct: 703 ELPEEQRQKFLATIIKESERLTRLINQVLDMAKIEAGEIDWHIASLDIAALAREAADSTR 762 Query: 341 LRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSG 398 ++K + + + +L D + QV++NLLSNAVKF GGRV +++ + Sbjct: 763 QLFRDKGVALELDLPEGNLPPALGDSDRLIQVMVNLLSNAVKFAPAEGGRVRLSLRP-AP 821 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++ DNGPGIA V F Q A QG GLGL I + ++ GG+ + Sbjct: 822 HALEVAVDDNGPGIAPEYHEAVFEKFRQVGSAKTGKPQGTGLGLAICRRLVDGMGGRIWV 881 Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482 S G +P P Sbjct: 882 ESTPGAGATFRFRIPAAVRQAAAP 905 >gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 676 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 14/247 (5%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 R AEE + KS FLA+MSHE+RTPLNAILG ++++ + + ++ + + Sbjct: 279 LIRARVEAEEASRMKSAFLANMSHEIRTPLNAILGLTQILRKTAL----TDEQRDCVDTM 334 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 +G+ LL ++ ++LD SR+E GR E+ + + + ++ E +++ A E+ + + + Sbjct: 335 RSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEPLAAERGLTLCLER 394 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-------ISIK 406 DP L V D ++Q++LNLLSNA+KFT GRV + Y +++ Sbjct: 395 DPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQ-GRVTLYASRAREPMAYEGPVAVQFAVR 453 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ-FLIRSKLREG 465 D GPGI EG + F Q I G GLGL I+ ++ GG + S+ +G Sbjct: 454 DTGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLGGTGLSVTSQPGKG 513 Query: 466 VEVIAIL 472 L Sbjct: 514 SSFFFTL 520 >gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 781 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 13/265 (4%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 +++ + ++ A+ N AKS FLA+MSHELRTPLN ILGF++++E +E Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQ---SAELSEKELN 362 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + IH G HLLNLIN+ILDLS+IEA + EL + L +++ I M ++RA++K I+ Sbjct: 363 SVKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQ 422 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-------GQ 401 + + DP+L + ++ D ++QV++NLL+NA+KFT G+V V S Sbjct: 423 LIYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFT-DHGQVTFRVVLQSLPPDSTQIVCL 481 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GI G++ + F + S +G GLGL ++Q+I+ + G Q ++S+ Sbjct: 482 RFEVEDTGIGILSGQLEKIFIPFERVSDP-NRYVEGTGLGLALSQTIVQHLGSQIQVKSQ 540 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH 486 +G L + + P ++ Sbjct: 541 PGQGSLFWLELNLSVLWQEFPAESS 565 >gi|160940185|ref|ZP_02087530.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC BAA-613] gi|158436765|gb|EDP14532.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC BAA-613] Length = 852 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 10/258 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + ++ R+ A E + AKS FLA+MSH++RTP+NAI+G + + T Sbjct: 318 LRYYSMTRSQLHELEKARQTALESSKAKSEFLANMSHDIRTPMNAIVGMTAIA---TAHM 374 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + E + + I S +HLL LIN++LD+S+IE+G+ L+ ISL ++ + ++Q Sbjct: 375 DDREQVQSCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLQEVTEGIVNIMQP 434 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + + K +D L+ VW D + QV+LNLLSNA K+T GG + +++ Sbjct: 435 QVKAKKQTFDIHVDNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGAIRLSLSEEKSPK 494 Query: 401 ------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +I++KDNG G+++ + + S+ + A +G GLG+ I + I+ G Sbjct: 495 GENYVRIHINVKDNGIGMSQDFLKKIYESYSRADSARVHKTEGAGLGMAITKYIVDAMEG 554 Query: 455 QFLIRSKLREGVEVIAIL 472 ++S++ +G E Sbjct: 555 GIEVQSEIGKGTEFRITF 572 >gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1188 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 143/283 (50%), Gaps = 3/283 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + + L ++NV++ + ++L A+ R E+ + KS F Sbjct: 433 LMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAARLEQSSRYKSEF 492 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L +++++ G L E + Y IH S LL LIN+ILDLS Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +S+ ++ M + A +++ + + P + +D + + Q+ Sbjct: 552 KVEAGQVTVELETVSIDATLQALEEMFKPMAAARHLRLAFERLPGTPDTFISDGQRVTQI 611 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNAVKFT G V ++V T G I ++D+G GIA ++ + +F Q + Sbjct: 612 LRNLLSNAVKFT-EHGEVALSVAPTDGGMLRIDVRDSGIGIAPDKLDMIFEAFQQADGST 670 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S++ +G LP Sbjct: 671 SRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713 >gi|255528162|ref|ZP_05394988.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296185529|ref|ZP_06853939.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255508150|gb|EET84564.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296050363|gb|EFG89787.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 628 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 7/290 (2%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +F Y S + ++ + + + L ++E L +ETR E N + F +++SH Sbjct: 323 YFIYEGKQTILSILSDITSEKQVEKLEKDVEKNIKLLNETR----EFNKMITEFFSNISH 378 Query: 259 ELRTPLNAILGFSEVIELETMGPLNN--ETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 EL+TPLN I +V+ L E +Y+ + ++ LL LIN +LD++R ++ Sbjct: 379 ELKTPLNVIFSAVQVLNLYINKNEGENIEKQHKYLKVVKQNCYRLLKLINNLLDITRADS 438 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G +L +++ +V + + + + K I + D + D + ++ILNLL Sbjct: 439 GFLKLHTGRYNIVSVVEDITLSVVSYVESKGINLIFDTDVEEKVINFDADKIERIILNLL 498 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 SN++KFT GG+++V + G G IS+KD G GI E ++ + FGQ ++ + Sbjct: 499 SNSIKFTNPGGKIYVNMS-DIGNGVTISVKDTGVGIPEDKLQMIFERFGQVDKTLRRNSE 557 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G G+GL + +S + HGG ++SKL EG E I P E+N Sbjct: 558 GTGIGLCLVKSFVEMHGGTIEVKSKLGEGSEFIIKFPEIITEQQQSEENS 607 >gi|269102304|ref|ZP_06155001.1| sensory box sensor histidine kinase/response regulator VieS [Photobacterium damselae subsp. damselae CIP 102761] gi|268162202|gb|EEZ40698.1| sensory box sensor histidine kinase/response regulator VieS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1249 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 7/243 (2%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + +++AE A++ FLA+MSHELRTP+ +++G +++E ++ YI ++ Sbjct: 671 LIQAQEKAERAMQARTHFLATMSHELRTPIASMIGLIDILE----TKNPSQEQLNYIKNL 726 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S HLL L+N+ILD S+IEAG+ +L + + +I AQ K ++ Sbjct: 727 KSSTNHLLYLVNDILDFSQIEAGQLKLDYQPCRWLTEIGLSLINFAQEAQHKGVKFNLFW 786 Query: 355 DPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 P+ L+++ D + QVI NLLSNA+KFT G + V + T + + D G GI Sbjct: 787 QPTKLTTLTIDSIRVNQVINNLLSNAIKFTEA-GSISVYIELTQ-HSLLVKVIDTGIGIH 844 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E I + + F Q I G GLGL I + ++ G+ + S+L EG VI +P Sbjct: 845 EDNIKRLFSPFEQAEKTISRTYGGTGLGLSICKQLVEMMNGKIELHSQLNEGTTVIFKVP 904 Query: 474 NTR 476 ++ Sbjct: 905 YSQ 907 >gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 889 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 5/291 (1%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + + +F Y E+ E E R AE Sbjct: 447 IPVHFEVLYELWDMWFEVHAYPAEDGLGIFFRNITERKQAEQEREYLLMREQIARSEAER 506 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N K FLA +SHELRTPLN ILG++ +++ + T + I I R+ + + L Sbjct: 507 ANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNL---EEATRRRGIETIERNAKLQIQL 563 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I ++LD+SRI+ G+ L+ +++L++ + E + + L + KNI++ ++ ++ V D Sbjct: 564 IEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLAIEAKNIDVKTALNVNVCMVAGD 623 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+I NLL+NA+KFT G++ V + I I+DNG GI+ +P V F Sbjct: 624 AARLQQIIWNLLANAIKFTPPAGQIQVALERV-NNSAQIQIQDNGKGISSEFLPYVFEYF 682 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 Q I G+GLGL I + + HGG S G LP Sbjct: 683 RQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGATFTVNLPL 733 Score = 37.9 bits (87), Expect = 3.8, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 52/226 (23%), Gaps = 25/226 (11%) Query: 53 PLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK------IGEVYVW 106 L NI W+ N I M T + + ++ Sbjct: 145 MPLAGLSHNIPHWWLGNAIGIMAIAPTALLVFTPYFQSQGWLHRTEPLNSGFVSRNFRPS 204 Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGT---WTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 LL + LC + TL T + ++ + + + Sbjct: 205 LHLLLEFSAILLLCLAIATLTVAETNQNGFKLQQLSFLGFVPVLWAATRFGVTSGMLTSS 264 Query: 164 FLSFFPVVVALST--------QAIMSMHVLDI----SLAGMLATALSFFTYITYHLFKSN 211 F + L + VL + L + + Sbjct: 265 FCVLVTLFAYLVAYPKAMYLATFPVQAEVLHVHKLSLLVQCAVSLFVGIAITERSSIQVE 324 Query: 212 VKILSCQA----EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + + + + +L +L E EE + K L Sbjct: 325 LAVEKVRRGEYQSRAELSEKLIQLNESLVEINDCLEESHREKDELL 370 >gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5] gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5] Length = 740 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 128/294 (43%), Gaps = 5/294 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + L + N + + + ++ R A N AKS+ Sbjct: 177 IQTAFGPRWIAWRETLVRPNANQGAELQCVGRDVTDRAESEHALGLARDHAVSANRAKSK 236 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA SHE+RTPLN ILG S ++ + N Y + SG+ L++L+ E+LD Sbjct: 237 FLAVASHEIRTPLNGILGMSNLLLDTQL----NPEQAAYAKAVKDSGEALVSLVEELLDF 292 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAG+ +L L ++ E +L RAQ + IEI +D L V D +RQ Sbjct: 293 SKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQARQIEIASYVDERLPREVIGDAARLRQ 352 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V+LNL SNAVKFTA GG + I+D G GIA + F Q Sbjct: 353 VLLNLASNAVKFTAEGGVALIAEPGIWPNEISFLIRDTGIGIAPDAQQRIFREFEQAGEE 412 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I G GLGL I++ I+ GG+ + S + G +P P Sbjct: 413 IAREYGGTGLGLAISERIVRRMGGRIALESAIGRGTTFEVSIPLEAADTSAPAA 466 >gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] Length = 571 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + + D+ Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G+ + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] Length = 575 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 7/284 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + K S +E + E + + + +KRAE A F+A ++HELRTPLN Sbjct: 170 MWRDTIEKQFSLISEMINAAFERKYLLDKTLKEKKRAESSERATRDFVAMINHELRTPLN 229 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +LG +E++E + + K+ + IH+SGQ L +IN++LD S++ AG EL + Sbjct: 230 GLLGSAELMEDTEI----TDYQKKLLETIHQSGQMLRIIINDLLDFSKMSAGMLELKMAN 285 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTA 384 +V+ + + EK + I +L ++ D ++Q+++NL+ NA KFT Sbjct: 286 FKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLPQTLMGDIDRVQQILVNLIGNAFKFT- 344 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G + + VGW I + D G GI + + + F Q + + +G GLGL I Sbjct: 345 KSGHISLKVGWQKNALVLI-VSDTGCGIPQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSI 403 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + ++ G+ +S+L EG E LP V + ++ Sbjct: 404 CKLLVDAMSGELSFKSELGEGSEFQVKLPLEVVCEQRTHSSEDN 447 >gi|218709306|ref|YP_002416927.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio splendidus LGP32] gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid histidine kinase [Vibrio splendidus LGP32] Length = 1223 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 9/242 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G S + + + YI + S LL LI Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ ++ + L +++ ++ LRA ++ +E+ ++D + + + D Sbjct: 533 NDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGD 592 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421 + Q+++NL +NAVKFT G ++ ++V G ++ D+G G+ + + + Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLF 652 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 T F Q + G GLGL I++ + GG + ++L +G + TRV + I Sbjct: 653 TKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSFTI-ATRVSHSI 711 Query: 482 PE 483 + Sbjct: 712 QQ 713 >gi|254505580|ref|ZP_05117727.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] gi|219551697|gb|EED28675.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] Length = 682 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 G++ I L+ + K+ E+ +E R+ AE+ +AK Sbjct: 174 LGIILLCTIAMILIVSWLYFNQTKLSRDLTER----------TLNLEEARRLAEQSAIAK 223 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 +RFLA+MSHE+RTPLNAI+G S+ + + ++E K Y I+RSGQHLL LIN +L Sbjct: 224 ARFLANMSHEMRTPLNAIIGLSQ--KEHYLA--SDEQVKNYASLINRSGQHLLKLINSVL 279 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IE G L E +++ I+ +E F + + AD+ + Sbjct: 280 DLSKIEQGNVTLYEERFYCSELIDAAKIVFVEAGKEDVDVFFSHQLAADYLLMADKTKLL 339 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NL N++KFT G V V + S + +++ D G G++E ++ V F Q Sbjct: 340 QVITNLGYNSLKFTHH-GHVEVNLTLDSQLQRLILTVSDTGIGMSEAQLGQVFNEFTQAD 398 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 +I G GLGL I+QS++ GG+ + S+L +G +P ++ P+ + Sbjct: 399 DSISRLYGGTGLGLSISQSLIELMGGKIDVESELEKGTTFTVRVPVM-LMEQKPKVPTAA 457 Query: 489 TQYKC 493 T K Sbjct: 458 TGQKV 462 >gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1278 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 132/252 (52%), Gaps = 6/252 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I+E + + R AE N AKS FL++MSHELRTP+NAILGF +++E + Sbjct: 880 LRDISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGFGQLLE---IEA 936 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 NE +Y+ +I ++G HLL LINE+LDL+RIE+G LS +S +++ EC+ +++ Sbjct: 937 GLNEDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKP 996 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ + I I + AD ++QV++NLLSNA+K+ G V V V Sbjct: 997 IAQVRGITIN-DAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVLVQVA-VQDGFV 1054 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + + D G GI + F + + +G G+GL I++ +M GG + S+ Sbjct: 1055 RLEVSDTGYGIPATRRQELFQPFSRLGVEDAD-IEGTGIGLTISRRLMKMMGGAIGMDSE 1113 Query: 462 LREGVEVIAILP 473 G LP Sbjct: 1114 EGRGCTFWIELP 1125 >gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 915 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 137/252 (54%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + ++ AE+ + KS F+A+MSHE+RTPLN I+GF+E++ + + Sbjct: 379 ITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFTELLLETNL----D 434 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +T ++Y+ I++SG L ++IN+ILD S++E + +L+ + + ++V E ++ Sbjct: 435 DTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEELVSEAFNIVAYSNT 494 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 +K +E+ ID ++ VW DE ++QV +NLLSNA+KFT G + + V + Sbjct: 495 KKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEE-GEIVLYVKVLADLSEGK 553 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++D G GI + + + ++F Q +I G GLGL I+ I+ G + Sbjct: 554 KKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTISNQILELAGSVLQL 613 Query: 459 RSKLREGVEVIA 470 S+ +G + Sbjct: 614 ESEQGKGSDFFF 625 >gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL 4222] gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL 4222] Length = 588 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 352 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 409 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 410 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 468 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 469 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFE 527 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 528 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916] gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916] Length = 615 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 142/265 (53%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ NNE +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEEDCNNEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ E + + A+ K I I + + D + ++ILNLLSN++KFT GG + Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V SG YI +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I+S+L +G E I LP Sbjct: 561 EMHNGTVTIKSELGKGTEFIIKLPA 585 >gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 833 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 34/303 (11%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ K E + + A +S+E ++ AE K++FLA+MSHELRTP++ +L Sbjct: 265 QALKKTNRHLEETVRALQQANRAIRVSEENKRVAEASAEDKAQFLANMSHELRTPMHGVL 324 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ + + Y+ H SG LL L+N +LDLS+IE + L L Sbjct: 325 GMLSLLLETQLSS----DQQHYVEVAHESGNILLELLNNVLDLSKIEHNKLALERVEFDL 380 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 + E +++L A K +E+ + S+ V D ++Q++ NLL NA+KFT G Sbjct: 381 RQAIEEVVVILGESANSKLLELVVWQNASVPSRVVGDPIRLKQIVFNLLGNAIKFTTQ-G 439 Query: 388 RVHVTVGWTSGR----------------------------GQYISIKDNGPGIAEGEIPT 419 V ++ S + D G G++E Sbjct: 440 HVEISYAVISENTRRGVVDSAEADFQAQEQDVSESVGDELWIRFDVSDTGVGLSEDVQEK 499 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + +F Q G GLGL + + I+ GG + S+L +G + +P + Sbjct: 500 IFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSKFWFEIPFGKTPQ 559 Query: 480 FIP 482 +P Sbjct: 560 TLP 562 >gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1284 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 9/262 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++A+ +++AE +K+ FLA+MSHE+RTP+N +LG E++ L + + Sbjct: 546 ITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALTPL----D 601 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + + + SG LL +I++ILDLS+IEAG+ EL E +S D+V +L +A Sbjct: 602 EEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAH 661 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402 +K + + ID S+ + D +RQ++ NL NA+KFT G V V T+ Sbjct: 662 QKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQAAATADPTLI 721 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D+G GI + F Q + G GLGL I ++ GG+ + Sbjct: 722 RLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVERMGGRIGVE 781 Query: 460 SKLREGVEVIAILPNTRVLNFI 481 S G + R Sbjct: 782 SVPGRGSIFRFTVELARPPEPA 803 >gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 784 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 15/285 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 V ++ L A + ++ AE N AKS FLA+MSHELRTPLN ILG++ Sbjct: 276 VAEEKLLQAQEQLEATVLTRTLQLARAKEEAELANRAKSEFLANMSHELRTPLNGILGYT 335 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ + + + + IH ++LL LIN++LDL++IEA + ++ + L + Sbjct: 336 QLFKR---DEALSPNQLKGVDIIHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTAL 392 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 ++ I ++ +RA++K + + P L V DE+ +RQV+LNLL NAVKFT GG V Sbjct: 393 FQDLIHLIGVRAEQKGLRFLADLAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VT 451 Query: 391 VTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + V S + Q ++D G GIA + + F Q +G GLGL I Sbjct: 452 LRVERASTKAQPYRLRFVVEDTGIGIASDHLAGIFKPFQQV-RETGQFIEGTGLGLSITD 510 Query: 447 SIMANHGGQFLIRSKLREGVEVIAIL-----PNTRVLNFIPEDNH 486 ++ GG + S + EG + +L P + V E + Sbjct: 511 QLVQLLGGDLRVSSAIDEGTQFRLLLDLPDCPASTVPGLTAEADT 555 >gi|254438509|ref|ZP_05052003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198253955|gb|EDY78269.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 477 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 91/414 (21%), Positives = 150/414 (36%), Gaps = 23/414 (5%) Query: 66 FTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIK-IGEVYVWRIWLLVGQIAIGLCWTLL 124 + + + ++ LG + D + + + G+ Sbjct: 52 YFDPTAIFAYYGVVALTEMLDVHLGLQAKAWDGQDPVVGRQILKRIALNTAISGMAIAAF 111 Query: 125 TLVEPGTWT---PEYLTIYKSATLLIALSISA-LSNFMLPYAVFLSFFPVVVALSTQAIM 180 + T + + + A ++ + ++ + +A Sbjct: 112 IINIASQQTMVGHFTPLFFLFSGSIFAAMYNSQMIGILILRLSIYGLAFLYIAFLDVFRY 171 Query: 181 SMHVLD--ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + L F I+ + + + L L E Sbjct: 172 LPPLSSNIWLEFFTIIFVLYFIGDISVKFYVNQQERLEQM--------------KLIQEE 217 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 +R + KS+FL+++SHELRTPL +I+G E+I+ + G L + K IG R+ Sbjct: 218 NERTKAALEVKSQFLSTVSHELRTPLTSIIGSLELIKADPRG-LLPDNLKPMIGIAARNA 276 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q L LI+++LDL +IEAG + D+V E + A + I + Sbjct: 277 QRLAALIDDLLDLQKIEAGEMAFHFKPVDANDLVYEAVESTAGYASKLGIHVTTAPCGED 336 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + D + QV+ NLLSNA+KF+ GG V V V T IS+ D G GI G Sbjct: 337 CQIAGDRNRLVQVMSNLLSNALKFSDKGGAVKVRVE-TLSTRIRISVHDEGVGIPRGAKD 395 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 V F Q + G GLGL I + I+ H G S+L G Sbjct: 396 CVFGKFSQVDSSDARKVGGTGLGLNITKQIIGRHNGTVDYVSELGVGSTFYIEF 449 >gi|182624759|ref|ZP_02952540.1| sensor histidine kinase/response regulator [Clostridium perfringens D str. JGS1721] gi|177910156|gb|EDT72550.1| sensor histidine kinase/response regulator [Clostridium perfringens D str. JGS1721] Length = 1093 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|168216898|ref|ZP_02642523.1| sensor histidine kinase/response regulator [Clostridium perfringens NCTC 8239] gi|182381050|gb|EDT78529.1| sensor histidine kinase/response regulator [Clostridium perfringens NCTC 8239] Length = 1093 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|18310494|ref|NP_562428.1| sensor histidine kinase/response regulator [Clostridium perfringens str. 13] gi|18145174|dbj|BAB81218.1| two-component sensor histidine kinase/response regulator [Clostridium perfringens str. 13] Length = 1093 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|168209416|ref|ZP_02635041.1| sensor histidine kinase/response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213793|ref|ZP_02639418.1| sensor histidine kinase/response regulator [Clostridium perfringens CPE str. F4969] gi|170712555|gb|EDT24737.1| sensor histidine kinase/response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714707|gb|EDT26889.1| sensor histidine kinase/response regulator [Clostridium perfringens CPE str. F4969] Length = 1093 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|169343940|ref|ZP_02864934.1| sensor histidine kinase/response regulator [Clostridium perfringens C str. JGS1495] gi|169297942|gb|EDS80034.1| sensor histidine kinase/response regulator [Clostridium perfringens C str. JGS1495] Length = 1093 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 1155 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 4/283 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 445 LEQTNEQLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L+ E K + I+ +G LLNLIN+ILD++++EAG+ E+ Sbjct: 505 SLILAKLLAENAEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + +V M Q A K + K++P + ++ D + + Q++ NLLSNA+KFT Sbjct: 564 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTER 623 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V + V + + G +++D G GIA + + +F Q G GLGL I+ Sbjct: 624 -GQVSMNVSFQADSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 682 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + + GGQ + S +G ILP R + +S Sbjct: 683 RDLAHLLGGQINVDSSPGQGSVFSLILP-ERYAAEAEDVEPQS 724 >gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC 74-1112] Length = 787 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 12/265 (4%) Query: 216 SCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + E + ++ + E + AE+ + +KS FLA++SHELRTPL I+G Sbjct: 270 RYRNENVAICVLVDVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGN 329 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ + + + + ++ S LL +I++ILD S+IE+ + ++ S + Sbjct: 330 LDLLQTKELPKGVD----RLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRE 385 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ K + ++ I+P + + D ++QVI NLLSNA+KFT G + Sbjct: 386 VMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCI 444 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + V G I ++D G GI E+ + F Q ++ QG GLGL I + ++ Sbjct: 445 VLHV-RADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 503 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 + G + S+ G + +P Sbjct: 504 SMMDGDISVDSEPGMGSQFTVRIPL 528 >gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 562 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 L +S+F+A++SHEL+TPL +I GF+E + ++ T ++++ I + + L LI Sbjct: 341 ELMRSQFVANVSHELKTPLTSIKGFAETLR----IVDDSATREKFLDIIDKEAERLTRLI 396 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+IL LS IE+ ++ E + +++ A+ +N+ + + D S + D Sbjct: 397 NDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDR 454 Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 Q++LNL+ NAVK++ G V ++ G ++ I+DNG GI + +I + F Sbjct: 455 DKFYQLVLNLIENAVKYSKEKEGYVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERF 513 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + G GLGL I + I+ G+ ++SKL EG +P Sbjct: 514 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 560 >gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1309 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E+ + + + + AE+ + AKS FLA+MSHE+RTPLN ++GF++++ T+ P Sbjct: 646 ITEICLQRDELKKAKLVAEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTP--- 702 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T +Y+ +++S LL IN+ILD S+IEAG+ EL+ + + ++ + ++ +AQ Sbjct: 703 -TQHQYLTIVNQSANALLTTINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQ 761 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----G 398 K +E+ + P + ++ D ++QV++NLL NAVKFT G + + V TS Sbjct: 762 TKGLEVLLNVAPDVPRFIYTDSVRLKQVLVNLLGNAVKFTQQ-GEIELKVTATSVSEPGE 820 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++D G GI + +F Q + G GLGL IA ++ G Q + Sbjct: 821 GAIRFAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLEL 880 Query: 459 RSKLREGVEVIAI 471 S+ G Sbjct: 881 ISEPGAGSCFYFT 893 >gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 442 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 4/286 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ ++ + I++ A I E K + +R + + KS Sbjct: 158 LIIYVKDSLRSLSSPEINTLEMIVNQIAITIHQIQLEERLKD-LESENQRLHKTSQNKSD 216 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 +L+ ++HELRTPL ILGF++++ E GPL NE K+YI I SG+HLL L+N+ LDL Sbjct: 217 YLSHINHELRTPLTGILGFAKMLREELYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDL 275 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IEA R E+ I++ DI I ++ +A+E+ I + +I ++ D++ ++Q+ Sbjct: 276 SKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQI 335 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +LNLLSNA+KFT G V + V + I D G GI + + + F Q + Sbjct: 336 LLNLLSNAIKFTEK-GSVTLAVK-SDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHL 393 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +G GLGL +++ + HGG + S++ +G +P + Sbjct: 394 SRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIPIKPI 439 >gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521] gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521] Length = 572 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 L +S+F+A++SHEL+TPL +I GF+E + ++ T ++++ I + + L LI Sbjct: 351 ELMRSQFVANVSHELKTPLTSIKGFAETLR----IVDDSATREKFLDIIDKEAERLTRLI 406 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+IL LS IE+ ++ E + +++ A+ +N+ + + D S + D Sbjct: 407 NDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDR 464 Query: 366 KGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 Q++LNL+ NAVK++ G V ++ G ++ I+DNG GI + +I + F Sbjct: 465 DKFYQLVLNLIENAVKYSKEKEGYVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERF 523 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + G GLGL I + I+ G+ ++SKL EG +P Sbjct: 524 YRVDKS--RKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 570 >gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1155 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 4/283 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 445 LEQTNEQLSERTDALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 504 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L+ E K + I+ +G LLNLIN+ILD++++EAG+ E+ Sbjct: 505 SLILAKLLAENGEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 563 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + +V M Q A K + K++P + ++ D + + Q++ NLLSNA+KFT Sbjct: 564 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTER 623 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V + V + +G G +++D G GIA + + +F Q G GLGL I+ Sbjct: 624 -GQVSMNVSFQAGSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 682 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + + GGQ + S +G ILP R + +S Sbjct: 683 RDLAHLLGGQINVESSPGQGSVFSLILP-ERYAAEAEDVEPQS 724 >gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1039 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 14/276 (5%) Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + + + +++K +L+A+ + + ++ AE + AKS FLA MSHE+ Sbjct: 602 AALEQKVADLELARNNLESQKQELVAKS----ADLELAKETAEAASRAKSDFLAIMSHEI 657 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP++ ++G +++ + K Y S LL + N+ILD S++EAG + Sbjct: 658 RTPMSGMVGMIDLLRETPLTA----EQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELK 713 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 + + I +++ +AQ K ++I + P L + D +RQ++LNL++NA Sbjct: 714 AEAIDFDIEHTIGGAISLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNA 773 Query: 380 VKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 +KFT G + V + S I I D G GI + F Q +I Sbjct: 774 IKFTEQ-GAISVKASYHSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKY 832 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 G GLGL I + + GG+ +RS G Sbjct: 833 GGTGLGLAICKQLALMMGGEIGVRSGPEPGSTFWFT 868 >gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 1061 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 165/388 (42%), Gaps = 13/388 (3%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 +++ + + + G + + + + + A Sbjct: 359 RRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVNPAFCALVNIVKSDLLGQPLRAMAAPR 418 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + + A+ V + + ++ A + + + Sbjct: 419 WLSPLLSTMERAIAKRGLSDVHLVLRTPTGEQKYFHVLHFPVVYEASGAYEALACFILDE 478 Query: 211 NVKILSCQ---AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++++ Q L ++ + ++ A + AK+ FLA+MSHE+RTPLNAI Sbjct: 479 TERLVANQHMENINQRLEQLVDERTVELIQAKEEALAASRAKADFLANMSHEIRTPLNAI 538 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G + V + N + Y+ + SG+HLL +IN+IL+ SR+EAG+ +L + + Sbjct: 539 IGLAHV----ALAMEMNPNLRNYLQKMRASGEHLLEVINDILNFSRLEAGKLKLDQVEFA 594 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG 386 L+D+++ I ++ +A+ K + + +I P + + D + Q+++NL +NAVKFT Sbjct: 595 LVDVIQRAINLVSDKAEAKGLSLQVEIAPEISPWLKGDPLRLGQILINLCANAVKFTDQ- 653 Query: 387 GRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + + V + RG I ++D G GIA G + ++ F Q + +G GLGL Sbjct: 654 GCIQLLVQQKARRGDAINLIIDVRDTGIGIAPGLLASLFQPFHQVDNSNTRRFEGTGLGL 713 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIA 470 I +S+ + S++ +G Sbjct: 714 AICKSLADLMDAHLSVESEMGKGSCFRL 741 >gi|190576120|ref|YP_001973965.1| putative sensor histidine kinase protein [Stenotrophomonas maltophilia K279a] gi|190014042|emb|CAQ47682.1| putative sensor histidine kinase protein [Stenotrophomonas maltophilia K279a] Length = 742 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 142/312 (45%), Gaps = 13/312 (4%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 +++ V + + L + + AE+D L E L + Sbjct: 2 WVALLVALAAASISALLLGLRLRARNRALAQLQRERSLLAAERDQLRRTTERQGQLEQQL 61 Query: 239 RK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + AE LAK FLA+MSHE+RTPLN IL E+I +G E ++ + Sbjct: 62 LQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLATAS 117 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S Q LL ++++ILD SR+EA EL ++ +L D++ + ++Q A K + + ++D Sbjct: 118 ASSQQLLRIVDDILDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLGLQLD 177 Query: 356 PSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGP 410 PS+ V D +RQV+ NLL+NA+KFTA G+V + V I D G Sbjct: 178 PSVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVQLRVQRLGEGPAQHQLRFEIIDTGI 236 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + SF Q + G GLGL I + I+ G+ + S +G Sbjct: 237 GIDDALQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMHGRIGVLSTPGQGATFWF 296 Query: 471 ILPNTRVLNFIP 482 +P +V +P Sbjct: 297 EIPLLKVPGDLP 308 >gi|323494087|ref|ZP_08099203.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323311714|gb|EGA64862.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 716 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 21/296 (7%) Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + +++ AL+ I ++ + K+ E+ D +E +K AE+ Sbjct: 188 YTYLAVISAALAMMVGIISWMYLNQSKLSRDLKERTD----------KMEEAKKLAEQSA 237 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK+RFLA+MSHE+RTPLNA++G + + ++ + +I I+ SG+HLL LIN Sbjct: 238 TAKARFLANMSHEMRTPLNAVIG----LSHKEYYQGADDQTRSFIAMINNSGKHLLKLIN 293 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 +LDLS+IE G+ +L +++ + ++ +F + AD+ Sbjct: 294 SVLDLSKIEQGKMKLEHDCFYCSELIELSKTIFVDTSKPDVEILFASPVDHDYQLIADKT 353 Query: 367 GMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 + Q+I NL NA+KFT G ++ + VG S + + D G G++E ++ Sbjct: 354 KLLQIINNLSYNALKFTDSGYVDIQLSIEVGEESTEQSPSYLTLVVTDTGIGMSEEQLSK 413 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 V F Q +I G GLGL I QS++ GG + S+ +G E +P Sbjct: 414 VFEEFVQADDSITRRYGGTGLGLSICQSLVNMMGGTMEVDSEQDKGTEFRVSIPVQ 469 >gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1157 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE + AKS FLA+MSHE+RTPLN ++G+++++ G + I +G Sbjct: 663 QAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLD---GTDLGPAARRNADRIRTAGAA 719 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL ++N++LD S++EAG+ E+ ++ ++ + +++ A+ K + + + P L Sbjct: 720 LLTVVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPD 779 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVT---VGWTSGRGQYISIKDNGPGIA 413 + DE +RQ++LNLL+NA+KFTA GG V V+ T G +++D G GI Sbjct: 780 WIEGDEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIP 839 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI-- 471 + + F Q +I G GLGL I++S++ GG + S + G Sbjct: 840 TDKCDRLFRRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVASTVGHGSTFWFEAD 899 Query: 472 LPNT 475 LP Sbjct: 900 LPAA 903 >gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 762 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 12/247 (4%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 K F+A +SHELRTPL +I +++ +G L E E + + L+ Sbjct: 514 AIERMKDEFIAVVSHELRTPLTSIHTSLKLLATGLLGQLLAEGQ-EMLTVADENTDRLVR 572 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N +LDL RIE+G L +++ E + + AQ+ NI I + S+WA Sbjct: 573 LVNNVLDLQRIESGEVTLDAQECEAAELLDEAVESVLTIAQQHNIRIEAHAES--LSIWA 630 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---------TSGRGQYISIKDNGPGIAE 414 D + + + NLL NA+KF+ G V +TV T ++DNG GI Sbjct: 631 DPDYIVRALTNLLGNAIKFSPAGEVVCLTVKAVSSSLEKPSTDQEMALFCVQDNGQGIPH 690 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ ++ F Q + + G GLGL I + I+ HGG+ S+L +G +P Sbjct: 691 NKLDSIFERFQQVDSSDSRKKGGTGLGLTICRKIVEQHGGKIWAESQLGKGSRFSFTVPL 750 Query: 475 TRVLNFI 481 +L Sbjct: 751 APLLKES 757 >gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 575 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 156/369 (42%), Gaps = 34/369 (9%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 ++ A L + L++ + ++ V + + + I Sbjct: 109 LLFIPAVLTVTLALGWRDGLATLLMAYAAYVGTFVMTGAEWASVLPDVSIFTLIAGQVLA 168 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + F + +F++ + A ++AEE KS FLA++S Sbjct: 169 ATFVFAGARVFRTQMV----------------QAAIELQRKSEQAEEATRVKSEFLATVS 212 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLN +LG + V++ ++ P ++ + I RSG+ LL+ +N++LDLSRIE G Sbjct: 213 HEIRTPLNGVLGMARVLDDGSLRPDQSDQ----VQAITRSGEVLLSTLNDVLDLSRIEEG 268 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV---WADEKGMRQVILN 374 + L ++ + + A EK++E F +I P L DE + Q++ N Sbjct: 269 LMVVETRPFDLPAMINGVAQLYVITAAEKSVEFFIEISPDLDLTQKRVGDENRITQILHN 328 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNA+KFTA G V + +++D G G++E E+ V F Q + Sbjct: 329 LLSNAIKFTAEGRVDLVVSPGETPSDIRFTVRDTGIGMSEAEVRRVFERFTQADQSTSRK 388 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPN---TRV------LNFIPE 483 G GLGL IA + GG+ ++S+ G LP RV + P Sbjct: 389 YGGSGLGLCIASQLATLMGGRIDVQSEPGVGSCFTASLKLPAHDGARVQDGPEAMAVSPP 448 Query: 484 DNHESTQYK 492 N + K Sbjct: 449 ANTAARDLK 457 >gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 1128 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 162/373 (43%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWVAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + D S + + + +S + + +++ ELE + + Sbjct: 392 KVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 449 QNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPAD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI ++ Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEQL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 685 -----EEEIQATQ 692 >gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1015 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 6/242 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE KS FLA+MSHE+RTPLN +LGF+++ N+E ++ I SG Sbjct: 637 AAESLAKIKSEFLANMSHEIRTPLNGVLGFAQI---GYRNAENSEKARDSFAKIQLSGNR 693 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL +IN+ILD S+IEAG+ + ++ + L ++V + +L+ RA+ K IE+ ++ P L Sbjct: 694 LLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLRERARAKQIELQVELAPDLPL 753 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + +D M QV+LN+LSNAVKFT + G V ++V + D G G++ +I T Sbjct: 754 TCISDPLRMGQVLLNILSNAVKFTEV-GSVTLSVNCR-DGMLLFKVADTGIGMSAEQIGT 811 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q + G GLGL I++ I+ G+ I S G V LP + Sbjct: 812 LFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSIDSLPGVGTSVEFCLPYVKPEP 871 Query: 480 FI 481 + Sbjct: 872 SV 873 >gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 599 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F+A++SHEL+TPL I ++E + M N E K+++ I + Sbjct: 364 EKLENMRKEFVANVSHELKTPLTTIKSYTETLLEGAM--ENQELGKQFLNVIDNEADRMA 421 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+ ++L LS + + + + + L IV + ++ L + A+ K E+ K SVW Sbjct: 422 RLVRDLLQLSNADYQQTKWDKKEVDLNYIVEKAVLNLSVSAKNKEQELNYKGLREGVSVW 481 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE + QV+LN++SNA+K+TA GG + V++ T I I DNG GI + ++P + Sbjct: 482 ADENRIEQVLLNVISNAIKYTANGGCIDVSLEETQNH-ATIKITDNGMGIPKEDLPRIFE 540 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL IA+ I+ H G + S+ G V+ LP Sbjct: 541 RFYRVDKARSREMGGTGLGLSIAKQIIDVHEGMIKVDSRESGGTAVLIELPL 592 >gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 968 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 3/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E K+ F++ +SHE+RTPL AI G E++ + E ++ + + + LL Sbjct: 738 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEA-EQMLKIAVSNSERLLR 796 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362 L+N IL+L +++G+ L+ + +V++ + +Q AQ+ +IEI D + + Sbjct: 797 LVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKIL 856 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ + QV+ NLLSN+VKF+ G +V + V + +++KD G G+ ++ T+ Sbjct: 857 ADEETIIQVLTNLLSNSVKFSHAGTKVEIYVTM-GDKEIIVAVKDYGKGVPPHKLETIFE 915 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q ++ + G GLGL I ++I+ H G+ + S L G LP Sbjct: 916 RFEQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966 >gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 508 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 10/240 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +++AEE N KS FLA+MSHE+RTPLNAI+GFS ++ +E KEYI Sbjct: 270 ELLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDYI----QDEDTKEYIHI 325 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + Q LL LIN+ILDLSRIEAG E +E + + + E + + + I Sbjct: 326 IEENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDE-MQTMAKLKLPSEVSIRLL 384 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + K +RQV+ N LSNA+K T G + + ++D G GI Sbjct: 385 PGADYCIIHTVPKRVRQVLNNYLSNALKHTEE-GFIDIGYHLPQEDRIRFFVRDTGCGIP 443 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + V F + S +QG GLGL I I G+ + S +G E +P Sbjct: 444 PEKQKDVFERFVKL----NSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499 >gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 633 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 10/273 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 370 YQSPDPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 428 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + Sbjct: 429 VGFSDLL----MTVDDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMPKPVY 484 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ R E + P + AD + QVI N +SNA+KFT G Sbjct: 485 LYQFCAMMLQKMKDRVPEGVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKFTHR-G 543 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + + R + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 544 TITIGYQIDAARQLEMFVEDTGIGISAENQTAVFDRFMKVD----SFVQGTGLGLPLCKS 599 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 I+ GG+ + S+ +G LP + + Sbjct: 600 IIEKMGGRIGVTSEFGKGSRFWFTLPVSSCIPT 632 >gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492] gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492] gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 508 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 10/240 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +++AEE N KS FLA+MSHE+RTPLNAI+GFS ++ +E KEYI Sbjct: 270 ELLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDYI----QDEDTKEYIHI 325 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + Q LL LIN+ILDLSRIEAG E +E + + + E + + + I Sbjct: 326 IEENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDE-MQTMAKLKLPSEVSIRLL 384 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + K +RQV+ N LSNA+K T G + + ++D G GI Sbjct: 385 PGADYCIIHTVPKRVRQVLNNYLSNALKHTEE-GFIDIGYHLPQEDRIRFFVRDTGCGIP 443 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + V F + S +QG GLGL I I G+ + S +G E +P Sbjct: 444 PEKQKDVFERFVKL----NSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499 >gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 442 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 4/286 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ ++ + I++ A I E K + +R + + KS Sbjct: 158 LIIYVKDSLRSLSSPEINTLEMIVNQIAITIHQIQLEERLKD-LESENQRLHKTSQNKSD 216 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 +L+ ++HELRTPL ILGF++++ E GPL NE K+YI I SG+HLL L+N+ LDL Sbjct: 217 YLSHINHELRTPLTGILGFAKMLREELYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDL 275 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+IEA R E+ I++ DI I ++ +A+E+ I + +I ++ D++ ++Q+ Sbjct: 276 SKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQI 335 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +LNLLSNA+KFT G V + V + I D G GI + + + F Q + Sbjct: 336 LLNLLSNAIKFTEK-GSVTLAVK-SDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHL 393 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +G GLGL +++ + HGG + S++ +G +P + Sbjct: 394 SRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIPIKPI 439 >gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] Length = 571 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + + D+ Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGDINVTSELGVGTKIVITIP 568 >gi|328872878|gb|EGG21245.1| histidine kinase [Dictyostelium fasciculatum] Length = 1240 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 10/284 (3%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE-VAKSLSDETRKRAEEENLAKSRF 252 + + K+ L + + ++LE + R RA + K++F Sbjct: 617 TSLGFMVVFRDITASKAIQSSLEEANNQLSIKSQLEIQKNKELIDARDRALKAIKIKTQF 676 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 A++SHE+RTPLN ++G +E++ + + +E I +SG L ++ +++LD S Sbjct: 677 TATISHEIRTPLNGLIGMTEMLLTTNL----TKEQREIAETIQKSGDILHSVTSDVLDFS 732 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQV 371 +IE + EL I + + L + +K IE + ++ + D +RQ+ Sbjct: 733 KIEESKLELEMIEFDFIGCIENTLSTLSMSCVDKPIEFLLHFEDNVAIKIIGDPIRLRQI 792 Query: 372 ILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 ILN+ SNAVK+T G V + +S++D G GI + + F Q Sbjct: 793 ILNVGSNAVKYTNQGHIYTHVSILERVNGKIKIKVSVEDTGIGIPTEKRDRLFEPFSQVD 852 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAI 471 +I G GLGL I + G+ + S +G Sbjct: 853 ASITRRYGGTGLGLAICDRLTKLMNGEMTLEKSVEGQGSTFSMT 896 >gi|228938515|ref|ZP_04101123.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971394|ref|ZP_04132020.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978007|ref|ZP_04138386.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407] gi|228781668|gb|EEM29867.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407] gi|228788261|gb|EEM36214.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821113|gb|EEM67130.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 466 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK + I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKELHISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGG + I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 374 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 143/247 (57%), Gaps = 5/247 (2%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 EL ++ + + AE N AKS FLA++SHELRTPLNAILGFSE+I+ +T+ ++ Sbjct: 127 TELRQRETDLERAKNEAETANRAKSDFLANVSHELRTPLNAILGFSEIIKSDTL---DSG 183 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 Y +Y IH+SGQHLL+LIN+ILDL+ IE+GR+ +S ++L + + M++ AQ+ Sbjct: 184 RYPDYAAAIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIVEMVRPIAQD 243 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 I + + +V D + M Q +LNLLSNA+KF+ GG V ++VG G I++ Sbjct: 244 AGIRLRTTVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAAPTGGVCIAV 303 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G G+A I + F S ++G GLGL I +SI+ G+ I+S +G Sbjct: 304 VDTGVGMASETIKAIGQPF--ASPGGHVDKRGAGLGLAITKSIVGAMKGELEIQSTPGQG 361 Query: 466 VEVIAIL 472 + Sbjct: 362 TRAEILF 368 >gi|146341588|ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194394|emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 731 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 143/371 (38%), Gaps = 12/371 (3%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 +TLV + + ++ + + ++ + Sbjct: 215 GNVTLVGLDGIVRARASAGPTGVGSSLAGSPVMAAIQHRSSGSYTVKSLIDGIPRIYSFQ 274 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + F + + + + + ++ +R Sbjct: 275 RIKDQPLVVIVGQASDEIFAAFKRNRDRDLLVGGLLTVVIGIITILIARYQAGLAASRDA 334 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE A+S FLA MSHE+RTP+N ++G + ++ + S +L Sbjct: 335 AEAGTRARSEFLAMMSHEIRTPMNGVIGL----ADLLLSADLAPEQRKIATTLRESADYL 390 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS- 360 L L+N++LD S+++A R E+ L V +L RA+EK +++ I P + + Sbjct: 391 LQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQLTTSIAPDVPTY 450 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEI 417 V D +RQV+ NL+ NA+KFT G V V +G S+ D G GI + Sbjct: 451 VVGDPARLRQVLFNLVGNALKFTEAGSVHVDVRAEDLAGPNLTLVFSVADTGVGIPAEAV 510 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F Q +I G GLGL I + ++ GG ++SK+ EG + Sbjct: 511 GRLFKQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKVGEGSTFTFSI----Q 566 Query: 478 LNFIPEDNHES 488 + P+ + E Sbjct: 567 VQPQPQPDVEQ 577 >gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1681 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAILG S ++ + ++Y+G +H++ LL ++ Sbjct: 959 NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1014 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEA + ++ + L D++ ++ + +EKN+ + P L + D Sbjct: 1015 NDILDFSKIEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1074 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421 + Q+++N +NAVKF+ V ++ Q ++D G GI E + + Sbjct: 1075 GLRLGQILINYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQKQGVLF 1134 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 SF Q + G GLGL I + + GG+ S+L G L Sbjct: 1135 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185 >gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 650 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 152/354 (42%), Gaps = 17/354 (4%) Query: 128 EPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDI 187 P + + +S + A A + A + P A+ + + Sbjct: 13 VFARRFPRLVFMLRSLVVFTAAFCGAYGFIVGSRAESSGYNPHTFAIGASFLFA------ 66 Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD------ETRKR 241 LA ++ L + + +L E A++L + R Sbjct: 67 LACLGLAVQSMRLRWMRRSLHAVALHNEALADRNWELKDAEERARTLLESRGELLTLRDD 126 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A+ AKSR LA SHE+RTPLN I+G S ++ T+ P Y+ + SG L Sbjct: 127 ADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDTTLTP----EQATYVRAVKTSGDAL 182 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L+LI+E+LD S+I+AG+ EL +L ++ + +L RAQ + IEI +D L Sbjct: 183 LSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERLPAQ 242 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D +RQV+LNL NA+KFT+ GG + + I+D G GIA V Sbjct: 243 VIGDAARLRQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDTGIGIAPEAQARV 302 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q I G GLGL I++ I++ GG+ ++ S+ G +P Sbjct: 303 FREFEQADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIPL 356 >gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL S4-171] Length = 591 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + D++ + + + A EKNI++ + + Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRDQ 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL N1-067] Length = 591 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + D++ + + + A EKNI++ + + Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRDQ 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] Length = 464 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 148/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + T + Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 462 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L++ + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 211 ITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATEV----SE 266 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I R+ + LL LIN+ILDLS+IEAG E + + + +V E +R Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K++ + ++ D++ + QV N +SNA+KFTA G + + G Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAA-GSITIGYGMPENSYIRFY 385 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + F + S +QG GLGL I+Q+I+ G+ + S+L + Sbjct: 386 VTDTGTGISSENAQGIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVESQLSK 441 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 442 GSTFWFTLPFYK 453 >gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 812 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ + E + P + AD + QV+ N +SNA+KFT G Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + + + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I+ GG + S+L +G LP Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805 >gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 643 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 22/283 (7%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + +++ + E A +E +R E + KS FL+S+SHELRTPL + Sbjct: 368 LNRHLEQLVRERTEDLVNKA------RELEEANQRLRELDEMKSAFLSSVSHELRTPLTS 421 Query: 267 ILGFSEVI------------ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 ILGF++++ + E + + + + I G+ L LIN++LDL++I Sbjct: 422 ILGFAKLLHKEFTRNYLPLAQNEPLLVKKGQRIQNNLLIISHEGERLTRLINDVLDLNKI 481 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEK-NIEIFQKIDPSLSSVWADEKGMRQVIL 373 E+G + +++ DIV + + + + + +IDP+L V AD M+QV++ Sbjct: 482 ESGSMGWRDERLNMSDIVETAVQSVTGLFSQNPQVGLVSEIDPALPVVIADPDRMQQVLI 541 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI-K 432 NLL+NA KFT G V V G+ + I D G GI + + F Q A Sbjct: 542 NLLNNAAKFT-DDGSVTVRAFPRFGQ-VRVEIADTGVGIHPEDQNRIFEKFHQTKTATMG 599 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +G GLGL I + I+ ++ G+ + S+ +G I LP+ Sbjct: 600 DKPKGTGLGLTICREIVEHYSGRIWVESEPGKGSTFIFTLPSA 642 >gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 690 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 12/257 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + A++ ++AK FLASMSHE+R+PLN ++G + +++ + E + + I S Sbjct: 311 NRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETHL----TEEQIKMVKAIDTST 366 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 HL +I +ILD S+I A + EL A+ L+++ + CI + +A+EK+ I + SL Sbjct: 367 SHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQYIRLSVSQSL 426 Query: 359 SSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIA 413 +V+ AD ++Q+++NLLSNAVKFT + G + + + + I + DNG G++ Sbjct: 427 KTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKIMVSDNGIGMS 486 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +I + F Q ++ G GLGL I++++ GG + SK+ +G I LP Sbjct: 487 DDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVDKGSRFIVTLP 546 Query: 474 NTRVLNFIPEDNHESTQ 490 V P D ++ Q Sbjct: 547 LEIVN---PVDAQQTAQ 560 >gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp. PL2G6] Length = 439 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 7/273 (2%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + + Q +DL ++ + RAE AKS FLA MSHE+R Sbjct: 9 LLEEKSLALFQANRALQQLAEDLEQQVAERTAELQMALDRAEASTRAKSEFLAMMSHEIR 68 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+N ILG ++++E T+ +Y+ I SG+ LL L+N+ILD S+IEAG +L Sbjct: 69 TPMNGILGMAQLLETTTLDT----EQSDYLDAIRSSGETLLVLLNDILDFSKIEAGYLDL 124 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 L + + + + + A+ K++ + L + V D +RQV+ NLL+NA+ Sbjct: 125 ERQDFDLQEAIFSTLTLYRPMAEGKSLALDHTFAAGLPTYVRGDRTRLRQVLSNLLANAI 184 Query: 381 KFTAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 KFT+ G V V+V + ++++D G GI + + +F Q + G Sbjct: 185 KFTSEGRVHVDVSVRRLADLLMLDVAVEDTGIGIPHNRLDQLFRAFTQVDSSTTRRYGGT 244 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I+ + A G + S++ +G Sbjct: 245 GLGLAISARLCAAMDGDISVSSRVGKGSIFRFS 277 >gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 798 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 5/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA+MSHELRTPL+A++G+SE++ E E + + I + +HLL LIN++ Sbjct: 283 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPD-LRKIESAARHLLGLINDV 341 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+S+IEAGR L+ + + ++ + Q +K ++ L ++ D+ + Sbjct: 342 LDISKIEAGRLTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKL 401 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 RQ ++NL+ NA KF+ G + ++V G ++ D G G+ + +I + F Sbjct: 402 RQSLINLIGNAAKFS-EDGEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFS 460 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 Q + G GLGL I ++ + GG + S G LP Sbjct: 461 QADESTTRQFGGTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPA 509 >gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 1133 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 104/412 (25%), Positives = 184/412 (44%), Gaps = 16/412 (3%) Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W + + A + + + + + T V Sbjct: 728 WEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVVVLGRDG 787 Query: 135 EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + T+ +SA+ L +AL AV + + + Sbjct: 788 DIRTMNRSASALFDYDESDMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDG--RE 845 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + + F I + + I + + + ++ AE N Sbjct: 846 VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 899 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ + Y EY GDI RSG+H+L+++N Sbjct: 900 AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 959 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++LD+S+IEAG +L A+ L + V E + ++Q +A + + I + S+ V AD++ Sbjct: 960 DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1019 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+ LN+L+NA++FT GG++ V+ + + + I+D G G+ E+ + F Q Sbjct: 1020 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1079 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + + G GLGLP+ +++ + QF I S EG V P+ RVL Sbjct: 1080 VTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQRVL 1131 >gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus H19] gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus H19] Length = 554 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ EG IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549 >gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus D139] gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus D139] Length = 554 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDPQSLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ EG IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549 >gi|168207377|ref|ZP_02633382.1| sensor histidine kinase/response regulator [Clostridium perfringens E str. JGS1987] gi|170661247|gb|EDT13930.1| sensor histidine kinase/response regulator [Clostridium perfringens E str. JGS1987] Length = 1093 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + + D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDIECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1511 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 L KS FLA+MSHE+RTP+NAI+G S + + P ++Y+G I ++ QHLL +IN Sbjct: 779 LLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTP----RQRDYMGKIQQASQHLLGIIN 834 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S+IEAG+ + + L ++ +++ +A+ K +E+ + + + D Sbjct: 835 DILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVGDP 894 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVL 421 + Q+++N +NAVKFT G V + V + G ++D G G+ + +I + Sbjct: 895 LRLGQILVNYANNAVKFTEA-GEVGIRVRLIAEDGGEAVLRFEVRDTGIGLTQEQIARLF 953 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 SF Q + G GLGL I++ + G+ + S G Sbjct: 954 QSFSQADASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPGAGSTFWFT 1003 >gi|113477573|ref|YP_723634.1| periplasmic sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110168621|gb|ABG53161.1| periplasmic sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 750 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 155/342 (45%), Gaps = 25/342 (7%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 +A+ + L V L F I S+ L + + L++ ++ Sbjct: 175 AAILTYCLILVVLLIFIGEFYLTLLPVIRSIQTLKTAATKLDIGTLNY--HLDIQTGDEI 232 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 +I + +A + ++ R+ A+ N AKS FLA+MSHELRTPLN ILG++ Sbjct: 233 QQIAQQFNQMAVKLANSYYSLDFLEQKRQVADAANKAKSEFLANMSHELRTPLNGILGYT 292 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 E++ E K+ I IH+ G HLL LIN+ILD+S+IEA + EL AI L Sbjct: 293 EILSR---SEAWGEKEKKGIDIIHQCGSHLLTLINDILDISKIEARKLELQPQAIHLPSF 349 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 ++ ++ +R ++K ++ D +L + D K +RQV++NLL NA KFT G+V Sbjct: 350 LQGIGEIICIRTEKKGVDFVYLPDANLPEGIVTDPKRLRQVLINLLGNAAKFTEK-GQVT 408 Query: 391 VTVGWTSG-------------RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 V +S IKD G GI+ + + F Q K Sbjct: 409 FKVRIIDSMAEQKKDKAQIPQDNVRLSFQIKDTGIGISPDSLEKIFQPFEQVGEG-KRHS 467 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNT 475 +G GLGL I +I++ G ++S+L G P Sbjct: 468 EGTGLGLTITDNILSLMGSNIQVKSELGVGSTFTFEIDFPLA 509 >gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1118 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 19/263 (7%) Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + + K A+ + N K FLA +SHEL+TPL A+LG S ++ + +G L NE Sbjct: 384 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NER 442 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE- 345 Y IH+SG+HL+++IN+ILDL+R+E G+ EL+ S + + ++ + ++ + Sbjct: 443 QARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSEVKTLHNQP 502 Query: 346 --------------KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 ++ + I+P L + ADE +RQ++++LLSNA KFT G + + Sbjct: 503 SKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFTETSGEIGL 562 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V ++ D G GI E + + F Q + +G GLGL + +++ Sbjct: 563 RVNRWE-GWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARL 621 Query: 452 HGGQFLIRSKLREGVEVIAILPN 474 HGG S+ +G + +LP Sbjct: 622 HGGDVSFLSQEGKGSQFTLLLPP 644 >gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] Length = 919 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ A +++ +SL + AE+ N AKS FLA++SHELRTPL I+G E+++ T Sbjct: 422 DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 476 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE + + S LL +I++ILD S+IE+ + ++ + +V I Sbjct: 477 QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 536 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +K++ I+ I+P + V D ++QVI NLL+N++KFT G + + + Sbjct: 537 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 594 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y I D G GI E + + F Q S +SA +G GLGL I + ++ G + S+ Sbjct: 595 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 654 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494 G +P LN + + +C+ Sbjct: 655 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 691 >gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A] gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A] Length = 598 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + E +++ + ++ Sbjct: 349 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPQFLKVVQDETDRMI 406 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356 +IN++L LSR++AG +L+ +++ ++ + + +++ I + Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NA+K++ GG + + T +SI D G GI + Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 525 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 526 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582 >gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis HI4320] gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response regulator domains] (capsular synthesis regulator component C) [Proteus mirabilis HI4320] Length = 942 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ A +++ +SL + AE+ N AKS FLA++SHELRTPL I+G E+++ T Sbjct: 445 DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 499 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE + + S LL +I++ILD S+IE+ + ++ + +V I Sbjct: 500 QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 559 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +K++ I+ I+P + V D ++QVI NLL+N++KFT G + + + Sbjct: 560 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 617 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y I D G GI E + + F Q S +SA +G GLGL I + ++ G + S+ Sbjct: 618 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 677 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494 G +P LN + + +C+ Sbjct: 678 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 714 >gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 956 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 178/477 (37%), Gaps = 33/477 (6%) Query: 30 KMDFDREI-------ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82 + ++ +V++L ++ +L + + + + F + S + L Sbjct: 16 RPAWEARWQEENQKVTLKNVKTLAWIAMVLMMGASTLDHFTYPHLWHHFFIIRSAVALLE 75 Query: 83 YAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKS 142 + + +L+ + + + + + P Sbjct: 76 IGLMFTSNTAYGR--------RHYPALMLMVPLLPAVA---IAYMIFSSGDPGSPYYSGL 124 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 L+ + F + +A + I S S + + Sbjct: 125 TLCLVGFAFLFQWGFRESVLAVAITMAIYLAATLPHIGSATAPHGSFGQFFSNGVFLIMN 184 Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + S+V + E + + ++ ++ + E + K+ F ++++HELRT Sbjct: 185 SVVVISGSHVHQRIRRNEVISRYSLADN-QAELEQKNLQLVEMDRLKTDFFSNITHELRT 243 Query: 263 PLNAILGFSEVIEL--------ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 PL ++ + ++ G + + + I+++ LL LIN++LDL+ Sbjct: 244 PLTLMIAPLQRLQRLYPAGSPQSGNGGAPSSMLHDELTGIYQNALRLLKLINDLLDLASA 303 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 GR +S SL + + A + ++ + Q++ L V +D++ + +++LN Sbjct: 304 NVGRMRISHQRFSLRLFTGRLLQSVTNMAHQGDVAVHQQMPEHLEMVDSDQEKLEKILLN 363 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LL NAVKFT GG V + + T + D G GI++ +P + F Q ++ Sbjct: 364 LLFNAVKFTPKGGSVTL-ITNTVNDFLVFEVIDTGIGISQQNLPFIFDRFWQADSSVTRR 422 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR-----VLNFIPEDNH 486 G GLGL + + + GG+ S G + ++P TR V+ P ++ Sbjct: 423 HPGTGLGLALVKELATRMGGRVEAESIQGAGTTMRVLIPFTRNGDILVVGHAPREDD 479 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 27/340 (7%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 V + L + + D+ L + A A L Sbjct: 622 VTLMLPIMLVTARSDEDVRLTALRNGANDVMVKPFSLTEFHTRVHNLVHASLLQKELALR 681 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMS-------HELRTPLNAILGFSEVI--ELETMG 280 A+ RA E +L +S +A++ HE+ PLN ++ + Sbjct: 682 NAELEQTLAELRAAERDLIQSEKMAALGILTGGIMHEINNPLNFARSALFILDRRTGKLP 741 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + T KE + DI + +I+++ E + +A + + ++ I +L Sbjct: 742 EESKGTLKEVVSDIREGINRISTIISDLRTFCHPE----TVMAAACPVSEPIQSAIRILS 797 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF-----TAIGGRVHVTVGW 395 +E +I++ + + + V D + V+LNLL NA+ T + + Sbjct: 798 SPLKEFHIQLHEDVPADIV-VRGDRNQLTLVLLNLLKNAIDALASSMTPDSAPPQIWISA 856 Query: 396 TSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +S I I+DNGPGI + + F K A +G GLGL + I+ HGG Sbjct: 857 SSEGTATDILIRDNGPGIPATNLSRIFDPFF----TTKPAGEGTGLGLSVCYRIITAHGG 912 Query: 455 QFLIRSKLREGVEVIAILPNT---RVLNFIPEDNHESTQY 491 + G +P + +P ++ + Sbjct: 913 NISADAAPGGGTVFTIRMPRANLKKAAPVLPAESDAFADH 952 >gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 110/462 (23%), Positives = 190/462 (41%), Gaps = 8/462 (1%) Query: 11 DVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP 70 L+ L + RE+ L L + ++ + L A Sbjct: 11 AAALVDRAATSWLSRTGGGEAVRQRELAILRRLVLLSSAALVVAPIGLSAVTSPAVALPA 70 Query: 71 IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130 M L +++L ++ ++ I + + + G + + + Sbjct: 71 GVAMVCAAFLFSAVGSIALARQGSSAGIAAQSAEDFFLTVTPGLVLFLDPHGSVATIGGR 130 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 + + + A+ A + V Sbjct: 131 DRRDFLAWMRDPKGRGFLEQVHVSDRILFLQALDDLRRGEDAASVDLRLDRPSVSRDQR- 189 Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 + + + L+ + ++ + ++ + AE N AKS Sbjct: 190 ------QFAYLRMDMTARRDVDGELAAVIAQLRDVSIEQQLRAEAQNRAADAESANDAKS 243 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 RFLA++SHELRTPLNAILGFS+++ E G N+ +EY+ + SG HLL+++N +LD Sbjct: 244 RFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLD 303 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +S+IEAGRYEL A + VR C ML L+A+ K + + +I L + AD++ ++Q Sbjct: 304 MSKIEAGRYELILDAFDISSSVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQ 363 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +++NL+ NAVKFT GG V V +++ D G GI ++ + F Q Sbjct: 364 ILINLVGNAVKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIPADKLAMLGQPFVQIQND 422 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +G GLGL + + ++A HGG F I S+ EG + + Sbjct: 423 YTRRFEGSGLGLSLVKGLVALHGGNFAIASRPGEGTIITVEI 464 >gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis] Length = 507 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 D+ A +++ +SL + AE+ N AKS FLA++SHELRTPL I+G E+++ T Sbjct: 16 DISARVKMERSLQNMA-TAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT---- 70 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 NE + + S LL +I++ILD S+IE+ + ++ + +V I Sbjct: 71 QNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPL 130 Query: 343 AQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +K++ I+ I+P + V D ++QVI NLL+N++KFT G + + + Sbjct: 131 IAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYR-DEYYL 188 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 Y I D G GI E + + F Q S +SA +G GLGL I + ++ G + S+ Sbjct: 189 YFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQ 248 Query: 462 LREGVEVIAILPNTRVLNFIPEDNH----ESTQYKCY 494 G +P LN + + +C+ Sbjct: 249 ENVGSRFTVRIPLYGALNSSDGQTKYNLYKESTIRCF 285 >gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. glycinea str. B076] gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. glycinea str. race 4] Length = 645 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035] gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035] Length = 720 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 13/239 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ++G +E++ + E + + I SG+ LL +IN++ Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETEL----TEEQRLFTSTIKNSGEALLVIINDV 271 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEA + L L + E + ++Q+ A++K +++ D L + D Sbjct: 272 LDYSKIEAEKLILHAEPFDLERCIHELVTLMQVNARDKGLDVLVDYDLFLPTQFVGDPGR 331 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLT 422 +RQ++ NLL NAVKFT G V V V +++++D G GI +I + Sbjct: 332 IRQIMTNLLGNAVKFT-ENGHVLVRVTGVYSDTEGRASIHVTVEDTGIGIPPDKIDHIFG 390 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLN 479 F Q +G GLGL I+Q ++ GG+ + S+ G LP V Sbjct: 391 EFNQVDDERNRKFEGTGLGLAISQKLIRMMGGKIWVESEPGNGSIFGFSISLPVAEVGE 449 >gi|51473428|ref|YP_067185.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington] gi|51459740|gb|AAU03703.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington] Length = 498 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLATNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DIH +G+HLL++IN+ILDLS+ A + ++ + L ++ +I+++ Sbjct: 299 --DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + +E+ ++ + AD K ++QV+LNLLSNAVKFT GG V + + + Sbjct: 357 PRADQAEVELISRLPKEHIVINADPKRLKQVLLNLLSNAVKFTNTGGSVTIALEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L+ FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSEFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 S++ +G V Sbjct: 477 SQINKGTTVTITF 489 >gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 531 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + +AE + KS FLA+MSHE+RTPLN+I+GF+ +I + Sbjct: 289 IDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIAE----LDDR 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ + + + LL LI++ILDL++IEAG + + + + D ++ + ++ + Sbjct: 345 EERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QV+ N ++NA+KFT+ G++ + G Sbjct: 404 DKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSE-GQILLEYHPVEGTGQIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + TV F + + +G GLGL I +SI+ + GG S+L Sbjct: 463 SVTDTGMGIAPDAVATVFDRFVKL----NTFAKGTGLGLSICKSIIEHLGGTIGAESELG 518 Query: 464 EGVEVIAILPNTR 476 G P Sbjct: 519 VGSRFWFRHPCAE 531 >gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] Length = 1195 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 99/473 (20%), Positives = 186/473 (39%), Gaps = 58/473 (12%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 + I L+ A + W TQ + +A A + Sbjct: 479 SALIAMAVALVSAPLIAWATQGRYYIARRPEPVAGAPARTQRCVVCEHEYEAPDMARCPA 538 Query: 108 IWLLVGQIAI----------------GLCWTLL-------TLVEPGTWTPEYLTIYKSAT 144 + + W+ + + + Sbjct: 539 YRGAICSLCCTLDARCGDLCKPKASLAAQWSAALRWLLPRVVWRYLDTGLGHFLLLMLVI 598 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 + ++ L + + +A A+ S + +++ ++++ + Sbjct: 599 APLLAAVLGLPYHQELNTLAQALIDAPLAAPEMALRSGMLKAYLALLVISGIVAWWLVLA 658 Query: 205 Y------------------------HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + ++ AE+ L A E A+ +++ ++ Sbjct: 659 HKSRQVAQEESNRQTGLLLREIELHRQTDQALQTARQVAEQARLAA--EQARQVAEAAQR 716 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A++ N AKSR+++++SHELRTPLN+ILG+++++ P ++ + I R G+H Sbjct: 717 AADQANQAKSRYISAISHELRTPLNSILGYAQLMSE---DPGLPPQRQQAVHVIRRGGEH 773 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL+LI LD++RIE+G+ L + + D +RE + +L+A K + + +L Sbjct: 774 LLSLIEGTLDIARIESGKLTLEVAPMRFADGLREMASLFELQAAAKGLAFRFEPQGALPE 833 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V ADEK +RQ+++NLL NA+KFT G+V + V + I ++D GPG+ I Sbjct: 834 VVRADEKRLRQILINLLGNAIKFTTQ-GQVTLRV-RHAREMARIEVQDTGPGLTASAIER 891 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + A G GLGL IA+ + A GG+ + S+ G L Sbjct: 892 IFEPFTRAGAADT---PGAGLGLTIAKMLTALMGGELTVSSQPGVGSVFQVKL 941 >gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1588 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 103/420 (24%), Positives = 164/420 (39%), Gaps = 27/420 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + +G+ + + + + L + L I +L + + Sbjct: 795 RFRLGQSLVGQAARSKRVIAIDDVPGDYVALGSGLGRTAAASLVVLPIAVEDQVLGVIEL 854 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYITY 205 +++ F + FL V ++ I++ D L A L Sbjct: 855 ASMHRFTPVHRAFLEQLMETVGVNVNTIVANARTDELLGESQRLAAELQARSGELQVRQE 914 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L SN ++ A ++E ++ R+ E + KS FLA+MSH Sbjct: 915 QLQTSNAELEEKAALLASQNRDIETKNLEIEQARQELETRAQQLSLASKYKSEFLANMSH 974 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ L + + EY G IH +G LL LI++ILDLS++EAG+ Sbjct: 975 ELRTPLNS-LLILAQLLAQNSNRNLTPKQVEYAGVIHSAGSDLLQLIDDILDLSKVEAGK 1033 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 + +SL ++ +K +E + + + D+ +RQV+ NLLS Sbjct: 1034 MNVDPERVSLQRLLDYVEATFHPLTTQKGLEFSVRTASGMPGQMLTDDSRLRQVLRNLLS 1093 Query: 378 NAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT GG V +++ SG +KD G GI E ++ T+ +F Q Sbjct: 1094 NAVKFTETGG-VELSIEPAAPEELPLGVRDSGPALAFRVKDTGIGIPEQQLETIFGAFQQ 1152 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL I++ I GG +S L EG LP P + Sbjct: 1153 ADGTTSRKYGGTGLGLSISREIAQLLGGAITAQSALGEGSTFTLYLPIEHPDWADPPASD 1212 >gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus] Length = 359 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 11/253 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE AKS FLA++SHELRTPLN ++G SE+++ + N Y I LL Sbjct: 14 EEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL----NGEQSGYADSIRVCADTLL 69 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 ++IN++LD S++EAG+ + E ISL + + E + L E+ ++ ++++ V Sbjct: 70 SIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEMLV 129 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEI 417 D + Q+++NLLSN+ KFT G V V S+ D G GI + + Sbjct: 130 MGDPVRLHQILMNLLSNSYKFTPR-GSVTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 188 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN-HGGQFLIRSKLREGVEVIAILPNTR 476 + F Q + + G GLGL I ++++ N G + S+ +G V L + Sbjct: 189 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSLRFKK 248 Query: 477 VLNFIPEDNHEST 489 V D + + Sbjct: 249 VPKARAGDQQQRS 261 >gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 812 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ + E + P + AD + QV+ N +SNA+KFT G Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + + + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 723 TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I+ GG + S+L +G LP Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805 >gi|163788810|ref|ZP_02183255.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium ALC-1] gi|159876047|gb|EDP70106.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium ALC-1] Length = 942 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 90/435 (20%), Positives = 170/435 (39%), Gaps = 20/435 (4%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 L+ + F W + +Y G+ + S K + + L I Sbjct: 240 LMSTGAILDSVHSIGFVFWMFFSNCIYFLFWFFGRSFIQSKTKFPILDKLIVGLASIMII 299 Query: 117 IGLCWTLLTL-------VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 L L + E L+++++I+ + Y + Sbjct: 300 QIAVVIFLVLTNSMKPNFLSVGYQAEIHVFTNILGLILSIAIATRKDNFARYFGIGALIG 359 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + + L + + A S+ + +F + K +L+ Sbjct: 360 LSLLLYGSMWSAGWIKYPGF-----DAHSWAVFAQIVIFSFGIAYRRQVIMKKHNEEKLK 414 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 S+ + R + + + K+RF A++SHE RTPL I G ++ + Sbjct: 415 AQLSIVEMERIK--DLDKIKTRFFANISHEFRTPLALISGPINRAFKQSAKDEVITISNK 472 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I + L NL++++LDLS+IE+G+ LS LI +R I + A+ +NI Sbjct: 473 HFNIIQNNANRLQNLVDQLLDLSKIESGKVHLSLKQGGLIKFLRSIIYSFESMAERENIS 532 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + L S + D+ + +++ N+LSNA K+T+ G V T+ + + + I D G Sbjct: 533 LNTSFPEELDSAFYDKDKLEKIVTNILSNAFKYTSENGSVTTTIDY-NKNYLNLEITDTG 591 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + E+ + F + + E+G G+GL + + ++ H G+ + S +G Sbjct: 592 KGIDKEEVKRIFERFYRVEGS---EEKGSGIGLALTKELIELHNGKISVDSTKHKGTTFK 648 Query: 470 AILPNTRVLNFIPED 484 LP L +PE Sbjct: 649 VRLPI--TLESLPEA 661 >gi|108805571|ref|YP_645508.1| histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766814|gb|ABG05696.1| histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 257 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E N + F+A++SHEL+TP ++ +E +E + E + + + + + Sbjct: 18 ELERVNRIRRDFVANVSHELKTPATSLKLLAESLEQAI--EEDPEQARLFAAQLRKETER 75 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI--DPSL 358 L LI ++LDL+R+E+ + L +V + ++ A+EK IE+ K S Sbjct: 76 LARLITDLLDLARLESEERSEYPEIVDLRGVVMSVLARMRRVAREKGIELRWKRFGRASE 135 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 +V DE + ++ NL+ NAVK+T GGRV VT G + +I + D G GI ++P Sbjct: 136 YTVRGDETQLASMLTNLVDNAVKYTQPGGRVEVTGGC-ANGEVFIRVSDTGIGIPPDKLP 194 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F + A A G GLGL I + + NHGG+ + S EG LP Sbjct: 195 RIFERFYRVDKARSKATGGTGLGLSIVKHVAENHGGRVTVESVPGEGSTFTVYLPRA 251 >gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 1128 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 162/373 (43%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + Sbjct: 332 GVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWVAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + D S + + + +S + + +++ ELE + + Sbjct: 392 KVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQN---EELESNIQIIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 449 QNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAI-PASQKYQLDIIIKS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPAD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI ++ Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISANVV-DDHVRVQVVDTGQGIPAEQL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 685 -----EEEIQATQ 692 >gi|288957220|ref|YP_003447561.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909528|dbj|BAI71017.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 434 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 163/319 (51%), Gaps = 6/319 (1%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 LP + + P+V+ + + + L +L V L + Sbjct: 119 LPVSTLIDRQPLVI-EAATPLAEIGRRLARLKPSALATGFLVVEQGRYLGVGTVTGLMAR 177 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + + ++ +E R++AE AK+ FLA+MSHE+RTPL A++GF+E++E E Sbjct: 178 S-----AEQTDLRARQLEEARQKAERAIRAKTAFLANMSHEIRTPLTAMMGFAELLEQEV 232 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 +GP Y+EY DI SG+HL+ LIN++LDLS+ +A R EL E + ++ + + Sbjct: 233 LGPHAIPLYREYARDIAESGRHLMELINDLLDLSKADADRLELVEGTVDVVRVAIGAARL 292 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 L RA + I + L + ADE+ +RQ++LNLLSN VKFT G V + + Sbjct: 293 LAERAARHGVRIATTVPLDLPPLRADERKLRQMLLNLLSNGVKFTPADGVVTLGAHMAAD 352 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++S+ D G G+ E+ L +GQ A+ + G GLGLP+ + ++ HGG+ I Sbjct: 353 GALWLSVHDTGIGMTGEELAKALEPWGQIDSALARVQVGSGLGLPLTKRLIELHGGRLDI 412 Query: 459 RSKLREGVEVIAILPNTRV 477 S+ +G + + P RV Sbjct: 413 VSRCDDGTTMSLVFPPARV 431 >gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 374 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + + AE N K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ Sbjct: 116 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 175 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y EY DI RSG+H+L+++N++LD+S+IEAG +L +A+ L + V E + ++Q + Sbjct: 176 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 235 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + ++ V AD + ++Q+ LN+LSNA++FT GG++ V+ + + Sbjct: 236 ANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 295 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G G+ E+ + F Q S G GLGLP+ ++++ + F I S Sbjct: 296 LRVRDTGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSA 355 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 356 PNEGTLVEITFPSQRVL 372 >gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 591 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 4/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +S F+A++SHELRTP+ + G+SE + + + E E I+ + + Sbjct: 362 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDLEERNEITKIIYDESKRMGR 420 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362 L+ ++LDL+R+E+G L + + + A+EK+I + + + + Sbjct: 421 LVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLLFDSEFNDDAMIN 480 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ NL+ NA++ T G V V V IS++D G GI + ++P V Sbjct: 481 IDEDRIEQVLTNLVDNALRHTEE-GSVTVKVEQEP-TFAKISVQDTGHGIPQDDLPYVFE 538 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A ++ G GLGL IA++I+ H G ++ S L+EG LP Sbjct: 539 RFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTFYLP 589 >gi|332139982|ref|YP_004425720.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327550004|gb|AEA96722.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 941 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 31/407 (7%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVE--PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 W + A W + + P + + LL + + +++ V Sbjct: 419 WLRFAENVSFAN---WKVSYYFDKRPLLMSMSGYLLKDLLLLLALSAFGTFTGYVVAKMV 475 Query: 164 FLSFFPVVVALST----QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 ++ ++ + L++ F ++ L + ++ S + Sbjct: 476 GAPIRRLIRYIAAFNPEKRGGEKAPQRALHIQELSSLSDEFMHLESRLLNAFEELKSAKE 535 Query: 220 EKDDLIAELEVAKSLSDETRKRAEE-------------ENLAKSRFLASMSHELRTPLNA 266 + L EL E R AE+ N+AK++FLA+MSHE+RTP+N Sbjct: 536 VEQALNVELGELNQSL-EARI-AEKTDHLAKALKEAEAANVAKTQFLANMSHEIRTPMNG 593 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G E++ + K I RS +LL +++ ILD S+IE+G+ + + Sbjct: 594 IIGSCELMLDSELPEHVAARAK----VISRSAANLLMILDSILDYSKIESGKMRIDIQSC 649 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAI 385 ++ +++ + + A+ K +I +D + V D + Q+I NLLSNAVKFT+ Sbjct: 650 AIRELLESSCELYRHSAKAKEYDIHLNVDSGVPKVLDIDAGKISQIINNLLSNAVKFTSE 709 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V V V + + + + D G GIA ++ + F Q G GLGLPI+ Sbjct: 710 -GSVSVNVSY-AHHALKVVVSDTGVGIAPEKLDLIFEQFEQADSTTTRHFGGTGLGLPIS 767 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 + ++ GQ + S+L +G +P E + + K Sbjct: 768 KGLIELLDGQLFVESELGKGTRFTFHIPAAVGKEEEHEPDVDIVDVK 814 >gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter sakazakii ATCC BAA-894] gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894] Length = 973 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 9/267 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 476 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVD----R 531 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + +H S LL +I++ILD S+IE+ + ++ S +++ Q K + Sbjct: 532 LVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLG 591 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT I G + + VG T G ++D Sbjct: 592 LYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVG-TQGDYLCFRVRDT 649 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + ++ G + ++ G + Sbjct: 650 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQF 709 Query: 469 IAILPNTRV-LNFIPEDNHESTQYKCY 494 +P + L P + S + +C+ Sbjct: 710 TIRIPLWQAQLPPKPNVDGLSNK-RCW 735 >gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum] Length = 1969 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 10/250 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 +D ++AE N AK FL ++SHELRTP+N +L ++++E T+ T K Sbjct: 941 RKQLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDS----TQK 996 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ I SG +LL+LIN+ILD S+IEAG+ E+ + S++ ++ I ++ EK + Sbjct: 997 EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGL 1056 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----I 403 ++F IDP++ V D++ ++Q++LN LSN++KFT G++ + V + + Sbjct: 1057 DLFIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNH-GQIIIRVKLVTDDSTHSLIKF 1115 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D+G GI + + SF Q +G GLGL I++ + GG ++S+ Sbjct: 1116 DVEDSGIGIKTEHLNPLFASFSQIDSGNSRKYRGTGLGLSISKRLCKMMGGDVKVKSEFG 1175 Query: 464 EGVEVIAILP 473 G +P Sbjct: 1176 VGSTFSFTIP 1185 >gi|253567906|ref|ZP_04845317.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251841979|gb|EES70059.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 641 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 24/289 (8%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 +L +L L + + + +L ++ + RAEE N Sbjct: 372 ALVVILVLGLCISLFYYFRTKRLKDDLL--------------KSEKDLRVAKDRAEESNR 417 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHE+RTPLN+I+GFS+V+ +G E + Y I + LL LIN+ Sbjct: 418 LKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLIND 474 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSR+EA R L+ ++ + R+ + + + +++ + D + D + Sbjct: 475 ILDLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQR 533 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 M+QVI+NL+SNA KFT G++ + S+ D G GI + + V F + Sbjct: 534 MQQVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEK 592 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL I + I+ G I S+ G I P Sbjct: 593 L----NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFIFSHPLK 637 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 77/359 (21%), Positives = 158/359 (44%), Gaps = 10/359 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 +G W LL + + +L A+ + +S+ L ++ + + Sbjct: 330 VMGTTWALLVELPEKEAFARIHQLEKLFFFAMLTAIVLVFISSHWLSNSITAPL--LRLT 387 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + + + + +S + ++ D ELE Sbjct: 388 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITL---IRDQNNELEQNLK 444 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + + + + K FLA+ SHELRTPL+ ++G +E + GP+ ++ + + Sbjct: 445 VISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQ-KSQRRQLEM 503 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SGQ L NL++++LD ++ G ++++ A++L VR + + K + I + Sbjct: 504 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 563 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 I L V ADE+ + Q++ NL+ NA+K+T+ G++ ++ + I + D G GI Sbjct: 564 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSE-GKIILSSTVLENQ-IRIQVVDTGQGIP 621 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + Q + + + QG GLGL I++ ++ GG + S+ G L Sbjct: 622 AEQLEHIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 680 >gi|330980744|gb|EGH78847.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 645 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 +L + ++ I A +L +++ A+ LS + + +AI Sbjct: 152 VLVGMSSEAFSRRQQEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQG 211 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 M + + + H+ + E + + + +TR+ A Sbjct: 212 D----YHTPMPVSDDAELGALARHINNRAENLHRASLE-------QQRSVAQLIQTREEA 260 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ N AKS FLA MSHELRTP+N +LG +++E M EY S +HLL Sbjct: 261 EQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLL 316 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SS 360 +IN+ILD SRIE ++ +L ++V A ++ + + I P L + Sbjct: 317 RVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRTLLLELHIQPGLETLN 376 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGE 416 V D +RQ+++NL+ NA+KFT G+V V W + + ++D G GI Sbjct: 377 VIGDPTRIRQILVNLIGNALKFTEQ-GKVCVDARWAMLDNELLHFTCAVQDGGIGIDAER 435 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + ++ +F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 436 LESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 493 >gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 4/234 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + F+A++SHELRTP+ AI GF+E + + + T + + IHR + + Sbjct: 295 RLEQIRRDFVANVSHELRTPVAAIQGFAETLLEGVIR-EDPATAEHFAQVIHREAERMAR 353 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ ++LDL+R+E+ L L D + + R + + + + P VWA Sbjct: 354 LVQDLLDLARLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWA 413 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTV 420 D + QV NLL NA ++T GG V V V ++D G GI +P + Sbjct: 414 DRHRLDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRI 473 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + I+ HGG S+L G + +P Sbjct: 474 FERFYRVDPGRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIPL 527 >gi|229057029|ref|ZP_04196423.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603] gi|228720306|gb|EEL71882.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603] Length = 466 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EKN+ I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 444 ESEKGKGTTVSIKL 457 >gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] Length = 1389 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 7/244 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K FL+ +SHELR PLN++LG+S++++ + + T + + I RS Q +LI ++ Sbjct: 1007 KDEFLSILSHELRNPLNSMLGWSKLLQKKQF---DQATINKGLAAIERSAQAQAHLIKDL 1063 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+SRI AGR + + L+ ++ + +++ A+ KNI+I + P+ S+ D + Sbjct: 1064 LDISRISAGRLRIDAQKLDLVSVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRL 1123 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QV NLLSNA+KFT GG+V +++ +T + Q I I D G GI+ +P V F Q Sbjct: 1124 QQVFWNLLSNAIKFTPSGGKVTISLDYTDFQAQ-IQISDTGYGISADFLPHVFERFRQAD 1182 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN--FIPEDN 485 + + G+GLGL I + ++ HGG S+ +G LP +P Sbjct: 1183 GSRTRSNPGLGLGLSIVRYLVELHGGTIDAESQGEGQGATFTVRLPLQAPQQQISLPIST 1242 Query: 486 HEST 489 +T Sbjct: 1243 EPAT 1246 >gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 493] gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493] Length = 630 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E + +AE + AKS F+A++SH+LRTP+N ILG +++ + Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I D+ S LL L+ +ILD +R+E G+ EL S +L +V + + Q Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K I+I D SL S+ ++ +R++ LNL+ NAVKFT G++ VTV + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI + ++ T+ F + + S +G+GLGL I + ++ N GG+ + S Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSI 468 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG +P P + E+ Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495 >gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 697 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 142/240 (59%), Gaps = 4/240 (1%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + A AKS FLA+MSHELRTPLNA++GFS+++ + + E + ++ Sbjct: 458 ELENAMIAALSAEKAKSTFLATMSHELRTPLNAVIGFSQILMAK--DDMPKEKIRTFVEK 515 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+ SG+HLLNL+N ILD S+IE+GR L++ I L + + E I++++ A +K+IEI +K Sbjct: 516 INISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFINETILLVENEALKKDIEIIKK 575 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + S+ ADE+ ++QVILN+LSNA+KF+ ++++ ISI D G G++ Sbjct: 576 GFFEI-SLSADEQLLKQVILNILSNAIKFSNQNSAINISYKNDEENHI-ISICDEGVGLS 633 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ + F Q +A +G GLGL I+Q I+ H G ++++ +G +P Sbjct: 634 QEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELHNGNIEVKTQSGKGSCFYISIP 693 >gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell surface physiology and symbiosis [Sinorhizobium meliloti 1021] gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 1134 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 104/412 (25%), Positives = 184/412 (44%), Gaps = 16/412 (3%) Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W + + A + + + + + T V Sbjct: 729 WEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVVVLGRDG 788 Query: 135 EYLTIYKSATLLI--------ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 + T+ +SA+ L +AL AV + + + Sbjct: 789 DIRTMNRSASALFDYDEADMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDG--RE 846 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN 246 + + F I + + I + + + ++ AE N Sbjct: 847 VIGREAAGGFIPLFMTIGRLSSSNGYCAV------IRDITQWKRTEEELRNAKRAAETAN 900 Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ + Y EY GDI RSG+H+L+++N Sbjct: 901 AHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVN 960 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++LD+S+IEAG +L A+ L + V E + ++Q +A + + I + S+ V AD++ Sbjct: 961 DLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDR 1020 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+ LN+L+NA++FT GG++ V+ + + + I+D G G+ E+ + F Q Sbjct: 1021 SIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQ 1080 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + + G GLGLP+ +++ + QF I S EG V P+ RVL Sbjct: 1081 VTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQRVL 1132 >gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp. NAS-14.1] gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp. NAS-14.1] Length = 713 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 D+ +E + L D R AE N AKS FLA MSHE+RTP+N I+G +EV+ + Sbjct: 189 ARDITETVEYQRKLVD-ARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTAL- 246 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + Y+ I S + LL +IN++LD SRIEA R + + L + +E +++LQ Sbjct: 247 ---TQDQRLYVDTIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQ 303 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A +K +++ D L + D +RQV+ NL+ NAVKFT G + + Sbjct: 304 PLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFT-QNGHILIRATGLPDA 362 Query: 400 G-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G ISI+D G GIA I ++ F Q S +G GLGL I Q ++ GG Sbjct: 363 GAGNVLIKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGG 422 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481 + + S+ G LP + Sbjct: 423 EIWVTSEHGVGSCFGFELPLKAQEDSA 449 >gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 407 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 143/287 (49%), Gaps = 5/287 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLA 248 +L+ L + K+ + + + LI ELE + + E + Sbjct: 113 ILSIILRNAIRLHQSETKAQLAYSQLKESHEKLIRSNDELERQRQQIQLQNLKLLEVSRL 172 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FL+++SHELRTP+NAI+GF++++ L++ + + I + + L L+NE+ Sbjct: 173 KSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS-VQTDMLKRILNNAKDLSMLLNEV 231 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD S+I++GR L L +V + ++ + K + + +ID + V+ D + Sbjct: 232 LDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSLSVEIDLENTLVFNDPVRV 291 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 RQ+++NLLSNA+KFT G V V V TS ISI+D G GI+ + + +F Q Sbjct: 292 RQILINLLSNAIKFTER-GCVWVRVTETSKSRIAISIRDTGIGISNQDCEHIFEAFRQVD 350 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I S++ GG+ ++ S+L G LP Sbjct: 351 QGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGSLFTVELPRQ 397 >gi|269966421|ref|ZP_06180506.1| sensor protein LuxQ [Vibrio alginolyticus 40B] gi|269829008|gb|EEZ83257.1| sensor protein LuxQ [Vibrio alginolyticus 40B] Length = 858 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 RK AE+ A++ FLA MSHE+RTP+N ILG +++++ E I + SG Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + + K + + + Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKGVNLVIENKIDP 587 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SN+VKFT G V + + I D G GI Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGADNSVLVVEITDTGIGI 646 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I +S++ G +RS+ G + + Sbjct: 647 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 707 PVKDRERVLTPL 718 >gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] Length = 855 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 10/266 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ S R++AEE ++ FLA MSHELRTPLN ILG S++++ ++ + +E Sbjct: 462 EAEQQSRLAREQAEESARLRADFLAKMSHELRTPLNGILGASQLLKQNSL----TQEQQE 517 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + SG+HLL ++N+ILD S+IE G++ + S ++ +V + +EK +E Sbjct: 518 LVNVLCSSGEHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEKGLE 577 Query: 350 IFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---YISI 405 + + + +D+ + Q++ NLLSNAVKFT G + + + G ISI Sbjct: 578 LIIECAIEPEIRLHSDQIRLNQILFNLLSNAVKFTHQ-GSICIKLALIQQGGIDKLMISI 636 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIA ++ + F Q G GLGL I S++ G+ ++S++ G Sbjct: 637 EDTGIGIAATDLQRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEVGYG 696 Query: 466 VEVIAILPNTRVL-NFIPEDNHESTQ 490 + P V+ + + +T Sbjct: 697 TRFDLLFPIRIVVNEELSDAEQTNTD 722 >gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 662 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 137/274 (50%), Gaps = 17/274 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E+ K L + + KS F A +SHELRTPLN I+G ++++ + N + Sbjct: 142 ELEKELLQLKNEELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLE----VMTNPHHA 197 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +Y+ I SG HL+ ++N++LD+S+IE+G+ + E+ I+L ++++ ++ + + +K I Sbjct: 198 DYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKGI 257 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQY 402 ++ + + V D+ + Q++ NL+ NA+KFT+ G V + + + + + + Sbjct: 258 QVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSE-GEVSIEITFVAPVPSADQAEQ 316 Query: 403 IS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I +KD+G GI + + + + Q S G GLGL I + ++ GG + Sbjct: 317 IQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISV 376 Query: 459 RSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 S+ EG +LP P S ++ Sbjct: 377 NSRWGEGTIFNFVLPLKLAPEIEP--LTNSPDFR 408 >gi|255014099|ref|ZP_05286225.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 791 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 9/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E K L E + A N AK+ FL+ MSH++RTP+NAI+G + + + + Sbjct: 261 IKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDIRTPINAIVGMTAIA---GLHMDDQ 317 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I S + LLNLINE+LD+S++E+ + L+E A + +++ +M+Q + Sbjct: 318 MRIADCLKKITISSKLLLNLINEVLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFE 377 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----- 398 K + + + D + ++Q +LN+L+NA+K+T G++ +TV Sbjct: 378 AKKQKFQIHVTKIKHECLIGDVQRIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGY 437 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I++ DNG G+ + V F + QG GLG+ I++ I G L+ Sbjct: 438 GQFEITVTDNGIGMKPEFLEKVFEPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILV 497 Query: 459 RSKLREGVEVIAIL 472 S+ +G + Sbjct: 498 ESEYGKGSKFTMRF 511 >gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 737 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 12/285 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETR---KRAEEENLAKSRFLASMSHELRTPLNA 266 + + I E D IA + + LS E + + AE N AKS FLA++SHE+RTPLN Sbjct: 195 TVLVIRFLFQEAGDNIAARQALEHLSQELKDTAREAESANQAKSDFLATVSHEIRTPLNG 254 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG +E++ + + +Y+ IH SG LL LI+++LD S+IEAG E+ Sbjct: 255 VLGMTELLRERELDGTS----HQYVETIHESGSQLLTLISDLLDFSKIEAGHLEIERETF 310 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 SL ++ + +L+ RAQ ++E+ + PS+ D +RQV+LNLLSNA+KFT+ Sbjct: 311 SLQALIDSLLRLLEPRAQ--HVELISDVAPSVPSHSLGDAGRLRQVLLNLLSNALKFTSR 368 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G V + V G + ++D G GI + + + F QG+ A+ G GLGL I+ Sbjct: 369 -GSVTLIVKPMRGDWMHFEVRDTGCGIEDADPQRLFQPFYQGASAVHYQ-GGTGLGLAIS 426 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + ++ G+ + S EG LP + Sbjct: 427 KRLVEAMQGRIGVSSPAGEGSRFWFELPLPSASETPATAPQQEAD 471 >gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 967 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 27/291 (9%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTP 263 + +LI E ++ E +R EE L K +FLA+MSHE+RTP Sbjct: 271 RTVLLNLIDEANQTRNELLEANRRLEESVLRTQLMAEEAREANAAKGQFLANMSHEIRTP 330 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +N ++G ++++ + ++ ++Y+ I SG++LL +IN+ILD S+IEAGR EL Sbjct: 331 MNGVIGMADLLLETDL----DQEQQKYVQTIISSGRNLLKIINDILDFSKIEAGRLELEH 386 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 L +++ E ML AQ +E+ I P + D + +RQV++NLL NAVKF Sbjct: 387 EEFELAELLEELGCMLGPEAQAAGLELTLSIAPDGPTRLKGDPQRLRQVLVNLLGNAVKF 446 Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T GG V + S++D+G GI + I ++ F Q + G Sbjct: 447 THEGGEVILESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEPFSQVDGSSVRRYGGT 506 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLGL I+ ++ GG+ ++S L EG + +L PE S Sbjct: 507 GLGLSISNHLVGRMGGRINVQSTLDEGSTFWFDI----ILEKQPEQLSSSP 553 >gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium botulinum H04402 065] Length = 464 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + T + Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 SICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V ++ + I +KD G GI++ ++P V F +G+ G+GL I Sbjct: 379 GLVELSTKYKEE-YITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|313677456|ref|YP_004055452.1| integral membrane sensor signal transduction histidine kinase [Marivirga tractuosa DSM 4126] gi|312944154|gb|ADR23344.1| integral membrane sensor signal transduction histidine kinase [Marivirga tractuosa DSM 4126] Length = 359 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 77/358 (21%), Positives = 154/358 (43%), Gaps = 19/358 (5%) Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 ++L+ALSI ++ L + +++ + S ++ I L + ++ Sbjct: 7 GVSILLALSIGIVTTAFLSLLEGVGTTALILTFILSSSSSYLLISIVLEFLFFKEINKLY 66 Query: 202 YITYHLFKSNVKILS----------CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + L + + ++ + ++ + + DE ++ A + Sbjct: 67 EVFNKLGEKDYSFVNDLETQKSFNPLRKINQEIFSYAANKQQEIDELKRMA----TYRRE 122 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA +SHEL+TP+ A GF + + + + +++ +S L L+N++L L Sbjct: 123 FLADVSHELKTPIFAAQGFVYTLIDGAV--KDKKVRGKFLKKAAKSLDGLEMLVNDLLTL 180 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQ 370 S IEAG + I L+ +V + + + +KN+ + +V AD + + Q Sbjct: 181 SHIEAGEITMHFEEIDLLALVEDVFDQFEGKTDKKNMSLQLDKSYEGPINVIADYQRIYQ 240 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 VI+NL+SNA+K++ + V + + I+I+D+G GI+ I + F + + Sbjct: 241 VIVNLISNAIKYSDENTEIVVGFEI-NQKEVTIAIQDHGAGISPEHIKRIFERFYRIDKS 299 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF-IPEDNHE 487 G GLGL I + I+ HG + S + +G LP + +P + E Sbjct: 300 RSKERGGTGLGLAIVKHIIEAHGSSVSVTSTVGKGSLFSFKLPVEKEPEPYVPIADEE 357 >gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1134 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 7/350 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185 EP PE SA L + + + A + + A I++ + Sbjct: 631 FEPSPIGPEGPPCALSAHLGRQVICTDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 690 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 691 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 750 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K FLA++SHELRTPLNAILG+S +++ + P + I RS + +I Sbjct: 751 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 807 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 808 DDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCDGELWFFGD 867 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT GG V V + + ++D G GIA +P V F Sbjct: 868 AGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAAEFLPHVFDRF 926 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 Q G+GLGL I++ ++ HGG S G +LP Sbjct: 927 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 976 >gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1300 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 24/309 (7%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + V+ + +L + + ++++AE + KS FLA+MSHE Sbjct: 861 YKLLESKQSQIQVQNAELLGHRQNLEKMVATRTRELEVSKEKAERSDRLKSAFLANMSHE 920 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G E++ E + + + Y I +S + L+ LI++ILDLSRIE+G Sbjct: 921 IRTPMNAIVGLLEIVHKEDL---PEDERETYAEVIRQSSRTLMTLIDDILDLSRIESGEA 977 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEK---NIEIFQKIDP----------SLSSVWADEK 366 L + ++ E + + +++ ++ + D + D Sbjct: 978 TLQLQPCRVDEVCEELYSLFRYVTKKESDGDVVLKLVRDGVEGSLLNEARDEFCLEFDPV 1037 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVL 421 ++Q++ NLLSNA+KFT G + G+ S + D+G GI + + + Sbjct: 1038 RLKQILTNLLSNAIKFTEKG---EILFGYDSENLGSEVRIRFFVSDSGVGIPQDHLEKIF 1094 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F + +G GLGL I++ + G + S++ +G A V Sbjct: 1095 DRFHKVEDPDGRVHRGTGLGLTISKRLSEMMSGVIEVNSEVGKGTCFSATFTRPIVECEQ 1154 Query: 482 PEDNHESTQ 490 D E+ + Sbjct: 1155 GPDQSETPE 1163 >gi|229010689|ref|ZP_04167887.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048] gi|229132194|ref|ZP_04261051.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196] gi|229166233|ref|ZP_04293992.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621] gi|228617178|gb|EEK74244.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621] gi|228651242|gb|EEL07220.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196] gi|228750583|gb|EEM00411.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048] Length = 466 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EKN+ I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 444 ESEKGKGTTVSIKL 457 >gi|91224005|ref|ZP_01259268.1| sensor protein LuxQ [Vibrio alginolyticus 12G01] gi|91190916|gb|EAS77182.1| sensor protein LuxQ [Vibrio alginolyticus 12G01] gi|188039120|gb|ACD47122.1| LuxQ [Vibrio alginolyticus] Length = 858 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 412 PHLRMAAQGATLTGVNVPIGDKVYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLA 471 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 RK AE+ A++ FLA MSHE+RTP+N ILG +++++ E I + SG Sbjct: 472 RKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----ETEEQNNQIDVLRHSG 527 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + + K + + + Sbjct: 528 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKGVNLVIENKIDP 587 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SN+VKFT G V + + I D G GI Sbjct: 588 NVEIFTDQVRLNQILFNLVSNSVKFTPS-GSVRLHAELEQFYGADNSVLVVEISDTGIGI 646 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I +S++ G +RS+ G + + Sbjct: 647 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITM 706 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 707 PVKDRERVLTPL 718 >gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1009 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD 186 L + + L+ + +I + + + Sbjct: 153 YSVMVTLVNSLVVTTALWLIFSWAIRFRLSDAVTQVARA-----------VRNWRFQRRN 201 Query: 187 ISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV----AKSLSDETRKRA 242 + + + + +S +++ + +L LE + + A Sbjct: 202 LLVEPISYPYQDELGELVKAFNESRMQLSDSMQDLAELNQNLEAIVTVRTQELQQAKDAA 261 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 EE AKS FLA+MSHE+RTP+NA+LG ++ + P T Y+ + LL Sbjct: 262 EEATSAKSEFLANMSHEIRTPMNAVLGMLYLLLKTDLSP----TQHNYLAKAQGAAHSLL 317 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-V 361 IN+ILD+S+IEAG+ ++ L ++ + + +A++K IE + D S+ + Sbjct: 318 GTINDILDISKIEAGKIDIESVEFGLDAVLGQLTDAIGYQAEQKGIEFLIRYDGSIPPFL 377 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEI 417 D + QV+LN+ NAVKFT G+V + TS + ++D+G GIA Sbjct: 378 IGDPLRLGQVLLNVCGNAVKFTEQ-GQVELGFLSTSQTEVGLTLQVYVRDSGIGIAREVQ 436 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVE--VIAIL 472 T+ F Q + G GLGL I++S++ GG+ I S+ +G L Sbjct: 437 NTLFKKFTQADQSTTRRFGGTGLGLVISKSLVELMGGRIWIEDSQPGKGTTICFTVQL 494 >gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R] Length = 389 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +V + +++AEE N KS +A+M+HE+RTPLNA++GF+ ++ + Sbjct: 143 ITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAVVGFASLLS----IIDDE 198 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +EYIG I + +HLL L+N+++DLS IE+G ++ S + L +++E + +A+ Sbjct: 199 KEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAE 258 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 N+ + + S + ++ D + Q++ +LL NA+KFT G V Sbjct: 259 TNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTK-GTVRWGYQEKENGQIRFY 317 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + + F + S QG+GLGL + + I+ G + S++ E Sbjct: 318 VTDTGCGIPNDKKEVIFERFVKLD----SFTQGLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 465 GVEVIAILP 473 G +P Sbjct: 374 GSTFWFTIP 382 >gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 701 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 153/368 (41%), Gaps = 25/368 (6%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 + W ++ L + K A + +++ + + P+ Sbjct: 344 IGWGVIILQQEHEALENEKLFLKLAIAIAIIAVLGVGGLTWILTSRI-IQPITHLTVAAE 402 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + + L + E L L+ + + Sbjct: 403 TLCNGEWNQRVNINRKDELGILAKAFNQMAW----------ELQKLFTNLQSKNEEAQKA 452 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R AEE + AKS FLA+MSHELRTPLNAI+G+S+++ E + + + + I+ +G Sbjct: 453 RTEAEEASKAKSLFLANMSHELRTPLNAIIGYSDMLAEEFLEIELDNFIPD-LQKINSAG 511 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL L+N IL++S IE+G+ +L ++ IV++ + LQ A+++ + + Sbjct: 512 KHLLLLVNNILNVSNIESGQIQLDLELFNIETIVKDVVNTLQPLAEKRANILTVNCPEDI 571 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIK 406 +++ D Q + ++LSNA KFT GG V++ V + + Sbjct: 572 GTMYGDVIKTHQCLFSVLSNASKFT-EGGYVNLEVYRHRNNHQEESEIMSGEEWIIFKVS 630 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G++ +I V +F Q + G GLGL I + GG + S+L +G Sbjct: 631 DTGIGMSPEQIGKVFQAFTQADESATRRYDGSGLGLAITKKFCQMMGGDIQVESRLGKGS 690 Query: 467 EVIAILPN 474 LP Sbjct: 691 IFTIKLPA 698 >gi|223983989|ref|ZP_03634147.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM 12042] gi|223964065|gb|EEF68419.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM 12042] Length = 853 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 9/266 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + D+ + E + + + A + AKS+FL++MSH++RTP+NAI+G + + Sbjct: 566 AILISRRTDEQRLKAERQQEILKTALENATAASAAKSQFLSNMSHDIRTPMNAIVGMTAI 625 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 P E + + I S +HLL+LIN+ILD+S+IE+G+ +++ + +++ Sbjct: 626 AGAHLNDP---ERVQACLRKISLSSKHLLSLINDILDMSKIESGKLTIAQEPFNFAELIT 682 Query: 334 ECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 E + +++ +A+EKN + + V D +RQV +N+LSNAVK+T GG + + Sbjct: 683 EVVELVRPQAEEKNQIFEFQPERLEKEGVVGDPLRIRQVCINILSNAVKYTPEGGTITLE 742 Query: 393 VGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + S + D G G+ + + F + E G GLG+ I ++ Sbjct: 743 ISQRSSLYKGCQNFVFRCADTGIGMEPEFMTRLFQPFERSDHPQARNENGTGLGMAITKN 802 Query: 448 IMANHGGQFLIRSKLREGVEVIAILP 473 ++ G+ + S +G ILP Sbjct: 803 LVDLMNGEIQVTSTAGQGSVFTVILP 828 >gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 2010 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 23/293 (7%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256 L +N ++ E+E + ++ R+ EE + KS FLA+M Sbjct: 1270 QEELQTTNEELQEKARLLAHQNQEVERKNTEVEQARQALEEKAKQLALTSKYKSEFLANM 1329 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L S+ + + G L+ E+ IH SG LL LIN+ILDLS+IE+ Sbjct: 1330 SHELRTPLNSLLILSDQLCKNSEGNLST-RQIEFSRTIHSSGNELLMLINDILDLSKIES 1388 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G + + L D+ + A+ +N++ ++ L + + D K ++Q++ NL Sbjct: 1389 GTVAMDFAEHRLADLTSYVERTFRHVAEARNVDFVIELGTHLPASIRTDIKRLQQILKNL 1448 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDNGPGIAEGEIPTVLT 422 LSNA KFT G V ++V SG S+ D G GI+ + + Sbjct: 1449 LSNAFKFTHR-GHVTLSVEEVSGGWSADNERLHSAPACIAFSVSDTGIGISADKQQIIFE 1507 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 +F Q + G GLGL I++ + GG+ + S +G LP + Sbjct: 1508 AFQQADGSTSRKYGGTGLGLAISRELSKLLGGEIRLISSPNKGSTFTLYLPLS 1560 >gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 391 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + A++ +++AE+ +++KS FLA+MSHE+RTPLNAI GF+ Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ E +Y I + L+ L+N+ILD+S+IEAG E ++ + + + Sbjct: 190 EVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLL 245 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + Q+R E I +P S + D + QV+ N NA+KFT G Sbjct: 246 LSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303 Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G+ + Y +KD G GI ++P V F + ++G GLGL I+Q+I Sbjct: 304 -IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 +A GGQ S EG +P Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383 >gi|270293993|ref|ZP_06200195.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275460|gb|EFA21320.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 615 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L ELEV++ E + RAEE + KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 370 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 426 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILD+SR+EA R LS + +++ I ++ + + + Sbjct: 427 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 485 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401 A+ + + + + + D + ++QV++NLLSNA KFT G + + + T+ Sbjct: 486 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 544 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+ D G GI + V F + QG GLGL I + + GG+ I Sbjct: 545 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 600 Query: 462 LREGVEVIAILP 473 +G + P Sbjct: 601 YTDGARFMFTHP 612 >gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29] gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3] gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3] gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29] Length = 613 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 10/245 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 377 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 434 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 435 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 493 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 494 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFE 552 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F + A G GLGL IA+ ++ HGG +S+ +G + LP P Sbjct: 553 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPLA------P 606 Query: 483 EDNHE 487 ++ + Sbjct: 607 DEEDD 611 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 8/358 (2%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G +T + G + S T+ + + + ++P + + Sbjct: 213 GAALATVTGIHHGHPAAVEVIPPGSETVWPTAAAARGESELVPLEGAVFADLPTGNWAEA 272 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + ++ V G + L + A + + A+S + Sbjct: 273 PLQALVVPLRQQGGAPYGFMVVGLNRYRPLDDGYRGFVELVA--GHVATGVASARSYQAQ 330 Query: 238 TRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 R+ E E + AK+ F +++SHE RTPL I+G E + + +E + +H Sbjct: 331 QRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRDRLTDA--DPGLREELEVVH 388 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 R+G L L+N +LD SRIEAGR + + L + E + + + ++ Sbjct: 389 RNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGLDFRVHCS 448 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 P V+ D +V+LNLLSNA+KFT G + V VG +++ D G G+A Sbjct: 449 PLPEPVFVDRSMWEKVVLNLLSNALKFTFD-GSIRVAVG-VEEGAAVVTVDDTGIGVAAK 506 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E+P + F + A + +G G+GL + + ++ HGG+ S EG LP Sbjct: 507 EMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFTIRLP 564 >gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] Length = 933 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RVEGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] Length = 873 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VAL +Q++ S + + + + ++ + L + I + Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++++ AKS FLA+MSHE+RTP+NAI+G SE++ N +E Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H+S +L+ +IN+ILD S++EAG+ L E L +V C + +A +KN+++ Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + ++ + V D+ + Q++LNL+ NAVKFT G V + V + S+ D G Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E + ++ F Q + +G GLGL I++ +++ + G+ +RS G Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNGSCFS 590 Query: 470 AI--LPNTRVLNFIPED 484 LP + P + Sbjct: 591 FSLQLPKRSQPHSEPVE 607 >gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] Length = 981 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 132/276 (47%), Gaps = 9/276 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 N+ L + +L + + + + A + N +KS FL+SMSH++RTP+N I Sbjct: 430 RSGNIAGLLIAKDVTELRLKESLYIQALKDASESANQANKSKSEFLSSMSHDIRTPMNGI 489 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E+ + + ++ + I S LL+LINE+LD+S+IE+GR L+E + Sbjct: 490 IGMTEIAR---VNIQDTAKVQDCLHKITMSSNLLLDLINEVLDMSKIESGRLALNEREFN 546 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 + ++V +Q +EKN + I+ + D ++Q+ +NL+SNA+K+T G Sbjct: 547 IAELVETLFTAVQPLLKEKNHTLNVHINDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEG 606 Query: 387 GRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 G + ++ ++DNG G+ + + F + A + G GLG Sbjct: 607 GNIDFSISEFHDNSPAYSKFQFILRDNGMGMTPEFLERLFLPFERADEARQKNIAGTGLG 666 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + I ++I+ GG + S+ +G RV Sbjct: 667 MAITRNIVHMLGGDITVASEPGKGTTFTVGFSLKRV 702 >gi|240145146|ref|ZP_04743747.1| putative sensor histidine kinase [Roseburia intestinalis L1-82] gi|257202824|gb|EEV01109.1| putative sensor histidine kinase [Roseburia intestinalis L1-82] Length = 437 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL----SDETRKRAE 243 + + + +Y L + + + A+ L+ E EV + + S ++ + Sbjct: 153 LILAVGLMVFLMCVFYSYRLTRRLMAPIGKMADNIILVDETEVYEEMRPFISMIKKQHMD 212 Query: 244 EEN--LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 N + F A++SHEL+TPL AI G++E+I G + + +IH+S + L Sbjct: 213 ILNHAQMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDTA---HFANEIHKSAERL 269 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 LIN+I+ LS ++ +L + L D+ +CI +Q++A + + + + + + Sbjct: 270 QALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPM 327 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ++ + +++ NL SNAV++ GG V + + R I +KD G GI + + V Sbjct: 328 SGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLI-VKDTGIGIPKEQQERVF 386 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + + + G GLGL I + I+A H Q + S++ G E+ + Sbjct: 387 ERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEIKIVF 437 >gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1490 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R + E K+ F++ +SHELRTPL ++ ++ + + P + E I Sbjct: 1252 ERDKVE---RMKAEFISVVSHELRTPLTSMQAALSLLSEKIIDPNSPEGEAT-IQIATEG 1307 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 L+ L+N+ILDL R+E+G+ L +S ++ID++ I +Q A + NI + + Sbjct: 1308 TDRLVRLVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCS- 1366 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIA 413 + AD + QV+ NLLSNA+KF+ + ++V G ++D G GI Sbjct: 1367 -FQIEADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIP 1425 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + ++ FGQ + + G GLGL I +SI+ HGG+ S +G LP Sbjct: 1426 SAHLDSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLP 1485 Query: 474 NT 475 Sbjct: 1486 KK 1487 >gi|295699600|ref|YP_003607493.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295438813|gb|ADG17982.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 1193 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 10/279 (3%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASM 256 L ++ + ++ LE KS + +R E+ + KS FLA+M Sbjct: 443 QRRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQNDLAANAERLEQSSRYKSEFLANM 502 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN+ L +++++ G L +E + Y IH S LL LIN+ILDLS++EA Sbjct: 503 SHELRTPLNSSLILAKLLQQNRSGNLTDEQVR-YAETIHASNSDLLVLINDILDLSKVEA 561 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ + +S+ ++ M + A K++ + P + D + + Q++ NL Sbjct: 562 GQLTVEPETVSIEATLQSLDEMFRPIAATKHLRVAFDKLPGTPDTFVTDGQRLTQILRNL 621 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 LSNAVKFT G V + V ++D+G GI ++ + +F Q + Sbjct: 622 LSNAVKFT-EHGEVTLEVAKVEDNVLRFDVRDSGIGIPADKLDMIFDAFQQADGSTSRQY 680 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S++ +G LP Sbjct: 681 GGSGLGLSISREFSRLLGGRITVASEVGKGSVFSLWLPL 719 >gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1] gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1] Length = 338 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK F++++SHEL+TP+ + G E +E E N++ K++I + + LIN Sbjct: 116 QAKKDFVSNVSHELKTPIAVLKGVIETLEAE----ENDKGKKKFISMAQKRINQMNTLIN 171 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++L ++R+E+ ++ ++ I+L + + L QEKN++ + K++ + ++ DEK Sbjct: 172 DLLIIARLESKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNKVNENF-KIYGDEK 230 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + ++ NL+ NA+K+ G+V V G+ I +KD G GI + +P + F + Sbjct: 231 KLSILLKNLIENAIKYNKENGKVEVK-GFLDKDYTVIEVKDTGIGIPKEALPLIFERFYR 289 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + G GLGL I + I H G+ + S L +G LP Sbjct: 290 VDKSRSRNVGGTGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLPK 337 >gi|59711315|ref|YP_204091.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114] gi|59479416|gb|AAW85203.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114] Length = 744 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 17/327 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L S L A++ + + + L + L + ++ + +S + Sbjct: 273 LEQRFIYSVVLSFFVLIAIAVLIRGLFEHKILLSLNSLLKYTNTVSKNETRSEYQGCGIL 332 Query: 219 AEKDDLIAELEVAKSLSDETR-------KRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 E D + +LE S E + + AE+ KS FLA MSHE+RTPLN ILG S Sbjct: 333 -EFDQIGEKLEQTFSELIEAKEDSYKAQRAAEKLAQVKSDFLARMSHEIRTPLNGILGIS 391 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ + ++ + +H+ G+HLL ++N+ILD S+IE + +++ + L D+ Sbjct: 392 SLLKSSNLTR----EQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDV 447 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + + + KN+ + + + +D+ + Q++ NLLSNA KFT G+V Sbjct: 448 LENINAIYFPLCKNKNVLFSIENHVNPDVFINSDQVRLTQILFNLLSNAAKFTEK-GKVK 506 Query: 391 VTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 +T+ Y S+ D G GI E + F Q + G GLGL I + Sbjct: 507 LTLSLNKHNSDYYLQFSVDDTGVGICAEEQTRMFEPFEQSGFSESRKFGGSGLGLAIVKQ 566 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 ++ G+ I S L G ++P Sbjct: 567 LLDLLKGKITINSTLGVGSTFSVLIPV 593 >gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573] gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573] Length = 857 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + + +E++ + SG+HLL ++N+ILD SR+E Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G++ + +S L ++V + + +K IE+ + + + ++ V +D+ + Q++ NL Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSATLVRSDQIRINQILFNL 603 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 G GLGL I S++ GQ + S+ G LP V + P+ Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715 >gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 785 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 402 ITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL----PSAETL 457 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDLS+IEAG E ++L +I R + + R Q Sbjct: 458 EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEICRNIYQIHKDRVQ 517 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E + + + D + QVI N L+NA KFT G + + + Sbjct: 518 E-GVTLILDNQDEDLIIEEDRNRIAQVITNFLTNAGKFTLS-GEIRFGFK-VNNQCIRFY 574 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA ++ + F + S QG GLGL I + I+ GG+ + S++ + Sbjct: 575 VKDTGIGIAPDKVGHIFDRFVKL----NSFAQGTGLGLAICRMIIEKIGGEIGVTSEIGK 630 Query: 465 GVEVIAILP 473 G +P Sbjct: 631 GSTFYFTIP 639 >gi|153832905|ref|ZP_01985572.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01] gi|148870828|gb|EDL69727.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01] Length = 859 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ A++ FLA MSHE+RTP+N ILG +++++ + + K I + SG Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----DTQEQKNQIDVLCHSG 528 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + K +E+ + + Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDP 588 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SNAVKFT G + + + + D G GI Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPT-GSIRLHAELEQFYGAENSVLVVELTDTGIGI 647 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I ++++ G +RS G + L Sbjct: 648 ESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGVGTTFVITL 707 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 708 PVKDRERVLRPL 719 >gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002] gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002] Length = 1430 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 147/281 (52%), Gaps = 22/281 (7%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + A + ++ AE N AK++FL SMSHELRTPLNA+LGF++++E P + Sbjct: 1082 QRQQANKQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMER---SPDLSTD 1138 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++EY+ IHRSG+HLL L+N+IL+L++ E G +L+ + +L D++ + M L Q K Sbjct: 1139 HQEYLSIIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQHK 1198 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYI 403 NI++ D + + AD+ + V+L+LL+NA+KFT G V +TV + Sbjct: 1199 NIQLDIHWDEQVPRYINADQAKLHSVLLHLLNNALKFTDS-GCVQLTVKTLAQNPLRLRF 1257 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIAE + + +F + A QG GLGL ++Q + GG+ ++ S+ Sbjct: 1258 SVTDTGIGIAETDFTRLFDNFVKLE-AGDRMGQGSGLGLALSQKFVNLMGGEIVVSSQPG 1316 Query: 464 EGVEVIAIL--------------PNTRVLNFIPEDNHESTQ 490 G L P +P E+ Q Sbjct: 1317 VGSCFSFELTGATPANPMHLALYPPQARDEQLPALTPEALQ 1357 >gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 657 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 9/322 (2%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V P VV ++ Q I + +F + + + L D Sbjct: 194 VLDYTSPRVVPMARQLIEERWAETYESEMLRRDGTTFPAIVRGRDQRFGGRELRLTTILD 253 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + ++ + AE AKS FL+SMSHELRTPLNAILGF++++E++ Sbjct: 254 --ITRQKESEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMDDGLST 311 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I +I ++G HLL LINE+LDL+ IE+G+ LS + + ++R+C ++Q Sbjct: 312 D---QLDSIAEILKAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQPL 368 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + I++ +I P ++ AD + ++Q++LNLLSN +K+ G V V V G Sbjct: 369 ATSREIDLHLEI-PERAAACADNQRLKQIVLNLLSNGIKYNHPSGEVRVIVEP-DGSRLR 426 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I++ D G GI + + F + A ++ +G G+GL I + + GG+ + S+ Sbjct: 427 IAVADTGAGICAERLGELFQPFSRL-GADHASVEGTGIGLVITRKLTEAMGGRIGVESEP 485 Query: 463 REGVEVIAILPNTRVLNFIPED 484 +G LP + L+ P Sbjct: 486 GKGSRFWVELPLAQ-LSSQPAP 506 >gi|71909432|ref|YP_287019.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849053|gb|AAZ48549.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 759 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 18/333 (5%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH--LFK 209 +A+ ++ + + I ++ LA A + L + Sbjct: 279 AAIDRQLVRTIAVSAALMLGFLCLAWFIADRWLVKPILAVATAARRLRSGDLDARTGLRR 338 Query: 210 SNVKILSCQAEKDDLIAEL-------EVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 SN ++ D + +L + + AE + AKS FLA+MSHE+RT Sbjct: 339 SNDELGELLEAFDHMAEDLAESDRNLRRQAVALERAKGDAEAASAAKSTFLANMSHEIRT 398 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN ILG + +I + + + + + S +HLLN+IN IL+LS+IEAG++ L Sbjct: 399 PLNGILGMAHLIRRGGL----TDEQAKRMDTLQVSSEHLLNIINTILELSKIEAGKFVLE 454 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 E+++ + ++ +LQ R Q K++ + ++ +++ D ++Q +LN NAVKF Sbjct: 455 ETSVRIETLIANIASILQDRIQAKHLVLRTEVGALPANLLGDATRIQQALLNYAGNAVKF 514 Query: 383 TAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G + + V ++D G GIA +P + T+F Q G Sbjct: 515 TET-GSIALRVLPLEEDADSVLIRFEVQDTGIGIAPEVMPKLFTAFEQADATSTRKYGGT 573 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I Q I GG + S L G Sbjct: 574 GLGLAITQKIAKLMGGDAGVESTLGVGSTFWFS 606 >gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030] gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 873 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VAL +Q++ S + + + + ++ + L + I + Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++++ AKS FLA+MSHE+RTP+NAI+G SE++ N +E Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H+S +L+ +IN+ILD S++EAG+ L E L +V C + +A +KN+++ Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + ++ + V D+ + Q++LNL+ NAVKFT G V + V + S+ D G Sbjct: 473 LVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E + ++ F Q + +G GLGL I++ +++ + G+ +RS G Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNGSCFS 590 Query: 470 AI--LPNTRVLNFIPED 484 LP + P + Sbjct: 591 FSLQLPKRSQPHSEPVE 607 >gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A] gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112] gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A] gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112] Length = 598 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + E +++ + ++ Sbjct: 349 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPKFLKVVQDETDRMI 406 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356 +IN++L LSR++AG +L+ +++ ++ + + +++ I + Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NA+K++ GG + + T +SI D G GI + Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 525 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 526 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582 >gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E +S F+ ++SHEL+TPL +I GF E ++ + + + ++ I Sbjct: 356 RRLE---KMRSDFVTNVSHELKTPLTSINGFVETLKSGAV--EDRDVAMRFLDIIEIETD 410 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE+ + + I D + E + + A K IE+F ID +L Sbjct: 411 RLKRLINDILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADSKEIELFTDIDSALP 470 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 S++ + +Q+++NLL N++K+T IGG+V +T +T + +KD G GI + ++P Sbjct: 471 SIYGNRDWFKQIVINLLDNSIKYTPIGGKVELTA-YTKDNNIVLHVKDTGIGIPKKDLPR 529 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + A G GLGL I + I+ + G+ + S+ G E I +P Sbjct: 530 LFERFYRVDKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583 >gi|225027633|ref|ZP_03716825.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353] gi|224955042|gb|EEG36251.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353] Length = 606 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 139/303 (45%), Gaps = 18/303 (5%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 ++ V I + FF + + + IL + L + Sbjct: 164 VLWQPVFYIVPFFIGIFLQCFFNTMPWANTSLTITILLIFVNN---------QQRLLQKK 214 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + AE AKS FL+ MSH++RTP+N ++G ++ + P E + + + Sbjct: 215 TQDAEAAVRAKSEFLSHMSHDIRTPINGMMGMLDIAQAHLNNP---EKMDLCLSKMRGAA 271 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-- 356 LL+LIN++LD+S+IE G +L E +I ++ + + ++ A EK++ I Q I+ Sbjct: 272 DQLLSLINDVLDMSKIETGSIQLVEEPFDMIRLLNGTLAVQEIIASEKSLTIEQDIEGAI 331 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGI 412 V +R +++N++SNA+K+T GG + V+ S G+Y+ + D G G+ Sbjct: 332 EHPCVCGSPNYVRSILVNIISNAIKYTNPGGDIFVSARELSCDGEYVKFEFIVSDTGIGM 391 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +E + F Q +S+ QG GLG+ I ++++ G + +K EG L Sbjct: 392 SEEFAEHIFEPFTQEHAENRSSYQGTGLGMSIVKNLINKMKGTITLETKQGEGSTFTITL 451 Query: 473 PNT 475 P Sbjct: 452 PVK 454 >gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] Length = 391 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + A+ +++AE+ +++KS FLA+MSHE+RTPLNAI GF+ Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ E +Y I + L+ L+N+ILD+S+IEAG E ++ + + + Sbjct: 190 EVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQL 245 Query: 332 VRECIIMLQLRAQEKN--IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + Q+R + I+I + S + D + QV+ N NA+KFT G Sbjct: 246 LSDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHKGS-- 303 Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G+ + Y +KD G GI ++P V F + ++G GLGL I+Q+I Sbjct: 304 -IRLGYEARDTELYFYVKDTGTGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 +A GGQ S EG +P Sbjct: 359 VAKLGGQIGANSVEGEGSTFWFTIP 383 >gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 908 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 10/247 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E + +AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + + Sbjct: 530 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 585 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I + + LL LIN+ILDLS+IE+G E +L + E M+Q + ++ Sbjct: 586 EYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITNPDV 645 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E ++ D ++QV +N L+NAVK T G + + I ++D+ Sbjct: 646 EFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCT-KSGYIKMGYSIEREG-IRIYVEDS 703 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E V F + QG GLGL I+++I+ GG+ S G Sbjct: 704 GVGIPEELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTF 759 Query: 469 IAILPNT 475 A +P Sbjct: 760 WAWIPCE 766 >gi|332527416|ref|ZP_08403471.1| PAS protein [Rubrivivax benzoatilyticus JA2] gi|332111826|gb|EGJ11804.1| PAS protein [Rubrivivax benzoatilyticus JA2] Length = 674 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 14/294 (4%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK---SLSDETR-KRAEEENLAK 249 + + + +L E+ ++AELE + + E R ++AE N AK Sbjct: 235 VWMELRAARFEHRGRPAVLGLLRDMTERRRIVAELERHRHHLEVLVEERTRKAEAANRAK 294 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLNAI G +++ E + + + I R+ HLL+L+N++L Sbjct: 295 SAFLANMSHEIRTPLNAITGMVHLLQRE-----ASPQQQRSLSVIARAVDHLLSLVNDVL 349 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLS+IE+G+ L +L +++ ++ A EK++ + + + + D + Sbjct: 350 DLSKIESGKLTLETVDFALDEVLERARGLVADLAAEKHLTLSVDNRAAGARLRGDPTRLA 409 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFG 425 Q++LNLL NAVKFT G + +T + + + D G GI + + F Sbjct: 410 QLLLNLLGNAVKFTDR-GEIRLTCAVDASEAAAPRLLLEVSDTGIGIEAARLAQLFAPFQ 468 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 Q + G GLGL I + ++ G+ +RS +G + R + Sbjct: 469 QADSSTTRRFGGTGLGLAICRHLVELMHGRIDVRSVPGQGSTFCIEVRLQRAQD 522 >gi|329926653|ref|ZP_08281064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328939062|gb|EGG35427.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 1017 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 204/484 (42%), Gaps = 28/484 (5%) Query: 34 DREIITLHVESLFRVSPILPLFVLL-VANIGTWFTQ--NPIFPMWSLITLAVYAANLSLG 90 +++ L R S ++ +++ V +I + + + + L + + + +G Sbjct: 167 AKQLQQEKSVELVRDSLVIGSLLVIGVYHIILYVLRRNDVTPLYFGLFCMCIAVRTMLVG 226 Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY------LTIYKSAT 144 + + I +VW + I +G + + + S T Sbjct: 227 SRFILE-IFPAFSWVWFAKVSYLTIYVGELFLISYIYHLFPQFLSRKVWRLTQFFTISLT 285 Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 LL+ + + ++ L S V+ A+ ++ + ++ +L +L F T + Sbjct: 286 LLVLTTDIRVYDYSLIPFQIYSIGLVLYAVYASIRLARQRQEGAVLLILGFSLIFLTAVN 345 Query: 205 YHLFK----SNVKILSCQA------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L + + +L + L + A + +R + K FLA Sbjct: 346 DTLNRKGVFTTPALLQFGVLGFVFLQALLLSMKSSRAFFQVERLSERLLTLDKLKDEFLA 405 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SHELRTPL+ I+G ++ + + G L + + + + SGQ L +L+N+ILD S++ Sbjct: 406 KTSHELRTPLHGIIGLADALIDGSSGKLPSPVI-DLLRLMKVSGQRLAHLVNDILDFSKL 464 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 + L ++L V + +L A++K + + ++ + V ADE ++Q++ N Sbjct: 465 KHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDM-YVMADENRLQQILHN 523 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+ +T G V VT G+ I I D+G GIAE ++ + SF Q + +S Sbjct: 524 LIGNAIAYTET-GAVTVTAKRLQGQ-LSIQITDSGIGIAEADLDRIFESFEQINPLDRSQ 581 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----RVLNFIPEDNHESTQ 490 + G G+GL I + ++ H G+ + S L EG LP +P ++ T+ Sbjct: 582 QGGTGIGLSITKKLVELHDGRIGVTSGLGEGSTFSFTLPMAGEGKPKSPPLPVADYIPTE 641 Query: 491 YKCY 494 + Sbjct: 642 SFSH 645 >gi|194291671|ref|YP_002007578.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193225575|emb|CAQ71521.1| putative sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 649 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 97/426 (22%), Positives = 167/426 (39%), Gaps = 14/426 (3%) Query: 58 LVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAI 117 A T + +++ AV L+ + + + Q Sbjct: 22 ASAQAPAPDTHAHLLGWCTVVLCAVTPCLLAWIIALYREVRRRRAAETALQDCVAIQ--T 79 Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALST- 176 L + V + +S L+ + +L L + +A Sbjct: 80 ALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAHPLATDMAELAR 139 Query: 177 ---QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 Q I L L L ++ + DL E+ + Sbjct: 140 DYRQVIADGAPLHADRCLRLGDRTLHVLNWLTPLRGADGTVKGLAGGCVDLTERHEML-A 198 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + AE N AKS FLAS+SHE+RTP+NAI G E+ +++ P + + + Sbjct: 199 ELAQAKTEAEAANRAKSAFLASVSHEIRTPMNAITGMLELTLAQSLLP---DEQRLQLLT 255 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 H+S LL LI++ILDLS++EAG++ + + SL +V + +++ A +K + + Sbjct: 256 AHKSAVGLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPGAAQKGLPLTSG 315 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR--GQYISIKDNG 409 + +L+ + D RQ++ NL+SNAV+FT G V + T +++ D G Sbjct: 316 VSAALAPLHQVDALRFRQILANLVSNAVRFTDSGTVHVRLDAQSTGDGIQDVILTVSDTG 375 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + F Q +S G GLGL I + + GG+ + S+ G V+ Sbjct: 376 IGIPFEAQARLFQPFEQVHGCARSHAGGTGLGLAICRRLAKAMGGRITLTSQPGRGTRVV 435 Query: 470 AILPNT 475 LP Sbjct: 436 VSLPLA 441 >gi|330830927|ref|YP_004393879.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565] gi|328806063|gb|AEB51262.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565] Length = 941 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 24/348 (6%) Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + +S + I S +++ G + Sbjct: 350 GRIVWPLQRAVAGMSRLARGDLAPLEPIASTGRDELAELGRALQVFRDNAVELGRYQREL 409 Query: 212 VKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + L E + + R AE+ N AKS FLA+MSHE+RTP+N IL Sbjct: 410 ESRVEERT--GQLSHANERLNEEVEKQRQARAEAEQANRAKSVFLATMSHEIRTPMNGIL 467 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++E + ++T + Y+ I SG+ LL ++N+ILD S+IEAG E L Sbjct: 468 GGLTLLEDTHL----SDTQQRYLAAIEHSGESLLEILNDILDYSKIEAGHVEARREPFPL 523 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG 387 +V E + + +A+ K + + + P L V D +RQV+ NLL NAVKFTA G Sbjct: 524 FQLVDELGALFRPKAEAKGVTLALEYAPWLAPVVEGDLGKLRQVLGNLLGNAVKFTAR-G 582 Query: 388 RVHVTV------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS---AEQGV 438 ++ +TV G + ++D GPGI E V +F Q K + G Sbjct: 583 QITLTVAPLVCHGPCAEPCIRFVVRDTGPGIPADEQEAVFEAFRQ----RKRDIGHQGGT 638 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 GLGL I++ ++ GG+ ++ S+ +G E LP R +P + Sbjct: 639 GLGLAISRKLVTAMGGELILASEPGKGCEFSFSLPLQRSSAQLPAEAQ 686 >gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603] gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603] Length = 857 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 16/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + + +E++ + SG+HLL ++N+ILD SR+E Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G++ + +S L ++V + + +K IE+ + + + ++ V +D+ + Q++ NL Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNITSATLVRSDQIRINQILFNL 603 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 G GLGL I S++ GQ + S+ G LP V + P+ Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715 >gi|170692375|ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170142805|gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 657 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 11/279 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +E++ + E E + R+ AEE N AK RFLA +SHELRTPL +L + V+E Sbjct: 259 DIHSEREAM-QERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE 317 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 M P + + + I R+ + LI+++LDL+R+ G+ LS + + +++ Sbjct: 318 ---MIPDLPDQARSSVRMIRRNIELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + + Q K ++ D + V AD ++Q++ NL+ NA KFT GG ++V Sbjct: 375 LELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 IS++D G GI +I + +F QG + G+GLGL I +++ HGG Sbjct: 434 DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493 Query: 456 FLIRSK-LREGVEVIAIL-----PNTRVLNFIPEDNHES 488 +S G L P +P+ H + Sbjct: 494 VTAQSPGPHCGATFTITLPTAAAPARTSQPVLPDPVHPA 532 >gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1814 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 29/299 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASM 256 L SN ++ A ++EV + +E R+ EE KS FLA+M Sbjct: 1275 QKALQASNAELEEKAALLARQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANM 1334 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L ++++ G L+ E+ IH +G LL LIN+ILDLS++EA Sbjct: 1335 SHELRTPLNSLLILAKLLADNADGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEA 1393 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ ++S + I+LI +V + EK ++ ++ P L ++ DE+ + QV+ NL Sbjct: 1394 GKMDVSPTRIALIQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNL 1453 Query: 376 LSNAVKFTAIGG-RVHVT-------------------VGWTSGRGQYISIKDNGPGIAEG 415 LSNAVKFT G + + + S+ D G GIA Sbjct: 1454 LSNAVKFTDTGAVELVIRPAGADVPDGIREQLLEHGALRDPDAEMIAFSVTDTGIGIASS 1513 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++ + +F Q G GLGL I++ I GG+ S+ G LP Sbjct: 1514 KMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1572 >gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] Length = 942 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 11/272 (4%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 I+ A K A + A+ +++ + A+ N AK+ FL+ MSH++RTP+NAI+G Sbjct: 529 MAATIVRLSARKKAQKAAQKKAEEMAELA-EHAQAANKAKTAFLSHMSHDMRTPMNAIIG 587 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 F+ + M ++ K + I S +HLL+LIN++LDL+RIE+G+ + + Sbjct: 588 FTGI----AMKNNPSDEVKNCLEKIDESSEHLLSLINDVLDLTRIESGKVNYNPVPADVK 643 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +I + + + ++I + + + + +V AD +R V++N+LSNAVKFT GG Sbjct: 644 NITDSALDITKGFLMNRDINFKIQREEAKIPNVLADPARLRDVLVNILSNAVKFTPDGGT 703 Query: 389 VHVTVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 + G I D G G++E V F Q +++ GVGLG+ Sbjct: 704 ITFEARCQEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQEDSGVRTQYHGVGLGMA 763 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 I + + GG + SK EG +P Sbjct: 764 IVKKYVDMMGGTISVHSKKHEGTTFTVDIPLE 795 >gi|163939207|ref|YP_001644091.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861404|gb|ABY42463.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 466 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIFDMGLILAPLALAMILITIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +L+ EKN+ I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YELQFVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 444 ESEKGKGTTVSIKL 457 >gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] Length = 1128 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 10/378 (2%) Query: 118 GLCWTLLTLVEPGTWTP--EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G+ W L+ V L +L A+ + +++ L + + + + Sbjct: 332 GIDWALVVEVPESVAFARVHQLETVFIFAMLTAILLVVMASHYLSNFITAPL--LKLTWA 389 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + + + + +S + + +++ ELE L Sbjct: 390 AEKVSAGDLDADMINTQRKDEIGRLAVSFERMQRSIREKILLIKDQN---EELESNLKLI 446 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + + N K FLA+ SHELRTPL+ ++G +E + GP+ E +K + I Sbjct: 447 QKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITAE-HKYQLDIII 505 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SGQ L L++++LD ++ G ++ SA+ L R + + K I I ++ Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLLGNKPIRIINQVP 565 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V AD + + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI Sbjct: 566 SEPVWVSADPQRLEQVLYNLVGNAIKYTSE-GKIVISANVVDDQ-IRVQVVDTGQGIPAD 623 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + Q QG GLGL I++ ++ G + S+ G LP Sbjct: 624 QLEHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPVA 683 Query: 476 RVLNFIPEDNHESTQYKC 493 +++E+ +K Sbjct: 684 SEQQIQDANHYEAPHFKA 701 >gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1] gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1] Length = 591 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 4/231 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 +S F+A++SHELRTP+ + G+SE + + + E E I+ + + Sbjct: 362 RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDF-IQDQEERNEITKIIYDESKRMGR 420 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVW 362 L+ ++LDL+R+E+G L + + + A+EK++ + + + + + Sbjct: 421 LVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESEFNDEAMIN 480 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV+ NL+ NA++ T G V V V IS++D G GI + ++P V Sbjct: 481 IDEDRIEQVLTNLVDNALRHTDE-GSVSVKVEQEP-TFAKISVQDTGHGIPQEDLPYVFE 538 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A ++ G GLGL IA++I+ H G ++ S L+EG LP Sbjct: 539 RFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589 >gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 409 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 128/251 (50%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + L ++ A KS F+A+MSHE+RTPLNAI+GFS ++ ++ Sbjct: 166 ITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLAST----DDD 221 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ + + LL ++ ++LDLS+IE+G + S + D++ +L++R + Sbjct: 222 AEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHGILEIRLK 281 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + +I++ + ++++++ + Q++ NL+ NA+KFT G + Y Sbjct: 282 DKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFT-QNGEIRFGCRPHGETDVYF 340 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI GE + F + G GLGL ++Q+I+ + GG+ + S++ Sbjct: 341 YVSDTGIGIPVGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQSLGGEIGVESEVT 396 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 397 KGSTFWFTLPL 407 >gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 633 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 14/237 (5%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + FLASMSHELRTPLN ILG S+++ + + ++ + I++SG HLL LI +IL Sbjct: 390 TAFLASMSHELRTPLNGILGLSQLLLEDAQEAGYLDFIED-LQQINQSGLHLLGLIEDIL 448 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D+S+IEAG+ L + ++ E + +Q ++ + K L + AD K ++ Sbjct: 449 DISKIEAGKMILYPETFDVSLLITEVVNTIQPLIKKNGNSLQIKFSNPLGPMVADRKRVK 508 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGW------------TSGRGQYISIKDNGPGIAEGEI 417 Q+++NLLSNA KFT G++ +TV + S+ D G G+ + +I Sbjct: 509 QILINLLSNAAKFTEQ-GKILLTVNRQVFNETPQPSINSPSTWLVFSVIDTGIGMTQEQI 567 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F Q + G GLGL I Q GG + S++ G LP Sbjct: 568 SKIFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGGYITVESQVNVGSAFTVGLPA 624 >gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1061 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 23/317 (7%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + L Q + + L + A+ F + ++ + Q Sbjct: 722 GIWSASQTLRFQVLPPWWLSPWGLVALGLLAVCLFAAAVLLYRRRLRRLNALQLAVHK-- 779 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ Sbjct: 780 -------------QEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDN---- 822 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 + Y I R+G HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE Sbjct: 823 KQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQE 882 Query: 346 KNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + ++ + D +RQ++LNLLSNA+KFT G V + + +G Sbjct: 883 RGLRFSLEVGLLGDITASGDVTRIRQILLNLLSNAIKFTER-GVVGLKLTTLGSYQGLRF 941 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + D GPGI + + F QG A S G GLGL I Q + GG + S+L Sbjct: 942 EVADTGPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRL 1001 Query: 463 REGVEVIAILPNTRVLN 479 G + LP V + Sbjct: 1002 GAGTRFVVDLPLRWVAS 1018 >gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 6/239 (2%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + + A + AK FL++MSHE+RTPLNAILGF ++ ET N Y++Y+ I Sbjct: 142 QKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDET----TNPRYQQYLDIISN 197 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG++LL++IN+ILD S++ +G + + ++ D + + + A KNI + IDP Sbjct: 198 SGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFIDP 257 Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 +++ + AD ++Q++ N LSNA+KF+ G +HV +S++D G GI Sbjct: 258 TIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEA-RCDEGILSLSVRDQGIGIVLA 316 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + +F Q G GLGL I + + + GG + S + +G +P Sbjct: 317 DQERIFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIPV 375 >gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115] gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115] Length = 1644 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 148/369 (40%), Gaps = 27/369 (7%) Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF---PVVVALSTQAIMSMHVL 185 G TP + + ++ L++F A LSF V + I + Sbjct: 818 LGAATPNSIVVLPVVFEGQTKAVIELASFEPFSATHLSFLEQFTESVGIVLNTIQATMRT 877 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE- 244 + L + A L ++N ++ D E+E + R EE Sbjct: 878 ETLLRQSQSMAQ-ELQSQQEELRQTNEELEQKARLLADQNREVEDKNREVESARHALEEK 936 Query: 245 -ENLA-----KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 LA KS FLA+MSHELRTPLN++L + + G L + + Y I+ +G Sbjct: 937 AAQLALTSKYKSEFLANMSHELRTPLNSLLLLAHQLRDNPDGNLTD-QQQAYAKTIYAAG 995 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL+LIN+ILDLS+IE+G + + L + A +K + + L Sbjct: 996 NDLLSLINDILDLSKIESGTVSADLTEVPLRSVRDAVDTTFAHVASDKGVSLQLNFSADL 1055 Query: 359 S-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------------WTSGRGQYIS 404 ++ DEK + Q++ NLLSNA KFT G V + V + Sbjct: 1056 PPTLLTDEKRLLQILKNLLSNAFKFTEK-GSVTLQVEPALSGWSTEHSTLRRAPSVVAFR 1114 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIA + + +F Q G GLGL I++ + GG+ ++S Sbjct: 1115 VSDTGIGIAADKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGV 1174 Query: 465 GVEVIAILP 473 G LP Sbjct: 1175 GSVFTLYLP 1183 >gi|84387569|ref|ZP_00990587.1| Signal transduction histidine kinase [Vibrio splendidus 12B01] gi|84377617|gb|EAP94482.1| Signal transduction histidine kinase [Vibrio splendidus 12B01] Length = 856 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ------AEKDDLIAEL 228 Q + +I + + I +F+ N+ + + + I +L Sbjct: 399 VAQEFEHRMLPNIHMVVQGSKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDITKL 458 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ +D R+ AE ++ FLA MSHE+RTPLN ILG S++++ +E + Sbjct: 459 IEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKRSIH----SEDNR 514 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E + + S +HLL ++N+ILD S+IE G++ + + L ++V + + +K+I Sbjct: 515 EQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELVNTLDSIYRPLCGDKSI 574 Query: 349 EI-FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQY 402 + D+ + Q++ NL+SNA+KFT GG + V+ Sbjct: 575 AFTIVNHLADDIEINTDQVRLNQIMFNLVSNALKFTHQGG-ISVSFELESIFNSDHASLI 633 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + +KD+G GI E +I V F Q G GLGL I ++++ G +RS++ Sbjct: 634 VRVKDSGIGIDESKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVRSEI 693 Query: 463 REGVEVIAILPNT 475 +G E I +P Sbjct: 694 NQGSEFIIEIPVE 706 >gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1332 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 152/387 (39%), Gaps = 35/387 (9%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L + + L I + L L + + + Sbjct: 623 LPPDYVTISSGLGRVVPTALVLLPIVVEGQVLGVIELASVTPFTQIHQDFLAQLMETVGV 682 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------- 235 +V I L +T L + + ++ + Q E AELE +L Sbjct: 683 NVSTIVANARTDELLVESQRLTAELQQRSAELQTQQEELQHSNAELEEKAALLATQNRDI 742 Query: 236 -------DETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ R+ E + KS FLA+MSHELRTPLN+ L + + Sbjct: 743 EAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNS-LLILAQLLAQNPSR 801 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + EY IH +G LL LIN+ILDLS++EAG+ ++S ++L ++ + Sbjct: 802 NLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRP 861 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +KN++ P + + D+ +RQV+ NLLSNAVKFT GG V + + + Sbjct: 862 MTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELRIEPATDDE 920 Query: 401 Q-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +KD G GI E + ++ +F Q G GLGL I + I Sbjct: 921 VPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIA 980 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476 GG + S +G LP TR Sbjct: 981 HLLGGAVTVDSVAGQGSTFTLFLPVTR 1007 >gi|116694038|ref|YP_728249.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113528537|emb|CAJ94884.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a purine-cytosine permease domain [Ralstonia eutropha H16] Length = 1111 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 13/335 (3%) Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 + + + L + + A + + + A + ++ Sbjct: 575 FGLMLAGMVFAFGTLLWLLYTQEQLSGPVVLAAAPRASLFLKIGAGLMLFAAVA----AW 630 Query: 200 FTYITYHLFKSNVKILSCQAEKDD-LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + + + Q + I +L ++ AE+ NLAKSRF+ MSH Sbjct: 631 WLVLANESRAVAQEESERQNQLLQKEIDAHRRTDALLQSAKEVAEQANLAKSRFITGMSH 690 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+R LN+ILG+S+++ P +E + I R+G+HL +L++ +L+LSRIEAG+ Sbjct: 691 EMRAGLNSILGYSQLLLRT---PALPAACREDVRTIGRAGEHLSSLVDGLLELSRIEAGK 747 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLS 377 L + A++L D++ E + M + A + + ++ L V D K +RQ+I+NL++ Sbjct: 748 LRLEQDAVALEDLLDELVRMFRPLAAVRGLAFHYRVTGKLPAHVHGDAKRLRQIIINLVT 807 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT G V +TV I++ D GPGIA + + F + + +G Sbjct: 808 NAIKFT-EHGDVSLTVRHQRE-LAMITVSDTGPGIAAEDQARIFDPFERATPHDDR--EG 863 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +GLGL I + + GG +RS +G E L Sbjct: 864 IGLGLAIVRLLADLMGGDIRVRSAPGQGSEFSVRL 898 >gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus CGS00] Length = 554 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + E+ ++ I + + +L+ ++ Sbjct: 331 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDAESLDMFLNIILKESNRIESLVTDL 388 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE EL ++L D+ R I + +A +KNI I +I+ + V A E + Sbjct: 389 LDLSHIEQ-HTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKI 446 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI NLL+NA+ ++ G ++V V ++D G GI + + F + Sbjct: 447 AQVITNLLTNAINYSYEDGDINVRVYR-DDFRVIFEVQDFGIGIKLEDQQRIFERFYRVD 505 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ H G + S++ +G IL Sbjct: 506 KARSRDSGGTGLGLSITKHIVKAHQGNIEVNSQVGKGSTFKVIL 549 >gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 701 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 29/285 (10%) Query: 215 LSCQAEKDDLIAELEVAKSLSDET--RKRAEEE------------NLAKSRFLASMSHEL 260 L ++ I E + A+ ++ R++A N +K FLA +SHEL Sbjct: 244 LRGFSKIMQDITERKQAEEEKEQLLLREQAARAVSEAAQSAAEAANRSKDEFLAIVSHEL 303 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTP+ AI+G++ +++ + + + I R+ + LI ++LD+SRI G Sbjct: 304 RTPMTAIIGWAGMLQTGVL---DEAKATLALEIIERNANLQMQLIEDLLDISRIVRGELS 360 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 LS + L++++ I ++Q A K+I++ +D S+ +W D ++QV+LNLL+NA+ Sbjct: 361 LSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKIWGDSDRLQQVVLNLLTNAI 420 Query: 381 KFTAIGGRVHVTVGWTSG-----------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 KFT GGRV V + G I + D G GI+ +P V F Q Sbjct: 421 KFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGKGISPDFLPHVFERFWQADS 480 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 + +G+GLGL IA ++ HGG +S+ + +G LP Sbjct: 481 THTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFTVKLP 525 >gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 761 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 12/298 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 337 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 396 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 397 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 451 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 L +SL ++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 452 VSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 511 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + + T+ + +S+ D G GIA I + F + + +G Sbjct: 512 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 568 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF---IPEDNHESTQYK 492 GLGL +++S++ G +++ EG I LP RV +P S + K Sbjct: 569 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPFVRVQPPAAKLPRQAETSLEIK 626 >gi|302381238|ref|YP_003817061.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302191866|gb|ADK99437.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 585 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/435 (20%), Positives = 165/435 (37%), Gaps = 26/435 (5%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 S R + +++ + + +W I +G K + E Sbjct: 15 SRSRQWTVRIGMAVVIGAVFCNVSSVTFSLVWLAIYALTQVVESQMGPKGTLAAWLGAET 74 Query: 104 YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAV 163 Y L + + L + + T L L A + + + Sbjct: 75 YP--PVCLALVFINNVIFGLGGAMPMLSGTTMGLICGPLL-LGGAFLNAVMVSPGSRQMT 131 Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 F + P V+ L+ + ++ +L T + + Sbjct: 132 FSAALPPVLYLTLVPVGAIAHGFGALEAFQITLGALLLPAAGLATWMKLSSTVL------ 185 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + + AE+ N AKS FLA+MSHE+RTPLN +LG ++ + + + Sbjct: 186 ----------ALERAQTDAEDANRAKSDFLATMSHEIRTPLNGVLGMAQAMTADRLSV-- 233 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ + + +SG LL +++++LDL++IEA + EL + L +V + + A Sbjct: 234 --RQRQRLDIVTQSGHALLTILSDVLDLAKIEARKVELETADFDLETLVEQSRETFRAVA 291 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 K + +++P+ + + D +RQ++ NL+SNA+KFT G + V Sbjct: 292 DAKGLSFDARVEPAAAGTWRGDTTRLRQILSNLISNAIKFTDA-GTISVVADAV-DGRLR 349 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++++D G G+ ++P + F Q + G GLGL I + GG Sbjct: 350 VTVEDTGAGVTAEQLPLLFGKFVQADASTTRKHGGTGLGLSICMELAHLMGGSIEAERIE 409 Query: 463 REGVEVIAILPNTRV 477 G+ P RV Sbjct: 410 PHGLRFTFEAPLERV 424 >gi|257486369|ref|ZP_05640410.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987453|gb|EGH85556.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010647|gb|EGH90703.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 645 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] Length = 1383 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 6/284 (2%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSC-QAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 G A + L + L E LI+ ++ + AE N AK Sbjct: 289 GRPAGVIVLAAGAGRPLDEGYRTFLRLLGQETSALISRALTYRAQQRRAEELAE-LNRAK 347 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + F +SHE RTPL I+G E + ++ +E + I S + L++ +L Sbjct: 348 TVFFTDISHEFRTPLTLIVGPLEELRSRLGPA--DQWVRENLEIIRHSALRMTRLVDTLL 405 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 D +RIEAGR E L + + + + + + P V+ D Sbjct: 406 DFARIEAGRMEARYQPTDLAVFTADLAGVFRAAVDKAGLRLEVDCPPLPEPVYVDRGMWE 465 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 +++LNLLSNA+KFT G + V + + + D G G++E ++P V F + Sbjct: 466 KIVLNLLSNALKFTFE-GSITVRL-RAEDGQAVLRVSDTGVGMSEQDLPRVFERFQRVKA 523 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A + +G G+GL + + ++ HGG + S L +G LP Sbjct: 524 AQTRSIEGSGIGLALVRELVHLHGGTIGVDSTLGKGTTFTIRLP 567 >gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] Length = 998 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 16/296 (5%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + +S + L + E+ +A ++RA+ E+ KS FLA+MSH Sbjct: 285 LLIRAFNRMIRSFQRDLEKSERVKQALEEVSLANVE----KERAKNESRIKSSFLANMSH 340 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 E+RTP+NAILG + + + NE K+Y+ I SG +LL+L+N ILDLS+IE+ Sbjct: 341 EIRTPMNAILGMTALTLKTDL----NEKQKDYLTKIQLSGDNLLHLLNSILDLSKIESDM 396 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK-----IDPSLSSVWADEKGMRQVIL 373 ++L + L D++ E L A +KNI + + +L+ + D + Q++ Sbjct: 397 FKLEQRPFRLDDVLEEVFGTLGNSALDKNIRLLYTLQGKGLQSTLNRLVGDSLRVGQILK 456 Query: 374 NLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 NL+ NA+KFT+ G + V V S+ D G G+++ ++ V F Q + Sbjct: 457 NLIGNAIKFTSEGHINLTVKVLKQLDDQVTLQFSVSDTGIGMSKDQLQRVFDKFTQADSS 516 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 G GLGL IA+ ++ G S G L P N Sbjct: 517 TTRMFGGSGLGLSIAKELVHLMEGDIHAHSTPGRGSVFYFTLNLKTQEAEAPARNP 572 >gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 585 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 132/277 (47%), Gaps = 4/277 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + E+ + E R AE+ N K FL +SHELRTPL Sbjct: 172 QLIEVAQSLAGIAIERQLMDEERNQLLKNEHSARLEAEQLNQIKDEFLMMLSHELRTPLT 231 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILG+S++++ + N + + I R+ + L++++LD+SRI A + L + Sbjct: 232 AILGWSQLLKKGLITQKN--KVDKALETIERNAKLESKLVDDLLDVSRILANKLILKKEP 289 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 I L I++ + + L AQ K I I I VW D++ ++QV +LLSNA+KFT Sbjct: 290 IDLEFIIKLTLDSILLTAQAKEITIKTLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGE 349 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG + +T+ + R + I I D G GI +P V F Q + + G+G+GL IA Sbjct: 350 GGVITITLTQDNERAKII-IHDTGQGIKPELLPFVFKRFWQADSSSQRIAGGLGIGLSIA 408 Query: 446 QSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFI 481 ++ H GQ S +G ILP N Sbjct: 409 HRLVELHNGQIQAESLGEEKGATFTVILPLQHSENPA 445 >gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] Length = 630 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E + +AE + AKS F+A++SH+LRTP+N ILG +++ + Sbjct: 234 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 293 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I D+ S LL L+ +ILD +R+E G+ EL S +L +V + + Q Sbjct: 294 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K I+I D SL S+ ++ +R++ LNL+ NAVKFT G++ VTV + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 408 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI + ++ T+ F + + S +G+GLGL I + ++ N GG+ + S Sbjct: 409 KILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSI 468 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG +P P + E+ Sbjct: 469 ENEGSTFTLTIPCEIASLQSPREKEET 495 >gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 615 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 142/265 (53%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ N+E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ E + + A+ K I I + + D + ++ILNLLSN++KFT GG + Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V SG YI +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I+S+L +G E I LP Sbjct: 561 EMHKGTVTIKSELGKGTEFIIKLPA 585 >gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] Length = 618 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 10/240 (4%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + + E +++ + ++ +IN+ Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMIND 433 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-------QEKNIEIFQKIDPSLSS 360 +L LSR++ G ++ ++ D V + + +K I +++ Sbjct: 434 LLSLSRMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALW 493 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 494 VEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQ-GHVILSISDQGLGIPRKDLGKI 552 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 553 FDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLPYETMTEE 612 >gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM 1112] gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM 1112] gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] Length = 621 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + E +++ + ++ Sbjct: 372 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPQFLKVVQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356 +IN++L LSR++AG +L+ +++ ++ + + +++ I + Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NA+K++ GG + + T +SI D G GI + Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 548 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605 >gi|330888167|gb|EGH20828.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. mori str. 301020] Length = 645 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|160889665|ref|ZP_02070668.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492] gi|156860657|gb|EDO54088.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492] Length = 585 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L ELEV++ E + RAEE + KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 340 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 396 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILD+SR+EA R LS + +++ I ++ + + + Sbjct: 397 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 455 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401 A+ + + + + + D + ++QV++NLLSNA KFT G + + + T+ Sbjct: 456 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 514 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+ D G GI + V F + QG GLGL I + + GG+ I Sbjct: 515 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 570 Query: 462 LREGVEVIAILP 473 +G + P Sbjct: 571 YTDGARFMFTHP 582 >gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 655 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 11/303 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKI-LSCQAEKDDLIAELEVAKS 233 + + + + + + +++ ++ + K+ + + + +D L +E+ + Sbjct: 207 VASSRVGLGFTHLVIWLLGLAGIAWGNWLGANWAKARDQAQAALEQHRDQLESEIAERTA 266 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + AE N AKS FLA+MSHE+RTPLNAI G +I E + P E++ Sbjct: 267 ALSRSMHAAEAANHAKSSFLANMSHEIRTPLNAITGVLHLIRREGLLPG----QAEHLDK 322 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +G+HLL+LIN +LDLS+IEAG+ EL+ +S+ I+ + M RA K + + + Sbjct: 323 IDTAGRHLLDLINGVLDLSKIEAGKLELTSLPLSIPVIIGNLVSMQHERATAKQLRLETE 382 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDN 408 IDP++ + D ++Q +LN +SNA+KFT GRV + V ++D Sbjct: 383 IDPAIPEHLVGDGVRLQQALLNYVSNALKFTDS-GRVLLRVRLIEAGSDDVLLRFEVEDT 441 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++ T+ + F Q + G GLGL I + I GG S+ G Sbjct: 442 GIGITGADMATLFSEFEQVDNSSTRRHGGTGLGLAITRKIAQLMGGDAGASSEPGHGSCF 501 Query: 469 IAI 471 Sbjct: 502 WFT 504 >gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671] Length = 880 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 382 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 437 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 555 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 556 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 615 Query: 469 IAILPN 474 +P Sbjct: 616 TVRIPL 621 >gi|317478708|ref|ZP_07937862.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905138|gb|EFV26938.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 644 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L ELEV++ E + RAEE + KS FLA+MSHE+RTPLNAI+GFS+V+ G Sbjct: 399 KLKDELEVSEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLS---AGGA 455 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILD+SR+EA R LS + +++ I ++ + + + Sbjct: 456 SEEEQRGYFEIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVA-Q 514 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQ 401 A+ + + + + + D + ++QV++NLLSNA KFT G + + + T+ Sbjct: 515 ARRSTNQFLFECEREVVEMRTDVQRLQQVVINLLSNADKFTKE-GTITLKLEPDTARNVA 573 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 S+ D G GI + V F + QG GLGL I + + GG+ I Sbjct: 574 VFSVTDTGCGIPLDKQKRVFERFEKL----NEYVQGTGLGLSICKLTVEKWGGEIWIDPA 629 Query: 462 LREGVEVIAILP 473 +G + P Sbjct: 630 YTDGARFMFTHP 641 >gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM 17241] gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM 17241] Length = 566 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + F A++SHEL+TPL +I GF+E++E N++ + + G I+ Q L+ Sbjct: 335 QRAEQVRRDFAANVSHELKTPLTSISGFAEMMENGM--ADNSQDVRRFAGRIYTQAQRLI 392 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L ++I+ LSRIE + L + + L+ A++K +EI P+ V Sbjct: 393 ALTDDIIRLSRIERADLT-ENVPVELRALCDRAVETLRFTAEQKQVEIAVTGGPAP--VR 449 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + + ++I NL+ NAVK+ GGRV V++ + + D G GI + + Sbjct: 450 GDRQMLDELITNLMDNAVKYNRPGGRVDVSLS-VQDGLVCLRVADTGIGIPKEHQERIFE 508 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + + G GLGL I + ++ HGG + S EG V LP Sbjct: 509 RFYRVDQSRSKQTGGTGLGLSIVKHVVERHGGSITLESVPGEGTAVTVRLPA 560 >gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 668 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 5/252 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E++ A+ +++AE+ N AKS FL+SMSHELRTPLNAILG++++ E G L+ Sbjct: 273 ITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPLNAILGYTQLF--EYDGNLSR 330 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E I +I ++G+HLL LIN++LDL++IE+G+ +S + + +++EC +Q +A Sbjct: 331 EQVTN-IREIRKAGEHLLQLINDVLDLAKIESGKMMVSLEPVLVSRVIKECFTFVQPQAD 389 Query: 345 EKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 I ++ D + V AD +Q +LNLLSNA+K+ +GG V V + I Sbjct: 390 ALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYNIVGGEVEVRLDVQPMDQLRI 449 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +++D G GI V F + S A S +G G+GL I + ++ G S Sbjct: 450 TVRDTGRGIPADRQHEVFQPFNRLS-AENSNIEGSGVGLVITKQLVEMMHGNLDFSSAEA 508 Query: 464 EGVEVIAILPNT 475 G LP Sbjct: 509 IGTSFWIDLPTA 520 >gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia stuttgartiensis] Length = 595 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 6/242 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E N K F+A++SHELRTPL +I G+ E + + + I + Q Sbjct: 355 RKLE--NTRK-EFVANVSHELRTPLTSIRGYVETLLENYAAGGGHTY--NSLKVIMKHTQ 409 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L NLI +IL+LS++E ++ +++ + + + + + +EK I +L Sbjct: 410 RLDNLIKDILELSKLETNELKMELHELNIYECIEDILHTYKEHCEEKKQSFRLHISQNLP 469 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +V ++E +RQ++ NLL NA+K+T G + +++ + I + D G GI IP Sbjct: 470 TVESNEYLLRQLLTNLLDNAIKYTHESGDIRLSISP-AEETIQIEVSDTGIGIPHEHIPR 528 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A G GLGL I + I+ H G ++S + +G ILP + Sbjct: 529 IFERFYRIDPARSREMGGTGLGLSIVKHIVNLHNGAIKLKSTVGKGSTFTVILPQKQEKP 588 Query: 480 FI 481 Sbjct: 589 SA 590 >gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 462 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 9/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L++ + ++ AEE N KS FLA+MSHE+RTPLNAI+GFS ++ E + Sbjct: 211 ITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTEV----SE 266 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E EY+ I R+ + LL LIN+ILDLS+IEAG E + + + +V E +R Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K++ + ++ D++ + QV N +SNA+KFTA G + + G Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAA-GSITIGYGMPENSYIRFY 385 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI+ + F + S +QG GLGL I+Q+I+ G+ + S+L + Sbjct: 386 VTDTGTGISSENAQGIFNRFVKLD----SFKQGTGLGLAISQNIVKELKGEIGVESQLSK 441 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 442 GSTFWFTLPFYK 453 >gi|304317402|ref|YP_003852547.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778904|gb|ADL69463.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 462 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 147/336 (43%), Gaps = 18/336 (5%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 +I L+ + +F F ++ L +I+ + LA +S+ T Sbjct: 137 IIGIIVLAQPLNLAEIAMNNLFQLFIILIPFLIVISILGGFL----LANRALRPISYMTK 192 Query: 203 ITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I + ++ L+ D++ + + D + +E + +F SHELR Sbjct: 193 IAREISMGDLSKRLNLPYTNDEVGHLAQTFDMMID----KIDESIKKQKQFTNDASHELR 248 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TP+ I G +E + + E YK + I +H+ L++ +L L+R ++ +L Sbjct: 249 TPIAVIQGQAESMLEN---NHDIEEYKRTLSIIFDEARHMGKLVSNLLLLARSDSNTDKL 305 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + +++ +++ + L+ A+ N+++ + LS ++ D+ + Q+ N++ NA+ Sbjct: 306 NMESLNFSELLEGIVEELKPVAKSNNVDLCLTKNE-LSYIYGDQTRLTQLFYNIIDNAII 364 Query: 382 FTAIGGRVHVTVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + GG ++V V G YI SI+D G GI E I + F + A G G Sbjct: 365 YNLPGGHINVVV---ENNGYYIKTSIQDTGIGIPEEHINHIFERFYRVDKARSRQSGGNG 421 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL I Q I HGG+ + SK G I LP Sbjct: 422 LGLSICQWIATVHGGKIDVISKEGHGSTFIVWLPAK 457 >gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003] Length = 350 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%) Query: 224 LIAELEVAKSLSDETRKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L+ E +S+ R EE KS F+ ++SHELRTP++ + G+SE I Sbjct: 93 LLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--A 150 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 ++E +E+ I+ + L+N++LDL+R+EAG ++ + L ++R+ I + Sbjct: 151 QSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDV 210 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSG 398 A+E +E+ +++ D M QV++NL+ NA++ T G+V + Sbjct: 211 LAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEA 270 Query: 399 R-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQF 456 R I++ DNG GIAE +IP + F + A K + G G+GL I ++I+ H G+ Sbjct: 271 RSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKI 330 Query: 457 LIRSKLREGVEVIAILPNTR 476 + S+L +G + I LP + Sbjct: 331 SVESELGKGSDFIITLPLYK 350 >gi|329930360|ref|ZP_08283949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328935086|gb|EGG31572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 683 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 92/477 (19%), Positives = 177/477 (37%), Gaps = 20/477 (4%) Query: 6 KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65 K++E V + + L + + + + L ++V Sbjct: 207 KSRETAVFVDLMTLAGFLIPAMYFLLLYRMQRNEKSLLYLGLFCLSSMIYVATHGQKLLS 266 Query: 66 FTQNPIFPMWSLIT-LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLL 124 + W + L A + + ++ ++ W + L I + L Sbjct: 267 SVWPDLSYEWFIRIQLVFSAFVYYFLLRYIAEAVQGL-IHRWALRLSNAATMIAVGIGL- 324 Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 + ++ IY + +I + + + F + + Sbjct: 325 -ALPTVVFSKMEPVIYMFSVFIIGYITFVMGRGIWRRSADTEFMVIGI------------ 371 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + LS +L + L A + D+ +R Sbjct: 372 -LSIMVVIAVHVLSLMGVYNSLAIVPLEMLLFVVTQAMLLAQRFSRAFTDVDQLSRRLLT 430 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F+A+ SHELRTPL+ I+ ++ + + G +++ +E + I +G+ L L Sbjct: 431 LDGLKDEFMANTSHELRTPLHGIVNIAQSLMDGSSGSVSDRQSRE-LSMIVSTGKRLSTL 489 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +N+ILD S+++ G L + L + + + ++ A K + + Q+ +L + D Sbjct: 490 VNDILDFSKLKNGEIVLKRQPVDLKAVTQSVLEVVTHLAAGKPLSLKQEWPDNLPWLDTD 549 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 E +RQ++ NLL NAVKFT G V VT +S+ D G GI+ + V S+ Sbjct: 550 EDRLRQILYNLLGNAVKFTET-GTVQVTAHAL-NGHVRVSVTDTGIGISPERLIDVFKSY 607 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 Q A G G+GL I + ++ GG+ S G LP+T++ Sbjct: 608 DQIGYASDREYSGTGIGLSITKKLVELGGGEIWAESMPGAGSAFHFTLPSTQIPPQA 664 >gi|325679103|ref|ZP_08158697.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324109227|gb|EGC03449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 1329 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 144/253 (56%), Gaps = 10/253 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE---TYKEYIGDI 294 ++ AE N AKSRFLA+MSHE+RTP+N I+G +E++ E + N + Y DI Sbjct: 797 AKEEAERANSAKSRFLANMSHEIRTPINTIMGMNEMLLREDPTGVPNSYFMSVMNYAFDI 856 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + + LL LIN++LD+S+IE+G+ L E + D++R + ++++R+ EK + + Sbjct: 857 RNASESLLGLINDLLDMSKIESGKMHLVEQEYDVQDMLRSAVALIRVRSVEKALTFDVAV 916 Query: 355 DPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNG 409 D + ++ D ++Q+++NLLSNAVK+T +GG + ++V T G S++D G Sbjct: 917 DEVMPRRMFGDMGKIKQILVNLLSNAVKYTTVGG-IMLSVTMTEREGDTASLRFSVRDTG 975 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + ++ + ++ + + S +G GLGL I+ A GG+ S REG E I Sbjct: 976 IGIKQEDMGKLFNAYERLDEELNSGIEGTGLGLDISGRFAALMGGKIECESVYREGSEFI 1035 Query: 470 AILPNTRVLNFIP 482 + R+++ P Sbjct: 1036 FTV-KQRIVDARP 1047 >gi|229167896|ref|ZP_04295627.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621] gi|228615536|gb|EEK72630.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621] Length = 448 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L +L +++ I ML+ + +EK+I Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + + DE + QV N+ +N++KF+ GG + V ISI DN Sbjct: 326 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442 Query: 469 IAILPN 474 LP Sbjct: 443 RVELPK 448 >gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 607 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 4/231 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ + F++++SHELRTPL + + E + + E ++ + ++ Sbjct: 371 EKIDMERRDFVSNVSHELRTPLTTMRSYLEALAEGAW--QDEEIAPRFLSVTQDETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y ++ I + + I + ++ +N+ +++ + V Sbjct: 429 RLVNDLLQLSKMDSKDYRFNKEWIEFVGFFHQIIDRFE-MSKNQNVTFKRQLPKTALFVE 487 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + QV+ N++SNA+K++ GG + V + +S+ D G GI + + + Sbjct: 488 IDKDKLTQVLDNIISNALKYSPEGGLIAFNV-VEKDKMIVVSVSDQGLGIPQDNLSKIFE 546 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL IA+ +++ HGG SK +G + LP Sbjct: 547 RFYRVDKARSRQMGGTGLGLAIAKEMISAHGGNIWAESKEGKGTTISFSLP 597 >gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 761 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 8/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ E R AE N AKS FLA+MSHE+RTPLN ++G ++ + + Sbjct: 360 ITDLKRDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTELDH--- 416 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + I SG L L+++ILDL+R+E+GR E+++ L + E + A Sbjct: 417 -DQREILNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPAA 475 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401 EK ++ F IDP+ V D ++QV+ NL+SNAVKFTA G ++ VG Sbjct: 476 EKGLQFFVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKGFVSLNAAVGRDRDGAAI 535 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++D G G + T F Q I G GLGL I + + GG S Sbjct: 536 LRFTVEDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDCES 595 Query: 461 KLREGVEVIAILPN 474 + G I LP Sbjct: 596 EAGGGSTFILTLPL 609 >gi|239947837|ref|ZP_04699590.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922113|gb|EER22137.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 497 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLETNRNLKAQIVKLEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++ +I+++ Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + ++ + AD K ++QV LNLLSNAVKFT GG V + + + Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ EG + Sbjct: 477 SKINEGTTITITF 489 >gi|228932680|ref|ZP_04095554.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826998|gb|EEM72758.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 466 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKICILTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum] Length = 1670 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 14/266 (5%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + A E K++F+ ++SHELRTP + I+G S+++ + T ++ I I Sbjct: 1030 RQAEMAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTN----TQRDNIDSIK 1085 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RS L++LIN+ILD S++E G+ L + L+ ++ E + A K I++ + Sbjct: 1086 RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMG 1145 Query: 356 ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409 P ++ D +++V+LNL+ NAVKFT G + ++ + SG ++KD+G Sbjct: 1146 RDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSG 1205 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS---KLREGV 466 GI E +I + FGQ + G GLGL + ++A GG + S + +G Sbjct: 1206 IGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGT 1265 Query: 467 EVIAILPNTRVLNF-IPEDNHESTQY 491 + + +P + Q+ Sbjct: 1266 TFWFAIKVSISSPSYLPNSVPAANQF 1291 >gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1169 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 9/280 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + + D I V + ++ AE N AKS FLA+MSHE+RTP+N+ILG ++++ Sbjct: 672 VRERKTADGSIVGFRVDITELMHAKQAAEAANRAKSEFLATMSHEIRTPMNSILGMAQIL 731 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 +++ ++Y I SG+ LL ++N++LDL+++E+GR EL + + ++ Sbjct: 732 ---CGPDVSDPRSRDYGRVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQLAQD 788 Query: 335 CIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + + + AQ K + I + D P AD ++Q++ NL+SNA+KFTAI G V + + Sbjct: 789 ILALFRGVAQGKGLIISAEWDGPRTQEYLADGYRLKQMLSNLVSNALKFTAI-GSVDIRI 847 Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 S+ D G GI+ + + F Q + G GLGL I + + Sbjct: 848 SEIDRTNDFATLEFSVTDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRHLA 907 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GG+ + S+ ++G + +P + + +T Sbjct: 908 ELMGGEAGLESEEKKGSRLWFRIPAPLATSTSAANESNAT 947 >gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4] gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1671 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 14/266 (5%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + A E K++F+ ++SHELRTP + I+G S+++ + T ++ I I Sbjct: 1031 RQAEMAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTN----TQRDNIDSIK 1086 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RS L++LIN+ILD S++E G+ L + L+ ++ E + A K I++ + Sbjct: 1087 RSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMG 1146 Query: 356 ---PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQ--YISIKDNG 409 P ++ D +++V+LNL+ NAVKFT G + ++ + SG ++KD+G Sbjct: 1147 RDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSG 1206 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS---KLREGV 466 GI E +I + FGQ + G GLGL + ++A GG + S + +G Sbjct: 1207 IGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGT 1266 Query: 467 EVIAILPNTRVLNF-IPEDNHESTQY 491 + + +P + Q+ Sbjct: 1267 TFWFAIKVSISSPSYLPNSVPAANQF 1292 >gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 663 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 23/282 (8%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + I+ + E +++ + E +++AE N AKS FLA+MSHELR+PLNA Sbjct: 147 ILNDLAGIVMDEIELRLAARKVDELNAELAEAKEKAEVANEAKSIFLANMSHELRSPLNA 206 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILGFS+++ P + E +G I RSG+HLL+LIN +LDLS+IEAG L+E Sbjct: 207 ILGFSQIMTRSKTLPS---EHIENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNF 263 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 L ++ + M L+A ++ +++ + P + V DE +RQ+++NLL+NA+KFT + Sbjct: 264 DLYRLLDDLEDMFHLKADDRRLQLIFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQV 323 Query: 386 GGRVHVTV-----------------GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 GG V V V + ++D+GPGIA E+ ++ F Q Sbjct: 324 GG-VSVRVVTDGGSLVTGTATKQITDESEKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQ 382 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 K A++G GLGLPI++ + GG+ + S++ G Sbjct: 383 TG-KEAQEGTGLGLPISRKFVQLMGGEIAVSSEVGSGTNFKF 423 >gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1686 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAILG S ++ + ++Y+G +H++ LL ++ Sbjct: 960 NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1015 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEA + ++ + L D++ ++ + +EKN+ + P L + D Sbjct: 1016 NDILDFSKIEAEKMDIECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1075 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421 + Q+++N +NAVKF+ V ++ Q ++D G GI E + + Sbjct: 1076 GLRLGQILINYCNNAVKFSHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLF 1135 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 SF Q + G GLGL I + + GG+ S+L G L Sbjct: 1136 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYVRL 1186 >gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842] gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis serovar sotto str. T04001] gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842] gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis serovar sotto str. T04001] Length = 613 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E + F+A++SHELRTPL + + E + N ++ + ++ Sbjct: 377 ERIEGERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMI 434 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N +L LS++++ + L + + D I + ++E+N+ + + Sbjct: 435 RLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFID 493 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QV+ N++SNA+K++ GG V + G IS+ D G GI + + + Sbjct: 494 MDTDKITQVLYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFE 552 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 553 RFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 12/342 (3%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 +++L L + L F + + VL + + A ++ + Sbjct: 1275 VASLRQEALAEDLHLKFGSLPGGPWPEPATRALVLPVPMGADTAGMGVLVAGLSPLVALD 1334 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAI 267 + Q L A + A++ ++ ++RAEE + AK+ F +++SHE RTPL I Sbjct: 1335 DEYRGFLQLLARQLAASISSARAY-EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLI 1393 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG E + L E + + R+ L ++N +LD SR+EAGR + + Sbjct: 1394 LGPVEDALSKPAKALTGEK----LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVD 1449 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + R Q + + + P ++ D + +V+LNLLSNAVK+T G Sbjct: 1450 LSAVTRNLASAFQSAVESAGLRLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYE-G 1508 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + W ++++D G GI E E+P V F + + +G G+GL + Q Sbjct: 1509 EIRVVLRWQ-DDHAVLTVQDTGVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQE 1567 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 +M HGG + S L EG LP R +P + E T Sbjct: 1568 LMKLHGGSISVESTLGEGTAFTLRLP--RGSAHLPPERIERT 1607 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 31/425 (7%) Query: 86 NLSLGKKVMNSDIKIGEVYVWRI-----WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 + +++ R + + L+ + E + Sbjct: 180 RVLGERRLRTLRDLAARAGPVRREQDAWREAAQVLEGNVLDVPFALLYRMSDAGERPELV 239 Query: 141 KSATLLI--ALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 ++A A ++S + + P V + A Sbjct: 240 ETAGWGTDTAAAVSLMGAPQANLLWPFADAAATLTPQFVPDVRARFAELPRGTWPEAPHS 299 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDD-----------LIAELEVAKSLSDETRKRA 242 A L + L V LS + DD IA + +E +KRA Sbjct: 300 AWVLPISRSGSKRLHGFLVAGLSARRAPDDDYRGFLGLVADHIATAISSACAYEEEKKRA 359 Query: 243 EEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E + K+ F ++SHELRTPL +LG E +T PL +E +HR+G Sbjct: 360 EALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPL-PPKQRERQEVVHRNGL 418 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N +LD +R+EAGR + S L + E + + Sbjct: 419 RLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPE 478 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +V+ D +V+LNLLSNA+KFT G V + + W G ++++D G G+ E E+P Sbjct: 479 AVYVDPAMWEKVVLNLLSNALKFTLQ-GEVRIALRWL-GDRVELTVQDTGTGMPEAELPR 536 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A + +G G+GL + Q ++ HGG ++S L +G LP Sbjct: 537 IFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPAG--AA 594 Query: 480 FIPED 484 +P++ Sbjct: 595 HLPQE 599 Score = 242 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 13/276 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +T L S ++ + +AE+ A +E +E+R+ + LA +SH Sbjct: 749 LLARVTALLTVSQLRQAAVRAER----AHVEDTLRFLEESRR----ATRLREDMLAVVSH 800 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 +LR+PL AI +E++ + I RS + LI+++LDL+ I+AG Sbjct: 801 DLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASIDAGT 860 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + + ++VR+ + + A EK +++ +++P L + D++ + Q + NLLSN Sbjct: 861 LSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI-LSCDKERILQALGNLLSN 919 Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A+KFT GG + + G +S+ D GPGI P + + +++ +G Sbjct: 920 AIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYW---HGVQNKREG 976 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL IA+ I+ +HGG+ + EG LP Sbjct: 977 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 9/266 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L + +A + ++ +K E + FL +SHELRTP++A+ + Sbjct: 1763 RELLVRVRTHLDMARVRREVVRNEIEKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQ 1822 Query: 273 VIELETMGPLNNETYKEYI----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 + +E E + + L L+ ++LD S G +L+ + L Sbjct: 1823 SLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDL 1882 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + Q +A + PS + D + Q++ LL NA+KF G Sbjct: 1883 SGVASAVVEQAQSKAAHAGCVLTLN-APSPVMGYCDRARLHQLLEGLLDNALKF-GAGKP 1940 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + V V W +++ D+G GI + + F + + G GLGL I++ I Sbjct: 1941 IEVAV-WRDSDHALLTVMDHGAGIEPEDEERIFGRFERAVS--EKNYGGFGLGLWISRHI 1997 Query: 449 MANHGGQFLIRSKLREGVEVIAILPN 474 H G +R G LP Sbjct: 1998 AEAHDGSIRLRPTEGGGATFTVALPL 2023 >gi|213968170|ref|ZP_03396315.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301383824|ref|ZP_07232242.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058498|ref|ZP_07250039.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133390|ref|ZP_07259380.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927150|gb|EEB60700.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 641 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 14/274 (5%) Query: 215 LSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 ++ AE + E + + + +TR+ AE N AKS FLA MSHELRTP+N +LG ++ Sbjct: 228 INSLAENLHRTSLEQQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGMLQL 287 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 +E M + EY S +HLL +IN+ILD SRIE ++ A +L ++V Sbjct: 288 METTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAELVS 343 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 A ++ + + + P L +V D +RQ+++NL+ NA+KFT G+V V Sbjct: 344 VSTHAFNHSALQRKLLLELHVQPGLEAMTVIGDPTRIRQILVNLIGNALKFTEE-GKVCV 402 Query: 392 TVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 W + + D+G GI + ++ +F Q +I G GLGLPIA+ Sbjct: 403 EADWLMLDDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARK 462 Query: 448 IMANHGGQFLIRSKLREGVEVI--AILPNTRVLN 479 + GG S G LP +R ++ Sbjct: 463 LAERMGGTLYAESVEGAGSAFTLQIALPVSRYVS 496 >gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102] Length = 1372 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 14/247 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS+FLA+MSHE+RTP+ +LG +E++ + +E ++Y+ +I S LL +IN Sbjct: 797 RLKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYLDNIQSSATSLLTVIN 852 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVWA 363 +ILD S++E+GR ++ E SL +V+E + ML+ + KN++ I + V Sbjct: 853 DILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIG 912 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D +RQ+I NLL+N++KFT G V +V S ++D G GI E Sbjct: 913 DPGRVRQIITNLLTNSIKFTNQ-GYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKR 971 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F QG + G GLGL I ++++ G+ ++ S + G + +P + Sbjct: 972 LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNK--P 1029 Query: 480 FIPEDNH 486 P +H Sbjct: 1030 HGPRQSH 1036 >gi|154250887|ref|YP_001411711.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154154837|gb|ABS62054.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 664 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 97/471 (20%), Positives = 183/471 (38%), Gaps = 24/471 (5%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSPI---LPLFVLLVANIGTWFTQNPIFPMWSLITL 80 + I+ V+ L + +LV + + T Sbjct: 60 PGTVRRNPPIETRIVAEQVKLLLSLGEASRWTIFGGILVVGLAFYQTAPIWATAVVAAIQ 119 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYV-WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI 139 + + N+D E W + + G W + L+ + + Sbjct: 120 LIAQFAFDRVRAGFNADPDNVEHAPKWAHRYALVTLISGATWGVGALLWLPDSSFAHEVF 179 Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 Y + + ++ +A+S P AV + L ++ + + Sbjct: 180 YMAVLAALVMA-TAVSRATYPPAVIYYTLSSCLPAVIMFATRGDALSVAAVLLALMFFAT 238 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-------TRKRAEEENLAKSRF 252 T + + + + E DL+ + A + +++ RA+ AK F Sbjct: 239 IMGWTRRINEGYREAFRLRFENADLVERMARAHAATEQRRRDAEEAEARAKAAMQAKQEF 298 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 L +SHE+R PL+ + + + E + NET + I + Q L L+++++D S Sbjct: 299 LDIISHEVREPLDGLRNMALYLGDEAV----NETQIKIAASIEETSQLLRRLVDDMIDFS 354 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQV 371 IE+ EL + +++ + M++ +A + + + + P + ++ AD +RQV Sbjct: 355 EIESKSLELKPRSFDPVELTASVVRMMRHQAVTRGLSLELDVAPGIDALMTADADRLRQV 414 Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGS 428 + NL+ NA+KFT GG V V T G S+ D GPG+AE + +F QG+ Sbjct: 415 LSNLIGNAIKFTYQGGVVVRVASLKTPGGETVFRFSVTDTGPGLAEDARARLFEAFTQGA 474 Query: 429 IAIKSAEQ----GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A GVGLGLPI++ ++ GG + S + +G +LP+ Sbjct: 475 DARDYRFSGQTAGVGLGLPISERLVRLMGGHIDVDSTVGQGSTFWFLLPSE 525 >gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] Length = 1135 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 12/294 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + + + + + + E+E+ R A + A Sbjct: 247 LNLLQQDLVRTLRRLYVSFQELKEHAEQTEDDLRLAFDEMEMQNISIRNARDAAISTSQA 306 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA++SHELRTPLN+I GF ++ N Y+ I +S HLL L+N++ Sbjct: 307 KSAFLANISHELRTPLNSIDGFINLLARHG---ELNPEQDLYVQTIRKSSAHLLALVNDV 363 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEAG+ L L D + + + ML + EK + + + V D Sbjct: 364 LDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRVNGDALR 423 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++QV+ N++ NA+KFT G V V V IS++D+G GI+ + + SF Sbjct: 424 LKQVLTNIVGNAIKFTDS-GDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 482 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-----RSKLREGVEVIAILPN 474 QG +I G GLGL I++ + GG + +G +P Sbjct: 483 QGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATFWFRMPA 536 >gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1681 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAILG S ++ + ++Y+G +H++ LL ++ Sbjct: 959 NRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGIL 1014 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N+ILD S+IEA + ++ + L D++ ++ + +EKN+ + P L + D Sbjct: 1015 NDILDFSKIEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGD 1074 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVL 421 + Q+++N +NAVKF+ V ++ Q ++D G GI + + + Sbjct: 1075 GLRLGQILINYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQKQGVLF 1134 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 SF Q + G GLGL I + + GG+ S+L G L Sbjct: 1135 GSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185 >gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 391 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + A++ +++AE+ +++KS FLA+MSHE+RTPLNAI GF+ Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ E +Y I + L+ L+N+ILD+S+IEAG E ++ + + + Sbjct: 190 EVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLL 245 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + Q+R E I +P S + D + QV+ N NA+KFT G Sbjct: 246 LSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303 Query: 390 HVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G+ + Y +KD G GI ++P V F + ++G GLGL I+Q+I Sbjct: 304 -IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 +A GGQ S EG +P Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383 >gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 856 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 10/231 (4%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+ FLA+MSHE+RTP+N ++G ++V+ + ++ I I SG+ LL +IN+I Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLADGGLTH---RQRDSIETIRASGETLLTIINDI 540 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+ E+G EL L ++ C+ +L+ A +K++++ + + V D Sbjct: 541 LDFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAAR 600 Query: 368 MRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVL 421 +RQ+++NL+ NAVKFT G V+VT + + +++D G GI + + Sbjct: 601 LRQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLF 660 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q + G GLGL I + + G+ + S+ G + Sbjct: 661 KPFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGSTFSFTI 711 >gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] Length = 615 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 8/236 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + RF++++SHELRTPL ++ + E + + E ++ ++ +I Sbjct: 375 DQDRKRFVSNVSHELRTPLTSMKSYIEALVEGAW--KDPEVAPNFLKVTQEETDRMMRMI 432 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-----EKNIEIFQKIDPSLSS 360 N++L+LSR++ G L ++L ++ + + + +KN I + Sbjct: 433 NDLLNLSRMDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYSIKRDFTRRDIW 492 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++QV+ N+++NA+K++ GG + + T +SI D G GI + I + Sbjct: 493 VEVDTDKIQQVLDNIMNNAIKYSPDGGIITCRLLETHNH-VIMSITDQGLGIPKDSISHI 551 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A A+ G GLGL I++ ++ HGG+ + S+ EG LP Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFYISLPYEP 607 >gi|297529462|ref|YP_003670737.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252714|gb|ADI26160.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 468 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 11/342 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT- 204 ++A+ + L L A++L V +T+ + ++ + Sbjct: 130 VMAVVVPLLDGKRLEGAIYLYLPLADVQEATKRAAAAFWPLAAIFAAALLVVGRRMVRQM 189 Query: 205 ----YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE---ENLAKSRFLASMS 257 + ++ ++ + E D + + L++ + A+ E+ K FLA++S Sbjct: 190 TEPLQAMEQAAERMAEGRYEADIPVRSDDEIGRLAEAFNQMADAIAKEDERKREFLANVS 249 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPL+ + G+SE + E K Y+ IHR + + L+ ++LDL+R+E Sbjct: 250 HELRTPLSYMKGYSEALLAGL--AKTKEEEKAYLRLIHRETERMERLVRDLLDLARLEGQ 307 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 L + ++ ++ + I + A +K IE+ ++D + V D + QV+ NLL Sbjct: 308 SVPLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-VNGDADRLEQVVRNLLD 366 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+++T GG + V + S + I+D G GI + ++P + F + A E G Sbjct: 367 NAIRYTPEGGVMTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGG 426 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I + I++ H G S L G+ V LP R Sbjct: 427 TGLGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPLVREEE 468 >gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1334 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 152/387 (39%), Gaps = 35/387 (9%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L + + L I + L L + + + Sbjct: 625 LPPDYVTISSGLGRVVPTALVLLPIVVEGQVLGVIELASVTPFTQIHQDFLAQLMETVGV 684 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS------- 235 +V I L +T L + + ++ + Q E AELE +L Sbjct: 685 NVSTIVANARTDELLVESQRLTAELQQRSAELQTQQEELQHSNAELEEKAALLATQNRDI 744 Query: 236 -------DETRKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 ++ R+ E + KS FLA+MSHELRTPLN+ L + + Sbjct: 745 EAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNS-LLILAQLLAQNPSR 803 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + EY IH +G LL LIN+ILDLS++EAG+ ++S ++L ++ + Sbjct: 804 NLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRP 863 Query: 342 RAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +KN++ P + + D+ +RQV+ NLLSNAVKFT GG V + + + Sbjct: 864 MTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELRIEPATDDE 922 Query: 401 Q-----------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +KD G GI E + ++ +F Q G GLGL I + I Sbjct: 923 VPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIA 982 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTR 476 GG + S +G LP TR Sbjct: 983 HLLGGAVTVDSVAGQGSTFTLFLPVTR 1009 >gi|254521965|ref|ZP_05134020.1| sensory box sensor histidine kinase/response regulator [Stenotrophomonas sp. SKA14] gi|219719556|gb|EED38081.1| sensory box sensor histidine kinase/response regulator [Stenotrophomonas sp. SKA14] Length = 733 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 141/315 (44%), Gaps = 13/315 (4%) Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + V + A L L + AE+D L E L Sbjct: 1 MPLWSVLLVALGAAAIALLLLGLRLRTRGRALELLQRERSVLAAERDQLRHTTERQGQLE 60 Query: 236 DETRK---RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + + AE LAK FLA+MSHE+RTPLN IL E+I +G E ++ + Sbjct: 61 QQLLQAKQAAEAAVLAKGEFLATMSHEIRTPLNGILPMLELIARGPLG----EDQRQMLA 116 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 S Q LL ++++ILD SR+EA EL ++ +L D++ + ++Q A K + + Sbjct: 117 TASASSQQLLRIVDDILDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLTL 176 Query: 353 KIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKD 407 ++DP++ V D +RQV+ NLL+NA+KFTA G+V + V I D Sbjct: 177 QLDPAVRLPVRGDPVRLRQVLSNLLANAIKFTAR-GQVLLRVQRLGEGAAQHQLRFEIID 235 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI E + SF Q + G GLGL I + I+ G+ ++S +G Sbjct: 236 TGIGIDEVLQARLFQSFSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGAT 295 Query: 468 VIAILPNTRVLNFIP 482 +P +V +P Sbjct: 296 FWFEIPLLKVPGDLP 310 >gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1223 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 155/395 (39%), Gaps = 21/395 (5%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIALSI 151 S L + G+ + + ++ S I Sbjct: 700 YRVSIENALRRSESSYRALADNLPNGVVLLVDPADILRVAAGQGLHSLLDSGAPCIPAPY 759 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + L + + + +S + + H A + T+ Sbjct: 760 TTILPSPL------ATELMPLIMSARHGTTAHREIPYGAAVFDVVALPLPGETHRTEGVA 813 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + + +R A + KS+F+A++SHE+RTPL+ ILG + Sbjct: 814 HDVMLL----LQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIA 869 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +V P + Y + + LL +IN++LD SR+EAGR L + L Sbjct: 870 DVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTT 926 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 VR+ + L ++A+ K + + + L ++ D +RQ+++NL+ NAVKFT G VH Sbjct: 927 VRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQ-GTVH 985 Query: 391 VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V V G +I+D GPGI ++ + SF Q + G GLGL I+ Sbjct: 986 VDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAIS 1045 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + ++ GG ++S EG LP + Sbjct: 1046 RHLVELQGGDIGVQSTPGEGSVFWFTLPLGDIHPA 1080 >gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 525 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263 ++ + + +L+A + ++ +S+E R +AE N AK+RFLA++SHELRTP Sbjct: 195 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 254 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS+V+ E G L N+ +EY+ IH+SG HLL+++N +LD+S+IEAGRYEL Sbjct: 255 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 314 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + + C ML +A+EK + + ++ S+ + AD++ +Q+++NL+ NA+KFT Sbjct: 315 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 374 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V G +++ D G GIA ++ + F Q +G GLGL Sbjct: 375 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 433 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + HGG IRS EG ++ +P Sbjct: 434 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 463 >gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1110 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 16/270 (5%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + ++L ++ + ++ + N K RF+A+ SHELRTPL++I+GFSE++ Sbjct: 401 ELEELTNNLEEKVLERTNALEKMNRELVRANELKGRFIANASHELRTPLHSIIGFSEILL 460 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 +T G L E + Y+ I S +HLL L+N ILDL++I+AG+ E+S + ++ E Sbjct: 461 QKTFGDLT-EKQQRYLNTIFGSAKHLLYLVNNILDLAKIDAGKAEISYQTFPVKSVIDEV 519 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +++++ A K I + + AD+ +Q++ NL+SNA+KFTA G V + + Sbjct: 520 LVVIRPLADRKMIVPETVVHHDV-YFTADKIKFKQILYNLISNAIKFTADSGNVGIAIEK 578 Query: 396 ------------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 S +S+ D G GI + + F Q + +G GLGL Sbjct: 579 IISDKKTFPWVTESQEFLKVSVWDTGIGIKPEDRERIFEEFEQIDSSKS--TEGTGLGLS 636 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + ++ HGG + +G +P Sbjct: 637 LTKKLVEIHGGHITVEGIYGQGSVFNVYMP 666 >gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1196 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 12/250 (4%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AEE + AKS FLA+MSHE+RTP+N +L ++++E + +E I S L Sbjct: 529 AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL----PAEQREMARVIRDSATSL 584 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 L +IN+ILD S+IEA + +L +SL ++V +L +RAQEK I + +DP+L+ Sbjct: 585 LTIINDILDFSKIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDM 644 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGE 416 V D +RQ+I NL NA+KFT G V + V R + SI D G G+ + Sbjct: 645 VVGDPIRLRQIITNLAGNAIKFTDK-GYVRIAVRALDPRERPLRLEFSITDTGIGLDSEQ 703 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F Q I I G GLGL I + ++A GG+ +RS + +G +P Sbjct: 704 QARLFEPFMQADITISRRYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGSTFWFQVPLEP 763 Query: 477 --VLNFIPED 484 V P D Sbjct: 764 AEVEAEPPLD 773 >gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] Length = 1320 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + + R RA+E AKS FLA+MSHE+RTP+NAI+G S ++ + Sbjct: 521 ADITERKRMEGELRVARDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTEL--- 577 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 ++ +Y+ I ++GQHLL +IN+ILDLS+IEAG+ + + L + ++ + Sbjct: 578 -SQRQHDYLRKIQQAGQHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEK 636 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRG 400 A K +E+ I P + + D + Q+++N +NAVKFT G V + V + Sbjct: 637 AHAKGLELIFDIAPDVPQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERTDHD 696 Query: 401 QYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + ++ D G G++ + + SF Q + G GLGL I+ + GG + Sbjct: 697 VLLYCAVHDTGIGLSVEQQKRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTVGV 756 Query: 459 RSKLREGVEVIAI 471 S+L G Sbjct: 757 SSQLGRGSTFWFT 769 >gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 812 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 10/267 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 ++S L D+ + E ++ R +AEE N KS FLA++SHE+RTPLNAI Sbjct: 549 YQSPNPRLELVEVNYDITVQKET-EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAI 607 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +GFS+++ M + +E+ I ++ LL L ++I+DLS+I+AG +E + Sbjct: 608 VGFSDLL----MTVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVC 663 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + ++ + E + P + AD + QV+ N +SNA+KFT G Sbjct: 664 LYQFCAMMVQKMRNKVPEGVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHR-G 722 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + + + ++D G GI+ V F + S QG GLGLP+ +S Sbjct: 723 TITVGYRIDTRQQLEMFVEDTGIGISIENQEAVFDRFMKVD----SFVQGTGLGLPLCKS 778 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPN 474 I+ GG + S+L +G LP Sbjct: 779 IIEKMGGHIGVISELGKGSRFWFTLPA 805 >gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 1169 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 12/294 (4%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + + + + + + E+E+ R A + A Sbjct: 250 LNLLQQDLVRTLRRLYVSFQELKEHAEQTEDDLRLAFDEMEMQNISIRNARDAAISTSQA 309 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA++SHELRTPLN+I GF ++ N Y+ I +S HLL L+N++ Sbjct: 310 KSAFLANISHELRTPLNSIDGFINLLARHG---ELNPEQDLYVQTIRKSSAHLLALVNDV 366 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEAG+ L L D + + + ML + EK + + + + D Sbjct: 367 LDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRINGDALR 426 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++QV+ N++ NA+KFT G V V V IS++D+G GI+ + + SF Sbjct: 427 LKQVLTNIVGNAIKFTDS-GDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 485 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI-----RSKLREGVEVIAILPN 474 QG +I G GLGL I++ + GG + +G +P Sbjct: 486 QGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATFWFRMPA 539 >gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] Length = 1535 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E KRAEE N KS FLA++SHELRTPLN LG + + ++Y+ R Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1195 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SGQ+L+ L+++ILDLSRIEAG+ + + ++V E L A K I + I P Sbjct: 1196 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIKELVDEVFSTFSLDATGKGITLETTIAP 1255 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412 + V D +RQ + NL+ NAVKFT GG RV + G + +++D GPGI Sbjct: 1256 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1315 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E I ++ F Q + G+GLGL I +M GG + S G + + Sbjct: 1316 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPNMGTAMHFAI 1375 Query: 473 PNTR 476 P + Sbjct: 1376 PVGK 1379 >gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227] Length = 880 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 382 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 437 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 555 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 556 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 615 Query: 469 IAILPN 474 +P Sbjct: 616 TVRIPL 621 >gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] Length = 429 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S F+A++SHEL+TPL +I GF E ++ ++ T ++ I L LI++ Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS +E + L + + D+ +E + Q A EKNIE+ K D S+ +++ Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++QV LNL+ NA+K+T G V V V I + DNG GI + ++ + F + Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ + G ++S+L G E I + Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422 >gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] Length = 441 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S F+A++SHEL+TPL +I GF E ++ ++ T ++ I L LI++ Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS +E + L + + D+ +E + Q A EKNIE+ K D S+ +++ Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++QV LNL+ NA+K+T G V V V I + DNG GI + ++ + F + Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ + G ++S+L G E I + Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422 >gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 441 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S F+A++SHEL+TPL +I GF E ++ ++ T ++ I L LI++ Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS +E + L + + D+ +E + Q A EKNIE+ K D S+ +++ Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++QV LNL+ NA+K+T G V V V I + DNG GI + ++ + F + Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ + G ++S+L G E I + Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422 >gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4] Length = 606 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 8/245 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ ++ + F+A++SHELRTPL + + E + M ++ + ++ Sbjct: 370 EKIDMDRREFVANVSHELRTPLTTMRSYLEALAEGAMDDPTIAPQ--FLKVTQDETERMI 427 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y ++ I I I + ++ +++ +++ V Sbjct: 428 RLVNDLLQLSKMDSRDYYFNKEWIPFIRFFDGIIDRFE-MSKAQHVTFKRELPDEQILVE 486 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + QVI N++SNA+K++ GG V V ISIKD G GI + + + Sbjct: 487 IDPDKLTQVIDNIISNALKYSPDGGTVTFGVDIQEE-FIVISIKDQGMGIPKDNLDKIFE 545 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F + A G GLGL IA+ ++ HGG SK EG + LP Sbjct: 546 RFYRVDKARSRQMGGTGLGLAIAKEMIYTHGGDIWADSKEGEGTTIFFTLP----YESTQ 601 Query: 483 EDNHE 487 ED E Sbjct: 602 EDEWE 606 >gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile] gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 429 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S F+A++SHEL+TPL +I GF E ++ ++ T ++ I L LI++ Sbjct: 202 MRSDFVANVSHELKTPLTSISGFVETLKSNE--NIDVNTRNRFLEIIESESDRLKRLIDD 259 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS +E + L + + D+ +E + Q A EKNIE+ K D S+ +++ Sbjct: 260 ILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSISILSNKDY 318 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++QV LNL+ NA+K+T G V V V I + DNG GI + ++ + F + Sbjct: 319 IKQVFLNLVDNAIKYTQDNGIVQVVV-LKDEEKIVIKVIDNGVGIPKEDVERIFERFYRV 377 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ + G ++S+L G E I + Sbjct: 378 DKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTI 422 >gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1223 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 155/395 (39%), Gaps = 21/395 (5%) Query: 93 VMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL-VEPGTWTPEYLTIYKSATLLIALSI 151 S L + G+ + + ++ S I Sbjct: 700 YRVSIENALRRSESSYRALADNLPNGVVLLVDPADILRVAAGQGLHSLLDSGAPCIPAPY 759 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 + + L + + + +S + + H A + T+ Sbjct: 760 TTILPSPL------ATELMPLIMSARHGTTAHREIPYGAAVFDVVALPLPGETHRTEGVA 813 Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ + + + +R A + KS+F+A++SHE+RTPL+ ILG + Sbjct: 814 HDVMLL----LQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIA 869 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +V P + Y + + LL +IN++LD SR+EAGR L + L Sbjct: 870 DVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTT 926 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 VR+ + L ++A+ K + + + L ++ D +RQ+++NL+ NAVKFT G VH Sbjct: 927 VRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQ-GTVH 985 Query: 391 VTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 V V G +I+D GPGI ++ + SF Q + G GLGL I+ Sbjct: 986 VDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAIS 1045 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + ++ GG ++S EG LP + Sbjct: 1046 RHLVELQGGDIGVQSTPGEGSVFWFTLPLGDIHPA 1080 >gi|28869414|ref|NP_792033.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852655|gb|AAO55728.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331018585|gb|EGH98641.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 641 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 154/352 (43%), Gaps = 28/352 (7%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL-STQAIMSMHVLDISLAGMLAT 195 + + L AL + L L ++ + AL + Q + +S L Sbjct: 164 ILLKAGILALCALLFTFLLARRLSLSLSRPISEMGEALKAIQQGDYHTPMPVSDDAELGA 223 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + +L ++++ E + + + +TR+ AE N AKS FLA Sbjct: 224 LARHINSLAENLHRTSL--------------EQQRSVAQLIQTREEAERANRAKSDFLAM 269 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHELRTP+N +LG +++E M + EY S +HLL +IN+ILD SRIE Sbjct: 270 MSHELRTPMNGVLGMLQLMETTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIE 325 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGMRQVIL 373 ++ A +L ++V A ++ + + + P L +V D +RQ+++ Sbjct: 326 RDALQMEGIAFNLAELVSVSTHAFNHSALQRKLLLELHVQPGLEAMTVIGDPTRIRQILV 385 Query: 374 NLLSNAVKFTAIGGRVHVTVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSI 429 NL+ NA+KFT G+V V W + + D+G GI + ++ +F Q Sbjct: 386 NLIGNALKFTEE-GKVCVEADWLMLDDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADS 444 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLN 479 +I G GLGLPIA+ + GG S G LP +R ++ Sbjct: 445 SISRRYGGTGLGLPIARKLAERMGGTLYAESVEGAGSAFTLQIALPVSRYVS 496 >gi|37519624|ref|NP_923001.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210615|dbj|BAC87996.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 644 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 93/427 (21%), Positives = 178/427 (41%), Gaps = 33/427 (7%) Query: 69 NPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVW---RIWLLVGQIAIGLCWTLLT 125 +W + L L++ + + + + + L IG T Sbjct: 206 AVFVLVWIIAILGSVFNALTITQPLKELVQGVQRIAQGNFKQRVTLAYPGEIGELITSFN 265 Query: 126 LVEPGTWTPEYLTI-------YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L+ + E I K T + ++ + + ++ + + Sbjct: 266 LMAQRLQSYEEQNIEEITAEKAKLETFIATIADGGILLDSSLRILLVNPAMLRIFGWGSR 325 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA------- 231 ++ ++LD+ GM A ++ ++ + + ++ +A Sbjct: 326 VVGKNILDLLPVGMRAEVEEPLDSVSRNILEQAECRVVLDKRTLRVLISPVLAPRGDNLL 385 Query: 232 -------KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + LS E E N AKS+F++++SHELRTPL++I + E + E L++ Sbjct: 386 KGVVLTVQDLSKEA-----ELNQAKSQFISNVSHELRTPLSSIKSYIETVY-EFGDSLDD 439 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T E++ ++ L L+N++LDLSR+E+GR E + L+ + + + +L A+ Sbjct: 440 STKNEFLKTANQETDRLTRLVNDVLDLSRLESGR-EYHFEPVDLVQPIEQTLRTHRLTAR 498 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 ++ IE+ I L V + ++QV NL+ NA+KFT GGRV ++ T + Sbjct: 499 DREIELVSDIATDLPLVLGNYDLLQQVFSNLVGNALKFTEPGGRVTLSARRTDDPAKVRV 558 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GI+E + + F + +G GLGL I +I+ H Q I S++ Sbjct: 559 AVTDTGIGISEEDQRRIFERFFRVEN-RVHTLEGTGLGLSIVDNIVKKHNAQVHIESEVG 617 Query: 464 EGVEVIA 470 +G Sbjct: 618 QGSTFWF 624 >gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1033 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 ++ A+ LAKS+FLA+MSHE+RTP+NA+LG + ++ + P +E + Sbjct: 297 ERKRAKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESDLKP----EQREQLIK 352 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + +SG+ L+ +IN+ILD SRIEAGR + + + ++ E + +A+EK +E+F Sbjct: 353 VSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEEKGLELFLD 412 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDN 408 I+P V D + QV+ NL+ NA+KFT G +H+ V ++ ++D Sbjct: 413 IEPETPLQVIGDPLRLTQVLNNLVGNAIKFT-DHGEIHIGVRVAHYGDATLTLCINVRDT 471 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+A +I + SF Q + G GLGL IA+ ++ GGQ + S + +G V Sbjct: 472 GIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQGTNV 531 Query: 469 IAI 471 Sbjct: 532 SFS 534 >gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7] Length = 1350 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 10/246 (4%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + + AE N AKS FLA+MSHE+RTP+NA++G S ++ + N+ ++ + Sbjct: 623 AELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLT 678 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + +G+ LL +IN+ILD+++IEAG L + S ++ E + +AQEK + Sbjct: 679 KLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSV 738 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKD 407 + SL + D + Q+++NL+ NA+KFT +GG V VTV S++D Sbjct: 739 SVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGG-VDVTVSREDDHADTCWLRFSVQD 797 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + F Q + G GLGL + + + GG+ + S+L G E Sbjct: 798 TGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSE 857 Query: 468 VIAILP 473 LP Sbjct: 858 FWVELP 863 >gi|118476874|ref|YP_894025.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196046439|ref|ZP_03113664.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225863262|ref|YP_002748640.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|229183592|ref|ZP_04310815.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1] gi|118416099|gb|ABK84518.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196022623|gb|EDX61305.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225787926|gb|ACO28143.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|228599835|gb|EEK57432.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1] Length = 466 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTHQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri] Length = 621 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + E +++ + ++ Sbjct: 372 QKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAW--QDKEIAPKFLKVVQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356 +IN++L LSR++AG +L+ +++ ++ + + +++ I + Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NA+K++ GG + + T +SI D G GI + Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRKD 548 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605 >gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 484 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 123/456 (26%), Positives = 187/456 (41%), Gaps = 15/456 (3%) Query: 24 GLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLV---ANIGTWFTQNPIFPMWSLITL 80 P K + L V + + L VL + A + + + T Sbjct: 13 SRPGPRKGAGGESLPRLAVLGRVTGATLTGLGVLALGCGALVLLAEVTGLVQGAFLNATA 72 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 V +S + + + + P Sbjct: 73 LVATGLVSAALAAVAGGLARAATRASEEIPDDALLVTRHGLRGEVAMVEAMEGPFADA-- 130 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDIS-LAGMLATALSF 199 SA I L++ A + + + + + + A T + Sbjct: 131 -SAAAFIGLALFERVLVADRPAFLSAVQAAHHGRAQRCELRLRCDGQAETAPAFMTVEAR 189 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 T + L + + A + L A+ E AKS FLA+MSHE Sbjct: 190 CTALRSGLVRIVWRAPWQAAAAERLKADDAARARAEAEEAN------AAKSHFLAAMSHE 243 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLNAILGFSE++ ET PL++ +Y IH SGQHLL L+N+ILDLSR+EAG Y Sbjct: 244 LRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDILDLSRVEAGAY 303 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 EL + + +V C M+ + A + + P L ++ AD + +Q++LNLLSNA Sbjct: 304 ELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAFKQIVLNLLSNA 363 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT GGRV V+V + G I ++D GPG+ ++ + F Q + A +G G Sbjct: 364 VKFTPEGGRVQVSV-RSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAGDCTQRA-RGSG 421 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LG+ + + ++ HGG F + S G V LP Sbjct: 422 LGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLPLA 457 >gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] Length = 441 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 123/231 (53%), Gaps = 1/231 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + ++ F ++SH+LRTPLN IL ++++ N E +Y I ++ LL Sbjct: 179 EIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFNNLNCNEEKSFKYFKSIKQNSLRLLK 238 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN ++D+++I++G +E+ ++++IV + + + + K+I + + + Sbjct: 239 LINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLSVAQYVENKSITLTFDTNTEEKFMAC 298 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + +++LNL+SNA+KFT GG + + + + I ++D G GI E ++ + Sbjct: 299 DPDKVERIMLNLISNAIKFTNPGGHIFINM-FDEDDYIVICVEDTGIGIPEEDLDIIFER 357 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + A G G+GL + +S++ HGG+ +RS +G + + LP Sbjct: 358 FRQSNRASARNYTGSGIGLSLVKSLVEMHGGKISVRSTYGKGTKFVIKLPV 408 >gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1191 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 143/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + ++D +L ++ D ++Q++LNLL NAVKFT G VH+ V +G Sbjct: 905 QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLPQHTRQGLR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049 >gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 690 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 173/460 (37%), Gaps = 15/460 (3%) Query: 18 PTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF--PMW 75 + L P ++++ T L + + F + Sbjct: 103 AWQNQHNLWLPDLAAVEQDVTTFQQVGLSSALLLPIRLHEQPIALLVLFGREVQPLDAAL 162 Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 + A + K++ + + + Sbjct: 163 LHLIGMATAQVGAALKRLQQQAAIAERER----------LLHLMLDAAPDAMLIADGDEH 212 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA-GMLA 194 L +A + + + + +L + Sbjct: 213 VLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTYFSLIADQRQGPTLDATIEVHARRR 272 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 F + ++S +D + A + E E K+ FLA Sbjct: 273 DGSEFPSEFGLAAWRSLQGEYFTCVVRDVTERQQNQAALRTIEASTELERVAQLKNEFLA 332 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLN IL +E + G L N+ ++ + + SGQHLL ++N+ILD+ +I Sbjct: 333 NMSHELRTPLNTILSLTEAVSEGVYG-LLNDRQQQVLDVVTESGQHLLGIVNDILDMIKI 391 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG+ EL + + I + M++ A K I+I +ID + + AD + ++Q+++N Sbjct: 392 EAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIASQIDHQVDLIEADPRRLKQILVN 451 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 LLSNAVKFT GGRV + V + + Y+S++D G GIA ++P + F Q + Sbjct: 452 LLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIGIAHTDLPRLFRPFVQLDARLSR 511 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +G GLGL + + H G I+S G +LP Sbjct: 512 RHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCFTIMLP 551 >gi|220908653|ref|YP_002483964.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865264|gb|ACL45603.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 645 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 9/237 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E N AKS+F++++SHELRTPL I F E + E L+ +E++ +R L Sbjct: 392 ELNDAKSQFISNVSHELRTPLFNIKSFIETL-HEYGDDLSAAERREFLDTANRETDRLTR 450 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDLSR+E+G+ A+ L+ + + + QL A++K IE+ Q+ +P+L +VW Sbjct: 451 LVNDVLDLSRLESGK-RYHFEAMDLVQAIEQTLRTHQLNARDKGIELIQEAEPALPNVWG 509 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS------GRGQYISIKDNGPGIAEGEI 417 + + QV NL+ NA+KFT GGRV + + G+ + + D G GIA + Sbjct: 510 NYDLLLQVFGNLVGNALKFTPKGGRVAIRAYVLAQTPPLTGKQVRVEVSDTGIGIAPEDQ 569 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + +G GLGL I Q+IM H + S++ G LP Sbjct: 570 SAIFDRFFRVEN-RVHTLEGTGLGLSIVQNIMQKHHTTIHLVSEVGVGTTFWFDLPV 625 >gi|30261402|ref|NP_843779.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47526578|ref|YP_017927.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184232|ref|YP_027484.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49480021|ref|YP_035527.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165870335|ref|ZP_02214990.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167634324|ref|ZP_02392645.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167639386|ref|ZP_02397658.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170686693|ref|ZP_02877913.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170706391|ref|ZP_02896852.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177651547|ref|ZP_02934336.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190568704|ref|ZP_03021608.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|196035324|ref|ZP_03102729.1| sensor histidine kinase [Bacillus cereus W] gi|196040758|ref|ZP_03108057.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|218902507|ref|YP_002450341.1| sensor histidine kinase [Bacillus cereus AH820] gi|227815859|ref|YP_002815868.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228913969|ref|ZP_04077593.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926430|ref|ZP_04089502.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944998|ref|ZP_04107359.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120939|ref|ZP_04250181.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201] gi|229604389|ref|YP_002865818.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254682540|ref|ZP_05146401.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254726202|ref|ZP_05187984.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254733958|ref|ZP_05191672.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254740354|ref|ZP_05198045.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254753742|ref|ZP_05205777.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254758838|ref|ZP_05210865.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30255256|gb|AAP25265.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47501726|gb|AAT30402.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178159|gb|AAT53535.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49331577|gb|AAT62223.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164713830|gb|EDR19352.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167512825|gb|EDR88199.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167530212|gb|EDR92938.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170128925|gb|EDS97791.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170669216|gb|EDT19959.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172082825|gb|EDT67888.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190560120|gb|EDV14101.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|195992001|gb|EDX55964.1| sensor histidine kinase [Bacillus cereus W] gi|196028548|gb|EDX67156.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|218537752|gb|ACK90150.1| sensor histidine kinase [Bacillus cereus AH820] gi|227003278|gb|ACP13021.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228662599|gb|EEL18197.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201] gi|228814667|gb|EEM60927.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833254|gb|EEM78819.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845691|gb|EEM90718.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268797|gb|ACQ50434.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 466 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|65318667|ref|ZP_00391626.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 463 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 154 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 209 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 266 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 322 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 323 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 380 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 381 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWQI 440 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 441 ESEKGNGTTVSIKL 454 >gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 686 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 9/272 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + K ++ +K + + + E + + A+E + AKS FLA MSH++RTP+NA Sbjct: 262 VSKVVFANMNIHQQKINEMQQEEENRKALMTAYETAKEASEAKSSFLAQMSHDIRTPMNA 321 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G + + + E ++ + I+ S HLL LI+++LD+SRIE G+ +L ++ Sbjct: 322 IIGMTAIAMSHS---HEPERVEDCLEKINMSSSHLLALIDDVLDMSRIEKGKMQLMDAPF 378 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + +V E + +++ A+E+ + + D +RQV+LNL+SN+VK+T Sbjct: 379 CMDKLVDEVVTIIRPSAEERGHSLKVDTADLKHRRLIGDSGRLRQVLLNLMSNSVKYTPG 438 Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 G V +TV + ++D+G G+ E + F + ++ QG GL Sbjct: 439 NGTVKLTVKEVAQRVAGFGNFVFIVEDSGIGMTEEFRKYIFVPFLREEKVRETHIQGTGL 498 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G+PI Q I+ G + S+ G L Sbjct: 499 GMPITQGIINAMQGSIQVESEPGRGSRFTVTL 530 >gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] Length = 1138 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 9/267 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I E ++ +E E AKS FLASMSH++RTPLNA++G + + P Sbjct: 482 LEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLAL---CTP 538 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +++ E + I S Q LL LIN++LD+S+IE+G+ +L+E+ L + + + ++Q Sbjct: 539 NDSKKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVVTVIQS 598 Query: 342 RAQEKNIEIFQK-IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---- 396 + + + + + D + QV+ N+L NAVKFT GG +++ + Sbjct: 599 QTSVRGQHFDVNAWNITHELLCGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEISEIPSPD 658 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + I D G G++ + + F + A QG GLG+ I + I+ GG Sbjct: 659 PASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRIVDLMGGS 718 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIP 482 + S+ +G + IP Sbjct: 719 IRVESEPGKGTTFTVEISVRLSSRQIP 745 >gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15] gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15] Length = 2514 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 22/263 (8%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AEE AKS FLA++SHELRTPLN ++G SE++ L+N+ E I S L Sbjct: 1907 AEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS----LSNKEQLEMADSIRVSADLL 1962 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357 L +IN+ILD SR+EA + +L A + ++VRE + + Q + + N++I ++I+ Sbjct: 1963 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNQEKTRRNNVQIIKEINLP 2022 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 ++ D + QV+ NL+ N++KFT G + + S +KD G GI Sbjct: 2023 QLLIYGDPIRLHQVLGNLIGNSLKFTDR-GSITIGARVDSETEDSATLSFWVKDTGIGIP 2081 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470 ++ + F Q + G GLGL I +S++ G+ + S G Sbjct: 2082 PAQLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSADGVGTTAMFTV 2141 Query: 471 ILPNTRVLNFIPE-DNHESTQYK 492 R PE E+ Q K Sbjct: 2142 KFDKAR-----PEIKAGEAQQIK 2159 >gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] Length = 717 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 10/293 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + T + I L V Q E +LE A + + + +A+E + AKS Sbjct: 244 GWINTYVIRSLVIASVLIDFLVTAAIAQFEIRH-RKDLEYASQIEWQAK-KAQEASAAKS 301 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 RFL SMSH++RTP+NAI+G++E++E N E K+Y+ IH S + LL+LIN IL+ Sbjct: 302 RFLFSMSHDIRTPMNAIMGYTELMEKNIG---NAEKEKDYLSKIHSSSKFLLDLINSILE 358 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 ++RIE+G+ L+ A ++ D++ + + A EK +E ++ D + + Sbjct: 359 MARIESGKETLNIKACNIFDVLDSLNSVFEKLAHEKGLEYQCTTKIQHPYIYCDPIKLEE 418 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++LN++ N++K+T G V + + I+D G G++E +P F + Sbjct: 419 ILLNIIGNSIKYTDE-GMVLIQIEEGESGQFQCMIQDTGIGMSEAYLPHAFEDFSREKSG 477 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE----VIAILPNTRVLN 479 +++ +G GLGL I +S++ G I S++ +G + L Sbjct: 478 TQTSVKGTGLGLAIVKSLVELMNGTIEISSQVNQGTTTRMKFHFEIAKESELE 530 >gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] Length = 781 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ + + Sbjct: 398 ITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM--TMADNVAD 455 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 456 EKL--YSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRV- 512 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVRKE-YIDFY 570 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKIGGEITAESKLNE 626 Query: 465 GVEVIAILP 473 G +P Sbjct: 627 GSTFRFTIP 635 >gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1214 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ T + T + Y I R+G Sbjct: 834 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 889 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 890 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 949 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 950 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 1008 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GG + S+L G + LP Sbjct: 1009 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1068 Query: 476 RVLN 479 V + Sbjct: 1069 WVAS 1072 >gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 959 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 12/278 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E D+ ++ A++L D ++ AE AKS FLA+MSHE+RTPLN +LG ++++ Sbjct: 555 VEFRDITDSVKAAQALLD-AKEAAESATRAKSEFLANMSHEVRTPLNGVLGMLQLLQTT- 612 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + KEYI +S + L L+ +ILD+S+IEAG+ ++ E+ + + + Sbjct: 613 ---EQTDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQIIEAEFFTACLQESIMEI 669 Query: 339 LQLRAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + A+EK++ +D + DE +RQ++ NL+ NA+KFT G V V Sbjct: 670 FRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALKFT-ESGSVQVDAMVLP 728 Query: 398 GRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + ++ D G GI++ ++ + F QG + QG GLGL I + ++ Sbjct: 729 AKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQGAGLGLAIVRKLVRIL 788 Query: 453 GGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 GG+ +I + G V LP + + Q Sbjct: 789 GGEMVIDNTAGNGTTVYVSLPFKLPVPHQEPAAQQPRQ 826 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 158/359 (44%), Gaps = 10/359 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 +G W LL + + +L A+ + +++ L ++ + + Sbjct: 316 VMGTTWALLVELPEKEAFARIHQLEKLFFFAMLTAIVLVFITSHWLSNSITAPL--LRLT 373 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + + + + +S + ++ D ELE Sbjct: 374 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITL---IRDQNNELEQNLK 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + + + + K FLA+ SHELRTPL+ ++G +E + GP+ ++ + + Sbjct: 431 VISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQ-KSQRRQLEM 489 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SGQ L NL++++LD ++ G ++++ A++L VR + + K + I + Sbjct: 490 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 549 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 I L V ADE+ + Q++ NL+ NA+K+T+ G++ ++ + I + D G GI Sbjct: 550 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSE-GKIILSSTVLESQ-IRIQVVDTGQGIP 607 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + Q + + + QG GLGL I++ ++ GG + S+ G L Sbjct: 608 AEQLEHIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 666 >gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] Length = 949 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V T G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RTDGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1191 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 143/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + ++D +L ++ D ++Q++LNLL NAVKFT G VH+ V +G Sbjct: 905 QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLPQHTRQGLR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049 >gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 469 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 8/341 (2%) Query: 132 WTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAG 191 + + + + I ++ LS+ + V+V A + + +A Sbjct: 128 YFVAARPVLDATGVNIKAAVYVLSSTGHMDESITAVRSVLVLSGLGAFLLALGITWIIAK 187 Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 +L+ + T + ++ D++ + L+ E + + Sbjct: 188 ILSRPMLQMQAATRKIAAGELETRLTIQRDDEIGVLADSINHLAIE----LQRYRDTRQE 243 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F A++SHELRTP+ + G+++V++ E +Y+ IH L +L++++ DL Sbjct: 244 FFANISHELRTPITYLEGYAQVLKKRLY--ETEEEKDKYLDIIHEEAMRLQHLVDDLFDL 301 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 +++E G+ LS I L +I + ++L+A EKN+ + KI+ ++ ++ D QV Sbjct: 302 AKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIYGDGLRTEQV 361 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +LNLL NAV++T G + V + YI+++D G GI E EIP + F + + Sbjct: 362 LLNLLENAVRYTEK-GSIVVELDQNRS-FIYIAVEDTGMGIPEDEIPYIFDRFYRVEKSR 419 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGLPIA+ ++ GG+ + SKL G Sbjct: 420 SRQYGGTGLGLPIAKKLVELQGGELKVFSKLGHGTRFEIRF 460 >gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi] gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116] Length = 859 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 20/312 (6%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDET 238 + +A AT I +++ N+ + + +I + + A+ S+ Sbjct: 413 PHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIA 472 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ A++ FLA MSHE+RTP+N ILG +++++ + + K I + SG Sbjct: 473 RREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSV----DTQEQKNQIDVLCHSG 528 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL ++N+ILD S+IE G++ + + S D +R + + K +E+ + + Sbjct: 529 EHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDP 588 Query: 359 -SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGI 412 ++ D+ + Q++ NL+SNAVKFT I G + + + + D G GI Sbjct: 589 NVEIFTDQVRLNQILFNLVSNAVKFTPI-GSIRLHAELEQFYGAENSVLVVELTDTGIGI 647 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F Q G GLGL I ++++ G +RS G + L Sbjct: 648 ESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGGGTTFVITL 707 Query: 473 P---NTRVLNFI 481 P RVL + Sbjct: 708 PVKDRERVLRPL 719 >gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 1433 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 12/271 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L+ S+ + + I E + A+ R A + KS F+A+MSHE+RTPLN Sbjct: 665 LWSSHYEDRRVFSAFIRDITERKAAEEEIARARDEALSASRMKSAFVANMSHEIRTPLNG 724 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++G + + ++Y + S LL +IN+ILD S+IEAG+ E+ Sbjct: 725 VIGL----TELLLDTDLDCRQRDYAQTLQNSADALLAVINDILDFSKIEAGKLEIDPVDF 780 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +V + + +L AQ +EI P ++ D +RQV++NL+SNA++FT Sbjct: 781 DPRALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDAHRVRQVLVNLVSNAIRFTPK 840 Query: 386 GGRVHVTVGW------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V V V SG ++ D G GI + + +F Q + G G Sbjct: 841 -GEVVVWVDVAPAAPGESGHEVTFTVADTGIGIPDERQQHLFEAFTQVDASTTRQYGGTG 899 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 LGL I++ ++ GG+ + S+ EG Sbjct: 900 LGLTISKQLVELMGGEMGLASEPGEGSVFYF 930 >gi|229090353|ref|ZP_04221596.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42] gi|228692936|gb|EEL46654.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42] Length = 466 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] Length = 509 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 150/298 (50%), Gaps = 13/298 (4%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEV---AKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + L + + E + + E AK + ++ E++N K++FLA++SHE+ Sbjct: 86 AHQLTVTLIDYTEPYKELNTIAQERNESIIAKQMLVLKNQQLEQQNRFKNKFLANISHEI 145 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPL AI+GFSE+++ + N + I + + L IN++LD+++IE G + Sbjct: 146 RTPLTAIVGFSELLKKTNL----NFEQLGLLDVITNASEQLTATINDMLDIAKIELGELK 201 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNA 379 +S I+L +++ + + + +A+ K I + D + S D+ ++QV+ NLL NA Sbjct: 202 ISNEEINLKEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIGDKLRIQQVLGNLLENA 261 Query: 380 VKFTAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KFT +G V + + G ++D G GI E + +V SF Q + + ++ Sbjct: 262 IKFTNVGNVSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSVFESFHQVNASE--KQK 319 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCY 494 G GLGL I ++++ G+ + S+L +G + LP L P+ +S + + Sbjct: 320 GTGLGLAITKTLVEALEGKIQVESELGKGSQFRVYLPFKLNLRTSPKTIGKSIETSVF 377 >gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 1179 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 159/376 (42%), Gaps = 18/376 (4%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 L V ++ G ++ +T + + ++A ++AL+I L + + Sbjct: 378 VLAVPVMSRGAALAVMEFASFTPFTDDQRAVIEAALPMLALNIEILERNLRTRDLLEESQ 437 Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 L + A ++ K + L E+ L AE Sbjct: 438 AQAEELKASEEELRAQGEALQAANEEL------RVSEEELKVQQEALQSANEELRLNAEA 491 Query: 229 EVAK-SLSDETRKRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 A+ +E R A E+ + KS FLA+MSHELRTPLN++L + + G Sbjct: 492 LEARGLALEEARTEADRRAIEIEQASRYKSEFLANMSHELRTPLNSVLILARDLADNETG 551 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 L+++ E IH SG HLL LIN++LDLS++EAG+ L I+ D+ + Sbjct: 552 TLSDDQV-ESARIIHESGAHLLALINDVLDLSKVEAGKMSLDPVTIATADLAQVIRGRFG 610 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A +K +E + P L + AD + Q+ NL+SNA+KFT GG V V + Sbjct: 611 PVAADKGLEFTVESAPDLPRTMKADRGKIEQIANNLVSNAIKFTPEGG-VAVRLALDHDG 669 Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +S+ D G GI + V +F Q + G GLGL I++ + GG + Sbjct: 670 QALALSVADTGIGILPEDRQRVFAAFEQADSSTSRQFGGTGLGLTISRRLARLMGGDITL 729 Query: 459 RSKLREGVEVIAILPN 474 S G ++P Sbjct: 730 ESNGDRGSVFTLLMPL 745 >gi|260220402|emb|CBA27903.1| hypothetical protein Csp_A04610 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 597 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 20/343 (5%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA----EK 221 + + L + ++ + L+I+LA LS ++ + + S + + C Sbjct: 130 ALVGLQGFLEARVLLVTNTLEIALAKRQRDLLSRNLWLAFLVGFSLLACVVCFYVFYEGT 189 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I + S + AE + KS FL++MSHE+RTP+N +LG E+ G Sbjct: 190 VRDIEQQRKIDSELRHAKVNAERLSQVKSEFLSNMSHEIRTPMNGVLGMLELAR----GS 245 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + + Y+ S LL ++NEILD S++EA +L SA L ++ E ++ Sbjct: 246 SDAQEQQHYLATAQNSANALLKILNEILDYSKLEAHHMQLESSAWDLRALLEELKVVYTN 305 Query: 342 RAQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----T 396 R +K +E +D V D RQ++ NLL NAVKFT GG VH++V Sbjct: 306 RCVQKQLEFALHLDAQVPPCVVGDALRTRQILTNLLENAVKFT-EGGHVHLSVRVGKYSK 364 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 + +KD G G+ + ++ +F Q + G GLGL I + G Sbjct: 365 AKDTLVFEVKDTGIGVPLNQQASIFKAFEQADASTTRRFGGTGLGLSICAELARLMQGAL 424 Query: 457 LIRSKLREGVEVIAILPNTRVLNF------IPEDNHESTQYKC 493 +RS +G +P L PE + K Sbjct: 425 TVRSAPGQGSTFCLEVPLQPALEPGGANANSPEALADPAPQKS 467 >gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144] gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144] Length = 586 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F+A++SHELRTP++ + G++E I + + ++ + + + L L Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 412 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +NE+L+++R++A + + + ++ + +++++E + + + D Sbjct: 413 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYD 472 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QV+ NL+ NA ++T G + +++ ++I D G GIA + V F Sbjct: 473 MDRMDQVLTNLIDNATRYTQAGDSIKISIE-EDSDFNILTITDTGTGIAPEHLKQVFDRF 531 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + A K +QG GLGL I + I+ HGG+ + S+L +G I LP ++ ++ Sbjct: 532 YKVDAARKRGKQGTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLPKSKQIS 586 >gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1204 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 14/236 (5%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N ++G S ++ +GP +EY I S + LL +IN+ILD+ Sbjct: 824 FLANMSHEIRTPMNGVIGMSNLLVDTPLGP----EQQEYAQAIRHSAEALLAIINDILDV 879 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S++EAG+ +L + L +V + + +L+ A K + + ++ P L ++ D +RQ Sbjct: 880 SKLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQ 939 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG--------QYISIKDNGPGIAEGEIPTVLT 422 V+LNL+ NAVKFT GG V V V G I + D G G+ + Sbjct: 940 VLLNLIGNAVKFTEHGG-VFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQ 998 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 F Q ++ G GLGL I++ ++ GGQ +RS G ++ R Sbjct: 999 PFTQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVIAFERAA 1054 >gi|126660737|ref|ZP_01731835.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126617978|gb|EAZ88749.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 391 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 151/298 (50%), Gaps = 9/298 (3%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 ++ + + S I + + L + + K+ ++ S + + L+ Sbjct: 92 IAQEFMKSGAWDYIVESMISPDVLLKTLKNSMRIHKAEKELNSINQQLRENNEVLKQKNE 151 Query: 234 LSDETRKR-------AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + +K+ +E + +S+FLA++SHELRTP+NAI+GFS+++ + PL++ Sbjct: 152 ELKQQQKQIHLKNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLSS-Q 210 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + + I + Q+LL LINE+LD S++ + +L+ L +V+ I L K Sbjct: 211 QTDIVQRIFNNSQNLLTLINEVLDYSKLNTDQMDLTVEEFDLSMLVQFTIKELSCLTINK 270 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 ++ + ++ S ++ D+ +R++++NLLSNA+KFT G + V V + + I ++ Sbjct: 271 DLTLNVDVNLSNPLIFNDKNFLRRILINLLSNAIKFTPT-GHIEVKVWEMNSQKIAIRVE 329 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 D G GIA+ + ++ + F Q + G GLGL I S++ G+ + S+L + Sbjct: 330 DTGIGIAQEHLKSIFSPFQQVDQTLTRQHSGTGLGLAIVHSLIKMMEGEIHVTSELGK 387 >gi|30019452|ref|NP_831083.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|218234975|ref|YP_002366083.1| sensor histidine kinase [Bacillus cereus B4264] gi|228957670|ref|ZP_04119417.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043139|ref|ZP_04190864.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676] gi|229108855|ref|ZP_04238460.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15] gi|229126715|ref|ZP_04255727.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4] gi|229144004|ref|ZP_04272420.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24] gi|229149600|ref|ZP_04277832.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550] gi|296501981|ref|YP_003663681.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|29894996|gb|AAP08284.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gi|218162932|gb|ACK62924.1| sensor histidine kinase [Bacillus cereus B4264] gi|228633946|gb|EEK90543.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550] gi|228639401|gb|EEK95815.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24] gi|228656655|gb|EEL12481.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4] gi|228674624|gb|EEL29863.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15] gi|228726198|gb|EEL77430.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676] gi|228802012|gb|EEM48882.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323033|gb|ADH05961.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 466 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] Length = 617 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 109/243 (44%), Gaps = 8/243 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + + +F++++SHELRTPL ++ + E + + + +++ ++ Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPKFLKVTQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357 +IN++L LSR+++G ++ +++ ++ + + ++++ I + Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKEDHPEKTYTIKRYFTKR 489 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D QV+ NL++NA+K++ GG + + T +S+ D G GI +I Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 P + F + A + G GLGL I++ + GQ S +G LP V Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKETVEALHGQIWAESVEGKGSTFYIALPYEPV 608 Query: 478 LNF 480 Sbjct: 609 EEE 611 >gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 953 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 455 KMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGL----PQGVDR 510 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ +K + Sbjct: 511 LVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKRLG 570 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+ ++ S D ++QVI N+L+NA+KFT G + + V T G ++D Sbjct: 571 LYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDT-GCIVLNV-RTCGNYLEFQVRDT 628 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E EI + F Q ++ QG GLGL I + ++ G + S+ G Sbjct: 629 GVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGSSF 688 Query: 469 IAILPN 474 +P Sbjct: 689 TVRIPL 694 >gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli H736] Length = 708 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 210 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 265 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 266 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 325 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 326 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 383 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 384 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 443 Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494 +P + E + +C+ Sbjct: 444 TVRIPLYGAQYPQKKGVEELSGKRCW 469 >gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1811 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 5/241 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K FLA +SHELR+PLN ILG++++++ L+ + ++ + I R+ + LI Sbjct: 1438 NRIKDEFLAVLSHELRSPLNPILGWTQMLQT---YKLDEKATQQALATIERNAKLQTQLI 1494 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++LD+SRI G+ L+ + ++L+ +++ + ++L A+ KNI+I + + V D Sbjct: 1495 EDLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGEVLGDS 1554 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++QV+ NLLSNAVKFT GG++ + + Q IS+KD G GI +P V F Sbjct: 1555 ARLQQVVWNLLSNAVKFTPAGGQIEIDLELKDINAQ-ISVKDTGKGINPNFLPHVFEYFR 1613 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPED 484 Q G+GLGL I + + HGG + S G LP T + E+ Sbjct: 1614 QEDSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLPLTATPSPTFEE 1673 Query: 485 N 485 + Sbjct: 1674 S 1674 >gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris RCH1] Length = 1535 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E KRAEE N KS FLA++SHELRTPLN LG + + ++Y+ R Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1195 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SGQ+L+ L+++ILDLSRIEAG+ + + ++V E L A K I + I P Sbjct: 1196 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAP 1255 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412 + V D +RQ + NL+ NAVKFT GG RV + G + +++D GPGI Sbjct: 1256 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1315 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E I ++ F Q + G+GLGL I +M GG + S G + + Sbjct: 1316 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAI 1375 Query: 473 PNTR 476 P + Sbjct: 1376 PVGK 1379 >gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 1513 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 E KRAEE N KS FLA++SHELRTPLN LG + + ++Y+ R Sbjct: 1118 EASKRAEEANRTKSEFLANVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIR 1173 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SGQ+L+ L+++ILDLSRIEAG+ + + ++V E L A K I + I P Sbjct: 1174 SGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAP 1233 Query: 357 SLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPGI 412 + V D +RQ + NL+ NAVKFT GG RV + G + +++D GPGI Sbjct: 1234 GTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGI 1293 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E I ++ F Q + G+GLGL I +M GG + S G + + Sbjct: 1294 PEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAI 1353 Query: 473 PNTR 476 P + Sbjct: 1354 PVGK 1357 >gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] Length = 615 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 8/236 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + RF++++SHELRTPL ++ + E + N ++ ++ +I Sbjct: 375 DQDRKRFVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAP--NFLKVTQEETDRMMRMI 432 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-----EKNIEIFQKIDPSLSS 360 N++L+LSR++ G L + ++L ++ + + + EKN I + Sbjct: 433 NDLLNLSRMDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIW 492 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D ++QV+ N+++NA+K++ GG + + T +SI D G GI + I V Sbjct: 493 VEVDTDKIQQVLDNIMNNAIKYSPDGGVITCRLVETHNH-VIMSITDQGLGIPKEAISHV 551 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + A A+ G GLGL I++ ++ HGG+ + S+ EG LP Sbjct: 552 FDRFYRVDKARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLPYEP 607 >gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14] gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14] Length = 576 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 8/304 (2%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 +L ++ ++ + I+ G + L + I Sbjct: 139 SLWDKSGHTLWINIINNRGKIGVLAVRIICTDDRLPAIQKHMALFGELFRSAIGRQITFN 198 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D +KRAE+ + FLA ++HELRTPLN +LG +E+++ + ++ + Sbjct: 199 QAID-AKKRAEDSEQSTRDFLAMINHELRTPLNGLLGAAELLQDTPLDN----DQQKLLT 253 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 ++ SG+ L +IN++LD S+I AG EL E + + + R+ EK ++ Sbjct: 254 TLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNI 313 Query: 353 KIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 L + DE ++Q+ +NL+SNA+KFT G VH + W + Q ++KD+G G Sbjct: 314 YYSNDLPKIFIGDEDRIKQIFVNLISNAIKFTPA-GFVHAKLWWQNKHLQ-FTVKDSGCG 371 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + F Q K + +G GLGL I + + GG + S L G Sbjct: 372 IDHSDQHKLFKPFSQVDNTSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVS 431 Query: 472 LPNT 475 LP Sbjct: 432 LPLA 435 >gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 757 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 119/253 (47%), Gaps = 5/253 (1%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + E R A+ N AKSRFLA SHE+RTPLN I+G S ++ + P Sbjct: 208 RDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTHLTP- 266 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 Y + SG L +LI E+LD S+IEAG+ +L +L ++ + +L R Sbjct: 267 ---EQATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPR 323 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 AQ +++EI +D L V D +RQV+LNL NA+KFTA GG + Sbjct: 324 AQARHLEIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPGAMPGEI 383 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++D G GIA + F Q I G GLGL I+ I+ GGQ + S Sbjct: 384 RFMVRDTGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQITLHSA 443 Query: 462 LREGVEVIAILPN 474 G ++P Sbjct: 444 QGTGSTFEFVVPL 456 >gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1210 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 10/225 (4%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N +LG +E++ + + + +HRSG+ LL +IN+ILD Sbjct: 660 FLANMSHEIRTPMNGVLGTTELLLNSAL----TDKQRHLASTVHRSGRTLLAIINDILDF 715 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAG+ +L L+ ++ E + + A+ K + + Q I ++ + D RQ Sbjct: 716 SKIEAGKLDLECVDFDLLPVLEESLELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQ 775 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQ 426 +++NLLSNA+KFT GG V ++ + G ++ D G GI + +F Q Sbjct: 776 ILMNLLSNAMKFTETGG-VSLSAEYVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQ 834 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL IA+ ++ GG + S G Sbjct: 835 ADGSTTRRYGGTGLGLSIAKQLVGLMGGTITVESTPGSGSTFAFT 879 >gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis 101-4-CHN] gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis 101-4-CHN] Length = 620 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E+ + +F++++SHELRTPL ++ + E + + E +++ + ++ Sbjct: 372 QKEDQERKQFVSNVSHELRTPLTSVKSYVEALSDGAW--KDAEIAPQFLKVVQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA------QEKNIEIFQKIDP 356 +IN++L LSR+++G +L+ +++ ++ + + Q+K I +KI Sbjct: 430 RMINDLLSLSRMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKITQ 489 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NAVK++ GG + + T +SI D G GI + Sbjct: 490 KDLWVEIDTDTFTQVIDNIMNNAVKYSPDGGVITARLMETKNH-VIMSIADQGLGIPRKD 548 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 I + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 549 IGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYISLP 605 >gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 775 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 154/282 (54%), Gaps = 9/282 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 355 FWASVVITAQYDSNDQLRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++E++ + + + +G I R+GQHLL LINE+LD++RIEAG Sbjct: 415 ELRTPLNSILGFAQLLEMD-----SPASQRPQVGHILRAGQHLLKLINEVLDIARIEAGH 469 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEI-FQKIDPSLSSVWADEKGMRQVILNLLS 377 LS + L ++++E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 470 ISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQLPDELGVVADRQRLIQVLLNLLS 529 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + V ++ R +S+ D+G GIA I + F + + +G Sbjct: 530 NAIKYNRPNGQVRIEVEQSAER-VAVSVVDSGHGIAPELIDQLFKPFERLNADPS--VEG 586 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL +++S++ G + S EG LP +V Sbjct: 587 TGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELPVVQVQQ 628 >gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 531 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263 ++ + + +L+A + ++ +S+E R +AE N AK+RFLA++SHELRTP Sbjct: 201 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 260 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS+V+ E G L N+ +EY+ IH+SG HLL+++N +LD+S+IEAGRYEL Sbjct: 261 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 320 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + + C ML +A+EK + + ++ S+ + AD++ +Q+++NL+ NA+KFT Sbjct: 321 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 380 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V G +++ D G GIA ++ + F Q +G GLGL Sbjct: 381 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 439 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + HGG IRS EG ++ +P Sbjct: 440 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469 >gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 428 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 5/296 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLI---AELEVAKSLSDETRKRAEEENLA 248 +L+ L + K+ + + + LI ELE + + E + Sbjct: 113 VLSITLRNAIRLHQSETKTQLAYKQLKESHEKLIRNNEELERQRQQIQLQNLKLLEVSRL 172 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FL+++SHELRTP+NAI+GF++++ L++ + + I + ++L L+NE+ Sbjct: 173 KSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS-VQTDILKRILNNAKNLSMLLNEV 231 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD S+I++GR L L +V + ++ + K + + +I+ + V+ D + Sbjct: 232 LDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSLSVEIELENTLVFNDPMRV 291 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+++NLLSNA+KFT G + V V S ISI+D G GI+ + + +F Q Sbjct: 292 SQILINLLSNAIKFTER-GCIWVRVTEPSKNRIAISIRDTGIGISSQDCEHIFEAFRQVD 350 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 I G+GLGL I S++ GG+ ++ S+L G LP +NF E+ Sbjct: 351 QGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVGSLFGVELPRQVSVNFASEE 406 >gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 569 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + + E++ I + + +L+ ++ Sbjct: 343 RREFVANVSHELKTPITSIKGFAETLIDGA--KNDENSLDEFLNIILKESNRIESLVEDL 400 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS IE + E+ + L ++ + + L AQ K IEI +I + + A+ + Sbjct: 401 LDLSHIEQ-QTEIRTERVDLSEVTQTTVNTLYAYAQRKAIEIDAEIQ-NHVMIDAEASKI 458 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV+ NL+SNA+ +++ V+V V + + + ++D+G GIA E V F + Sbjct: 459 AQVVTNLVSNAINYSSDESTVYVRV-YQKDDKRILEVEDHGIGIAPEEQKHVFERFYRVD 517 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + I+ + G+ I S+ G I Sbjct: 518 KARSRDSGGTGLGLSITKHIVEAYQGRIQIESEPDVGTTFRIIF 561 >gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3] gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3] Length = 1224 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G S + + + YI + S LL LI Sbjct: 477 NQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTK----AQRNYIHKVKLSSDTLLGLI 532 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N+ILD S+IEAG+ ++ L +++ ++ LRA E+ +E+ ++D + + + D Sbjct: 533 NDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNLIGD 592 Query: 365 EKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVL 421 + Q+++NL +NAVKFT G ++ + V G S+ D+G G+ + + + Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISILVAERHGDDIKLKFSVSDSGIGMTQEQADKLF 652 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q + G GLGL I++ + GG + ++L +G + Sbjct: 653 NKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVSTELGKGSTFSFTI 703 >gi|95930793|ref|ZP_01313525.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133141|gb|EAT14808.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 591 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 9/293 (3%) Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 + D + G + + L V+++ + + +L ++ A Sbjct: 151 RIADEQMTGTTKIVIETVLSMYERLASHTVQLIKEISRRKQAEKKLLDTHQALCLAKEGA 210 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E N KS F+A++SHE+RTPLNA++G +++ + + E + I + QHLL Sbjct: 211 EVANQTKSVFIANISHEIRTPLNAVIGMVHLLKRDGL----TEKQAFRVDKIEDASQHLL 266 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++IN+ LDLS++EAG+ L ++L +V+E I ML + + K +++ + + + Sbjct: 267 SVINDTLDLSKVEAGKLVLESVPLNLPSLVQETISMLDGQIEAKGLDLKVECENLRGRLH 326 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIP 418 D ++Q++LN L+NA+KFT G + T I + D G GIA ++P Sbjct: 327 GDPTRLKQMLLNYLTNAIKFTEQ-GAITFRASVTEESPSVSLLRIEVTDTGIGIATEQLP 385 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + ++F Q + G GLGL + + + G+ ++S + G Sbjct: 386 LLFSNFAQAETSTTRKYGGTGLGLALTRRLAELMEGEAGVQSTVGLGSTFWFT 438 >gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1177 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 174/392 (44%), Gaps = 14/392 (3%) Query: 109 WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF 168 ++ + G + ++ L + ++ + A+ ++A++I + + + Sbjct: 334 LMVAPAMENGEVFAVIELGFLRGVSEAERSLLERASEMLAVAIRSGLDRSRLETLLEETR 393 Query: 169 PVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 L Q + + + +L + + + L ++N + + + Sbjct: 394 RQSEELQAQQEELRVSNEELEQQSRILQESQTQMEHQQSELEQTNAHLEEQTQQLEYQRE 453 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +L A+ + E + KS FLA+MSHELRTPLN+ L ++++ G L + Sbjct: 454 QLLRAQGALTDKAHELELASQYKSEFLANMSHELRTPLNSTLILAKLLADNKPGNLQADQ 513 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K Y IH +G LL LIN+ILDLS+IEAG+ + +++ ++ + L+ A+EK Sbjct: 514 VK-YAQTIHAAGSDLLALINDILDLSKIEAGQVSVLVEPMTIATALQALMEPLRPIAREK 572 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 +E+ +DP + + + D + QV+ NLLSNA+KFTA G V + V G ++ Sbjct: 573 GLELTWTVDPGVPASMQTDPMRLAQVLKNLLSNALKFTAK-GSVGLQVSRVPGGMLAFAV 631 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIAE + + +F Q + G GLGL I++ + GG + S +G Sbjct: 632 RDTGIGIAEQQQQFIFDAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGTLTVSSTPGQG 691 Query: 466 VEVIAILPN---------TRVLNFIPEDNHES 488 +P +P ES Sbjct: 692 SVFTLTVPVILELVEPGQALAAAPLPRPARES 723 >gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 659 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 12/243 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + + +AEE + KS FLA+M+HE+RTPLNAI+GFS+V+ E + ET +E+ Sbjct: 424 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDE----EDRETRQEFADI 479 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + + L LI ++LDLS+IE+ L + +++E M+ LR E +E+ Sbjct: 480 IQNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELY 538 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 L + D + Q++ NLL+NA+K T G + ++ ++ ++D+G GI Sbjct: 539 DCEELV-METDRNRLTQILTNLLTNAIKHTQE-GSIRFGYKRSALSVEFF-VQDSGEGIP 595 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E +I T+ + F Q +GVGLGL I Q ++ GG + S++ EG LP Sbjct: 596 EDKIDTIFSRFVQLDNW----SKGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 651 Query: 474 NTR 476 R Sbjct: 652 LIR 654 >gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613] Length = 615 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 142/264 (53%), Gaps = 6/264 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ N+E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ E + + A+ K I I + + D + ++ILNLLSNA+KFT GG + Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNAIKFTNPGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V SG Y+ +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNVK-DSGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILP 473 H G I+S+L +G E I LP Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLP 584 >gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 651 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 10/263 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + ++ E+R+RAE N AK+ FLA+MSHE+RTPLN ILG + +E + Sbjct: 238 VTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALEDTA----PS 293 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +IG R+ + L L+N+ILDLSRIEAG+ ++ L ++V + A+ Sbjct: 294 AEQQRFIGAAIRASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASIEELFSYSAR 353 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 +K + + + + + D +RQ++ NL+ NA+KFT G + + + Sbjct: 354 KKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEPIRVEEQRIR 413 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++ D G GI E + + F Q QGVGLGL I + + G+ + S Sbjct: 414 LLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRLMNGEVTLES 473 Query: 461 KLREGVEVIAILPNTRVLNFIPE 483 + G V LP L PE Sbjct: 474 REGHGTTVSLSLPLE--LPQQPE 494 >gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 620 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 8/343 (2%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 + ++ + L A+ ++A+S L + ++ + + + + + Sbjct: 273 LDRQKMWIAVVSLFAVVLAAVSA--LLFYKRITQPIDRITQVFEKLAADEPVKDIPESHR 330 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 + N + E +I++ + + ++ AE+ KS FL Sbjct: 331 KDEIGMLASAADVFRAKNAQTNQLLLESKKMISDQKALNAELAIAKRHAEKALSIKSEFL 390 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A+MSHELRTPLN+++G++ + + + + I R+G+HLL +IN+ILDLS+ Sbjct: 391 ANMSHELRTPLNSVIGYTVRLLKHV--NSDRAIQLKALEAIERNGRHLLAMINDILDLSK 448 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEA + +LS + L ++ + + + A+EKN+E+ + ++V D + Q++L Sbjct: 449 IEAQKLDLSIRPVDLNELCEQAVTQVGPAAEEKNLELVFIRSQT-ATVHTDFTRLSQILL 507 Query: 374 NLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLLSNA+K+T GG + + + S + + + D G GI + F Q + + Sbjct: 508 NLLSNAIKYTNEGG-IKIELERDISEKYVSLRVIDTGIGIEPENQKRLFLRFEQFDDSSR 566 Query: 433 SAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I S+ G + + S + +G +P Sbjct: 567 FQVGKGSGLGLAIVASLSKLLGVRVSVASDVGKGSTFSLRVPV 609 >gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] Length = 904 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 131/266 (49%), Gaps = 11/266 (4%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + E + A N+AK+ FL MSH++RTP+NAI+GF+++ ++ Sbjct: 509 RKKQMEALKEAQD-ANAANIAKTTFLNHMSHDIRTPMNAIVGFTDIAMKRK----PDKEV 563 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 ++ + I +S ++L+ LIN++LD+SRIE+G+ E + L D+ + + + + ++ Sbjct: 564 EDCLKKIRQSSEYLMTLINDVLDISRIESGKLEYKPVLVDLRDMTDTVLSIARGYMENRD 623 Query: 348 IEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYI 403 + + V ADE +R+V+LN++SNAVKFT GG + + Sbjct: 624 LNFSVSREELKNPYVMADELRIREVLLNIISNAVKFTKDGGTISFVAENCPGKDEHHLIV 683 Query: 404 S--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I D G G++E + F Q + +++ +G GLG+ IA+ + GG+ + S+ Sbjct: 684 RYHISDTGIGMSEEFQTRIFDEFSQENNGARTSYKGTGLGMAIAKQYVDLMGGKIEVSSR 743 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487 G +P + + E+ + Sbjct: 744 QGVGSAFTVEIPLLIAEHVLTEEKEK 769 >gi|158312523|ref|YP_001505031.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158107928|gb|ABW10125.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1400 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 155/343 (45%), Gaps = 17/343 (4%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L + +++ + F + + + + IM+ + LA + Sbjct: 781 VLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQRLTQ-ELRSQS 839 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L ++N ++ A ++ E+E+A+ +E ++ + KS FLA+MSHELRTPL Sbjct: 840 VELQRTNNELEEKAALLEEKNQEIELARIGLEEKAEQLALSSQYKSEFLANMSHELRTPL 899 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N++L ++++ L+ + ++ IH +G LL LIN+ILDLS++EAG+ + Sbjct: 900 NSLLILAKLLADNPDHNLS-QKQIDFAETIHSAGSELLGLINDILDLSKVEAGKMNVDAG 958 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFT 383 + + + A+EK + + + DE+ ++QV+ NLLSNAVKFT Sbjct: 959 PVRTAALCDAVAGVFGPTAEEKGLTFEISVTEDVPDEFVTDEQRIQQVLKNLLSNAVKFT 1018 Query: 384 AIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 G V + V S + ++ D G G+A ++ + +F Q Sbjct: 1019 DA-GTVRLDVAVASPDTPFVAPSLRSAPMVLSFAVTDTGIGVAAEKLRMIFEAFQQADGT 1077 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I++ I GG + S++ +G +P Sbjct: 1078 TSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVP 1120 >gi|110800980|ref|YP_696200.1| sensor histidine kinase/response regulator [Clostridium perfringens ATCC 13124] gi|110675627|gb|ABG84614.1| sensor histidine kinase/response regulator [Clostridium perfringens ATCC 13124] Length = 1093 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 4/317 (1%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY---ITYHLFKSNVKILSCQAE 220 + + ++ + I + + ++Y + + K ++ E Sbjct: 773 LTPVTALDLKIAPPPWRTPTAYLIYFSSAVIVIFLMWSYVTALEKTVKKRAEQLKKEAKE 832 Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI-ELETM 279 K+ L E E + + + + K+ + ++SHELRTPLN IL ++I Sbjct: 833 KEKLYIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKE 892 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L ++Y + + HLL +IN+I+D S+IE+G Y+L+ ++ +V + + L Sbjct: 893 DCLGKYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSL 952 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + +E N++I + V D+ + + ++NLLSNA+K+T G + V + Sbjct: 953 KAYIEENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGYGTIEVFIRECENE 1012 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I+IKD G GI++ + + F Q K + G+GL + +SI+ H G + Sbjct: 1013 TVEIAIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVE 1072 Query: 460 SKLREGVEVIAILPNTR 476 S+L +G I LP + Sbjct: 1073 SELNKGSTFIITLPIRQ 1089 >gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 511 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 7/244 (2%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ +A + AKS FLA MSHE+RTP+N+ILG ++ + + +E Sbjct: 13 KNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED----REK 68 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H SG LL +IN+ILD SR+EA + ++ L + V + +L+ RA EKN+ + Sbjct: 69 LSVVHDSGAALLGIINDILDFSRLEADGVQFEDAPFHLGNTVEGVVSLLRGRATEKNLTL 128 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY-ISIKDN 408 L V D +RQV++NL+ NA+KFT GG V + + +Y S+ D Sbjct: 129 ALDAPSPLPGWVSGDGARLRQVLINLVGNAIKFTTQGG-VVLRLRRDGEGNRYEFSVIDT 187 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + + F Q +I G GLGL I + ++ GG+ + S G Sbjct: 188 GIGLEAEQAKNLFQPFHQADASISRRFGGSGLGLAICKKLVDAQGGKIGVDSTKGLGSRF 247 Query: 469 IAIL 472 L Sbjct: 248 WFHL 251 >gi|225568038|ref|ZP_03777063.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] gi|225163134|gb|EEG75753.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] Length = 1004 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 8/238 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + +A+ + AK+ FL+ MSHE+RTP+NAI G + I + + + + + I + Sbjct: 617 KSKADAVSRAKTDFLSRMSHEIRTPMNAISGMT-TIAKSVLD--DRKKTMDCLNKIESAN 673 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 +LL+LIN+ILD+SRIE+G+ EL+ + L+ ++++ + + +A+EK++E+ + Sbjct: 674 AYLLSLINDILDMSRIESGKMELNYEPVDLVQLMQKLEYLFKAQAEEKHLELIFVNEYSG 733 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAE 414 + AD + QV++N++ NA+KFT GR+ V V S+ D G GI Sbjct: 734 GRRLNADSLRLNQVLVNIIGNALKFTGQ-GRITVRVEELEASPMAVLRFSVADTGIGIEP 792 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + V +F Q A + G GLGL I+ ++ GG SK+ EG E L Sbjct: 793 EALSRVFNAFEQADPATAARNGGTGLGLAISSRLVQMMGGTLEADSKVGEGSEFFFTL 850 >gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] Length = 1236 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + + + + +K ++ AEE N AKS FL+SMSH++RTP+NAI+G + + Sbjct: 826 RQDVTETMTAERRSKETLEQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAH 885 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 E + + I S +HLL+LIN+ILD+S+IE + L+ + L D++ + Sbjct: 886 L---DEREKVENCLRKITLSSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYS 942 Query: 338 MLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW- 395 ++ +AQE ++ + + + D + Q+++N+L NAVKFT GG V Sbjct: 943 IIGQQAQEAGLQFDVRTSNIIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEEL 1002 Query: 396 ---TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 +I+D G G+ E + + F + +G GLGL I + ++ Sbjct: 1003 PTIKGPGYVRYCFTIRDTGIGMPESFLSHLFEPFTR--NRNTEHVEGSGLGLSITKGLIE 1060 Query: 451 NHGGQFLIRSKLREGVEVIA 470 GG+ L+ S+ R G Sbjct: 1061 LMGGELLVESRERAGTTFRV 1080 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 12/342 (3%) Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 +++L L + L F + + VL + + A ++ + Sbjct: 1238 VASLRQEALAEDLHLKFGSLPGGPWPEPATRALVLPVPMGADTAGMGVLVAGLSPLVALD 1297 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAI 267 + Q L A + A++ ++ ++RAEE + AK+ F +++SHE RTPL I Sbjct: 1298 DEYRGFLQLLARQLAASISSARAY-EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLI 1356 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 LG E + L E + + R+ L ++N +LD SR+EAGR + + Sbjct: 1357 LGPVEDALSKPAKALTGEK----LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVD 1412 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + R Q + + + P ++ D + +V+LNLLSNAVK+T G Sbjct: 1413 LSAVTRNLASAFQSAVESAGLRLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYE-G 1471 Query: 388 RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + V + W ++++D G GI E E+P V F + + +G G+GL + Q Sbjct: 1472 EIRVVLRWQ-DDHAVLTVQDTGVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQE 1530 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 +M HGG + S L EG LP R +P + E T Sbjct: 1531 LMKLHGGSISVESTLGEGTAFTLRLP--RGSAHLPPERIERT 1570 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 31/425 (7%) Query: 86 NLSLGKKVMNSDIKIGEVYVWRI-----WLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 + +++ R + + L+ + E + Sbjct: 143 RVLGERRLRTLRDLAARAGPVRREQDAWREAAQVLEGNVLDVPFALLYRMSDAGERPELV 202 Query: 141 KSATLLI--ALSISALSN-----FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 ++A A ++S + + P V + A Sbjct: 203 ETAGWGTDTAAAVSLMGAPQANLLWPFADAAATLTPQFVPDVRARFAELPRGTWPEAPHS 262 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDD-----------LIAELEVAKSLSDETRKRA 242 A L + L V LS + DD IA + +E +KRA Sbjct: 263 AWVLPISRSGSKRLHGFLVAGLSARRAPDDDYRGFLGLVADHIATAISSACAYEEEKKRA 322 Query: 243 EEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E + K+ F ++SHELRTPL +LG E +T PL +E +HR+G Sbjct: 323 EALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPL-PPKQRERQEVVHRNGL 381 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N +LD +R+EAGR + S L + E + + Sbjct: 382 RLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPE 441 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 +V+ D +V+LNLLSNA+KFT G V + + W G ++++D G G+ E E+P Sbjct: 442 AVYVDPAMWEKVVLNLLSNALKFTLQ-GEVRIALRWL-GDRVELTVQDTGTGMPEAELPR 499 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A + +G G+GL + Q ++ HGG ++S L +G LP Sbjct: 500 IFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPAG--AA 557 Query: 480 FIPED 484 +P++ Sbjct: 558 HLPQE 562 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 13/276 (4%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 +T L S ++ + +AE+ A +E +E+R+ + LA +SH Sbjct: 712 LLARVTALLTVSQLRQAAVRAER----AHVEDTLRFLEESRR----ATRLREDMLAVVSH 763 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 +LR+PL AI +E++ + I RS + LI+++LDL+ I+AG Sbjct: 764 DLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASIDAGT 823 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 + + ++VR+ + + A EK +++ +++P L + D++ + Q + NLLSN Sbjct: 824 LSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI-LSCDKERILQALGNLLSN 882 Query: 379 AVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A+KFT GG + + G +S+ D GPGI P + + +++ +G Sbjct: 883 AIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYW---HGVQNKREG 939 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GLGL IA+ I+ +HGG+ + EG LP Sbjct: 940 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 9/266 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L + +A + ++ +K E + FL +SHELRTP++A+ + Sbjct: 1726 RELLVRVRTHLDMARVRREVVRNEIEKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQ 1785 Query: 273 VIELETMGPLNNETYKEYI----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 + +E E + + L L+ ++LD S G +L+ + L Sbjct: 1786 SLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDL 1845 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + Q +A + PS + D + Q++ LL NA+KF G Sbjct: 1846 SGVASAVVEQAQSKAAHAGCVLTLN-APSPVMGYCDRARLHQLLEGLLDNALKF-GAGKP 1903 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + V V W +++ D+G GI + + F + + G GLGL I++ I Sbjct: 1904 IEVAV-WRDSDHALLTVMDHGAGIEPEDEERIFGRFERAVS--EKNYGGFGLGLWISRHI 1960 Query: 449 MANHGGQFLIRSKLREGVEVIAILPN 474 H G +R G LP Sbjct: 1961 AEAHDGSIRLRPTEGGGATFTVALPL 1986 >gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum] gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum] Length = 947 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 151/381 (39%), Gaps = 23/381 (6%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI-ALSISALSNFMLPYAVFLSFFPVVVA 173 + LC+ L + + S +I AL + ++ V L + VA Sbjct: 429 LCFTLCFALTINSYYTGGHQSTIRLLMSTVPIISALVLGRRASIQWSLMVLLIYLSFFVA 488 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + I + + F + + + L Q D+ E ++ + Sbjct: 489 NLYGHEYVQGIPSI-----IIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNA 543 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 + A E A+ FLA+MSHE+RTPLN ++G + ++ K Sbjct: 544 QLTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRD---SHNLPPEEKTMAKA 600 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + G LL L+N+ILDLS++EA + L + ++ ++ +L +A EK I++ + Sbjct: 601 VKSCGDILLRLVNDILDLSKLEANQMGLEHIPFKMRELTQQICHVLSGQANEKGIQLACE 660 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS-------- 404 + + ++ D + Q+++NL NA+KFT G V + V + +S Sbjct: 661 VSDKIPATLVGDSGRILQILMNLTGNALKFT-QSGYVKIIVDLIEEESELVSSRKGEYNI 719 Query: 405 ---IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 IKD G G+ + +F Q + G GLGL + ++ G+ + + Sbjct: 720 SFRIKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMKGEIGVYNN 779 Query: 462 LR-EGVEVIAILPNTRVLNFI 481 EG I+P + + Sbjct: 780 PDCEGSTFWFIIPLEEGTDSM 800 >gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] Length = 956 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 9/258 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 453 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 508 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ A +K + Sbjct: 509 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAVKKRLT 568 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ ID + + D ++QVI NLL+NA+KFT GG + + G ++D+ Sbjct: 569 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 626 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + +M G + S+ G + Sbjct: 627 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 686 Query: 469 IAILPN--TRVLNFIPED 484 I +P +RV+ P D Sbjct: 687 IIRIPLYNSRVVTLEPRD 704 >gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 798 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 135/260 (51%), Gaps = 9/260 (3%) Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD--- 293 E + + E+ +FL ++SHEL+TPLN I ++++EL E ++ I D Sbjct: 528 EAKLKMEKTLKMHEQFLTNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYF 587 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I ++ L+ LI I+DLS+IE+G ++L+ S +++ +V + + + + K++ I Sbjct: 588 IRQNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFD 647 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 D + D + +V+LNL+SNA+KF+ G ++V + IS+KDNG GI Sbjct: 648 TDVEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVNIA-DKNETVEISVKDNGIGID 706 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + F Q + +G G+GL + +SI+ HGG+ SKL EG LP Sbjct: 707 KNHLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELP 766 Query: 474 NTRVLNFIPEDNHESTQYKC 493 RV+ E+ + + KC Sbjct: 767 L-RVI----ENEKSAAENKC 781 >gi|34497668|ref|NP_901883.1| sensor histidine kinase/response regulator [Chromobacterium violaceum ATCC 12472] gi|34103523|gb|AAQ59885.1| probable sensor histidine kinase/response regulator [Chromobacterium violaceum ATCC 12472] Length = 734 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 12/284 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 ++ + + LE +E R +AE +LAKS FLA+MSHE+RTPLN +LG Sbjct: 200 TVIRQLRQLEKRRQTLETLTDNLEEARSQAEAGSLAKSAFLANMSHEIRTPLNGVLGMLA 259 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ + + YI S +HLL L+N++LD S++E+G+ EL+ +L ++ Sbjct: 260 LLADS----HPSASQANYIRTAEESARHLLLLLNDVLDASKLESGKLELAPVTCNLAYLL 315 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 R+ ++ +AQ K + + ++ + V D +RQ++LNLLSNA+KFT GG V V Sbjct: 316 RQVTNLMNAQAQAKGLMLNLEMASEIPQWVELDPTRLRQIVLNLLSNAIKFTERGG-VTV 374 Query: 392 TVGWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 T+G + + D G G+ + + + F QG + G GLGL I+Q Sbjct: 375 HASATAGEQPGTAQLLLVVTDTGIGMDQATLSKLFKRFSQGDGSTARQFGGSGLGLEISQ 434 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHEST 489 S+ GG + S +G LP + +P + E++ Sbjct: 435 SLAQLMGGGISVSSVPGQGSCFQLTLPLRVIAAPDLPPETAEAS 478 >gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 554 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 131 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 190 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 191 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 245 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 LS +SL ++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 246 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 305 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + V S +S+ D G GIA I + F + + +G Sbjct: 306 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 362 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLGL +++S++ G +++ EG I LP VL P T Sbjct: 363 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 412 >gi|239623884|ref|ZP_04666915.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521915|gb|EEQ61781.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1293 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + +A+ + AK+ FL+ MSHE+RTP+NAI G + I + + E + + I + Sbjct: 903 KSKADAVSKAKTDFLSRMSHEIRTPMNAISGMT-TIAKNVLD--DREKTLDCLEKIESAN 959 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +LL+LIN+ILD+SRIE+G+ ELS S + L + + + +A+EK++++ + S Sbjct: 960 TYLLDLINDILDMSRIESGKMELSTSPMDLRQQIDGLEALFRTQAEEKHLDMRFENRYSS 1019 Query: 359 SSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAE 414 + + AD + QV++N++ NAVKFT GG + V V S+ D G GI Sbjct: 1020 TRLLIADGLRLNQVLINIIGNAVKFTEQGG-ITVKVEQLEESPRAVLRFSVADTGIGIEP 1078 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL-- 472 + + +F Q ++ G GLGL IA ++ GG + S++ +G E L Sbjct: 1079 SALDRIFNAFEQAEAGTAASYGGTGLGLSIASRLVQMMGGTLEVSSQIGKGSEFFFTLGF 1138 Query: 473 -PNTRVLNFIPEDN 485 ++ IP+D Sbjct: 1139 DYAQEAISDIPQDE 1152 >gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] Length = 989 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 130/259 (50%), Gaps = 8/259 (3%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++++E N A++ F +SMSH++RTP+N I+G + + + P E + Sbjct: 440 RQDLADALRQSQENNQARTVFFSSMSHDIRTPMNGIIGMTTIAQAHLNEP---EKVAHCL 496 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + QHLL+LINE+LD+SRIE+G+ L + ++L ++ + +I+++ +K + Sbjct: 497 DKISLASQHLLDLINEVLDMSRIESGKISLKKEPVNLSQLISDVLILVKPDLTKKRQTLH 556 Query: 352 QKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIK 406 + +V D +++++LNLLSNAVK+T + + + +++ Sbjct: 557 IRSSALDYDTVLGDTLHLQKILLNLLSNAVKYTPPEQDITIGLHEEPDGDDKIKVIFTVE 616 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G+ + + T F + + S G GLG+ I ++I+ G + S+L G Sbjct: 617 DTGIGMTPEFLTRIFTPFERAQDSRISQISGTGLGMAITKNIVDMMSGTLQVESQLGVGS 676 Query: 467 EVIAILPNTRVLNFIPEDN 485 + LP + ++ Sbjct: 677 KFTVTLPLSTAQTPQLQEA 695 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 154/358 (43%), Gaps = 10/358 (2%) Query: 117 IGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVAL 174 +G W L+ + + ++ A+ + + +L ++ + + Sbjct: 314 LGNKWALVVELPEKEAFARITELEKIFGFGMITAILLVIFVSHLLSNSITAPL--LRLTW 371 Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + + I + + + +S + + ++D ELE + + Sbjct: 372 AAEKASGGDLDQIIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKI 428 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 + + + K FLA+ SHELRTPL+ ++G +E + GPL + + + + Sbjct: 429 IQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDP-QRRQLEML 487 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SGQ L NL++++LD ++ G ++ AI L VR + + K + I +I Sbjct: 488 INSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQI 547 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 L V ADE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI Sbjct: 548 PADLPLVDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPS 605 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + Q + + QG GLGL I++ ++ GG+ + S+ G L Sbjct: 606 EQLEHIFEPLIQANSGSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMVGTTFSFTL 663 >gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 528 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 10/309 (3%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 ++ + V +S + Y+T S ++ + Q E E Sbjct: 78 ILIIFVTAISKETKYAVKGLSTGAVDYLYKPLDPYVTAAKVDSFIQFIRNQREVKKKNKE 137 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 LE + + ++ AE K FLA+MSHE+RTP+N I+G +++++ + + Sbjct: 138 LEAYQKELIKAKELAETGKRIKDNFLANMSHEIRTPINGIIGIAQLLKKTEL----TDEQ 193 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +E + + S LL +IN++LDLS+IE+G+++++ +A +I I + +L++ + EK Sbjct: 194 REMVNLLEISSNSLLGVINDVLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEKK 253 Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QY 402 +++ +D L + AD + Q+++NL+ NA+KFT G V + V + +G Sbjct: 254 LDLKLALDSELPKMILADSLRLNQILMNLIGNAIKFTHQ-GSVTLKVEILNRKGNNLQLR 312 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 S+ D G GIA+ I + +F Q G GLGL I +++ GG + S+ Sbjct: 313 FSVADTGIGIAKENIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEE 372 Query: 463 REGVEVIAI 471 G Sbjct: 373 NIGSTFSFS 381 >gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 723 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 10/249 (4%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +K+AEE N AKS FL++MSHELRTPLNA++G S + E E + Sbjct: 339 ERELLLAKKKAEEANKAKSDFLSNMSHELRTPLNAVIGISLWLLEENPKT----EQLENL 394 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 ++ S + LL+LIN+ILD ++IE E+ +L D ++ +RA+EK + Sbjct: 395 KNLKFSSESLLSLINDILDFNKIEERLVEIERIDFNLKDFLKSITTSFTMRAKEKLLIFN 454 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIK 406 + I ++ + +D + Q++ NLLSNA+KFT + G + + V + Sbjct: 455 EDIKDTVPEFIHSDPTRLLQILNNLLSNALKFTQV-GSITLYVSAIPMDSESVLLTFEVT 513 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI + +V F Q + G GLGL I+++++ GG ++ S++ +G Sbjct: 514 DTGIGIEPNKFQSVFEKFTQANQDTTRKFGGSGLGLAISKALVELLGGHLVLTSEVGKGS 573 Query: 467 EVIAILPNT 475 + LP Sbjct: 574 KFSFSLPCK 582 >gi|298387628|ref|ZP_06997179.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259484|gb|EFI02357.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 641 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 22/287 (7%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A L L + Y+ +K ++EKD + RAEE N K Sbjct: 372 ALFLILVLGLCISLFYYFRTKRLKDDLLKSEKD------------LRVAKDRAEESNRLK 419 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLN+I+GFS+V+ +G E + Y I + LL LIN+IL Sbjct: 420 SAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLINDIL 476 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 DLSR+EA R L+ ++ + R+ + + + +++ + D + D + M+ Sbjct: 477 DLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQRMQ 535 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI+NL+SNA KFT G++ + S+ D G GI + + V F + Sbjct: 536 QVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEKL- 593 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL I + I+ G I S+ G + P Sbjct: 594 ---NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFMFSHPLK 637 >gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 518 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 185/464 (39%), Gaps = 24/464 (5%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAV 82 + + F E + E++ R + + + ++A F + Sbjct: 69 VKRYPRVRQLFGIEFMRQ--ETIVRSAMVAIIVTTVLAGCFAIAHGLATFIY---TMIGY 123 Query: 83 YAANLSLGKKVMN-SDIKIGEVYVWRIWLLVGQIAIGLCW---------TLLTLVEPGTW 132 A + + + + + L ++ G + +T+ Sbjct: 124 QAIAAPDARYFWSLNWLLWLFILFLIKRFLWAKLPFGDEFMNKDKIVKGAAITITVMVIG 183 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 Y A+L+ ++ + + + + F + + ++ ++ ++A Sbjct: 184 IGCMAVAYLFASLIHSIVMGYRYSVPEEAPPYFNLFWFCIWILLLLMIKWYLKHRNIAKY 243 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + + + + L + +KD+ + L + ++ + E + F Sbjct: 244 IDLFAAVIRALESIAKGNFNVRLDDKFKKDESFSRLVKSVNMMASGLDQME---KMRQEF 300 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 ++++SHE+++PL +I GF+++++ + + P E K Y+ I + L L + +L L+ Sbjct: 301 ISNVSHEIQSPLASIQGFAQLLQNDELSP---EERKHYLSIIETESKRLSKLSDSLLKLA 357 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 +E+ A L +R I+ + + +EK I + +D ++ ADE M QV Sbjct: 358 ILESDSMRFEPKAYRLDKQLRNLILACEPQWREKRINMEAFLDE--VTITADEDMMSQVW 415 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NL+ N++KFT GG V V + G+ I D G GI E + + F + + + Sbjct: 416 INLIYNSIKFTPEGGSVRVDLNQ-HGKTIVCKISDTGIGIPEEDQKHIFERFYKADKSRE 474 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +++G GLGL I + I+ H G ++SK G LP R Sbjct: 475 RSKKGGGLGLSITKKIIDMHYGDISVQSKSGTGTTFTVSLPIQR 518 >gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 779 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 355 FWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 L +SL ++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 470 VSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNLPDEIGVVADRQRLIQVLLNLLS 529 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + + T+ + +S+ D G GIA I + F + + +G Sbjct: 530 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +++S++ G +++ EG I LP RV Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 630 >gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 933 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V T G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RTDGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|295691446|ref|YP_003595139.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295433349|gb|ADG12521.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 584 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 103/464 (22%), Positives = 179/464 (38%), Gaps = 31/464 (6%) Query: 35 REIITLHVESLFRV-SPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 T H + R + + + +A I F +W+ I ++ L + V Sbjct: 2 ERRRTAHALASRRANTSLRLIAAFAIALILDVFIHLRWVWLWAAIYASLQFVELWGWRWV 61 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTI----YKSATLLIAL 149 + ++ R+ + V + + L+L + T+ A L + + Sbjct: 62 RGRSERAQALWR-RLTITVLPVLTSTVFGFLSLPLFASQARFAPTLGGMLLAGALLNVVV 120 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + ++ + + ++V L ++ L +L ++ T + L Sbjct: 121 INGSQRAAIISASTPYVLYLLIVPLVARSANPGSPLANALWFGALLLIATVTIAAHTLHT 180 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 + + E + R AEE AKS F+A +SHELRTP++AI+ Sbjct: 181 ALRAEAEAKDEAERR--------------RHEAEEAVAAKSAFVAMISHELRTPISAIMA 226 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + + E + K I +G + L+N++LD SR+EAGR + ++ +L Sbjct: 227 GATRLHSEV----PEASSKVQAQLIADAGGLMRGLLNDLLDFSRLEAGRMSVEKAPFNLR 282 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR 388 + + + + + A K + + K +L V D +RQV+ NLLSNA+KFT G Sbjct: 283 QTIADTVRLWRPEATRKGLRLRVKGAAALPRWVAGDAMRLRQVLNNLLSNALKFTTR-GE 341 Query: 389 VHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + V I + D GPGI E + + T F Q S AI G GLGL I+ Sbjct: 342 ITVAPRAEIEGSVVLLSIEVIDTGPGIPEAALSRLFTPFEQLSEAIARHHGGSGLGLVIS 401 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 + + GG S G + P D +S Sbjct: 402 RELARLMGGDLSASSPSGGGARFTIT--ARLEIAEAPADAPQSP 443 >gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL J2-003] Length = 591 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + +++ + + A EKNI++ + ++ SV D Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina MBIC11017] gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 691 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 21/320 (6%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L + + L L + + + + EL Sbjct: 145 LKIDLTRQRLLTTVITTLRSYRDLVTLDATNKELDTLYSQQIVANQQIERQQQELIAQNQ 204 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +++A + N AKS FL +MSHELRTPLNA+LG+++++ E + + Sbjct: 205 ALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQSFTKE----LET 260 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I+R G+HLL LIN++LDLSRI++G+ L+ + ++++ + +AQ K ++ + Sbjct: 261 INRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTKAQHKGLDYQLE 320 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---------------S 397 L V DE +RQV++NLLSNA+KFT G + + T Sbjct: 321 WGSDLPHYVRTDEGKLRQVLMNLLSNAIKFTEQ-GHITFRIHQTTVVSKLNEELHLPLTP 379 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++D+GPGI+ E+ + F QG A ++G GLGL I+ ++ GG Sbjct: 380 HYWLNFEVRDSGPGISVSELENIFHPFIQGEQARSVVDEGTGLGLAISHQFVSLMGGNLS 439 Query: 458 IRSKLREGVEVIAILPNTRV 477 + S L G +P R Sbjct: 440 VSSSLGAGSCFKFSVPVERA 459 >gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 1070 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + D + + AKS FLA MSHE+RTPLNAI+G +++ + ++ + Sbjct: 414 RQQRKTLDTLTQDLRKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQR----AAEDKEQQ 469 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + I + Q LL++IN+ILD S+IEAG+ ++ + +L +V + I + RAQEK+I Sbjct: 470 TNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHI 529 Query: 349 EIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ-YISI 405 E+ Q I + ++ D ++QV+ NLLSNA+KFT G V V S Q + Sbjct: 530 ELIQHISRDVPLNLIGDPLRIQQVLNNLLSNALKFTEDGLISVSVRCEQVSEDIQLEFEV 589 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD+G G++ + F QG I G GLGL I + + A GG+ + S+L +G Sbjct: 590 KDSGVGLSSAHQALLFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVESQLGKG 649 Query: 466 VEVIAI 471 Sbjct: 650 SIFHFT 655 >gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 531 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 10/270 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---------NLAKSRFLASMSHELRTP 263 ++ + + +L+A + ++ +S+E R +AE N AK+RFLA++SHELRTP Sbjct: 201 EMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTP 260 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILGFS+V+ E G L N+ +EY+ IH+SG HLL+++N +LD+S+IEAGRYEL Sbjct: 261 LNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLL 320 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + + C ML +A+EK + + ++ S+ + AD++ +Q+++NL+ NA+KFT Sbjct: 321 EPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFT 380 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V G +++ D G GIA ++ + F Q +G GLGL Sbjct: 381 DRGGLVTVDAAL-EGNMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLS 439 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + + HGG IRS EG ++ +P Sbjct: 440 LVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469 >gi|298249772|ref|ZP_06973576.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547776|gb|EFH81643.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 569 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 82/458 (17%), Positives = 159/458 (34%), Gaps = 42/458 (9%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 L+ A + F +F +W+ + L+ + Sbjct: 91 LMAACVLVIFLLEMVFLVWTPFPSLSGLNAIIWSDYADRFRSTDVAHAPAT--SLIIDVF 148 Query: 117 IGLCWTLLTLVEPGTW-----------TPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 + C L + + ++ + LS F+L + F Sbjct: 149 LSFCSAGFFLFLRAAIRVLQAWNRLRKQHLSWALTHAIMMIPMFGVGVLSLFILFASAFS 208 Query: 166 SFFPVVVALST--QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-------- 215 P + L +S + L +L L F + + + ++ Sbjct: 209 YSKPENLPLYLFLNLFLSGAAIAAILVFVLPPVLLFSNFFARRITQRIETLVSAASAMRA 268 Query: 216 ----------------SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 Q + + + A LE E R + + +AS+SHE Sbjct: 269 GNYSIRIPVQGEDEVARLQNDFNAMAAHLEETLHELQEERDNVAQLLNERRELVASVSHE 328 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTP+ + G+ E + ++ + I++ L LI+++ L+R E G+ Sbjct: 329 LRTPVATMRGYLESTLAN-WNEVPPTMLRQDLNVINQQTVRLQGLIDDLFALARAEVGKL 387 Query: 320 ELSESAISLIDIVRECIIMLQLRA-QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 +L + + +++ + +L A + +EI + +L DE + Q++ NLL+N Sbjct: 388 KLRCAPSHVDVLIQRLVDVLAPLAWRGSRVEIIADVAANLPQALVDEARLEQILQNLLNN 447 Query: 379 AVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 V+ T GG + V+ + + IKD G GI E+ + F + + + G Sbjct: 448 GVRHTPPGGIISVSAQADLAHEEIVLQIKDTGEGIPAEELSHIWERFYRTEKSREQPASG 507 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 GLGL I + + GG + S++ G P Sbjct: 508 TGLGLAIVKEMTEAMGGSVEVESEVGLGTCFTLRFPLA 545 >gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980] gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70] Length = 2208 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 18/275 (6%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---AEEENLAKSRFLASMSHELRTPL 264 F +++ + +A L AE A S E AEE AKS FLA++SHELRTPL Sbjct: 1635 FNNSMVDVQRRALAKALEAET-NANSAKAEALHNVKLAEEAAKAKSIFLANVSHELRTPL 1693 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G SE++ + + E I S LL +IN+ILD S++EA + +L Sbjct: 1694 NGVIGNSELLRDSDL----RKDQAEMADSIRVSADLLLTVINDILDFSKMEADKMKLFIV 1749 Query: 325 AISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 A + +++RE + + + + +N+EI Q I+ ++ D + QV+ NL+ N++ Sbjct: 1750 AFNADEMIREVVRSVSYSNRDKRSSRNVEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSL 1809 Query: 381 KFTAIGGRVHV--TVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G + V W + ++ +KD G GI ++ + F Q + Sbjct: 1810 KFT-ENGSITVGAKTDWETKDTVKLTFWVKDTGIGIPRQQLLKLFKPFSQADNSTARRYG 1868 Query: 437 GVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIA 470 G GLGL I +S++ GGQ + S +G V Sbjct: 1869 GSGLGLSICKSLIQSMMGGQIELESVENQGTIVWF 1903 >gi|153813961|ref|ZP_01966629.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756] gi|317501489|ref|ZP_07959687.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088039|ref|ZP_08336960.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848357|gb|EDK25275.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756] gi|316897118|gb|EFV19191.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330408995|gb|EGG88454.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium 3_1_46FAA] Length = 444 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 6/301 (1%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L++ A+ M V+ I + A + + T L K ++ + D+ EL Sbjct: 146 LASTAVSLMPVMGILAVLTILFAFALARWQTNRLIKPINELDLERPLDSDIYEELSPLLE 205 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 D + E + F A++SHEL+TPL +I G++E+++ + P E + Sbjct: 206 AMDRQNREKEAVANMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRP---EDISGFSER 262 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I++ + L+ LI +I+ LS+++ EL + + L ++ RE + L +A +KNI I Sbjct: 263 IYKEARRLITLIEDIIKLSKLDEESVELEKEDVDLYELTREIVSRLSPQAAQKNIRIELS 322 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + + + +++ N+ NAVK+ G+V V G T + IS+ D G GI Sbjct: 323 GES--VHYHGIRQILDEMVYNVCENAVKYNYENGKVSVWAGNTLNGPK-ISVSDTGIGIP 379 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + + G GLGL I + HG + + S+ G ++ P Sbjct: 380 KEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGALLHGAKVSVESEEGRGTKISMQFP 439 Query: 474 N 474 Sbjct: 440 R 440 >gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 1248 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 87/257 (33%), Positives = 152/257 (59%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AE N K+ FLA +SHE+RTPLNAI+GF++++ E GP+ Sbjct: 990 RDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADMMATERFGPI 1049 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y EY DI RSG+H+L+++N++LD+S+IEAG+ ++ A+ L + V E + ++Q + Sbjct: 1050 GHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQPQ 1109 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + S+ + AD + ++Q++LN+LSNA++FT GG++ V+ + + Sbjct: 1110 ANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSVA 1169 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461 + I+D G G+ E+ + F Q + + K G GLGLP+ ++++ + F I S Sbjct: 1170 LRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITST 1229 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1230 PNEGTLVEITFPSQRVL 1246 >gi|307152684|ref|YP_003888068.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982912|gb|ADN14793.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 584 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 135/270 (50%), Gaps = 4/270 (1%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + + + E+ + E E R+ AE+ N K F+ +SHELRTPL Sbjct: 172 QLIEVAQSLTAIAIERQKMDEERNQLLLKEREARQEAEQLNRIKDEFVMMLSHELRTPLT 231 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AILG+S++++ + N+ ++ I I R+ + LI+++LD+++I +++L + Sbjct: 232 AILGWSQLLKKRLIHEQNS--CQKAIETIERNAKLESQLIDDLLDITKILTDKFKLKKDI 289 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 + L +++ + L L A+ K I I I+ V DE+ ++Q+ NL+SN++KFT Sbjct: 290 VYLESLIKLTVDSLLLTAEAKEIPINIMIESPKLKVLGDERRLQQIFWNLVSNSIKFTEA 349 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 GG + + + + I+I D G GI +P V F Q + + G+G+GL I Sbjct: 350 GGLITIKLQREQEQ-AKITITDTGIGIKPALLPFVFDRFWQADSSSQRMAGGLGIGLSIV 408 Query: 446 QSIMANHGGQFLIRS-KLREGVEVIAILPN 474 ++ H GQ + S +G +LP Sbjct: 409 HRLVELHQGQVIAESLGEGKGATFTVLLPL 438 >gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199] gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199] Length = 414 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 130/230 (56%), Gaps = 1/230 (0%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +K+RFLA+MSHELRTPLNAI+G SE+I E G + + Y EY DI+ SG HLL+LIN+ Sbjct: 183 SKTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATDINDSGLHLLDLIND 242 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILD SR+E G+ L + I + D++ + + +E+++ ++ S + AD + Sbjct: 243 ILDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGS-PILTADRRA 301 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 MRQ++LNLLSNAVK T GGRV +T G I ++D G GI + + F Sbjct: 302 MRQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVD 361 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + + G GLGL I + ++ HGGQ I S G V P RV Sbjct: 362 EEISVTRQGGAGLGLAITKRLVERHGGQISIDSSEGFGTSVRLSFPPGRV 411 >gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] Length = 354 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 33/359 (9%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV---------LDIS 188 + ++L +++ ++ A F + A+ T+ H Sbjct: 4 LWFVFKSILTVIAVMSIICLFWSAAYF-----ITEAIYTRFAWQPHPLVRQIISSIFGFL 58 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE------------LEVAKSLSD 236 L GM +A+ F +F ++ + K D E+ ++D Sbjct: 59 LFGMTMSAIGPFLRKRERVFWHHLIDAINRIAKGDFRVNLQVDWGGRHHPFAELVTRIND 118 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + + F++++SHE+ +PL +I GF+ ++ E + + E Y+ I Sbjct: 119 MA-ANLQAMEDMRQEFISNVSHEIGSPLTSIRGFARALKNENL---SQEQRMHYLDIIET 174 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 L L +L L+ +++ RY L ++ L ++ I+ + + EK++++ ++ Sbjct: 175 ECVRLSKLSENLLRLAMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEK 234 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 S+ ADE + QV LNL+ NA+KFT GG + V V + ++I D GPGI + + Sbjct: 235 --VSITADEDLLSQVWLNLIHNAIKFTPKGGTITVQVQRRGEQ-AIVTISDTGPGIPKHD 291 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 P + F + + A G GLGL IA+ I+ H G ++S+ EG LP Sbjct: 292 QPRIFERFYKVDKSRHRAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELPIR 350 >gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 667 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E N AK++F++++SHELRTPL +I F E + E ++ E +Y+ +R L Sbjct: 402 ELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSPEERLDYLEIANRETDRLTR 460 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDLSR+E+G+ + A+ + ++ + + L+A++K I++ + +DP L VW Sbjct: 461 LVNDVLDLSRLESGK-QYHFEAVDIAAVIEQTLRTHHLQARDKGIQLRKFVDPDLPLVWG 519 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIP 418 + + QV+ NLL NA+KFT GG V V S + +++ D G GIA + Sbjct: 520 NYDLLLQVMTNLLGNALKFTPSGGLVTVHAHPVVQADGSPQAVRVAVADTGIGIAPEDQE 579 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + +G GLGL I ++I+ H + + SKL +G L Sbjct: 580 RIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHHTRICLESKLEQGSTFWFDL 632 >gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis E264] gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 952 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 93/435 (21%), Positives = 168/435 (38%), Gaps = 34/435 (7%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T L + + LL Sbjct: 286 VLVHAYSWKTIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYRRA--QRLLES 343 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + + +N ML + S P+ Sbjct: 344 EVLNRAILRTAPVGLGLLSAHDGSVLLQ-------------NNAMLELSARTSGEPLPNR 390 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAE 227 L + + +L L+ + ++ ++NV + L I+ Sbjct: 391 LWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISM 450 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + ++ E R +++ N AKS FLA+MSHE+RTPLNAI+G E++ + Sbjct: 451 RKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQ 506 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 E + + LL++IN+ILDLS++E+G+ L + +++E + A+ K Sbjct: 507 SERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKG 566 Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY 402 +++ + ++ + D +RQ++ NL+ NA+KFT G + V V Sbjct: 567 LQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIE 625 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GI I T+ + Q +I G GLGLP+ + + GG + S Sbjct: 626 IWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLP 685 Query: 463 REGVEVIAILPNTRV 477 G V +LP Sbjct: 686 DFGTTVTVVLPLREA 700 >gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8] gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8] Length = 489 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +R + + K+ F+A++SHELRTPL AI ++E I +G L+ T KE++ Sbjct: 234 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFL 292 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I HL NL+NE+LD SR+E +++ + L D+V + ++ A N+ + Sbjct: 293 EVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL 352 Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKD 407 + + P + D +RQV+LNLL+N VK++ V V + G I ++D Sbjct: 353 FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVED 411 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG GI + + F + ++ G GLGL I + I+ HGG+ + S++ +G Sbjct: 412 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSR 471 Query: 468 VIAILPNTRVLN 479 +P R Sbjct: 472 FFVWIPKDRAGE 483 >gi|154252774|ref|YP_001413598.1| integral membrane sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156724|gb|ABS63941.1| integral membrane sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 591 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 91/429 (21%), Positives = 170/429 (39%), Gaps = 15/429 (3%) Query: 52 LPLFVLLVANIGTWFTQNPIFPMWSLIT-LAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 + + ++A + + +W GE + + + Sbjct: 32 IGVVTAVMALLVYVWPGEVWPFVWYAAMCAFSGGLAALAWYYTHRRPADEGEAHPYGLAH 91 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFP 169 +G+ W L G T ++ + + L ++ A+S+ +LP + F+S + Sbjct: 92 TGLTTLVGITWG---LGAFGAATGDFHHLLVYSLALGGTALGAVSSQHVLPRSCFVSLWT 148 Query: 170 VVVALSTQAIM-SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 V L I ++ GM+ + +T + + + D +AE+ Sbjct: 149 SVPLLGLAHIFHDPGFFGATIFGMIMLYAGVLSILTVRMLRFMRTNVDLTRSLDAKLAEI 208 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + +E R A E NL+KSRFLA SH+LR P++AI F+ + + + Sbjct: 209 TEMAAELEEARHEAVEANLSKSRFLAHASHDLRQPIHAIGLFTACLRDLDLET----EAR 264 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 +++ I + + + L+ +LD+SR++ G E +L + +R I A++ Sbjct: 265 QHVRSIDDAARSVSRLLGSLLDISRLDVGGVEPQPERFALEEFLRGIIRQNADAARDGGG 324 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 I + V D +I N++SNA+K+ G V + V G + I D+ Sbjct: 325 TIEMETRD--IWVNTDPALFSTMIQNIVSNALKYAP-GSNVRIVVRR-EGGRAVLEISDD 380 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 GPGIAE ++ + F + G+GLGL I + + G + I S G + Sbjct: 381 GPGIAEQDLRHIFDEFYRAEGGDAPKPDGLGLGLAIVRRLAGLLGLEVEIASAAGRGTTL 440 Query: 469 IAI-LPNTR 476 LP + Sbjct: 441 RISGLPLSE 449 >gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 918 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 128/272 (47%), Gaps = 14/272 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + ++ AE N AKS FLA+MSHE+RTPLN ILG +++E + Sbjct: 521 ITERKREEKELLLAKEHAEAANRAKSEFLANMSHEIRTPLNGILGMLQLLETSV----QD 576 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++ +S L +L+++ILDLSR+EA + +L + + I + A Sbjct: 577 KEELQFCALAIQSTNRLTSLLSDILDLSRVEASMMLIRSERFNLHSALTQTIDLFGPVAV 636 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---- 399 + + + +DP L V D ++QV+ NL+ N+ KFT G VHV R Sbjct: 637 QTGVTLTAHLDPGLPIWVVGDSIRLQQVLTNLIGNSFKFTKR-GHVHVEAYPLPSRSIDT 695 Query: 400 -GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + +I+D G GIAE +I + F Q S QG GLGL I++ ++A GG + Sbjct: 696 LRVFFAIEDTGCGIAEKDIGNLFQPFTQVSQGYNRNHQGAGLGLTISKQLVALMGGNMAV 755 Query: 459 RSKLREGVE--VIAILPNTRVLNFIPEDNHES 488 S+ G + V E ES Sbjct: 756 ESEEGVGTTFAFCVTF-SKEVQPHDDEAAPES 786 >gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 591 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTP++ I G++E + + + + + +I IH + L LI ++ Sbjct: 365 RRDFVANVSHELRTPVSVIQGYAETLLAGAL-ESDPDRARRFIQVIHNHAERLSALIADL 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L LS +E+G+ L ++L V++ + +L RA +K I + + V AD+ + Sbjct: 424 LTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVLADKGKL 483 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NLL NA+K+T G+V VT IS+ D G GI ++P + F + Sbjct: 484 DQVLVNLLDNAIKYTPGNGKVTVTAE-DEAEMLKISVTDTGLGIPAKDLPRIFERFYRVD 542 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A + G GLGL I + I+ +HGG ++S EG L Sbjct: 543 EARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTL 586 >gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis] gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] Length = 857 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGL 575 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + ++ V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721 >gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 936 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 8/265 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 LS A I E ++ + E + +AE +KSRF+A++SHE+RTPLNA++G ++++ Sbjct: 378 LSSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSADIL 437 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + Y I S LL++++++L SR EA L S+ + E Sbjct: 438 HHTGLTS----EQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTCIEE 493 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVT 392 I ++ A +K +E+ P + V D +RQ+++NLL+NA+KFT G V V Sbjct: 494 AIDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHGVITVTVR 553 Query: 393 VGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 G ++S+KD G GIA+ +I ++ F Q +I G GLGL I + I Sbjct: 554 CTHIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICKQICD 613 Query: 451 NHGGQFLIRSKLREGVEVIAILPNT 475 GG + S+L +G E I P Sbjct: 614 VVGGDISVSSELNKGSEFIVNYPLQ 638 >gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 2319 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS F+A++SHELRTP+ +I G+ E++ L G L + ++ + + + L L+ Sbjct: 2085 DRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELT-PQQRHFLEIVKNNTERLGVLV 2143 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML--QLRAQEKNIEIFQKIDPSLSSVWA 363 N++LDLSRIE+G+ L+ + ++L + E + + + + +EK + +++ +L +V Sbjct: 2144 NDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEVEENLPTVRG 2203 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DE+ +RQVI NL+ N +T G V V + + + ++D+G GI+ + + Sbjct: 2204 DEERIRQVITNLVVNGYNYTPENGHVWVRIFR-NDGEVQVDVQDDGIGISIEDQERIFER 2262 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAILPNTRV 477 F +G + G GLGL +A++I+ H G+ +S EG LP V Sbjct: 2263 FYRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSSGIRGEGSTFSFTLPLNPV 2318 >gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1194 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 3/283 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L + + L ++NV++ + ++L A+ R E+ + KS F Sbjct: 433 LMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAARLEQSSRYKSEF 492 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L +++++ G L E + Y IH S LL LIN+ILDLS Sbjct: 493 LANMSHELRTPLNSSLILAKLLQQNRAGNLTEEQVR-YAETIHASNSDLLVLINDILDLS 551 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +S+ ++ M + A + + + + P + +D + + Q+ Sbjct: 552 KVEAGQVTVELETVSIDATLQALEEMFKPMAAARQLRLAFERLPGTPDTFISDGQRVTQI 611 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNAVKFT G V ++V G I ++D+G GIA ++ + +F Q + Sbjct: 612 LRNLLSNAVKFT-EHGEVALSVAPAEGGMLRIDVRDSGIGIAPDKLDMIFEAFQQADGST 670 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLGL I++ GG+ + S++ +G LP Sbjct: 671 SRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713 >gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 115/483 (23%), Positives = 206/483 (42%), Gaps = 36/483 (7%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPM---------WSLITLAVYAANLS 88 + + + RV+ L L A I + Q P+ + A + Sbjct: 129 LEAALSASRRVAAFASLLALSCAGILIFVGQLGWLPLDAPGAAERSLLMAFGVASATLYA 188 Query: 89 LGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIA 148 G + V + ++ + ++ I +A ++ Sbjct: 189 AGLAFGAESLARTGVALLSREEERYRLLAR---NMSDVISRHRRNGAVQFISPAAEAMLG 245 Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------------LATA 196 + ++ L L V ++ P + + +V + Sbjct: 246 MPVAQLHGHGLFDRVHVADRPAYLT-ALSDAARGNVRSVEFRLRREPTGSERGQVDFIWV 304 Query: 197 LSFFTYITYHLFKSNVKILSCQ----AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + L + ++ + + + ++++ D+ R AE + AK+RF Sbjct: 305 EMRCRPLDQDLGRQDIDRDVARETEVVAVMRDVTDRKLSEQALDQARSAAEAADAAKTRF 364 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLNAI+GFS++I E L KEY I+ SGQHLL+++N ILD+S Sbjct: 365 LATMSHELRTPLNAIIGFSDMIAQEQALMLGAAQRKEYAQVINDSGQHLLSVVNGILDMS 424 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 ++E+G +E++ + + C +L L+A+E I++ L + D + +Q++ Sbjct: 425 KMESGNFEIASEPFAPRASLMHCCNLLALKARENGIDLITDAPQDLPVMTGDPRAFKQIV 484 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNL++NA+KFT GG+V V+ SG + I D G GIA ++ + F Q + Sbjct: 485 LNLVANAIKFTERGGQVSVSAA-VSGSHLTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQ 543 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN------TRVLNFIPEDNH 486 +G GLGL I +S++A H G ++S+L EG V LP + + +P ++ Sbjct: 544 RRHEGTGLGLSIVKSLVALHLGDLTVQSRLGEGTAVTVKLPLVYTSPQAKPADRMPAESK 603 Query: 487 EST 489 +T Sbjct: 604 IAT 606 >gi|332993865|gb|AEF03920.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 798 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 8/253 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L+ + +L +++AE + K+ F++++SHE+RTPLNAI+GF +V+ L Sbjct: 406 LLKKARKTNALYISAKEKAELHSRLKTEFISNISHEIRTPLNAIIGFGQVLTD----KLE 461 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ K+ I S + LL LIN++LD S+IEAG+ L +L +R+ + + +A Sbjct: 462 DKQTKKLTSQIVNSSEMLLQLINDLLDFSKIEAGKLALDYGPYNLRQSIRKLLDIFHAQA 521 Query: 344 QEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401 K + I ID L + DE ++QV+ NL+SNA+KF++ G + + V Sbjct: 522 SNKGLTIKLNIDKELPKEMIFDELRLKQVLANLISNAIKFSSAGDIEIGIKVKQKDNTHC 581 Query: 402 YI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++DNG GI+E + + F Q + G GLGL I ++ + + Sbjct: 582 LFDVWVQDNGIGISESQQENLFQPFIQAESSTARKYGGSGLGLNICNKLLEQMSSKLHVV 641 Query: 460 SKLREGVEVIAIL 472 S + +G L Sbjct: 642 SAIGQGSRFYFTL 654 >gi|330965367|gb|EGH65627.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 641 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 157/394 (39%), Gaps = 27/394 (6%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + + +G +L + + I A +L + Sbjct: 119 IRHQRTAGHTAPAARRETQDAASPDYLGR---VLVGMSSEAFNRRQQEILLKAGILALCA 175 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKS 210 + ++ LS + + +AI H M + + + H+ Sbjct: 176 LLFTFLLARRLSLSLSRPISDMGEALKAIQQGH----YHTPMPVSDDAELGALARHINSL 231 Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + E + + + +TR+ AE N AKS FLA MSHELRTP+N +LG Sbjct: 232 AENLHRTSLE-------QQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGM 284 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 +++E M + EY S +HLL +IN+ILD SRIE ++ A +L + Sbjct: 285 LQLMETTRM----TDEQSEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAE 340 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +V A ++ + + + P L +V D +RQ+++NL+ NA+KFT GR Sbjct: 341 LVSASTHAFNHSALQRKLLLELHVQPGLEAITVIGDPTRIRQILVNLIGNALKFTEE-GR 399 Query: 389 VHVTVGWT--SGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 V + W + + D+G GI + ++ +F Q +I G GLGLPI Sbjct: 400 VCIEADWVMLEDEQLRFTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPI 459 Query: 445 AQSIMANHGGQFLIRSKLREGVEVI--AILPNTR 476 A+ + GG S G LP +R Sbjct: 460 ARKLAERMGGTLCAESVEGAGSAFTLQIALPVSR 493 >gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223] gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223] Length = 857 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 145/293 (49%), Gaps = 16/293 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKM 487 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + + +E++ + SG+HLL ++N+ILD SR+E Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNL 375 G++ + +S L ++V + + +K I + + + + ++ V +D+ + Q++ NL Sbjct: 544 GKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIALVVESNITSATLVRSDQIRINQILFNL 603 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 604 LNNAIKFTHQ-GSIRVALELIEGDPLAQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTT 662 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 G GLGL I S++ GQ + S+ G LP V + P+ Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQLPIELVEMTATPQQ 715 >gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 823 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEYI--- 291 AE E + K+ F++++SHELRTPL ++LGF+++I+ + ++ + Sbjct: 334 AEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKINRAVNQV 393 Query: 292 ----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 I G L NLIN++LD++++EAG+ E +S+ +V I K Sbjct: 394 ASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATTSLFNNKP 453 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I++ + +L + D + QV +NL+SNAVKFT G V + + +S+KD Sbjct: 454 IKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTET-GNVTLKLMAVKS-AIKVSVKD 511 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + V F Q + + QG GLGLPI Q I+ +HGG + S++ G Sbjct: 512 TGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVESQVGVGST 571 Query: 468 VIAILPN 474 LP Sbjct: 572 FYFTLPL 578 >gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 781 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM----TIADNA 453 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626 Query: 465 GVEVIAILP 473 G +P Sbjct: 627 GSTFRFTIP 635 >gi|81427691|ref|YP_394689.1| two-component system, sensor histidine kinase [Lactobacillus sakei subsp. sakei 23K] gi|4104603|gb|AAD10264.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K] gi|78609331|emb|CAI54377.1| Two-component system, sensor histidine kinase [Lactobacillus sakei subsp. sakei 23K] Length = 632 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 25/254 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + F++++SHELRTPL ++ + E + + E ++ ++ +I Sbjct: 372 EREQREFVSNVSHELRTPLTSVRSYIEALNDGAW--QDPEVAPNFLKVTQEETDRMIRMI 429 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE---------------- 349 N++L LSR++ G +++ ++L + + + + Sbjct: 430 NDLLSLSRMDQGTAKMNLEFVNLNEFFGYVLDRFDMMIKRDQEHDNNASPRGTGKLPTDD 489 Query: 350 ------IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 I + V D QV+ N+++NA+K++ GG + + T R + Sbjct: 490 PNKKYSITRDFTKRDLWVEIDTDKFMQVVDNIMNNAIKYSPDGGVITCRLLETH-RHVIL 548 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 SI D G GI ++ + F + A + G GLGL I++ ++ H G+ + S+ Sbjct: 549 SISDQGLGIPRKDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVIEAHNGRVWVDSQEG 608 Query: 464 EGVEVIAILPNTRV 477 +G LP + Sbjct: 609 KGSTFYISLPYEPI 622 >gi|298486528|ref|ZP_07004588.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159005|gb|EFI00066.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 645 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNRSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1166 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 171/423 (40%), Gaps = 28/423 (6%) Query: 91 KKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALS 150 + + +G+ R + V + L + L I +L + Sbjct: 427 DRFRLGESLVGQAARSRRTIEVDGVPADYVSISSGLGRATPGSLIVLPIVVDDQILGVIE 486 Query: 151 ISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------IT 204 +++ + F + FL V + I++ D L A Sbjct: 487 LASFTPFTPIHRDFLEQLMETVGGNVNTIVANARTDELLGESQRLASELQARSEELQVQQ 546 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMS 257 L +SN ++ A ++E ++ R+ E+ + KS FLA+MS Sbjct: 547 EELQRSNAELEEKAALLAAQNRDIEGKNLEIEQARQELEDRAHQLSLASKYKSEFLANMS 606 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L ++++ L EY G IH +G LL LIN+ILDLS++EAG Sbjct: 607 HELRTPLNSLLILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEAG 665 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + +++ ++L ++ + +K+++ P + + D+ +RQV+ NL+ Sbjct: 666 KMDINPERVALAQLLDYVDATFRPLTTQKSLDFTIHTAPGVPVDLLTDDSRLRQVLRNLI 725 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRG-----------QYISIKDNGPGIAEGEIPTVLTSFG 425 SNAVKFT G V V + + ++D G GI E ++ + +F Sbjct: 726 SNAVKFTER-GSVRVRIEPATDGELPASVHRGGAVVAFRVEDTGIGIPEQQLEAIFGAFQ 784 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPED 484 Q G GLGL I++ I GG RS G LP R + P+ Sbjct: 785 QADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFTLYLPVARADFHDTPDS 844 Query: 485 NHE 487 HE Sbjct: 845 GHE 847 >gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23] Length = 1403 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 14/247 (5%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS+FLA+MSHE+RTP+ +LG +E++ + +E ++YI +I S LL +IN Sbjct: 820 RLKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYIDNIQSSATSLLTVIN 875 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS---SVWA 363 +ILD S++E+GR ++ E SL +V+E + ML+ + KN++ I + V Sbjct: 876 DILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIG 935 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPT 419 D +RQ+I NLL+N++KFT G V +V S ++D G GI E Sbjct: 936 DPGRVRQIITNLLTNSIKFTNQ-GYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKR 994 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F QG + G GLGL I ++++ G+ ++ S + G + +P + Sbjct: 995 LFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNK--P 1052 Query: 480 FIPEDNH 486 P +H Sbjct: 1053 HGPRKSH 1059 >gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14] Length = 696 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 135/266 (50%), Gaps = 10/266 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 D + ++ K + E +K AE E + AK+RFL +MSH++RTP+NAI+GFS+++ Sbjct: 280 DQICSKKRREKQYAAELKKSAEQAKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNL 339 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 N E +EY+G I SG L+ +I+++L+ +RIE+G L A +L ++ + Sbjct: 340 ---KNEEKAREYLGKIKSSGNFLMTIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTV 396 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + Q K I+ + D+ ++++ LN++SNA+K+T G +HV + T+ Sbjct: 397 FESDIQSKEIQYSIDTNIQHKYAVCDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETAS 456 Query: 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +D G G+ + +P + F + A ++ G GLGL I +S + GG Sbjct: 457 DDKKAWYVFICEDTGIGMKQEYLPHIFDEFSREHTATENKVVGTGLGLSIVKSFVELMGG 516 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNF 480 + + S+ +G + +P Sbjct: 517 KIYVESEQGKGTKFTVEIPLEIASEE 542 >gi|325916989|ref|ZP_08179230.1| putative periplasmic ligand-binding sensor domain [Xanthomonas vesicatoria ATCC 35937] gi|325536799|gb|EGD08554.1| putative periplasmic ligand-binding sensor domain [Xanthomonas vesicatoria ATCC 35937] Length = 1185 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 139/256 (54%), Gaps = 10/256 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + ++ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ + Sbjct: 785 RMRAQWQVAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTSL----DAR 840 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L ++ + + +++ A++K Sbjct: 841 QQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDNRDFDLRLLIGQAVELVRPSAEQK 900 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQY 402 + +D +L ++ D ++Q++LNLL NAVKFT GG V + V + +G Sbjct: 901 QLAFECALDDALPPALHGDASRVQQILLNLLFNAVKFTERGG-VQLRVSALPQSPAQGIR 959 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + + D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 960 VEVCDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVSVDSE 1019 Query: 462 LREGVEVIAILPNTRV 477 L +G + LP V Sbjct: 1020 LGQGACFVVELPLRWV 1035 >gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1009 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 164/394 (41%), Gaps = 11/394 (2%) Query: 85 ANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTL--VEPGTWTPEYLTIYKS 142 A + + V + + G L + Sbjct: 354 ALIIASRDVTARRAADDALRESEARHRLLAERTGDVIARADLDGTLRYLSPSVEPVTGYA 413 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA--GMLATALSFF 200 A L+ S A + V + +V A + + L + Sbjct: 414 ADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAKFEYRVRHRHGHDVWLEVNPTVL 473 Query: 201 TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + V + + + AEL A+ ++ R AE + AK+ FLASMSHE+ Sbjct: 474 YDEATGVPLGFVDVARDVTARKAVDAELAAAREQAEAARVHAELASQAKTDFLASMSHEI 533 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 RTPL++++G++E++ P E + I +G LL ++++ILD S+IEAG+ + Sbjct: 534 RTPLSSVIGYTELLLD---DPDLTEGQRLQASRIRSAGSALLTVVDDILDFSKIEAGQVD 590 Query: 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNA 379 L +L ++ + +++ A+ K +EI IDP+L ++ D+ +RQ++LN L+NA Sbjct: 591 LDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQTLVGDQNRLRQILLNFLNNA 650 Query: 380 VKFTAIGGRV--HVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +KFT G V T G T +S+ D G GIA + + F Q +I+ Sbjct: 651 LKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQARLFKRFTQVDGSIRREFG 710 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGL I++ ++ GG + S EG Sbjct: 711 GTGLGLAISKKLIELMGGAIGVVSAPGEGSTFWF 744 >gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 944 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 16/238 (6%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTP+NAI+G + ++ + E ++++ I +S + LL L+ Sbjct: 267 NQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRAL----TEEQRDFVATIRQSSEALLTLL 322 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-AD 364 N++LD S+IEAGR+E L V + ++ +RA EK +++ + P L + D Sbjct: 323 NDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGD 382 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--------GRGQYISIKDNGPGIAEGE 416 +RQV+LNL+ NA+KFT GG V V+V + S++D G GI + Sbjct: 383 ASRLRQVLLNLVGNALKFTEHGGAV-VSVEGLALGGTEGAADWELTFSVQDTGLGIPDDR 441 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAIL 472 + F Q ++ G GLGL I++ ++ GG + S+ +G L Sbjct: 442 RTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499 >gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] Length = 2002 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 13/358 (3%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 P L L+ L L L ++D A + Sbjct: 1637 PNGAVFLFDEGLTYTLAAGELLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALE 1696 Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDL-----IAELEVAKSLSDETRKRAEEENLA 248 + + +V L L I E + +K AEE N Sbjct: 1697 GEQTDRRIGVGGRTLRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRM 1756 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET------YKEYIGDIHRSGQHLL 302 KS LA+MSHE+RTPL +ILGF+E+IE E E+ G I +SGQ L+ Sbjct: 1757 KSSLLANMSHEIRTPLTSILGFAEMIEEEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLM 1816 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 + + +L+LSR+EAG +L+ + L + RE L+ +A+ + + + + Sbjct: 1817 DTLTGVLNLSRLEAGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQ 1876 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 AD G++ V+ NL+SNA+K+T G + + V I ++D+G G+ +I + Sbjct: 1877 ADGGGVQIVLRNLVSNAIKYT-DDGEIRLRVYR-ENGSAMIEVEDSGIGMDPEKIEDLFK 1934 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q S + +G GLGL + + + G + ++ +G + LP Sbjct: 1935 PFRQASEGMAREYEGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEESRET 1992 >gi|125972808|ref|YP_001036718.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004998|ref|ZP_05429970.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281417007|ref|ZP_06248027.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125713033|gb|ABN51525.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991067|gb|EEU01177.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281408409|gb|EFB38667.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316940955|gb|ADU74989.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 424 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIEL--ETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLA++SHELRTP+N + +++I L+ E + I ++ LL L+N Sbjct: 163 KSIFLANISHELRTPINILYSTTQIINSYLNEDKVLDREKIRSKIAMQQQNCYRLLRLVN 222 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++D+++I++G +EL S +++++V +++ A+ K + + D + D+ Sbjct: 223 NLIDITKIDSGYFELKFSRCNIVEVVENITLLVVEYAKNKGVSLIFDTDVEEKIISCDQN 282 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 M ++ILNLLSNA+KFT GG + V V G+ IS+KD G GI E ++ + F Q Sbjct: 283 AMERIILNLLSNAIKFTPRGGSIKVEVK-DCGKTVAISVKDTGIGIQEDKLEMIFERFKQ 341 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP---- 482 + +G G+GL + +S++ HGG+ ++S+ G E LP P Sbjct: 342 VDNLLTRKNEGSGIGLSLVKSLVELHGGKISVKSEYNRGSEFTVELPADLENGENPSMDA 401 Query: 483 ---EDNHESTQYKCY 494 ++ +E+ Q+ + Sbjct: 402 ADRKEENENKQHNVH 416 >gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp. SN2] Length = 929 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 9/246 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 K E + AKS FLA MSHE+RTP+NAI+G +++ + + NE K Sbjct: 400 KQKRELRELALNLQNATDAKSEFLARMSHEIRTPVNAIVGLTKLTQKSVV----NEEQKT 455 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I +S Q LL +IN++LD S+IEAG+ + L +V + I + + A+EK IE Sbjct: 456 NLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIESEVFELDKLVEQVIRLHGINAKEKRIE 515 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISI 405 + Q + + V D + QV+ NLLSNA+KFT G V V+V S+ Sbjct: 516 LLQYVARDVPLQVSGDALRIEQVLNNLLSNAIKFTDE-GMVFVSVNKKYSEHGVLLEFSV 574 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 KD G G++ +I ++ +F Q +I G GLGL I + +++ GG+ + SKL +G Sbjct: 575 KDTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSLMGGEIWVESKLGQG 634 Query: 466 VEVIAI 471 Sbjct: 635 ATFFFT 640 >gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 925 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 14/264 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E R RAE + AK FL+ MSHE+RTP+NAI+G SE++ E + Sbjct: 383 ITERKRMEEDLREARDRAESSSEAKMAFLSHMSHEIRTPMNAIVGLSELLLEEC----PH 438 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + +E + I + L+ L+ +ILDLS+IEAGR EL L + R +L + A+ Sbjct: 439 DPQREQLRLIREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAK 498 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 K + + PS D +RQV+ NL+ NAVKFT GRVHVT G G Sbjct: 499 RKGLVFSWDVAPSAQGFFLGDSFRLRQVLWNLVGNAVKFTER-GRVHVTAWGEQGEGGAR 557 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + ++D G GI + + F QG + G GLGL I++ ++ GG+ L+ Sbjct: 558 KVHFRVQDTGIGILPVNLERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGEILVA 617 Query: 460 SKLREGVEVIAILPNTRVLNFIPE 483 S+ G L VL+ PE Sbjct: 618 SEPGAGSVFSFSL----VLSPAPE 637 >gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 423 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 137/270 (50%), Gaps = 12/270 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L E + + +E + K+ F+A+MSHE+RTPLNAI+GF+ ++ T N Sbjct: 163 LNDITEQRQDQL--ALMKVQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETT----N 216 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +EY I+++ LL IN+ILDLS+IE+GR + S + L DI +E ++ L+ Sbjct: 217 ASEQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKM 276 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 ++ + +W D + QV+LNLLSNA+KFT+ G + + + Sbjct: 277 TSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSK-GFISL-FYEVEDMFVRV 334 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI+E ++ +V F + QG GLGLPI + I+ GG+ +RS+L Sbjct: 335 SVMDTGIGISEEKLESVFERFVKLDD----FYQGAGLGLPICKMIVEQLGGEIGVRSELG 390 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +G LP + E + S +C Sbjct: 391 KGSTFWFTLPLVVTDKAVVEKDDPSVLSEC 420 >gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1018 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 13/269 (4%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A ++ AE N+AKS FLA+MSHE+RTP+N ++G E+++ + ++ Sbjct: 488 AFEALTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDN----DQRDL 543 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + SG LL +++++LD S+IEAGR EL + + L IV + + A K++ + Sbjct: 544 VSTTRESGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTL 603 Query: 351 FQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYI---SI 405 +DP L V AD +RQ++ NL NAVKFTA G +H+ G T G+G+ I + Sbjct: 604 SAFVDPGLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRV 663 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI + F Q + G GLGL I + ++ G S+ G Sbjct: 664 ADTGIGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVG 723 Query: 466 VEVIAILPNTRVLNFIPEDNH---ESTQY 491 LP V +P + ++T + Sbjct: 724 SSFWCRLPL-PVAESVPPETPIGEQTTDF 751 >gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1287 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 27/287 (9%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + ++ ++ E+ +LI L+ E N K FLA +SHELR+P Sbjct: 858 QKGMMQAVCDQIAIAMERVELINSLQRQTEQLTEA-------NRMKDEFLAILSHELRSP 910 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LNAILG++++++ + + I R+ + LI ++LD+SR+ G+ L+ Sbjct: 911 LNAILGWAQLLQARRLSEAQTAKG---LETIERNAKAQTQLIEDLLDISRMIRGKLRLNV 967 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLS-SVWADEKGMRQVILNLLSN 378 +LI I+ I + L AQ K I++ ++ +L V D + ++QVI NLL+N Sbjct: 968 RTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQQVIWNLLTN 1027 Query: 379 AVKFTAIGGRVHVTVGWTSG---------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 A+KFT GG+V V + G I + D G GI +P V F Q Sbjct: 1028 AIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYVFDRFRQADS 1087 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR--EGVEVIAILPN 474 +I + G+GLGL I + ++ HGG + S +G LP Sbjct: 1088 SITRSHGGLGLGLAIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1133 >gi|116199517|ref|XP_001225570.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51] gi|88179193|gb|EAQ86661.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51] Length = 2325 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 16/246 (6%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE+ AKS FLA++SHELRTPLN ++G SE++ + N+ E I S L Sbjct: 1820 AEDATKAKSIFLANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSADLL 1875 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQKIDPS 357 L +IN+ILD SR+EA + +L A + ++VRE + + + + +KN++I Q I+ Sbjct: 1876 LTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLP 1935 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIA 413 ++ D + QV+ NL+ N++KFT G + + +KD G GI+ Sbjct: 1936 PMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSITIGARIDKETKENATLTFWVKDTGIGIS 1994 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIA 470 ++ + F Q + G GLGL I +S++ G + S+ G Sbjct: 1995 AQQLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMQGTIRLESQEHLGTTAWFTV 2054 Query: 471 ILPNTR 476 R Sbjct: 2055 TFDKAR 2060 >gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1299 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 12/387 (3%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + + + ++ + T ++P + ++ Sbjct: 201 ARALAQEPRDLPFVMIYMMEESGNQARLAAFTGIDPTHPAVQQSLSIGRDSMWPLAEALR 260 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 L +L + SF + + L + + + ++ L + Sbjct: 261 LQAPVLVRDLRRSFGVDFPSGG---WRQPPKQAVVLPILASGEVGESGFVIAGLNPFRLY 317 Query: 214 ILSCQAEKDDLIAELEVA--KSLSDET-RKRAEEE---NLAKSRFLASMSHELRTPLNAI 267 S + + ++ A L+ E R+RAE + AK+ F +++SHE RTPL + Sbjct: 318 DESYARFLNLVSGQIAAAAGNGLAYEAERRRAEALAEIDRAKTTFFSNISHEFRTPLTLM 377 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 L E + L E + IHR+G LL L+N +LD SRIEAGR S + Sbjct: 378 LSPLEDMLARADAGLGAEQLA-MLNLIHRNGIRLLKLVNTLLDFSRIEAGRMTASFEPVD 436 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L + E + + + + + P V+ D +++LNLLSNA KFT GG Sbjct: 437 LAALTSELVSNFRSATDRAGLRLAIEAAPLPQPVYVDRDLWEKIVLNLLSNAFKFTFDGG 496 Query: 388 RVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + VT+G + R ++ D G GI E+P + F + + A + +G G+GL + Q Sbjct: 497 -ISVTIGIAADMRHAEFAVHDTGTGIPPDELPHLFERFRRVAGARGRSYEGSGIGLALVQ 555 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 ++ HGG+ S+L G LP Sbjct: 556 ELVKLHGGEITADSELGRGSVFTVRLP 582 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 31/357 (8%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF----FPVVVALSTQAIMS 181 L + + + L+ + ++L P P + Sbjct: 799 LRTIFEASYTFQALLSGEGTLLDANATSLDAIAAPLDKVAGRPFWDTPWFTGTPGMPELI 858 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 ++DI + G +A + ++ + E L A + A L++ R++ Sbjct: 859 KSLVDIVIHGEVARREIQLDLPVGGRRWFDFQMRPVRDEAGQLAAIVPEAVELTE--RRQ 916 Query: 242 AEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 AEE A + ++H+ L I ++++ + P E + Y+ I Sbjct: 917 AEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRQLPP---ERMRRYVDAIS 973 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + L ++L +R R + + + MLQ + I + Sbjct: 974 DTADRAAKLTGQLLAFAR----RTPMERQVFDAARHLEQIAEMLQTVLGAPAV-IALDLR 1028 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYISIKDN 408 V D ++NL++NA G + + G I++ D Sbjct: 1029 ARPLPVDVDINQFDTALVNLVANARDAMDGRGVLTIRGERVDHGGPTAPEQFVSIAVSDT 1088 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 G GI ++ + F K +G GLGL + GG+ L S++ G Sbjct: 1089 GCGIPPEQLDRIFEPFF----TTKGVGRGTGLGLSQVYGFVHQSGGRVLTDSEVGRG 1141 >gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 445 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 3/227 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS + + +SHELRT L ILG S++++ E GPL NE KEY+ I SG+HLL L+N+ Sbjct: 212 KSDYFSHVSHELRTTLAGILGLSKMLKQELYGPL-NEKQKEYVNGIRVSGEHLLALVNDF 270 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS+IEA + EL +++ DI I ++Q +A E+NI+I K+ + D++ + Sbjct: 271 LDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQNIDIILKVSEQVDFCTVDQRKI 330 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +Q+++NL+SNA+KFT G V + V + D G GI E + + F Q Sbjct: 331 KQILINLMSNAIKFTEE-GSVTLQVEKV-DNWLKFCVIDTGIGIKEEDQKKLFQPFQQIH 388 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +G GLGL +++ + H G+ + S+ +G LP Sbjct: 389 SKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGSCFTLELPLK 435 >gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 581 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 ++ F+A++SHEL+TPL +I GF E + ++ Y ++G I + + LINE+ Sbjct: 358 RTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKY--FLGIIKQETDRMTRLINEL 415 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L S IE E+ + + +I+++ + + +LQ EK ++ K+ +++ + ++E + Sbjct: 416 LYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLPENIAHILSNEDSL 475 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+++NLL NA+K+T GG + + V T I++ DNG GIAE E+ + F + Sbjct: 476 LQIMINLLDNAIKYTPEGGTISIMVEETLEN-VLITVADNGIGIAEDELDRIFERFYRVD 534 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 A G GLGL + + ++ G + S+L +G +P Sbjct: 535 RARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIPK 580 >gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 591 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 L LSRIE + + + D++ + + + A EKNI++ + + Sbjct: 424 LALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTVPPVIIETNRDQ 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEVTDNGIGIPTKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus vaginalis ATCC 49540] gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus vaginalis ATCC 49540] Length = 622 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + F++++SHELRTPL ++ + E + + E +++ + + ++ Sbjct: 372 QKEEQERKEFVSNVSHELRTPLTSVKSYVEALSDGAW--QDKEIAPQFLKVVQDETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDP 356 +IN++L LSR++AG +L+ +++ ++ + + +++ I + Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKKYTIERFFTK 489 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 V D QVI N+++NA+K++ GG + + T +SI D G GI + Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITARLLETHNH-VIMSISDQGLGIPRKD 548 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 549 LSHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGSTFYISLP 605 >gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4] Length = 1410 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 150/257 (58%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + ++ AE N K+ FLA +SHE+RTPLNAI+GF++++ E GP+ Sbjct: 1152 RDITQWKRTEEELRSAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPI 1211 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y EY DI RSG+H+L+++N++LD+S+IEAG +L A+ L + V E + ++Q + Sbjct: 1212 GHGRYAEYAADIGRSGRHVLDIVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQ 1271 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + S+ +V AD + ++Q++LN+LSNA++FT GG++ V+ + Sbjct: 1272 ANGQRVIIRTALSQSVPNVVADMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVT 1331 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + I+D G G+ E+ + F Q S G GLGLP+ ++++ + F I+S Sbjct: 1332 LRIRDTGIGMTRAELEQAMKPFRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQST 1391 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1392 PNEGTLVEITFPSPRVL 1408 >gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1334 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 95/410 (23%), Positives = 161/410 (39%), Gaps = 27/410 (6%) Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 ++ +G+ R + V ++ L L I +L + + Sbjct: 600 RIAFGRTLVGQAARSRRTITVDELPPDYVTISSGLGHVVPTALVLLPIVVEGQVLGVIEL 659 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL------SFFTYITY 205 ++++ F + FL+ + ++ I++ D L + + Sbjct: 660 ASVTPFTQIHQDFLAQLMETIGVNVNTIVANARTDELLVESQRLTVELQERSAELQTQQE 719 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSH 258 L SN ++ A ++E ++ R+ E + KS FLA+MSH Sbjct: 720 ELQHSNAELEDKAALLAAQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSH 779 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ L + + + EY IH +G LL LIN+ILDLS++EAG+ Sbjct: 780 ELRTPLNS-LLILAQLLAQNPSRNLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGK 838 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++S + L ++ + +K+++ P + + D+ +RQV+ NLLS Sbjct: 839 MDVSPERVELRRLIEYVEATFRPMTMQKSLDFTVTTAPGAPADLLTDDSRLRQVLRNLLS 898 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQ-----------YISIKDNGPGIAEGEIPTVLTSFGQ 426 NAVKFT G V + + ++D G GI E + + +F Q Sbjct: 899 NAVKFTER-GEVRLRIEPAPDDEVPSGVLRGGPVVAFRVQDTGVGIPEQHLEAIFGAFQQ 957 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I + I GG + S +G LP R Sbjct: 958 ADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSVAGQGSTFTLFLPVAR 1007 >gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] Length = 709 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 10/254 (3%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E I + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS ++ Sbjct: 321 ELATDITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAE--- 377 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 +++ + Y+ + + + LLNLI++ILD+S+IEAG EL + + + + RE I Sbjct: 378 --ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTC 435 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + E+ + + V AD+ + QV+ N ++NA+KFT G V ++ Sbjct: 436 SHKKHEEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTK-GSVTLSYRLEDDG 494 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI + + + F + S QG GLGL I QS++ GGQ + Sbjct: 495 LLHFCVTDTGKGIPAEQQHEIFSRFVKLD----SFSQGAGLGLSICQSLVERMGGQIGVN 550 Query: 460 SKLREGVEVIAILP 473 S+ EG P Sbjct: 551 SREGEGSCFWFTHP 564 >gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 1228 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 14/269 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I A+ + R AE NLAKS FLA+M+HELRTPLNA++G + ++ + Sbjct: 554 ITAFRRAEQALSQARTEAETANLAKSDFLANMTHELRTPLNAVIGLARLLTESPLNAW-- 611 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y I S Q L LIN+ILDLS++EA + + + SL ++R +L + Sbjct: 612 --QRDYADKIALSAQSLQVLINDILDLSKMEANQLRIEQIPFSLNLLLRTAASVLGVGVG 669 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ-- 401 +K I + + P + ++ D ++Q++LNL+SNA+KFT G + V+V S Sbjct: 670 QKAIAVVLDLAPDVPDALVGDPLRVQQILLNLISNALKFTER-GEIVVSVRCQSMMPVAA 728 Query: 402 ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I+++D G GIA + T+ +F Q + G GLGL I+ ++ GGQ Sbjct: 729 GAPILLQIAVRDTGIGIAVAALETIFNAFIQADASTSRLYGGTGLGLTISNRLVTMMGGQ 788 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPED 484 + S +G E LP T + P+D Sbjct: 789 ISVDSTPGQGSEFRFSLPLTAGVPVRPDD 817 >gi|313672134|ref|YP_004050245.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312938890|gb|ADR18082.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 834 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 140/276 (50%), Gaps = 9/276 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + + + + + D +L+ +E + + EE N+AKS FLA +SHELRTPLN Sbjct: 434 VERDCTERKRIEQQLLDYNEKLKENNRALNELKTKEEEANIAKSNFLAIISHELRTPLNG 493 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +LG E+I + E + E+ I SG+ L LIN+I DL+++E G+ EL E Sbjct: 494 VLGLLELIHK------DPERFNEFFPVILSSGEQLRVLINDISDLTKVEQGKLELVEKRF 547 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 S+ + + E + +++ Q+ N+E+ I+ + D +RQV+ NL++NA+K+T G Sbjct: 548 SISNFINEIVSYAKIKIQDSNLELVVDIEQFEGYLEGDAVRLRQVVYNLINNAIKYTDNG 607 Query: 387 G-RVHVTVGWTSGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 +V + + + + Y + D G GI+ +I + F + + G G+GL Sbjct: 608 FVKVVIRKLFENDKIMRIYFEVTDTGIGISPNDIDNIFKPFKRLDGSYTKKRYGSGIGLY 667 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 I+++I+ + S++ +G + L R + Sbjct: 668 ISKAILNMMNSNINVESEVGKGSKFYFKLDLKRSIP 703 >gi|300865341|ref|ZP_07110152.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300336644|emb|CBN55302.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 945 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 105/405 (25%), Positives = 160/405 (39%), Gaps = 39/405 (9%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFL 165 W WTLL +TI L + F L V Sbjct: 323 WVWIAFWSFSGAAGSWTLLASSYLKKNNFSTVTILYILVAGAGLMGISFIAF-LWGWVIP 381 Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 F P++ + + + H L ++ L + +L Sbjct: 382 VFSPLLALTVSAILTTNHHNYWQLKTANQKLQ-----TANSDLETANNQLEEYSRNLELK 436 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + A+ N AKS FLA+MSHELRTPLN ILG+++++E Sbjct: 437 VTERT--QELEAAKVAADFANHAKSEFLANMSHELRTPLNGILGYAQILERSQALASKE- 493 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 E I IH+ G HLL LIN+ILDLS+IEA + +L + + + + + +++A + Sbjct: 494 --LEGIRIIHQCGDHLLTLINDILDLSKIEARKLDLYPTELRFHNFLISVAEICRIKAVQ 551 Query: 346 KNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHV----TVGWTS 397 K+I+ L ++ADEK +RQV++NL+ NA+KFT GG +V + Sbjct: 552 KSIDFSPPKVSELPLKIYADEKRLRQVLINLIGNAIKFTDSGGVSFKVEILSKSECSLED 611 Query: 398 GR--------------GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 SI+D G G+ ++ + F Q G GLGL Sbjct: 612 NNLWTTETENNQFSAAKIRFSIEDTGIGMTSEQLNKIFLPFEQVGDK-SRMATGTGLGLA 670 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPEDNH 486 I+Q I+ G Q + S+ EG LP V +PE Sbjct: 671 ISQRIVNLMGSQLEVVSQFGEGSIFWFDVELP---VNFTLPEATS 712 >gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 377 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 6/329 (1%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + L+ V++AL I+S ++D + +++T + + S I Sbjct: 43 AWTTSALLTAAAVIMALGLNWILSRIGLIDFTGQIVISTVIVTILVGFPIIIYSQFIIRE 102 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + + L E AE N AKS FLA+MSHELRTPLNAI+GFS++I Sbjct: 103 LKTSRRTLRKMTER----LAWAFDNAERANEAKSNFLANMSHELRTPLNAIIGFSDIIRF 158 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES-AISLIDIVREC 335 + G + N Y++Y DI+ SG HLL++IN+ILDL++I+AG + + S+ + Sbjct: 159 QRFGSVGNSRYQDYAKDINESGIHLLSIINDILDLAKIDAGHGTMEQEAEFSVRSAIDCA 218 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 M++ A+ + I + + + + E+ +RQV++N+LSNA+KFT GG V V Sbjct: 219 ERMVRSLAERQEISLSTAAAETSAYLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEH 278 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 +SI D G G++ E+ LT FGQ A+ G GLGLP+A+++M HGG+ Sbjct: 279 RPNGNLVVSISDTGIGMSPDEVKVALTPFGQSGSALSRKHPGTGLGLPLAKAMMDMHGGR 338 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFIPED 484 ++RS + +G V + P+ RVL + Sbjct: 339 LMVRSMVGKGTTVTLVFPSGRVLRTSEKA 367 >gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 909 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 10/247 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E + +AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + + Sbjct: 531 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 586 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I + + LL LIN+ILDLS+IE+G + +L + E M+Q + ++ Sbjct: 587 EYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITNPDV 646 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E ++ D ++QV +N L+NAVK T G + + I ++D+ Sbjct: 647 EFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCT-KSGYIKMGYSIEREG-IRIYVEDS 704 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E V F + QG GLGL I+++I+ GG+ S G Sbjct: 705 GVGIPEELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTF 760 Query: 469 IAILPNT 475 A +P Sbjct: 761 WAWIPCE 767 >gi|71906644|ref|YP_284231.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71846265|gb|AAZ45761.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 497 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 107/481 (22%), Positives = 185/481 (38%), Gaps = 29/481 (6%) Query: 16 ISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----QNP 70 ++ T D + P D + + R+ + + L+ + + F Sbjct: 1 MTSTLDDILSVAPGITDRNEAVREQRHRYRVRMLSAISISYLIDCLLLSLFFAAGTVPVQ 60 Query: 71 IFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPG 130 + ++ L L L ++ ++ ++ W++ + + W Sbjct: 61 VPALYGLAGLGHVLILSFLHWVGVSDRVRSSQMTEWQMIYAIAVQLFFVVWAPSIATYFL 120 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLA 190 + L + I + AV + F V ++ + V+ S A Sbjct: 121 SIIFIIFGFGALRISLRSAVIMWAMAIVATGAVLVIFRGERVGVAHPSAFESVVILSSFA 180 Query: 191 GMLATALSFFTYITY---HLFKSNVKILSCQAEKDDLIAELE-----------VAKSLSD 236 +L + Y + +FK NV + AE+ + AELE Sbjct: 181 LVLLRCILLGYYASQLRIRMFKKNVNLAEEIAERKCMEAELERHHLHLEELVAQRTRALS 240 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 ++ AE N AK+ FLA+MSHEL TPL+ I+G +E+++ + T + + + Sbjct: 241 IAKEAAETANRAKNTFLATMSHELLTPLSGIMGITELMKRNA----ADATTQNQLLKMGD 296 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + LL++IN IL S++EAGR L +A SL I++ L A EK I + Sbjct: 297 AQNRLLHVINGILQHSKLEAGRLTLECNAFSLSSILKWVSSHLHPLADEKEIALAVADLS 356 Query: 357 --SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS--GRGQ--YISIKDNGP 410 + D + Q++ +NA+KFT GG V V G ++ DNG Sbjct: 357 GWDGVEFFGDSARIGQIVSEFAANAIKFTERGGSVKVACEVVEVPGDAVLCRFAVSDNGI 416 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI+ ++ V SF Q + A G+GLGL I + + GG+ SK G Sbjct: 417 GISPEKLDRVFNSFEQVDGSFSRAYGGLGLGLAICKQLAELMGGKVGAVSKPGVGSTFWF 476 Query: 471 I 471 Sbjct: 477 T 477 >gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 419 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL + L D R+ A + KS F+A+MSHE+RTPLNAI+GFS ++ + Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGLMA----TATSE 222 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I + + LL L+N+I DLS+I+AG S D++RE + +R Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLN 282 Query: 345 EKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E + + + + ++++ + QV+ NLL NA+KFT G + Y Sbjct: 283 ENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGTDEVYF 341 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + E + + F + QG GLGL ++Q+I+ N GG+F + S++ Sbjct: 342 YVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNLGGRFGVESEVG 397 Query: 464 EGVEVIAILPN 474 +G + ILP Sbjct: 398 KGSTFLFILPL 408 >gi|295705390|ref|YP_003598465.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803049|gb|ADF40115.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 460 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 16/311 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + Q + L M+ ++ F T +L K VK+ + +E+ Sbjct: 155 IQLQFGEMRIFFSVILLLMIVLSILFVVISTRYLVKPIVKLTEATKQVAKGKYNVELYVK 214 Query: 234 LSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 DE K E+ + F++++SHE+++PL +I GFS+ + L+ Sbjct: 215 RRDEIGALASHFSEMAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRS---ANLS 271 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E EY+ I + + +L ++L L+ ++ + +S + +++ + Sbjct: 272 DEQRNEYLSIIEEESRRMSSLSKQLLTLASLDKESEHIEKSTFDVAAQIKQVL--FMTEW 329 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + E+ ++D + + D+K + QV NL++N+VKFT GG + + +G ++ Sbjct: 330 SWREKELAIEMDLPSTMISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRIGM-EDTHCHV 388 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +D G GI++ +P + F + A E GLGL I + I+ HGG + S+ Sbjct: 389 EFQDTGIGISKESLPHIFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKG 448 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 449 KGSTFHVYLPK 459 >gi|225569382|ref|ZP_03778407.1| hypothetical protein CLOHYLEM_05466 [Clostridium hylemonae DSM 15053] gi|225161590|gb|EEG74209.1| hypothetical protein CLOHYLEM_05466 [Clostridium hylemonae DSM 15053] Length = 436 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 11/320 (3%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILS 216 + + V + M++ VL I + + + + + Sbjct: 124 YYALRLPDGTVLRVSKTIDNAFYMAVQVLPIMGGLAAVMLFVAWMLSKWQVSRLIRPVNE 183 Query: 217 CQAEKDDLIAELEVAKSLSD----ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 E E + L + + +++ N+ K F A++SHEL+TPL +I G++E Sbjct: 184 LNLEHPLENEVYEELRPLLESIDRQNKEKDAVANMRK-EFSANVSHELKTPLTSISGYAE 242 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ + P E + I+ L+ L+ +I+ LSR++ G+ E+ + + L ++ Sbjct: 243 IMKNGLVKP---EDIVVFSERIYNEASRLITLVEDIIKLSRLDEGKVEMEKEEVDLYELT 299 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 RE L +A +N+ I +P + + ++I N+ NAVK+ GG V V Sbjct: 300 REICSRLSPQASSRNVHIEVTGEP--VVYRGIRQILDEMIYNICENAVKYNRRGGSVSVW 357 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 VG T + I + D G GI + E + F + + G GLGL I + H Sbjct: 358 VGSTLKGRKVI-VTDTGIGIPKEEQERIFERFYRVDKSHSKESGGTGLGLSIVKHGAMIH 416 Query: 453 GGQFLIRSKLREGVEVIAIL 472 G + S+ +G ++ Sbjct: 417 GADIRVESEPGKGTKMELTF 436 >gi|144901059|emb|CAM77923.1| Sensor histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 896 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 13/369 (3%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 W ++ ++ + + + ++ + A ++ + +T+A+ Sbjct: 283 WGMVVKIDVSETLASVERLRALGWWIGSAAVLFGLLAAIFIARAIAAPLKDLQQATEALS 342 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 I N Q+ L +E + Sbjct: 343 QGTFQPPLAVDGSVE-------IADLAHSFNHMAREIQSYHHGLERMVEDRTKELRAAKD 395 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE AK+ FLA MSHELRTP+N I+G +E++ N+ + + G I +SG+ Sbjct: 396 TAEAATRAKTDFLAVMSHELRTPMNGIIGMAELLRRRL---ENDGEAQRWAGTIKQSGET 452 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+N+ILD+SRIE G A + + + + + +++L A EK + + P L Sbjct: 453 LTVLLNDILDISRIEGGHLTFERRAFAPLRLAEDLVALMRLPAAEKGLSLRLDAAPDLPD 512 Query: 361 V-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + AD +RQV+LNLL NA+KFT G + +++ ++ S+ D G G+A + Sbjct: 513 LALADPARLRQVLLNLLGNAIKFT-DHGDIVLSLAMSTPHSLRFSVADTGIGVAAADRDR 571 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q + G GLGL I + ++ GG ++ G ++ LP T + Sbjct: 572 LFEPFFQADSSASRRHGGAGLGLAICKRLLDGMGGAISYEARPGGGSLLVVDLPFTAATD 631 Query: 480 FIPEDNHES 488 PED+ ES Sbjct: 632 T-PEDDDES 639 >gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701] gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701] Length = 549 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 11/323 (3%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 P + V+++ + + ++ L + +D L Sbjct: 70 ARLGPGSLLWDLTPTPPRRVVEVKWSPVNLKPDPSLVFVFRDLTEITRAQDQITKARDTL 129 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 ++ R A A +FL+++SHE+RTPLNA++G S+++ ++ + Sbjct: 130 EQDVAARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDTSL----D 185 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + I+ S + LL LIN+ILDLS+IEA + ++S SL +V +C M+ + Sbjct: 186 GQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVR 245 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K +E+ ++ D +RQ++LNLL+NA+KFT G V V +GW I Sbjct: 246 AKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFT-SHGSVDVKIGWRPLTSSAI 304 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSI-AIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + D G GI+E + + F Q A S G GLGL I + GG Sbjct: 305 ELDLVVADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEA 364 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S+L +G LP R Sbjct: 365 VSQLGQGSRFHVRLPLKRSEPEA 387 >gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 10/268 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + K L E + + A + +++AE + AKS FLA+MSHE+RTP++ IL Sbjct: 594 QLDAKQLMLLLEGLWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGIL 653 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++V+ + + +YI + S LL +IN+ILDLS+IEA + +L +L Sbjct: 654 GMADVLLTTRL----EDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNL 709 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 +R + L+ +K + + +DP L + D + Q++ NLLSNA+KFT+ GG Sbjct: 710 DAALRAVVDPFVLQTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGG 769 Query: 388 RVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V + V ++D G GI + + SF Q + G GLGL Sbjct: 770 -VTLRVVPVQVSGVDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLA 828 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+++ + GG+ + S +G Sbjct: 829 ISKNFVEMMGGRIWVESIEGQGSLFAFT 856 >gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] Length = 541 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 117/460 (25%), Positives = 186/460 (40%), Gaps = 39/460 (8%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 + + + + W + +W ++ A L + + W + L Sbjct: 52 PVAVLAVALPFEAWWIGASRRAALWGAVSAIAAIALQPLAAAFLPFAGAQIAAWHWLVPL 111 Query: 111 LVGQIAIGLCWTL---LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 I + + I + L +A L + Sbjct: 112 AWALTLIPRLSAVGDSAGATDTLDAGGRLEDIIDAVILRVARHGEVLDASDKARTLLK-- 169 Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 P + T +H+ D +LA M A S + L ++ + Sbjct: 170 LPPELLSGTGFFDRVHLSDRVSYLSALADMRDGAASRRLELRVRLPQNGNGQNDTRQSDS 229 Query: 223 DLIAEL------------EVA-------KSLSDETRKRAE---------EENLAKSRFLA 254 L+A+ E + + + R R E +AK RFLA Sbjct: 230 RLMADNYRPFLLELLRGEEQSDVFTLVLRENDETARLREELAQANETAAAAEVAKGRFLA 289 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +SHELRTPLNAI+GFS+++ E G + KEY+ + SGQHLL ++ ILD+SRI Sbjct: 290 VVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSRI 349 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 E+G Y ++ V C M++L+AQ KNI++ +I P + AD + ++Q+++N Sbjct: 350 ESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQMLIN 409 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+SNA+KFT GG V V G + ++D G GIAE + + F Q Sbjct: 410 LVSNAIKFTPDGGDVVVGAKRI-GSRLHFWVRDTGIGIAEEDFANLGKPFTQIQNDYTRR 468 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL + + ++A H G I S EG V LP Sbjct: 469 FEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 508 >gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 615 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 138/265 (52%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G L+ +++ Sbjct: 383 AVQLL-DFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ E + + A+ K I I + + D + ++ILNLLSNA+KFT GG + Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V + S Y+ IKD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNIK-DSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I S+L +G E I LP Sbjct: 561 EMHNGTVTINSELGKGTEFIIKLPA 585 >gi|228951780|ref|ZP_04113879.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807902|gb|EEM54422.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 468 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] Length = 893 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 7/237 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N ILG +++ + N +EY+ + S Q LL++I++I Sbjct: 269 KSAFLANMSHEIRTPMNGILGMTQLCLDTDL----NSEQREYLTLVMSSAQSLLHIIDDI 324 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S+IEAG+ L E ++L ++ + L A EK IE+ ++D + + D Sbjct: 325 LDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPQTLRVDVVR 384 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 +RQV+ NLLSNA+KFT G + + V ++D+G GI + + +F Q Sbjct: 385 LRQVLTNLLSNALKFTHQ-GEILLAVAPGPQPGEWRFRVRDSGIGIPPEKQQVIFEAFSQ 443 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 + G GLGL I+ ++A GG + S+ +G E LP PE Sbjct: 444 ADTSTTRRYGGTGLGLTISARLVAMMGGLLTVASEANQGSEFSFTLPLQSAAQATPE 500 >gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 523 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 11/292 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 100 FWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 159 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 160 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 214 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 LS +SL ++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 215 VSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLS 274 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + V S +S+ D G GIA I + F + + +G Sbjct: 275 NAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEG 331 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 GLGL +++S++ G +++ EG I LP VL P T Sbjct: 332 TGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL--VLVHAPTAPLPQT 381 >gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1353 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 10/246 (4%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + + AE N AKS FLA+MSHE+RTP+NA++G S ++ + N+ ++ + Sbjct: 626 AELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLT 681 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + +G+ LL +IN+ILD+++IEAG L + S ++ E + +AQEK + Sbjct: 682 KLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSV 741 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407 + SL + D + Q+++NL+ NA+KFT++GG V VTV S++D Sbjct: 742 NVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG-VDVTVSREDDHADTCCLRFSVQD 800 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + + F Q + G GLGL + + + GG+ + S+L G E Sbjct: 801 TGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSE 860 Query: 468 VIAILP 473 LP Sbjct: 861 FWVELP 866 >gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 608 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 6/238 (2%) Query: 246 NLAK--SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 NL K F+AS+SHELRTPL I G++E + M E ++ I + + L Sbjct: 359 NLEKIRRDFVASVSHELRTPLTVITGYTETLLDGAM--HEPEHATAFLQTILLATEQLTA 416 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDLSRIE+G+ E + SA+ L +V++ + +L+ +K I + I L +V+A Sbjct: 417 LVNDVLDLSRIESGQIEYTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYA 476 Query: 364 DEKGMRQVILNLLSNAVKFTAI-GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D + + V+ NLL NA+K+ G++ +T + S + I+DNG GIA+ ++ + Sbjct: 477 DPRYLDIVVRNLLDNAIKYVDDQNGKIRITA-FKSDDHLRLEIEDNGIGIAKSDLGRIFE 535 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A G GLGL I + I+ H G +RS++ G +L V Sbjct: 536 RFYRVDKARSRERGGTGLGLAIVKHIVMAHKGNIDVRSRVNLGSVFTLMLRTEWVDEE 593 >gi|53713096|ref|YP_099088.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215961|dbj|BAD48554.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 639 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 9/253 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L +LE ++ E + RAEE N KS FLA+MS+E+RTPLNAI+GFS+V+ G Sbjct: 395 RLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSYEIRTPLNAIVGFSDVLAS---GGS 451 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E + Y I + LL LIN+ILDLSR+EA + L+ ++ + R+ + +++ Sbjct: 452 SEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMS 511 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 +E + + D + ++QV++NLL+NA KFT G + + Sbjct: 512 RRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKEKNRV 570 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++ D G GI + + V F + QG GLGL I + + GG I Sbjct: 571 LFAVADTGCGIPKEKQKQVFERFEKL----NEYAQGTGLGLSICKLTVDKWGGDIWIDPD 626 Query: 462 LREGVEVIAILPN 474 +G + P Sbjct: 627 YEDGARFVVSHPL 639 >gi|323694521|ref|ZP_08108689.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum WAL-14673] gi|323501435|gb|EGB17329.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum WAL-14673] Length = 1312 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 9/286 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 K++ + + + + + E + A+ N AKS FLA+MSH++RTP+NAI+G +E Sbjct: 901 KVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTE 960 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + + E E I S HL+++IN+ILD+SRIE+G+ E+ + S + Sbjct: 961 LALSDL---SDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEH 1017 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV--- 389 ++ + + A+ K + +D D + +V+ NLLSNA+KFT GGRV Sbjct: 1018 QKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYS 1077 Query: 390 --HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + I++ D G G+ E + F + + +G GLG+ I +S Sbjct: 1078 FAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKS 1137 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHESTQYK 492 + GG + S+ G + I +P +P+ + + Sbjct: 1138 TVELSGGSIEVESEPGRGSKFIVKIPIRLADEQEVPKKEPPKPEIQ 1183 >gi|323485533|ref|ZP_08090879.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum WAL-14163] gi|323401181|gb|EGA93533.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum WAL-14163] Length = 1312 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 9/286 (3%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 K++ + + + + + E + A+ N AKS FLA+MSH++RTP+NAI+G +E Sbjct: 901 KVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTE 960 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + + + E E I S HL+++IN+ILD+SRIE+G+ E+ + S + Sbjct: 961 LALSDL---SDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEH 1017 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV--- 389 ++ + + A+ K + +D D + +V+ NLLSNA+KFT GGRV Sbjct: 1018 QKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYS 1077 Query: 390 --HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + I++ D G G+ E + F + + +G GLG+ I +S Sbjct: 1078 FAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKS 1137 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRV-LNFIPEDNHESTQYK 492 + GG + S+ G + I +P +P+ + + Sbjct: 1138 TVELSGGSIEVESEPGRGSKFIVKIPIRLADEQEVPKKEPPKPEIQ 1183 >gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 478 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL-----EVAKSLSDETRKRAE 243 L + AL+ +I L K + K ++E +E ++ + Sbjct: 176 LGLSVVLALAMGAWIARPLQKMQKEAAQLAEGKAVGVSEEGPQEVRELAHSLNEMMRKVQ 235 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 A+ F+A++SH+L+TPL AI GF++ I + ET + I+ + Sbjct: 236 AGQRAQRDFIANVSHDLKTPLTAIQGFAQAILDG--TAQSPETLRNAATVIYNEASRMYR 293 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ ++L L+R +AG +L + D++RE + AQ+ + + + D SL ++A Sbjct: 294 LVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLE-DASLPVLFA 352 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + + Q + NL+ NA+K+T GG + + G + ++D G GI+ E + Sbjct: 353 DGERLMQALANLMDNALKYTPAGGTIVLR-GKVEEGHLLLEVQDTGKGISPEEQTRIFER 411 Query: 424 FGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F +G+ + EQ GLGLPI + I+ HGG+ + S++ +G +LP Sbjct: 412 FYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYSEVGKGSCFTLVLPLQ 464 >gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 781 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I ++ + R +AE+ + K+ FLA+MSHE+RTPLNAI+GFS ++ N Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM----TIADNA 453 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I+++ + LL LIN+ILDL++IEAG E + L ++ R M + R Sbjct: 454 EDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRV- 512 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + + + D+ + QV+ NL++NA+KFT G + Sbjct: 513 QTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFK-GEIRFGFEVREE-YIDFY 570 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GI+E +I + F + + QG GLGL I + I+ GG+ SKL E Sbjct: 571 VKDTGMGISEEKIKMIFERFVKL----NTFVQGTGLGLAICRVIVEKLGGEITAESKLNE 626 Query: 465 GVEVIAILP 473 G +P Sbjct: 627 GSTFRFTIP 635 >gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 710 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 137/253 (54%), Gaps = 10/253 (3%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 A E K FLA ++HE+RTPLNAI+GFS++++ + + + KE + I S + L Sbjct: 326 ATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRL----DGQEKESVDAIQSSSRIL 381 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSS 360 L L+N++LD S++E+G+ L + +D V E + ++++ A EKNIEI KI + Sbjct: 382 LTLVNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVC 441 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGE 416 + DE ++QV++NLLSNA+KFT G+V V GQ I +KD+G GIA Sbjct: 442 LLGDEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEH 501 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F Q A + + G GLGL I + I+ HGG+ + S + +G E +P T Sbjct: 502 LKEIFEDFKQIGAA-SAGKPGTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIPMTV 560 Query: 477 VLNFIPEDNHEST 489 ST Sbjct: 561 AEKASAPPQVRST 573 >gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 301] gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 301] Length = 949 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 694 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 139/326 (42%), Gaps = 14/326 (4%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLI 225 + P+ A + D A +L A+ + L S + Sbjct: 237 ARLPLHAADGKVVGVIGWTPDRPGAALLVDAVPMLAALVTLLLASVAFGGMRVYRLLRDL 296 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A E ++ D T AE N AKS+FLA+MSHELRTPLN I+ +E++ + Sbjct: 297 AHNE---AVLDRTLAEAETANAAKSQFLANMSHELRTPLNGIIAMTELLRDH----QTDS 349 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 +E I SG L ++N+ILD+++IEAG + + L D+++ + A Sbjct: 350 RGREMAATIISSGHTLEYVVNDILDVAKIEAGLLQFEAAPFDLDDLLKAATQLHGAAAAA 409 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K I + I S V+ D + QVI NL+SNAVKFT GG V VT R +S Sbjct: 410 KGITLRLTIHDDASGVYRGDRTRVSQVISNLISNAVKFTETGG-VQVTARRHGDRELCLS 468 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G G + F Q +++ G GLGL I S+ GG+ +RS + Sbjct: 469 VSDTGVGFDRATAARLFQRFEQADVSVSRRYGGTGLGLAICASLTEIMGGRVTVRSVPGK 528 Query: 465 GVEV--IAILPN---TRVLNFIPEDN 485 G LP V+ P Sbjct: 529 GSTFFAHLALPRIGNAEVVASEPAAA 554 >gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 131/250 (52%), Gaps = 11/250 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 382 ITQLKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +Y+ I + + LL LI++ILDLS+IEAG +++ ++ + E +Q++A Sbjct: 438 EEKHQYVTIIEENNKLLLQLISDILDLSKIEAGTFDVIPEQVNAQQLCNELFQAMQMKAT 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 ++I + +++ + QV+LN ++NA+KFT+ G + +G S Sbjct: 498 -PQVKILLAPELPELIFTSNKNRLYQVLLNFVTNALKFTSEGSIII--DYRINGNEVRFS 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA + + T F + S G GLGLPI QSI+ GG+ + S+ + Sbjct: 555 VKDTGIGIAPEKQEAIFTRFVKL----NSFIPGTGLGLPICQSIITQLGGKIGVESEPGK 610 Query: 465 GVEVIAILPN 474 G P Sbjct: 611 GSCFWFTHPL 620 >gi|226947584|ref|YP_002802675.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226841756|gb|ACO84422.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 464 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 147/327 (44%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + T + Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + + I +KD G GI + ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKYEEE-YITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] Length = 551 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + E + +AE + AKS F+A++SH+LRTP+N ILG +++ + Sbjct: 155 ITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQE 214 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 I D+ S LL L+ +ILD +R+E G+ EL S +L +V + + Q Sbjct: 215 P----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQ 270 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQ 401 +K I+I D SL S+ ++ +R++ LNL+ NAVKFT G++ VTV + Sbjct: 271 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAML 329 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I +KD G GI + ++ T+ F + + S +G+GLGL I + ++ N GG+ + S Sbjct: 330 KILVKDTGLGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSI 389 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 EG +P P + E+ Sbjct: 390 ENEGSTFTLTIPCEIASLQSPREKEET 416 >gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50] gi|156864697|gb|EDO58128.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50] Length = 583 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 8/261 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + ++ + A ++ FLA+MSHE+RTP+N ILG ++ M Sbjct: 180 ITDQKDTENKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL---TLMADDLQ 236 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y++ + LL LIN+ILD+S++EAG+Y++ E + + E + A Sbjct: 237 ADYRDNLVTAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIKQAIEETVAAQVPLAN 296 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHV-TVGWTSGRGQ 401 K +++ ++ V D + ++QV+ LLSNA+KFT+ G RV + ++ Sbjct: 297 NKGLQLDCSFGNNIPKLVKGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDMEGENKV 356 Query: 402 YIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D G GI+E + + F Q + G GLGL I + I+ GG ++ Sbjct: 357 KIRMAVADTGIGISEANMSKLFIRFSQVDSSDTRRYGGSGLGLVITKQIVELMGGNIQVQ 416 Query: 460 SKLREGVEVIAILPNTRVLNF 480 SK G I +P V Sbjct: 417 SKEDIGSTFIVEVPMKVVKAS 437 >gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28] gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28] Length = 428 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 17/307 (5%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + + L+ +L L + T + K ++ + D++ E+ Sbjct: 126 FIIAGIITFLLTAITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSLTTTRNDEI---GEL 182 Query: 231 AKSLSDETRK----RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 A+S+ + E S FLAS+SHELRTPL + G++++ ++ P E Sbjct: 183 AQSIQTLANDLHYMKTER-----SEFLASVSHELRTPLTYVRGYADIALKDSTPP---EQ 234 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 Y+ I ++ NL+ ++ L+++E + + + L + + +E+ Sbjct: 235 RLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKER 294 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +I++ P+L V DE+ QVI+N+L+NA + + ++++V + I+I+ Sbjct: 295 HIKVSFTCPPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISVT-EEYKHISITIE 352 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI ++P + F + A + G GLGL I + I+ HGG + S++ G Sbjct: 353 DDGEGIPPEDLPHIFDRFYRVDKARTRSTGGTGLGLSIVKEIVELHGGNITVISEVDHGS 412 Query: 467 EVIAILP 473 LP Sbjct: 413 CFTISLP 419 >gi|225388888|ref|ZP_03758612.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme DSM 15981] gi|225045061|gb|EEG55307.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme DSM 15981] Length = 525 Score = 262 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 136/244 (55%), Gaps = 9/244 (3%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++ + A N AK+ FL+SMSH++RTP+NAI+G + VI +G N E + + Sbjct: 1 RALEDAYQAARVANDAKTNFLSSMSHDIRTPMNAIMGMA-VIAQANLG--NPEKLTDCLS 57 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I S +HLL LINE+LD+SRIE+G+ +LS +SL D+V E I + + + +K+ ++F Sbjct: 58 KISTSSRHLLGLINEVLDMSRIESGKIDLSSEMVSLPDLVEEVIGICRPLSNQKHHQLFI 117 Query: 353 KIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIK 406 D V D ++QV++NLLSNAVK+T GG + + + + Sbjct: 118 SADHVRHEKVVTDMNRLQQVLMNLLSNAVKYTPDGGTISLRLRELPSIVPGRGQYEFIVS 177 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 DNG G+ E +P + F + + S QG GLG+ I ++I++ G ++S+L EG Sbjct: 178 DNGIGMPEDFVPHIFEPFTRAEDSRISKIQGTGLGMTITENIVSMMNGTIEVKSQLGEGS 237 Query: 467 EVIA 470 + I Sbjct: 238 QFIF 241 >gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1037 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 104/520 (20%), Positives = 178/520 (34%), Gaps = 58/520 (11%) Query: 3 RSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANI 62 R + + + + L + + D + L + + L Sbjct: 108 RRQAMRALWLQEAENAVAMSLRGDLGPEQIADAAVTRLAEQLRAD----VGAVYRLEGGR 163 Query: 63 GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY-----------VWRIWLL 111 + + + + E R +L Sbjct: 164 LQLTGGMALPSGTPASLSLQEGLAGQVARDERIRHLHGDEAAVLELQTSLGRLPVRERIL 223 Query: 112 VGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + G ++ L + + A +I L A + Sbjct: 224 APINSDGSVVGVIELGR--ARIGDQQGLDDELLERCAETIGMALRASLLRAQLVVLL--- 278 Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 L L + + +L Q+ ++ AELE + Sbjct: 279 ------------EESQRQGEELQAQQEELRVANEELEEQSRSLLQSQSHLEEQQAELEQS 326 Query: 232 KSLSDETRKRAEE---------------------ENLAKSRFLASMSHELRTPLNAILGF 270 +E E + KS FLA+MSHELRTPLN+ L Sbjct: 327 NVQLEERTHELEAQKQALLVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLIL 386 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 ++++ G L E K Y I S LL LIN+ILDLSRIEAG EL++ + + Sbjct: 387 AKLLADNKDGTLTEEQVK-YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDS 445 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ + A++K + + + D + + AD + ++Q++ NLL+NA+KFT G+V Sbjct: 446 VLQRLRETFEPMARQKGLALEIEADALAPTQLVADNQRLQQILKNLLANALKFT-EHGKV 504 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + V + D G GIA ++P + +F Q + + G GLGL I++ + Sbjct: 505 SLHVRAGGNGRVRFDVCDTGIGIAREQLPVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 564 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN--TRVLNFIPEDNHE 487 GG + S+ G I LP +P E Sbjct: 565 ERMGGSIQVDSEPGRGSCFILELPLQGAPASQALPAMATE 604 >gi|119468828|ref|ZP_01611853.1| histidine kinase response regulator hybrid protein [Alteromonadales bacterium TW-7] gi|119447480|gb|EAW28747.1| histidine kinase response regulator hybrid protein [Alteromonadales bacterium TW-7] Length = 734 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 11/270 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELE---VAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 L K + L + + +L LE ++ + A+ N K RFLA+MSHELRTP Sbjct: 150 LGKEVIAQLELRLKNRELTKTLELQNQHNQELEKLKAEADAANDLKGRFLANMSHELRTP 209 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 L+ IL +E + NN E + I S L N++N+ILD S+IEAG+ ++ Sbjct: 210 LHGILNLAEF----GLSDSNNNEKDEALKSILNSATILSNIVNDILDFSKIEAGKLDIEH 265 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKF 382 L +++ I L +A K I++ +D ++ + D + Q++ NL SNA+KF Sbjct: 266 IDFKLSEVINSVIEPLTKQALNKGIKLITSVDKKVAETLKGDPLRISQILNNLCSNAIKF 325 Query: 383 TAIGGR---VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 T G V V + + + D G GI++ + F Q + G G Sbjct: 326 TQAGQVELIVTVESHSLNTQNIAFKVIDTGIGISQAAQVNLFKEFQQADSSTSRKYGGTG 385 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 LGL I + G+ SK EG I Sbjct: 386 LGLSICTKLSKLMNGKISFTSKEGEGSVFI 415 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 155/354 (43%), Gaps = 10/354 (2%) Query: 121 WTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 W L+ + + ++ A+ + ++ +L ++ + + + + Sbjct: 332 WALIVELPEKEAFARITELEKIFGVAMVTAIILVIFTSHLLSNSITAPL--LRLTWAAEK 389 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + + + + +S + + ++D ELE + + + Sbjct: 390 ASGGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKIIKQK 446 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 + + K FLA+ SHELRTPL+ ++G +E + GP+ ++ + + I SG Sbjct: 447 NNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPV-KDSQRRQLEMIINSG 505 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 Q L NL++++LD ++ G ++ AI L VR + + K + I +I +L Sbjct: 506 QRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPANL 565 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V ADE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI ++ Sbjct: 566 PLVDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPSEQLE 623 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + Q + + QG GLGL I++ ++ GG+ + S+ G L Sbjct: 624 HIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 677 >gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] Length = 950 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 7/245 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 452 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGID----S 507 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ + +IV + +K + Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLT 567 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+ + V D ++QVI NLL+NA+KFT G + + + + ++D Sbjct: 568 LYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-YVAQGYLAFRVRDT 625 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+P + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 626 GVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685 Query: 469 IAILP 473 I +P Sbjct: 686 IVRIP 690 >gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1] gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1] Length = 617 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + N E +++ + ++ +IN+ Sbjct: 376 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KNPEIAPKFLEVTQQETSRMIRMIND 433 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDPSLSSV 361 +L LSR++ G ++ ++L D V + + + I +++ V Sbjct: 434 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWV 493 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 494 EIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQ-NQNHVILSISDQGLGIPRKDLGKIF 552 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 553 DRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYEPMTEE 611 >gi|88860288|ref|ZP_01134926.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817486|gb|EAR27303.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 902 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 154/370 (41%), Gaps = 23/370 (6%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 ++ L+ E + ++ ++ L+ +LP V L + + Sbjct: 134 VMGLLVIEYTRSEKNYTLFALMATLSFAMFILTLVVLPIFVNKRIKENTARLENEINLIT 193 Query: 183 HVLDISLAGMLATALSF--FTYITYHLFKSNVKILSCQAEKDD--------LIAELEVAK 232 D L + + L S + S +D L ++ Sbjct: 194 DKKDYHLTVSTDLGIGLNKIAILINQLLNSVKESESLHLVAEDKLHGLQLSLENQIMSRT 253 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++ A++ N K+ FLA+MSHE+RTP+N I+G +++ + Sbjct: 254 QELEKAITSAQQANETKTTFLATMSHEIRTPMNGIIGTIDLLRHTELSGP----QVRLSS 309 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I S LL ++++ILD S+IEAG+ ++ +S+ IV E ++ A + +E+ Sbjct: 310 IIRDSAFSLLGILDDILDFSKIEAGKLKVDLIPLSVQQIVEEVARVMSSIAHKNALELNL 369 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTSG----RGQYI 403 IDP++ + D +RQVI NL SNA+KFT G+V + V + Sbjct: 370 FIDPNIPEGLLGDPIRVRQVIYNLCSNAIKFTNSTNDKQGKVSIDVTLSQKTHDFNTVDF 429 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 I DNG G+ + ++ + F Q +I G GLGL I +S+ GQ + S+ Sbjct: 430 KISDNGRGMTKQQLGRIFQPFSQAEDSITREFGGTGLGLSICKSLTELMYGQIKVTSEPG 489 Query: 464 EGVEVIAILP 473 G E + +P Sbjct: 490 IGSEFLISIP 499 >gi|218885172|ref|YP_002434493.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756126|gb|ACL07025.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 598 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 30/346 (8%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD--- 223 +VV+ + ++ + + + + + + + ++ +AE Sbjct: 98 MPTIVVSGTGVMQDAIEAVRRGAWDFILKPIMDLEVLGHRV-RLAIEQGRLRAENRRYHQ 156 Query: 224 -LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L AE+ V ++ R AE N AK++FLA++SHELRTPLN I+G +E++ + Sbjct: 157 NLAAEVAVRTHELEQARVEAESANRAKTQFLANISHELRTPLNGIIGLTELL----LAAG 212 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E +G + ++G LL+++N +LD+S IEAGR L+E+ +L + V + + +L ++ Sbjct: 213 PAGEQEECLGMVRQAGLDLLSIVNNLLDMSSIEAGRIALNEAPFNLRETVGDLVRVLDVQ 272 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--- 398 A+ KN+ + + P + + D +RQV+ NL+ N +K+T +GG V ++V Sbjct: 273 ARWKNLTLACSVSPDVPDRLVGDAARLRQVLTNLVINGIKYTEVGG-VSLSVELDGALPP 331 Query: 399 ----------------RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G ++++D G GIA + + F + G GLGL Sbjct: 332 VPGAGQGAHAAHAGGPVGLRVTVEDTGVGIASEKWERIFEPFTLAENFLTKKYGGAGLGL 391 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 I++ I GG +RS+ G + + + P S Sbjct: 392 AISREIARMMGGDIAVRSQEGAGSTFVLTMRFALGESVAPRPRDAS 437 >gi|188577310|ref|YP_001914239.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521762|gb|ACD59707.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1191 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402 + +D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 905 QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 L +G + LP V + +P + + + Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSAVRAR 1053 >gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28] Length = 581 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 6/235 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 347 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 404 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + +++ + + A EKNI++ + ++ SV D Sbjct: 405 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 463 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 464 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 522 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 A G GLGL I + ++ N GG+ + S+ G LP ++N + Sbjct: 523 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKKDLINIL 577 >gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 702 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 10/253 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +L + K++ + AE A+S FLA+MSHE+RTP++ + G E + ++ N Sbjct: 286 ITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGMLEALISSSL----N 341 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T E+ +S LLN++N+ILD S+I++G ES +L D + E + M A Sbjct: 342 STQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTIEEQVPMFTRLAH 401 Query: 345 EKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK IE+ + AD+ + Q+++NLL+NA+KFT G+V V T Sbjct: 402 EKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKE-GKVTVETKSTRYGKGRF 460 Query: 404 SIK----DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +K D+G GI+E + + + F Q + + G GLGL I I+ ++GG+ + Sbjct: 461 RVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQIVKHYGGKIEVC 520 Query: 460 SKLREGVEVIAIL 472 S L G I L Sbjct: 521 SDLGVGARFIVTL 533 >gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 873 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 9/317 (2%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 VAL +Q++ S + + + + ++ + L + I + Sbjct: 297 TVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDRRE 356 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + ++++ AKS FLA+MSHE+RTP+NAI+G SE++ N +E Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLEN----ENRREPREL 412 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + +H+S +L+ +IN+ILD S++EAG+ L E L +V C + +A +KN+++ Sbjct: 413 LLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKL 472 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 I ++ + V D+ + Q++LNL+ NAVKFT G V + V + S+ D G Sbjct: 473 LVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESELGFD-FSVTDTG 530 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E + ++ F Q + +G GLGL I++ +++ + G+ + S G Sbjct: 531 IGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGNGSCFS 590 Query: 470 AI--LPNTRVLNFIPED 484 LP + P + Sbjct: 591 FSLQLPKRSQPHSEPVE 607 >gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c] Length = 662 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 11/267 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + KS + +A E+ K D R +AE EN +K RFLA +SHELRTPL + Sbjct: 107 IIKSELSSSRFARAIRYALARREIEKERVD--RLKAEAENRSKDRFLAHLSHELRTPLTS 164 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG++E++ +G + + + +HLL+L+N +LDLS+I A + EL+ S + Sbjct: 165 ILGYTELLMDSKIGQSAQSE----LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEV 220 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 +L ++ + ++ + A +K + + D L + D RQV++NL+SNA+KFT Sbjct: 221 NLDALIADVYALMNIPATDKGLTLSVISDTPLPLKITTDATRFRQVLINLISNAIKFTEQ 280 Query: 386 GGRVHVTVGWTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V + + + S+ D G GI ++ +V F Q + + + G GLGL Sbjct: 281 -GSVTLRLWCEDKPGCEFLHFSVTDTGIGIPANQLNSVFKPFEQVADVVSRRQGGSGLGL 339 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI 469 I ++A GG+ + S EG Sbjct: 340 AICNELVAKMGGEVSLHSTFGEGSCFT 366 >gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101] gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101] Length = 571 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A +SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVADISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + D+ Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTHSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDMNLILVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G+ + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|116619668|ref|YP_821824.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222830|gb|ABJ81539.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 729 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 10/332 (3%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P+ L T+ + +LD A AL L + ++ Q E L Sbjct: 147 MLPLRAPLVTRLTLVK-LLDRLAAQAPPAALQELQQQNRELLATLEELAVRQEELVRLNL 205 Query: 227 ELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 ELE + D+ + KSRFL++MSHE RTPLN+IL + ++ Sbjct: 206 ELEDTNRGVVALYAELDDKADHLRRADEMKSRFLSNMSHEFRTPLNSILALTRLLLDRAE 265 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G L E ++ I +S + L L+N++LDL++++AG+ + + + ++ ML Sbjct: 266 GDLTGEQERQVF-FIRKSAESLYELVNDLLDLAKVQAGKTTVHLAPFDVKNLFGALRGML 324 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + + + + +S V +DE + Q++ N +SNA+KFT G V V V Sbjct: 325 RPLLVNTAVNLVFEEPEGISEVVSDEGKISQILRNFISNALKFT-DHGEVRVFVRREDAD 383 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D G GI + V F Q I+ +G GLGLP+++ + GG + Sbjct: 384 RVIFSVSDTGIGIDPADADRVFEEFTQLESPIQRKVKGTGLGLPLSRKLAELLGGTVSVE 443 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 S G +P ++ +++ Sbjct: 444 SSPGVGSTFSLTIPIGDAVSAAAPAGESASEI 475 Score = 53.0 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 17/113 (15%) Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTV-GWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + + + NA + GGRV ++ G T + I + D G GI ++ ++L Sbjct: 53 TRLATAVSEIARNAYNYGG-GGRVEFSIEGTTVPQLFVIRVADAGRGIP--DLQSILDGR 109 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNT 475 Q G+GLG+ A+ +M +F I S GV V LP Sbjct: 110 YQSET-------GMGLGISRARRLMD----RFEIESPPGGGVTVTMTRMLPLR 151 >gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3] gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3] Length = 617 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 10/238 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + +F++++SHELRTPL ++ + E + + ++ I ++ Sbjct: 371 QKEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDKDIAPQ--FLTVIQNETNRMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK-------NIEIFQKID 355 +IN++L LSR+++G +L+ +++ ++ + + ++ I + Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYFT 488 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QVI N+++NA+K++ GG + + T +SI D G GI Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNH-VILSISDQGLGIPRK 547 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 548 DLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605 >gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] Length = 1426 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 12/271 (4%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ + +A+ D++A K+ ++ AE+ N AKS FL+SMSH++RTP+NA++ Sbjct: 1004 RNQKTVCLVRADVTDMLASERRTKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVM 1063 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + ++ ++ + I + +HLL+LIN+ILD+S+IE + L+ SAI++ Sbjct: 1064 GMTTLAAAHL---DDSARVRDCLDKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAV 1120 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 D++ + M+ +A + + + + + D + Q+++NLLSNA+KFT GG Sbjct: 1121 SDLLSQLNAMIAPQAADNGLSYSARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGG 1180 Query: 388 RVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 RV + V + + D G G++E + V F + +G GLG Sbjct: 1181 RVELRVEEIAPVKAPDAVRYRFIVSDTGVGMSEAFLIHVFEPFTRDRNVT--RVEGTGLG 1238 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 L I + ++ G+ S+ R G L Sbjct: 1239 LSITKGLVDLMEGEITAESQERAGTVFRVEL 1269 >gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1193 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 10/225 (4%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+NA++G + ++ + ++YI IH SGQ LL LIN+ILD Sbjct: 562 FLANMSHEIRTPMNAVIGLAHLLLKGDLSG----KQRDYISRIHGSGQMLLGLINDILDF 617 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQ 370 S+IEAGR L E+ +L D++ +L RAQEK + + ++P + + + D + Q Sbjct: 618 SKIEAGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLRLAQ 677 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQ 426 +++NLL NA+KFTA G + V V G I ++D G G+++ + + +F Q Sbjct: 678 ILINLLGNALKFTAS-GSITVFVRRLPGNTARAELEIDVQDTGVGMSQEQQQVLFQAFSQ 736 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 +I G GLGL I + + G + S+ G Sbjct: 737 ADSSITRKYGGTGLGLTICKRLAQLMRGDIWVTSQSGVGSTFTFT 781 >gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1082 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG------PLNNETYKEYI--- 291 AE E + K+ F++++SHELRTPL ++LGF+++I+ + ++ + Sbjct: 593 AEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKINRAVNQV 652 Query: 292 ----GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 I G L NLIN++LD++++EAG+ E +S+ +V I K Sbjct: 653 ASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATTSLFNNKP 712 Query: 348 IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKD 407 I++ + +L + D + QV +NL+SNAVKFT G V + + +S+KD Sbjct: 713 IKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTET-GNVTLKLMAVKS-AIKVSVKD 770 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + V F Q + + QG GLGLPI Q I+ +HGG + S++ G Sbjct: 771 TGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVESQVGVGST 830 Query: 468 VIAILPN 474 LP Sbjct: 831 FYFTLPL 837 >gi|229177807|ref|ZP_04305180.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W] gi|228605598|gb|EEK63046.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W] Length = 466 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 469 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 15/338 (4%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF------ 199 ++ + I L L ++L + + I + ++ SL ++ + Sbjct: 134 IVGVIIPLLDQHRLMGILYLYVPLASIEDVLKRIQAFLMIGGSLFLLITVFVGRKIAMHF 193 Query: 200 ---FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 ++ ++ + S Q + ++AK+ + A+E + K FLA++ Sbjct: 194 TKPLQHMQQAAYRVSQGDFSAQVNVEAEDEIGQLAKAFNQMAHALAKE-DERKKEFLANV 252 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPL+ + G+SE + + K+Y+ IHR + L+ ++LDL+++E Sbjct: 253 SHELRTPLSYVKGYSEALLDGVIKE--EAQQKKYVRLIHREASRMQRLVRDLLDLAQLE- 309 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 G Y L + S+ +V E I + QEKNI + +D L V D + QV+ N+L Sbjct: 310 GTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLDLDHDLI-VDGDPDRIEQVLQNVL 368 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NA+++T G + + + I D+G G+++ +I + F + + Sbjct: 369 DNALRYTPSFGTISLRA-VNKQPMCELIIADSGCGMSKEDIERLGERFFRADRSRSREHG 427 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G GLG+ I + I+ HGG S+ +G V LP Sbjct: 428 GTGLGIAIVKQIIKLHGGSIRFESEQGKGTTVYMELPL 465 >gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM 16795] gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM 16795] Length = 438 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F+A++SHEL+TP+ +I GF E +++ L+++T ++ I L LI++ Sbjct: 207 MRKEFVANVSHELKTPITSIKGFVETLKMT--DNLDDDTKNRFLTIIENEATRLTRLIDD 264 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL LS IE + + + L ++ E ++ A++KNI++ + +W Sbjct: 265 ILLLSTIEN-KTKKKVEKVDLFEVFEEVHEVVNYIAKKKNIKVKYEFKNKYIDLWEYSGY 323 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +RQ++LN++SNA+K+T G V++ + + +I +KDNG GI + +I + F + Sbjct: 324 IRQILLNIISNAIKYTGENGSVNIK-QYIKAKKVFIEVKDNGIGIPQEDIERIFERFYRV 382 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A + G GLGL I + ++ G + S+L G + I LP Sbjct: 383 DKARSRSVGGTGLGLAITKHMVKALNGNIKVESELGVGSKFIIELP 428 >gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 840 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 139/263 (52%), Gaps = 8/263 (3%) Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + K A+ + N K FLA +SHEL++PL A++G S +++ E +G LN+ Sbjct: 320 QQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNLNS-R 378 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-- 344 Y I+RSG+ L+ L+N++LDL+R+E G+ +LS + +++ +I + + + Q Sbjct: 379 QVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKYQSK 438 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK ++ +I+P L + ADE + Q++++LL NA+KFT GG++ + V S Sbjct: 439 TEKPVDFSLEIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSD-WLAF 497 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GI E + F Q + +G GLGL + Q + HGG SK Sbjct: 498 NVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAG 557 Query: 464 EGVEVIAILPNTR-VLNFIPEDN 485 +G + +LP + P D Sbjct: 558 QGSQFTLLLPPSPHKEQPSPHDQ 580 >gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70] gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218] Length = 949 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTVMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 592 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 133/257 (51%), Gaps = 9/257 (3%) Query: 228 LEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEV----IELETMG 280 +E + ++ R R E + K+ F A++SHELRTP+N I +V ++ Sbjct: 309 MEQLQKNIEKERIRLSEIKKYDRMKTDFFANISHELRTPINLIFSAIQVYKLKLKECICE 368 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++ YK YI + ++ LL L+N ++D+++I++G + + E +++ +V + + + Sbjct: 369 NSCSDRYK-YIKIMEQNCYRLLRLVNNLIDITKIDSGYFNIDEVNYNIVSLVEDTTLSIA 427 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 + K + I D + D + + +++LNLLSNA+KFT GG + V V + Sbjct: 428 DYIKSKGLSIVFDTDVEEKIIACDPEEIERILLNLLSNAIKFTPRGGNIMVNVE-DGNKS 486 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I +KD G GI + ++ ++ F Q ++ +G G+GL + ++++ HGG ++S Sbjct: 487 ISIKVKDTGKGIPKEKLNSIFERFVQVDKSLARENEGSGIGLSLVKALVELHGGTISVKS 546 Query: 461 KLREGVEVIAILPNTRV 477 K G E I +P V Sbjct: 547 KEGYGSEFIIHIPCKLV 563 >gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442] gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442] Length = 611 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ I + ++ L+N +L L Sbjct: 384 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 441 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 442 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 500 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 501 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 559 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 560 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 603 >gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 877 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 16/273 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + A + AKS+FLA+MSHE+RTP+N I+G SE++ ++ Sbjct: 353 RDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVSEMLRESSL--- 409 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K ++ I+ S + LL LIN+ILD S++E + +LSE L +V E M+ + Sbjct: 410 -PKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTMVEETASMVAIS 468 Query: 343 AQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRG 400 A K + + I P + + V +DE +RQV NLL NAVKFT G R+ V G Sbjct: 469 ASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHGYIRISVRAEPKPGDT 528 Query: 401 ---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++I+D G GI E ++ + +F Q + + +G GLGL I +S+++ + Sbjct: 529 SSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSITKSLLSLFNSELE 588 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + S+ +G L +P E T Sbjct: 589 VVSEYNKGSRFSFTL-------TLPTVPTEGTD 614 >gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 920 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 18/345 (5%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA-----LSF 199 +L L ++AL F L L + ++ I S + L + Sbjct: 399 VLAVLELAALEEFSLIQQELLEQVLDDIGITIDRITSHMQVSKLLKESQVLTEELQTQAE 458 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIA-ELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + K+ + L Q + ELE ++ +E + E+ + KS FL+++SH Sbjct: 459 ELQLQQEELKTFNEKLDEQYKTSHQRTVELEKVRAALEEKAGQLEQTSRYKSEFLSNISH 518 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN++L ++++ L EY I SGQ LL LIN+ILDLS++E+G+ Sbjct: 519 ELRTPLNSLLILAQMLAENDKSNLT-PKQVEYAETILSSGQDLLVLINDILDLSKVESGK 577 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLS 377 ++ A+ L DI + A +K I ID L ++ADE+ + Q++ NLLS Sbjct: 578 MDVCPRAVKLKDIQKFLERQYLPVANQKTIVFTILIDSDLPETIFADEQRLLQILKNLLS 637 Query: 378 NAVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 NA KFT G V +++ + ++ D G GI++ + + F Q Sbjct: 638 NAFKFTEQ-GCVLLSIRKVQKKLTDKQEFPTMLSFAVSDTGIGISQEKHIMIFEEFRQAD 696 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I+ I GG + S+ +G LP Sbjct: 697 GTTSRKYGGSGLGLSISNKIAMLLGGFIELESEEGKGSTFTLYLP 741 >gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1194 Score = 262 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Y I R+G Sbjct: 814 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQLDH----KQRSYTESIRRAG 869 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + ++ Sbjct: 870 SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGLLG 929 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLLSNA+KFT G V + + +G + D GPGI + Sbjct: 930 DITASGDPTRIRQILLNLLSNAIKFTER-GVVGLKLSTLGSYQGLRFEVADTGPGINADQ 988 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GG + S+L G + LP Sbjct: 989 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048 Query: 476 RVLN 479 V + Sbjct: 1049 WVAS 1052 >gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1356 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL-------------NNETYKEY 290 E + K+ F++++SHELRTPL +++GF+++I+ + L + E Sbjct: 883 EVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTLFPLIPTNDHKIQRTLKQVSEN 942 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I G+ L LIN++LDL+++EAGR E +S++D++ II ++ ++E+ Sbjct: 943 VNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVVDVLERAIIATTALFEQNDVEL 1002 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 + ID L + D + QV++NL+SNA KFT G V+ V T G +SI D+G Sbjct: 1003 IKSIDEGLPQIIGDRDRLIQVVINLISNAAKFTDK-GFVYCKVRRT-GSEITVSIIDSGI 1060 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI+E E + F Q + QG GLGLPI + I+ +H GQ + S+L +G Sbjct: 1061 GISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVEHHQGQIWVESELGKGSNFSF 1120 Query: 471 ILPNT 475 LP + Sbjct: 1121 SLPIS 1125 >gi|325262268|ref|ZP_08129006.1| PAS domain protein [Clostridium sp. D5] gi|324033722|gb|EGB94999.1| PAS domain protein [Clostridium sp. D5] Length = 1001 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 9/266 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 AK +E N AKS FL+ MSH++RTP+NAI+G + + + N E ++ Sbjct: 600 RAKHALEEAYASLNTANSAKSDFLSKMSHDIRTPMNAIMGMAAIAKNNLG---NEEKIED 656 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I SG HLL LIN++LD+S+IE+G LSE + D++ E +++Q A +K + Sbjct: 657 CLDKIDISGGHLLELINKVLDMSKIESGNITLSEEKFRIEDVLEEVSLIIQPDADKKRLN 716 Query: 350 IF-QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQ---YI 403 P S V D ++Q++LNLLSNAVK+T G ++V + T G I Sbjct: 717 YRTIVKKPEHSWVHGDAVRVKQILLNLLSNAVKYTNESGYINVYLEEKLTGENGVGCYEI 776 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D+G G+ E + F + + S QG GLGL I +++ G + S+L Sbjct: 777 IVEDDGIGMTEEFCSKMFLPFERAEDSRVSEIQGTGLGLAITSNLVQMMNGTIQVESELN 836 Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489 +G I + D+ ES+ Sbjct: 837 KGTRFIVTIFLRLAREKNESDSTESS 862 >gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] Length = 497 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +E ++A + KS FLA+MSHE+RTPLNAI+GFS ++ + L + E+ I Sbjct: 261 LNEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLD-LTKDDIIEFTSLI 319 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 ++ Q L+ LI++ILDLS+IE+ E + ISL ++ E ++ ++ +E+ + Sbjct: 320 EKNSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNMKK-GVELLLDL 378 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ D + QVI NL++NA+KFT+ G + + + I ++D G G+A+ Sbjct: 379 PGQEITISTDPTRLSQVINNLVNNAIKFTSE-GNICIGYRPATSNRVKIFVEDTGTGMAK 437 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I + F +G +QG GLGL I ++I G+ + S +G ILP Sbjct: 438 EVIEHIFDRFYKGDA----FKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILPL 493 Query: 475 T 475 Sbjct: 494 K 494 >gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] Length = 729 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 104/469 (22%), Positives = 189/469 (40%), Gaps = 24/469 (5%) Query: 35 REIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVM 94 E+ L +S + + L +A + T + + L + A L ++ Sbjct: 7 TEVSEQSSFILKSLSIFVGVVCLAIALLLTDWRSAQSLYV----VLLAFGAGAVLFRRFP 62 Query: 95 NSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI-----AL 149 SD+ +I V Q+ + + +I + ++ + Sbjct: 63 ASDVIAQSWKAAQIQSEVEQLEDPSELASDADWQLREADDRHRSILDALGAIVIRCDSSG 122 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + ++++ V A+ A ++ T + Sbjct: 123 LVLSINDAGKRNFPTGFGIEVGKAIHLPYAEDFTPELEESAAGTTEDVALRTKHGTRWYS 182 Query: 210 SNVKILSCQAEKDDLI-------AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + + +I + A+ R A + AKSRFLA +SHE+RT Sbjct: 183 LLRLSIRDGSGGAPIIQWILTDVTDRRHAEQKLRADRDHAANASEAKSRFLAMVSHEIRT 242 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PLN +LG +++++ + + YI I SG LL LI+E+LD S+IEAG+ EL Sbjct: 243 PLNGVLGMADLLDDTS----TTAEQQNYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELE 298 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVK 381 A+ L +V + +L +A K ++I I P + + +D ++QV+ NL+ NA+K Sbjct: 299 TGAVELTPLVERVVELLSPKAHAKGLQIGSYIAPEVPETIQSDPARLQQVLYNLVGNAIK 358 Query: 382 FTAIGG-RVHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT GG + + V S ++KD GPG+ E + F QG G Sbjct: 359 FTEQGGVSLVLQVSQDSAGNHLLEFAVKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGA 418 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 GLGL I++ + G ++S+L G + +P ++++ E++ E Sbjct: 419 GLGLAISKRLAELMGSSLTVQSQLGCGSTFLLEMPLDQIVDEAIEEHSE 467 >gi|163794214|ref|ZP_02188186.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] gi|159180382|gb|EDP64903.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] Length = 517 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 12/354 (3%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + ++A ++ P + L+ + ++ + D A + Sbjct: 151 IVLAFMAAMLAGAVGFRFLVGRPLNLLLAAIRESAETGVRRVVVWNSRDELGLVTAAYNV 210 Query: 198 SFFTYITYHLFKSNVKILSCQAE------KDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + + ++E DL A + + + RAE N +K++ Sbjct: 211 LVDHEVKRERDLTAANERLTRSEADLSALNRDLEARVLDRTRDLERAKLRAELANTSKTQ 270 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FL SMSHELRTPLNAI+GF++++ +GP+ + Y E+ DIH SG+HLL +I+++LD+ Sbjct: 271 FLRSMSHELRTPLNAIIGFADLMRTGILGPMEHPRYLEFTHDIHDSGRHLLKIIDDLLDI 330 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 +RIE G+ L E A+ L +V +C + A E+ + + + D ++QV Sbjct: 331 ARIEVGQETLREEAVDLDALVSDCHRTVGPMAIERGLSLHIDATAPGLVLRIDRTKIKQV 390 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFG 425 +LNLLSNA+K T GGRV V + G + + D G G+ +IP LT+F Sbjct: 391 LLNLLSNAIKNTPRGGRVSSAVERSPTDGAGSTGDVELRVTDTGRGMTAEQIPMALTAFT 450 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + ++G GLGLP+++ ++ HGG + S++ G +V LP RV+ Sbjct: 451 RLDDDPMLPQKGTGLGLPLSRMMVELHGGALTLESEIGRGTQVTVRLPQARVVE 504 >gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC] gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC] Length = 618 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 10/237 (4%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +F++++SHELRTPL ++ + E + N +++ + ++ +IN++L Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 436 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363 LSR++ G ++ ++L D V + + + I +++ V Sbjct: 437 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 496 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 555 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612 >gi|170077522|ref|YP_001734160.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp. PCC 7002] gi|169885191|gb|ACA98904.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp. PCC 7002] Length = 760 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 12/316 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA------EKDD 223 +VV L + + ++ G + T++++ + IL ++ +K Sbjct: 298 LVVPLIVEQRLWGLLIAHQCHGPRRWRKNEITFLSHVAEYLAIAILQARSYQQLQEQKTS 357 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI----ELETM 279 L + ++ A+ + +K F+ MSHEL TPL +I+G S + + Sbjct: 358 LETLAQRRARELEDALLSAQVASQSKKEFIHIMSHELLTPLTSIIGLSNTLSYWTADDNP 417 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 L+ E + Y+ IH SG L NL+ +ILD S+ EA R L SL + + Sbjct: 418 KKLSPEKQRVYLQTIHESGTRLRNLLQDILDFSQTEAARSVLDLQKFSLKQLCYRVLNGF 477 Query: 340 QLRAQEKNIEIFQKI--DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 Q + I + +P S +AD + +++ +LLSNA+KFT+ GG V ++ Sbjct: 478 QELGDRQGINLKFINQLEPEQDSFYADPIRLEKILSHLLSNAIKFTSHGGEVTFSIWREK 537 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + +KD G GI +IP + F Q ++ G G GL + + ++ H GQ Sbjct: 538 QKDVSFQVKDTGIGIPPQQIPLLFEQFQQLEPSMSRRYDGAGFGLALVKQLVEIHQGQIH 597 Query: 458 IRSKLREGVEVIAILP 473 + S ++G +P Sbjct: 598 VTSTPKKGSIFTVRIP 613 >gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385] gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385] Length = 857 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTIINAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGL 575 Query: 349 EIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + ++ V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721 >gi|29346647|ref|NP_810150.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338544|gb|AAO76344.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 641 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 131/289 (45%), Gaps = 24/289 (8%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 +L +L L + + + +L ++ + RAEE N Sbjct: 372 ALVVILVLGLCISLFYYFRTKRLKDDLL--------------KSEKDLRVAKDRAEESNR 417 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 KS FLA+MSHE+RTPLN+I+GFS+V+ +G E + Y I + LL LIN+ Sbjct: 418 LKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGNTEEEQQTYYQIIKTNSDLLLRLIND 474 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILDLSR+EA R L+ ++ + R+ + + + +++ + D + D + Sbjct: 475 ILDLSRLEANRVTLTWEECDVVQLCRQVVASVSV-SRQSGNQFLFVSDYESFRMTTDIQR 533 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 M+QVI+NL+SNA KFT G++ + S+ D G GI + + V F + Sbjct: 534 MQQVIINLMSNADKFTRK-GQITLEFSVNEETEMAVFSVTDTGCGIPKEKQKLVFERFEK 592 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 QG GLGL I + I+ G I S+ G + P Sbjct: 593 L----NEYAQGTGLGLSICKLIVHKWKGDIWIDSEYTGGARFMFSHPLK 637 >gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes EGD-e] gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes Finland 1988] gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL R2-561] gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes J0161] gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes J2818] gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes F6900] gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes EGD-e] gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes F6900] gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes J2818] Length = 591 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + +++ + + A EKNI++ + ++ SV D Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. glycinea str. race 4] Length = 636 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 + + + + H+ + E + + + +TR+ AE+ N AK Sbjct: 215 VPLPVSDDAELGALARHINNLAENLHRTSLE-------QQRSVAQLIQTREEAEQANRAK 267 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHELRTP+N +LG +++E M EY S +HLL +IN+IL Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLMETTRMTA----EQSEYATLATESTEHLLRVINDIL 323 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKG 367 D SRIE ++ A +L ++V A ++ + + I P L +V D Sbjct: 324 DFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRELLLELHIQPGLDTVTVTGDPTR 383 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQYIS--IKDNGPGIAEGEIPTVLTS 423 +RQ+++NL+ NA+KFT G+V V W + + + D+G GI + ++ + Sbjct: 384 IRQILVNLIGNALKFTEQ-GKVSVVAQWAMLDNDQLHFTCAVHDSGIGIDAERLESMFDA 442 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q +I G GLGLPIA+++ GG S+ G +P Sbjct: 443 FKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQEGSGSVFTLQIPL 493 >gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509] Length = 708 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 210 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 265 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 266 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 325 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 326 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 383 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 384 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 443 Query: 469 IAILPN 474 +P Sbjct: 444 TVRIPL 449 >gi|152974373|ref|YP_001373890.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023125|gb|ABS20895.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 462 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 22/330 (6%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 L + V ++A ++++ + L+ +L L + T + + ++ Sbjct: 144 FLGTNSIKQMVNGLTKQFMIAGLITFLLTV-ITIFLLSRLLTKPLIRMKHATEKMSRGDL 202 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN------LAKSRFLASMSHELRTPLNA 266 +S + ++D I EL A N +S FLAS++HELRTPL Sbjct: 203 S-ISLRTSRNDEIGELASAIQTL---------ANDLHYMKKERSEFLASVAHELRTPLTY 252 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 + G++E+ + T P E Y+ I ++ NL+ ++ L+++E + + I Sbjct: 253 VKGYAEIAQKRTTQPTEREK---YLSIIKEEADYITNLVQDLFILAQMEKHNFLIEAKRI 309 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 L + + + +K++ + PSL + DE+ QVI+N+L+NA + +A Sbjct: 310 DLEKFLNRIVTKVNGIYVQKHLTVSLTCPPSL-FITLDERRFEQVIMNILNNAYRHSAEY 368 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 + +TV ISI+D G GI +IP + F + A A G GLGL I + Sbjct: 369 SVITITVTAYVSH-IKISIQDTGEGIPPEDIPHIFERFYRVDKARSRATGGTGLGLAIVK 427 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I+ H G + SKL +G LP + Sbjct: 428 EIVELHDGHITVSSKLNKGTCFTITLPREK 457 >gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 812 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 6/236 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ ++++SHELRTPL++I GF+E++ + P K+Y+ +H + L Sbjct: 582 EIDRIKNELVSTISHELRTPLSSIYGFTELMIQRDLPPH---RQKKYLAAVHSETERLSL 638 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ LDL R+EA R E + L+ ++++ + L + +I IF + ++ + Sbjct: 639 LINDFLDLQRMEANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRIF--SEETVQIING 696 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D K +RQ+ NL++NA+K++ GG + + V +++ D G GI + + Sbjct: 697 DSKKIRQLFGNLVNNAIKYSPDGGPIEIRVT-EHNNRVTVALTDYGIGIPSSAMSELFQK 755 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 F + + G GLGL I + I H G+ + S +G LP Sbjct: 756 FYRVDNSDTRQIGGTGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLPLNPTPP 811 >gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 948 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 8/304 (2%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + H+ + G + +++V+ L A + + ++ Sbjct: 361 ADRFTFFRHLSVPVIEGNNVRMVMGVGNKAEDYNQNDVRQLQTVANEVGKFVQRRRSEIA 420 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 A + N AKS FLA MSHE+RTP+NAI+G + + Y+ Sbjct: 421 LRIASDEALKANRAKSDFLAVMSHEIRTPMNAIMG----MTELLEETELTTIQRNYLSIC 476 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 SGQ+LL LIN+ILD+S++EAGR E++ + L I+ + ++ RAQEK + I Sbjct: 477 RSSGQNLLQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKGLNQIVYI 536 Query: 355 DPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGR---VHVTVGWTSGRGQYISIKDNGP 410 DP++ ++ D+ +RQ+++N L N+VKFT G V I + D G Sbjct: 537 DPAVPTILLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLVIHVVDTGI 596 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + E + +F Q + + + G GLGL I ++A G + S+ +G Sbjct: 597 GIEQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAGKGSTFTL 656 Query: 471 ILPN 474 LP Sbjct: 657 TLPL 660 >gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] Length = 620 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 ++ +F++++SHELRTPL ++ + E + N E +++ + ++ +IN+ Sbjct: 379 SQRQFVSNVSHELRTPLTSLQAYIEALNEGAW--KNPEIAPKFLEVTQQETSRMIRMIND 436 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI------EIFQKIDPSLSSV 361 +L LSR++ G ++ ++L D V + + + I +++ V Sbjct: 437 LLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWV 496 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 497 EIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQ-NQNHVILSISDQGLGIPRKDLGKIF 555 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 556 DRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYEPMTEE 614 >gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 3470 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 1/230 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + AK F+A++SHELRTPL I GF +++ L +G L++ +E + + + ++ Sbjct: 3228 EADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDP-QREMLNTVKTNAMRMVG 3286 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+ ++L++ R+EAG+ L+ + + +VR+ + L ++KN+ + ++D +L + Sbjct: 3287 LVEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDTLPLIEY 3346 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D K + QV+ N++SNA+K+T GG V + + + +KD G G+ + ++ Sbjct: 3347 DSKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQKSMFKR 3406 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + ++ G GLGL IA+S + H G ++S EG LP Sbjct: 3407 FYRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456 >gi|325921960|ref|ZP_08183768.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325547559|gb|EGD18605.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 913 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 6/288 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L+++ R +AE + K FLA++SHELRTPL Sbjct: 486 QAMARSASHLAGIVIERTRVDAKLKLSLQAETSARGQAEHASRVKDEFLATLSHELRTPL 545 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + P + + I RS + +I+++LD+S I +G+ L Sbjct: 546 NAILGWSRLMQSDIFEP---ANLGKGMVIIERSARAQTQIIDDLLDMSAILSGKIRLQPE 602 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + + R + ++Q A + I + + D ++QV+ NLLSNA+KFT Sbjct: 603 HFDIAGLARSTVELMQPAAFAREISLELDAPTQGELWFFGDAGRLQQVLTNLLSNALKFT 662 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 A GG V V + + ++D+G GIA +P V F Q G+GLGL Sbjct: 663 APGGTVRVALDI-EDERLRLCVQDSGMGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 721 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQ 490 I++ ++ HGG S+ +G +LP ++ + + E+ Q Sbjct: 722 ISRQLVDLHGGSLGASSEGEGKGSMFTIVLPFQHGVSDLRPASTETKQ 769 >gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1412 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 163/400 (40%), Gaps = 27/400 (6%) Query: 102 EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPY 161 + R + + G L + + I +L + ++++ + + Sbjct: 695 QAARSRRTIAADALPAGYLAASSGLGRTEELSLLVVPIVVEDQVLGVIELASIRPYPAVH 754 Query: 162 AVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY------ITYHLFKSNVKIL 215 FL V ++ I++ D L L SN ++ Sbjct: 755 RAFLDQLMETVGVNLNTIVANARTDELLGESQRLTSELQARSQELQARQEELQASNAELE 814 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHELRTPLNAIL 268 A ++E ++ R+ EE + KS FLA+MSHELRTPLN++L Sbjct: 815 EKAALLAAQNRDIETKNLEIEQARQELEERAHQLSLASTYKSEFLANMSHELRTPLNSLL 874 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 ++++ L EY G IH +G LL LIN+ILDLS++EAG+ +LS ++L Sbjct: 875 ILAQLLAQNPTRNLT-AKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDLSPEPVAL 933 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG 387 ++ + +KN+ + P + + D+ +RQV+ NLLSNAVKFT G Sbjct: 934 RSLLDYAEATFKPLTGQKNLAFTVRTSPDVPERLVTDDYRLRQVLRNLLSNAVKFTEQ-G 992 Query: 388 RVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 RV + +G G + D G GIA + +V +F Q Sbjct: 993 RVELRIGLAPQDRIPEGVRRGGPVLAFQVSDTGIGIAPQHLESVFGAFQQADGTTSRKYG 1052 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 G GLGL I++ I GG S L G LP +R Sbjct: 1053 GTGLGLSISREIAYLLGGAITAESVLGAGSTFTLFLPVSR 1092 >gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055] Length = 613 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ I + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1] gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1] Length = 565 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ + ++ I + + Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLEMFLNIILKESNRI 394 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE E+ S ++L ++ I LQ +A KNIEI +I+ + + Sbjct: 395 ESLVMDLLDLSHIEQQN-EIETSYMNLSELAYNTIDNLQTQATNKNIEIKSEIEKDVI-I 452 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ ++ +V V V G+ + I+D G GI+ + + Sbjct: 453 EAHENKVAQVITNLLSNAINYSLEDSKVIVRVYR-EGKKVNLEIQDFGIGISAKDQKHIF 511 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ + SK EG Sbjct: 512 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRISVSSKPGEGSTFKVTF 562 >gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 5 str. 8401] gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401] Length = 949 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|332663617|ref|YP_004446405.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332332431|gb|AEE49532.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 572 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 18/297 (6%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 M F I L++++ + + +LE + ++RAE+ K R Sbjct: 1 MWVGYSFFILLIAAILYRNSQQKSRAVNVFKQALIKLEATQIQLIAQKERAEQSEKFKQR 60 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA MSHE+RTPL+ I GF++++ ++ +E + ++ I+ S + L ++N +L+L Sbjct: 61 FLAHMSHEIRTPLHGIAGFTDLLLETSL----SEKQRRWLSSIYHSTERLDEVVNAVLEL 116 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S++EAG +L + S + + L LRAQ K I + + ++ ++ D + Q Sbjct: 117 SKLEAGELKLRKIPFSPAKVAADVQESLSLRAQNKGINLLLDVHKNVPGALRGDPTRLYQ 176 Query: 371 VILNLLSNAVKFTAIGGRVHV------TVGWTSGR------GQYISIKDNGPGIAEGEIP 418 +++NL NAVKFT G V + ++ TS + I D G GI +I Sbjct: 177 ILMNLTGNAVKFTEK-GSVTIKMDCAESIERTSDDPATNWVTLILRIIDTGIGIPAEKIT 235 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 V SF Q + + G GLGL + Q ++ HGG + S L G LP Sbjct: 236 AVFDSFEQAGEDMVARYGGTGLGLTVTQELVQLHGGDIQVESALGVGTTFTVKLPFA 292 >gi|295107846|emb|CBL21799.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 672 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 8/255 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + +AE N AKS FL +MSH++RTP+NAI+G++E+ + Sbjct: 279 KQEEELREAKLKAECANKAKSSFLFNMSHDIRTPMNAIIGYAELASRHL---QETDKLGR 335 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y+ I G+ LL ++ +LDL+RIE + E+ + ++ + CIIM Q +A+ K+ Sbjct: 336 YLEKIQICGKELLAMLGNVLDLARIENNKVEMEYTVSNVHECFENCIIMFQQQAESKSQT 395 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYIS 404 + V+ D + +V LN++SNA+K+T GG + + I+ Sbjct: 396 LSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGTISCNVVQKSCEKEDWCNMIIT 455 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I DNG G++E + +F + S G G+G+ I + ++ G ++SK E Sbjct: 456 ITDNGIGMSEEFQKRIFETFERERNTTLSHIDGSGIGMGITKKLVELMDGTIEVKSKQGE 515 Query: 465 GVEVIAILPNTRVLN 479 G + +P + Sbjct: 516 GSQFTVTIPCRKASE 530 >gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5578] gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5923] gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5578] gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5923] Length = 591 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + +++ + + A EKNI++ + ++ SV D Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] Length = 616 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 8/233 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL +I ++E + N E ++ I ++ +I Sbjct: 376 DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--ENKEIAPGFLKVIETETDRMMRMI 433 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA-----QEKNIEIFQKIDPSLSS 360 ++L+LSR++ R L + I++ ++V + ++ +EKN I I Sbjct: 434 TDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDITQRDLW 493 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D+ + QV+ N+++NA+K++ GGR+ V + T +S+ D G GIA +IP + Sbjct: 494 VELDQDKITQVLDNIINNAIKYSPDGGRIIVRLMETHTD-IIVSVSDEGLGIARKDIPHL 552 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A A G GLGL IAQ ++ HGG+ + S +G LP Sbjct: 553 FDRFYRVDKARSRAMGGSGLGLAIAQEVVQLHGGKIWVNSIENKGSTFFVSLP 605 >gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus UQM 2246] Length = 461 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 6/235 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A+ SHEL+TP+ I E ++ + T ++ + R + Sbjct: 227 QAERMRQDFVANASHELKTPIAVIKSSVEALQDGA--AEDPHTLASFLEQVARESDRMTY 284 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS--- 360 L+ ++L LSRIE+G L + L + +C+ RA K + + +K P + Sbjct: 285 LVKDMLSLSRIESGSLGLEPRVVVLDREISDCMERHHPRADTKTLTLVEKPPPDAPANVA 344 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 WAD +RQV+ NL+ NA+K+T GGR+ V G T+ ++D G GI EG++ V Sbjct: 345 AWADPDALRQVMDNLVDNAIKYTPNGGRITVRWGATAD-TVSFEVEDTGVGIPEGDVNRV 403 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A AE GLGL I + ++ GQ + SKL +G LP Sbjct: 404 FERFYRVDRARGRAEGSTGLGLSIVKHLVQAMRGQVRVNSKLGKGTTFRVTLPRA 458 >gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 953 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 16/252 (6%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 K F + +SHELRTPL +I G ++ + P +E + IG S + L+ Sbjct: 696 AIERMKDEFTSVVSHELRTPLTSIHGALNLLSTGLIQP-QSERGQRVIGIAADSAERLVR 754 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID--PSLSSV 361 L+N+IL+L R+E+G+ LS+ ++ +++ + + +Q+ A I++ S Sbjct: 755 LVNDILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEVSPQAIESEIEF 814 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------------QYISIKDN 408 AD + QVI NLLSN +KF+ G + +TV ++KD Sbjct: 815 EADSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATILFTVKDQ 874 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI ++ ++ F Q + + G GLGL I ++I+ HGG+ + S + EG Sbjct: 875 GRGIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVESTVGEGSSF 934 Query: 469 IAILPNTRVLNF 480 LP Sbjct: 935 YFTLPQQTAAAA 946 >gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 915 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 8/284 (2%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L + + + + I E + + R AE +KS FLA+MSHELRTPL + Sbjct: 501 LIRDDHGRVVQFHDVVRDINETKRLEDELIAARDVAEAAARSKSEFLANMSHELRTPLTS 560 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ++GFS +++ P + Y I S + LL++IN+ILD S++EA L A Sbjct: 561 VIGFSGLLQSSEALPAAE---RRYADRIATSSEALLSVINDILDYSKLEADAVGLDPVAF 617 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 + R +++ + + K + + L ++ DE +RQV LN LSNAVKFT Sbjct: 618 DPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLRQVTLNFLSNAVKFTNT 677 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G + + VG +++ D+G G+A +I + F Q + G GLGL I Sbjct: 678 -GEIRLDVGSV-DGRMRVAVTDSGIGVAADKIDALFERFTQADASTTRVYGGTGLGLAIC 735 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNHE 487 + ++ GG+ S+ G +P L+ + ED E Sbjct: 736 RRLIEMMGGEIGATSRPGHGSTFWFEVPMIAAEPLDAMVEDAVE 779 >gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str. Australia 94] Length = 613 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ I + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 623 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 7/319 (2%) Query: 177 QAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD--DLIAELEVAKSL 234 A+ L + +T L +L +++ +A Sbjct: 165 SALEHRRTTLAQLQLAARRHQLWTLILTGALMSGAALLLMWLVDRNIGRPMATATAVARQ 224 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 D AK FLA+MSHELRTPL +ILG SE + +GPL+ ++ I + Sbjct: 225 MDRANAELARAAQAKDEFLAAMSHELRTPLTSILGLSETMGDGLLGPLS-AQQEKAIRMV 283 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 H +G HLL LIN+ILD+SR+ +G+ L + + + + ++ A+ K +++ I Sbjct: 284 HENGTHLLELINDILDMSRVASGQMHLRWDQVPVDQLCEASLRLIGPSAKRKGLKVSLTI 343 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIA 413 DP V D + ++Q+++NLL NAVKFT GG + + V I D G GI Sbjct: 344 DPQARLVRGDSRRLKQMLVNLLGNAVKFTPEGGAIGLDVQADPEHGELRFGIWDTGVGIP 403 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL- 472 + + F Q G GLGL + + H G+ + S++ G L Sbjct: 404 REQFERLFQPFVQLDSRPARQYDGTGLGLALVSGMAELHQGRIQVESEVGRGSRFEIRLP 463 Query: 473 --PNTRVLNFIPEDNHEST 489 P + + + D ES Sbjct: 464 WDPAAQRADRLQPDPAESN 482 >gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex domain structure [Aromatoleum aromaticum EbN1] Length = 1519 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 15/273 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I+E + + R+ AE+ + AKS FLA+MSHE+RTP+N ++G EV+ ++ Sbjct: 839 LRDISERKAFIAALTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLARTSL-- 896 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + + I S LL +I++ILD S+IEAGR +L +S+ D+V L Sbjct: 897 --SEHQADLVATICGSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLP 954 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A ++++ + P + V ADE +RQV+ NL+ NAVKF+A V V Sbjct: 955 LAARLDVDLSVFVSPEVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVA 1014 Query: 401 QY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 +SI DNG GI ++ + F Q + G GLGL I + ++ G Sbjct: 1015 DVVPLQLAVSIVDNGIGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEG 1074 Query: 455 QFLIRSKLREGVEVIAILPN----TRVLNFIPE 483 +RS+ +G +P + +PE Sbjct: 1075 GIKVRSEPGQGSTFTVTIPFVLSDEQPAPILPE 1107 >gi|27367166|ref|NP_762693.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus CMCP6] gi|50401046|sp|Q8D5Z6|LUXQ_VIBVU RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|27358734|gb|AAO07683.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus CMCP6] Length = 857 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238 + +A AT I +F+ N+ + + +I + + A+ S+ Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ ++ FLA MSHE+RTPLN ILG +++++ N+ + + + SG Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 +HLL ++N+ILD S+IE G++ + + + D + + + +EK + P Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412 + D+ + Q++ NL+SNAVKFT GR+ V+ + I + D G GI Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEKFARSEHSILSIQVSDTGIGI 648 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++ ++ F Q G GLGL I ++++ G+ ++S+L +G + Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708 Query: 473 PNTR 476 P + Sbjct: 709 PVEK 712 >gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1] gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1] Length = 1988 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 16/236 (6%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 1269 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NAEQLEHVNIIKASTDSLLNLIND 1324 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + L ++ E + A +K +E+ ++ + V D+ Sbjct: 1325 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKF 1384 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT G + + + + D G G + E Sbjct: 1385 RIRQVLLNVVGNAIKFTER-GEIFIRCKVQPPDRSRPLKENETMVRFEVIDTGQGFTDAE 1443 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q + G GLGL I+ + HGG+ RS +G + Sbjct: 1444 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1499 >gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 472 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 94/253 (37%), Positives = 148/253 (58%), Gaps = 3/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 ++A+ + ++ E+EN K +F AS++HELRTPLNAI+GF+E+I+ ET+G Sbjct: 209 NTKMLAKQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLG 268 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++N YKEY DI+ +G HLL LIN++LD S+ E+ + + +L IV CI ML Sbjct: 269 SMDNSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIVDSCINMLL 328 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 + +E I + ++I V AD K M+QVI+NLLSN++KFT GG + + V Sbjct: 329 PKLRETEINLKKEIPNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIRMVVKENIEKN 388 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I DNG GI + +I V++ FGQ ++ +G G+GLP+++ ++ GG F I+ Sbjct: 389 LLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGTFDIK 446 Query: 460 SKLREGVEVIAIL 472 S+ + G + Sbjct: 447 SEAKLGTTITLNF 459 >gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 2314 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 16/236 (6%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 1621 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NAEQLEHVNIIKASTDSLLNLIND 1676 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + L ++ E + A +K +E+ ++ + V D+ Sbjct: 1677 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKF 1736 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVG----------WTSGRGQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT G + + + + D G G + E Sbjct: 1737 RIRQVLLNVVGNAIKFTER-GEIFIRCKVQPPDRSPPLKENETMVRFEVIDTGQGFTDAE 1795 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q + G GLGL I+ + HGG+ RS +G + Sbjct: 1796 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1851 >gi|51832271|gb|AAU10319.1| two-component histidine kinase [Alternaria brassicicola] Length = 1328 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 13/264 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + + +++ L + + R+ AE N KS FLA+MSH++RTP+N I+G +++ Sbjct: 710 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHKIRTPMNGIIGMTQLTL 769 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + +E + +H LL +I++ILD+S+IEA R + E S+ + Sbjct: 770 DTDLTH----AQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNA 825 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + RA E+ + + + + V D +RQ+ILNL+ NA+K T G V V + Sbjct: 826 LKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILNLVGNAIKLTEP-GEVKVAIS 884 Query: 395 WTSGRGQ-------YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ D G GI ++ + +F Q + G GLGL I++ Sbjct: 885 MAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKR 944 Query: 448 IMANHGGQFLIRSKLREGVEVIAI 471 ++ GG+ + S +G Sbjct: 945 LVTLMGGRMWVESDAGKGSVFYFT 968 >gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1619 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 10/259 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I E A+ + + A+E + AKS FLA+MSHE+RTP+NA+LG +++ + Sbjct: 872 NRDITEQLQAEQELRQAKALADEASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRTAL-- 929 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + +Y+G ++G LL+L+N+ILD S+IEAG+ +L S+ +++R+ ++L Sbjct: 930 --DARQADYVGKAQKAGTSLLSLLNDILDYSKIEAGKLQLDLHPFSMEELLRDLSVVLSG 987 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 Q +EI ++ + + D ++QV++NL NA+KFT G V + V + Sbjct: 988 NHQRPEVEIVYRLGRDIPDCLIGDSLRLQQVLINLAGNALKFT-EHGHVLLNVDLLHRQP 1046 Query: 400 ---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++++D+G GI+ + + SF Q + G GLGL I++ ++ GGQ Sbjct: 1047 QAVTLRVTVEDSGIGISAEQQQRIFHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQL 1106 Query: 457 LIRSKLREGVEVIAILPNT 475 + S L EG LP Sbjct: 1107 QLHSVLGEGSRFWFDLPLA 1125 >gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 659 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 10/263 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +++++AE + KS FLA+MSHE+RTP+N I+G ++++ + + EY+ Sbjct: 285 ALLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTTDL----DAEQLEYVDY 340 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 +S L +L+ +ILDL+ +EAG+ EL + + + + + A+EK + + Sbjct: 341 ALKSSSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFD 400 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG--RGQYISIKDNGP 410 I P + V D ++QV++NL+ NA+KFT GRV V V + ++D G Sbjct: 401 ISPEVPETVDGDALRLQQVLVNLVGNALKFT-EHGRVDVEVFLNDKRAKSLLFKVRDTGI 459 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GIA+ + F QG + K + QG GLGL I + ++ GG+ + S L +G Sbjct: 460 GIADDIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSF 519 Query: 471 ILPNTRVLNFIPEDNHESTQYKC 493 +P V + + K Sbjct: 520 TMPL--VTEELDTSAEKDQTLKV 540 >gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis Bt4] gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 987 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 93/435 (21%), Positives = 168/435 (38%), Gaps = 34/435 (7%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAA---NLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 +LV + +SL+T L + + LL Sbjct: 321 VLVHAYSWKTIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYRRA--QRLLES 378 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 ++ + + + + +N ML + S P+ Sbjct: 379 EVLNRAILRTAPVGLGLLSAHDGSVLLQ-------------NNAMLELSARTSGEPLPNR 425 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAE 227 L + + +L L+ + ++ ++NV + L I+ Sbjct: 426 LWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISM 485 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + ++ E R +++ N AKS FLA+MSHE+RTPLNAI+G E++ + Sbjct: 486 RKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQ 541 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 E + + LL++IN+ILDLS++E+G+ L + +++E + A+ K Sbjct: 542 SERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKG 601 Query: 348 IEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQY 402 +++ + ++ + D +RQ++ NL+ NA+KFT G + V V Sbjct: 602 LQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIE 660 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GI I T+ + Q +I G GLGLP+ + + GG + S Sbjct: 661 IWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLP 720 Query: 463 REGVEVIAILPNTRV 477 G V +LP Sbjct: 721 DFGTTVTVVLPLREA 735 >gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 641 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 26/315 (8%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 H + + + +L +F + + K + L E + + + + DE+ + Sbjct: 193 RHKVYLIVGLVLVLITAFSLIVAVRIKKPLQQALELLQEIPEQYRPV-QSVTALDESNRL 251 Query: 242 AEEE-----------------NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + AK FLA MSHE+RTP+NAI G +E+ + + Sbjct: 252 LRAMVNLVTALKAAKEQAEAASSAKGAFLAQMSHEIRTPMNAISGLTELALDQA----PS 307 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + I + HLL+LIN++LD S++EAG EL + +L + ++ +R + Sbjct: 308 AQQRELLEGISHAANHLLSLINQVLDFSKLEAGIVELEQIPFNLRQTLTATLLPFSVRVR 367 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGR--G 400 K + + +L V D +RQV++NL+ NAVKFT G + V G +G Sbjct: 368 SKGVRFETVLADNLPTRVIGDPTRLRQVLVNLVGNAVKFTRQGCIEIDVEKGEQTGNHCE 427 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I ++D G GI + +I + + Q + + G GLGL I + ++ G + S Sbjct: 428 LRIMVRDTGIGIPQEKIAQIFAPYSQAAASTTREFGGTGLGLSIVKQLLEVMQGTITVES 487 Query: 461 KLREGVEVIAILPNT 475 + G +P Sbjct: 488 QPGAGTCFSVSVPVE 502 >gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 621 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + + LL LI++ILDLS+IEAG +++ + + E + +Q+RA Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +EI + + +D+ + QV+LN ++NA+KFT+ G + + +G S Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + + I G GLGLPI QSI+ GG+ + S+ + Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610 Query: 465 GVEVIAILP 473 G P Sbjct: 611 GSCFWFTHP 619 >gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 615 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ E + + A+ K I I D + D + ++ILNLLSN++KFT GG + Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTDVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V + G YI +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVKIK-DCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I+S+L +G E I LP Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLPA 585 >gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1051 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 124/243 (51%), Gaps = 17/243 (6%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE + AKS FLA MSHELRTPLN ILG E+ +E +Y+ +SG Sbjct: 664 AAEAASRAKSMFLAHMSHELRTPLNGILGMVEL----AHMACADEKQCKYLELAKQSGHT 719 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL++IN+ILDL++IEAG+ EL SL +++ I L + + K +E+ ++DP + Sbjct: 720 LLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVTWRMDPRIPD 779 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----------GQYISIKDN 408 + D+ +RQV+ NL+ NA+KFT G V V +G + G SI D Sbjct: 780 RLAGDQGRLRQVLANLVGNALKFTER-GSVSVDLGLSRGGFETRPYCPAGMRLIFSIADT 838 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + ++P + SF Q + G GLGL I++ ++ G S + +G Sbjct: 839 GIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIWAESVVGKGSTF 898 Query: 469 IAI 471 Sbjct: 899 SFT 901 >gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 621 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + + LL LI++ILDLS+IEAG +++ + + E + +Q+RA Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +EI + + +D+ + QV+LN ++NA+KFT+ G + + +G S Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + + I G GLGLPI QSI+ GG+ + S+ + Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610 Query: 465 GVEVIAILP 473 G P Sbjct: 611 GSCFWFTHP 619 >gi|284052588|ref|ZP_06382798.1| sensory box histidine kinase/response regulator [Arthrospira platensis str. Paraca] Length = 655 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 12/228 (5%) Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+N +LG + ++ + K+++ I S HLL +IN+ILD S++ Sbjct: 1 NMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSANHLLAIINDILDFSKL 56 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EA EL + L + + I +L +A+ K IE+ +D ++ + D +RQV+L Sbjct: 57 EAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLL 116 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQ------YISIKDNGPGIAEGEIPTVLTSFGQG 427 NL+SN +KFT G V + V ++D G GI + +F Q Sbjct: 117 NLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQV 175 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + G GLGL I + ++ GG+ + S + +G LP + Sbjct: 176 DASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFS 223 >gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 589 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 7/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E ++ F+++++HEL+TP+ +I GF E ++ M ++ I + Sbjct: 360 RKLE---QIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAE--RFLEIIDIEAE 414 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + + L +V + ++Q A+EK I + + + Sbjct: 415 RLHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL 474 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + A+ M+Q+I+NL+ N +K+ G V V G+ IS+KD G GI IP Sbjct: 475 -MKANINRMKQLIMNLVDNGIKYNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + G GLGL I + I+ + G+ + S + EG E I +P Sbjct: 533 IFERFYRVDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 621 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + + LL LI++ILDLS+IEAG +++ + + E + +Q+RA Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +EI + + +D+ + QV+LN ++NA+KFT+ G + + +G S Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + + I G GLGLPI QSI+ GG+ + S+ + Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610 Query: 465 GVEVIAILP 473 G P Sbjct: 611 GSCFWFTHP 619 >gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] Length = 615 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G L+ +++ Sbjct: 383 AVQLL-DFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ E + + A+ K I I + + D + ++ILNLLSNA+KFT GG + Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V + S Y+ IKD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNIK-DSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G+ I S+L +G E I LP Sbjct: 561 EMHNGKVTINSELGKGTEFIIKLPA 585 >gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 637 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 9/284 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++E++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 415 ELRTPLNSILGFAQLLEMD-----SPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 L +SL ++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 470 VSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLS 529 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + + T+ + +S+ D G GIA I + F + + +G Sbjct: 530 NAIKYNRPAGQVRIEIEQTAEQ-VTVSVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +++S++ G +++ EG I LP RV Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPFVRVQPPA 630 >gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 621 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 382 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 437 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + + LL LI++ILDLS+IEAG +++ + + E + +Q+RA Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +EI + + +D+ + QV+LN ++NA+KFT+ G + + +G S Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + + I G GLGLPI QSI+ GG+ + S+ + Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 610 Query: 465 GVEVIAILP 473 G P Sbjct: 611 GSCFWFTHP 619 >gi|163792880|ref|ZP_02186856.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181526|gb|EDP66038.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 743 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 154/380 (40%), Gaps = 17/380 (4%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W L P K L+ A + ++ + +A+ Sbjct: 105 VWASLPDEAPTRVDQAAEIREKLEILVEAAASGGFRFWLEAERLIEQTKTFTLAVVAVVA 164 Query: 180 MSMHVLDISLAGMLATALSFFTY----ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + L + V L + E + A L V K Sbjct: 165 AAALAVAAWMIQTIVRPLGRMERSMTALAGGERDVAVPDLGRRDEVGAMAAALAVFKDAM 224 Query: 236 DE---TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 E ++RAE AKS FLA MSHE+RTP+N ++G + ++ + + +E G Sbjct: 225 AEVRDAKERAEAATRAKSEFLAMMSHEIRTPMNGVIGMTRLLLDGDLAARD----RETAG 280 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + SG+ L+ ++N+ILDLS++EAGR EL + +V + ++ RA EK + + Sbjct: 281 VVLESGEALMTILNDILDLSKLEAGRLELEVIDFDVRRLVEGTVTLMSGRASEKGLALQA 340 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKD 407 ++ + + D +RQV+LNL+ NAVKFT G V V V + + + D Sbjct: 341 RVADDMPQYLRGDAGRLRQVVLNLVGNAVKFTDA-GSVTVRVTRSGSDQTTVPLVLEVID 399 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G G+ E + F Q +I G GLGL I++ ++ GG + S G Sbjct: 400 TGIGMDETARSRLFQEFAQADASIARRYGGTGLGLSISKRVVDRMGGAIEVDSASGRGST 459 Query: 468 VIAILPNTRVLNFIPEDNHE 487 L + + + E Sbjct: 460 FRVHLSIPEGVAPTADSDDE 479 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 9/298 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAE---KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 + ++ + ++ AE I+E + + + R+RAE + KSRFLA Sbjct: 357 GHYVWLESTMRRACDTDGRQTAEVIGITRDISERKRHEMELLDARERAETASRTKSRFLA 416 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHELRTPLNAI+GFSE++ ++ G L + Y EY I+ SG LL+LI++ILD+S+I Sbjct: 417 NMSHELRTPLNAIIGFSEILRMQMFGALGHPRYTEYAQLINESGALLLDLISDILDMSKI 476 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF--QKIDPSLSSVWADEKGMRQVI 372 EAG+YEL + ++ C+ +++ RA+E I + + ++ ADE+ ++Q++ Sbjct: 477 EAGKYELHPETVDAAALIESCVRLVRGRAEENGIHLVKKIQCAELGGTLVADERALKQIM 536 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 LNLLSN+ KFT GGR+ V + T ++ D G GI +I + F Q + Sbjct: 537 LNLLSNSAKFTPAGGRISVALTETEE-TICFAVADTGRGIPADQIARLGQPFEQIATDAA 595 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR---VLNFIPEDNHE 487 +++G GLGL + +S+ HGG I S+L G V LP + + P E Sbjct: 596 LSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLPKIPYCALPSSAPAAEPE 653 >gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1101 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 11/260 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + I+ + + E R + +E + KS FLA++SHE+RTP+N ILG + ++ + Sbjct: 572 EDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTGELKESHLSG- 630 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I + +LL +IN++LD SR EAG EL + + L +V E ++ + Sbjct: 631 ---EQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVSEAEQIVAFQ 687 Query: 343 AQEKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV------TVGW 395 +++ I +D + ++ D + +RQV++NLL NA KFT G + Sbjct: 688 IRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLVHLQPGKAEA 747 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + + + D G GI+E + +F Q +I G GLGL I++ ++ GG Sbjct: 748 SDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISKHLVGMMGGT 807 Query: 456 FLIRSKLREGVEVIAILPNT 475 S G LP Sbjct: 808 IGFESCQGVGSTFWFTLPLQ 827 >gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 315 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 3/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E K+ F++ +SHE+RTPL AI G E++ + E ++ + + + LL Sbjct: 86 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEA-EQMLKIGVSNSERLLR 144 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI-DPSLSSVW 362 L+N IL+L +++G+ L+ + +V++ + ++ AQ+ +IEI D + + Sbjct: 145 LVNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEIL 204 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 ADE+ + QV+ NLLSN++KF+ G +V + S + +++KD G G+ ++ T+ Sbjct: 205 ADEETIVQVLTNLLSNSIKFSHSGNKVEIYAT-VSNKEIIVAVKDYGKGVPPHKLETIFE 263 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q ++ + G GLGL I ++I+ H G+ + S L G LP Sbjct: 264 RFEQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLPL 315 >gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 502 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 10/273 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + V ++ + ++AE EN AK FL+ MSHELRTP+NA++G +E+ M Sbjct: 100 WFNRMRVKSAVMQSSLEKAEAENRAKGAFLSRMSHELRTPMNAVVGLAELA---GMTEGV 156 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E +E + + S +LL+LIN+ILD+SR+++G E + SL +++ E M++ A Sbjct: 157 PENVREMLVKLRASSHYLLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEA 216 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399 ++ + + D S V D +RQV++NLLSNA KFT GG V + V +G Sbjct: 217 GKRGLICEMEADVDHSRVTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSA 276 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GIA + + +F Q QG GLGLPI++SI+ GG+ ++ Sbjct: 277 DFDFRVTDTGVGIAPEDQERIFDTFEQMGTNYSR-SQGTGLGLPISRSIVQLMGGELRVK 335 Query: 460 SKLREGVE--VIAILPNTRVLNFIPEDNHESTQ 490 S+ G E LP + + N T Sbjct: 336 SEPGHGSEFYFTLTLPLDSLSEECEDGNPMVTD 368 >gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 606 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + + +++AEE + KS FLA+MSHE+RTPLNAI+GFS + Sbjct: 367 ITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFS----SLLEEAEDA 422 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + + LL LI++ILDLS+IEAG +++ + + E + +Q+RA Sbjct: 423 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 482 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +EI + + +D+ + QV+LN ++NA+KFT+ G + + +G S Sbjct: 483 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSE-GSIVIDY-RINGNEVRFS 539 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + + T F + + I G GLGLPI QSI+ GG+ + S+ + Sbjct: 540 VQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESEPGK 595 Query: 465 GVEVIAILP 473 G P Sbjct: 596 GSCFWFTHP 604 >gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 391 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 14/265 (5%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + + A+ +++AE+ +++ S FLA+MSHE+RTPLNAI GF+ Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLANMSHEIRTPLNAITGFA 189 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 EV+ E +Y I + L+ L+N+ILD+S+IEAG E ++ + + + Sbjct: 190 EVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQL 245 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + Q+R + +I +PS + D + QV+ N NA+KFT G Sbjct: 246 LSDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-- 303 Query: 390 HVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + +G+ + Y +KD G GI ++P V F + ++G GLGL I+Q+I Sbjct: 304 -IRLGYEARNTELYFYVKDTGAGIPAEKLPDVFERFVKL----NKDKKGAGLGLSISQTI 358 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 +A GGQ S EG +P Sbjct: 359 VAKLGGQIGADSVEGEGSTFWFTIP 383 >gi|37676880|ref|NP_937276.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|50400926|sp|Q7MD16|LUXQ_VIBVY RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|37201424|dbj|BAC97246.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 857 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238 + +A AT I +F+ N+ + + +I + + A+ S+ Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ ++ FLA MSHE+RTPLN ILG +++++ N+ + + + SG Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 +HLL ++N+ILD S+IE G++ + + + D + + + +EK + P Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412 + D+ + Q++ NL+SNAVKFT GR+ V+ + I + D G GI Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEQFARSEHSILSIQVSDTGIGI 648 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++ ++ F Q G GLGL I ++++ G+ ++S+L +G + Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708 Query: 473 PNTR 476 P + Sbjct: 709 PVEK 712 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 10/274 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 + L +I + E + EL ++ ++ A++ N AKS FLA++SHE+RT Sbjct: 253 VEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEADKANKAKSEFLANISHEIRT 312 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 P+N I+G +++++ + KEY+ + S + LL ++N ILD+S+IE+G++EL Sbjct: 313 PMNGIIGIIDLLKVTELNN----NQKEYLDMLSNSSRLLLGILNTILDISKIESGKFELI 368 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVK 381 ++ + L + +KN+E+F IDP + + DE + QV++N+++NA+K Sbjct: 369 LKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYINFDLIGDEIRLNQVLINIINNAIK 428 Query: 382 FTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 FT G++ V + S+KD G GI E + F Q + G Sbjct: 429 FT-EMGQIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKFIQQDMTYTKKYDG 487 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GLGL I++ I G S +G Sbjct: 488 TGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521 >gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames] gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames Ancestor'] gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne] gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488] gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193] gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465] gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389] gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174] gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684] gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248] gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str. CNEVA-9066] gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western North America USA6153] gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger B] gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum] gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames] gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames Ancestor'] gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne] gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488] gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193] gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389] gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465] gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174] gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684] gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248] Length = 613 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ I + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1125 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 128/272 (47%), Gaps = 12/272 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + + + + A++ N AKS FLA+MSHE+RTPLNAILG E++ + PL Sbjct: 495 MTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHSALNPL-- 552 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++ + I S LL +I ++LD S+IEAG L L+D + + M A Sbjct: 553 --QRDRLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAAH 610 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----G 398 K I + + ++ + D + QV+ NLLSNA+KFT GRV +++ G Sbjct: 611 LKRIALVGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQ-GRVTLSLDVERLPCARG 669 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I + D G GI + T+ +F Q +I G GLGL + Q ++ GG + Sbjct: 670 GMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTIDV 729 Query: 459 RSKLREGVEVIAILPNTRVLNF-IPEDNHEST 489 +S+ +G +P R P +T Sbjct: 730 QSEPGQGSRFTVRMPLDREDPAGAPLVEDAAT 761 >gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52] gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52] Length = 857 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 785 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 12/315 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 A + P + ++ +I L + F+ + ++ S Sbjct: 326 LLAFGATDRPALRGWLAAPLVGRDGRNIGLIQLSDKHEGDFSEEDEAIAVQLAQLASVAI 385 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E L E E A + AEE N K FLA++SHELR+PL AILG+++++ + Sbjct: 386 ENTRLF-EAEQA------AKVDAEEANRLKDEFLATLSHELRSPLTAILGWTKLLRQVDL 438 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G + + I R+ LI ++LD+SRI AG+ + +A+ L ++ I + Sbjct: 439 GAV---RAAHALEVIERNALAQNQLIEDLLDISRIVAGKLRIEAAAVDLAGVIEAAIGTV 495 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + AQ + IE+ +I+P + + D ++QV+ NLL+NAVKFT GGRV V + G Sbjct: 496 RPAAQARAIEVDTEIEPGVPLLMGDATRLQQVVWNLLANAVKFTPNGGRVRVRLSRR-GT 554 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++ D+G GIA +P V F Q + + G+GLGL I + ++ H G Sbjct: 555 AAEVAVSDSGLGIAPHLLPHVFERFRQADSSSTRSHGGLGLGLAIVRQLVELHSGTVSAA 614 Query: 460 SK-LREGVEVIAILP 473 S +G LP Sbjct: 615 SPGEGQGATFTVRLP 629 >gi|163940905|ref|YP_001645789.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163863102|gb|ABY44161.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 163 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 222 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 223 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 275 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L +L +++ I ML+ + +EK+I Sbjct: 276 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 335 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + + DE + QV N+ +N++KF+ GG + V ISI DN Sbjct: 336 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 392 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 393 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 452 Query: 469 IAILPN 474 LP Sbjct: 453 RVELPK 458 >gi|283853366|ref|ZP_06370613.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571234|gb|EFC19247.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 963 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 162/421 (38%), Gaps = 23/421 (5%) Query: 86 NLSLGKKVMNSDIKIGEVYVWR--IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSA 143 + + E + + + V P+ + + Sbjct: 266 RTAALARANGRLTAEVEARREAEARQERALALYKAILESTAEAVMCVGVGPQRDVLAVNR 325 Query: 144 TLLIALSIS----ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF 199 L + +L + A+ A + + + + F Sbjct: 326 RFLELWGLPDDWPSLDHIARGQAIRDRLREPEAAEQAFRDLMRDDTRLDTSCLELGDGRF 385 Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + I + D + + ++ ++ + RAE+ + AK FLA MSHE Sbjct: 386 LERRSGPIIQGEAYIGRVLSYID--VTADKEREASTERAKNRAEDASKAKGDFLAVMSHE 443 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLN ++G +E E + +E ++ + S HLL ++N+ILD S+IEAG+ Sbjct: 444 IRTPLNVVIGLTE----EMLARPASEEQLGHLRTVRESAAHLLGVVNDILDFSKIEAGKL 499 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 L + +V A+ K + ++ L ++ D +RQV LNL+ N Sbjct: 500 VLERLDFDVRRLVAGVAEAFDREARRKGLRFEARVADGLPGTLCGDPGRLRQVFLNLVGN 559 Query: 379 AVKFTAIGGRVHVTVGWTSGR---------GQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 AVKFT G V ++VG G + + D G GI +P + F QG Sbjct: 560 AVKFTEA-GSVSLSVGPAQAAPGAVPDGRIGIEVCVADTGIGIEPDRLPEIFDHFQQGGG 618 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 +I G GLGL I++ I+ GG+ + S+ EG + N PE E+T Sbjct: 619 SIGRRFGGTGLGLAISKGIVERMGGRITVESRPGEGSVFRFTVRLLPPRNAAPEAGEEAT 678 Query: 490 Q 490 + Sbjct: 679 E 679 >gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 1215 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 21/370 (5%) Query: 123 LLTLVEPGTWTPEYLTIYKSA---TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 L G P + + TLL + + A F L +A+ Sbjct: 405 LAIASSLGEAAPRNVVVLPLVHDNTLLGVVELGAFHGFNERELQLLDSVMEGLAVGISVN 464 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 +S ++ L L +SN ++ + ++ +E Sbjct: 465 ISRQRVNELLEQTQQQTE-ELRVQQEELQQSNEELEERAQMLEQQREQIRNKNKEVEEAS 523 Query: 240 KRA-------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + E + KS FLA+MSHELRTPLN+++ S ++ G L+ E + Sbjct: 524 RELQRKADELERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKEGNLS-EKQVGFAR 582 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 ++ +G LLNLIN+ILDLS++EAGR E + +ID++ M + A++K + Sbjct: 583 TMNDAGNDLLNLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFRPLAEQKGLAFQI 642 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-------QYIS 404 K + + D + +Q++ NLLSNA KFT GG V V G + I+ Sbjct: 643 KTGAGVPECISTDMQRTQQILKNLLSNAFKFTHNGG-VEVLAGIPAPGENILPVPALAIA 701 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I+D+G GI+ + V +F QG + G GLGL I++ + G + S+ E Sbjct: 702 IRDSGIGISAEKQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQGDITLASREGE 761 Query: 465 GVEVIAILPN 474 G LP Sbjct: 762 GSVFTVYLPL 771 >gi|121998930|ref|YP_001003717.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590335|gb|ABM62915.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 963 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 30/268 (11%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 R++AE+ AKS FLA+MSHE+RTP+NA++G S+++ + NE +Y+ Sbjct: 375 NRRLKRARQQAEQATRAKSEFLANMSHEIRTPMNAVVGLSQLLLDTEL----NERQLDYL 430 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I RS + LL +IN+ILD SRIE+G+ EL L +++ + A+EK IE+ Sbjct: 431 KKIQRSSRMLLGIINDILDFSRIESGQLELDTGPFDLGEVIDHLATLFSEAAREKEIELI 490 Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISI 405 I P L + D + QV+ NLLSNA+KFT GG V + V ++ + Sbjct: 491 YAIQPELPRMLVGDSLRITQVLTNLLSNAIKFTPRGGTVELEVREEAGAGSAAANIRFQV 550 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAE---------QGVGLGLPIAQSIMANHGGQF 456 +D+G G+ ++ V F Q + + ++ GG Sbjct: 551 RDSGIGMDAEQLERVFQPFVQADASTTRRYGGTGLGLGIG---------RRLVERMGGDL 601 Query: 457 LIRSKLREGVEVIAI--LPNTRVLNFIP 482 + S+ +G LP V P Sbjct: 602 EVTSQPGQGSTFFFTLQLPIGEVQGSAP 629 >gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] Length = 987 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 9/258 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 484 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 539 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ A +K + Sbjct: 540 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAVKKRLT 599 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ ID + + D ++QVI NLL+NA+KFT GG + + G ++D+ Sbjct: 600 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 657 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + +M G + S+ G + Sbjct: 658 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 717 Query: 469 IAILPN--TRVLNFIPED 484 I +P +RV+ P D Sbjct: 718 IIRIPLYNSRVVTLEPRD 735 >gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1263 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 12/328 (3%) Query: 166 SFFPVVVALSTQAIMSM-HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 FP L+ A S + AG + ++ + IL + Sbjct: 793 GLFPDDAVLADMAAESYVGITLWDAAGRPSGLIAVIGRHALKDSRLAESILQMVGGRAGS 852 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E A ++ AE + KS FLA+MSHE+RTPLN +LG +++ + Sbjct: 853 ELERLYAAEALLLAKETAENASRTKSEFLANMSHEIRTPLNGVLGMLQLMTTTPLDT--- 909 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 KEY+ +S + L L+++ILDLSRIEAGR + E +L + + + + A+ Sbjct: 910 -EQKEYVLAAIQSSKRLTRLLSDILDLSRIEAGRLVIQEGEFTLAPLRTSVLELFFVAAK 968 Query: 345 EKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGR----VHVTVGWTSGR 399 +K + + +DP+L + DE +RQ++ NL+ NA+KFT G V + Sbjct: 969 DKGLSLDFTLDPALPPRLVGDEARLRQILFNLVGNALKFTEKGSVTVAAVPLGATDAVPA 1028 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G GI + + F Q QG GLGL I + ++ GG I Sbjct: 1029 RVLFTVTDTGIGIPPDRLRDIFEPFVQAEGTYTRRFQGAGLGLSIVKKLVGLMGGSLEID 1088 Query: 460 SKLREGVEVIAILPNTRV--LNFIPEDN 485 + +G LP R P + Sbjct: 1089 TAPGQGTTCYLSLPFRRTGGAPARPAEA 1116 >gi|206967910|ref|ZP_03228866.1| sensor histidine kinase [Bacillus cereus AH1134] gi|229068950|ref|ZP_04202244.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185] gi|229078584|ref|ZP_04211142.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2] gi|206736830|gb|EDZ53977.1| sensor histidine kinase [Bacillus cereus AH1134] gi|228704728|gb|EEL57156.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2] gi|228714234|gb|EEL66115.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185] Length = 466 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes 10403S] Length = 591 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + D++ + + A EKNI++ + ++ SV D Sbjct: 424 LALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDNGIGIPAKDIDRVFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|157825438|ref|YP_001493158.1| histidine kinase sensor protein [Rickettsia akari str. Hartford] gi|157799396|gb|ABV74650.1| Histidine kinase sensor protein [Rickettsia akari str. Hartford] Length = 497 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQFETNRNLKAQIVKVEQTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++ + +++ Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLALVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + ++ + AD K ++QV LNLLSNAVKFT GG V +T+ + Sbjct: 357 PRADQAEVALMSRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVAITLEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ EG + Sbjct: 477 SKINEGTTITITF 489 >gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 925 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 123/257 (47%), Gaps = 12/257 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I+ A++ R+ A+ N AKS FLA+MSHE+RTPL +LG E++ T+ Sbjct: 425 HDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTTL--- 481 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +Y+ I S LL LI+++LD+S+IE+G+ L +A S ++ + Sbjct: 482 -DPRQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAAS 540 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A K ++I DP L V D +RQV+ NLLSNA+KFT GRV + V Sbjct: 541 ATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFT-EHGRVVLRVRQVQREAE 599 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + D G GIA E + F Q A QG GLGL I+ ++ G+ Sbjct: 600 SSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGLGLSISDRLVRLMSGELQ 657 Query: 458 IRSKLREGVEVIAILPN 474 + S+ G LP Sbjct: 658 VVSEPGLGSSFSVRLPL 674 >gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470] gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470] Length = 664 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 5/243 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F A++SHEL+TPL +I GF+E+I + E K + I +++L Sbjct: 342 AERMRREFSANVSHELKTPLTSISGFAEIISSGMY--QSEEDLKVFGRRILDESHRMMSL 399 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I+ I+ LS++E + + + +VR +++ +A +KNI + + P V+ + Sbjct: 400 IDTIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQADKKNIVVELDMKP--VHVYGN 457 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + ++ +NLL NAVK+ GG V V + +++ D G GI + + F Sbjct: 458 AALLSELAMNLLDNAVKYNHEGGHVTVKLAA-ENGEMVMTVSDTGIGIPVDKQNRIFERF 516 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + + G GLGL I + I+ H G I S EG I LP + E Sbjct: 517 YRAEESRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGEGATFIVTLPAMSESDVSVET 576 Query: 485 NHE 487 +++ Sbjct: 577 DND 579 >gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2] gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10] gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2] gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10] Length = 492 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 9/269 (3%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 L+ +E L V + +R + + K+ F+A++SHELRTPL AI ++E + Sbjct: 223 LALGSEIQALTI---VENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETV 279 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + L+ T KE++ I HL NL+NE+LD SR+E +++ + L D+V Sbjct: 280 YNS-LEELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVES 338 Query: 335 CIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR---VH 390 + ++ A N+ + + + P + D +RQV+LNLL N VK++ V Sbjct: 339 AVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLDNGVKYSKKDAPDKYVK 398 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V + G I ++DNG GI + + F + ++ G GLGL I + I+ Sbjct: 399 VILD-EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVE 457 Query: 451 NHGGQFLIRSKLREGVEVIAILPNTRVLN 479 HGG+ + S++ +G +P R Sbjct: 458 LHGGRIWVESEVGKGSRFFVWIPKDRAGE 486 >gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli APEC O1] gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB and RojN [Escherichia coli APEC O1] Length = 933 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Plautia stali symbiont] Length = 950 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 7/254 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ +++ + Sbjct: 453 RMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTKSLPKGVD----S 508 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ + S ++V K + Sbjct: 509 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSLVVRKRLT 568 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+ + ++ D ++QVI NLL+NA+KFT G + + + ++D Sbjct: 569 LYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHT-GCIILHA-YVKEGYLAFRVRDT 626 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 627 GVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 686 Query: 469 IAILPNTRVLNFIP 482 + +P P Sbjct: 687 VVRIPIYAGQQPAP 700 >gi|320158971|ref|YP_004191349.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus MO6-24/O] gi|319934283|gb|ADV89146.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus MO6-24/O] Length = 857 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238 + +A AT I +F+ N+ + + +I + + A+ S+ Sbjct: 414 PHLKMAAQGATLTGINVPIGEKIFRWNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLA 473 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ AE+ ++ FLA MSHE+RTPLN ILG +++++ N+ + + + SG Sbjct: 474 RREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSV----NDAENLKQVDVLCNSG 529 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 +HLL ++N+ILD S+IE G++ + + + D + + + +EK + P Sbjct: 530 EHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPL 589 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-----WTSGRGQYISIKDNGPGI 412 + D+ + Q++ NL+SNAVKFT GR+ V+ + I + D G GI Sbjct: 590 DCQLHTDQVRLNQIMFNLISNAVKFTPA-GRIEVSFKLEQFARSEHSILSIQVSDTGIGI 648 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++ ++ F Q G GLGL I ++++ G+ ++S+L +G + Sbjct: 649 DESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSI 708 Query: 473 PNTR 476 P + Sbjct: 709 PVEK 712 >gi|119471294|ref|ZP_01613797.1| putative sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] gi|119445760|gb|EAW27043.1| putative sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] Length = 640 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 13/300 (4%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 LDI L + + + L + + ++ L +E++ + +A+ Sbjct: 214 LDIGLGSVAQSINVLLKQVQTALSDNESVQKELKKLQNGLESEVQNRTIALERETLKAQR 273 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K+ FLA+MSHE+RTP+N ++G +++ + + I S LL++ Sbjct: 274 ASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTDL----DGAQHRLSTIIRESAFSLLSI 329 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 +++ILD S+IEAG+ + S+ D + E +L A+++ +++ I P + + Sbjct: 330 LDDILDFSKIEAGKLNIDPIPFSVSDTLEEVTRVLSSVAKKRELDLELSIAPDIPVNLVG 389 Query: 364 DEKGMRQVILNLLSNAVKFTAIG----GRVHVTVGWTSGR----GQYISIKDNGPGIAEG 415 D +RQV+ NL SNA+KFT+ G V ++V + DNG G+ + Sbjct: 390 DSVRVRQVLYNLCSNAIKFTSTDEKTQGHVRISVEVAHNTADHFTLRFCVTDNGKGMTQT 449 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + + F Q +I G GLGL I +S+ G + S G E LP + Sbjct: 450 QLRDIFSPFVQAESSITREFGGTGLGLSICKSLTELMLGTIHVNSHAGIGSEFTVELPFS 509 >gi|237803508|ref|ZP_04591093.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025490|gb|EGI05546.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 462 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 12/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + + + +TR+ AE+ N AKS FLA MSHELRTP+N +LG +++E M + Sbjct: 62 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTRM----TDE 117 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 EY S +HLL +IN+ILD SRIE ++ A +L+D++ A ++ Sbjct: 118 QSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLVDLINASTHAFNHSALQR 177 Query: 347 NIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--TSGRGQY 402 + + KI P L +V D +RQ+++NL+ NA+KFT G+V V W Sbjct: 178 KLSLELKIKPGLEALAVIGDPTRIRQILVNLIGNALKFTEQ-GKVCVEADWAMLDEDHLR 236 Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + + D+G GI + ++ +F Q +I G GLGLPIA+++ GG +S Sbjct: 237 FTCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGAGLGLPIARTLAERMGGTLHAQS 296 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHE 487 + G +P V P D E Sbjct: 297 EEGSGSVFTLQIPL-PVSRNAPVDIIE 322 >gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 933 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGIGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|197303867|ref|ZP_03168902.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC 29176] gi|197297050|gb|EDY31615.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC 29176] Length = 450 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 133/306 (43%), Gaps = 6/306 (1%) Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK 232 +L A + V+ + +A AL + T L + + + + + E+ Sbjct: 145 SLIRTAWNILPVMLVLSVIGIALALFLANWQTKRLMEPVMHLDLEHPLDNVIYPEMVPLL 204 Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 D K E + F A++SHEL+TPL +I G++E++ + + + Sbjct: 205 EAIDRQNKEKEAVANMRKEFSANVSHELKTPLTSISGYAEIMMNGLVRAEDIPG---FSK 261 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I++ + L+ L+ +I+ LS+++ EL + + L ++ RE + L + EK I + Sbjct: 262 RIYKEARRLITLVEDIIKLSKLDEESVELEKEDVELYELTREIVSRLSPQCSEKKISVAL 321 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 +P + + ++I N+ NA+K+ GG V V VG T + IS+ D G GI Sbjct: 322 SGEP--VFCHGIRQILDEMIYNITENAIKYNRDGGSVSVWVGNTLDGPK-ISVSDTGIGI 378 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E + F + + G GLGL I + HG + + S+ +G ++ Sbjct: 379 PEEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGAILHGAKVTVNSEPGKGTKIEIRF 438 Query: 473 PNTRVL 478 P + Sbjct: 439 PKEEKM 444 >gi|168184843|ref|ZP_02619507.1| sensor histidine kinase [Clostridium botulinum Bf] gi|237793673|ref|YP_002861225.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182672106|gb|EDT84067.1| sensor histidine kinase [Clostridium botulinum Bf] gi|229263106|gb|ACQ54139.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 464 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 12/327 (3%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + +++ + + + I+ ++ + LA + + T + Sbjct: 146 IVGVLRFITSLRYVNSDIARISLGFLLIGLVVILISGLVSLFLANSITEPIKELTDVANK 205 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + N K+ S + D+ + ++DE K+ + K+ F++S+SHELRTPL + Sbjct: 206 MASGNFKVKSEKMFDDEFGELSDTLNYMADEIVKK----DQLKNEFISSVSHELRTPLTS 261 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I G++ + ++ E K+ + I + L ++ E+LD S+ +G+ +L++ I Sbjct: 262 IKGWAITLNSN---EVDKEILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEI 318 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 ++ +I+ L+ A I L +++ D ++QV++NLL NA KFT G Sbjct: 319 NICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEG 378 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G V + I +KD G GI + ++P V F +G+ G+GL I Sbjct: 379 GLVELNTKCEEE-YITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN----GIGLSICD 433 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILP 473 I+ H G I S+ +G + LP Sbjct: 434 EIIKLHNGVLHIESEENKGTTISVKLP 460 >gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis Tsiankovskii-I] gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis Tsiankovskii-I] Length = 613 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ I + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVIQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 1149 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 3/275 (1%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L ++N ++ D EL A+ + + KS FLA+MSHELRTPLN+ Sbjct: 439 LEQTNEQLSERTDALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNS 498 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 L ++++ G L+ E K + I+ +G LLNLIN+ILD++++EAG+ E+ Sbjct: 499 SLILAKLLAENGEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETT 557 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAI 385 + +V M Q A K + K++P + ++ D + + Q++ NLLSNA+KFT Sbjct: 558 QVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTER 617 Query: 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 G+V + V + +G G +++D G GIA + + +F Q G GLGL I+ Sbjct: 618 -GQVSMNVSFQAGSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 676 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 + + GGQ + S +G ILP Sbjct: 677 RDLAHLLGGQINVDSSPGQGSVFSLILPERYAAEA 711 >gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1191 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQY 402 + ++D +L ++ D ++Q++LNLL NAVKFT G VH+ V + +G Sbjct: 905 QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRVTTLSQHTRQGLR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLHWV-STLPTVTPPA 1049 >gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 666 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 133/238 (55%), Gaps = 9/238 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 R++AE+ + KS FLA+MSHE+RTPL AI+GFS++++ + + +Y+ IHR+ Sbjct: 287 ERQQAEQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESNL---DESERLQYVNIIHRT 343 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+HL +IN+ILDLS++EAG E+ ++L ++ + I++ R +K + + Sbjct: 344 GEHLTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNRRGI 403 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEG 415 + + D +RQ++ N++ NA+KFT G +V + + SG ++KD G GI+ Sbjct: 404 VPDMIRTDPLRLRQILTNIIGNAIKFTDQG---YVRMTYEISGSNLLFTVKDTGVGISSA 460 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR-SKLREGVEVIAIL 472 + + +F Q ++ +G GLGL +++ + GG + S+ +G I + Sbjct: 461 QRSNLFQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKI 518 >gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15] gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15] Length = 387 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L+ Q I + I + F T + K+ + I + Sbjct: 89 LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 148 Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 L+ +K A++ N K FLAS++HELRTPL I G++++I ++ + K Y Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 205 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I H+ L+ ++ +L+++E + ++ +L D+++ + +Q EKNI I Sbjct: 206 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 265 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 L + DE+ QVILNLL+NA + + ++ V V Q I +KD G Sbjct: 266 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 323 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P + F + + A G GLGL I + I+ H G ++S+L G Sbjct: 324 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 383 Query: 471 IL 472 +L Sbjct: 384 LL 385 >gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39] gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 12129(1)] gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39] gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 12129(1)] gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae LMA3894-4] Length = 857 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1194 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ T + T + Y I R+G Sbjct: 814 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDATQRSYTESIRRAG 869 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 870 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 929 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 930 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 988 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GG + S+L G + LP Sbjct: 989 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048 Query: 476 RVLN 479 V + Sbjct: 1049 WVAS 1052 >gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] Length = 571 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +S+F+A++SHEL+TPL +I GF+E + ++ET +++ I L L+ + Sbjct: 350 MRSQFVANISHELKTPLTSIKGFAETLR----YVDDDETRNKFLSIIDEESDRLARLLED 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 IL L IE R + ++ + + + ++L +A++K +EIF + + + D+ Sbjct: 406 ILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCV-LMGDKDK 463 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 +Q++LNL+SN+VK+T GG+V V + S + I+DNG GI+ ++P + F + Sbjct: 464 FKQMLLNLVSNSVKYTEKGGKVRVE-SYNSDMNLILVIEDNGIGISAEDLPRIFERFYRV 522 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 A G GLGL I + I+ G+ + S+L G +++ +P Sbjct: 523 DKARSRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVIAIP 568 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length = 1389 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 154/390 (39%), Gaps = 23/390 (5%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + + G LV P + + + ++ + + + Sbjct: 198 FTLTYLFDGA--AAARLVTSTGIAPGHPAAPQHVLVADPAAVWPAAAAARGETLLVDLAG 255 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNVKILSCQAEKDD 223 + L + L + + F ++ V +++ A Sbjct: 256 DALPTGAWPRPPNQALVVPLPQQGSAPMGFLVAALNRYRPLDERYRGFVDLVAGHASTRV 315 Query: 224 LIAELEVAKSLSDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L A A+ +RAEE + AK+ F +++SHE RTPL I G + + G Sbjct: 316 LSARGYRAQQ------RRAEELAELDRAKTIFFSNISHEFRTPLTLIAGPVQELRTRLAG 369 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 +E + IHR+G L L+N +LD SR+EAGR + + L + RE + + Sbjct: 370 A--EPALREEVEVIHRNGLRLGRLVNALLDFSRLEAGRMQARYEPVDLAALTRELASVFR 427 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 ++ + P V+ D +V+LNLLSNAVKFT G + V G Sbjct: 428 SAIEKAGLRFDVDCPPLPFPVYVDRGMWEKVVLNLLSNAVKFTFD-GAITVRARAL-GGH 485 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +++ D G GIAE E+P + F + A + +G G+GL + + +++ H G+ S Sbjct: 486 AVVTVADTGVGIAEAEMPRLFERFHRVENARSRSSEGSGIGLALVKELVSLHAGEITALS 545 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP+ R +P D + Q Sbjct: 546 AENLGTTFTIRLPSGRA--HLPADAVTADQ 573 >gi|229134078|ref|ZP_04262898.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196] gi|228649413|gb|EEL05428.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196] Length = 448 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L +L +++ I ML+ + +EK+I Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + + DE + QV N+ +N++KF+ GG + V ISI DN Sbjct: 326 AVEFDVPD--IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTV 442 Query: 469 IAILPN 474 LP Sbjct: 443 RVELPK 448 >gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 463 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 152/346 (43%), Gaps = 25/346 (7%) Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 ++ F L L ++ ++ + + + +L + + + ++ Sbjct: 126 MTAFPLIRDDELDNALILYMELSKISEPFQPIRLMITFLLVLMIVNLLLFGKQIIDTIIQ 185 Query: 214 ILSCQAEKDDLIAELEVAK-----------SLSDETRKRAEEE---NLAKSRFLASMSHE 259 L + A+ + + L+D AE + FLA++SHE Sbjct: 186 PLIQMKRASQVYAQGDFSHRIPIVYDDEIGELADTLNSMAESLGLVEEQRKEFLANVSHE 245 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPL+ I G++E+++ ET+ + +T +Y I L L+ ++LDL+++E Y Sbjct: 246 LRTPLSYIRGYTEMLQDETL---DEKTRAQYYDIIENETNRLQRLVTDLLDLAQLERDSY 302 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +++ + ++ + + L+ A+ K + I +D L + D + QVI NLL NA Sbjct: 303 PMTKEPVVYSQVLEDVLYRLEPIARAKGVTIESDLDFDLI-ILGDHDRLEQVIGNLLDNA 361 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +++T G +HV + I+D G GI + ++ + F + + + + G G Sbjct: 362 LRYTDAGKTIHVKTFAETEYAIT-EIRDEGRGIPKEDLDKLTERFYRVNKSRTRKDGGTG 420 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 LGL IA+ I+ H G S++ +G V LP +P+D Sbjct: 421 LGLAIAKHIIERHEGSLHFSSEVGQGTTVTVGLPL------LPDDE 460 >gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 459 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 146/314 (46%), Gaps = 14/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L + + + P+ + + + + I+ + LS I H+ + Sbjct: 157 LIFDMGIILAPLALIIVILTVWIGRKIIIA----ITKPLSQMEQIANHMATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ ++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGRAFNKMAT----SLENEDIKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 ----AKGKQEKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLQKQPIVFAQLIEDVVET 324 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + + EK +EI ++DP + V DE M+QV+ N+L NA+++T G++ V + Sbjct: 325 YEWKCIEKQVEISMELDPDII-VMIDEDRMQQVLHNILDNAIRYTNEKGKITVQLQKLKK 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Q + I D G GI + + F + A G GLGL I + I+ H G++ I Sbjct: 384 DCQ-LKIMDTGIGIEREHVEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHDGKWKI 442 Query: 459 RSKLREGVEVIAIL 472 S+ +G V+ L Sbjct: 443 ESEKGKGTTVMIQL 456 >gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] Length = 618 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 14/243 (5%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +F++++SHELRTPL ++ + E + ++ + ++ +IN++L Sbjct: 379 QFVSNVSHELRTPLTSLRAYIEALNEGAWKDPTIAPQ--FLQVTQEETERMIRMINDLLS 436 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363 LSR++ G ++ ++L D V + + + I +++ V Sbjct: 437 LSRMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELGNQALWVEI 496 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QVI N+++NA+K++ GG + V + + +SI D G GI ++ + Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGGVITVRL-VQNQNHVILSISDQGLGIPRKDLGKIFDR 555 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 F + A A+ G GLGL IA+ I+ H G+ S G LP + E Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLP----YESMSE 611 Query: 484 DNH 486 ++ Sbjct: 612 EDD 614 >gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1119 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 142/324 (43%), Gaps = 12/324 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEK 221 + L +V+A + S V+ L + + + Sbjct: 355 IILCLLALVLATVIGILTSRWVVQPILKLKDVATALSEGEFNQKIELNRDDEVGELAKAF 414 Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + +L+ + +L K+ E + K FLA+ SHELRTPLN I+G +E + G Sbjct: 415 NSMAFQLQNSFNLLTIKNKQLENLDKLKDEFLANTSHELRTPLNGIIGITESLIDGVAGE 474 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 L++E K + + SG+ L NLIN+ILD +++ EL + + ++ I + Sbjct: 475 LSSE-VKNNLYLVIFSGKRLSNLINDILDFYKLKHRNIELKLKPVGVREVAEIVINLSSS 533 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG- 400 K ++I I + V ADE ++Q+ NL+ NAVKFT G++ V+ + Sbjct: 534 MIGTKPLQIINSISYDIPFVDADENRLQQIFYNLVGNAVKFTDS-GKIEVSAKVLENQLE 592 Query: 401 --------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 I++ D G GI ++ + SF Q + + G GLGL I + ++ H Sbjct: 593 NSSNNVSLLEITVSDTGIGIPSDKLDQIFESFEQANGSTSREYGGTGLGLAITKKLVELH 652 Query: 453 GGQFLIRSKLREGVEVIAILPNTR 476 G + S++ G + +P ++ Sbjct: 653 KGSLCVLSEVGVGSQFKFTIPISK 676 >gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 110-3] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|42780488|ref|NP_977735.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42736407|gb|AAS40343.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 466 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + VT+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIVTLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 9/255 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ +++ + + Sbjct: 452 KMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL----PQGVES 507 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ +K + Sbjct: 508 LVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVVKKRLT 567 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ ID + ++ D ++QVI NLL+NA+KFT GG + + V + ++D Sbjct: 568 LWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQV-FVKDGYLAFRVRDT 625 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 626 GVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQF 685 Query: 469 IAILPN--TRVLNFI 481 + +P +V+ + Sbjct: 686 VVRIPLYNAQVMTPV 700 >gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 842 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 5/245 (2%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 RK E K+ F++++SHELRTPL +I G ++E +G + + + + Sbjct: 345 ERKAVE---RMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDI-PPQALDMVRIARTN 400 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 + L+ LIN+ILDL ++EAG+ EL S D+V ++ A + + ++ Sbjct: 401 TERLIRLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVT-G 459 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V AD + QV+ NL+SNAVKF+ G V V VG S+ D GPGI++ + Sbjct: 460 TPQVKADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQR 519 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F Q + ++ G GLGL I+Q+I+ HG + + S+ G L + R Sbjct: 520 ARLFGRFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTLESARP 579 Query: 478 LNFIP 482 + P Sbjct: 580 ASVTP 584 >gi|281207530|gb|EFA81713.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1347 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 12/246 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 +D ++AE N AK FL ++SHEL+TP+N I+ E++E + +E++ Sbjct: 593 EADVALRKAEAANEAKVVFLTTISHELKTPINGIMASCEILERSNLDAG----QREFLDA 648 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I S +L +L+ +ILD S++EAG+ EL SL+ ++ + + M+ AQ K +++ Sbjct: 649 IRMSSNYLYSLVLDILDYSKMEAGKMELVLDDFSLLKMLEDTLSMVSKNAQPKGLDLVGF 708 Query: 354 IDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------WTSGRGQYISIK 406 +D ++ V D +RQ++LNL+SNA+KFT G++ + V T ++ Sbjct: 709 VDSNVPVLVHGDATRVRQILLNLISNAIKFTDE-GQIKIRVKLDREITETKEYQLLFEVE 767 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI I + T F Q + QG GLGL I++ + G+ + S G Sbjct: 768 DSGIGIKNEHIVLLFTPFSQIDSSNSRKYQGTGLGLSISKRLANMMDGEVFVNSDFGIGS 827 Query: 467 EVIAIL 472 + Sbjct: 828 TFSFTI 833 >gi|209694498|ref|YP_002262426.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] gi|208008449|emb|CAQ78615.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] Length = 745 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 17/345 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH------LFKSNV 212 L S L A++ + + + L LS+ ++ L + Sbjct: 277 LEQRFIYSVVLSFFVLIAIAVLVRGLFEHRILLALNALLSYAKSVSKKNGNKHYLGSGIL 336 Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + A+ + + EL AK S + + AE+ L KS FLA MSHE+RTPLN ILG S Sbjct: 337 EFDQIGAKLEGIFIELIEAKEESHKAQAAAEKLTLVKSDFLARMSHEIRTPLNGILGISG 396 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 +++ + K+ I IH+ G+HLL ++N+ILD S+IE + ++ L D++ Sbjct: 397 LLKQAQLPL----EQKKQIQIIHQGGEHLLAVLNDILDFSQIEQDKLNINFEEFVLDDVL 452 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + EKNI + + + + D+ + Q++ NLLSN VKFT G+V + Sbjct: 453 DTINAIYTPLCMEKNITFNLNNNIDNNVILYTDKVRLTQILFNLLSNGVKFT-EIGQVTL 511 Query: 392 TVGWTSGRGQYI---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 ++ S GQ ++D G GI +V F Q G GLGL I + + Sbjct: 512 SLNLESKNGQIFLCFDVEDTGVGIDIENQASVFDPFIQVESTGTRKFGGSGLGLAIVKQL 571 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNTRVL--NFIPEDNHESTQY 491 + G + S G LP + +P +Y Sbjct: 572 LHLLNGSITVVSSPGLGTSFTIRLPVEVIEYKKELPLAASSHNEY 616 >gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] Length = 575 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 151/339 (44%), Gaps = 10/339 (2%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 ++ +LI + + S + A+ + Sbjct: 217 VMFFLLIMLILGIAVYFALSWMVVRPLESLGASLRAVDADPSRAHTAAAPIGVFDSREMD 276 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR-------KRAEEENLAKS 250 + F + +V + +++ + +L A E R +R + +N K+ Sbjct: 277 TLFAHFDSMSSALSVLYGNLESQVGERTDQLRTAMEQLQEQRAHVERVNERLKRDNQYKT 336 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA +SHELRTPL +I+ F+++++ P + + + +I ++GQ LL +++ +L+ Sbjct: 337 DFLAIVSHELRTPLTSIIAFADLLDTHV--PRDGGESRRQLDEIEKNGQILLEMVDNVLE 394 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +RI++GR E+S I + D+V + L A +K I + + + V +D + +R+ Sbjct: 395 TARIQSGRDEVSIELIDVSDLVGMVVQSLAPLASKKGIALTSDVSSEVPLVMSDWEKLRR 454 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 ++ NL++NA+KFT GG V V V I ++D G GI + + F Q ++ Sbjct: 455 ILSNLVNNAIKFTGEGGSVAVAVARDAEEGFVRIEVRDTGIGIPADKHELIFERFTQENM 514 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 + G GLGL + + + GG + S+ EG E Sbjct: 515 STARRFGGSGLGLSLVKDLAGILGGDVSLTSRPGEGSEF 553 >gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27] gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27] Length = 857 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|294500028|ref|YP_003563728.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294349965|gb|ADE70294.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 460 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 135/311 (43%), Gaps = 16/311 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + Q + L M+ ++ F T +L K VK+ + +E+ Sbjct: 155 IQLQFGEMRIFFSVILLVMIILSILFVLISTRYLVKPIVKLTEATKQVAKGKYNVELYVK 214 Query: 234 LSDE----------TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 DE K E+ + F++++SHE+++PL +I GFS+ + L+ Sbjct: 215 RRDEIGALASHFSEMAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRS---AHLS 271 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 +E EY+ I + + +L ++L L+ ++ + + + +++ + Sbjct: 272 DEQRNEYLSIIEEESRRMSSLSKQLLTLASLDKESQNIDKIPFDVAAQIKQVL--FMTEW 329 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + E+ ++D + + D+K + QV NL++N+VKFT GG + + V ++ Sbjct: 330 SWREKELAIEMDLPSTMISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRVQM-EDTHCHV 388 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 +D G G+++ +P + F + A E GLGL I + I+ HGG + S+ Sbjct: 389 EFQDTGIGMSKESLPHIFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKG 448 Query: 464 EGVEVIAILPN 474 +G LP Sbjct: 449 KGSTFHVYLPK 459 >gi|228964357|ref|ZP_04125474.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795341|gb|EEM42831.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis serovar sotto str. T04001] Length = 466 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 +S+ +G VI L Sbjct: 444 KSEKDKGTTVIIKL 457 >gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82] gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15] gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O83:H1 str. NRG 857C] gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UTI89] gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89] gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli IHE3034] gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252] gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201] gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201] Length = 387 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L+ Q I + I + F T + K+ + I + Sbjct: 89 LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 148 Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 L+ +K A++ N K FLAS++HELRTPL I G++++I ++ + K Y Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 205 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I H+ L+ ++ +L+++E + ++ +L D+++ + +Q EKNI I Sbjct: 206 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 265 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 L + DE+ QVILNLL+NA + + ++ V V Q I +KD G Sbjct: 266 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 323 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P + F + + A G GLGL I + I+ H G ++S+L G Sbjct: 324 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 383 Query: 471 IL 472 +L Sbjct: 384 LL 385 >gi|166712857|ref|ZP_02244064.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1191 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402 + +D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 905 QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAVLPQHTQQGIR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 L +G + LP V + +P + + + Sbjct: 1024 LGQGACFVVELPLRWV-STLPAVTPSAVRAR 1053 >gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] Length = 863 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 10/257 (3%) Query: 224 LIAELEVA--KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L E E + + A+ + AKS FL+ MSHE+RTP+NAI+G + + Sbjct: 321 LFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRI--- 377 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + ++ + + +HLL LIN+ILD+S+IE+ + LS L + V +++ Sbjct: 378 SDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEKFDLQETVHSIYNLIEP 437 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A+EK + + + + D+ + QV +N+++NAVKFT GG+V + + Sbjct: 438 QAKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTPRGGKVTMKLSEKQTSP 497 Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++I I DNG G+ + + V F Q + I G GLGL I +++ GG Sbjct: 498 EHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGNI 557 Query: 457 LIRSKLREGVEVIAILP 473 ++S+ +G LP Sbjct: 558 DVQSEEGKGSTFTIDLP 574 >gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL N3-165] gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL N3-165] Length = 591 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA--DEK 366 L LSRIE + + + +++ + + A EKNI++ + ++ SV D Sbjct: 424 LALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVII-PEKTIPSVTIETDRD 482 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEAIIEVTDNGIGIPAKDIDRVFERFYR 541 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 A G GLGL I + ++ N GG+ + S+ G LP Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|285018412|ref|YP_003376123.1| two-component system sensor protein [Xanthomonas albilineans GPE PC73] gi|283473630|emb|CBA16133.1| putative two-component system sensor protein [Xanthomonas albilineans] Length = 1310 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 5/306 (1%) Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 +VA + I++ + + + + L +S ++ E+ L+ Sbjct: 840 IVACCSTPIIASDGDVLGSVALYFPFVHYPNAHEQELARSASRLAGIIIERRKTDLRLQQ 899 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 R AE + K FLA++SHELRTPLNAILG++ +++ ET + + + Sbjct: 900 LLDAEQNARSEAERASRMKDEFLATLSHELRTPLNAILGWARLMQQET--EVLEKDISKG 957 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I RS +I+++LD+S I +G+ L + + L ++ E I + A++K ++I Sbjct: 958 LQVIERSAHTQAQIIDDLLDMSAILSGKVRLEPTELDLRTLIGETIDSARPSAEDKGVDI 1017 Query: 351 FQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 D + L D ++QV+ NL+ NA+KFT G++ VT+ S I + D G Sbjct: 1018 VLVADSTPLPPYLGDTVRLQQVLTNLIGNAIKFTPSTGKITVTLS-NSSTHMRIEVSDTG 1076 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468 GI +P V F Q + + G+GLGL IA+ + H GQ + S L G Sbjct: 1077 LGIEPLFLPHVFDRFSQADASSTRSAGGLGLGLSIAKQLTELHHGQLSVISDGLGLGSTF 1136 Query: 469 IAILPN 474 +LP Sbjct: 1137 TLLLPR 1142 >gi|255280413|ref|ZP_05344968.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469] gi|255268878|gb|EET62083.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469] Length = 442 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 143/308 (46%), Gaps = 12/308 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 + + L L M + + L KS + + A+ D K + Sbjct: 141 AGSVWSFLLPLIPVLLFMGMALFLVCLVLAHFLTKSIISPIEDMAQHMDDEEYEIAYKEM 200 Query: 235 ---SDETRKR---AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 D +K+ + + + F A++SHEL+TPL AI G+SE+IE E Sbjct: 201 KPFLDMIQKQHSDIVKSSQMRQEFTANVSHELKTPLTAISGYSELIESGIA---TKEDTV 257 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + +IH+S LL LIN+IL LS +++ L + + L ++ +C+ M+Q+ A++ ++ Sbjct: 258 RFSAEIHKSSNRLLMLINDILRLSELDSSEDVLVKETVDLYELAEKCVDMMQVNAEKHHV 317 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + A+ + + +V+ NL SNA+++ G V +TVG G ++++D Sbjct: 318 TLRL--AGGSCFIQANREMIEEVMYNLCSNAIRYNVPDGSVVMTVGM-EGNHAVLTVEDT 374 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E + + F + + + G GLGL I + +A HG + + SK G + Sbjct: 375 GIGIPEEDQKRIFERFYRVDKSRSKSTGGTGLGLAIVKHAVAKHGAEIGLWSKTGVGTRM 434 Query: 469 IAILPNTR 476 + P ++ Sbjct: 435 RVVFPESK 442 >gi|153864505|ref|ZP_01997387.1| two-component system sensory histidine kinase [Beggiatoa sp. SS] gi|152146000|gb|EDN72613.1| two-component system sensory histidine kinase [Beggiatoa sp. SS] Length = 529 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 5/246 (2%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 +++AEE +AKS+F A+MSHE TP+N I+G+ E++E E ++ + ++H + Sbjct: 18 KQKAEEAKMAKSQFFANMSHEFGTPMNTIVGYPEMLEEEIKECERASLLQD-VKNVHAAA 76 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 +HLL LI+ ILD+S+IEAG+ +L L +++ + +Q + K + D +L Sbjct: 77 KHLLGLIDGILDISKIEAGKMQLYSERFDLKGMIQNTLTTIQPLIENKANTLHLLCDKNL 136 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEG 415 V+ D MRQ++ NLLSNA KFT G + + V G I D G G+ Sbjct: 137 GEVYTDLTKMRQILFNLLSNASKFTER-GIITLEVRRETKKEGDWITFRITDEGIGMTTE 195 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + F Q + G GLGL I + GG + S+ +G I LP Sbjct: 196 QQANLFQVFTQADASTSRKYGGSGLGLAITKYFTQMLGGTINVESEFSKGSHFIVHLPTH 255 Query: 476 RVLNFI 481 V+ + Sbjct: 256 LVVKNL 261 >gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 614 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 8/236 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F++++SHELRTPL ++ + E + + E +++ ++ Sbjct: 372 EKIDNERKEFVSNVSHELRTPLTSMRSYLEALLDGAW--KDPEIAPQFLKVTQEETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE-----KNIEIFQKIDPS 357 +I ++LDLSR+++G+ L +++ ++ I ++ Q K+ I + Sbjct: 430 RMIKDLLDLSRMDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDFSIKRNFTDR 489 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D M QV+ N+++NA+K++ GG + + T+ +SI D G GI + ++ Sbjct: 490 QLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGLVETND-SVVLSISDEGLGIPKRDL 548 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 V F + A + G GLGL I++ ++ H G+ S +G LP Sbjct: 549 ANVFDRFFRVDKARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTFYISLP 604 >gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 945 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L+ ++ + + +AEE + KS F+A+MSHE+RTPLNAI+GFS ++ E Sbjct: 701 ADIDNLKKIEANLIQAKAKAEESDRLKSAFIANMSHEIRTPLNAIVGFSNLLASEM--DF 758 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + E EY I + LL LIN+ILD+S+IEAG + +E+ + L +E + QL+ Sbjct: 759 SEEDKAEYTRIISVNNDLLLQLINDILDISKIEAGVMDFTENTVELNQFFQEIESVFQLK 818 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ F ++ D + QVI N L+NA+KFT G + Y Sbjct: 819 AKTGIEIKFIPEQAEEYAIKIDRIRLNQVISNFLNNALKFTRQ-GHIFFGYRLREKD-IY 876 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 ++D G GI + + +V F + + QG GLGL I +I+ G+ + S+ Sbjct: 877 FYVEDTGIGIPKDQQASVFRRFVKL----NNFIQGTGLGLSICSTIIDKFNGKIGVESEP 932 Query: 463 REGVEVIAILPN 474 +G +P Sbjct: 933 EKGSTFWFTIPR 944 >gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 1056 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 12/258 (4%) Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + + K A+ + N K FLA +SHEL+TPL A+LG S ++ + +G L NE Sbjct: 339 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL-NER 397 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 Y G IH+SG+HL++++N+ILDL+R+E G+ EL+ S + + ++ + + + Sbjct: 398 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTEARAVHTQT 457 Query: 347 N--------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 E I+P L + ADE +RQ++++LL NA KFT G+V + V Sbjct: 458 GRKGESLPSHEFSLTIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNRW-E 516 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GI + + + F Q + +G GLGL + +++ HGG Sbjct: 517 GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGDVSF 576 Query: 459 RSKLREGVEVIAILPNTR 476 S+ +G + +LP + Sbjct: 577 LSREGKGSQFTLLLPPSP 594 >gi|171912848|ref|ZP_02928318.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 693 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 5/286 (1%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + A Y + S V + + E EV E R A+ N K Sbjct: 239 IWVHAKGRGVYDSRGNIISVVGTIGDATSRKHRDREREVLLVKEREARAEADRANRIKDE 298 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA++SHELR PLNAILG++ ++ E+ P + + I R+ Q LI ++LD+ Sbjct: 299 FLATLSHELRNPLNAILGWASILRTESSDP---DELAAGLDVIERNTQLQAKLIADLLDM 355 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 SRI +G+ L +L+ + RE + +++ A+EK I + D V D ++Q+ Sbjct: 356 SRILSGKVHLDLKPTNLLSLAREGVETIRIMAEEKRITVTTPGDAPPVMVSGDSARLQQI 415 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 I NLL+N VKFT GG + +++ + + D G GI +P V F Q + Sbjct: 416 IWNLLTNGVKFTPPGGSLDLSI-ICGQDRAELVVTDTGTGIDPQFLPHVFDRFRQADASS 474 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTR 476 G+GLGL I + + H G + S + +G LP R Sbjct: 475 TRKYGGLGLGLSIVKHLTEMHHGTVQVFSPGVGKGATFKVTLPLLR 520 >gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 894 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 10/257 (3%) Query: 224 LIAELEVA--KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 L E E + + A+ + AKS FL+ MSHE+RTP+NAI+G + + Sbjct: 353 LFDETEQIAYQKNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRIG-- 410 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + + ++ + + +HLL LIN+ILD+S+IE+ + LS L + V +++ Sbjct: 411 -DKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYENFDLQETVHCIYNLIEP 469 Query: 342 RAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +A+EK + + + D + QV +N+++NAVKFT GG+V + + Sbjct: 470 QAKEKGVSFEIITNDIRQECLVGDPLRVNQVFINVIANAVKFTPRGGKVTMRLSEKHTSP 529 Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 ++I I DNG G+ + + V F Q + I G GLGL I +++ GG Sbjct: 530 EHIHLRCVISDNGIGMKKEFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGSI 589 Query: 457 LIRSKLREGVEVIAILP 473 ++S+ +G LP Sbjct: 590 DVQSEEGKGSTFTIDLP 606 >gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UM146] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|266622910|ref|ZP_06115845.1| putative His Kinase A domain protein [Clostridium hathewayi DSM 13479] gi|288865336|gb|EFC97634.1| putative His Kinase A domain protein [Clostridium hathewayi DSM 13479] Length = 614 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 13/278 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + ++ +L + AE N AK+ FL+ MSHE+RTP+NAILG + + Sbjct: 263 TQLREMQRKLTEQTEALKDALAVAEHANQAKTDFLSRMSHEIRTPMNAILGMTTIAAAYI 322 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++ + I S +HL+ LIN++LD+S+I G+ ++ L +V + Sbjct: 323 ---DDQRRVEDCLEKIGYSSKHLMALINDVLDMSKISEGKVRIAHEVFDLETVVESISSI 379 Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 + +A + + ID S + + D + Q++LNLLSNA+KFT GG V + + Sbjct: 380 IYPQAAARGLTFQVPLIDLSNTVMIGDSLRLNQILLNLLSNALKFTPAGGTVRLEIRQLQ 439 Query: 398 GRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + ++ D G G+++ + + F Q + G GLG+PI ++++ G Sbjct: 440 RKEDRIRLRFTVLDTGIGMSDAFLERLFVPFEQEDNRVAQNSGGTGLGMPITKNLVTLMG 499 Query: 454 GQFLIRSKLREGVEVIAIL----PNTRVLNFIPEDNHE 487 G ++S++ +G L P + IP+ HE Sbjct: 500 GTITVKSEVGKGTVFTIELDFDTPLDKD-RVIPQKTHE 536 >gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 1128 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 99/402 (24%), Positives = 165/402 (41%), Gaps = 33/402 (8%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + ++V A G+ ++ L LT+ + A+ I + + + Sbjct: 317 KHLVIVPVKADGVVNAVIELGFLHPVDDRVLTLLEQASSTIGVGLRSARYRAQLQDSLEE 376 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + L + L ++ ++ QAE + + Sbjct: 377 TQ------------RQSEELQVQSEELRVSNEELEEQGRALKETQTRLEQQQAELEQTNS 424 Query: 227 ELEVAKSLSDETR--------------KRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +LE + + R + E+ + KS FLA+MSHELRTPLN++L S+ Sbjct: 425 QLEEQAQMLETQRDDLERTSAAVALKARELEQASQYKSDFLANMSHELRTPLNSLLILSK 484 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++ G L E K + I SG LL+LIN+ILDLS+IEAG E+ ++SL + Sbjct: 485 LLSDNPNGNLTAEQVK-FAQTIESSGNDLLSLINDILDLSKIEAGHIEVRPESVSLQRLT 543 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + A + ++ ++ V D + + QV+ NLLSNA KFT GG V + Sbjct: 544 GDLRQLFNPVADSRKLDFAIEVAADCPLVVETDRQRLEQVLKNLLSNAFKFTEKGG-VRL 602 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + S ++KD G G++ + + +F Q I G GLGL I++ + Sbjct: 603 EIKAASNDRIAFAVKDTGIGVSRDQQEAIFEAFRQADGTISRKYGGTGLGLSISRQLSRL 662 Query: 452 HGGQFLIRSKLREGVEVIAILP----NTRVLNFIPEDNHEST 489 GG + S+ EG +P RV P E+ Sbjct: 663 LGGSITLESQPGEGSVFTVTIPVAYDPARVAPREPPRLAETP 704 >gi|218896332|ref|YP_002444743.1| sensor histidine kinase [Bacillus cereus G9842] gi|218542783|gb|ACK95177.1| sensor histidine kinase [Bacillus cereus G9842] Length = 466 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli CFT073] gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073] gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU 83972] gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] Length = 478 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 132/362 (36%), Gaps = 22/362 (6%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIA-------LSISALSNFMLPYAVFLSFFPV 170 G W L + L A ++I + V Sbjct: 121 GEVWATAQLPQGDRPPLRLLVYGVLVKAPTAPLNLETWVAIFVAKPLRPLESTLAELSRV 180 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + S + VL L L + L D++ A Sbjct: 181 FLFTSIFVLTLGGVLTYLLVARTLEPLEAIAQKAEEVSIKGRTRLPEPETHDEVSALARA 240 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + + R E +SRFLA SHELRTP+ AILG + NE +E Sbjct: 241 LNRMLE----RLEHAFQTQSRFLADASHELRTPITAILGHVGYLLRR---TPVNEVQRES 293 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I R G+ + L+ ++L+L+ E G + + L +++E + + Sbjct: 294 LETIRREGERMTKLVTDLLELAGSE-GGWRFEVRPVELRGLLQEIASEYAPTFEGE---- 348 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 P V D++ + QV NL++NAVK A R+ + V + + DNGP Sbjct: 349 IVLEAPDEVWVEGDDERLHQVFANLIANAVKAGAT--RITLRVRR-PPGRVIVQVSDNGP 405 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI +P + F + A A G GLGL I ++I+ GG+ + S++ EG Sbjct: 406 GIPPEHLPHLFERFYRVDKARDRAAGGSGLGLAIVKAIVEALGGEVWVESQVGEGTTFSV 465 Query: 471 IL 472 L Sbjct: 466 SL 467 >gi|217967622|ref|YP_002353128.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336721|gb|ACK42514.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 350 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FL + SHELRTPL +I ++ + + +E Y E+ + + + + L++ +L+ Sbjct: 122 EFLGNASHELRTPLTSIQILIDLFSEKKIT--LDEIYNEFFPHLRKEVERMSKLVSNLLN 179 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 LSR+EAG +L ++L +IV E I L +KN+E+ KI L + AD + + Sbjct: 180 LSRLEAGVIDLQLKEVNLTEIVMEVIDRLTPHISKKNLEVNLKIPEKLV-INADPQHLDT 238 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ N++ NAVK+T GG + + V + I+D G GI E ++ + F + S + Sbjct: 239 IVFNIVENAVKYTPQGGLIEIGVNENEDN-VILWIRDTGIGIPEKDLNRIFDRFYRVSKS 297 Query: 431 IKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + GLGL I + ++ HG + SK+ +G + I+P + Sbjct: 298 RTNEDGFSTGLGLSIVKKLIERHGWTIRVESKVNKGTKFEIIIPKRK 344 >gi|311746257|ref|ZP_07720042.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1] gi|126576490|gb|EAZ80768.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 845 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 9/305 (2%) Query: 188 SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 A LA + FF + IL K+ + L + ++AE+ Sbjct: 292 VAAYGLANDVIFFLVLVVAFAVLGSAILVYSILKEIRLNRSYQENLLLSQ--QKAEQLAK 349 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 +K FLA+MSHE+R PL+ I G+ V+E + + Y+ I + Q L+ ++++ Sbjct: 350 SKQEFLANMSHEIRNPLHVIQGYQSVLEKSHLDT----AQQSYLRMIGFASQTLMEIVDD 405 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEK 366 +LD S++EAG+ +L + +++ +L+A EKN+ +D P + D+ Sbjct: 406 VLDFSKLEAGKLKLEFTPFDPVNLFGSLQNFFELQADEKNLGFHWSVDLPEDKWLLGDQL 465 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++Q++ NLLSNA KFT G ++V V W + IKD G G++E + V F Q Sbjct: 466 RLKQILNNLLSNAFKFTEE-GSINVGVKWVE-GILTVEIKDTGIGMSEEVLEKVFLEFDQ 523 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +I G GLGL I ++ G+ SK+ G + LP I + + Sbjct: 524 ADNSISRKFGGTGLGLAIVHRLVHLMHGEINTSSKVGVGTCISISLPMETTKVQISDSIN 583 Query: 487 ESTQY 491 E + Sbjct: 584 EEFNF 588 >gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 761 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 15/300 (5%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK--RAEEENLAKSRFLA 254 L + + L + + AE+ + A S + + +A+E N K FLA Sbjct: 340 LGTIVFASTQLGRYYTTVDLAMAEQLA-----QRAASAIENAQLYWQAQEANRIKDEFLA 394 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +SHELRTPLN++LG+ ++I + + + + I R+ + LI++ILD+SRI Sbjct: 395 IVSHELRTPLNSMLGWVQIIRHRKL---DEAITSKALETIERNAKLQSKLIDDILDISRI 451 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 G+ L+ + L+ ++ I + ++ K+I++ +D S+ + D + ++QV+ N Sbjct: 452 VQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVGEIMGDAERLQQVVWN 511 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 LLSNAVKFT GGRV V + + Q IS+ D G GI+ +P + F Q Sbjct: 512 LLSNAVKFTPSGGRVEVCLKQVNSNAQ-ISVSDTGKGISGEFLPYIFERFRQADSTTTRV 570 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 + G+GLGL I + ++ H G S+ G +LP + E + +Q K Sbjct: 571 DGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLPL---IEPQSEQLIKESQVKV 627 >gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.] Length = 1019 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 150/386 (38%), Gaps = 29/386 (7%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ + +T A IA+SI A ++ + AL Q + Sbjct: 194 GVIEVGSFQEFTDMQKDFLDEAGKGIAISIYACEAYIRTRLLLEETQVQAGALRVQQEEL 253 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + L + L + N ++ + + +E + Sbjct: 254 RQTNQELEEQTLALGESEEKLKNQKNDLQQINTELEETAMLLEKQKENIRKKNVELEEAK 313 Query: 240 K-------RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + E + KS FL +MSHELRTPLN+IL S ++ G L+ + E+ Sbjct: 314 RLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNLDQKNI-EFAQ 372 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ +G LL LINE LDL+++EAG+ E S + + D+ A+EK + Sbjct: 373 TINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEKGLIFTI 432 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV------------GWTSGR 399 + S +D + + Q+I NLLSNA KFT G + + V G + Sbjct: 433 NQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEK-GTISLDVFRPDNTVDLTLYGLVNKN 491 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D G GI E + ++ +F Q G GLGL I++ + GG+ + Sbjct: 492 TIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGGEITLE 551 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDN 485 + +G +P PE Sbjct: 552 TTEGKGTVFTLYIP-----EIPPEQE 572 >gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] Length = 1111 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 154/380 (40%), Gaps = 10/380 (2%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 G+ W L+ V + A +LIA+ + +++ L F++ + + Sbjct: 313 LKGIDWALVVEVPESVAFARVHQLEKLFVAAMLIAIVLVVMASHYLSN--FITSPLLKLT 370 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 + + + + + + + + +S + + +++ ELE Sbjct: 371 WAAEKVSAGDMDADMINMERKDEIGRLAVSFERMQRSIREKIQLIKQQN---EELESNLQ 427 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 L + + N K FLA+ SHELRTPL+ ++G +E + GP+ + +K + Sbjct: 428 LIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITAD-HKYQLDI 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I SGQ L L++++LD ++ G ++ SA+ L + + K + I + Sbjct: 487 IISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTHLVLELSSHLLGNKPLRIINQ 546 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + V AD + + QV+ NL+ NA+K+T G++ ++ + + D G GI Sbjct: 547 VPEEPVWVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISATVV-DNNIRVQVVDTGQGIP 604 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + Q QG GLGL I++ ++ G + S+ G LP Sbjct: 605 ADQLDHIFEPLIQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLP 664 Query: 474 NTRVLNFIPEDNHESTQYKC 493 +S ++ Sbjct: 665 IATEEQIASASQFDSPHFQA 684 >gi|332141752|ref|YP_004427490.1| two-component hybrid sensor and regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327551774|gb|AEA98492.1| two-component hybrid sensor and regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 699 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + AKS FL+SMSHELRTP+N + G E+ N E Y+ +G+ LL L Sbjct: 204 ASKAKSEFLSSMSHELRTPMNGLFGMIELAID------NPEKSSIYLKKAKTAGRQLLVL 257 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-A 363 IN+ILD+S+IEAG+ ++ + + L+ I+ + + + ++ Q K +E DP L V Sbjct: 258 INDILDVSKIEAGKIKIERAPVDLLQILDDVVSLQRVYCQRKGLEFIYLKDPDLPHVVEG 317 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQYISIKDNGPGIAEGEIPTV 420 D + Q++ NLL+NA+KFT G V + V +T G + D G GIA ++ + Sbjct: 318 DITRISQILHNLLNNAIKFTER-GSVTLKVRYTKHPNGNFLSFDVIDTGIGIASSKLDNI 376 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 F Q G GLGL IA+ + G + S + +G Sbjct: 377 FRKFEQADKTTTRDFGGTGLGLSIAKQLAQLMNGDITVTSFIGQGSTFSFT 427 >gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 474 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 9/266 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + ++++ R +A E + KS FLA+MSHE+RTPLNAI+GF+ ++ E + P + Sbjct: 212 IHDHKISEDGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDI-PFSE 270 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EY I +G LL LI++ILDLS+IE+ E SL ++ + Q Sbjct: 271 AEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQA-QRLCM 329 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 + + + + + + + D ++QV+ NL++NA KFT G + G + Sbjct: 330 PEGVRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFT-DDGSITFGFRSPQGCEQVEL 388 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA+ + + F + S +GVGLGL I ++I GG + S+ Sbjct: 389 FVHDTGKGIAQEHLDRIFERFYKAD----SFVKGVGLGLSICRTITEYLGGAISVESESG 444 Query: 464 EGVEVIAILPNTRVLNFIPEDNHEST 489 +G P +R P T Sbjct: 445 KGTRFTIQHPLSR-PEAAPRREPAGT 469 >gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 973 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE--LETMGPLNNETYKEYIGDIHRSG 298 R E KS F++++SHELRTPL +I G +++ + + ++ + + Sbjct: 486 REREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVSLSNT 545 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L+ LIN+ILD+++IE GR EL +S+ D+ R + + A + + I + P L Sbjct: 546 ERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDLQPGL 605 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 SV AD Q+++NLLSNA+KF+ V ++ T G Y S++D G GI Sbjct: 606 PSVLADRDRSTQILINLLSNAIKFSVGSQSVLLSA-RTDGSMVYFSVRDWGRGIDLENQE 664 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 + F Q + G GLGL I+++++ GG+ + S+L G LP L Sbjct: 665 RIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTFTLPVAPGL 724 Query: 479 NFIPEDN 485 E + Sbjct: 725 PTRTEPS 731 >gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 641 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 7/350 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVL 185 EP PE SA L + + + A + + A I++ + Sbjct: 138 FEPSPIGPEGPPCALSAHLGRQVICTDIQADASFSAHHAISAAMGIAACCVTPILASNGQ 197 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 198 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 257 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K FLA++SHELRTPLNAILG+S +++ + P + I RS + +I Sbjct: 258 NRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADP---ANLGRGLVIIERSARAQTQII 314 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 315 DDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCDGELWFFGD 374 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT GG V V + + ++D G GIA +P V F Sbjct: 375 AGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAAEFLPHVFDRF 433 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 Q G+GLGL I++ ++ HGG S G +LP Sbjct: 434 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 483 >gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 597 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 118/232 (50%), Gaps = 4/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 ++ A+ F+A++SHEL+TP+ ++ GF+E + + ++E +++ I Sbjct: 353 ELKKLEKARKDFVANVSHELKTPVTSLKGFTETLLEGAV--NDDELRMKFLRIIANESDR 410 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI E+L+LSRIE + L+ + + ++ E ML +A K + I +KI S Sbjct: 411 LETLIFELLELSRIEGEAFSLNWQTVDIEPLIDEVFDMLGEKASAKQMTIEKKISGS-PI 469 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + + ++Q+++NL++NA+ +T GG + V V + + + ++D G G+++ EIP + Sbjct: 470 LAGEGARIKQILINLINNAIVYTHEGGTITVRVKEQAEQ-VVLEVEDTGIGLSKKEIPRI 528 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + + H + + S+ +G Sbjct: 529 FERFYRVDRARSRNSGGTGLGLAIVKHLAEAHRAKLSVDSEPGKGTTFRIAF 580 >gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565] gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565] Length = 1413 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I L+ + E R AE+ A+SRFLA+MSHELRTP++ + G E++++ + N Sbjct: 791 ITALKQQEYELREARAYAEQAMQARSRFLATMSHELRTPISGMHGMLELLQMSEL----N 846 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + + ++ S +LL L+N+ILD S+IEAG+ +L+ + L ++ + I A Sbjct: 847 DDQRFMVRNVVTSTNNLLYLVNDILDFSKIEAGQLQLNYQSSRLQTVICDAIRGHAALAH 906 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 K + + + + + D + QVI NLL+NAVKFT GG + + V + S + I Sbjct: 907 NKGLNVVLEWEHHVPDWADIDGVRIGQVISNLLNNAVKFTEQGG-ITIRVSYLSEQ-LTI 964 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIAE + + T F Q I G GLGL I + ++ GG + SK Sbjct: 965 SVSDTGIGIAEEKQALLFTPFEQVESDINRRFGGTGLGLAICEQLVCKMGGALTLTSKAG 1024 Query: 464 EGVEVIAILPN 474 EG +P Sbjct: 1025 EGSCFRFTVPL 1035 >gi|238898708|ref|YP_002924389.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466467|gb|ACQ68241.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 874 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 11/308 (3%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL-SCQAEKDDLIAE 227 PV+ ++ + L ++ F + LF +KI+ ++ +A+ Sbjct: 155 PVLGYIAIDLDLQATRLQQRKECLILGVFLSFAFCMATLFIYRLKIIGQATSDLRKTLAK 214 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 +E+ + T+K+ +E++ KS FLA++SHELRTPLN+++GF+ +T+ T Sbjct: 215 MEIQHIELEMTKKKVQEDSHMKSEFLANISHELRTPLNSVIGFA----RQTLKTSLTPTQ 270 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +YI + +S +LL++IN++LD S++ A + L L V E +I+L A EK Sbjct: 271 TDYIKTMKQSAHNLLSIINDVLDFSKLNAKKLILDHIPFQLRKNVDEVMILLAHSAHEKG 330 Query: 348 IEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----Y 402 +E+ KI + V D +Q+I NLL NA+KFT G + V V + + Sbjct: 331 LELILKIHHDVPDWVMGDPMRFQQIITNLLGNAIKFTEK-GHIIVQVALIAKKEASIHLL 389 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + I+D G GIA + + +F Q +I G GLGL I + ++ G+ S++ Sbjct: 390 VEIQDTGKGIAPEQQAELFQAFIQTDASISRCHGGTGLGLAITRKLVQAMQGEINFDSQV 449 Query: 463 REGVEVIA 470 +G Sbjct: 450 NQGSTFRF 457 >gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2] gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2] Length = 857 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP V P+ + Sbjct: 695 GTRFEIQLPIELV--EKPDAQQQ 715 >gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 482 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE + F+A++SHE+RTPL+ + G+SE I + E E + IH Sbjct: 231 RDVTEEFKLEKLRRDFVANVSHEIRTPLSMLQGYSEAILDGF--ADSPEERDELVQVIHD 288 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+ ++LDL+R+EAG EL + ++V+ A+E++I + ++ Sbjct: 289 ESVRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPE 348 Query: 357 SLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT-------VGWTSGRGQYISIKDN 408 + ADE + QV+ NLL NA++ T G + V+ +G + + IKD Sbjct: 349 QHLFMESADEDRLEQVLTNLLDNALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDE 408 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKS-AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI ++P + F + + K + G GLGL I ++I+ +H G + S + +G Sbjct: 409 GEGIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTT 468 Query: 468 VIAILPN 474 +LP Sbjct: 469 FTLLLPV 475 >gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 528 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 6/252 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + A + + + + K FLA++SHELRTPL AILG+ ++++ E Sbjct: 127 RDITGQKDAARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEA---- 182 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + I R+ + LI ++LD+SRIEAG+ L + L +V + ++ Sbjct: 183 TPADLAQGLEVIERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPT 242 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A K+I + + D+ ++Q++ NLL+NA+KFT GR+ VT+ + Sbjct: 243 ADAKDIRLTSLLADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEV 302 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-K 461 I + DNG GIA + V F Q + G+G+GL IA+ + HGG + S Sbjct: 303 I-VSDNGQGIAPEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLG 361 Query: 462 LREGVEVIAILP 473 L +G LP Sbjct: 362 LGKGASFTLSLP 373 >gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 15/361 (4%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--------A 178 +E + I + ML + +V Sbjct: 541 LEAQAQAAVARILPGRTAAWIGAPLGRYLAVMLTLCAVIGLILGIVHAGATIAHPENREF 600 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237 + + ++ +++ + + + A IA +V + E Sbjct: 601 LRTALTSVFFTLVVILGVVAWLFVLAQESRRVAQAETMRQTALYQAEIAAHKVTDAKLQE 660 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 ++RAE N AKSR++ +SHELRTPL+ +LG+++++E P + I RS Sbjct: 661 AKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLES---DPAIPAHRVNGLRVIRRS 717 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 QHL LI+ +LD+SR+EAGR ++ + L D + + + M++L+A+E +E Sbjct: 718 AQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDMVRLQAREAGLEFRFSRPEI 777 Query: 358 LSSVWA-DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 L +V A DEK +RQV+LNLLSNA+KFT G V + + + + +I+D GPGI E + Sbjct: 778 LPAVVATDEKRLRQVLLNLLSNAIKFTEA-GTVSLDLSYR-SQIAVFTIRDTGPGIPEAD 835 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + F +GS + G GLGL IA + GG+ + + G + L Sbjct: 836 LARIFEPFERGSTPAARSTPGTGLGLTIANLLAQLLGGEITVTAAPGGGTQARLRLMLAS 895 Query: 477 V 477 V Sbjct: 896 V 896 >gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 2457T] gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 2457T] gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor [Shigella flexneri 2002017] gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T] gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1415 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 134/351 (38%), Gaps = 11/351 (3%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 P A ++ P V VA T + L Sbjct: 234 DASHPAVKPTLALAGGDEPWPVAEAFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVL 293 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEE- 245 + + L + + Q + ++ A + +D E R+RAE Sbjct: 294 PIPASGDTGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRAEALA 353 Query: 246 --NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AK+ F +++SHE RTPL +L E + + +G HR+G LL Sbjct: 354 EIDRAKTAFFSNVSHEFRTPLTLMLSPLE---EALGRDGIADEQRTLLGIAHRNGLRLLK 410 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N +LD +RIEAGR + + L E + + + P V+ Sbjct: 411 LVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAGLRFVIEAPPLPQPVYV 470 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422 D +++LNLLSNA KFT G + V VG I + D G GI E EIP + Sbjct: 471 DRDMWEKIVLNLLSNAFKFTFE-GEIVVRVGPDPDGRHAVIEVSDTGTGIPEAEIPHLFE 529 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A + +G G+GL + Q ++ H G + S++ G LP Sbjct: 530 RFRRVEGARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVTLP 580 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 112/327 (34%), Gaps = 30/327 (9%) Query: 165 LSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 + P + M + + AG ++++ Q + + Sbjct: 965 VWATPWFGSTPGLPEMIRSDIAVVAAGETVRRELHVNLPAGGWRWFDLQMRPVQDPQGQV 1024 Query: 225 IAELEVAKSLSDETRKRAEEENL------AKSRFLASMSHELRTPLNAILGFSEVIELET 278 IA + A +++ R++AEE A + ++H+ L I ++++ Sbjct: 1025 IAIVPEAVDITE--RRKAEEAFRQAQKMEAIGQLTGGVAHDFNNMLTVIRSSADLLRRRE 1082 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + P E + Y+ I + L ++L +R R+ + + + + M Sbjct: 1083 LPP---ERVRRYVDAISDTADRAAKLTGQLLTFAR----RHAQNREVFDAAEHIEDVSDM 1135 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS- 397 L+ A I V AD ++NL++NA G + V+V ++ Sbjct: 1136 LKT-ALGSRAVFNLDIAERPLPVEADTNQFDAALVNLVANARDAMDGHGTLTVSVTRSAP 1194 Query: 398 ---------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 +SI D G GI +I + F K +G GLGL Sbjct: 1195 TPQEAAAGSRGFVEVSIADTGCGIPREQIERIFEPFF----TTKDIGRGTGLGLSQVYGF 1250 Query: 449 MANHGGQFLIRSKLREGVEVIAILPNT 475 + GG + S + G + LP + Sbjct: 1251 VQQSGGTINVDSAIGCGTTITLRLPLS 1277 >gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MZO-3] gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MZO-3] Length = 857 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVERPDAPQQLLPAPD 721 >gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1199 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 149/331 (45%), Gaps = 46/331 (13%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL----EVAKSLSDETRKRAEEENLAK---------- 249 S ++ L + + + E A+ E RK+AE Sbjct: 641 PRVWHSSEIESLRQLCVQLAIAIQQSTLFEQAQIEISE-RKQAELALQQAKEAAEAANRA 699 Query: 250 -SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 S FLA+MSHELRTPLN ILG++++++ M ++ + I G HLL LI++I Sbjct: 700 KSEFLANMSHELRTPLNGILGYTQILK---MHDNLTSQQQDNLQTIQDCGGHLLTLIDDI 756 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LDLS+IEA + EL + + + ++ + Q+RA +KNI + L ++ADEK Sbjct: 757 LDLSKIEAEKMELYPTELDFRNFIKSISDLFQMRASQKNIAFTCEELSQLPRSIYADEKR 816 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-----------------------QYIS 404 +RQV++NLL NAVKFT GG V VG G Sbjct: 817 LRQVLINLLGNAVKFTNSGG-VTFKVGCLEGGEWGLGTIGNNEQRTTNNYQLPIIKLRFQ 875 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI ++ + F Q S + +G GLGL I+Q ++ GG+ ++S L + Sbjct: 876 VEDTGIGIEASKLEEIFLPFHQVSD-RAYSTEGTGLGLSISQKLVKMMGGEIGVKSALNK 934 Query: 465 GVEVIAILPNTRVLNFIP-EDNHESTQYKCY 494 G L V N P + E Q + Sbjct: 935 GSIFWVDLELPLVENSYPLVETKEVPQIVGF 965 >gi|257454753|ref|ZP_05620007.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus SK60] gi|257447873|gb|EEV22862.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus SK60] Length = 1101 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 17/288 (5%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + + E+E+ R A + KS FLA++SHE Sbjct: 295 LRRLHKSFQELKNHAEQTEDDLRLAFDEMEMQNISIRNARDAAVSASQTKSAFLANISHE 354 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+I GF ++ N Y+ I +S HLL L+N++LD S+IEAG+ Sbjct: 355 LRTPLNSIDGFINLLSRHGG---LNAEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKL 411 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSN 378 L L + + + ML A EK++ + + + D +QV+ NL++N Sbjct: 412 VLDSHEFDLYASIYDVVDMLSPLAAEKDLRLAVFFYDDVPHYLVGDALRTKQVLTNLVNN 471 Query: 379 AVKFTAIGGRV-HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 A+KFT G + V++ +IS++D G GI+ + SF QG +I G Sbjct: 472 AIKFTDDGEVIVRVSLDDDIDDLIHISVQDTGRGISPEHQKVLFQSFSQGDPSITRQYGG 531 Query: 438 VGLGLPIAQSIMANHGGQFLI------------RSKLREGVEVIAILP 473 GLGL I++ + GG +S +G LP Sbjct: 532 TGLGLVISKQLTYLMGGNIGFYDNATEQAGDASQSHKIKGTTFWFTLP 579 >gi|157803446|ref|YP_001491995.1| histidine kinase sensor protein [Rickettsia canadensis str. McKiel] gi|157784709|gb|ABV73210.1| Histidine kinase sensor protein [Rickettsia canadensis str. McKiel] Length = 497 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E + + ++F A++SHELRTPLN+I+GFSE++ E Sbjct: 241 ARQIIEEQLETNRNLKAQIVKLERTSSSNTKFFANISHELRTPLNSIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++ + +++ Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLALVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + K+ + AD K ++QV+LNLLSNAVKFT GG V + + + Sbjct: 357 SRADQAEVALISKLPKEHVVIKADPKRLKQVLLNLLSNAVKFTNSGGSVTIALKKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L+ FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSVFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ +G V Sbjct: 477 SKINKGTTVTITF 489 >gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 622 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +E + +AE + KS++LA MSHE+RTPLNAI GFSE++ + Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + Q L+ LIN+ILD+S+IEA +++ + + +++ +LR Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ + + D + Q+I NL++NA+K T G + + Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYAIQPDDQLRFY 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + ++ V F + I +G+GLGL I + ++ GG + S+L Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610 Query: 465 GVEVIAILP 473 G E ILP Sbjct: 611 GSEFSFILP 619 >gi|124515967|gb|EAY57476.1| putative multi-sensor hybrid histidine kinase [Leptospirillum rubarum] Length = 851 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 160/402 (39%), Gaps = 22/402 (5%) Query: 80 LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVE-PGTWTPEYLT 138 + V + + +L L + L + Sbjct: 35 VIVGMIASFYLYTLHHVPGVSAIPVSAHSMILPVIAYTTLLLATIYLFPGYHPVRILFGI 94 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + +++ ++++ + L + +A ++ Sbjct: 95 AGDLSLVMLVMALTGVKGLPLGVVDLWVI--------MGNGFRFGPRYLGIATGISAVEF 146 Query: 199 FFTYITYHLFKSNVKILSCQAE-KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 Y ++ + + Q L + V + ++ + A N +KSRFLA+MS Sbjct: 147 IGVYRVNPWWQQHTVLFDTQLIGMIVLPLYMAVLLTKLEKLIEAANAANQSKSRFLANMS 206 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN I+G SE++ + + E + + S +HL ++I++ILD SR+EAG Sbjct: 207 HELRTPLNGIMGLSELLREQ-----ASPRQNELLNTLQGSARHLSDIISKILDFSRLEAG 261 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 R +S + +V E + L A++KN+ + +D S + D ++Q++ NLL Sbjct: 262 RMTVSLVTFDVGQVVAETVSALLPLARQKNLPVTVLMDARFPSSLRGDPFHLKQILTNLL 321 Query: 377 SNAVKFTAIGGRVHVTVGW-----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 NA+KFT G V +TV T + D G GIAE E + SF QG ++ Sbjct: 322 GNAIKFT-ESGEVALTVTPVLTSDTRELSVRFEVSDTGIGIAEEEKSRIFESFSQGDDSV 380 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GLGL I + ++ G+ S +G +P Sbjct: 381 TKRYGGAGLGLAITRQLVDLEKGKLGFLSHSGKGSIFWCTIP 422 >gi|75759998|ref|ZP_00740065.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899979|ref|ZP_04064217.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL 4222] gi|74492517|gb|EAO55666.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859665|gb|EEN04087.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL 4222] Length = 466 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 +S+ +G VI L Sbjct: 444 KSEKDKGTTVIIKL 457 >gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 877 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 137/266 (51%), Gaps = 7/266 (2%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 +AEK E++ + +D TR K FLA MSHELRTPL A+L +E + E Sbjct: 498 EAEKALWKRTEELSAASADLTRTA-----RMKDEFLAHMSHELRTPLGAMLNLAEALAEE 552 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 ++G L NE + + I G+H L+LI +ILDLS++EAGR +L S + + + R + Sbjct: 553 SLGTL-NEAQRRILQSIEECGRHFLSLIGDILDLSKVEAGRLDLVRSPLDVASLARGALT 611 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 L ++K I + + L D K +RQ+++NLLSNAVKFT GGRV V V Sbjct: 612 ALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLLSNAVKFTPQGGRVGVEVLRDP 671 Query: 398 GRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 R +++ D G GI+ ++ + F QG + + G GLGL + ++ HGG Sbjct: 672 LRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSRSFSGTGLGLSLVLRMVELHGGGL 731 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIP 482 + S EG LP ++ P Sbjct: 732 QVESAPGEGSRFTVRLPLAEEVSEEP 757 >gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|225849089|ref|YP_002729253.1| alkaline phosphatase synthesis sensor protein PhoR [Sulfurihydrogenibium azorense Az-Fu1] gi|225644480|gb|ACN99530.1| alkaline phosphatase synthesis sensor protein PhoR [Sulfurihydrogenibium azorense Az-Fu1] Length = 332 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 AK F++++SHEL+TP++ + E IE E + K+++ + + + +LIN Sbjct: 110 QAKKDFVSNVSHELKTPISVLKSAVETIEEEK----DPVMIKKFVNIAKKRIEQMDHLIN 165 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++L L+R+E+ ++ + L + E L+ +EK I++ P+ V+ADE+ Sbjct: 166 DLLILARLESQEDQVKKERYDLHKQIEEIFEDLKHLTEEKEIQL-INQVPNKFDVYADEQ 224 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + + NL+ NA+K+ G+V V + I+++D G GI E IP + F + Sbjct: 225 KLSIALKNLIENAIKYNKQNGKVIVKA-VKDSKYTTITVEDTGIGIPEESIPLIFERFYR 283 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + G GLGL I + I H G+ + SKL EG + +P Sbjct: 284 VDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESKLGEGSKFFIKIP 330 >gi|295402180|ref|ZP_06812138.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294975771|gb|EFG51391.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 442 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 3/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A+ SHELRTPL+ EVIE + L + + + D+ + + L Sbjct: 213 AFQRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVF-DDMKDELRRMTKL 271 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L L+R +A EL++ L ++ E I + A++K+I+ I ++ ++ D Sbjct: 272 INDLLWLARSDANAIELTKEWFLLPPVIDELIRKCRPLAEQKHIKFVTNIQKDMA-IYGD 330 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++ + Q+I LL NAVK+ G++ + V I I D G GI + + F Sbjct: 331 KERIIQLIFILLDNAVKYNTENGQIKIAVERDRKN-VNIEISDTGIGIPVEQQALIFERF 389 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +QG G+GL IA+ I+ HGG ++S+ +G I LP Sbjct: 390 YRADPSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438 >gi|238650409|ref|YP_002916261.1| sensory transduction protein kinase [Rickettsia peacockii str. Rustic] gi|238624507|gb|ACR47213.1| sensory transduction protein kinase [Rickettsia peacockii str. Rustic] Length = 497 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++R +I+++ Sbjct: 299 --DAEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + ++ + AD K ++QV LNLLSNAVKFT GG V + + + Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ EG + Sbjct: 477 SKINEGTTITITF 489 >gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 480 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE +S F+A++SHE+RTPL+ + G+SE + G + E +E + IH Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG--SPEESEELVQVIHD 289 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+ ++LDL+R+EAG ++ + + +++ +R++E+ + + Sbjct: 290 ESLRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQG 349 Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGI 412 + ADE + QV+ NLL NA + T G +V + I IKD G GI Sbjct: 350 QRLLLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGI 409 Query: 413 AEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 A ++P + F + A E +G GLGL I ++I+ HGG S L EG E + Sbjct: 410 ASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAASVLGEGTEFTIL 469 Query: 472 LPNT 475 LP + Sbjct: 470 LPIS 473 >gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708] gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708] Length = 613 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 153/305 (50%), Gaps = 10/305 (3%) Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + L ++ + + I + + E N K++FLA+ S Sbjct: 181 PLQIQLRSQLITKTIQHFNTALAQLRQIQFWQQRCQQLANFNQELERTNQLKNQFLANTS 240 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPL++I+GF+ ++ + P + ++EY+ I SG+HLL+LIN+ILDLS+IEA Sbjct: 241 HEIRTPLSSIIGFTHLLLAQGYEPE-RQRHQEYLHIIQSSGKHLLDLINDILDLSKIEAN 299 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + E+ + + + R + +++ +A K +++ +I+ ++++ D ++Q++LNLL Sbjct: 300 QLEVQWEIVEVSTLCRNVLALVKEKAANKGLKLRLEIENDVTNLVVDPLRLKQMLLNLLF 359 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NAVKFT + G V + V S+ D G GI++ + + Q + +G Sbjct: 360 NAVKFTNL-GSVGLRVSI-KDLYLRFSVWDTGIGISQENQTRLFRPYSQIINPGAGSNEG 417 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP------NTRVLNFIPEDNHE-STQ 490 GLGL + Q + HGG + S + +G +LP + ++ E++ E S + Sbjct: 418 SGLGLVVTQQLAEIHGGYLELESAIDQGSCFTIVLPLKPQGRASEAIDIKAEEDSEISQE 477 Query: 491 YKCYA 495 K Y+ Sbjct: 478 VKKYS 482 >gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32] gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32] Length = 537 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 133/270 (49%), Gaps = 10/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + N ++ + ++ ++ A N AKS FLA+MSHE+RTPLN I Sbjct: 4 IQGNDELAEFTETLNRVMERNYHHNKELIIAKEDAISANKAKSAFLANMSHEIRTPLNGI 63 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E++ + + +E + DI S LL L+N+ILDLS+IE+G LS Sbjct: 64 IGMAEILSQSQL----SANQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 119 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L + V + + ++ +A K+IE+ ID + ++ DE +RQV+ NLLSNA+KFT+ Sbjct: 120 LREAVYDSVSVILSKAISKDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSK- 178 Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + + +T S+ D+G GI ++ ++ F Q +I G GLGL Sbjct: 179 GTITTDIAYTPMSLGRGKLECSVSDSGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 238 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I + ++ GG RS G L Sbjct: 239 AICRQLVDLMGGYITARSVKGGGSTFTFCL 268 >gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56'] gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 1444 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 18/336 (5%) Query: 157 FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSF--FTYITYHLFKSNVKI 214 ++ A F +F P+ + Q S+ V+ + + T L + ++ Sbjct: 956 AVIELASFQNFTPIHLTFLEQLTQSIGVVFNMIGASMRTEELLQELQRSNTELGSRSQEL 1015 Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 +E + E+ A + +E + + KS FLA+MSHELRTPLN++L + ++ Sbjct: 1016 EEKASELEIKNREIARASASLEEKARELSRTSKYKSEFLANMSHELRTPLNSLLILARIL 1075 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 L EY I +GQ LL LINEILDLS+IEAG+ ++ + L ++ Sbjct: 1076 ADNEEHTLT-PKQVEYAKTIAAAGQDLLQLINEILDLSKIEAGKIDVKTQRVLLSELAEY 1134 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 + A++K +E + ++ + + + D + ++Q++ NLLSNA KFT+ GR+ + + Sbjct: 1135 VERSFRQIAEQKELEFWVRVATGVPAGIMTDLQRLQQILKNLLSNAFKFTSS-GRISLEI 1193 Query: 394 GWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 S + ++ D G GI + + +F Q + G GL Sbjct: 1194 EVASKGLTFKRETLIKAKTVLAFAVTDTGIGIPTEKQTLIFDAFQQADASTSRTYGGTGL 1253 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 GL I++ + + GG+ + S G + LP R Sbjct: 1254 GLTISRELASLLGGEISLNSTPGLGSKFTLYLPAER 1289 >gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 870 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 625 IQRYKTTEEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K +I I+++ LL LIN+ILDLSRIE+G + + +L +++ +L Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMP 742 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + S + D ++QV+ NL++NAVKFT G + + Sbjct: 743 PGVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQ-GSITFGYTEEEPGYTSLF 801 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + + F + S QG GLGL I Q+I+ G + S+ Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIVGRLNGMITVASEEGH 857 Query: 465 GVEVIAILP 473 G LP Sbjct: 858 GTRFTVRLP 866 >gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302] gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1082 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 159/314 (50%), Gaps = 7/314 (2%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTY--ITYHLFKSNVKILSCQAEKDDLIAELE 229 A + + ++ + L A + + L + + I + Sbjct: 446 AAAAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRK 505 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + ++ + R+ AE + K+ FLAS+SHELRTP+NA++GF+++I E GP+ N Y++ Sbjct: 506 IMEAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRD 565 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + +I SGQHLL LINEILD R EAG+ L + + L I +L RA I Sbjct: 566 FAINIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIA 625 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 I K++P+ + DE+ +RQ++LNLLSNAVK+T GG V +T G G + ++D G Sbjct: 626 IAAKVEPAARHMRGDERRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTG 685 Query: 410 PGIAEGEIPTVLTSFGQGSI-----AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 GI E E+ V ++ + A +G GLGLP+ + ++ HGG + S++ Sbjct: 686 VGIPEPELERVPPAYTRVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGR 745 Query: 465 GVEVIAILPNTRVL 478 G V P R+ Sbjct: 746 GTTVTVHFPPGRLA 759 >gi|256841371|ref|ZP_05546878.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737214|gb|EEU50541.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 638 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + + ++ + + F + ++ + + QA+K L+ Sbjct: 344 LLPKDAILLNFPFKAQYPRLFRSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405 IE +K + +++D++ + Q + N+L NA+KFT+ G + + +++ + + + Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSADAQDVRLYV 573 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629 Query: 466 VEVIAIL 472 + + Sbjct: 630 CRISLVF 636 >gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 536] gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536] gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 661 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 11/267 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + KS + +A E+ K D R +AE EN +K RFLA +SHELRTPL + Sbjct: 108 IIKSELSSSRFARAIRYALARREIEKERVD--RLKAEAENRSKDRFLAHLSHELRTPLTS 165 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG++E++ +G + + + +HLL+L+N +LDLS+I A + EL+ S + Sbjct: 166 ILGYTELLMDSKVGQSAQSE----LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEV 221 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI 385 +L ++ + ++ + A +K + + L + D RQV++NL+SNA+KFT Sbjct: 222 NLDAMIADVYALMTIPATDKGLTLTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEK 281 Query: 386 GGRVHVTV---GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G V V++ Y ++ D G GI + +I + F Q + + + G GLGL Sbjct: 282 -GSVDVSLWSEKRNKTDYLYFTVADTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGL 340 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVI 469 I +++ GG + S+ +G Sbjct: 341 AICNELVSKMGGDVSLTSEFGKGSCFT 367 >gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199] gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199] Length = 666 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 7/244 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E + E + KS FLA++S+ELRTPLNAI+GFSE++E E GP+ N+ KEY Sbjct: 422 QRALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPM-NDRQKEYA 480 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I +S L+ L+N+ILDL+ IEAG EL + + ++ + + RA+ + I+ Sbjct: 481 RAILQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFS 540 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 +ID +++ + DE+ + Q + NL+SNA FT GGRV VTV + D G G Sbjct: 541 VRIDGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVE-DDDDMVLFRVADTGVG 599 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA + V F + + G GLGL + +S++ H G + S+ G EVI Sbjct: 600 IALEDQGRVFDRFERAG-----RDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICR 654 Query: 472 LPNT 475 +P + Sbjct: 655 IPRS 658 >gi|84623382|ref|YP_450754.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367322|dbj|BAE68480.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1191 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402 + +D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 905 QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1023 Query: 462 LREGVEVIAILPNTRV 477 L +G + LP V Sbjct: 1024 LGQGACFVVELPLRWV 1039 >gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327] Length = 949 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] Length = 396 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + +E+ + + + + R +AEE + KS FLA+MSHE+RTPLNAI+GFS Sbjct: 142 LCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 201 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++ + ++Y I R+ + LLNL N+ILDLS +EA + I LIDI Sbjct: 202 KL----VIDAECTNEKEQYAEIIERNSEILLNLFNDILDLSSLEADSLSFNIRPIKLIDI 257 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + ++ + V D + Q+I NLLSNA KFT G +H Sbjct: 258 CLQLEQQFCYKVKN-GTKLILDDVDTELYVSGDWNRIIQIISNLLSNAAKFTPK-GEIHF 315 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 +KD+G GI + T+ F I QG GLGL + + ++ Sbjct: 316 GY-REKEDFVEFYVKDSGIGIPAERVATIFQRF----GKINDFVQGTGLGLTLCRMLVEK 370 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476 GG+ +RS+ +G LP R Sbjct: 371 MGGRIWLRSQEGKGSRFYFTLPLIR 395 >gi|89893568|ref|YP_517055.1| hypothetical protein DSY0822 [Desulfitobacterium hafniense Y51] gi|89333016|dbj|BAE82611.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 457 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 140/352 (39%), Gaps = 9/352 (2%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 + + + +I N +L A+ + + +A + +S + Sbjct: 115 IFLVAVPLKGQNQIMGSVIISSPLSAIKQHVNSILVTALIGAVIGIFLATISSIFISRKL 174 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + + ++ + E L V + E E Sbjct: 175 VRPLMKMEETAKSIADGEYGRQIQ------VTSEDEIGRLAHSFNVMSAELKEKIDAIER 228 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + + L+ +SHELRTPL I G++E ++ + + E + Y+ + + L L Sbjct: 229 YDRLRQELLSDVSHELRTPLTVIQGYTEAMQDGLV--KSKEQEQHYLKLVIDEIERLRRL 286 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + ++ DL +EA + + +V+ + L+ A+ K I++ I ++W + Sbjct: 287 VEDLQDLKGLEAMDSINDMDYVVMNKLVQISVERLKYFAESKEIQLEVIIPEKQITIWGN 346 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NL NA+K + G V + +G T YI++KD+G GI + E+ + F Sbjct: 347 SDRLKQVLTNLADNAIKHSDSKGNVRIELG-TEKSWAYIAVKDSGSGIPKEELQNIWERF 405 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + + G GLGL I + I H G+ + SKL G P + Sbjct: 406 YKVDKSRSRRGTGTGLGLSIVKRITEMHSGKVAVESKLGNGARFTVYFPLEK 457 >gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 595 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 6/262 (2%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 +++ A + +LE + +A N AKS FL ++SHELRTPL +I GF+E Sbjct: 330 TLIALGAGFLRGLHQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAE 389 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 ++E L +Y+E G I + +HL L++EILDL++++AG + ++ ++V Sbjct: 390 LMEQR----LEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELV 445 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + A +K + + I P + V D ++Q++ NLLSNA+KFT GG V + Sbjct: 446 GTTVDLFAISAVQKGLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTREGG-VRL 504 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 G + D GPGI + F QGS + + G GLGL +++ + Sbjct: 505 ETDTADGHSVRFRVTDTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLALSRGLAEL 564 Query: 452 HGGQFLIRSKLREGVEVIAILP 473 GG+ + S+ +G LP Sbjct: 565 MGGRLTVASEPGQGACFTLELP 586 >gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC 11862] Length = 629 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 117/250 (46%), Gaps = 13/250 (5%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 ++ R E +F++++SHELRTPL ++ + + ++ + + E + ++ Sbjct: 377 EQQRIELER-----RQFVSNVSHELRTPLTSVKSYVDALQEGAID--DPEVARNFLAVAQ 429 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN-----IEI 350 ++++IN++L+LSR+++G +L +++ ++ + + + I Sbjct: 430 DETTRMIHMINDLLELSRMDSGTMKLETEYVNVGELFNYILNRFDMIIANDDKPEKYYTI 489 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 ++I V D QVI N+++NA+K++ GG V + + + +SI D G Sbjct: 490 KREIPKVQIWVELDTSKFTQVIDNIMNNAIKYSPDGGVVTARM-IDNQKEVVLSITDQGL 548 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + ++ + F + A A+ G GLGL I++ I+ GG+ + S +G Sbjct: 549 GIPKKDLGHIFDRFFRVDKARSRAQGGTGLGLAISKEIIERFGGRIWVESAEGQGSTFSI 608 Query: 471 ILPNTRVLNF 480 LP Sbjct: 609 SLPYEPYDPT 618 >gi|327403356|ref|YP_004344194.1| multi-sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] gi|327318864|gb|AEA43356.1| multi-sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] Length = 821 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 8/256 (3%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L + + + + ++++ AKSRFLA+MSHE+RTPLNAI GF+E + E + Sbjct: 310 LFKKSKETNFQLELAKDKSDQLTEAKSRFLATMSHEIRTPLNAISGFTEQLFFEPLNASA 369 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + K I S +HL + NEILDLS++E +L + A + + + +L+ Sbjct: 370 AKKVK----IIRNSVKHLSQITNEILDLSKLEKDHIQLEKIAFNPANEIAMLQEQYELQV 425 Query: 344 QEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQ 401 QE+N ++ ++D + +V D RQ+I+NL+SNA KF+ G + + + Sbjct: 426 QERNNQLVVELDQAPFPNVLGDPLRFRQIIINLISNANKFSKDGLITILLKFEKVDDKQI 485 Query: 402 Y--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I ++D G G++ G+ + F Q + + G GLGL I + I+ G + Sbjct: 486 RCLIEVQDQGIGMSTGQKERIFEPFEQADLTVTRKYGGTGLGLSITKQIIDKQNGSIRVN 545 Query: 460 SKLREGVEVIAILPNT 475 SK G +P Sbjct: 546 SKEGIGTTFFIEIPFE 561 >gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 605 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +E + +AE + KS++LA MSHE+RTPLNAI GFSE++ + Sbjct: 364 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 419 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + Q L+ LIN+ILD+S+IEA +++ + + +++ +LR Sbjct: 420 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 479 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ + + D + Q+I NL++NA+K T G + + Sbjct: 480 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 537 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + ++ V F + I +G+GLGL I + ++ GG + S+L Sbjct: 538 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 593 Query: 465 GVEVIAILP 473 G E ILP Sbjct: 594 GSEFSFILP 602 >gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 622 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +E + +AE + KS++LA MSHE+RTPLNAI GFSE++ + Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + Q L+ LIN+ILD+S+IEA +++ + + +++ +LR Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ + + D + Q+I NL++NA+K T G + + Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + ++ V F + I +G+GLGL I + ++ GG + S+L Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610 Query: 465 GVEVIAILP 473 G E ILP Sbjct: 611 GSEFSFILP 619 >gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 622 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +E + +AE + KS++LA MSHE+RTPLNAI GFSE++ + Sbjct: 381 IQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADTD 436 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E Y I + Q L+ LIN+ILD+S+IEA +++ + + +++ +LR Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP 496 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +++ + + D + Q+I NL++NA+K T G + + Sbjct: 497 G-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKE-GSITMGYTIQPDDQLRFY 554 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI + ++ V F + I +G+GLGL I + ++ GG + S+L Sbjct: 555 VRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGV 610 Query: 465 GVEVIAILP 473 G E ILP Sbjct: 611 GSEFSFILP 619 >gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli] Length = 933 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|206977539|ref|ZP_03238433.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217958875|ref|YP_002337423.1| sensor histidine kinase [Bacillus cereus AH187] gi|222095034|ref|YP_002529094.1| sensor histidine kinase [Bacillus cereus Q1] gi|229138086|ref|ZP_04266684.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26] gi|206744257|gb|EDZ55670.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217063391|gb|ACJ77641.1| sensor histidine kinase [Bacillus cereus AH187] gi|221239092|gb|ACM11802.1| sensor histidine kinase [Bacillus cereus Q1] gi|228645431|gb|EEL01665.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26] gi|324325417|gb|ADY20677.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 466 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + VT+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMVTLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 128/249 (51%), Gaps = 10/249 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +E + +AE + KS++LA MSHE+RTPLNAI GFSE++ ++ Sbjct: 319 IQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA----FADSD 374 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY I + L+ LIN+ILDLS+IEA +S + + ++ ++LR Sbjct: 375 EERREYYEIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRMP 434 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 E +++F + AD + Q+I NL +NA+K T G + + + Sbjct: 435 E-GVQLFLEKGSCTCCFGADSIRLLQLINNLANNAIKNTKQ-GSITLGYTCLPDKCLEFY 492 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +KD G GIA+ ++ ++ T F + +G+GLGL I Q ++ GG + S+L Sbjct: 493 VKDTGTGIAKDKLESLFTRFVKV----NDYVEGIGLGLAICQGLVTKMGGSMHVESELGV 548 Query: 465 GVEVIAILP 473 G +LP Sbjct: 549 GSTFSFVLP 557 >gi|167647655|ref|YP_001685318.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167350085|gb|ABZ72820.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 602 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 188/471 (39%), Gaps = 23/471 (4%) Query: 27 YPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAAN 86 + EI H+ L + L+++ ++ + + +A A Sbjct: 6 DRREPIPAHEIAGSHLPILRGYLLAAATYYLVISLSHPFYETGLALVVLEGLAVAAAVAG 65 Query: 87 LSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLL 146 L L +++ ++ + L L + + + P L + L+ Sbjct: 66 LWLWRRLKTRPPQMPGLE------LAALAMNALFMANVVAYQHLHFEPAKLVYFILMALV 119 Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 A S ++ +V + +++ + A A T + Sbjct: 120 FATSAPTRRVALV--SVGAALAGLLLMAREAPGDLVGQYGFMGAAGAFAAFGMSTLMRGA 177 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK---RAEEENLAKSRFLASMSHELRTP 263 + + L+ A L ELE + L E + A+ N K+ FL +MSHE+RTP Sbjct: 178 VMRELRARLASDALNRKLAEELEENRRLRTEAQDLAVVAQTANRVKTEFLETMSHEIRTP 237 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN +LG ++ +E +T+ + + + I SG LL++IN +LD+SRIEAG+ E+ Sbjct: 238 LNGVLGMAQAMERDTL----SARQRTRLAMIQDSGATLLDVINAVLDISRIEAGKMEIVR 293 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKF 382 + L + + A +K ++ ++ + D +RQV+ NL+SNA+KF Sbjct: 294 APFRLDALTDTLRQLYGGLAHDKGLDFSLEVATETAGWRDGDVARLRQVLSNLISNAIKF 353 Query: 383 TAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 T GG VTV RG ++ D G G+ EG + F Q + G GLG Sbjct: 354 TDAGG---VTVRIDGDVRGVNCTVSDTGVGVPEGRRAQIFEKFVQVDSSSTRRTGGSGLG 410 Query: 442 LPIAQSIMANHGGQFLI--RSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 L I + ++ GG+ S+ G +P V + P + E+ + Sbjct: 411 LAICRELVTLMGGRIDFIDTSEAG-GACFTFQIPCPVVASPEPAASVEAVE 460 >gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] Length = 1125 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 18/384 (4%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W L+ + + K +++ ++I + + ++ + + + + + Sbjct: 330 TWALILELPEEEAFARIYQLEKIFVVVMVIAILLVVIGSHLLSHSITAPLLKLTWAAEQV 389 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + + + +S L+ E++ ELE L + Sbjct: 390 SAGDLDQKINNTDREDEIGRLAVSFARMQRSVRDKLALIREQNK---ELEQNIQLIKQKN 446 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + ++ + K FLA+ SHELRTPL+ ++G +E + GPL E K + I SG+ Sbjct: 447 EELQQADRMKDDFLATTSHELRTPLHGMVGIAESMLAGAEGPL-PERQKHQLRMIINSGE 505 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L NL++++LD ++ G E+S A+ + VR I + K + I ++ L Sbjct: 506 RLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQVPIDLP 565 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V AD + + QV+ NL+ NA+K+T G++ ++ G+ I + D G GI ++ Sbjct: 566 LVRADGQRLEQVLYNLIGNAIKYTDE-GKIIISATVLQGQ-LRIQVVDTGQGIPSDQLEY 623 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + Q + QG GLGL I++ ++ GGQ + S+ G LP + Sbjct: 624 IFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEED 683 Query: 480 ------------FIPEDNHESTQY 491 P E Y Sbjct: 684 KAKTRLANNVHFAAPHAELEPVDY 707 >gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis TXDOH] Length = 926 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 87/429 (20%), Positives = 165/429 (38%), Gaps = 34/429 (7%) Query: 60 ANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGL 119 + + ++ + + + + + LL ++ Sbjct: 269 TIAAALALRFSLVTGFAAGIIVM---LWVVAVQFDRKGLIPNYRRA--QRLLESEVLNRT 323 Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 + + + + +N ML + S P+ L Sbjct: 324 ILRTAPVGLGLLSAQDGSVLLQ-------------NNAMLELSARTSGEPLPNRLWDAYR 370 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLF-KSNVKILSCQAEKDDL-----IAELEVAKS 233 + + +L L+ + ++ ++NV + L I+ + ++ Sbjct: 371 QTTGRSNDEDGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISMRKESEL 430 Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E R +++ N AKS FLA+MSHE+RTPLNAI+G E++ + E + Sbjct: 431 KLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSN----QQSERLQV 486 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + LL++IN+ILDLS++E+G+ L + +++E + A+ K +++ Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSN 546 Query: 354 IDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDN 408 + ++ + D +RQ++ NL+ NA+KFT G + V V I + D Sbjct: 547 LGEGVARYYSGDPARIRQILSNLIGNAIKFTER-GHISVDVHQAKAAQGDSAIEIWVNDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI I T+ + Q +I G GLGLP+ + + GG + S G V Sbjct: 606 GIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTV 665 Query: 469 IAILPNTRV 477 +LP Sbjct: 666 TVVLPLREA 674 >gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BL21(DE3)] gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 933 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 2740-80] gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457] gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33] gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2] gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX 330286] gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33] gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9] gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MJ-1236] gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10] gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE 91/1] gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757] gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 2740-80] gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457] gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33] gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2] gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9] gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33] gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX 330286] gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MJ-1236] gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10] gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE 91/1] gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757] Length = 857 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|229160352|ref|ZP_04288350.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803] gi|228623076|gb|EEK79904.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803] Length = 466 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTHLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I +DP + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRIATNLDPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLEKI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLDNLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWSI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G VI L Sbjct: 444 ESEKGNGTTVIIKL 457 >gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197] gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] Length = 933 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|325927603|ref|ZP_08188833.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] gi|325542037|gb|EGD13549.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] Length = 1181 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 9/250 (3%) Query: 228 LEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + R++ AE+ ++AKS FLA++ HE+RTP+ +LG SE++ + N Sbjct: 792 RRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL----NAK 847 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y+ I ++G HLL L+N+ LDL+RIEAG+ EL + + +E + A + Sbjct: 848 QRGYVDAIRKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELAHFMHPIADAR 907 Query: 347 NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + + + P V D +RQ+++NLL NA+KF G V +TV G + Sbjct: 908 GLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAER-GEVSLTVSQ-HGDALRFKV 965 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +D GPGI + + F QG A S G GLGL I Q + G+ +RS+L Sbjct: 966 RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1025 Query: 465 GVEVIAILPN 474 G + LP Sbjct: 1026 GTQFTVDLPL 1035 >gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 913 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 19/272 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E +++AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + E + Sbjct: 533 EKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VSCDDPEEKE 588 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+G I + + LL LIN+ILDLS+IE+G E +L + E M+Q + + Sbjct: 589 EYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEV 648 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407 E+ ++ D ++QV +N L+NAVK T G ++ +G++ G ++D Sbjct: 649 ELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVED 705 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G GI V F + QG GLGL I+++I+ G+ S G Sbjct: 706 SGVGIPLEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGST 761 Query: 468 VIAILPN------TRVLNFIPE-DNHESTQYK 492 A +P +++ P+ +ST K Sbjct: 762 FWAWIPCEVEIQEEDIISVSPQTPEQQSTPNK 793 >gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1719 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 18/245 (7%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F++ +SHELRTPL AI G ++E + T + + + L L Sbjct: 1469 LDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPL-TANRMLKVALNNSERLARL 1527 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +N+ILDL R+E+G+ EL + D++ + + ++ A +I I + VWAD Sbjct: 1528 VNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTAVE--AQVWAD 1585 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---------------QYISIKDNG 409 + Q ++NLL N +KF+ G + + ++G SI+D G Sbjct: 1586 FDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQG 1645 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI ++ ++ F Q ++ + G GLGL I +SI+ H G+ + S + +G Sbjct: 1646 RGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVESVVGQGSIFY 1705 Query: 470 AILPN 474 LP Sbjct: 1706 FTLPL 1710 >gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio coralliilyticus ATCC BAA-450] gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio coralliilyticus ATCC BAA-450] Length = 856 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 15/312 (4%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV------AKSLSDET 238 I + AT I ++ N+ + ++++A+ + A+ S Sbjct: 409 PHIRMCAKGATLTGINIAIREKTYRWNLSPIFVDKGINNIMAQGQDVTSFVDAEIQSQAA 468 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 RK AEE ++ FLA MSHELRTPLN ILG S++++ G ++N E++ + SG Sbjct: 469 RKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLK----GKISNTDDIEHLDVLCNSG 524 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 +HLL ++N+ILD S+IE G++ + + L++++ + EK I + + + Sbjct: 525 EHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPLCDEKGIGFVVETNVSN 584 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---GWTSGRGQYISIKDNGPGIAE 414 + +D+ + Q++ NL+SNA+KFT G V V++ G + IS++D G GI Sbjct: 585 NTFAHSDQVRLNQILFNLVSNAIKFTHE-GEVTVSLFCDGESPESRLNISVRDTGIGIER 643 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 I + F Q G GLGL I S++ GQ I S + G + +P Sbjct: 644 ERISHIFEPFVQAEATTTREYGGSGLGLAIVHSLVEMLNGQIEIESSIGYGTKFSLSVPI 703 Query: 475 TRVLNFIPEDNH 486 + + Sbjct: 704 ELTESVEQVETS 715 >gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 910 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 19/272 (6%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E +++AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + E + Sbjct: 530 EKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VSCDDPEEKE 585 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+G I + + LL LIN+ILDLS+IE+G E +L + E M+Q + + Sbjct: 586 EYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEV 645 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKD 407 E+ ++ D ++QV +N L+NAVK T G ++ +G++ G ++D Sbjct: 646 ELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVED 702 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 +G GI V F + QG GLGL I+++I+ G+ S G Sbjct: 703 SGVGIPLEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGST 758 Query: 468 VIAILPN------TRVLNFIPE-DNHESTQYK 492 A +P +++ P+ +ST K Sbjct: 759 FWAWIPCEVEIQEEDIISVSPQTPEQQSTPNK 790 >gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1131 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 7/352 (1%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 P + SA L + + + + +S + A I++ + Sbjct: 624 FAPSPIGEDGPPCALSAHLGVQVICADIRADASFANHHAISAAMGIAACCVTPILASNGQ 683 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + T + +S + E+ + A+L+++ R +AE Sbjct: 684 VLGTLNIYYDRPHLPTLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K FLA++SHELRTPLNAILG+S++++ E P + + I RS + +I Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSQLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 801 DDLLDMSVILSGKIRLQAERFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT GG V V + + ++D G GIA +P V F Sbjct: 861 AGRLQQVLTNLLSNALKFTPAGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 Q G+GLGL I++ ++ HGG S +G +LP Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGILDASSAGEGQGALFTIVLPFR 971 >gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226] gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226] Length = 857 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITSAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 970 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 9/271 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + A+ +++A+ LAKSRFLA+M+HE RTP+NA++ + + E N Sbjct: 595 ITERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLTRLALEE---EELN 651 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y+G + R+G+ LL +IN+ILD S+IEAG+ EL L ++ + + L A Sbjct: 652 PRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLIDDVVRPLSPNAH 711 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K I+ ++ L + D +RQV+ NL N +KFT G V + V +G + Sbjct: 712 DKAIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQ-GEVLLKVQLLKRQGDQV 770 Query: 404 S----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D+G GI+ E + F Q +I G GLGL I + ++ G + + Sbjct: 771 TLAFMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQLLVLMGSELEVE 830 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S EG + + + + Sbjct: 831 SVPGEGSNFAFTIQLALADDTSTPAASDPEE 861 >gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272] Length = 933 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74] Length = 933 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|325927602|ref|ZP_08188832.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] gi|325542036|gb|EGD13548.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] Length = 1191 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 143/267 (53%), Gaps = 11/267 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + ++D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 905 QLAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRLTTLPQYTRQGLR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSE 1023 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHES 488 L +G + LP V + +P + Sbjct: 1024 LGQGACFVVELPLHWV-STLPAVTPPA 1049 >gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 723 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 9/276 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 +T + + + E D ++A + ++ + E + ++ +SHE Sbjct: 437 VRALTDAVRRMREGRGDSRVEVRDSGELGQLADAFNEMA-EHLERLEKQRRAMVSDVSHE 495 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPL+ + G+ E + +E +G + L ++++++ DL+ +AG+ Sbjct: 496 LRTPLSNLRGWLEAAQDGVADLD-----RERMGMLVGETLLLQDIVDDLQDLALADAGKL 550 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 LS + +V + + +LRA + + + V AD + QV+ NLL NA Sbjct: 551 RLSPEPVDAGALVEQVVDSQRLRAAGAGLRLV--AEAGDVVVVADRTRLVQVVGNLLGNA 608 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 ++ T G V V SG + + D G GI ++P V F + + G G Sbjct: 609 LRHTPAPGTVTVRARR-SGGEAVVEVADTGVGIPAEDLPHVFDRFWRADKSRNRRTGGSG 667 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 LGL I ++++ HGG + S + EG LP Sbjct: 668 LGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLPLE 703 >gi|255658208|ref|ZP_05403617.1| sensor histidine kinase [Mitsuokella multacida DSM 20544] gi|260849517|gb|EEX69524.1| sensor histidine kinase [Mitsuokella multacida DSM 20544] Length = 434 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 3/231 (1%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 + + +F A SHELRTPL ++ +E+++ + + + ++ I D+ + + Sbjct: 202 LRQAYEKQRQFAADASHELRTPLAVVMASAELLQNDP--SIKSPFLRQVIDDVRDEVKKM 259 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L++++L ++R + +L +L ++ + ++Q A +K I++ + P + + Sbjct: 260 TKLVSDLLVVARSDNKALKLKPQKFNLSALIEQTARLMQPLADQKKIDLQAEHLPKV-EI 318 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 ADE+ +RQ++L L+ NAVK+T GG+V V T ++ D G GIA+ + V Sbjct: 319 QADEQKIRQLVLILVDNAVKYTPDGGKVSVRYESTEKGKVRFAVSDTGIGIAKEDQAKVF 378 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL IAQ I+ H G+ I+S+L +G L Sbjct: 379 DRFYRVDKARSREMGGNGLGLAIAQEIVHLHKGRIWIQSELGKGTTFFVEL 429 >gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SE11] gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11] Length = 949 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|187929794|ref|YP_001900281.1| integral membrane sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187726684|gb|ACD27849.1| integral membrane sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 631 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79 GL + ++ D L I VL + ++ + P W LI Sbjct: 32 KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 91 Query: 80 LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L + A G + + + + W + V G+ W + + + E+ Sbjct: 92 LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 151 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195 ++ ++I ++ +A+ + + L ++A + L G+L Sbjct: 152 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 209 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + T ++ + V+ + + E L A+ DE ++RA + KSRFLA+ Sbjct: 210 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 262 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 SH+LR P++AI+ E + +E+ + + + L +LDLS++E Sbjct: 263 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 318 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 + + + + L +++ E + A+ K + + +I P A+ +R+ + NL Sbjct: 319 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLAARIPPLPVYGMAEPVLLRRALFNL 378 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L NA+++T GG V + V + I + D G GIA + +++ Q + Sbjct: 379 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 435 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 QG+GLGL I + + G F +RS G L P + K Sbjct: 436 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 493 >gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli HS] gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ATCC 8739] gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli HS] gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 949 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|88860786|ref|ZP_01135423.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas tunicata D2] gi|88817381|gb|EAR27199.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas tunicata D2] Length = 919 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 12/246 (4%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 R +AE+ N AKSRFLA+MSHE+RTPLNA++GFS++ + ++ YI I Sbjct: 542 LQLARAQAEQANKAKSRFLANMSHEIRTPLNAVIGFSQLAKQT----DDSVVLGSYIDKI 597 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S LLN++N+ILD+S+IE+ + L + + L ++ I+ + A +K+++ Sbjct: 598 CLSSNTLLNIVNDILDISKIESEKLVLEQIPLDLHALLNRVSIIFEPIATQKSLQWQLDN 657 Query: 355 D-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNG 409 P+ D + Q+++NL NA+KFT G + +T I++ D+G Sbjct: 658 QLPNQQWYVGDPTRIEQILINLCGNAIKFTHS-GFIKLTARQICLNEQQAQLEIAVSDSG 716 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI + + +F Q + G GLGL I+Q + G I SK EG Sbjct: 717 IGIKSENLKMLFDAFTQADDSTSRRFGGTGLGLTISQELSHLMQGNITITSKEDEGSTFA 776 Query: 470 A--ILP 473 LP Sbjct: 777 FHCHLP 782 >gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] Length = 775 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 277 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 332 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 333 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 392 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 393 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 450 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 451 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 510 Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494 +P + E + +C+ Sbjct: 511 TVRIPLYGAQYPQKKGVEELSGKRCW 536 >gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431] Length = 933 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494 +P + E + +C+ Sbjct: 669 TVRIPLYGAQYPQKKGVEELSGKRCW 694 >gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] Length = 1190 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 127/266 (47%), Gaps = 21/266 (7%) Query: 238 TRKRAEEENL-----------AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 RK AEE AK++FLA MSHE+RTP+N +LG ++ + P+ Sbjct: 666 ERKAAEEALRVAKEKAEAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRDTDLDPV---- 721 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K Y+ SG+ LL LIN+ILD S++EAGR EL ++ L +V+ + AQEK Sbjct: 722 QKAYVKTARESGRSLLELINDILDFSKLEAGRTELEKAPFRLKTVVKSIADLFMPIAQEK 781 Query: 347 NIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ---- 401 + I + V D +RQV+LNL+SNAVKFT G + ++V Sbjct: 782 GLTIDLNYPADVPQVVSGDAGRLRQVLLNLVSNAVKFT-EIGSIDISVSLDEDDPVQPVF 840 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 ++KD G GIA+ + T+ F + + G GLGL I++ + + G+ + S Sbjct: 841 RFTVKDTGIGIAKDKHQTLFGDFVTIDTSYTKKQGGTGLGLAISKRLSSLMDGEIHVESL 900 Query: 462 LREGVEVIAILPNTRVLNFIPEDNHE 487 G +P R + I E Sbjct: 901 PGAGSTFHFCVPLERADDAIELPEPE 926 >gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905] Length = 949 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 467 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 11/312 (3%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 + S V ++ ++ LA + L T + K ++ A +D Sbjct: 145 ILHSMTLATVTGVILTTVAALLVAAWLARRITEPLRALIDATRRIQKGDLGPRLSIATRD 204 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + ++ + + E + +A ++HELRTPL I G E+I+ Sbjct: 205 EFGEVAQAFNEMALQLSRIEET----RRHLVADVAHELRTPLTIIQGQLELIQQGVKRAE 260 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + I L L+ ++ LS EAGR L ++ L + + Q+ Sbjct: 261 P-----ETLLPIQDEVMRLTRLVGDLHQLSLAEAGRLPLEKTWTDLTALAGRIVDNFQIE 315 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+ K I + + S+ V+ D M QVI+NL+ NA+++T GG + + V G Sbjct: 316 AEAKEITLSLEASDSIP-VYVDPHRMTQVIVNLVGNALRYTPTGGTIRIVV-RQEGSEAI 373 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 +++ D GPGI +P + F + A E G GLGL IA+ + HGG+ S+ Sbjct: 374 LAVSDTGPGIRPEHLPHIFDRFFRSDEARSREEGGTGLGLAIAKEFVEAHGGRIGAESRP 433 Query: 463 REGVEVIAILPN 474 EG LP Sbjct: 434 GEGTTFTVRLPK 445 >gi|304320353|ref|YP_003853996.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299255|gb|ADM08854.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 575 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 172/444 (38%), Gaps = 28/444 (6%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105 R P + + + + + I L + + L+ Sbjct: 1 MRELPTRLFVITVGVSAVSATGRLDHLL-CVAIYLLILGSQLTDAIVWYRLSRCTESALP 59 Query: 106 WRIWLLVGQIAI-GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 W V +C+ L + + P I + L + N + + Sbjct: 60 WHCRFGVLSAFQASMCYGLFPVYVWISDIPAGQAIAYTMLSGNLLHTALHQNTRILVMIS 119 Query: 165 LSFFPVV-VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + P+V +A M++ + + ++ ++ Q E++ Sbjct: 120 AAIPPLVYMAGLPIYQMAVDPSFYLRDCAALLTIEMLVILALLSGAKAIRTVTQQREEER 179 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 AE + AKS FLA+MSHE+RTPLN ILG +E + + Sbjct: 180 AAAEQ----------------ASRAKSVFLATMSHEIRTPLNGILGMAEALAASAL---- 219 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E + I SG LL ++N LDLS+IEAG+ E+ ++ L + + +A Sbjct: 220 PEDSRSKAETIRDSGALLLQMLNNSLDLSKIEAGKLEIDKAPFRLDRAIERVHALFAQQA 279 Query: 344 QEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQ 401 + + ID SL + DE+ + Q++ NL+ NA+KFT GG V + + G Sbjct: 280 RNAGLTFTTDIDRSLPMLREGDEQRLTQILTNLIGNALKFTQSGG-VTIGLHRGKGATDI 338 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +S+KD G G+++ + + F Q A G GLGL I +++ A GG+ +++S Sbjct: 339 VLSVKDTGIGMSDEQQAKIFMPFTQAEGATTTRRFGGTGLGLSIVKALTAQMGGEVILKS 398 Query: 461 KLREGVEVIAILPN-TRVLNFIPE 483 G E LP +PE Sbjct: 399 VAGVGSEFSVCLPLPEAATKSLPE 422 >gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella gracilis ATCC 19624] gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella gracilis ATCC 19624] Length = 814 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 135/319 (42%), Gaps = 11/319 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 AV F P A+ + LD + + + + + + A Sbjct: 211 VQAVPEEFRPTFEAMQRISGDLHRELDQRELALTSLRQALARLLPDAPQDPATQGMDLGA 270 Query: 220 EKD---DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 D ++ E E + E ++ AE N AKS FLA MSHE+RTP+N I+G + + Sbjct: 271 LADLVLQVVREREADRVTLQEAKQAAEAANRAKSEFLAVMSHEIRTPMNGIVGMTGL--- 327 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 +G + Y+ + RS LL +IN++LD S+IEAGR L L +VR + Sbjct: 328 -ALGTTLTPQQRGYLTMVRRSADALLGVINDVLDFSKIEAGRLTLDPRPFRLHALVRSTL 386 Query: 337 IMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVG 394 L +A+EK + + + + D +RQ+++NL+ NA+KF+ G V V Sbjct: 387 ASLDNQAREKGLRLAYEPAEDFSHRLIGDPGRLRQILVNLVGNAIKFSETGAITVRVRTE 446 Query: 395 WTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 ++D G GI + + F Q +I G GLGL I ++ Sbjct: 447 ALRDGQVVLRFEVQDQGIGITPSQQQAIFQPFTQADASITRHYGGTGLGLAICGKLVQAM 506 Query: 453 GGQFLIRSKLREGVEVIAI 471 G+ +RS +G Sbjct: 507 EGEIGVRSAPGQGSTFHFT 525 >gi|260438167|ref|ZP_05791983.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876] gi|292809355|gb|EFF68560.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876] Length = 986 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 108/472 (22%), Positives = 187/472 (39%), Gaps = 51/472 (10%) Query: 38 ITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL--AVYAANLSLGKKVMN 95 + LH++ +S + +L F ++ + + + + L + Sbjct: 202 LILHIKGKKDISILSLSVGVLAVASWLIFDNMLYQYIFKIYYIDGILGYLVIMLAPAFFD 261 Query: 96 SDIKIGEVYVWRIWLLVG---QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSIS 152 + + Y + V I + +T L + L + + IA Sbjct: 262 HYLNREQEYRYCRLYTVSIVVVILNFIVFTTLHFTGVVDFYSSRLPMNIVLAIQIASVAY 321 Query: 153 ALSN---------FMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L + + FL F + + + ++ L + Sbjct: 322 TLIMDLIKGYIKEYKVIAQGFLGFAICALVEIIMINFGNNRNTDGMFMIIGLYLLLIMAV 381 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 + + A + N KS FLASMSHE+RTP Sbjct: 382 VNFIKNNIRIREKAVY----------------------ALKANQLKSNFLASMSHEIRTP 419 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 +NAI+G +++I + ++ KEY G+I +G LL++IN+ILD SRIE+G+ EL E Sbjct: 420 INAIMGMNDMI----LMSDPDKAIKEYAGNIRSAGDTLLSIINDILDFSRIESGKIELVE 475 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 + S I ++ + I+M++ +A+ K +E K D + S ADE +RQ++ N+L NAVK+ Sbjct: 476 NTFSTISMLNDVIMMIKGKAENKGLEFIVKADKEMPSSFKADEVKIRQILTNVLGNAVKY 535 Query: 383 TAIGG-RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 T G + + + + +++ D G GI E + F + S+ +G GL Sbjct: 536 TEKGSIELIMKGSYVEDKYVLNVTVTDTGIGIKEEFKDKIFNKFERAD--TMSSVEGTGL 593 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 GL I + + GG SK EG E +P ED+ YK Sbjct: 594 GLSITKKYLGIMGGTISFDSKYGEGSEFYISIPLNV------EDDTPIGDYK 639 >gi|227532779|ref|ZP_03962828.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189613|gb|EEI69680.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 636 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + ++ ++ +I Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + A + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLSKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium violaceum ATCC 12472] gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium violaceum ATCC 12472] Length = 1234 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 5/272 (1%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTP 263 T L ++N ++ Q + + ELE ++ + ++ ++ + KS FLA+MSHELRTP Sbjct: 551 TEELQQANAQMEESQQQLEQQNRELEESRLEQEAKARQLDQASKYKSEFLANMSHELRTP 610 Query: 264 LNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 LN+I+ S+++ G + +E K + IHRSG+ LL LIN++LDLS++EAGR ++ Sbjct: 611 LNSIILLSKMMVNNDDGAVKDEALK-WAQVIHRSGEDLLRLINDVLDLSKVEAGRMDVHL 669 Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 + ++ ++ E M + A++K +E V +D + Q++ NLL+NA+KFT Sbjct: 670 ATLNSRELCAELQGMFEHLARDKGLEFVVDDRLQSDFV-SDPDKLSQILRNLLTNAIKFT 728 Query: 384 AIGGRVHVTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 GG V +++ IS++D+G GI + + +F Q + G GLG Sbjct: 729 RSGG-VTLSMSRHPDLPLPVRISVRDSGIGIPAEKKSVIFEAFQQADGSTSREFGGTGLG 787 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 L I+ GG + S EG E I LP Sbjct: 788 LTISLRFAQMLGGTIELESAPGEGSEFIVWLP 819 >gi|322708265|gb|EFY99842.1| putative histidine kinase HHK1p [Metarhizium anisopliae ARSEF 23] Length = 2550 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 30/312 (9%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-LAK 249 + L I+Y S + AE +++ + A + + E +A+ AK Sbjct: 1894 VTVLQLLVNQIGISYSNALSMKSVEKISAENRGMVSVQKRALAKALEAETKAKHAEAEAK 1953 Query: 250 SR-------------FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 FLA++SHELRTPLN ++G SE++ + N E I Sbjct: 1954 RNVKLAEEAAKAKAIFLANVSHELRTPLNGVIGNSELLRDSDL----NREQLEMADSIRV 2009 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML----QLRAQEKNIEIFQ 352 S LL +IN+ILD S++EA + +L A + ++VRE + + + + +KN++I Q Sbjct: 2010 SADLLLTVINDILDFSKMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQ 2069 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDN 408 I+ ++ D + QV+ NL+ N++KFT G V + + ++D Sbjct: 2070 DINLPPMLIYGDPIRLHQVLGNLIGNSLKFT-EDGSVTIGARLDAETKDSATLTFWVRDT 2128 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE 467 G GI ++ + F Q + G GLGL I +S++ G+ + S+ EG Sbjct: 2129 GIGIPAQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTT 2188 Query: 468 --VIAILPNTRV 477 + Sbjct: 2189 AWFTVTFEKAKA 2200 >gi|229189481|ref|ZP_04316498.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876] gi|228594072|gb|EEK51874.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876] Length = 466 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---AQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 384 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ +G VI L Sbjct: 444 ESEKDKGTTVIIKL 457 >gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489] gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|187478370|ref|YP_786394.1| virulence sensor protein [Bordetella avium 197N] gi|115422956|emb|CAJ49485.1| virulence sensor protein [Bordetella avium 197N] Length = 1219 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 138/271 (50%), Gaps = 9/271 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E E ++ A+ N AKS FLA+MSHE+RTP+NAI+G E+ E P + Sbjct: 698 LTERIRLLRDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAIIGMLEL---ELRRPADQ 754 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T + + + S + LL+LI +ILD+S+IEA R ELS L ++ I + Q A+ Sbjct: 755 ATDRSALQITYDSARSLLDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLAR 814 Query: 345 EKNIEIFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRV-HVTVGWTSGRGQY 402 + + + +IDP V D ++QVI NL+SNA+KFT +GG + + V Sbjct: 815 QHGLSLTLQIDPPHPPHVLLDATRLKQVISNLVSNALKFTEVGGVIVSLKVRTEEDGRAK 874 Query: 403 IS--IKDNGPGIAEGEIPTVLTSFGQG-SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I + D+GPGI+ + + F Q A + G GLGL I++ ++ GG F + Sbjct: 875 IELAVDDSGPGISSADRQRLFEPFTQVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDLS 934 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 S +G + +L N + + E T+ Sbjct: 935 SIPGKGTRIDVLL-NADITTAVEETASPETE 964 >gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT 5369-93] gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT 5369-93] Length = 857 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 16/327 (4%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVL-NFIPEDNHESTQ 490 G LP V P+ + Sbjct: 695 GTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1182 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 3/291 (1%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 LA + + L ++NV++ + EL A+ R E+ + KS F Sbjct: 432 LADSQARLKEQQAELEQTNVQLEQYAQRLERQKDELVTAQEALSANAARLEQSSRYKSEF 491 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA+MSHELRTPLN+ L + +++ G L +E + Y IH S LL LIN+ILDLS Sbjct: 492 LANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR-YAETIHASNSDLLVLINDILDLS 550 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQV 371 ++EAG+ + +SL +++ + A K + + + P ++ +D + + Q+ Sbjct: 551 KVEAGQITIEPETVSLDALLQSLRETFEPMAAAKGLALALERTPGTPATLVSDGQRVTQI 610 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + NLLSNA+KFT G V +T+ R + ++D+G GIA ++ + +F Q + Sbjct: 611 LRNLLSNALKFT-EHGAVTLTISAEGQRMVRLDVRDSGIGIAADKLELIFEAFQQADGST 669 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 G GLGL I++ GG+ + S+ +G LP P Sbjct: 670 SRQYGGSGLGLSISREFARLLGGRIGVASEPGKGSVFTLWLPLDPAFAQAP 720 >gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella dysenteriae Sd197] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 425 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 7/241 (2%) Query: 238 TRKRA---EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 R+ + + +F+A SHELRTPL I +E++ + +E+ + + +I Sbjct: 184 ARRAMVPIQAAWEKQQQFVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIR--VTNI 241 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 R + + L+ ++L L+R +A + EL A+SL ++V + AQ + + + Sbjct: 242 VREVRRMTRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAV 301 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 L V D + + Q+++ LL NAVK+T G + +T G G ++++D+G GI Sbjct: 302 YEQLELV-GDRERLYQLLVILLDNAVKYTPPPGHILIT-GVRQGSHILLTVEDSGQGIPP 359 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 ++P V F +G A + G GLGL IA+ I+ HGG+ + SK+ G + +LP Sbjct: 360 EDLPRVFDRFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLPV 419 Query: 475 T 475 Sbjct: 420 K 420 >gi|332995573|gb|AEF05628.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2] Length = 1121 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 175/375 (46%), Gaps = 17/375 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + L++ T A ++ SI L +P + + + ++S Sbjct: 555 SIDLLKTLTTPMSQFIALTFALSCVSASILYLVYLQVPSTSDANVLFADMLIKIFFLLS- 613 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241 ++ LS+ + + +K L QA D I EV ++ + Sbjct: 614 ---------IIIGVLSWLFILARSANRIALKELRSQASALADEIGAHEVTSIALEKAKNA 664 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE N AKSR+LA +SHELRTPLN +LG+S+++ +E ++ +G + R+G+HL Sbjct: 665 AEAANEAKSRYLAGLSHELRTPLNVMLGYSQLL---GKDGSLSEKQRDTMGIMRRNGEHL 721 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 NLI +L++S+IEAGR L ++ I+++ I M +L+A +K + I L Sbjct: 722 ANLIEGLLEISKIEAGRLTLHRDEFNIRAILKQLIDMFELQASKKGLNFHTNISTKLPDV 781 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D++ +RQ+++NL+SNA+K+T G V V + + + D G GI+E T+ Sbjct: 782 VVGDKQRLRQILINLISNAIKYTET-GNVRFDVQYRNE-VAIFVVVDTGSGISEAHKETI 839 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F Q A G GLGL I++S+ GG+ +S L +G L R++ Sbjct: 840 FQPFEQIRNTHTQAIGGTGLGLTISRSLTELMGGELSFKSLLGKGSTFTLRLMLPRIIQH 899 Query: 481 IPEDNHESTQYKCYA 495 + S Q Y+ Sbjct: 900 QTTPENHSQQVCAYS 914 >gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042] gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|225390426|ref|ZP_03760150.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme DSM 15981] gi|225043482|gb|EEG53728.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme DSM 15981] Length = 760 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 146/316 (46%), Gaps = 30/316 (9%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 I V I A +L + F T + + ++++K L + + E Sbjct: 195 ITHTTVASIGTALLLTFFIVFLTMYSNMVERTSIKELKAR-------------ERELHEA 241 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK--EYIGDIHR 296 A++ N AK FL+ MSHE+RTP+NAI+G + + G ++ + + + I Sbjct: 242 LLLAQKANNAKKDFLSRMSHEIRTPMNAIIGMAAI-----AGAHLDDRGRIEDCLTKITF 296 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 S +HLL+LIN++LD+S+I+AG+ ++ + + + ++ +A+ + I Sbjct: 297 SSRHLLSLINDVLDMSKIDAGKLTVNHEPFRIGQLTESVVSVIDSQARTQEKIFECDISG 356 Query: 357 -SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPG 411 + D + Q++LNLLSN+VKFT GG + + + + + D G G Sbjct: 357 IRQERLIGDYLRVNQILLNLLSNSVKFTPRGGMIRLEIKEIEDQKGRTFLQFVVSDTGIG 416 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++E + + F Q I G GLG+ I +++ GG ++S+L EG Sbjct: 417 MSEEFLERLYLPFEQADGQISQKYGGTGLGMAITNNLVELLGGSIDVKSRLGEGTVFTVK 476 Query: 472 LPNTRVLNFIPEDNHE 487 LP +PED+ E Sbjct: 477 LPFD-----LPEDSEE 487 >gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 720 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +A L+ A S S + + A + + AKS FLASMSHELRTP+N + G E+ Sbjct: 208 LASLKDALSASKKAQAEAIDASKAKSEFLASMSHELRTPMNGLFGMMELAIDNPHKSG-- 265 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 EY+ +G+ LL LIN++LDLS+IEAG+ + +++ L+ ++ + + + Sbjct: 266 ----EYLKKAKNAGRQLLVLINDVLDLSKIEAGKLRIERTSVDLLQLMDDVTSVQSANCR 321 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRG 400 K + + +L + D + Q++ NLLSNA+KFT G V + +G Sbjct: 322 LKKLAFDYQKQTNLPAYIVGDPTRIAQILHNLLSNAIKFTQQ-GTVTLRIGVFVTEKRHW 380 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I ++D G GI + T+ F Q + G GLGL IA+ + GG+ ++S Sbjct: 381 LTIDVQDTGMGIPPEKTRTIFNKFEQADQSTTRIHGGTGLGLSIAKQLTDLMGGKLTVQS 440 Query: 461 KLREGVEVIAILPNT 475 K+ +G +P Sbjct: 441 KVDKGSCFTFSVPIE 455 >gi|301052938|ref|YP_003791149.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375107|gb|ADK04011.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 466 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWKI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] Length = 793 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 16/371 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 TL L+ + + A A +N L L + ++ I S Sbjct: 138 TLSALMMSSEAVTRQAALVTALAAAHAEQTVAATNQALSRIFVLGLTGTALIMAAALIFS 197 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL------IAELEVAKSLS 235 M + A + +A L + E + Sbjct: 198 MRKAHAISTATQSAAAKLQRLASGEQSGPPTAKDEIRAVFAALDTLAVSLQEKKRIAERL 257 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + RAE KSRFLA+MSHE+RTP+N +LG +EV+ + P I Sbjct: 258 QQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRLTP----EQTSCTSTIL 313 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 S + LL ++N+ILD S++EAG+ ++ + +L D++ + ++ A K +EI I Sbjct: 314 ASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEICIDIP 373 Query: 356 P-SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ--YISIKDNGPGI 412 + D +RQ+++NL+ NAVKFT G + +T+ + + I ++D G GI Sbjct: 374 EHTPPEFIGDSGRVRQILMNLVGNAVKFTLE-GHISITLNYDARHNIPLCIDVRDTGVGI 432 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA-- 470 E I + +F Q +G GLGL I+ + GG+ + S+ +G Sbjct: 433 PEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAGKGSCFTVCL 492 Query: 471 ILPNTRVLNFI 481 LP Sbjct: 493 TLPVAAPSPAP 503 >gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|262383486|ref|ZP_06076622.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294384|gb|EEY82316.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 638 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + + ++ + + F + ++ + + QA+K L+ Sbjct: 344 LLPKDAILLNFPFKAQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405 IE +K + +++D++ + Q + N+L NA+KFT+ G + + +++ + + + Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSADAQDVRLYV 573 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629 Query: 466 VEVIAIL 472 + + Sbjct: 630 CRISLVF 636 >gi|58581450|ref|YP_200466.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426044|gb|AAW75081.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1210 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 808 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 863 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + +++ A++K Sbjct: 864 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQK 923 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS---GRGQY 402 + +D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 924 QLAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTER-GSVHLRIAALPQHTQQGIR 982 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 983 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSE 1042 Query: 462 LREGVEVIAILPNTRV 477 L +G + LP V Sbjct: 1043 LGQGACFVVELPLRWV 1058 >gi|116496229|ref|YP_807963.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|239630680|ref|ZP_04673711.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067831|ref|YP_003789854.1| signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|116106379|gb|ABJ71521.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|239526963|gb|EEQ65964.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440238|gb|ADK20004.1| Signal transduction histidine kinase [Lactobacillus casei str. Zhang] Length = 636 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + ++ ++ +I Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + A + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1194 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ T + T + Y I R+G Sbjct: 814 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 869 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 870 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 929 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 930 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 988 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG+ A S G GLGL I Q + GG + S+L G + LP Sbjct: 989 KARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1048 Query: 476 RVLN 479 V + Sbjct: 1049 WVAS 1052 >gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046] gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68] gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180] gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|313905267|ref|ZP_07838634.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] gi|313469878|gb|EFR65213.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] Length = 1224 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 105/429 (24%), Positives = 179/429 (41%), Gaps = 47/429 (10%) Query: 62 IGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRI---------WLLV 112 +G W + F +++L V A NL L +++ + +V Sbjct: 68 LGWWMVRISNFFVFALTIFIVCAFNLYLSDLLIHEGGLSYPPKRLKAVYIMTGIGEIFVV 127 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYL-TIYKSATLLIALSISALSNFMLPYAVFLSFFPVV 171 + G +T + + I A LLI LS+ L V +S F + Sbjct: 128 ANLYTGFYYTFDATNHYSRASGAVVSFIIPIAALLIQLSVIIKYGKRLSRIVRISLFLFI 187 Query: 172 VALSTQAIMSMHVLDISLAGM--LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + +I+ + +SL + + A+ + ++ L + + E Sbjct: 188 LVPFAFSILQFFIYGLSLTTISIVGMAILLYIFVLLDLNAAKEAKEEAEYE--------- 238 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 N AKS FLA+MSHE+RTP+NAILG +E+I E+ ++ + Sbjct: 239 ----------------NRAKSHFLANMSHEIRTPINAILGMNEMILRES----DDPEIQA 278 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I +G LL L+N+ILD SRIEAG+ E+ + ++ + + M+Q RA++K +E Sbjct: 279 YADSIKLAGNTLLGLVNDILDFSRIEAGKMEILPVDYDVSSLLNDLVNMIQSRAEDKGLE 338 Query: 350 IFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR----GQYI 403 + ++ + DE ++Q I+N+L+NAVK+T G V + Sbjct: 339 LVLDFAENMPKLLHGDEVRIKQAIMNILTNAVKYTEKGSVTFRVGFERIENDPANVYLLV 398 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GI ++ + F + +G GLG+ I +SI+ G + S Sbjct: 399 SVTDTGIGIRPEDLEKLFHEFERIEEKRNRNIEGTGLGMNITRSILEMMGSHLEVSSIYG 458 Query: 464 EGVEVIAIL 472 EG L Sbjct: 459 EGSTFSFRL 467 >gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 634 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 140/267 (52%), Gaps = 5/267 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + + + ++ N K FLA +SHELR+PLN ILG++ +++ N Sbjct: 245 ITERKQIEKEREILYEESQRANRIKDEFLAILSHELRSPLNPILGWASLLKTSKF---NA 301 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +T K + I R+ LI ++LD+SRI G+ L+ + L I+ + ++QL A+ Sbjct: 302 DTIKHGLEIIERNANLQTRLIEDLLDVSRILRGKLILNTYPVELPSIIASALEIVQLSAK 361 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K+IEI KID ++ +V AD ++QVI NLLSNA+KFT GG+V + + + I+ Sbjct: 362 AKSIEIETKIDANVGAVQADPSRLQQVIWNLLSNAIKFTPSGGKVTIYLERI-DKYAQIT 420 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 I D G GI++ +P V F Q G+GLGL I ++ HGG +S Sbjct: 421 ISDTGKGISKEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEG 480 Query: 464 EGVEVIAILPNTRVLNFIPEDNHESTQ 490 +G I LP + ++N STQ Sbjct: 481 QGASFIVRLPVIAPQSTTYKENKISTQ 507 >gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 508 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 12/240 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +SRFLA MSHE+RTP+N ++GF++++ + N EY+ I RSGQ LL +I++I Sbjct: 136 QSRFLAMMSHEIRTPMNGVIGFTQLLRDTPL----NPRQMEYVDLITRSGQSLLVIIDDI 191 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKG 367 LD S++ AG +L + L ++ + I +L A++KNI I IDP + S + D Sbjct: 192 LDYSKVSAGHLQLERAPCELRRLIEQHIQLLHTGARQKNITIDLHIDPLVPSLIIGDAVR 251 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + Q++ NL+SNA+KFT GG VH+ + R + + D G GI + F Q Sbjct: 252 IGQIVSNLVSNAIKFTHHGG-VHIHLVPDGPRCLALHVTDTGIGIPPEAHRRIFEPFSQA 310 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFI 481 + G GLGLPI + + GG + S+ G A P TR LN Sbjct: 311 DGSTTRRYGGTGLGLPITRLLCTLMGGTLTLSSQPGHGSTFTATFTYELPSPATRPLNSP 370 >gi|67459382|ref|YP_247006.1| histidine kinase sensor protein [Rickettsia felis URRWXCal2] gi|67004915|gb|AAY61841.1| Histidine kinase sensor protein [Rickettsia felis URRWXCal2] Length = 497 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLETNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++ +I+++ Sbjct: 299 --DAEKNKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + ++ + AD K ++QV LNLLSNAVKFT GG V + + + Sbjct: 357 PRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ EG + Sbjct: 477 SKINEGTTITITF 489 >gi|331092424|ref|ZP_08341249.1| hypothetical protein HMPREF9477_01892 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401267|gb|EGG80856.1| hypothetical protein HMPREF9477_01892 [Lachnospiraceae bacterium 2_1_46FAA] Length = 437 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 134/281 (47%), Gaps = 6/281 (2%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 M+ A + T L + ++ + ++++ EL+ D+ + E + Sbjct: 162 MMGIAFLLAKWQTARLIRPINELNLEEPLENEVYEELQPLLEGLDKRNREKEAVAQMRKE 221 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F A++SHEL+TPL +I G++E+++ + P E + + I+ L+ L+ +I+ L Sbjct: 222 FSANVSHELKTPLTSISGYAEIMKSGLVKP---EDMQNFSERIYTEASRLITLVEDIIKL 278 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S+++ G+ EL + + L + RE L L+A++K I+I +P + + ++ Sbjct: 279 SKLDEGKVELEKEEVDLFMLCREVCSRLSLQAEKKRIKIEVTGEP--VFYRGIRQILSEM 336 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 I NL N +K+ GG++ V G T + I I+D G GI E + + F + + Sbjct: 337 IYNLCENGIKYNVEGGKLTVWAGNTLQGKKVI-IRDTGIGIPEEDRERIFERFYRVDKSH 395 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL I + H + ++S++ +G + + Sbjct: 396 SKQSGGTGLGLSIVKHGAMLHQAEVQVKSEVGKGTTMEIVF 436 >gi|282897504|ref|ZP_06305505.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9] gi|281197599|gb|EFA72494.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9] Length = 647 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 155/344 (45%), Gaps = 21/344 (6%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + L+++++ + +L +++AL+ + + ++ + LA +LA L Sbjct: 299 WVILAVASVRDALL---GLDQIKLILIALTVGLVGASLLVSLYLAPLLANPLEELRDYAL 355 Query: 206 HLFKSNVKI-----------LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 ++ + D ++ L+ + K A+ N KS+FLA Sbjct: 356 NIHSHHAVQPIPRNFRIKEFNQLAQALDQMVERLKAWTEELEMAWKEAKSANTVKSQFLA 415 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 + SHELR PLN I+ ++ + E E++ + HLL +IN++LD+S+I Sbjct: 416 NTSHELRNPLNIIINCVRLVRDGLCD--DKEEELEFLKKADDTAIHLLGIINDLLDISKI 473 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG+ + + L ++ E I + + ++K +++ +I + + D ++QV++N Sbjct: 474 EAGKLSVVMIPLELRQLLLEVINLQSVNVEKKGLQLKCEILEQIIPIKGDRIKLKQVLIN 533 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 ++ NA KFT G + ++ IS+ D G GI + + F + Sbjct: 534 VIGNATKFTEE-GSITISTKTIQQNSKLYVVISVVDTGIGIDPQQQHKLFRPFVMVDGST 592 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 +G GLGL I+++++ GG+ + S L G V ILP Sbjct: 593 TRKFEGTGLGLAISRNLIELMGGKISLESLGLNRGTTVKIILPL 636 >gi|229029070|ref|ZP_04185169.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271] gi|228732350|gb|EEL83233.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271] Length = 466 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAMTLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|26990435|ref|NP_745860.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985405|gb|AAN69324.1|AE016570_1 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 750 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 153/370 (41%), Gaps = 15/370 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L + T ++ L + + L + Sbjct: 135 LGAVHHRLYATGLASLLWMGVFLCGLAVALSGLFYRLVTRHLQVMAEFARRIGAGQWQEP 194 Query: 183 HVLDISLAG-------MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 L + + I + + L Q ++D+L A +E + Sbjct: 195 LRLGRRRSSRPDEIDTVANALDDMRRAILSDIERRERDRLELQDKRDELQAMVERRTASL 254 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + AE NLAKSRFLA+MSHELRTPLN ILG +E++ + + ++ + ++ Sbjct: 255 ARAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRGGRLEVAD----RQRVEALY 310 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 ++G+ LL ++NE+L +R+E G SL + +E + +L+ A E + ++D Sbjct: 311 KAGEGLLAILNEVLYFARLEEGESRAERVVFSLRQLCQEVLALLEPMAMENADTLQLQVD 370 Query: 356 PSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPG 411 L++ + E+ +RQV+ NLL+NA+KFT G V V + +S++DNG G Sbjct: 371 EQLAAYQYGAEQYLRQVLSNLLANAIKFTEHGQVQLTVQVLANNECSQRLRLSVRDNGIG 430 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + F Q S A+ G GLGL I + ++ GG + S +G Sbjct: 431 IEPAVQAKIFDRFVQASEAVTQRYGGTGLGLAICKHLVEKLGGSIGLESVQGQGSCFWFE 490 Query: 472 LPNTRVLNFI 481 L R Sbjct: 491 LDMARGQPVS 500 >gi|125974566|ref|YP_001038476.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714791|gb|ABN53283.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 387 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 147/350 (42%), Gaps = 22/350 (6%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 + S + ++ +FM + + + ++ ++ + Sbjct: 11 TRIVIYSVLAHLVIAGVGFISFMC--------KLIDETHADNCFLLGMLMAQNIFVLFLE 62 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE----------- 244 L ++ + +N K+ +E I L+ E + Sbjct: 63 ILIVVAIMSV-IVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIK 121 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLN 303 + KS F +MSHEL+TPL+ ILG ++I + + + ++ I ++ LL Sbjct: 122 SSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLR 181 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN ILD+SRI++G + + +++ +V + + ++K + + Sbjct: 182 LINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAV 241 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + ++ILNLLSNAVKFT GG++ V V I +KD G GI + + Sbjct: 242 DVDKIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFER 300 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + Q + + +G G+GL I +S +A H G +RSK +G E I LP Sbjct: 301 YRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 350 >gi|295400058|ref|ZP_06810038.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294977837|gb|EFG53435.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 468 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 7/325 (2%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 +I + + + L+ + + + L + L + YH+ Sbjct: 147 GAIYLYIPLASIQELTKEVAMIWLPLAALFVFVLLIAGKRLVRHITGPLKEMEEVAYHMS 206 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + N + D++ ++AK+ + + AEE ++ K FLA++SHELRTP++ + Sbjct: 207 QGNYEAQIPVRTNDEI---GKLAKAFNIMAKAVAEE-DMRKREFLANVSHELRTPISYVK 262 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I + E ++++ I+R + L+ ++LDL+++E L + + Sbjct: 263 GYSEAILQGLV--KTKEEQRKHVQLIYREAGRMERLVRDLLDLAQLEGNSVPLQKVPLVF 320 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + + + Q+K I + ++D + + D + QV+ NLL NAV++T G+ Sbjct: 321 AQVIEDTVAKYEPFLQKKQITLAVELDHDII-LEGDADRLEQVVQNLLDNAVRYTPDAGK 379 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + + S + + I+D+G G+ + ++ + F + A E G GLGL I + I Sbjct: 380 IDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQRFFRVDQARSRKEGGTGLGLAIVKQI 439 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 ++ H G S+ +G+EV+ LP Sbjct: 440 ISLHDGTISFFSEEGKGMEVVIELP 464 >gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 523 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 6/246 (2%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 A +K EE ++ F++ +SHELRTP++ I GF+E + G E Y+E Sbjct: 278 ANVRDITAQKMEEE---RQNTFISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQYREA 333 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I L I ++LD+SRI AG L S ++L +V + + + E IE Sbjct: 334 LQVISEEADRLARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGE-RIEF 392 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 ++ L V+AD + MRQV+ NL+ NAVK++ GG + + G + + D G Sbjct: 393 EIRVPDDLPPVYADYERMRQVLTNLIENAVKYSPNGGVIRIGA-RAEGDMAIVYVSDQGI 451 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E + F + ++ + G GLGL I ++I+ HGG+ + S++ G Sbjct: 452 GIPPEEQDLIFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFF 511 Query: 471 ILPNTR 476 +P +R Sbjct: 512 TIPLSR 517 >gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 820 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 15/275 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 L E A + +E + K+ F++++SHELRTPL ++LGF+++I + + Sbjct: 335 RLAGEERRATIILVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLV 394 Query: 283 NN-------------ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 + +E + I GQ L L++++LD++++E+GR E + + +SL Sbjct: 395 APALTEATPKTWRGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLA 454 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 + + + A K I + K+ +L + D + QV +NLL NAVKFT G + Sbjct: 455 ETAGHAVRAVAGLAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFT-EHGAI 513 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V G G ++++D+G GIA ++ + F Q + +G GLGLPI + I+ Sbjct: 514 VVE-GSVDGSEIRVAVRDSGSGIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQII 572 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 HGG+ S+ +G LP P Sbjct: 573 ERHGGRIWAESEPGQGSVFRFTLPILAEAADTPAA 607 >gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 1129 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 170/360 (47%), Gaps = 15/360 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + + + + Y+ + L+I + + +F PV A + +++ Sbjct: 560 VWMVAQLNSRIGHYIGVLSLLALVIGAILGVI-------YFQATFAPVAEAEAVGSVL-- 610 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 L L + A F + + A I + + + ++ A Sbjct: 611 FTLYFILLIIAGVAAWLFVLAQESRRVAQEESNRQTALLMREIEAHKRTDAKLQKAKEAA 670 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E NLAKSR++ +SHELRTPLNAILG+++++E +T P ++ I + RS +HL Sbjct: 671 EAANLAKSRYVVGISHELRTPLNAILGYAQLLERDTSIP---PHRRDAIRVVRRSAEHLS 727 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 LI+ +LD+S+IEAGR L+ + + D + + + M +L+A K I+ L V Sbjct: 728 GLIDGLLDISKIEAGRLHLTRDEVRIADFLDQLVDMFRLQATAKGIDFVYVRPDRLPAVV 787 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 + DEK +RQV++NLLSNA+KFT GRV + V + + ++D+G GI + + Sbjct: 788 YTDEKRLRQVLINLLSNAIKFTDR-GRVALRVSYR-NQVAEFEVEDSGIGIPAADHRRIF 845 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F +G A + G+GLGL I + + GG+ + S EG L + V N Sbjct: 846 EPFERGERAGTYSTAGIGLGLTITKLLTEIMGGEISLTSTPGEGSSFKVKLMLSEVTNPS 905 >gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 691 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 7/254 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 I E + + E ++RAEE KS L+++SHE+RTPL ++GF+EV+E E Sbjct: 424 LRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVIGFAEVLEEEL--- 480 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E ++E I SG+ LL +N +LDL+RIEAG + L+ D VR+ + + Q Sbjct: 481 --DEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFDAADEVRQSVRIFQR 538 Query: 342 RAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 +K + + + + V+ D G ++++NL+SNAVKFT G + V + G Sbjct: 539 MIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDE-GMIRVGLAA-EGDWL 596 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G GI +P + F Q + + G GLGL I ++ GG+ ++S+ Sbjct: 597 RLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSE 656 Query: 462 LREGVEVIAILPNT 475 +G LP Sbjct: 657 KGKGTTFTVWLPLR 670 >gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] Length = 880 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 8/236 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R+ EE AK +F ++SHELRTPL I E I + + + R+ Sbjct: 362 RRMEEEATNAKLQFFTNISHELRTPLTLIADPVEHIID---DENLTRQQRTMLQIVRRNV 418 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 L L+ EILD +I+ G+ L+ S +L D +++ I + A++K I + + + Sbjct: 419 NILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALELECSDDI 478 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + AD + ++ NLLSNAVKFT GGR+ + T G I + D G GIA+ E+ Sbjct: 479 -RMRADIYKVERICYNLLSNAVKFTQEGGRITLKAA-TDGDKVSICVTDTGMGIAKDELS 536 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F Q + G G+GL I +S H G ++ S+ +G LP Sbjct: 537 RIFERFYQVKDSY---GGGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVTLPL 589 >gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863] gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] Length = 1129 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 158/376 (42%), Gaps = 10/376 (2%) Query: 118 GLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G W L+ + + +LIA+ + +S+ L F++ + + + Sbjct: 332 GQTWALVVQLPEKEAFARIHQLEKLFVIAMLIAIVLVFISSHYLSN--FITSPLLKLTWA 389 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + + + + + +S + ++ AELE L Sbjct: 390 AERVSAGDLDENMINTERKDEIGRLAISFERMQRSIRDKIQLIKTQN---AELEKNLQLI 446 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + + K FLA+ SHELRTPL+ ++G +E + GPL + + + I Sbjct: 447 QKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPS-NQRYQLDIII 505 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +SGQ L L++++LD ++ G ++ +SA++L R + + K + I ++ Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 ++ V AD + + QV+ NL+ NA+K+T G++ ++ + + D G GI Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISANVV-DDKVRVQVVDTGQGIPAE 623 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 624 QLEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLA 683 Query: 476 RVLNFIPEDNHESTQY 491 + ++ + Sbjct: 684 SADEISATEVMQNQHH 699 >gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 641 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 137/269 (50%), Gaps = 11/269 (4%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + + +++ A + K FLA+MSHELRTPLN I+G + +++ + E Sbjct: 245 TLQKQYEEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQTEL----EE 300 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 K+ + + S Q LL ++N+ILDLS+I+AG++ LS+ +++ I++ I +++ +A E Sbjct: 301 AQKQMVKLLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSIELMRTKANE 360 Query: 346 KNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI- 403 K +++ +IDP L + D + Q+++NL+SNA+KFT G V + V S G YI Sbjct: 361 KLLDLNLEIDPRLPKYIETDPLRLNQILMNLISNAIKFTEK-GYVSLRVNQLSHEGDYIT 419 Query: 404 ---SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +KD G GI + S+ Q G GLGL I + ++ G+ S Sbjct: 420 VKFEVKDTGIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVELQNGKIDFNS 479 Query: 461 KLREGVEVIAILPNTRVLN-FIPEDNHES 488 + +G L + N P +N E Sbjct: 480 EYGKGSNFWFELTFRAINNYSTPAENIEE 508 >gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 403 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 1/229 (0%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N +S F++ +SHELRTPLN++ GF E++ MG LN+E + Y+G Q L+++ Sbjct: 162 ANQVRSNFVSMVSHELRTPLNSVHGFIELLWQGHMGELNDE-QRLYLGYAQEGVQQLISI 220 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 + +IL ++R + G++E + + L+++VR LQ +A + + + +I P ++ D Sbjct: 221 VEDILFMTRSDLGQFETKQQGVQLLELVRLVTQSLQPQAVKAGVALVLEIVPETPLLYVD 280 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + ++QV+ NL+SNA+K+T GG V +T R Q IS+ D G GI + P + F Sbjct: 281 PQRIKQVLNNLISNAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRPHIFERF 340 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + + +S G GLGL IA+ I+ HGG + + +G LP Sbjct: 341 YQSNHSQQSKMGGYGLGLSIARLIVEQHGGTISFDTVVGKGSSFYFTLP 389 >gi|288918897|ref|ZP_06413241.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288349749|gb|EFC83982.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 1412 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 31/350 (8%) Query: 145 LLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYIT 204 +L + +++ + F + + + + IM+ + LA +T Sbjct: 787 VLGVIELASFTPFSDLHLTLVDQLVDTIGVVLNTIMANARTEELLAQSQ--------RLT 838 Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR----KRAEE---ENLAKSRFLASMS 257 L +V++ E ++ A LE + D R ++AE+ + KS FLA+MS Sbjct: 839 QELRSQSVELQRTNNELEEKAALLEEKNTEIDMARIGLEEKAEQLALSSQYKSEFLANMS 898 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELRTPLN++L ++++ L+ + ++ IH +G LL LIN+ILDLS++EAG Sbjct: 899 HELRTPLNSLLILAKLLADNPDHNLS-QKQIDFAETIHSAGSELLGLINDILDLSKVEAG 957 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLL 376 + + + + + A+EK + + + DE+ ++QV+ NLL Sbjct: 958 KMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISVTSDVPEEFVTDEQRIQQVLKNLL 1017 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQY-------------ISIKDNGPGIAEGEIPTVLTS 423 SNAVKFT G V + V S + ++ D G G+A ++ + + Sbjct: 1018 SNAVKFTDS-GTVRLDVSVASPDTPFVAPSLRSAPMVLSFAVSDTGIGVAAEKLRMIFEA 1076 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F Q G GLGL I++ I GG + S++ +G +P Sbjct: 1077 FQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVP 1126 >gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|312110692|ref|YP_003989008.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215793|gb|ADP74397.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 468 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 154/325 (47%), Gaps = 7/325 (2%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 +I + + + L+ + + + L + L + YH+ Sbjct: 147 GAIYLYIPLASIQELTKEVAMIWLPLAALFVFVLLIAGKRLVRHITGPLKEMEEVAYHMS 206 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + N + D++ ++AK+ + + AEE ++ K FLA++SHELRTP++ + Sbjct: 207 QGNYEAQIPVRTNDEI---GKLAKAFNIMAKAVAEE-DMRKREFLANVSHELRTPISYVK 262 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G+SE I + E ++++ I+R + L+ ++LDL+++E L + + Sbjct: 263 GYSEAILQGLV--KTKEEQRKHVQLIYREAGRMERLVRDLLDLAQLEGNSVPLQKVPLVF 320 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 ++ + + + Q+K I + ++D + + D + QV+ NLL NAV++T G+ Sbjct: 321 AQVIEDTVAKYEPFLQKKQITLAVELDHDII-LEGDADRLEQVVQNLLDNAVRYTPDAGK 379 Query: 389 VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 + + + S + + I+D+G G+ + ++ + F + A E G GLGL I + I Sbjct: 380 IDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQRFFRVDQARSRKEGGTGLGLAIVKQI 439 Query: 449 MANHGGQFLIRSKLREGVEVIAILP 473 ++ H G S+ +G++V+ LP Sbjct: 440 ISLHDGTISFFSEEGKGMKVVIELP 464 >gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 611 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 114/239 (47%), Gaps = 4/239 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ +L + F+A++SHELRTPL + + E + ++E ++ + ++ Sbjct: 372 EKIDLERREFVANVSHELRTPLTTMRSYLEALADGAW--QDDEIAPRFLDVTQTETERMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y ++++ ++ + I + ++ + ++ + + V Sbjct: 430 RLVNDLLQLSKMDSRDYNFYKNSVDFVEFFNKIIERFE-MSKSQKVDFVRSMPNQEVFVS 488 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-WTSGRGQYISIKDNGPGIAEGEIPTVL 421 D + QV+ N++SNA+K++ GG + TV + +SI D G GI + ++ + Sbjct: 489 IDTDKITQVLDNIISNAMKYSPEGGTITFTVDIEEAANQILVSISDQGVGIPKSDLNKIF 548 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A G GLGL IA+ ++ H G S +G + LP + Sbjct: 549 ERFYRVDKARTRMLGGTGLGLAIAKEMIQAHDGDIWASSVEGKGTTIYFTLPISEEEQE 607 >gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70] gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 970 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 96/471 (20%), Positives = 176/471 (37%), Gaps = 31/471 (6%) Query: 21 DHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITL 80 D L +I + L + +L+ + W+L+ Sbjct: 254 DRLFASATI-PQLGWVVIQTLPKDLVHSPVNRLVVQVLIFSFLILI------AAWTLLAA 306 Query: 81 AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 V L LG + D + + + G IG + Sbjct: 307 VVARLLLPLGLAASSIDAMVDNRAAFTPLPIAGNDEIGQLVQAFNRLLLSRDEQRQRLFL 366 Query: 141 KSATLLIALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSM----------HVLD 186 ++ + I + +S + + P A + + S +L Sbjct: 367 ATSGVGIGIWDYDMSAGTMTWDEQMFALYGATPGEEADAQRIWESRVHPDDLESVNQLLH 426 Query: 187 ISLAGMLATALSFFTYITY---HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 +L G + F + K+N +L + + + + +S++ R Sbjct: 427 SALQGESFFSAEFRIVLPDGNIRWIKANAVVLRADGDGGEPLRVIGTNWDISEQKRVEL- 485 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 KS+F++++SHELRTPL +I G +I +G L + ++ + +++ Q L Sbjct: 486 ----MKSQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPS-QARQLVDIAYKNSQRLGY 540 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN++LD+ +I AG+ L+ IV + + + ++ N+ V Sbjct: 541 LINDLLDMEKIAAGKMRFDMILQELMPIVEQAMEANEAYGRQFNVTFALVERDDSMLVRV 600 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + + QV+ NLLSNA KF+A RV + V + ++D GPGI+ + T Sbjct: 601 DAQRLMQVLSNLLSNAAKFSASAERVEIAV-MAQNNQVRVEVRDQGPGISPELQARLFTK 659 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q + + G GLGL IA+ ++ GG + S++ G LP Sbjct: 660 FTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHSEVGRGSVFFFELPA 710 >gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sonnei Ss046] gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185] gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088] gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088] gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185] gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB and RcsD [Escherichia coli W] gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B] gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010] gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G] gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357] gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli KO11] gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120] gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167] gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 576 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAHAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VIEGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565 >gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. W3110] gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K12 substr. W3110] Length = 807 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 775 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 10/238 (4%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++AE E+ AKS FLA MSHE+RTP+N +LG + ++ + + +E + I SG Sbjct: 361 EKAEAESRAKSDFLAVMSHEIRTPMNGVLGLASMLLETRL----DPEQREAVATIRESGD 416 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +L ++N+ILDLS++EAGR+ + +V +++ A+ K + + ++DP+L Sbjct: 417 NLQRILNDILDLSKLEAGRFAFEAIDFAPHALVETVATVVRASAKSKGLTVKVELDPNLP 476 Query: 360 -SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAE 414 ++ D +RQV+LNL SNAVKFT G V ++ ++KD+G GIA Sbjct: 477 PTLRGDVARIRQVLLNLASNAVKFTDE-GEVTISATCQTRRDLLATVEWTVKDSGIGIAP 535 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + + F Q +I G GLGL I++ I+ GG + S EG L Sbjct: 536 EKLGLLFSDFAQADASISRRFGGTGLGLAISRRIIEQMGGTIGVTSTPGEGSTFRFTL 593 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 6/192 (3%) Query: 36 EIITLHVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPMWSLITLAVYAANLSLGK 91 I ++++ R+ P+ +L I +W L A + + + Sbjct: 45 RIRAKQIDAVTRLIPVTMAVTMLNVAIVLILFWGRGWNDFLAIWGLTLAATASLAVRSWR 104 Query: 92 KVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSI 151 + + + R +L + W L L P I + + +S Sbjct: 105 RSYRNPPQEASPRAARH-MLRQAFFLAAIWGTLPLALFSHIEPTSQLILACLMVGM-MSG 162 Query: 152 SALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSN 211 A + P A + + V + ++ + AG L F Sbjct: 163 GAFTLSTFPRAGLVYLATMTVGCAGALLLCGAGPYLVTAGFLLLFAFFMARNIVSQGNLF 222 Query: 212 VKILSCQAEKDD 223 + L Q E + Sbjct: 223 LGNLKAQLELER 234 >gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 875 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 9/261 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 E ++ + E AE+ N+AKS FL+ MSHE+RTPLNAI+G + + P Sbjct: 337 TEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAIIGMTTIAAAVVRDP---A 393 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 ++ + I S +HLL LIN++LD+S+IE+ L + + +I+ + + + + Sbjct: 394 RVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDMFEIINGFVSTVYAQTKA 453 Query: 346 KNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG----R 399 K IE + ++ + D + Q++ NL SNAVKFT GG++ + V G Sbjct: 454 KGIEFQETMEGFGEDAIFIGDSLRLNQILFNLSSNAVKFTPPGGKIRLEVSRYRGRNTAD 513 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++ D G G+ + + V F Q +I G GLG+ I ++++ GG + Sbjct: 514 MIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGMSITRNLITLMGGCIRVD 573 Query: 460 SKLREGVEVIAILPNTRVLNF 480 S+ G I LP + Sbjct: 574 SEPGVGTACIVELPFLKGEES 594 >gi|254444308|ref|ZP_05057784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258616|gb|EDY82924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 612 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 84/294 (28%), Positives = 134/294 (45%), Gaps = 12/294 (4%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 L + K+ ++ L + A AK RFLA+MSHE+R Sbjct: 174 RTRELLNELENKVARRTSQLTKANKSLNSLNAELQVAVDEARAAERAKGRFLATMSHEIR 233 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 T LN I+G S ++ + P ++ KE+ G I +SG L+ +IN+ILD S+ E+G+ EL Sbjct: 234 TTLNGIIGASHMLNHSSSLPESD---KEFAGIIQKSGDALMIIINDILDYSKYESGQLEL 290 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 ++ SL D+ +EC ++ NI + + DP L V D +RQV+LNLL+NA Sbjct: 291 EQTPFSLKDLAKECTNLMDTSLANHNITLEVEFDPKLPQLVVGDPARIRQVVLNLLNNAF 350 Query: 381 KFTAIGG-RVHVTVGWTSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 KF G + + I I+D G G+ + + ++F Q + G Sbjct: 351 KFGRDGTVTLAIKAESVKNDSVVLRIEIRDQGIGMTPDTLERLFSAFMQADSSTTREYGG 410 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 GLGL I + + + + S+L EG IL +PE++ + Sbjct: 411 TGLGLAICKLLADAMAARIDVSSELGEGSVFAFILELA-----LPEEDAKPADI 459 >gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 575 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 7/288 (2%) Query: 194 ATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFL 253 A L F + K S +E + E + + + ++RAE A F+ Sbjct: 158 AIQLIFTASPNTMWRDTIEKQFSLISEMINAAFERKYLFDKTLKEKRRAENSERATRDFV 217 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 A ++HELRTPLN +LG +E++E + N + + IH+SGQ L +IN++LD S+ Sbjct: 218 AMINHELRTPLNGLLGSAELMEDTQITDYQN----KLLETIHQSGQMLRIIINDLLDFSK 273 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVI 372 + AG EL + +V+ + + EK + I +L + D ++Q++ Sbjct: 274 MSAGMLELKVANFKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLPQSLMGDIDRVQQIL 333 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NL+ NA KFT G + + VGW I + D G GI + + + F Q + + Sbjct: 334 VNLVGNAFKFT-KSGHISLKVGWQENALVLI-VSDTGCGIPQDKQKLLFEPFTQVDNSSQ 391 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +G GLGL I + ++ G+ +S+L EG E LP V Sbjct: 392 RQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKLPLEVVSEQ 439 >gi|118474424|ref|YP_892424.1| sensor histidine kinase/response regulator [Campylobacter fetus subsp. fetus 82-40] gi|118413650|gb|ABK82070.1| sensor histidine kinase/response regulator [Campylobacter fetus subsp. fetus 82-40] Length = 1016 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 10/253 (3%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 + A L ++ A + N +KS FLA++SHE+RTPLN I+GF+++++ + + Sbjct: 364 DMIAKALELITTQKQAAIDANRSKSAFLANISHEIRTPLNGIIGFTDLLKNSNL----KK 419 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 KE +G I +S ++LL +IN ILD+S+IE+ + EL S I + + +A E Sbjct: 420 QEKELVGVIEQSSENLLRIINNILDISKIESRKVELDNEVFSPIKEFSSAVELYSQKAYE 479 Query: 346 KNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---- 400 K+IE IDPSL + D ++QV++NL+ NA+KFT G++ V + Sbjct: 480 KDIEFICYIDPSLNKHLEGDYFKVKQVLINLIGNAIKFTPQNGQIIVDITKLDENEDGKT 539 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+KDNG GI + + + SF Q + I G GLGL I+ + ++ Sbjct: 540 TIKFSVKDNGIGIDKNMLEKIFDSFIQANKDITKIYGGTGLGLSISNEYIKMMDSIIKVK 599 Query: 460 SKLREGVEVIAIL 472 S+L EG E ++ Sbjct: 600 SELGEGSEFSFVI 612 >gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 1068 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 12/258 (4%) Query: 229 EVAKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + + K A+ + N K FLA +SHEL+TPL A+LG S ++ + +G L NE Sbjct: 351 EQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL-NER 409 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 Y G IH+SG+HL++++N+ILDL+R+E G+ EL+ S + + ++ ++ + + Sbjct: 410 QARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVEARSVHNQT 469 Query: 347 N--------IEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 E I+P L + ADE +RQ++++LL NA KFT G+V + V Sbjct: 470 GRKGESLPSHEFSLSIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNRWE- 528 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GI + + + F Q + +G GLGL + +++ HGG Sbjct: 529 GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGDVSF 588 Query: 459 RSKLREGVEVIAILPNTR 476 S+ +G + +LP + Sbjct: 589 LSREGKGSQFTLLLPPSP 606 >gi|157827614|ref|YP_001496678.1| histidine kinase sensor protein [Rickettsia bellii OSU 85-389] gi|157802918|gb|ABV79641.1| Histidine kinase sensor protein [Rickettsia bellii OSU 85-389] Length = 498 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 146/253 (57%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E V + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 242 ARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-- 299 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E + YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L +V +I+++ Sbjct: 300 --DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVK 357 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + +E+ K + AD K ++QV LNLLSNAVKFT GG V +T+ + Sbjct: 358 PRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAK 417 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 418 LVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 477 Query: 460 SKLREGVEVIAIL 472 SK+ EG +I Sbjct: 478 SKINEGTTIILTF 490 >gi|91205043|ref|YP_537398.1| histidine kinase sensor protein [Rickettsia bellii RML369-C] gi|91068587|gb|ABE04309.1| Histidine kinase sensor protein [Rickettsia bellii RML369-C] Length = 498 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 146/253 (57%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E V + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 242 ARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-- 299 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E + YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L +V +I+++ Sbjct: 300 --DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVK 357 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + +E+ K + AD K ++QV LNLLSNAVKFT GG V +T+ + Sbjct: 358 PRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAK 417 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 418 LVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQ 477 Query: 460 SKLREGVEVIAIL 472 SK+ EG +I Sbjct: 478 SKINEGTTIILTF 490 >gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400] Length = 484 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 14/272 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRT 262 I+ ++ K + D + +E+A +++ RK E K ++++SHE+ T Sbjct: 225 ISSRWYQCIDKAIRW---TDGRMVRMEIAIDITE--RKEME---RMKDEMISAVSHEMHT 276 Query: 263 PLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELS 322 PL A++GF+E + ++ + K Y+ I+R + L LI L L R++A + Sbjct: 277 PLTAMMGFTEFLLEN---EVDRDLQKNYLKTIYRETERLNELITNFLQLQRLKASMVKFR 333 Query: 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF 382 + +++ +V + + + A K I + P L V +E+ + Q I NL+SNA+K+ Sbjct: 334 ITPVAVGLLVADVVSLYA--AASKKHRIVVECPPDLPPVRGNEEQLYQAISNLVSNAIKY 391 Query: 383 TAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 + GG V + + + ++D G GI+ + F + + + G GLGL Sbjct: 392 SPDGGDVTIGASAAAD-IVTLWVRDQGIGISPEFQEKIFERFFRVDNSDRRKVGGAGLGL 450 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + I+A HGG+ + S +G LP Sbjct: 451 TLVREIVATHGGRSWVESSPGKGSTFFISLPA 482 >gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU045] Length = 239 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 ++ + F+A++SHEL+TP+ +I GF+E + + ++ ++ I + + Sbjct: 11 LQKLENLRREFVANVSHELKTPITSIKGFAETLIEGA--KNDEQSLDMFLNIILKESNRI 68 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 +L+ ++LDLS IE + EL + ++L ++ I LQ +A K I+I +I+ + + Sbjct: 69 ESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-I 126 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 A E + QVI NLLSNA+ +++ +V V V + Y+ I+D G GI+E + + Sbjct: 127 EAHENKIAQVITNLLSNAINYSSEDNKVIVRVYR-NDNKVYLEIQDYGIGISETDQKRIF 185 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ H G+ ++S +G + Sbjct: 186 ERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVLF 236 >gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 791 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 3/233 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + K F++++SHELRTPL ++ +I + E K+ + + + L++ Sbjct: 557 ALDKMKDEFISTVSHELRTPLTSMRASLGLIASGALASR-PEKQKQMLEIAIGNTERLVS 615 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N+IL+L RI +G+ EL + S D+ R +L A + I+ + +VW Sbjct: 616 LVNDILELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEI--EARGVNVWG 673 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q I NLLSNA+KF+ GG++ + SG I + D+G GI ++ ++ Sbjct: 674 DPDRILQTITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFER 733 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q + A G GLGL I +SI++ HGG SK G LP Sbjct: 734 FQQVDASDSRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLPTKP 786 >gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 933 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|298376092|ref|ZP_06986048.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298267129|gb|EFI08786.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 638 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + +L + + F + ++ + + QA+K L+ Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIILVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405 IE +K + +++D++ + Q + N+L NA+KFT+ G + + + + + + + Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYPADAQDVRLYV 573 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 629 Query: 466 VEVIAIL 472 + + Sbjct: 630 CRISLVF 636 >gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA 21] gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA 21] Length = 857 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 16/299 (5%) Query: 203 ITYHLFKSNVKILSCQAEKDDLIAELE------VAKSLSDETRKRAEEENLAKSRFLASM 256 + +++ N+ + + + +I + + A+ S R+ AEE ++ FLA M Sbjct: 428 VDGRVYRWNLSPIMVEGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKM 487 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN +LG S++++ + N+ +E++ + SG+HLL ++N+ILD SR+E Sbjct: 488 SHELRTPLNGVLGVSQLLKRTPL----NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQ 543 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNL 375 G++ + ++ L ++V + + EK +E+ + + + V +D+ + Q++ NL Sbjct: 544 GKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNL 603 Query: 376 LSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 L+NA+KFT G + V + G I + D G GI E ++ + F Q Sbjct: 604 LNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTT 662 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL-NFIPEDNHESTQ 490 G GLGL I S++ GQ + S+ G LP V P+ + Sbjct: 663 REYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPD 721 >gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1080 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 142/342 (41%), Gaps = 13/342 (3%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 +++ L L++ + L +V ++ + ++ + + + G Sbjct: 155 FQQAVWRYTLLAGILAVGLML---LVRSVLIAPLGRLGGVARRVTSEENFALRAPKGADD 211 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L + + ++ L E+ + R+RAE E+ A + FLA Sbjct: 212 EIGELVDSFNAMLERIEQRNRLLGEQRRRLEMEVSERTAEFVGARERAERESKAMADFLA 271 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +++HE+RTP+ I+G ++ + +E++ + S LL++IN +LD SRI Sbjct: 272 AITHEVRTPMTGIIGLLDISLRGQL----EPRLREHLEIVRSSSHALLDVINGVLDFSRI 327 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EAG+ + +L + V + + + + E+++ + + L V D +RQV++ Sbjct: 328 EAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQVLV 387 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 N++ NA KFT G + V + +++D G GI + F Q Sbjct: 388 NIVGNAFKFTEQ-GEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQADA 446 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ G GLGL IA+ ++ GG + S G Sbjct: 447 SVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFT 488 >gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia sp. 4_1_40B] gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular synthesis regulator component C gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1] gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520] gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482] gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|316941685|gb|ADU75719.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 387 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 23/347 (6%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + + +L + V + + I H + SL GML F ++ Sbjct: 7 IGVCTRIVIYSVLAHLVIAGVGFISFM--CKLIDETHADNCSLLGMLMAQNIFVLFLEIL 64 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS--LSDETRKRAEEENLA---------------- 248 + + + ++ +K I+ A L + ++ EE+N Sbjct: 65 IVVAIMSVIVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIKSSS 124 Query: 249 -KSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS F +MSHEL+TPL+ ILG ++I + + + ++ I ++ LL LIN Sbjct: 125 QKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLRLIN 184 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ILD+SRI++G + + +++ +V + + ++K + + D Sbjct: 185 NILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAVDVD 244 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + ++ILNLLSNAVKFT GG++ V V I +KD G GI + + + Q Sbjct: 245 KIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFERYRQ 303 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +G G+GL I +S +A H G +RSK +G E I LP Sbjct: 304 VKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 350 >gi|256004073|ref|ZP_05429058.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281419091|ref|ZP_06250108.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|255991996|gb|EEU02093.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281407240|gb|EFB37501.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 430 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 23/347 (6%) Query: 147 IALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYH 206 I + + +L + V + + I H + SL GML F ++ Sbjct: 50 IGVCTRIVIYSVLAHLVIAGVGFISFM--CKLIDETHADNCSLLGMLMAQNIFVLFLEIL 107 Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKS--LSDETRKRAEEENLA---------------- 248 + + + ++ +K I+ A L + ++ EE+N Sbjct: 108 IVVAIMSVIVYANKKLRKISSEHTADIDNLKKQFQRELEEKNELIRNLTSLYEKTIKSSS 167 Query: 249 -KSRFLASMSHELRTPLNAILGFSEVIELE-TMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS F +MSHEL+TPL+ ILG ++I + + + ++ I ++ LL LIN Sbjct: 168 QKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRRKSTRHLITIKQNCYRLLRLIN 227 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ILD+SRI++G + + +++ +V + + ++K + + D Sbjct: 228 NILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQKGLTLEFDTLEEEIITAVDVD 287 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 + ++ILNLLSNAVKFT GG++ V V I +KD G GI + + + Q Sbjct: 288 KIERIILNLLSNAVKFTNPGGKITVKVA-KKFNKVIIKVKDTGIGIPKNMQAAIFERYRQ 346 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +G G+GL I +S +A H G +RSK +G E I LP Sbjct: 347 VKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGSEFIISLP 393 >gi|153811917|ref|ZP_01964585.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174] gi|149832051|gb|EDM87136.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174] Length = 674 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 8/247 (3%) Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + +AE N AKS FL +MSH++RTP+NAI+G++E+ E Y+ I Sbjct: 287 AKLKAECANKAKSSFLFNMSHDIRTPMNAIIGYAELASRHL---QETEKLGRYLEKIQIC 343 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ LL+++ +LDL+RIE + E+ + ++ + CIIM Q +A+ KN + Sbjct: 344 GKELLSMLGNVLDLARIENNKVEMEYTVSNVHECFENCIIMFQQQAESKNQTLSLTEQIM 403 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV-----TVGWTSGRGQYISIKDNGPGI 412 V+ D + +V LN++SNA+K+T GG + + I+I DNG G+ Sbjct: 404 YPYVYMDAPHLSEVCLNIISNAIKYTNTGGAISCNVVQKSCEKEDWCNMIITITDNGIGM 463 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 +E + F + S G G+G+ I + ++ G + SK EG + Sbjct: 464 SEEFQKRIFEIFERERNTTLSHIDGSGIGMGITKKLVELMDGTIEVESKQGEGSTFTVTI 523 Query: 473 PNTRVLN 479 P + Sbjct: 524 PCRKASE 530 >gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A] gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A] Length = 589 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F+A++SHELRTP++ + G++E I + + ++ + + + L L Sbjct: 358 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 415 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +NE+L+++R++A + + + ++ + +++++E + + + D Sbjct: 416 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYD 475 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QV+ NL+ NA ++T G + +++ ++I D G GIA + V F Sbjct: 476 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 534 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + A K +QG GLGL I + I+ HGG+ + S+L +G I LP ++ ++ Sbjct: 535 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 589 >gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus epidermidis ATCC 12228] gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135] gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis M23864:W2(grey)] gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus epidermidis ATCC 12228] gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135] gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis M23864:W2(grey)] gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144] gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045] gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028] Length = 588 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F+A++SHELRTP++ + G++E I + + ++ + + + L L Sbjct: 357 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 414 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +NE+L+++R++A + + + ++ + +++++E + + + D Sbjct: 415 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYD 474 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QV+ NL+ NA ++T G + +++ ++I D G GIA + V F Sbjct: 475 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 533 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + A K +QG GLGL I + I+ HGG+ + S+L +G I LP ++ ++ Sbjct: 534 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 588 >gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 590 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 10/245 (4%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTPL+ + G++E + + + + +E IH + Sbjct: 350 RLDRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMRRELTEIIHDETLRMKR 407 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-EKNIEIFQKIDPSLSSVW 362 L+N++L+L+++E+G+++L + + L ++R Q A E ++ I V Sbjct: 408 LVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVD 467 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV NLL NA + TA G + + Y+ + D G GI E ++P + Sbjct: 468 GDEDRLEQVFTNLLDNAFRHTAT-GTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F + A + G GLGL IA+ ++ H G+ L+ S+L EG +LP P Sbjct: 526 RFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLPLA-----SP 580 Query: 483 EDNHE 487 D+ E Sbjct: 581 NDDGE 585 >gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 698 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 7/229 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS+FLA M+HE+R+P+NA+LG ++++ + + +G S + L +I Sbjct: 331 NRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHAQL----EPQQQTLLGHATHSARLLQTII 386 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS-LSSVWAD 364 +++LD S+IE+ E + + + I LQ RA K I + +D + + D Sbjct: 387 DDVLDFSKIESHTLEFHCETLHPTQLCQSLIEPLQARASSKGIILRWLVDEAVPPQLQGD 446 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + QVI NLL NAVKFT+ G V + +GW R +S+ D G GI+ + + F Sbjct: 447 PVRLSQVISNLLGNAVKFTSQ-GSVSLQLGWRHER-LRVSVTDTGIGISAEDQALLFEPF 504 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q + G GLGL I++ ++ GG+ ++S +G LP Sbjct: 505 SQVDSSATRRFSGTGLGLAISKRLVELMGGEIRLQSAPGQGSCFWFELP 553 >gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio vulnificus CMCP6] gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus CMCP6] Length = 1129 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 158/376 (42%), Gaps = 10/376 (2%) Query: 118 GLCWTLLTLVEPGTWTPEYLTI--YKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G W L+ + + +LIA+ + +S+ L F++ + + + Sbjct: 332 GQTWALVVQLPEKEAFARIHQLEKLFVIAMLIAIVLVFISSHYLSN--FITSPLLKLTWA 389 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + + + + + +S + ++ AELE L Sbjct: 390 AERVSAGDLDENMINTERKDEIGRLAISFERMQRSIRDKIQLIKTQN---AELEKNLQLI 446 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + + + K FLA+ SHELRTPL+ ++G +E + GPL + + + I Sbjct: 447 QKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPS-NQRYQLDIII 505 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +SGQ L L++++LD ++ G ++ +SA++L R + + K + I ++ Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 ++ V AD + + QV+ NL+ NA+K+T G++ ++ + + D G GI Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTE-GKIVISANVV-DDKVRVQVVDTGQGIPAE 623 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 ++ + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 624 QLEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLA 683 Query: 476 RVLNFIPEDNHESTQY 491 + ++ + Sbjct: 684 SADEISATEVMQNQHH 699 >gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354] gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|254293600|ref|YP_003059623.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042131|gb|ACT58926.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 474 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 107/458 (23%), Positives = 190/458 (41%), Gaps = 40/458 (8%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMN---SDIKIGEVYVWRIWLLVG 113 L + + + S + A E+ VW + +++G Sbjct: 29 LCTGVLFALWISGTSLLI-SSGVFLIAALPAFAQILTARLGGDASHELEMAVWIVVVMIG 87 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVA 173 A+G G +P + + +++ + +AV ++A Sbjct: 88 ATAMG-----------GATSPISIAFFIPVVTALSIGRKRQAIEASAFAVLGFCLAALLA 136 Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHL---FKSNVKILSCQAE-KDDLIAELE 229 + +LD + +L + + + SN ++ + + D + Sbjct: 137 RMDFLPIPKELLDPAPGIFALVSLIYMASLVRKISLAHNSNGMLVRIREQANDHIARLSR 196 Query: 230 VAKSLSDETRKRAEEENLA--------------------KSRFLASMSHELRTPLNAILG 269 + LSD K E N A ++ F A SHELR+ LNAILG Sbjct: 197 QKEILSDRVNKADERANQAALSLSQEKEASFELKEKLAQRTLFFAKTSHELRSSLNAILG 256 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 FSEV++ G L++ YKEY IH G+ L +++ILDLS+I+AG+Y++S +SL Sbjct: 257 FSEVMKEGVFGELSD-KYKEYAQMIHEGGKSLQMTVDDILDLSKIDAGQYKISPVQVSLT 315 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ + + + +A+ +I++ +AD + +R + NL+SNA+KFT GG V Sbjct: 316 ELMWDMVKFMSDQARRSDIKLSVSSLDRDVEAYADPRAVRHIAQNLVSNAIKFTPHGGAV 375 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 ++V G ++S++D GPG+ E +L F Q + S + G GLGL + Sbjct: 376 AISVREDEDGGSWMSVRDTGPGMDPAEFEKILKPFIQTDESSTSGKHGTGLGLSVVNGFA 435 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 HGG + S+ EG + P + + E Sbjct: 436 QLHGGHIQLDSQAGEGSIISVYFPKKPTPSKAEVKDSE 473 >gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227] Length = 933 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 889 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 5/291 (1%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 + + + + Y E+ E E R AE Sbjct: 447 IPVHFEILYELWDMWLEVHAYPSEDGLGIFFRNITERKQAEQEREYLLMREQIARGEAER 506 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N K FLA +SHELRTPLN ILG++ +++ + T + I I R+ + + L Sbjct: 507 ANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNL---EEATRRRGIETIERNAKLQIQL 563 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 I ++LD+SRI+ G+ L+ +++L+ + E + ++L + K+I I + ++ V D Sbjct: 564 IEDLLDVSRIQQGKLSLNIQSVNLVHTIEEALETVRLAIEAKSIHIKTALGVNVGMVAGD 623 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++Q+I NLL+NA+KFT G++ V + I I+DNG GI+ +P V F Sbjct: 624 AARLQQIIWNLLANAIKFTPPAGQIQVVLERV-NNSAQIQIQDNGKGISSEFLPYVFEYF 682 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPN 474 Q I G+GLGL I + + HGG S G LP Sbjct: 683 RQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGAIFTVNLPL 733 >gi|86145971|ref|ZP_01064298.1| signal transduction histidine kinase [Vibrio sp. MED222] gi|85836176|gb|EAQ54307.1| signal transduction histidine kinase [Vibrio sp. MED222] Length = 574 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 137/286 (47%), Gaps = 8/286 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L A + + RK AE N AKS FLA MSHELRTPL Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVAARKDAERANKAKSEFLAMMSHELRTPL 225 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA +G + ++ + N+ + + ++ S + LL +I+++LD S+IE+G + L+ Sbjct: 226 NATIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + D V + + A +K + + D P + D + Q++ NL+ NA+KFT Sbjct: 282 WSNARDTVTFVLSEQKKIADDKGLSLTLTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VHV++ + IS++D G GI+ ++ ++ + F Q I G GLGL Sbjct: 342 -EHGHVHVSITYQHSSF-RISVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHES 488 I + ++ G+ + S+ +G + LP TRV N + Sbjct: 400 ITKRLVELMRGRISVESEPGKGSKFEVRLPVLTRVTNNQDHAAEDK 445 >gi|70730077|ref|YP_259816.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344376|gb|AAY91982.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 751 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 161/374 (43%), Gaps = 15/374 (4%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYA---VFLSFFPVVVAL----S 175 L + T ++ S L + + L V F V A Sbjct: 135 LGAVYRRLYATGLASLLWMSVFLCGLAVALSGLFYRLVTRHLQVMADFARRVAAGELHEP 194 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + + L+ Q ++D+L ++ + Sbjct: 195 LHLDKRQRPDGDEIDTVARALDDMRRAVLDDVQRREADRLALQDKRDELQKMVQRRTASL 254 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + AE NLAKSRFLA+MSHELRTPLN ILG +E++ +G + ++ + +H Sbjct: 255 MHAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRSAPLGSQD----RQRLQALH 310 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 ++G+ LL+++NE+L +R+E G SL ++ E +LQ RA+ + ID Sbjct: 311 QAGEGLLSILNEVLSFARLEEGESRPEVRDFSLRQLLEEVTTLLQPRAEANRTRLELHID 370 Query: 356 PSL-SSVWADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYIS--IKDNGPG 411 L E+ +RQV+ NLL+NA++FT G RV V V ++ GQ + ++DNG G Sbjct: 371 EQLAPRQQGAEQYLRQVLSNLLANAIRFTEDGWVRVEVQVLHSAAEGQRLRCCVRDNGIG 430 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA + F Q S + G GLGL I + ++ G+ + S+L +G Sbjct: 431 IAASMREKIFERFVQASDEVSRRYGGTGLGLAICKHLLQQLDGRIGVDSELGQGSSFWFE 490 Query: 472 LPNTRVLNFIPEDN 485 L +P Sbjct: 491 LVLGVGQEPLPSPQ 504 >gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sp. D9] gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 1129 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 159/374 (42%), Gaps = 6/374 (1%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 GL W L+ + + K + + ++I + + F++ + + + + Sbjct: 332 GLTWALVVQLPEKEAFTRVHQLEKLFVIAMLVAIILVVIASHYLSNFITSPLLKLTWAAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + + +S + + +++ LE L + Sbjct: 392 RVSAGDLDESTFNTKRKDEIGRLAISFERMQRSIREKIQTIKQQN---EALESNIKLIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 449 QNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGANGGI-PASQKYQLDIIIKS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLELSSHLLGNKTIRIINQVPAD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K T+ G++ ++ + + + D G GI + Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKHTSE-GKIVISANIIDEQ-VRVQVVDTGQGIPAEYL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLYVSSQPMVGTTFSFTLPLASE 685 Query: 478 LNFIPEDNHESTQY 491 ++ + ++ Sbjct: 686 EEIKAAESLTAREH 699 >gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 991 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 15/328 (4%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 A ++S F L + AL T + ++ + L Sbjct: 246 ADAVSGPVPFSLMDENASGTAAISSALLTDRDQVSIPENADPQLVIQLQRDALMNL---L 302 Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 +NV + L + A+ ++ N AKS+FLA+MSHE+RTPLN + Sbjct: 303 HDANVARNALLDANKKLEDAIRNARKMAAHADAA----NDAKSQFLANMSHEIRTPLNGV 358 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G ++++ + +++ I SG++LL L+N+ILD S+IEA + E+ Sbjct: 359 IGMTDLLLESALDT----EQRKFAQTISSSGRNLLRLVNDILDFSKIEANKLEIEYLDFD 414 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIG 386 L+D++ E I + A EKN+++ D ++ + D ++Q+++NL+SNA+KFTA G Sbjct: 415 LLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAARLQQILVNLVSNALKFTAEG 474 Query: 387 GRV-HVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 V V + S ++ D G GI I V F Q ++ G GLGL Sbjct: 475 EVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPFTQADGSMIRKYGGTGLGLS 534 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I+ + + ++S G Sbjct: 535 ISNQLARKMNSEIHVQSSPENGSTFCFS 562 >gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 419 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL + L D R+ A + KS F+A+MSHE+RTPLNAI+GFS ++ + Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMA----TATSE 222 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I + + LL L+N+I DLS+I+AG S D++RE + +R Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLN 282 Query: 345 EKNIE-IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E + + + + ++++ + QV+ NLL NA+KFT G + Y Sbjct: 283 ENPLVALVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGTDEVYF 341 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI + E + + F + QG GLGL ++Q+I+ N GG+F + S++ Sbjct: 342 YVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNFGGRFGVESEVG 397 Query: 464 EGVEVIAILPN 474 +G ILP Sbjct: 398 KGSTFWFILPL 408 >gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii CDC 3083-94] gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii CDC 3083-94] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SMS-3-5] gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli SMS-3-5] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] Length = 1040 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 97/445 (21%), Positives = 175/445 (39%), Gaps = 16/445 (3%) Query: 54 LFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVG 113 L + + P W+ +L+ L++ S + + +L Sbjct: 449 ALRLRWSEPSSIAGSTETLPSWAWFSLSAGLVLLAISLLWSQSLRQQIQRRRRMEAVLHE 508 Query: 114 QIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA--LSNFMLPYAVF-LSFFPV 170 Q+A + + +A AL + + L P+ Sbjct: 509 QLAFQTSILDAIPQPIYLRDIDLRLMTCNAAFERALGCGRKQMRGRTIDQMPLKLGDVPL 568 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + + + + M+ L + ++ D+ E + Sbjct: 569 SMQTYRKVLATGEAATLDRTLMIEGKERIVLNWVEPLRNATGGVVGIIGGWIDM-TERQQ 627 Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 + + RAE N AKS FLAS+SHE+RTP+NAILG E+ + P ++ Sbjct: 628 MVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDKRLPDDDRLQ--- 684 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + S + L+ LI++ILD S++EAG++ L+ L ++ + + L A K +++ Sbjct: 685 VETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSLFGLAASRKGVQL 744 Query: 351 FQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGRGQYISI 405 +D ++ D +QV+ NL+SNAV+FT G V + +G T + S+ Sbjct: 745 EAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDR-GSVVIRLGATNLTPDCQSLTFSV 803 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 D G GI E + + F Q K + G GLGL I Q ++ G I S++ +G Sbjct: 804 SDTGTGIPEDGLKKLFQPFTQIGD-TKRSAGGTGLGLSICQRLVTKMHGTIGITSEVGKG 862 Query: 466 VEV--IAILPNTRVLNFIPEDNHES 488 V LP + + + ++ Sbjct: 863 TTVTATIELPIAAEIAPVLQSEQQN 887 >gi|322700316|gb|EFY92072.1| putative histidine kinase HHK1p [Metarhizium acridum CQMa 102] Length = 2549 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 30/284 (10%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEEN-LAKSR-------------FLASMSHELRTPL 264 AE +++ + A + + E +A+ AK FLA++SHELRTPL Sbjct: 1921 AENRGMVSVQKRALAKALEAETKAKHAEAEAKRNVKLAEEAAKAKAIFLANVSHELRTPL 1980 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 N ++G SE++ + N E I S LL +IN+ILD S++EA + +L Sbjct: 1981 NGVIGNSELLRDSDL----NREQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYII 2036 Query: 325 AISLIDIVRECIIML----QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 A + ++VRE + + + + +KN++I Q I+ ++ D + QV+ NL+ N++ Sbjct: 2037 AFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRLHQVLGNLIGNSL 2096 Query: 381 KFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 KFT G V + + ++D G GI ++ + F Q + Sbjct: 2097 KFT-EDGSVTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPFSQADASTARKYG 2155 Query: 437 GVGLGLPIAQSIMA-NHGGQFLIRSKLREGVE--VIAILPNTRV 477 G GLGL I +S++ G+ + S+ EG + Sbjct: 2156 GSGLGLSICKSLIEIMMKGKIQLESEESEGTTAWFTVTFEKAKA 2199 >gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15] gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15] Length = 1733 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 20/249 (8%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 1115 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSIL----NAEQLEHVNIIKSSTDSLLNLIND 1170 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + L ++ E + A +K +E+ +D + V D+ Sbjct: 1171 ILDLSKVEAGMIKLSMEWLHLPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPSMVKGDKF 1230 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGW----------TSGRGQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT+ G + V + + D G G E E Sbjct: 1231 RIRQVLLNVVGNAIKFTSS-GEIFVRCKVQSPERSGPLGDNETVVRFEVIDTGRGFTEQE 1289 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472 + F Q + G GLGL I+ + HGG+ RS +G L Sbjct: 1290 AKFLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGKMDARSVPNKGSTFFFTIKFGL 1349 Query: 473 PNTRVLNFI 481 P Sbjct: 1350 PTEEDHPPP 1358 >gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492] gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492] gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 446 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + + +AE + KS FLA+MSHE+RTPLN+I+GF+ +I + Sbjct: 204 IDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIAE----LDDR 259 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E +EY+ + + + LL LI++ILDL++IEAG + + + + D ++ + ++ + Sbjct: 260 EERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNYDIK-E 318 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QV+ N ++NA+KFT+ G++ + G Sbjct: 319 DKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSE-GQILLEYHPVEGTGQIEF 377 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 S+ D G GIA + TV F + + +G GLGL I +SI+ + GG S+L Sbjct: 378 SVTDTGMGIAPDAVATVFDRFVKL----NTFAKGTGLGLSICKSIIEHLGGTIGTESELG 433 Query: 464 EGVEVIAILPNTR 476 G P Sbjct: 434 VGSRFWFRHPCAE 446 >gi|239993253|ref|ZP_04713777.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonas macleodii ATCC 27126] Length = 938 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 38/363 (10%) Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK 209 + + +++ V +V ++ + A A + + ++ Sbjct: 462 AFGTFTGYVVAKMVGAPIRRLVRYIAE---FDPTQKEGVKAPQRALHIQELSSLSDEFVS 518 Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE------------------ENLAKSR 251 ++L E + E + E+ N+AK++ Sbjct: 519 LEARLLDAFEELKVAREVEQSLNVELGELNQSLEKRIEEKTEHLALALKEAEAANVAKTQ 578 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+N I+G E++ + E I RS +LL +++ ILD Sbjct: 579 FLANMSHEIRTPMNGIIGSCELMLENEL----PENVSARAKTISRSASNLLIILDSILDW 634 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IE+G+ + ++ +++ + + AQ K +I I+ + ++ D + Q Sbjct: 635 SKIESGKMLTDIQSCAIRELLEASCDLYRHAAQVKGYDIALYINQGVPNALNIDAGKVSQ 694 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 +I NLLSNA+KFT+ G V V V + + +G IS+ D G GIA ++ + F Q + Sbjct: 695 IINNLLSNAIKFTSD-GVVTVNVSY-AHQGLKISVSDTGIGIAPNKLRLIFDKFEQADPS 752 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT----------RVLNF 480 G GLGL I++ ++ GG+ + S+L +G +P T V+ Sbjct: 753 TTRNFGGTGLGLAISKGLVELLGGELYVESELGKGTSFTFHIPATVSEEKEHAENEVIPS 812 Query: 481 IPE 483 +P+ Sbjct: 813 LPD 815 >gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii Sb227] gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83] gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74] Length = 949 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587] gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587] Length = 834 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 377 LFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 436 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 437 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 492 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 493 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 552 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 553 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 611 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 612 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 671 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP V P+ + Sbjct: 672 GTRFEIQLPIELV--ERPDAPQQ 692 >gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 562 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ +I GF+E + + +T E++ I + + L+ ++ Sbjct: 342 RREFVANVSHELKTPITSIKGFAETLLDGA--KNDEQTLNEFLKIISKESDRIETLVFDL 399 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS +E + E+ +SL +I I +Q A+EK I I +I P + + A++ + Sbjct: 400 LDLSHVEQ-QTEIVTEYVSLSEIAESTIKNMQNIAEEKQITIVNEIKPDIV-IDANKDKV 457 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV LNLLSNAV ++ V V V + + + ++D G GI+ + + F + Sbjct: 458 SQVALNLLSNAVSYSKASSEVIVRV-YKDANKRIMEVQDFGIGISAEDQQHIFERFYRVD 516 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + IM H G+ + S+ EG Sbjct: 517 KARSRDSGGTGLGLSITKHIMEAHNGRINVFSRPNEGSTFRVTF 560 >gi|291613055|ref|YP_003523212.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583167|gb|ADE10825.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 725 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 19/303 (6%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASM 256 L K +AE +E++ A ++ E N AK FLA+M Sbjct: 153 VEQLGKIEAHAERMEAEVMRRASEVKDANRALKIAMQKLEQRETELAAANRAKDSFLATM 212 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHE+RTPL +LG E++ + + + + SG+ LL ++++ILD S+IE Sbjct: 213 SHEIRTPLTGMLGMLELLSMTQLDM----EQRMTLDTAWDSGRGLLRIVSDILDWSKIEE 268 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA-DEKGMRQVILNL 375 G+ ELS S+ +++E + A K + + +++DP +S+ D + QV+ N Sbjct: 269 GKLELSLRPTSIPQLLQEVVNTYSRVASAKTLILCRRVDPRISAAHIVDPLRLSQVLNNF 328 Query: 376 LSNAVKFTAIGGRVHVTV----GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 +SNA+KFT G + ++ SG S+KD G GIA+ + + Q S Sbjct: 329 VSNAIKFT-QYGEIELSAELIERLDSGERIRFSVKDTGIGIAKEVQKHLFQRYRQESADT 387 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IAILPNTRVLNFIPEDNHEST 489 G GLGL I + + GQ ++S+ G LP + V I + H Sbjct: 388 ARMYGGTGLGLAICRRLTEMMDGQIGLKSEPGLGSIFSITLTLPVSGVPGEIVQSIHPEV 447 Query: 490 QYK 492 +++ Sbjct: 448 KHR 450 >gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 726 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 R R E + K F+ +SHELRTPL +ILG++E++ L+ E+ +E++ + Sbjct: 473 RTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ--DLDYESQREFLQTVSNEA 530 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 + L ++ ++LD+SR+EAG +L+ A+ L ++ E LQL Q + ++ L Sbjct: 531 ERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEEL--TLQLHTQLIHHKLLIDARTPL 588 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----------SGRGQYISIKDN 408 V+AD ++Q+I NLLSNA+K++ G + +TV G+ I ++D Sbjct: 589 PPVFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDE 648 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F + + + GVGLGL I++ ++ HGG+ ++S G Sbjct: 649 GIGIKPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSF 708 Query: 469 IAILP 473 LP Sbjct: 709 SFTLP 713 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 153/352 (43%), Gaps = 6/352 (1%) Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 W L+ + + K + + +I + + ++ + + + + Sbjct: 318 WALVVELPEKEAFARITELEKIFGVAMISAIILVIFASHLLSNSITAPLLRLTWAAEKAS 377 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + + + + + +S + + ++D ELE + + + Sbjct: 378 GGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQND---ELEQSLKIIKQKNN 434 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + K FLA+ SHELRTPL+ ++G +E + GP+ ++ + + I SGQ Sbjct: 435 ELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPV-KDSQRRQLEMIINSGQR 493 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L NL++++LD ++ G ++ AI L VR + + K + I +I +L Sbjct: 494 LTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPANLPL 553 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V ADE+ + QV+ NL+ NA+K+T+ G++ ++ + + + D G GI ++ + Sbjct: 554 VDADEQRLEQVLYNLVGNAIKYTSE-GKIIISATVLEQQ-LRVQVVDTGQGIPSEQLEHI 611 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + + QG GLGL I++ ++ GG+ + S+ G L Sbjct: 612 FEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 663 >gi|327383867|gb|AEA55343.1| Two-component sensor histidine kinase [Lactobacillus casei LC2W] gi|327387048|gb|AEA58522.1| Two-component sensor histidine kinase [Lactobacillus casei BD-II] Length = 636 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + ++ ++ +I Sbjct: 377 DRNRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + A + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|229154966|ref|ZP_04283080.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342] gi|228628524|gb|EEK85237.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342] Length = 466 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation [Sphingobacterium spiritivorum ATCC 33300] gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation [Sphingobacterium spiritivorum ATCC 33300] Length = 343 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 161/347 (46%), Gaps = 17/347 (4%) Query: 140 YKSATLLIALSIS---ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 +K L+ A ++ ++ +F + + +F ++L ++ + + + + T Sbjct: 3 FKLLVLINAAAVGLSISIVSFYYQHDIKAAFIIFGISLIVSFVVFYFLFEKYIYRRINTI 62 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR----- 251 + L K L + DD I + E + D +++ E + +S+ Sbjct: 63 YKLIHNL--KLGKDLKDALG-EYVSDDPITDAER--EVRDWAKEKKSEIDKLRSQEKFRR 117 Query: 252 -FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FL+++SHE +TPL AI G+ E ++ + + E K ++ ++ L LI+++ + Sbjct: 118 EFLSNISHEFKTPLFAIQGYIETLQDG-LIEEDPEMAKGFLDKASKNLDRLSYLIHDLDE 176 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMR 369 +S++E+GR L+ L ++++E I L +A+ + I+I K +++ V AD K ++ Sbjct: 177 ISKLESGRISLNIEKFDLSELIKETIENLDDKAKSQKIDIVFKQKYQNVTFVKADRKKIQ 236 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 QV+ NL+ N++K+ GG + + + + + D+G GI E +P V F + Sbjct: 237 QVLTNLIDNSIKYGKTGGSTDIRIFPLFEQ-VLVEVTDDGQGIEEKNLPRVFERFYRTDK 295 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + G GLGL I + I+ H +RS G L ++ Sbjct: 296 SRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEKSK 342 >gi|309781490|ref|ZP_07676226.1| composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia sp. 5_7_47FAA] gi|308919903|gb|EFP65564.1| composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 638 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79 GL + ++ D L I VL + ++ + P W LI Sbjct: 39 KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 98 Query: 80 LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L + A G + + + + W + V G+ W + + + E+ Sbjct: 99 LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 158 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195 ++ ++I ++ +A+ + + L ++A + L G+L Sbjct: 159 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 216 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + T ++ + V+ + + E L A+ DE ++RA + KSRFLA+ Sbjct: 217 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 269 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 SH+LR P++AI+ E + +E+ + + + L +LDLS++E Sbjct: 270 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 325 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 + + + + L +++ E + A+ K + + +I P A+ +R+ + NL Sbjct: 326 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLTARIPPLPVYGMAEPVLLRRALFNL 385 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L NA+++T GG V + V + I + D G GIA + +++ Q + Sbjct: 386 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 442 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 QG+GLGL I + + G F +RS G L P + K Sbjct: 443 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 500 >gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1139 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 10/260 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 I+E + ++ +++AE N KSRFLA+MSHE+R+PLNAILG E++ Sbjct: 485 LFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLH 544 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N+ + + +G LLN IN+ILD S+IEAG+ L + +V + + Sbjct: 545 SKL----NKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFEPDKLVAQVL 600 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +L+ +A +K +++ +D ++ + D + + QVI NL+ NA+KF+ G + V + Sbjct: 601 QILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVS-GTITVEMWI 659 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + + D+G GI+E + F Q + +G GLGL I + ++ Sbjct: 660 ADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITM 719 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG+ + S+L +G Sbjct: 720 MGGEIELESELDKGCCFTFY 739 >gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 1166 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 10/239 (4%) Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + R AE AKS+FLA+MSHE+RTPL AI+G+ E + + + + + Sbjct: 549 ELARNSAE----AKSQFLANMSHEIRTPLAAIIGYGETLLDPDL---SEPEKRSSAETVV 601 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 RSG+HLL+L+N+ILD S+I+A + ++ +++L +++ E RA+EK ++ + Sbjct: 602 RSGRHLLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICE 661 Query: 356 PSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKDNGPGIA 413 L V D +RQ+I+NL NA+KFT G + + V + + + D G G+ Sbjct: 662 YPLPEQVRTDPTRLRQIIINLCGNALKFTDK-GSISLVVRCDRDQELLVARVVDTGIGMK 720 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 ++ + F QGS AI G GLGL I++ + GG + S EG E + Sbjct: 721 PEQLGRLFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNSTYGEGSEFELSI 779 >gi|255014410|ref|ZP_05286536.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 602 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + ++ + + F + ++ + + QA+K L+ Sbjct: 308 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 366 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 367 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 419 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 420 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 478 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISI 405 IE +K + +++D++ + Q + N+L NA+KFT+ G + + +++ + + + Sbjct: 479 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSAEAQDVRLYV 537 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 538 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 593 Query: 466 VEVIAIL 472 + + Sbjct: 594 CRISLVF 600 >gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1195 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 97/431 (22%), Positives = 172/431 (39%), Gaps = 31/431 (7%) Query: 88 SLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147 + + + IG+ R L++ + + + + I + Sbjct: 301 AAARSFAEGETLIGQAAAARRTLVLRDVPADYVQVVSATGKSAPKNLLVMPIENDGQVNG 360 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM------LATALSFFT 201 + + + + F+ + +A + L +LA L Sbjct: 361 VVELGFIRELGVRDQEFMELIAKSMGDFVEAALYRERLQDALAETQQLNEELQVQQEELR 420 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE-TRK-------------------- 240 L + ++ Q + AELE +E ++ Sbjct: 421 VSNEGLEERGRALMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAA 480 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R E+ + KS FLA+MSHELRTPLN+ L +++++ G L E + Y IH S Sbjct: 481 RLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR-YAETIHASNSD 539 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS- 359 LL LIN+ILDLS++EAG+ + +S+ ++ + A +++ + P Sbjct: 540 LLVLINDILDLSKVEAGQVTVELETVSIDATLQALEETFKPLAGARHLSLAFDRLPGTPD 599 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + D + + Q++ NLLSNAVKFT G V ++V G ++D+G GIA ++ Sbjct: 600 TFITDGQRVTQILRNLLSNAVKFTER-GEVALSVAPAEGGMLRFDVRDSGIGIAADKLDM 658 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN-TRVL 478 + +F Q + G GLGL I++ GG+ + S++ +G LP Sbjct: 659 IFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPLDAEAA 718 Query: 479 NFIPEDNHEST 489 +D H +T Sbjct: 719 LNASQDAHHAT 729 >gi|317486464|ref|ZP_07945289.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316922267|gb|EFV43528.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 907 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 14/334 (4%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 L+ L + + A F P +A H L ++ + + + Sbjct: 291 LVRLRSETVVHPDDVEAYRAFFKPERLAWENGTPGLSHELKYR--VLMGNGQARWHCLRA 348 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 +LF ++L A+ + E E K+ AE+ N AKS FL+ MSH++RTP+N Sbjct: 349 YLFDPVRRMLLFCAKD---VEEEERQKATLRMALVAAEQANHAKSEFLSRMSHDIRTPMN 405 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI+G + + + P E E + +I S + LL+LIN++LD+++IE+G+ L+ Sbjct: 406 AIIGMAAIAGMNVGNP---ERLSECLNNIALSSRFLLSLINDVLDVAKIESGKMSLASEP 462 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTA 384 ++V A K I P L ++ D ++QV++NLLSNA+KF Sbjct: 463 FDFDELVSSVSSFTYGSAVAKGIIFNLFASPLLEKIYVGDPLRIKQVLMNLLSNALKFAP 522 Query: 385 IGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GR+ + I DNG G+++ + F Q + + G GL Sbjct: 523 EKGRIEFNITPVQKVGHRELVRFVISDNGIGMSKSFQERMFQPFEQ-EMTDQRGLSGSGL 581 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 GL I +S + G + S+ +G +P Sbjct: 582 GLAIVRSFVQLMDGTIRVESEQGKGSSFSVDIPL 615 >gi|226322433|ref|ZP_03797951.1| hypothetical protein COPCOM_00204 [Coprococcus comes ATCC 27758] gi|225209155|gb|EEG91509.1| hypothetical protein COPCOM_00204 [Coprococcus comes ATCC 27758] Length = 438 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 139/310 (44%), Gaps = 7/310 (2%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V + +T ++ +++ I + + + N L E D Sbjct: 134 VLRVSRGMDTVWNTAFMILPYMIAIGVMMGCVAWFMTRHQVKRLIAPINNLDLEEPLEND 193 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + + + + +++A + F A++SHEL+TPL +I G++E++ G + Sbjct: 194 VYEELHPLLERIDRQNKEKA-AIEQMRREFSANVSHELKTPLTSISGYAEIMMN---GLV 249 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 +E + + I++ ++ L+ +I+ LS+++ G EL + + L + RE + L L+ Sbjct: 250 KSEDMQGFSERIYKEASRMITLVGDIIKLSKLDEGSVELEKENVDLYQMTREIVSRLALQ 309 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A+++ I++ + + + + ++I N+ NA+K+ G+V++ VG T + Sbjct: 310 AEKRRIQVEVVGE--HVECFGIRQILDEMIYNICENAIKYNKENGKVNIWVGNTLNGKKV 367 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I ++D G GI + + F + + G GLGL I + H + + S+ Sbjct: 368 I-VQDTGIGIPKEHQDRIFERFYRVDKSHSRETGGTGLGLSIVKHGALLHNAEIHVESEE 426 Query: 463 REGVEVIAIL 472 +G ++ I Sbjct: 427 GKGTKMELIF 436 >gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium etli GR56] Length = 332 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 96/276 (34%), Positives = 151/276 (54%), Gaps = 1/276 (0%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 + + + L+ + ++ + ++ + AE N AKSRFLA++ Sbjct: 9 QFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAV 68 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLNAILGFS+++ E G N+ +EY+G + SG HLL+++N +LD+S+IEA Sbjct: 69 SHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEA 128 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 GRYEL A + VR C ML L+A+ K + + +I L + AD++ ++Q+++NL+ Sbjct: 129 GRYELILEAFDISASVRSCESMLALQAKSKGVTLTSRIQRGLGEIVADQRAIQQILINLV 188 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NAVKFT GG V V +++ D G GIA ++ + F Q + Sbjct: 189 GNAVKFTEAGGVVSVDAAAR-DGILKLTVSDTGIGIAADKLAMLGQPFVQIQNDYTRRFE 247 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G GLGL + + ++A HGG F I S+ EG + + Sbjct: 248 GTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 283 >gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 646 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 7/259 (2%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +++ AE + L R AE N K F+A +SH+LR+PLNAILG+S+++ Sbjct: 394 SDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQ 453 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + T+ + I R+ Q L+ ++LD+SRI G+ +L + L I+ I Sbjct: 454 L---DESTFTRALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCLVELPAIIGVAIET 510 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A+ K+I + ID S+ + D + QV+ NLLSNA+KFT G++ V + +T Sbjct: 511 AYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT-D 569 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +I++ D G GI +P V + Q + + G+GLGL IA+ ++ HGG + Sbjct: 570 SEAHITVIDTGIGIKSEFLPYVFERYRQADC--QHKQHGLGLGLAIARYLIELHGGAIHV 627 Query: 459 RS-KLREGVEVIAILPNTR 476 S +G LP + Sbjct: 628 NSLGEGQGTTFTIKLPLHQ 646 >gi|282898666|ref|ZP_06306654.1| Histidine kinase, HAMP region protein [Cylindrospermopsis raciborskii CS-505] gi|281196534|gb|EFA71443.1| Histidine kinase, HAMP region protein [Cylindrospermopsis raciborskii CS-505] Length = 644 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 154/344 (44%), Gaps = 21/344 (6%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + L+++++ + +L +++AL+ + + ++ + LA +LA + Sbjct: 298 WVILAVASVRDALL---GLDQIKLILIALTVGLVGASLLVSLYLAPLLADPVEGLRDYAL 354 Query: 206 HLFKSNVKI-----------LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 ++ + D ++ L+ + K A+ N KS+FLA Sbjct: 355 NIHSHHAVQPIPRNFRIKEFNQLAQALDQMVERLKAWTEELEMAWKEAKSANTVKSQFLA 414 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 + SHELR PLN I+ ++ + E E++ + HLL +IN++LD+S+I Sbjct: 415 NTSHELRNPLNIIINCVRLVRDGLCD--DKEEELEFLKKADDTAIHLLGIINDLLDISKI 472 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 EAG+ + + L ++ E I + + Q+K +++ +I + + D ++QV++N Sbjct: 473 EAGKLSVVMIPLELRQLLLEVINLQSVNVQKKGLQLKCEISEQVIPIKGDRIKLKQVLIN 532 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGR---GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 ++ NA KFT G + ++ IS+ D G GI + + F Sbjct: 533 VIGNATKFTEE-GSITISTKVIKQHSKLYVVISVVDTGIGIDPQQQQKLFRPFVMVDGTT 591 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPN 474 +G GLGL I+++++ GG+ + S L G V ILP Sbjct: 592 TRKFEGTGLGLAISRNLIELMGGKITLESLGLNRGTTVKIILPL 635 >gi|254444049|ref|ZP_05057525.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258357|gb|EDY82665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1318 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 27/381 (7%) Query: 110 LLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP 169 + V L + L P+ + S ++ L Sbjct: 660 IRVSAEVNQLQMSGPPLFVFELSGPKSMVSEPGKESTFEFSGLQSGDYTLTARAIDEAGE 719 Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + + + A T + ++ F+ IL+ + L +E Sbjct: 720 LAAPAEVRFRVLPLFYQTKQAYAFYTLSALGLFLLIGRFR----ILALRRSNAKLARLVE 775 Query: 230 VAKSLSDETRKRAEEENLA--------------KSRFLASMSHELRTPLNAILGFSEVIE 275 + S+ +E ++ N KS FLA MSHE+RTPLN ++G V+ Sbjct: 776 ESTSVLNEKNEKLVLVNRELKEMAEHAEQAAAAKSSFLAVMSHEIRTPLNGVIGMCSVLR 835 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + + ++Y+ I SG LL ++N+ILD S+IE GR L L+D+V Sbjct: 836 QTNLDSM----QRDYLESIRVSGLSLLEVVNDILDYSKIEKGRLSLECILFDLVDLVESV 891 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + +L L+A EK +++ IDP + + + D +RQ++ NLL NA+KFT G V V++ Sbjct: 892 VSLLGLKANEKELDLHLLIDPRIKRLHYGDPTRVRQILYNLLGNAIKFT-KLGSVTVSLY 950 Query: 395 WTSG---RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 SG + + D G GI E + V +F Q ++ G GLGL I + + Sbjct: 951 PKSGYDSDHLVMEVSDTGVGIEEDKHEAVFEAFAQSDVSDVRKFGGTGLGLSICRQLAGL 1010 Query: 452 HGGQFLIRSKLREGVEVIAIL 472 GG + S+L EG L Sbjct: 1011 MGGDIELESRLDEGSTFRVSL 1031 >gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1548 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 28/335 (8%) Query: 169 PVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 P + ++ ++ L + F+ + ++ + E L Sbjct: 1092 PPLRGWLAAPLVGRDGHNLGLIQLSDKYEGEFSEADETILVQLAQMAAVAIENTRLYQAE 1151 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + A++ ++ T N K FLA +SHELR+PLN ILG+S++++ P + T + Sbjct: 1152 QEARAAAERT-------NRIKDEFLAILSHELRSPLNPILGWSQLLQNR---PFDAATTQ 1201 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 + + I R+ + + LI+++LD++RI G+ + S + L+ ++ I ++ A K+I Sbjct: 1202 QALTTIERNARLQIQLIDDLLDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSI 1261 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------- 398 + + V D ++Q++ NLLSNA+KFT GGRV V +G G Sbjct: 1262 HLELDLAQIGP-VCGDATRLQQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPS 1320 Query: 399 -RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +++ D G GI+ +P + SF Q + G+GLGL I +S++ HGG Sbjct: 1321 PHFAKLTVTDTGKGISPDFLPHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIW 1380 Query: 458 IRSK-LREGVEVIAILPN-----TRVLNFIPEDNH 486 S +G P + L P + Sbjct: 1381 ADSAGEGQGATFTVCFPLLTPTPAQELPSPPPEQE 1415 >gi|162420651|ref|YP_001608241.1| two-component sensor/regulator [Yersinia pestis Angola] gi|165926708|ref|ZP_02222540.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. F1991016] gi|167402481|ref|ZP_02307936.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418881|ref|ZP_02310634.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|162353466|gb|ABX87414.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis Angola] gi|165921331|gb|EDR38555.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. F1991016] gi|166962875|gb|EDR58896.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048131|gb|EDR59539.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 891 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G W L + + E L + L++ + + P+ ++ Sbjct: 223 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 282 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 ++ L L + + + L+ Q + ++ +++ Sbjct: 283 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 336 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E ++ AE+ N KS L ++SHE+RTPLN LG E+++ + H Sbjct: 337 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 392 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + LL +IN +LD SRIE+G+ LS +L+ ++ + ++ + +A K++ + I Sbjct: 393 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 452 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ + D +RQ+++NLL NAVKFT GR+ + V + +++D G GI Sbjct: 453 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 510 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 T+ F Q EQG GLGL IA ++ GG + S+ +G LP Sbjct: 511 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 566 Query: 475 TRVLNFIP 482 + +P Sbjct: 567 NAITPPMP 574 >gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM 17393] gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM 17393] Length = 507 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 116/244 (47%), Gaps = 10/244 (4%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 E +++AEE N KS FLA+MSHE+RTPLNAI+GFS ++ E KEY+ Sbjct: 270 ELLEAKEKAEESNKLKSAFLANMSHEIRTPLNAIVGFSSILSEYI----QEEDAKEYVHI 325 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I + Q LL LIN+ILD+SRIEAG E E + + + E + +L+ IEI Sbjct: 326 IEENNQLLLQLINDILDISRIEAGILEFIEENMDVNASLYEIKAIAELKVS-PKIEIHLL 384 Query: 354 IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIA 413 + ++QVI N +SNA+K T G + + ++D G GI Sbjct: 385 PGLETCVIHTVPHRVKQVINNYVSNAIKHTEA-GHIDIGYYTPQEGYIRFFVRDTGTGIP 443 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + S +QG GLGL I I G+ + S L +G E +P Sbjct: 444 TENQKHIFERFVKLD----SFKQGTGLGLSICTIIAEKMNGKLGVNSTLGKGSEFWFEIP 499 Query: 474 NTRV 477 V Sbjct: 500 YVPV 503 >gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 877 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 8/237 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++AE EN AKS FLA MSHE+RTP+N +LG + + + + + + I SG Sbjct: 362 EQAEAENRAKSDFLAMMSHEIRTPMNGVLGLANSLLETKL----DPEQQHAVTTIRDSGD 417 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 +LL ++N+ILDLS++EAGR E + S +V +++ A+ K + + +DP L Sbjct: 418 NLLRILNDILDLSKLEAGRIEFEQVNFSPSVLVDAVRSIVEPNARAKGLTLKIDVDPRLP 477 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEG 415 + D + +RQV+LNL NAVKFT GG + +T I + D G GI Sbjct: 478 PALTGDAQRIRQVLLNLAFNAVKFTDRGGVTIVLTCVRRDDAYATIEWQVTDTGIGIPLD 537 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + ++ T F QG ++I G GLGL I++ I+ GG + SK EG L Sbjct: 538 RVGSLFTDFAQGDVSINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGSTFRFSL 594 Score = 60.3 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 57/209 (27%), Gaps = 10/209 (4%) Query: 23 LGLEYPSKMDFDREIITL----HVESLFRVSPILPLFVLLVANIGTWFTQNP----IFPM 74 G + + D + L + S+ R+ P+ ++ A + + Sbjct: 29 RGAGTLTPANVDEREMRLIRAAQIHSVSRLVPVTMSINMINATLVLVAFWDNNSRFFLLA 88 Query: 75 WSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTP 134 W A + K + + + +GL W + +V P Sbjct: 89 WFGSIGIAAALAMRSWLK-TRHNPPREASANAIRRMSAQALMLGLIWGAMPIVLFPNAEP 147 Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 I + +S A + +P A + +V+ + ++ L Sbjct: 148 TDQLI-IGCLVTGMMSGGAFALSTVPRAGLAYTWSMVLGSAITLMLCTGTGYQITMIFLM 206 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDD 223 F + + L Q E + Sbjct: 207 LYAVFMSRNLVSHGEMFFDNLCAQFELER 235 >gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 543 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + +++AE + KS FLA+MSHE+RTPLNAI+GF+ ++ N Sbjct: 289 INHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVES----DNK 344 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + ++Y+ + + + LL LI++ILDLS+IEAG + + + + + I ++ + Sbjct: 345 KERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRNYDIK-E 403 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 +K + + D ++ D+K + QVI N ++NA+KFT G++ + + + Sbjct: 404 DKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNE-GQIVLEYHYKAESNEIEF 462 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA ++ V F + S +G GLGL I +SI+ + GG + S++ Sbjct: 463 AVTDTGMGIAPDKVNQVFDRFVKL----NSFSKGTGLGLSICRSIIEHLGGTIGVESEMG 518 Query: 464 EGVEVIAILPNT 475 G P Sbjct: 519 NGSRFWFTHPLR 530 >gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM 11079-80] gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM 11079-80] Length = 857 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE----- 229 + + + I+ A T + +++ N+ + + + +I + + Sbjct: 400 LFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTI 459 Query: 230 -VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 A+ S R+ AEE ++ FLA MSHELRTPLN +LG S++++ + N+ + Sbjct: 460 AEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQR 515 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 E++ + SG+HLL ++N+ILD SR+E G++ + ++ L ++V + + EK + Sbjct: 516 EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGL 575 Query: 349 EIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---GQYIS 404 E+ + + + V +D+ + Q++ NLL+NA+KFT G + V + G I Sbjct: 576 ELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQ-GSIRVELQLIEGDPLAQLVIQ 634 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E ++ + F Q G GLGL I S++ GQ + S+ Sbjct: 635 VVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGI 694 Query: 465 GVEVIAILPNTRVLNFIPEDNHE 487 G LP V P+ + Sbjct: 695 GTRFEIQLPIELV--ERPDAPQQ 715 >gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] Length = 635 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + + + + + ++ + ++ Sbjct: 399 EKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAW--QDKDLAPTFLNVTQTETERMI 456 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y S I+ + I ++ ++ I + + V Sbjct: 457 RLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVA 515 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + QV+ N++SNA+K++ GG + ++ + +SIKD G GI + + + Sbjct: 516 IDQDKITQVLDNIISNAIKYSPEGGTITFSIAQHT-HEIVVSIKDQGMGIPKSNLAKIFE 574 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ I+ H G+ S+ +G + LP Sbjct: 575 RFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLPIE 627 >gi|307729618|ref|YP_003906842.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307584153|gb|ADN57551.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 657 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 13/280 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +E++ + E E + R+ AEE N AK RFLA +SHELRTPL +L + V+ Sbjct: 259 DIHSEREAM-QERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVL- 316 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 M P + + + I R+ + LI+++LDL+R+ G+ LS + + +++ Sbjct: 317 --DMIPDLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + + Q K ++ + + V AD ++Q++ NL+ NA KFT GG ++V Sbjct: 375 LELFRSEIQVKQQDVHVYKEATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 IS++D G GI +I + +F QG + G+GLGL I +++ HGG Sbjct: 434 DERMHVQISVEDTGIGIEPDQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493 Query: 456 FLIRSKLRE--GVEVIAILPNTRVLNF-----IPEDNHES 488 +S G LP +P+ H S Sbjct: 494 VTAQS-PGAHCGATFTITLPTAAAPASTSQAVLPDPVHPS 532 >gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 615 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 2/229 (0%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E ++ F+A++SHE +TPL +I+ ++++ E +G LN++ ++ I I L Sbjct: 381 ELEKIRTDFIATISHEFKTPLTSIVMGTDILSDEGVGNLNDD-QRQIIKAIREDSDRLTK 439 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++L+L+RIE+G+ ++ DI+ + A++++ ++ K D + V A Sbjct: 440 LVNDLLELTRIESGKAIFKIKEYAIDDIIECAVKPFYQIAEQQDKTLYFKCDEDMPRVIA 499 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + + V+ NL+SNA+K+T G + V Y+++KD G GI E I + Sbjct: 500 DFEKITWVLNNLISNALKYTNAGDEISVIASVDKENTMYVTVKDTGLGIPEEYIDNIFEK 559 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F Q A +G GLGL + + I+ H G+ S+L G L Sbjct: 560 FVQVKDAD-FEVRGTGLGLAVVKEIIEAHHGRIWCESRLDVGSSFSFTL 607 >gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1937 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 167/374 (44%), Gaps = 19/374 (5%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ L ++ + + T I + ++ ++ M + + L +Q + Sbjct: 1112 AVIELASFSRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLAQSQLLTSELQSQQEEL 1171 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + A L + L ++N ++ + E+E + Sbjct: 1172 KKTNDRLETQAASLQQSEDLLKSQRERLQQTNEELEEKARLLEIQKKEVEGKNREVSIAK 1231 Query: 240 ----KRAEEEN---LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++AE+ + KS+FLA+MSHELRTPLN++L S+++ G L++ +E+ Sbjct: 1232 ISLEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENREGNLSD-KQREFAR 1290 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ +G LL+LIN+ILDLS+IE+G L + L D+ + A+E+ + Sbjct: 1291 TINAAGSDLLSLINDILDLSKIESGTVSLELGDVDLQDLAGHLDRSFRPLAEERQLAFTI 1350 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYIS 404 + P+L V D K ++QV+ NLLSNA KFT G V + +G + + Sbjct: 1351 DVAPALPRLVRTDSKRLQQVLRNLLSNAFKFTEK-GSVALKLGSAEGSPLRAGSQWMAFT 1409 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI E + + +F Q G GLGL I++ I GG+ ++ S+L + Sbjct: 1410 VTDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVLSSRLGQ 1469 Query: 465 GVEVIAILPNTRVL 478 G LP L Sbjct: 1470 GSTFTLFLPLEPPL 1483 >gi|47566186|ref|ZP_00237214.1| histidin [Bacillus cereus G9241] gi|47556739|gb|EAL15070.1| histidin [Bacillus cereus G9241] Length = 466 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +SIKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELSIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S G V L Sbjct: 444 ESAKGNGTTVSIKL 457 >gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] Length = 1786 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 31/375 (8%) Query: 129 PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFF---------PVVVALSTQAI 179 G+ P + + + + L++F AV + F + +++ Sbjct: 1111 HGSAAPTSIVVLPVVFEEKVIGVVELASFRPFSAVHMQFLEQLAESIGVSLNAIMASSRT 1170 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + V LA L L ++N + + D +E+ +E R Sbjct: 1171 EELLVESQRLAAELQDKQDEGERQQVELQQTNAALEEKARQLADQNQAIEIKNLEIEEAR 1230 Query: 240 K----RAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + RAE+ + KS FLA+MSHELRTPLN++L + ++ G L N EY Sbjct: 1231 RGLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLILARLLSDNVDGNL-NARQVEYSR 1289 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 IH +G LL LIN+ILDLS++EAG+ ++ + + + +V + EK+++ Sbjct: 1290 TIHGAGTDLLQLINDILDLSKVEAGKMDVHVTDVDVTSVVEYVEATFRPLTAEKDLDFIV 1349 Query: 353 KIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG------------WTSGR 399 +DP + + +D+ ++QV+ NLLSNAVKFT GG V + + + Sbjct: 1350 SVDPDVPRLLRSDQHRLQQVLRNLLSNAVKFTDSGG-VRLLIRNASGERFSTRSLQQADA 1408 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S+ D G GI ++ + +F Q I G GLGL I++ + GG+ ++ Sbjct: 1409 VLAFSVIDTGIGIPPEKLKVIFEAFQQADGTISRKFGGTGLGLSISREVAHLIGGEIQVK 1468 Query: 460 SKLREGVEVIAILPN 474 S+ G +P Sbjct: 1469 SEPGHGSSFTLYVPR 1483 >gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1142 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 109/477 (22%), Positives = 186/477 (38%), Gaps = 31/477 (6%) Query: 6 KNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTW 65 +N+ + PS + + +++L SL + + +L + T Sbjct: 261 RNERQVWIAETQTALGRAMSGNPSLRELSQRVLSLLCRSLDAQ---VGVQYVLESGGSTL 317 Query: 66 FTQNPIFPMWSLITL-----AVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC 120 + ++++ +DI + + Sbjct: 318 RLAGSYAAGADAPATIELGQGLVGQAALEARRIIVTDIPEDSIR--------------IQ 363 Query: 121 WTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM 180 W + + + A+ + A + F + VA + +A Sbjct: 364 WGAGAALPR---QLVIFPLIHDGVVRGAIELGAFARFTPRQLELVDIVAASVAQAIEAAQ 420 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-LSDETR 239 S ++ L + A + + L + +L E +A + Sbjct: 421 SRAKIEELLEE--SRAQGEELTAQQEELRQVNETLEERTHALELQRESLLATEVALRQKA 478 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E + KS FLA+MSHELRTPLN+ L ++++ L E K Y I +G Sbjct: 479 TELERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNLTAEQVK-YAQSITSAGN 537 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LL LI++ILDLS+IEAG+ +L I +I + + A E+ +E+ +DP Sbjct: 538 DLLALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELRIIVDPRCP 597 Query: 360 S-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 + AD + + Q++ NLLSNAVKFT GRV +TV R +++D G GIA + Sbjct: 598 ETIEADGQRLHQILSNLLSNAVKFTEA-GRVRLTVEPHDERRLAFTVQDTGIGIAADQHE 656 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +F Q + + G GLGL I++ A GG+ +RS EG +LP Sbjct: 657 VIFQAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSAPGEGSAFTLLLPLR 713 >gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] Length = 643 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 147/366 (40%), Gaps = 10/366 (2%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMS 181 T + G + + + + + ++P A + Sbjct: 227 AGATGLPGGHPARPGTLPADGSGVWPVAAPAQGESVLVPLDAAPFRDLPAGAWPEPPTHA 286 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + + + G L L ++ L A L A + A+S + R+ Sbjct: 287 LTLPLLRQGGTPYGFLVAGLNRYRVLDGAHRGFLELTA--GHLAAGIASARSYEAQQRRA 344 Query: 242 AE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 E E + AK+ F + +SHELRTPL I+G + + G + + + IHR+G Sbjct: 345 EELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRTQLAGA--DACVTDELDVIHRNGL 402 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N +LD SRIEAGR + + L + + + ++ ++ Sbjct: 403 RLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGLDFRVDCPQLPE 462 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V+ D +VILNLLSNA+KFT G + VTV +++ D G G+ E+P Sbjct: 463 PVYVDRGMWEKVILNLLSNALKFTFD-GSIRVTV-RAGDTHAVVTVADTGVGVPRQEMPR 520 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F + A + +G G+GL + + ++A HGG S EG LP Sbjct: 521 LFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFDVRLPFG--AA 578 Query: 480 FIPEDN 485 +P+D Sbjct: 579 HLPQDA 584 >gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL 200] gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL 200] Length = 588 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC 15579] gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC 15579] Length = 619 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 143/268 (53%), Gaps = 8/268 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKMQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVI---ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 +++ E + +N E +Y+ I ++ L+ LIN +LD +++++G +L+ Sbjct: 383 AVQLLGFYEKDINKDINYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNY 442 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 +++ ++ E + + A+ K I I + + D + ++ILNLLSN++KFT +G Sbjct: 443 NIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNLG 502 Query: 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 G + V + SG YI +KD G GI ++ ++ F Q +K ++G G+GL + + Sbjct: 503 GNIFVNI-IDSGDYVYIHVKDTGVGIPSDKLESIFQRFFQVDKTLKKNKEGTGIGLHLVK 561 Query: 447 SIMANHGGQFLIRSKLREGVEVIAILPN 474 S + H G I S+L +G E I LP Sbjct: 562 SFVEMHKGDVTIASELGKGTEFIIKLPA 589 >gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 512 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + F+A++SHELRTP+ +I GFSE + + + ++ IH + Sbjct: 284 RLEQIRKDFVANVSHELRTPITSIKGFSETLLDGAF--NDEQMLLSFLTIIHDESNRIQV 341 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++L+LS+IE + L L DI+ + + + + KN++ +I+ + + Sbjct: 342 LVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQD-AVILG 400 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q+ NL++NA+ ++ V + + + + +KD G GI + EI + Sbjct: 401 DVNRLMQIFTNLINNAIAYSKEETTVTLRISA-NDQYGIFEVKDEGIGIEKAEISRIFER 459 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL I + ++ H G+ +++S++ +G + LP Sbjct: 460 FYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLPLK 511 >gi|254442444|ref|ZP_05055920.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256752|gb|EDY81060.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 750 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 129/281 (45%), Gaps = 13/281 (4%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 L K L+ K +L + E K E ++ AE+ N AK FLA +SHE+RTPLN Sbjct: 335 LTKELADDLAYAFFKIELEQQKEQTKKELIEAKESAEKANRAKDEFLAVISHEIRTPLNP 394 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 ILG++ ++ +E Y+ I R+ + L+L++ IL SR++ G ++ + Sbjct: 395 ILGYTHLLRER----HQDEQDCLYLDSIRRAAKQQLSLVDHILCYSRLDRGSFKPQLTQF 450 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKID----PSLSSVWADEKGMRQVILNLLSNAVKF 382 +L+ + + + + + + P V +E +++ NLLSNA K+ Sbjct: 451 NLLQCCEDALEDTRNNTSKLDFTLINGQSQLAIPPSMIVEGEESMFLEILNNLLSNASKY 510 Query: 383 TAIGGRVHVTVG----WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 T G V + +G + S+KD G GI + + T F Q + +G+ Sbjct: 511 T-KSGSVTLEIGYRGVRADKAHFFFSVKDTGIGIEPELLKRLFTPFTQADTSYTRKYKGI 569 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 GLGL I + ++ G+ + S++ G E LP + + Sbjct: 570 GLGLAICKQLVDTLDGKIGVESEINVGSEFWFTLPMEIIAS 610 >gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 856 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 5/234 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + KS F++++SHELRTPL +I G++E++ + + + + Y+ IH Q L +L+ Sbjct: 613 DRMKSEFVSTVSHELRTPLASIFGYTELMLAKDL---PVDRQQRYLTTIHSETQRLTSLV 669 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ LD+ R+E+ + + + L ++++E + + P L + ADE Sbjct: 670 NDFLDVQRMESSQQQYQFVKLDLRNLIQEVAEFHAGSTSHHQLTLETGDRP-LRWIEADE 728 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 MRQ+ NL++NA+K++ GG + I I D G GI + +P + + F Sbjct: 729 PKMRQLFGNLINNAIKYSPDGGEIE-LKLEELEDRLRIQIIDEGIGIPQHALPELFSKFY 787 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + + G GLGL I Q I+ H G + S G LP ++ + Sbjct: 788 RVDNSDSRKIGGTGLGLAICQEIVRAHDGLIHVESTEGSGSIFTIELPFEQISS 841 >gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 670 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 12/265 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E + ++ + AE N AKS FLA+MSHELRTP+NAI+G S + + Sbjct: 258 ADITEHKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNAIIGLSYLALKTDLTT- 316 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 EYI I S LL ++N+ILDL+++EA + EL+ + +L + ++ Sbjct: 317 ---QQYEYISRISESSTALLGILNDILDLTKVEANKLELARTPFNLKKELGILAAVVLPE 373 Query: 343 AQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ 401 A+ K +E +I P + + D +RQV+LNL +NAVKFT G V + V Sbjct: 374 AEGKGLEFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDE-GSVSLRVRVVDSTNT 432 Query: 402 YIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 + ++D G GI E EI + + F Q + G GLGL I++ ++ GG Sbjct: 433 RVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRLVELMGGTLT 492 Query: 458 IRSKLREGVEVIAIL--PNTRVLNF 480 + S++ +G L P + Sbjct: 493 VGSRVNKGSTFRVELAFPLAEDVPP 517 >gi|258406426|ref|YP_003199168.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798653|gb|ACV69590.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 479 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 13/274 (4%) Query: 208 FKSNVKILSCQAEKDDLIAELEVA-KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 ++ L +K L E +A +S + R AEE N KS FLA+MSHE+RTPL+ Sbjct: 63 RAETLQALELTNKKLQLEIEQHLATQSELKKARDLAEEANEEKSAFLAAMSHEIRTPLHV 122 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 LG ++ E + + + H + HL +I +ILD S+IE+G +L E++ Sbjct: 123 ALGMLGIVLEEDL----PAEVQRKLRIAHDASSHLQGVIGDILDFSKIESGMLQLEETSF 178 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAI 385 S ++ R + L+ RA EK +E+ ++ +LS D +RQ++ NL+ NA+KFT Sbjct: 179 SFKEMARLIVQCLEPRAAEKGVELSTEVAETLSGYQRGDPYRVRQILFNLVDNAIKFT-E 237 Query: 386 GGRVHVTVGWTSGRGQY------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 G V ++ I ++D+G GIA ++ T+ F Q + G G Sbjct: 238 SGFVKLSAHLEPCGTATGTDMYAIEVQDSGAGIAPDKLQTIFERFIQLDQTQARRQSGSG 297 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 LGL I ++ GG + S+ +G LP Sbjct: 298 LGLSICANLAEMMGGTIRVSSQEGKGSLFSVHLP 331 >gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1080 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 142/342 (41%), Gaps = 13/342 (3%) Query: 135 EYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 +++ L L++ + L +V ++ + ++ + + + G Sbjct: 155 FQQAVWRYTLLAGILAVGLML---LVRSVLIAPLGRLGGVARRVTSEENFALRAPKGADD 211 Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L + + ++ L E+ + R+RAE E+ A + FLA Sbjct: 212 EIGELVDSFNAMLERIEQRNRLLGEQRRRLEMEVSERTAEFVGARERAERESKAMADFLA 271 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +++HE+RTP+ I+G ++ + +E++ + S LL++IN +LD SRI Sbjct: 272 AITHEVRTPMTGIIGLLDISLRGQL----EPRLREHLEIVRSSSHALLDVINGVLDFSRI 327 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVIL 373 EAG+ + +L + V + + + + E+++ + + L V D +RQV++ Sbjct: 328 EAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQVLV 387 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 N++ NA KFT G + V + +++D G GI + F Q Sbjct: 388 NIVGNAFKFTEQ-GEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQADA 446 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 ++ G GLGL IA+ ++ GG + S G Sbjct: 447 SVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFT 488 >gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1046 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 134/286 (46%), Gaps = 17/286 (5%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK------------RAE--EENLAK 249 + L +S + QAE + +LE + R+ RAE + K Sbjct: 308 SRTLQQSQANLEEQQAELEATNVQLEERTHELEAQRQYLIAARDDLLRSRAELAAASRYK 367 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHELRTPLN+ L + ++ G LN E K Y IH + LL LIN+IL Sbjct: 368 SEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVK-YARAIHSANNDLLALINDIL 426 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGM 368 DLSRIEAG EL + + +V + AQ+K +E+ +I P AD + + Sbjct: 427 DLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQFLADGQRL 486 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QV+ NLL+NAVKFT G V + + ++ D G GIA + + +F Q Sbjct: 487 QQVLKNLLANAVKFT-EHGSVALCIEGHGEGRIRFAVSDTGIGIAREQTEVIFEAFRQAD 545 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + G GLGL I++ + GG + S+ G LP Sbjct: 546 GSTSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTLELPV 591 >gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1224 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 8/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + A+ + AE AKS FLA+MSHE+RTP+NA LG +++ + + Sbjct: 607 ISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGL----S 662 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + KEY+ + LL +IN+ILD S+ EAG+ L + L ++ + + Sbjct: 663 DQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASAILG 722 Query: 345 EKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 EK IE + + V D + QV+LNL NA+KFT G + + Sbjct: 723 EKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIALLALEEKDAT 782 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G G+ + + T F Q + G GLGL I + ++ GGQ + S Sbjct: 783 LRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQMWVES 842 Query: 461 KLREGVEVIAI 471 + G I Sbjct: 843 EPGRGSSFSFI 853 >gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 911 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 93/414 (22%), Positives = 155/414 (37%), Gaps = 14/414 (3%) Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129 WSL +SL E L V + + + Sbjct: 508 SHSLFWSLCANLGAYVAVSL-----RRPPTAVEAGQA--RLFVDALKLSRPVGVALWRGR 560 Query: 130 GTWTPEYLTIYKSAT---LLIALSISALSNFMLPYAVFLS-FFPVVVALSTQAIMSMHVL 185 + + A + A + + A+ + V A S A Sbjct: 561 ADSGELQTLVGRFLGPERARAAFAGYARRHGVADPAMLEADADLVHFAESQLAGAIGSAS 620 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 ++ +A + ++ E + +L R +E Sbjct: 621 ARAVVASVAQEEPLSPAEVMEILDEASQLRRYSRELERKSQQLATTTRELTAANARLQEL 680 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K F++S++HELRTPL +I SE++ + P + + I + L L+ Sbjct: 681 DRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIP--PPERQRFHAIIVGETERLTRLV 738 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 N+ LDL++IE+G E + I L +V + ++K + + ++ + + AD Sbjct: 739 NQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLELPQRVPPLLADR 798 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 + QV+LNLLSNA KF GGRV V + T + + DNG GIA E + F Sbjct: 799 DRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEG-LRVDVADNGKGIAPEEQQLIFERFR 857 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 QG + G GLGLPI++ I+ + GG+ + S G +LP V Sbjct: 858 QGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLPRAAVGQ 911 >gi|163794230|ref|ZP_02188202.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180398|gb|EDP64919.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 559 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 147/296 (49%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + L G+ + + K N ++ +L + + Sbjct: 259 IDRTLWPLLGIGLALFGLGWLVLRRIGKVNQELREQATALHRANEQLSENAAQVRSALQS 318 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE AKS FLA +SHELRTPL AI+GFS++++++ +EY IH S QHL Sbjct: 319 AEHATRAKSSFLAGISHELRTPLTAIIGFSQILKIQHRPGKTKSREQEYAEIIHDSSQHL 378 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 LNL+N+ILDLS+IE+G YEL E+ I L+ +L A + I + + L ++ Sbjct: 379 LNLVNDILDLSKIESGSYELDETWIDLVREANAVRALLAHEASRRGIAVSLDLQDQLPAL 438 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 + D KG+RQ+++NL+SNA+KFT GG V +++ S G + I DNG GI E ++ Sbjct: 439 YGDIKGIRQIVINLVSNALKFTDRGGWVRLSMRVESDGGLLLEISDNGAGIPTDEQSSIW 498 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 +F + S +G GLGL + + + H + + S L +G V RV Sbjct: 499 EAFKRARNPGLSTAEGAGLGLHLVKILANLHDAEVGLESTLGQGTRVWVAFGPERV 554 >gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus] gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus] gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820] gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803] gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171] gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus] gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus] gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820] gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803] gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171] Length = 455 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 8/302 (2%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS 233 L+ Q I + I + F T + K+ + I + Sbjct: 157 LTYQFIFVGAITFIITVITMFLLSRFLTKPLIRMKKATETMSKGDLSVSLNINGKDEVGE 216 Query: 234 LSDETRKRAEEENLAKSR---FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 L+ +K A++ N K FLAS++HELRTPL I G++++I ++ + K Y Sbjct: 217 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKT---KMSTQDQKHY 273 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + I H+ L+ ++ +L+++E + ++ +L D+++ + +Q EKNI I Sbjct: 274 LSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI 333 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 L + DE+ QVILNLL+NA + + ++ V V Q I +KD G Sbjct: 334 IFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQII-VKDEGE 391 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI E ++P + F + + A G GLGL I + I+ H G ++S+L G Sbjct: 392 GIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTI 451 Query: 471 IL 472 +L Sbjct: 452 LL 453 >gi|331083570|ref|ZP_08332681.1| hypothetical protein HMPREF0992_01605 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403781|gb|EGG83333.1| hypothetical protein HMPREF0992_01605 [Lachnospiraceae bacterium 6_1_63FAA] Length = 446 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 143/317 (45%), Gaps = 11/317 (3%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK----IL 215 V + V + + + + I LA + + + +++ + Sbjct: 134 VLRVAKTTDSVFHTMVSSFTLMGILFLIILALGFLLIERQTKKLIEPINRLDLEHPLKNV 193 Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + L E K ++ + + ++ + F A++SHEL+TPL +I G++E+++ Sbjct: 194 EYEELRPLLNRVDEQNKQIASQ-VEELKQAEAVRREFSANVSHELKTPLMSISGYAEIMK 252 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + P + E+ G I+ L +L+ +I+++S+++ E+ + + +I ++ Sbjct: 253 NGMVRPQD---ISEFAGRIYDEASRLTSLVQDIIEISKLDEKSGEMPFENVDIYEIAQDI 309 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 L L++++KNI + + S ++ + ++ NL+ NA+K+ GG V V++ Sbjct: 310 CQNLTLQSKKKNITLSI--EGSNVEIYGVRHILYEMCYNLVDNAMKYNREGGYVKVSLST 367 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T +++DNG GIA+ E + F + + G GLGL I + A H Q Sbjct: 368 TEDH-VCFTVEDNGIGIAKEEQERIFERFYRVDKSHSRKTGGTGLGLSIVKHGAALHHAQ 426 Query: 456 FLIRSKLREGVEVIAIL 472 + S+ +G ++ Sbjct: 427 ITLNSEPEKGTKIQVFF 443 >gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 657 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 130/264 (49%), Gaps = 20/264 (7%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ +++AEE N KS F+++MSHE+RTPLN+I+GF+ ++E ET G NE K Sbjct: 410 QQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEETRG---NENLK 466 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I + LL LIN+ILDLSR+E+GR + + L+ + Q + I Sbjct: 467 EYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQILDLVPHCANIVAGFQTNIAK-GI 525 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKD 407 ++ K D ++QV++NL+ NAVKFT G + + V + + S+ D Sbjct: 526 KLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQK-GSIILEVKPNNVSQEWIFSVTD 584 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + V F + QG GLGL I Q + N GG+ I + +G Sbjct: 585 TGCGIPPEKQKVVFERFNKLDE----YAQGTGLGLSICQITIENLGGRIWIDPEYTKGAR 640 Query: 468 VIAILPNTRVLNFIPEDNHESTQY 491 + LP HE+T Sbjct: 641 FMFTLPYK----------HETTDI 654 >gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 756 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 7/254 (2%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + + + + E R AEE K FLA+MSHE RTP+N ++G +++++ + Sbjct: 352 ERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMTQMLQATDL-- 409 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +E + Y I S + LL+LIN++LDLSR+ A L L VR+ +L Sbjct: 410 --SEDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHACVRDTARLLSS 467 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGR 399 +A+EK + + +IDP + V D++ +RQ+++NL+ NAVKFT G + ++ + Sbjct: 468 QAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTIRLSAALSGDE 527 Query: 400 GQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 I+++D G GI ++ + F Q AI G GLGL I++ + GG + Sbjct: 528 IALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIHV 587 Query: 459 RSKLREGVEVIAIL 472 S EG L Sbjct: 588 TSTPGEGSCFTLTL 601 >gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33] Length = 655 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 8/235 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 K F++ +SHELRTPL ++ +++ +G L+ E + +G S + L+ Sbjct: 416 AIERMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQQ-MLGIADDSTERLVR 474 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N +LDL RIE+G+ + A + +++ ++A + E+ P SVWA Sbjct: 475 LVNNVLDLQRIESGKVIMECQACNAANLM--IQAAEAMQAMAQQQEVTLVKQPQDISVWA 532 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIP 418 D + Q + NLLSNA+KF++ GG V +TV + ++D G GI ++ Sbjct: 533 DADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGIPADQLE 592 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q + + G GLGL I + I+ H G+ S G LP Sbjct: 593 RIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFTLP 647 >gi|228991892|ref|ZP_04151828.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM 12442] gi|228767621|gb|EEM16248.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 163 IFLAVLLGFIVVLSIVFIAIAARYIVRPIRIFTKATQKIANGEYDIELEEGRKDEIGTLS 222 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 K ++ + E + + F++++SHE ++PL++I GFS+ ++ E + + K Sbjct: 223 TSFKKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---KMTEDERK 275 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L + +++ I ML+ + +EK+I Sbjct: 276 RYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDI 335 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + +V DE + QV N+ +N++KFT GG + V ISI D+ Sbjct: 336 AVEFDVPS--INVRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEA-SVVISISDS 392 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G+ + S EG Sbjct: 393 GIGMEQEEVERIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGEISVESIRGEGTTF 452 Query: 469 IAILPN 474 LP Sbjct: 453 RIELPK 458 >gi|86748376|ref|YP_484872.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86571404|gb|ABD05961.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1122 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 159/358 (44%), Gaps = 10/358 (2%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 L + + + +++ + L+ ++L P A + Sbjct: 553 VLPQRVHALLNSQVGHYLSVFMVSAGLVGLT----LMMIYLQAAPATDAQQILLSEILWK 608 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L +L+ ++ F + + I + ++ AE Sbjct: 609 LFFALSIIIGVVTWLFVLARQSRQAAEAETRRQTTLLMQEIDAHRQTDAELQRAKEVAES 668 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 NLAKSR++ +SHELR+PLNAI G+++++E ++ I + RS HL L Sbjct: 669 ANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ---DASLPPRPRDQIRLMRRSADHLSGL 725 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 I+ +LD+S+IEAGR LS + + + + + M +L+A K+++ K L V+A Sbjct: 726 IDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVGMFRLQATAKDVDFVFKRPQYLPPVVYA 785 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DEK +RQV++NLLSNA+KFT G + + ++D GPGI ++ + Sbjct: 786 DEKRLRQVLINLLSNAIKFTQEGSVHFIVHYRNP--VAELEVRDTGPGIHADDLERIFAP 843 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F +G++ + G GLGL I++ + GG + S L +G L + V N Sbjct: 844 FERGALGVSQPHTGTGLGLTISKLLAGVMGGDLSVTSTLGQGSTFRVKLLLSEVTNPT 901 >gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1374 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 14/300 (4%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 L + + Q E +L +A+++ +E K + KS FLA+MSHE Sbjct: 616 LRVTNEELEERTKALEEQQVEMQGKNDQLHLAQNVVEEKAKELASASKYKSEFLANMSHE 675 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN+IL S+++ G L N+ E I+ SG LL+LINE+LDLS++EAG+ Sbjct: 676 LRTPLNSILILSQLLASNKAGNL-NDKQIESAKAINSSGSDLLSLINEVLDLSKVEAGKV 734 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 EL +S +I ++ + Q A +K + + L + D ++Q++ NLL+N Sbjct: 735 ELQIEDVSFQEIEQDINRLYQDIAVDKGLYFDIALAADLPNEIKTDSLRLQQILRNLLTN 794 Query: 379 AVKFTAIG----------GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 A KFT G V + ++KD+G GI + + + +F Q Sbjct: 795 AFKFTHEGAVTLSITQPTNEVAARMQQPKQSLVAFTVKDDGIGIKKEKQLGIFQAFQQAD 854 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 + G GLGL I++ + GG L++S +G +LP E+ +S Sbjct: 855 GSTSRKYGGTGLGLSISKELTHLLGGTILLKSDEGKGCAFTVVLPLE--FQPKDEEADKS 912 >gi|325679937|ref|ZP_08159506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324108375|gb|EGC02622.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 1233 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 11/264 (4%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 LIA + AK ++ A + AKS FLA MSHE+RTP+NA+LG +E+I E Sbjct: 683 LIAMQDEAKRQLKQSADSAIAADEAKSSFLAQMSHEIRTPINAVLGMNEMILREC----T 738 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ KEY +I +G+ LL+LIN ILD S+IE G+ E+ +A ++ + + + RA Sbjct: 739 DDDIKEYAVNIQSAGRTLLSLINSILDFSKIEDGKMEIIPAAYGTASMINDLVTAVSARA 798 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----G 398 K++ + DP+L + D+ ++QVI NLL+NAVK+T G V +TV Sbjct: 799 AAKDLTLKVNADPALPAKLIGDDMRIKQVISNLLTNAVKYTEK-GSVTLTVKAEDLTEKD 857 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 Y+ + D G GI E +I + +F + + +G GLG+ I ++ G + + Sbjct: 858 MVLYVEVADTGIGIKEEDIGALFETFRRLDEKRNRSIEGTGLGMSIVTKLLEMMGSELHV 917 Query: 459 RSKLREGVEVIAILPNTRVLNFIP 482 S G L + + P Sbjct: 918 ESIYGVGSTFWFRL-KQSIADSSP 940 >gi|90413941|ref|ZP_01221926.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK] gi|90325003|gb|EAS41518.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK] Length = 908 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 21/323 (6%) Query: 166 SFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAE----- 220 + V +A +++ M L +LA + LS + + + L +++ Sbjct: 290 TLMSVYLAAILLSMVVMCYLGTNLARRILFYLSRVIQTMSKIEEDHNAALKVKSDGNDEF 349 Query: 221 ------KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + L+ + +++ + ++ AE+ N+AKS FLA+MSHE+RTPLN I+G S ++ Sbjct: 350 TVFTSKLNQLLEDRHFSQANIIKAKEEAEKANVAKSSFLANMSHEIRTPLNGIIGMSGIL 409 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + N + EY+ I S Q LL LIN+ILDLS+IE+G LS +L ++V + Sbjct: 410 SDTEL----NPSQAEYLQTIETSSQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYD 465 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 I ++Q +A E+ + + ++DP L + V DE +RQV++NL+SNAVKFT G V +++ Sbjct: 466 TITIVQAKASEQGLNLQIQLDPELPTSVMLDEHRLRQVLMNLMSNAVKFTLQ-GSVTLSI 524 Query: 394 GWTSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 +T SIKD G GI + + V F Q +I G GLGL I + ++ Sbjct: 525 TYTDIGDKKASLLFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLV 584 Query: 450 ANHGGQFLIRSKLREGVEVIAIL 472 GG ++S+ G + L Sbjct: 585 ELLGGSIELKSEKGFGSDFYFSL 607 >gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60] Length = 1520 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 13/273 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + I A++ + AE N AKS FLA+MSHELRTPLNAILG ++ + Sbjct: 737 NRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTH 796 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 +Y + + LL L+N+ILD S+IEAG+ EL SL +++++ ++L Sbjct: 797 ----RQADYATKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSS 852 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 +++K +E+ IDPSL + D ++QV++NL NA+KFT G V + + + Sbjct: 853 SSRQKPVEVLFDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTER-GEVTLFIRLLAQDQ 911 Query: 401 QYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 Q ++ ++D G GIA + + + F Q +I G GLGL I+Q + GG Sbjct: 912 QTVTLHFGVRDTGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTL 971 Query: 457 LIRSKLREGV--EVIAILPNTRVLNFIPEDNHE 487 + S+ +G LP + P+D + Sbjct: 972 QVESEPGKGSLFHFTLTLPLA-AADAHPDDQSQ 1003 >gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 962 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 8/259 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ +++ N Sbjct: 462 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDAN----R 517 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S LL +I++ILD S+IE+ + ++ S + +++ + +K +E Sbjct: 518 LVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPLVVKKRLE 577 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ IDP + + D ++QV+ NLLSNA+KFT G + V + ++D Sbjct: 578 LYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDT-GCIVFQVVCSDEGYLVFKVRDT 636 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F Q ++ QG GLGL I + +++ G I S+ G E Sbjct: 637 GVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEF 696 Query: 469 IAILPNTRV--LNFIPEDN 485 +P R +P + Sbjct: 697 GIRIPLYRASYPQTLPLPD 715 >gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 576 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 24/277 (8%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + E + + +E E + KS FLA+MSHELRTPLNA++GFSE ++ +G + Sbjct: 290 RDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDM 349 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + + YIGDI SGQHLL+LIN+ILDLS++EAG L + L +++ +++++ + Sbjct: 350 TDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQ 408 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS----- 397 A + I++ + + + D + +Q++ NLL+NAVKF+ GG V + V S Sbjct: 409 AALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAG 468 Query: 398 ------------------GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 + +S+ D G GIA+ ++ + +F Q + +G G Sbjct: 469 VIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 528 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 LGL + + + HGG + S G + LP Sbjct: 529 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRP 565 >gi|229018482|ref|ZP_04175344.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273] gi|229024738|ref|ZP_04181177.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272] gi|228736581|gb|EEL87137.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272] gi|228742834|gb|EEL92972.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273] Length = 443 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 148 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRTFTRATQKIASGEYDIELDENRKDEIGTLA 207 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 208 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 260 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L L +++ I ML+ + +EK+I Sbjct: 261 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQMKEFHLQKQIKDVIFMLEWKWREKDI 320 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + + DE + QV N+ +N++KF+ GG V V ISI DN Sbjct: 321 AVEFDVPD--IVINGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEKLES-SIVISISDN 377 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 378 GIGMEKEEMDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHQGTVSVYSTKGEGTTV 437 Query: 469 IAILPN 474 LP Sbjct: 438 RVELPK 443 >gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 683 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 14/275 (5%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + RKRAEE AK+ FL+ MSHE+RTP+NAI+G S ++ T+ PL Sbjct: 131 ITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLPPL-- 188 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 Y+EY + S ++LL L+N ILD +++EAG+ L E L ++ L ++A+ Sbjct: 189 --YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSVKAE 246 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG--- 400 EK + I + DP + ++ D + QV+ NLL NA+KFT G V + V G Sbjct: 247 EKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQ-GAVTLAVRRLHGDAEGV 305 Query: 401 -QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + D G GI + ++ + +F Q S I G GLGL I Q ++A HG + + Sbjct: 306 FLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKMRVE 365 Query: 460 SKLREGVEV----IAILPNTRVLNFIPEDNHESTQ 490 S EG + + V P ++ + TQ Sbjct: 366 SVPGEGSSFAFDVRLKIASGAVALDAPAEDLQDTQ 400 >gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 602 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 111/462 (24%), Positives = 183/462 (39%), Gaps = 30/462 (6%) Query: 42 VESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIG 101 + + +S + + V+ + W + +W + V A L + Sbjct: 109 ISAAGGLSSPVAMLVVALPFEAWWIGASRRAALWGAASAVVAIALQPLSAAFLPFAGAQI 168 Query: 102 EVYVWRIWLLVGQIAIGLCWT---LLTLVEPGTWTPEYLTIYKSATLLIALSISAL-SNF 157 + W + L + + I + L +A L ++ Sbjct: 169 AAWHWLVPLAWALTVVPRVAAFRDTAGAADRVDTGDRLEDIIDAVVLRVARHGEVLDASA 228 Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF--------- 208 + L + + + A + + + Sbjct: 229 RARTLLKLPPELLSGTGFFDRVHLSDRVAYLSALADMRDGALSRRLELRIRLPQNGNGQG 288 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA----------------KSRF 252 + + + + +L+ E + R+ E L K RF Sbjct: 289 DNRLMADNYRPFALELVRGEEQGDVFTLVLRENDETARLREELAQANEAAAAAEVAKGRF 348 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LA +SHELRTPLNAI+GFS+++ E G + KEY+G + SGQHLL ++ ILD+S Sbjct: 349 LAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVS 408 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 RIE+G Y ++ V C M++L+AQ KNI++ +I P + AD + ++Q++ Sbjct: 409 RIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQIL 468 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 +NL+SNAVKFT GG V V G + ++D G GIAE + + F Q Sbjct: 469 INLVSNAVKFTPDGGDVVVGAKRI-GSRLHFWVRDTGIGIAEEDFANLGKPFMQIQNDYT 527 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +G GLGL + + ++A H G I S EG V LP Sbjct: 528 RRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 569 >gi|225414556|ref|ZP_03761745.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme DSM 15981] gi|225041912|gb|EEG52158.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme DSM 15981] Length = 465 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 160/364 (43%), Gaps = 20/364 (5%) Query: 125 TLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHV 184 + G+ + T+L SA S+ +L AV S + L A M Sbjct: 108 AALAEGSGYAIRRSATLGRTMLYVAMRSAHSDNVLRLAVPYSGMREYLPLLFPAAMGS-- 165 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQ-------------AEKDDLIAELEVA 231 ++LA +A F + +T L + ++L + E + + Sbjct: 166 FMLALACSIAATERFVSSVTRPLRVISREMLKVRGDYRSLKFEPSPYPEINVIADTTMEM 225 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 +E R E+E + F ++ SHEL+TP+ +I G++E++E + N +++ Sbjct: 226 SRDVEEYLARIEKEKQIRQEFFSNASHELKTPITSIQGYAELLEGGLIRDEN--MQRDFA 283 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 G I + + LIN+IL +SR+E E+ + + + ++ E + L+ +A + I Sbjct: 284 GRIKKEAVRMTGLINDILMISRLETKEAEVVMTDVRVSVLLEEIVGGLKPQAAAGQVFIH 343 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 P + A+ + MR++ NL+ NAVK+ GG+V V V + + ++DNG G Sbjct: 344 IDCQP--LMIRANAQHMRELFTNLIGNAVKYNRPGGQVWVNVRESDRQMVA-RVRDNGVG 400 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I E + + F + + G GLGL I + I+ + G + SKL EG E + Sbjct: 401 IPEDSLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVGYYHGTIRVESKLDEGSEFVVT 460 Query: 472 LPNT 475 LP Sbjct: 461 LPME 464 >gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] Length = 959 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 9/296 (3%) Query: 200 FTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + + + ++ + + A+ + L + + A+ + AKS FL+ MSH+ Sbjct: 402 IIAVDNPYGQDTLSVMLFRVLDEQHAAQARQ-EQLLRDALEEAKAASNAKSDFLSRMSHD 460 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+NAI+G S + + + I S ++LL+LIN+ILD+S+IE G+ Sbjct: 461 IRTPINAIVGMSTI---GQLKIDDRNQSVNCFKKIDDSSRYLLSLINDILDMSKIENGKM 517 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSN 378 L++ L +++ ++ ++ KNI+ + SL + D M Q+++NLLSN Sbjct: 518 ALTDEQFDLHELINSITAIVYSQSVFKNIQFEVYCEDSLQQYYLGDALRMNQILMNLLSN 577 Query: 379 AVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 ++KFT GG + + V + R + D+G G++E + + F Q + Sbjct: 578 SLKFTPAGGMITLHVKESKRRCGYSYLAFQVTDSGKGMSEDFMKRLYQPFEQEAADTARN 637 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 G GLGL I +++ G + S+L EG +P V + I ++ Q Sbjct: 638 LTGTGLGLSIVYNLVQLMNGTINVESRLGEGTVFSIEIPFRLVEDEIWKEEQRKQQ 693 >gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf] gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf] Length = 615 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 140/265 (52%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ E + + A+ K I I + + D + ++ILNLLSN++KFT GG + Sbjct: 442 SLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V + G YI +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVKIK-DCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I+S+L +G E I LP Sbjct: 561 EMHKGTVHIKSELGQGTEFIIKLPA 585 >gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1276 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + + AE N K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ Sbjct: 1018 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1077 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y EY DI RSG+H+L+++N++LD+S+IEAG +L +A+ L + V E + ++Q + Sbjct: 1078 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1137 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + ++ V AD + ++Q+ LN+LSNA++FT GG++ V+ + + Sbjct: 1138 ANGQRVIIRTALSQAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1197 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G G+ E+ + F Q S G GLGLP+ ++++ + F I S Sbjct: 1198 LRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINSA 1257 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1258 PNEGTLVEITFPSQRVL 1274 >gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] Length = 584 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 4/234 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTP++ + G+SE I + + E E I+ + Sbjct: 353 RLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDV--ASSKEEKNELAQIIYEESLRMGR 410 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+NE+LDL+R+EAG+ +L ++++ + + Q ++E+ +E+ +D Sbjct: 411 LVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMVELELTVDIEHQIGEM 470 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + QV+ NL+ NA++ T+ G V V + ++ Y+ +KD+G GI E ++P + Sbjct: 471 DPDRIEQVLTNLIDNAIRHTSNNGFVKV-LAVSNQDKLYVEVKDSGSGIPEEDLPFIFER 529 Query: 424 FGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F + + K +QG GLGL IA++I+ H G ++SKL G +P + Sbjct: 530 FYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTFSFEIPIKQ 583 >gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 833 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 91/473 (19%), Positives = 163/473 (34%), Gaps = 57/473 (12%) Query: 13 GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72 G +++P + + D E +F ++ L + + Sbjct: 9 GRMMAPLRW---MASRLRNRPDSEHEMSFNRLVFAFIIVIVLLLNRRSGGVDNALDVMAL 65 Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 + + + + + R + L W L Sbjct: 66 YIPLALGVLAHILVWPGVSRG-------------RRIFALLLDCGFLSWQL-----HLGG 107 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 L ++ + + V +T L + L Sbjct: 108 EIAALFFPIYLWVIFGNGFRFGLASLFTAIPVATLCFAAVVWTTPFWRQQWHLSLGLLIG 167 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 L ++ + L K AEE + AKS F Sbjct: 168 LVILPAYAGTLIRKLSA----------------------------ATKVAEEASQAKSLF 199 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 LAS+SHELRTPL AI+G + ++ ++ +E I + + + L +LI+ +LDLS Sbjct: 200 LASVSHELRTPLTAIVGMTGLLRTTSLAS----DQREMIETVEVATRSLRSLIDGLLDLS 255 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 RIEAGR + L+ ++ + +++ +A+E+ + + P + + + + Sbjct: 256 RIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDIHVTPRTPLGLVGSRQHLHEA 315 Query: 372 ILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGPGIAEGEIPTVLTSFGQGS 428 ++NL+ NAVKFT GG + V I + D G GIA G+ + F Q Sbjct: 316 LVNLVGNAVKFTQQGGVTLAVDAEPAEDGRLSLVIEVSDTGIGIAPGDQERIFEDFTQAD 375 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 +I + G GLGL I + ++A GG + S +G +P Sbjct: 376 ASILNRFGGTGLGLAITRRLVALMGGTISVDSAPGKGSTFRFHVPVVPASEEP 428 >gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM 13855] Length = 720 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 134/274 (48%), Gaps = 7/274 (2%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + N+ +L L+ + ++ + ++ AEE + KS LA+MSHE+RTPL +I Sbjct: 434 RQFNLHLLELLGGYAALVLDRLRREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSI 493 Query: 268 LGFSEVIELETMGPLNNE------TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 +GFSE IE E T + I ++G+ LL+ ++ +L+LSR+EAG+ +L Sbjct: 494 IGFSETIEEEADLLEATPADANPSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDL 553 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 + I L ++ + + L +A+E + + P D GM+ + NL+SNA+K Sbjct: 554 AAERIPLDELAKGLVDELHPQAEEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIK 613 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 +T GGRV V + + + ++D G G+ + V F Q S + +G GLG Sbjct: 614 YTEEGGRVRVR-SYRAEDAAVVEVEDTGIGMDADTVEHVFEPFRQASEGLNREYEGTGLG 672 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 L + + ++ G + ++ G V LP Sbjct: 673 LAVTKQVIEKMNGDIEVDTEEDAGTCVRLRLPRA 706 >gi|261253028|ref|ZP_05945601.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260936419|gb|EEX92408.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 769 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 147/369 (39%), Gaps = 11/369 (2%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 + + + L P T Y + L+ + Sbjct: 100 ARAMSNDSSLNSVDDGIFDLRTPIT-NGGVPYAYVDIGFETGPINAMLAQAQKAIIGIAT 158 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 ++VAL + + + ++ + S ++ DD+ A Sbjct: 159 VEVILVALVSFVLGTYLTRGLTRLASAVNTVGQRGPGFQLQEHSKDELGEVTKAFDDMSA 218 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 +LE R+ AE+ +KSRFLASMSHE+RTP+N +LG ++E + Sbjct: 219 KLEKDYQTLTAAREGAEQACDSKSRFLASMSHEIRTPMNGVLGILNILEETNLTN----E 274 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K+ + SG LL++IN+ILD +R+E+ L V + A + Sbjct: 275 QKKLVSTATESGHFLLSVINDILDFTRMESNTLILEHKPFDFRHCVESVVDTFSPAATNQ 334 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----Q 401 N+ + I+ S+ V DE ++Q++LNL+ NA+KFT G V + V T Sbjct: 335 NLILHCYIEGSVPSKVNGDENRVKQILLNLIGNAIKFTHE-GSVTIKVCATPLDNGKAKI 393 Query: 402 YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 I+D G GI++ I + F + +++G GLGL I + + G+ + S+ Sbjct: 394 TFEIQDTGIGISQNAIDYLFDEFTMVDQSYSRSKEGSGLGLAICRRLCNLMDGEVSVISE 453 Query: 462 LREGVEVIA 470 G + Sbjct: 454 PDIGSTFVF 462 >gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 663 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 141/294 (47%), Gaps = 15/294 (5%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + LS + I A++ R AE + AKS FLA+MSHELRTPL Sbjct: 238 RLVINGAGELSEVVDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLT 297 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +ILGFS +I G + + + Y+ I +G+ LL ++N+ILD S++EAG LS Sbjct: 298 SILGFSRLI---GAGGDLSASDRGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEP 354 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKI----DPSLSSVWADEKGMRQVILNLLSNAVK 381 S+ + +L+ +A+ K + + +I + + D +RQV+LNLL NAVK Sbjct: 355 FSVAALGEGATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVK 414 Query: 382 FTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 FT G R+ ++V +S + D GPG+A G+I + F Q ++ G Sbjct: 415 FTERGNVRLSLSVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGT 474 Query: 439 GLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDNHESTQ 490 GLGL I++ +M GG+ RS G LP V P+ + Sbjct: 475 GLGLAISRRLMDVMGGEIGARSDGSTGSTFWFRTVLP---VAETAPDAAGRDSD 525 >gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] Length = 448 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 153 IFLAVLLGFIVLLSIIFIAIAAGYIVRPIRTFTKATQKIASGEYDIELDENRKDEIGTLA 212 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L +L +++ I ML+ + +EK+I Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDI 325 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + S+ DE + QV N+ +N++KF+ GG + V ISI DN Sbjct: 326 AVEFDVPD--ISIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESG-IVISISDN 382 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 383 GIGMEQEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTV 442 Query: 469 IAILPN 474 LP Sbjct: 443 RVELPK 448 >gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 444 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 90/455 (19%), Positives = 165/455 (36%), Gaps = 38/455 (8%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 + + L +L A + W + ++ Sbjct: 3 RMQNQVVFSLLLLAAAIMFLWALSAAGLLITGAAMALGILIAAAMAVLAPRFISLPLS-- 60 Query: 105 VWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVF 164 ++ +IA G + + E + + A L A+ Sbjct: 61 --KVAETAEKIAEGDLNKTIRVYEGDEVGKLAQSFNQMAQRLRGTLSLVTDEKNRMQAIL 118 Query: 165 LSFFPVVVA-------LSTQAIM--SMHVLDISLAGMLATALSFFTYITYHLFKSNVKIL 215 S V+A + ++ + + + + G + + ++ Sbjct: 119 DSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDYELDRLFRQALDSGR 178 Query: 216 SCQAEKDDLIAELEVAKSLSD----------------ETRKRAEEENLAKSRFLASMSHE 259 + E L E + + R++ E ++ F+A+ SHE Sbjct: 179 PLKQELRILTPEPRIFRVHLTPLRGPQGGVVALFRDITERRQLE---QMRTEFVANASHE 235 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPL +I GF E + + ET + ++G I L L++++L L+ IE R Sbjct: 236 LRTPLTSIRGFIEALRDGAINE--PETARRFLGIIEEETDRLTELVDDLLKLATIEERRN 293 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 + L +V+ + RA++K + + ++ L V D+K + Q+ +NLL NA Sbjct: 294 MFGRLPVELPGVVQRAVDTFASRARQKGVALRVELADGLPPVIGDQKLLTQMFINLLDNA 353 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 VKFT G + + + G + + D G GIA +P + F +G A + G G Sbjct: 354 VKFTEK-GEITIRAAA-AEGGVEVEVLDTGAGIAPEHLPRIFERFFRGDKART--QGGTG 409 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 LGL I + I+ HGG+ + SK +G LP Sbjct: 410 LGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLPA 444 >gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1292 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Y I R+G Sbjct: 912 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQLDH----KQRSYTESIRRAG 967 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + ++ Sbjct: 968 SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGLLG 1027 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLLSNA+KFT G V + + +G + D GPGI + Sbjct: 1028 DITASGDPTRIRQILLNLLSNAIKFTER-GVVGLKLSTLGSYQGLRFEVADTGPGINADQ 1086 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GG + S+L G + LP Sbjct: 1087 KVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1146 Query: 476 RVLN 479 V + Sbjct: 1147 WVAS 1150 >gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 616 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE N KS FLA+MSHE+RTPLNAILGFS +I N E +Y + ++ Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LINEILDLS+IE+G E + + +SL + + R + +E+ + Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRC-QPGVELVFEESDPSLV 362 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + QV NL+ NA KFTA G + T + I D G GI++ +I + Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAK-GSISFGYKLTE-KEIVFHIADTGSGISDDKIDKI 420 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + QG GLGL I++ I+ GG+ ++SK+ G LP Sbjct: 421 FDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 853 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 9/272 (3%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNA 266 + +IL + D++ + E + E + A+ N AKS FL+ MSH++RTP+NA Sbjct: 287 IGNKRQRILMTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDMRTPMNA 346 Query: 267 ILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI 326 I+G + + + P + ++ + I S QHLLNLINE+LD RIE+G++ L E Sbjct: 347 IIGLTTIAKNH---PGDTGKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFFLEEKPF 403 Query: 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAI 385 +L ++ + + M + Q + + + ++ D + ++++ LN+LSNA+K+T Sbjct: 404 TLSGLIGDTLAMTRPAIQRQKHTLRVNVRQLEHETIKGDPQRIQEIFLNILSNAIKYTPD 463 Query: 386 GGRVHVTVGWTSG-----RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GG + T+ + +DNG G+++ + F + + + QG GL Sbjct: 464 GGVITWTISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNHIQGTGL 523 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 G+ IA +I G + S+ +G L Sbjct: 524 GMTIALTIARLMNGSIDVESEAGKGSRFTVTL 555 >gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 616 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE N KS FLA+MSHE+RTPLNAILGFS +I N E +Y + ++ Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LINEILDLS+IE+G E + + +SL + + R + +E+ + Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRC-QPGVELVFEESDPSLV 362 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D + QV NL+ NA KFTA G + T + I D G GI++ +I + Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAK-GSISFGYKLTE-KEIVFHIADTGSGISDDKIDKI 420 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + QG GLGL I++ I+ GG+ ++SK+ G LP Sbjct: 421 FDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] Length = 619 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 9/248 (3%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + F+A++SHELRTPL +I G+ E + G T ++ I R Sbjct: 366 ELRRLEKIRKDFVANVSHELRTPLTSIKGYVEALLDG--GKDEPATATAFLEIIMRQSNR 423 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +++++L LS+IE+G+ + L ++ + +++ A +K+ I + Sbjct: 424 LNLILDDLLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWV 483 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG-------WTSGRGQYISIKDNGPGIA 413 V DE+ + QV +NLL NAVK+T GR+ + + T I + D+G GI Sbjct: 484 VEGDEERLVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIP 543 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 E + P V F + A G GLGL I + I+ H GQ + G + LP Sbjct: 544 EADRPRVFERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLP 603 Query: 474 NTRVLNFI 481 + + Sbjct: 604 VAQDSSTA 611 >gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR [Sphingobacterium spiritivorum ATCC 33861] gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR [Sphingobacterium spiritivorum ATCC 33861] Length = 343 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 161/347 (46%), Gaps = 17/347 (4%) Query: 140 YKSATLLIALSIS---ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 +K L+ A ++ ++ +F + + +F ++L ++ + + + + T Sbjct: 3 FKLLVLINAAAVGLSISIVSFYYQHDIKAAFIIFGISLIVSFVVFYFLFEKYIYRRINTI 62 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR----- 251 + L K L + DD I + E + D +++ E + +S+ Sbjct: 63 YKLIHNL--KLGKDLKDALG-EYVSDDPITDAER--EVRDWAKEKKSEIDKLRSQEKFRR 117 Query: 252 -FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FL+++SHE +TPL AI G+ E ++ + + E K ++ ++ L LI+++ + Sbjct: 118 EFLSNISHEFKTPLFAIQGYIETLQDG-LIEEDPEMAKGFLDKASKNLDRLSYLIHDLDE 176 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMR 369 +S++E+GR L+ L ++++E I L +A+ + I+I K +++ V AD K ++ Sbjct: 177 ISKLESGRISLNIEKFDLSELIKETIENLDDKARSQKIDIVFKQKYQNVTFVKADRKKIQ 236 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 QV+ NL+ N++K+ GG + + + + + D+G GI E +P V F + Sbjct: 237 QVLTNLIDNSIKYGKTGGSTDIRIFPLFEQ-VLVEVTDDGQGIEEKNLPRVFERFYRTDK 295 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + G GLGL I + I+ H +RS G L ++ Sbjct: 296 SRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEKSK 342 >gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 586 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217 + + ++ L T I++ +L G+++ FF I L KS +++ Sbjct: 1 MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L + + E+ N KS +A++SHELRTPLN I+G S ++ Sbjct: 61 VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + E +EY+ I+ S L ++ ++I+DL +I++ R EL I ++ + Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L A++ I+ L + ++ D + Q++ NL+SNAVKFT GG ++++V Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+KD G GI + E V F Q + + QG G+GL I++ I GG Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + S++ +G + P + +S + +A Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322 >gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1225 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ T + T + Y I R+G Sbjct: 845 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 900 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 901 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 960 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 961 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 1019 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG+ A S G GLGL I Q + GG + S+L G + LP Sbjct: 1020 KARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 1079 Query: 476 RVLN 479 V + Sbjct: 1080 WVAS 1083 >gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120] gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120] Length = 591 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 +S F+ ++SHEL+TP+ A+ GF+E + M + K+++ I L LI +I Sbjct: 366 RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEMLLKKFLTIIKEESDRLHRLIMDI 423 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKG 367 L LSRIE + + + D++ + + A EKNI++ + + ++ D Sbjct: 424 LALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKNIQVTIPEKTSTPVTIETDRDK 483 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++Q+++NLLSNA+ +T + G+V V + I + DNG GI +I V F + Sbjct: 484 LQQILINLLSNAINYTPVDGKVEVKL-IDHEAEVIIEVTDNGIGIPAKDIDRVFERFYRV 542 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A G GLGL I + ++ N GG+ + S+ G L Sbjct: 543 DKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTL 587 >gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 797 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 3/235 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + K F++++SHELRTPL ++ ++ + + K+ + + L+ Sbjct: 563 QLDRMKDEFISTVSHELRTPLTSLRAALGLVTGGALATRPD-KMKQMLQIAIANTDRLVR 621 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N+ILD+ RI +G EL + D++ + Q + N+ + + VWA Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRV--ESNDVRVWA 679 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D + Q + NL+SNA+KF+ G + +T + + I D GPGI + + + Sbjct: 680 DPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFER 739 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 F Q + A G GLGL I +SI+A HGG+ S +G LP V Sbjct: 740 FQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTKAVA 794 >gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 616 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 +AE N KS FLA+MSHE+RTPLNAILGFS +I N E +Y + ++ Sbjct: 248 KAERSNQLKSAFLANMSHEIRTPLNAILGFSRIIAET----ENAEERLQYYDIVEKNNMR 303 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LINEILDLS+IE+G E + + +SL + + R + +E+ + Sbjct: 304 LQELINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRC-QPGVELVFEESDPSLV 362 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGRGQYISIKDNGPGIAEGEIPT 419 + D + QV NL+ NA KFTA G ++ G+ + + D G GI++ +I Sbjct: 363 ISTDRNRLFQVFSNLIGNATKFTAKGS---ISFGYKLKEKEIVFHVADTGSGISDDKIDK 419 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + QG GLGL I++ I+ GG+ ++SK+ G LP Sbjct: 420 IFDRFIMA----NNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 956 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 6/265 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + L E+ E E + R+ A+E N K FLA++SHELRTPL A+LG+ Sbjct: 540 IGSLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWV 599 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ G L + + + R+ + LI ++LD+SRI +G+ L + + + Sbjct: 600 QMLRT---GNLPAGKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVV 656 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 V + ++ A K+I + +D + S V D + ++QV+ NLLSNAVKFT GGRV V Sbjct: 657 VEHALESVRPAADAKHIRLQAAVDST-SHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQV 715 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 V I++ D G GIA +P V F Q + + G+GLGL I + ++ Sbjct: 716 FVERR-DSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVEL 774 Query: 452 HGGQFLIRSK-LREGVEVIAILPNT 475 HGG S+ +G LP + Sbjct: 775 HGGTVSAFSEGEGKGATFTVTLPMS 799 >gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112] gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112] Length = 595 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 10/237 (4%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +F++++SHELRTPL ++ + E + N +++ + ++ +IN++L Sbjct: 356 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 413 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363 LSR++ G ++ ++L D V + + + I +++ V Sbjct: 414 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 473 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QVI N+++NA+K++ G + V + + +SI D G GI ++ + Sbjct: 474 DTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 532 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 533 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 589 >gi|187919553|ref|YP_001888584.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187717991|gb|ACD19214.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 655 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 175/454 (38%), Gaps = 27/454 (5%) Query: 24 GLEYPSKMDFDREIIT-LHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS---LIT 79 P + D +++ L+ + +LV+ P+F Sbjct: 1 MRADPIQRAIDEDLVRVLYAQDPIAFFSHWFSIAVLVSIYWPNIPSPPLFIACFGFYAAA 60 Query: 80 LAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV--GQIAIGLCWTLLTLVEPGTWTPEYL 137 A + ++ ++ W I V + G + +P+ Sbjct: 61 NCASLALWLVNRRY----PQLVSPRGWIILHAVRGMLLYSGPGIAVWFAF----QSPQSD 112 Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 +L+ L+ + F + P ++ S H D +L ++ Sbjct: 113 LPLLHTVMLVTLAAGVFMSNGFDLLNFSTSIPFLLFPSIVMHFGTHTFDRTLLAIVLAFF 172 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + ++ + + +AE A+ ++ AEE +LAK+RF A+ S Sbjct: 173 FCAINVYALSYRKLFQQVVQARVDQQYLAESLAAQ------KRVAEEASLAKTRFFAAAS 226 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 H+LR PL+AI + + P+ + E+ I + + L L N++LDL+R+E+G Sbjct: 227 HDLRQPLHAIGLLAASLNDTAATPVQHAKTAEH---IVYNVEALNQLFNQVLDLARLESG 283 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 ++ L ++ + +A K + + P+ V D + +V+ NLLS Sbjct: 284 VTQVIRLHFRLSELFERVGSQYRPQAAAKGLALRI--APTAMVVHDDPVLLERVLSNLLS 341 Query: 378 NAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 NAV++T G + + + + G +I ++D+G GI E + F Q + + A Q Sbjct: 342 NAVRYT-EDGAIWLGLRRAGRQTGGFIEVRDSGIGIPAEEHARIFEEFYQVANPQRDARQ 400 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G GLGLP + ++ GG+ +RS G Sbjct: 401 GHGLGLPTVKRLVEMLGGELQLRSAPGRGSVFRF 434 >gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 556 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + FLA MSHE+RTP+N ++G +++ + +EY I RS L+ +IN+IL Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLLMETELQS----DQQEYADIIRRSADALVAVINDIL 225 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGM 368 D +++E+G+ E+ E L+ ++E + + KN+E+ +D + V + D + Sbjct: 226 DFTKLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRL 285 Query: 369 RQVILNLLSNAVKFTAIGGR-VHVTVGWTSGRG--QYISIKDNGPGIAEGEIPTVLTSFG 425 RQV++NL+SNAVKFT GG V +V S G S+KD G GI ++ + F Sbjct: 286 RQVLINLVSNAVKFTDQGGVYVFASVKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFS 345 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 Q ++ G GLGL I ++++ GG + +GV Sbjct: 346 QLDSSMTRKYGGTGLGLAICKTLVNMMGGDIRVDMSGEQGVTFHFT 391 >gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum aromaticum EbN1] gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase and response regulator domains [Aromatoleum aromaticum EbN1] Length = 1015 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 5/275 (1%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E+ ELE R AE N AK FLA +SHELR+PLNA+ G+S+V+ Sbjct: 601 TERKRAQRELEQLLVAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVL--TA 658 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 G T I R+ H LI+++LD SRI +G+ EL+ ++L++IV I + Sbjct: 659 SGNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAIDL 718 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 A+ K IE+ + D ++Q+++NLL+NA+KFT GG V + + Sbjct: 719 SWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINLLANALKFTPEGGWVELRLAQ-GE 777 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +S+ D+G GI G +P V F Q ++ QG+G+GL + ++++ HGG + Sbjct: 778 TSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLVELHGGAVRV 837 Query: 459 RSK-LREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 S G LP V + +P ++ E+ + + Sbjct: 838 ESAGPGCGSVFTVELPR-PVQDALPGESPEAREGR 871 >gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 870 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 7/249 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + R +A + + KS FLA+MSHE+RTPLNAI+GFS+++ + Sbjct: 625 IQRYKTTEEQLTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSG--FTE 682 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K +I I+++ LL LIN+ILDLSRIE+G + + +L +++ QL Sbjct: 683 EEVKLFIETINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMP 742 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + S + D ++QV+ NL++NA KFT G + I Sbjct: 743 SGVRLVLKLPENSKKYLVTDNVRLQQVVNNLINNAAKFTTQ-GSITFGYTEEEPGYTSIF 801 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 ++D G GI+E + + F + S QG GLGL I Q+I+ G + SK + Sbjct: 802 VEDTGKGISEDGLRHIFERFYKVD----SFTQGAGLGLSICQTIIGRLNGVITVTSKEGK 857 Query: 465 GVEVIAILP 473 G LP Sbjct: 858 GTRFTVRLP 866 >gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 482 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 155/330 (46%), Gaps = 14/330 (4%) Query: 164 FLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 L+ + +A+S + + + I LA + ++ ++ + + + + Sbjct: 164 LLNLTFMSIAVSAAVLAIVTLFSIGLANSIVKPINNIRAVSAQMARGKFDARIKGNYRYE 223 Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L +++E + N K F++S+SHELRTPL I G+SE + P Sbjct: 224 LGELAATLNYMAEEIVR----SNQIKDDFISSISHELRTPLTGIKGWSETLTSGGFDP-- 277 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E K IG I + L+ L+ EILD S++++ +L ++L ++++E ++ + +A Sbjct: 278 -EETKIGIGIIAKETDRLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKA 336 Query: 344 QEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 ++K+I++ + V D ++QV LN++ NA+KF+ +H+ + Sbjct: 337 EQKHIQLKLEDKTDGTAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVK 396 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 + + D+G GI+E + V F Q G GLGL I+Q ++ H G+ I+S+L Sbjct: 397 VDVIDSGIGISEEYLKKVKDRFFQV----NHQGGGTGLGLAISQQLVELHHGEMEIQSEL 452 Query: 463 REGVEVIAILPNTRVLNFIPEDNHESTQYK 492 G V ILP + + E+ T+ K Sbjct: 453 GVGTTVSVILPL--LSDTQREEAAAETETK 480 >gi|153871895|ref|ZP_02000948.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152071640|gb|EDN69053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 490 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 148/264 (56%), Gaps = 17/264 (6%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 AK + R++AE + +KS FL++MSHELRTPLN ILG++++++ ++ Sbjct: 7 RAKDRATAAREQAEAASRSKSEFLSNMSHELRTPLNGILGYAQILKRN---KKLTTMQRD 63 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I SG+HLL LIN+ILD+S+IEAG+ EL +++L + + ++++RA+EKN+ Sbjct: 64 GLNVIDSSGRHLLTLINDILDMSKIEAGKMELYACSLNLQNFLDNIGGVIRMRAEEKNVF 123 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---------R 399 ++ L V DEK +RQ+++NLL NAVKFT G+V + V + Sbjct: 124 FKFEMPIPLPIGVSVDEKRLRQILINLLGNAVKFTQQ-GQVILRVTPLGSPQIKDDLQQQ 182 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++D G G+ + E+ + +F Q K + G GLGL I++ ++ G Q +++ Sbjct: 183 LIRFEVEDEGIGMTQEELGKIFLAFEQVGD-EKMRQAGTGLGLAISKRLVELMGSQLVVK 241 Query: 460 SKLREGV--EVIAILPNTRVLNFI 481 S+ +G + +LP V + I Sbjct: 242 SEKNKGSNFQFEIMLPLVEVADQI 265 >gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 858 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 18/308 (5%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P+++AL + + L+F ++ + + + D L Sbjct: 277 TLPLIIALGMAPEDFLKGWKRKAWIYFISWLAFGAALSILIRLAQRRSRVIDKLNDQLAE 336 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 ++ AK+ + AKS FLA+MSHE+RTP+NAI+G + ++ + + P E Sbjct: 337 QVSQAKA-----------ASQAKSNFLANMSHEIRTPMNAIIGLTHMLRRDKVTPAQGEK 385 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + I + HLL++IN+ILDLS+IEAG+ EL S ++++ ++ LRAQ K Sbjct: 386 ----LIRIAGAADHLLSVINDILDLSKIEAGKVELEAENFSPEEMLQRICSIVLLRAQAK 441 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH---VTVGWTSGRGQYI 403 IE+ + + D + Q +LN LSNAVKFT G + V Sbjct: 442 GIELVVDAGELPALLNGDVTRLGQALLNYLSNAVKFTEKGSIILRGNVLKETEKDVLVRF 501 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D+G GI+ ++ + T+F Q S +I G GLGL I++ I GG+ S Sbjct: 502 EVEDSGIGISPEKLAHLFTAFEQASASISRHYGGTGLGLAISRHIAMLMGGEAGASSTPG 561 Query: 464 EGVEVIAI 471 +G Sbjct: 562 KGSIFWLT 569 >gi|227015847|gb|ACP17944.1| putative multi-sensor hybrid histidine kinase [Pseudomonas nitroreducens] Length = 1215 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 8/266 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E E + +AEE N AKS FLA+MSHE+RTP+NA++G E+ + Sbjct: 693 VTERERLHHQLQAAKDQAEEANRAKSTFLATMSHEIRTPMNAVIGMLELALTRSGQGHWE 752 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +E + + S + LL LI +ILD+++IE+GR L L ++V + A+ Sbjct: 753 ---REPVEVAYDSAKSLLTLIGDILDVAKIESGRLTLMPERARLRELVESIARVFDGLAR 809 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQY 402 +K +E+ +I+ + V D ++Q++ NL+SNA+KFT G R+ V G Sbjct: 810 QKGLELKVEIEADAACEVLIDPLRLKQILSNLVSNAIKFTDKGQVRIQVGGERLVGGRIA 869 Query: 403 --ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 ++++D+G GI+ + + F Q S ++ G GLGL I + + GG + S Sbjct: 870 LNVAVEDSGIGISTSDQAQLFEPFSQASQNSHASRGGTGLGLTICRKLAEMMGGSVCLES 929 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNH 486 +L G V L +VL +PE+ Sbjct: 930 QLGYGTRVSVSL-LLQVLEPLPEEAP 954 >gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata D2] gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata D2] Length = 1106 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 +MSHE+RTP+NAI+GFS+++ + ++ +++ I RS + LL+L+N++LD +++ Sbjct: 544 NMSHEIRTPMNAIIGFSDILLDTAL----DKEQLKHLSTISRSAKSLLHLLNDVLDSAKL 599 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVIL 373 + G+ EL SL D + + L L+A+++N+ + I P ++ + +RQ++ Sbjct: 600 DKGKLELENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILT 659 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NL+ NAVKFTA G+V V + ++ + I D G G++ ++ V +F Q ++ Sbjct: 660 NLIGNAVKFTAQ-GKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSR 718 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE 483 G GLG I++ ++ GG+ + S+L +G LP ++ PE Sbjct: 719 KYGGTGLGTTISKQLVELMGGEIEVESELGKGSIFRFTLPMQ--ISQQPE 766 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + ++RAE + AK+ F +++SHE RTPL +L E + + PL+ T ++ + Sbjct: 336 EAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLS-PTQRDRLE 394 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 R+ LL L+N +LD SRIEAGR + + + +E + + + + Sbjct: 395 IAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLIV 454 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 P SV+ D++ +++LNLLSNA K+T G + V V +S+ D G GI Sbjct: 455 NCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLA-GSITVKVQGF-DDHIELSVIDTGIGI 512 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++P + F + A + +G G+GL + Q ++ HGGQ + S L +G L Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTICL 572 Query: 473 PNTRVLNFIPEDN 485 P R N +P +N Sbjct: 573 P--RGCNHLPHEN 583 >gi|254427119|ref|ZP_05040826.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196193288|gb|EDX88247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 1118 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 168/375 (44%), Gaps = 12/375 (3%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + + + + LLI +++ A+ PV A + Sbjct: 548 VGGFLPAALISQLRSRLGHFLGLLITITLIMSG----LLALVYYQIPVSDAFVQTLMADT 603 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKR 241 ++ +++ +++ + + + Q + I E ++ Sbjct: 604 LTKVFAILIIISGVIAWLFVLAHESRVVAQEESRRQTRMLMEEIKAHEKTDLALQAAKEL 663 Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE N AKSR+L +SHELR+PLNA G+++++E P E ++ IG I RS +HL Sbjct: 664 AEAANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ---DPSIPENRRDAIGAIRRSTEHL 720 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-S 360 +LI +L++S+IEAGR EL + + + +++ E + M QL+A EK I + + Sbjct: 721 SDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMFQLQAAEKGIGFEFRSKSQMPTW 780 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V DEK +RQ+++NLLSNA+KFT G V +T + + I D G GI E ++ + Sbjct: 781 VTTDEKRLRQILINLLSNAIKFTRE-GLVTLTFRYR-NQVAEFVIADTGVGIDEEDLKRI 838 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + + G GLGL I Q + GG + S +G E + +R+ + Sbjct: 839 FRPFERVRKPGIPSVHGTGLGLTITQLLADIMGGDIQVSSVPGQGSEFRLSVMLSRLSSP 898 Query: 481 IPEDNHESTQYKCYA 495 P E YA Sbjct: 899 AP-ARQERQPVAGYA 912 >gi|39934324|ref|NP_946600.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648172|emb|CAE26692.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1122 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 163/338 (48%), Gaps = 8/338 (2%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 L ++S + + ++L A + + L +L ++ +S+ + Sbjct: 570 LTVFAVSVGLIGLSLFLIYLQVATANEAQQIELAEILWKLFFALT-IIVGVVSWLFVLAR 628 Query: 206 HLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 ++ Q + I + ++ AE NLAKSR++ +SHELR+PL Sbjct: 629 LSRQAAEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPL 688 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAI G+++++E + P ++ I + RS HL LI+ +LD+S+IEAGR LS Sbjct: 689 NAISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRD 745 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFT 383 + + + + + M +L+A K+IE K L V+ADEK +RQV++NLLSNA+KFT Sbjct: 746 EVRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFT 805 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VH V + + + ++D GPGI ++ + F +G++ G GLGL Sbjct: 806 QE-GSVHFIVHYRNP-VAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLT 863 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 I++ + GG + S +G L + V N Sbjct: 864 ISKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNPT 901 >gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1117 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 + FL++MSHE+RTP+N ILG ++ + + I I +G LL L+N+IL Sbjct: 740 TEFLSTMSHEIRTPMNTILGMAQALS----AADLPPKQTQAIRAIEIAGGSLLTLLNDIL 795 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGM 368 DLS+IE+G + E + + + M++ A K+I + + L V + Sbjct: 796 DLSQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRI 855 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSG----RGQYISIKDNGPGIAEGEIPTVLTSF 424 RQV++NLL NAVKFT G + + VG +G + ++D G GI ++P + F Sbjct: 856 RQVLVNLLGNAVKFTHQ-GSIVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRF 914 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 Q GVGLGL I++ ++ GG + + + +G LP V +P+D Sbjct: 915 TQADATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLPLRPVHTPVPQD 974 Query: 485 N 485 Sbjct: 975 A 975 >gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 485 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 101/431 (23%), Positives = 177/431 (41%), Gaps = 30/431 (6%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ-----IAIGLCWTLLTLVEPG 130 L+ + + G ++ + I V I IG+ L L Sbjct: 48 VLMMIFSGWICIKFGFRLNDDVRFDLRAVPLIIAAFVYSQPLTLIVIGVGIGLARLTFGL 107 Query: 131 TWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ------------- 177 + + + + ++ ++V Sbjct: 108 SDAAMAGLLNLTILGFVCAGLNLWMRRTSYRFAIKGIVTILVVNVINSLNLAVIGVVPPK 167 Query: 178 -AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD 236 ++ + + + L+ +L+ + + N+++ EL+ AK + Sbjct: 168 HYLLDIMPIALPLSILLSLGFALILRDFQLGARQNLELKYANELLRKQADELQKAKIGLE 227 Query: 237 ETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 + ++ E + KS FLA+MSHELRTPLN+I+ +E+I +E EY IH+ Sbjct: 228 DRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAESD---EASEEISEYGRIIHK 284 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 SG+ LL +IN+ILDLS++EAGR E++ + L +I + + A +K I +++ Sbjct: 285 SGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQKKIAFTTRLEE 344 Query: 357 SLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT------SGRGQYISIKDNG 409 SL S+ +D + + Q++ NLLSNA KFT G V + + G ++ D G Sbjct: 345 SLPDSIISDPQRIAQILRNLLSNAFKFTHE-GHVELDIRRAPAKGTAEGEWLVFTVSDTG 403 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G+AE + V +F Q +I G GLGL I+ ++ GG + SK +G Sbjct: 404 IGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRMESKEGQGSTFS 463 Query: 470 AILPNTRVLNF 480 LP + Sbjct: 464 FYLPLKPARSH 474 >gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia pyrifoliae Ep1/96] gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96] gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC [Erwinia pyrifoliae DSM 12163] Length = 992 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 9/258 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 493 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 548 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ +K + Sbjct: 549 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRLT 608 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ ID + + D ++QVI NLL+NA+KFT GG + + G ++D+ Sbjct: 609 LWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 666 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + +M G + S+ G + Sbjct: 667 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 726 Query: 469 IAILPN--TRVLNFIPED 484 I +P +RV+ P D Sbjct: 727 IVRIPLYNSRVVTLEPRD 744 >gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora ATCC BAA-2158] Length = 987 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 9/258 (3%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 484 KMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAD----S 539 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ + S +++ A +K + Sbjct: 540 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLAMAVKKRLT 599 Query: 350 IFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ ID + + D ++QVI NLL+NA+KFT GG + + G ++D+ Sbjct: 600 LWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDYLAFRVRDS 657 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI EI + F Q ++ QG GLGL I + +M G + S+ G + Sbjct: 658 GVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQF 717 Query: 469 IAILPN--TRVLNFIPED 484 I +P +RV+ P D Sbjct: 718 IIRIPLYNSRVVTLEPRD 735 >gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 6/250 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 E E + + R AE + K F+A++SHELRTPLNAI+G+++++ + P Sbjct: 283 AQEREHLLANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQLLLRDASDPARV 342 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + IHR+ + +I+++LD+SRI AG+ L+ + L+D++ + I +QL A Sbjct: 343 EKG---LQVIHRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAAD 399 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K + + + + + V D ++Q+I NLL+NA+KFT GRV VT+ + + Sbjct: 400 AKELRVMPVL-GAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLT-SGDGEARLV 457 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LR 463 + D G GI E +P V F Q + G+GLGL I + ++ HGG S + Sbjct: 458 VSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGEQ 517 Query: 464 EGVEVIAILP 473 G LP Sbjct: 518 RGATFTVTLP 527 >gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 252 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE--TYKEYIGDIHRSGQHLLNLI 305 AKS FLA MSHELRTPLNAILGF++++E E N +KE++ I RSG+HLL LI Sbjct: 1 AKSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELI 60 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWAD 364 N++L++S+IEAGR L+ + +LI ++ ML+L A K + + ID + + ++AD Sbjct: 61 NDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYAD 120 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRV-HVTVGW--TSGRGQYISIKDNGPGIAEGEIPTVL 421 E+ +RQ + NLL NA+KFT GG + V +G ++D GPGI E+ + Sbjct: 121 EQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLF 180 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 F Q S QG GLGL I Q + GG+ + S+ +G Sbjct: 181 EPFSQTETGRNSQ-QGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 228 >gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 1111 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + + Sbjct: 315 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + + +S + + +++ ELE L + Sbjct: 375 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 431 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 490 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 550 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 551 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 608 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 668 -----EEEIQATQ 675 >gi|78048722|ref|YP_364897.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037152|emb|CAJ24897.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1200 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ + Y I R+G Sbjct: 825 QEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDL----KQRSYTESIRRAG 880 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 881 AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 940 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 941 DITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 999 Query: 417 IPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GGQ + S+L G + LP Sbjct: 1000 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLPLR 1059 Query: 476 RVLN 479 V + Sbjct: 1060 WVAS 1063 >gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1558 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 146/342 (42%), Gaps = 9/342 (2%) Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL----DISLAGMLATALS 198 T + ++ +A + + A F ++ ++ + + + ++ Sbjct: 1076 LTATVPIAETARTGEAIFLANIEEFAAKYPQIANVPSLTGNCAFACIPLIVEQQTIGVMA 1135 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 + K + ++ R AE N K FLA +SH Sbjct: 1136 LSFATAQKFNEEQQKFMLTLGQQCAQAIARSQLYEAEKNARAIAESTNRIKDEFLAVLSH 1195 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN I+G+++++ T ET K+ + I R+ + LI+++LD+SRI G+ Sbjct: 1196 ELRTPLNPIMGWAKLLRTRTYK---EETIKQGLETIERNAKLQTQLIDDLLDVSRILRGK 1252 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSN 378 L+ + L + V+ + ++L A+ K+IEI + V D ++QVI NL+SN Sbjct: 1253 LNLNVCLVDLRNTVQAGLETVRLAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLVSN 1312 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV 438 AVKFT GRV V + Q I + D G GI +P V F Q G+ Sbjct: 1313 AVKFTPSEGRVDVRLEQVGRDAQ-IQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGL 1371 Query: 439 GLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLN 479 GLGL I ++ HGG + S +G LP + + Sbjct: 1372 GLGLAIVHHLVELHGGTVVAESAGEDQGATFTVKLPLHKSAD 1413 >gi|150008612|ref|YP_001303355.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937036|gb|ABR43733.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 638 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + ++ + + F + ++ + + QA+K L+ Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISI 405 IE +K + ++ D++ + Q + N+L NA+KFT+ G + + + T+ + + + Sbjct: 515 GIEFKEKCPDTPICLYTDKERLYQALENILKNAIKFTSA-GFIEIGYEYSTNAQDVRLYV 573 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLKSEKNKG 629 Query: 466 VEVIAIL 472 + + Sbjct: 630 CRISLVF 636 >gi|312890080|ref|ZP_07749624.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297612|gb|EFQ74737.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 352 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 63/345 (18%), Positives = 143/345 (41%), Gaps = 10/345 (2%) Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 + L ++ N+ + + + + I ++++ + + Sbjct: 5 VLVLINALAVAITISIVNYYFRHNWYDVMITFSASFVSSFIFIYYLIEKYIVAKIKIIYK 64 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE---NLAKSRFLAS 255 + L K + D + + K + + + E+ + FL++ Sbjct: 65 LIHNL--KLGKDLKDAIGDHVTSDPINDVEKDVKEWAKQKKSEIEDLKKQEQFRRDFLSN 122 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHE +TPL AI G+ E ++ + P+ K+++ ++ L L+ ++ ++S++E Sbjct: 123 VSHEFKTPLFAIQGYIEALQDDMDDPV---MVKQFLEKASKNVDRLSYLVKDLDEISKLE 179 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILN 374 +G ++ + D+++E + L+++A + I++ V AD + +RQV++N Sbjct: 180 SGEIPINYVKFKINDLIKEVMESLEMKAVQHKIKLSYKDKYDEPILVTADREKIRQVLVN 239 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ N+ K+ G + + + + + D+G GI E +P + F + + Sbjct: 240 LIDNSFKYGKENGNTSIRL-YDLHDQVLVEVTDDGIGIEEKYLPRLFERFFRTDSSRSRQ 298 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL I + I+ +H +RS G L R + Sbjct: 299 IGGSGLGLAIVKHIIESHQQTINVRSTEGLGSTFGFTLQKARQMP 343 >gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2] gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 476 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 17/322 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF-------KSNVKILSCQAEKDDLIA 226 L + S+ ++ L + + I + + + + D Sbjct: 161 LFIITLFSVGIMAAVLIIVFVVSTGLANSIVRPINNIRDVSAQMAQGRFDARIKGDYRYE 220 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E+A +L+ ++ N K F++S+SHELRTPL +I G+SE + P E Sbjct: 221 LGELASTLNYMAQEIV-RTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP---EE 276 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 K + I + L+ L+ EILD S++E +L + L ++++E ++ + +A+ K Sbjct: 277 TKIGMQIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 336 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 I++ + + V D ++QV LN++ NA+KF+ +++++ G IS++ Sbjct: 337 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRVKGN-IEISVQ 395 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI+E + V F Q G GLGL I+Q + H GQ LIRS+L G Sbjct: 396 DTGIGISEENLARVRDRFFQVDH----QNGGTGLGLAISQQFVERHHGQMLIRSELGAGT 451 Query: 467 EVIAILPNTRVLNFI-PEDNHE 487 + LP + + P E Sbjct: 452 TITVSLPALQAEPSVEPPQLSE 473 >gi|168187447|ref|ZP_02622082.1| two-component sensor histidine kinase [Clostridium botulinum C str. Eklund] gi|169294655|gb|EDS76788.1| two-component sensor histidine kinase [Clostridium botulinum C str. Eklund] Length = 779 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 4/249 (1%) Query: 235 SDETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++E +K +E +++F A++SHEL+TPLN IL + ++ + +Y Sbjct: 506 AEENKKLLDEALSYQQLRTKFFANISHELKTPLNLILSAIQFLQSVNGDSSLRTNFNKYG 565 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I + ++ +IN ILD+++I++G +E+ +++++V + + KN+E Sbjct: 566 DVIKENSYRMVRIINNILDITKIDSGYFEIHPENYNIVEVVEDICLYSSSYINSKNLEFI 625 Query: 352 QKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 D + D + ++ILNLLSNA+KFT GG++ V + + G ISIKD G G Sbjct: 626 FDTDTEEKIIACDPHLIERIILNLLSNAIKFTNAGGKITVNM-YDKGDFIDISIKDTGIG 684 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + F Q ++ ++G G+GL + +S + H G + SK+ G E I Sbjct: 685 IPKNHQKIIFERFVQIDKSLSRNQEGSGVGLSLVKSFVDLHNGFIKLNSKVGHGSEFIIT 744 Query: 472 LPNTRVLNF 480 LP+ + + Sbjct: 745 LPSVTIKDS 753 >gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 518 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 4/234 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 + + F+A++SHEL+TP+ +I GF+E + M + E + ++ I + + Sbjct: 286 ELKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAM--KDEEALEHFLTIILKESER 343 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ E+LDLS+IE ++L + + +++ E + + +A+EK I++ + P L Sbjct: 344 LQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLV- 402 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + D ++Q+++NLL+NA+ +T G+V + I +KD G GI E EIP + Sbjct: 403 IRGDRNRLKQILINLLANALAYTPEHGQVA-VEAEEKEKEVLIHVKDTGIGIEEKEIPRI 461 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F + A G GLGL I + ++ H G + S++ G P Sbjct: 462 FERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 515 >gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis NCTC 9343] gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis 638R] Length = 522 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 11/252 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E++ + R +AEE + KS FLA+MSHE+RTPLNAI+GFS++I N Sbjct: 282 VTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADNE 337 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ++Y + + LLNL N+ILDLS +EAG ELS + L DI + L +++ Sbjct: 338 CEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYE-LHVKSV 396 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 + + + S + D + + QV++NL++NA+KFT++ G +H + Sbjct: 397 KPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSV-GEIHFGFQKKAD-MVQFY 454 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GI + T+ FG+ QG GLGL I + ++ GG+ +RSK E Sbjct: 455 MSDTGKGIPAERVATIFQRFGKIDD----FVQGTGLGLTICRMLVEKMGGRIWVRSKQGE 510 Query: 465 GVEVIAILPNTR 476 G LP + Sbjct: 511 GTVFYFTLPMAK 522 >gi|228984474|ref|ZP_04144651.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775177|gb|EEM23566.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 466 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWVGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKICISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGAIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 590 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 5/233 (2%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + + F+A++SHELRTPL+ + G++E + + + + +E IH + Sbjct: 350 RLDRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMRRELTEIIHDETLRMKR 407 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-EKNIEIFQKIDPSLSSVW 362 L+N++L+L+++E+G+++L + + L ++R Q A E ++ I V Sbjct: 408 LVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLTFEVSIPDHPVMVD 467 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE + QV NLL NA + TA G + + Y+ + D G GI E ++P + Sbjct: 468 GDEDRLEQVFTNLLDNAFRHTAQ-GTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFE 525 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A + G GLGL IA+ ++ H G+ L+ S L EG +LP Sbjct: 526 RFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESHLGEGTTFTVVLPLA 578 >gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290] gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290] Length = 617 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 8/243 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + + +F++++SHELRTPL ++ + E + + + +++ ++ Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALHDGAW--KDPKLAPKFLKVTQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357 +IN++L LSR+++G ++ +++ ++ + + ++ I + Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKR 489 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D QV+ NL++NA+K++ GG + + T +S+ D G GI +I Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 P + F + A + G GLGL I++ ++ GQ S +G LP + Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALPYEPL 608 Query: 478 LNF 480 Sbjct: 609 EEE 611 >gi|218709447|ref|YP_002417068.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] gi|218322466|emb|CAV18619.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] Length = 574 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 8/286 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + + K+ L A + + RK AE N AKS FLA MSHELRTPL Sbjct: 166 NRFRPLIERAVFDIENKEKLEATVRERTAELVAARKDAERANKAKSEFLAMMSHELRTPL 225 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NA +G + ++ + N+ + + ++ S + LL +I+++LD S+IE+G + L+ Sbjct: 226 NATIGLIDTLKSTPL----NDEQQSILLNMSTSSELLLAIISDVLDFSKIESGCFSLAPQ 281 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + D V + + A +K + + D P + D + Q++ NL+ NA+KFT Sbjct: 282 WSNARDTVTFVLSEQKKIADDKGLSLTLTSDIPEGELHYIDPSRLAQILFNLIGNAIKFT 341 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 G VHV++ + IS++D G GI+ ++ ++ + F Q I G GLGL Sbjct: 342 -EHGHVHVSITYQHSSF-RISVEDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLA 399 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAILP-NTRVLNFIPEDNHES 488 I + ++ G + S+ +G + LP TRV N + Sbjct: 400 ITKRLVELMRGHISVESEPGKGSKFEVRLPVLTRVTNNQDHAAEDK 445 >gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] Length = 377 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 3/259 (1%) Query: 215 LSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + E L EL + + +E + KS F++ +SHELRTPL I + E+ Sbjct: 114 IEDITEMTRLEEELRDSYIKLENAYAELKELDSIKSEFVSMVSHELRTPLTVINSYIEMF 173 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E +G L + KE + I ++ L+N++LD+ RI + R L + S+ +++R Sbjct: 174 EDGMLGDLTD-VQKEKLQLIRSQTDTMIQLVNDMLDILRIGSRRLRLKKELSSMEELIRS 232 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 I L A K I + + + + + D K + QV+ NLL+NA+K+T G++ V +G Sbjct: 233 VIASLSRLAALKEHTITFRCERANTLIECDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLG 292 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + +SI+DNG GI E + + F KSA+ G+GLGL I + I+ HGG Sbjct: 293 GDAEN-VLVSIRDNGIGIREEDKDRIFEKFF-VMSNEKSADIGMGLGLSITKDIVEAHGG 350 Query: 455 QFLIRSKLREGVEVIAILP 473 + S+ EG LP Sbjct: 351 RIWFESRFGEGSTFYFTLP 369 >gi|332307241|ref|YP_004435092.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174570|gb|AEE23824.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 720 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 12/276 (4%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D ++ L+ A ++E ++A E N AKS FLASMSHELRTP+N + G E+ Sbjct: 205 RDALSSLKDAIQKAEEAEQQAVEANKAKSEFLASMSHELRTPMNGLFGMMELALDNPHKS 264 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 EY+ SG+ LL LIN++LDLS+IEAG+ + +++ L+ ++ + + Sbjct: 265 G------EYLKKAKNSGKQLLVLINDVLDLSKIEAGKLRIERTSLDLLQLLDDVTSVQSA 318 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A+ K + + +L ++ D + Q++ NLLSNA+KFT G V++ VG Sbjct: 319 NARLKKLNFNYNKNTTLPSHIFGDPTRIAQIMHNLLSNAIKFTHQ-GEVNLDVGVQVKDK 377 Query: 401 QY---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 ++ IS++D G GI ++ ++ F Q + G GLGL IA+ + G Sbjct: 378 RFWLNISVQDTGIGIKPEKLKSIFNKFEQADHSTTRLHGGTGLGLSIAKQLTELMHGTLT 437 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKC 493 +S EG + LP V N E+ H S C Sbjct: 438 AQSTENEGSCFVLTLPIE-VDNKRIENIHPSIPLHC 472 >gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253] Length = 949 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT I G + + + G I ++D Sbjct: 567 LYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLAR-DGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TIRIPL 690 >gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1111 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + + Sbjct: 315 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 374 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + + +S + + +++ ELE L + Sbjct: 375 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 431 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 432 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 490 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 491 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 550 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 551 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 608 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 609 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 667 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 668 -----EEEIQATQ 675 >gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 586 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 6/237 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHELRTPL + G++E + + E K+Y+ I L L+N++ Sbjct: 354 RREFVANVSHELRTPLTYLQGYTEALIDGMV--KQPEEKKKYLNIILEETLRLRRLVNDL 411 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LDLS +E G L + ISL ++ I + A++K + I ++ L ++ADE M Sbjct: 412 LDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVNITAEL-KELPLIYADEDRM 470 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QV++NL+ NA+++T GG + + + +KD GPGI E E+P + F + Sbjct: 471 EQVLINLIDNALRYTENGGEIIIEASA-GTESVTVCVKDRGPGIPEDELPFIWERFYKVD 529 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN--FIPE 483 A G G+GL I ++I+ HGG+ ++ G +P + L+ +PE Sbjct: 530 KARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFCFNIPFGKRLDNKALPE 586 >gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2] gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W] gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W] gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2] Length = 588 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|192289852|ref|YP_001990457.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192283601|gb|ACE99981.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1122 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 8/337 (2%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + A+S+ + + + ++ + I+ +++ + + L ++ Sbjct: 572 VFAVSVGLIGLSLFLIYLQVATANEAQQIELAEILWKLFFAVTIIVGVVSWLFVLARLSR 631 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + I + ++ AE NLAKSR++ +SHELR+PLN Sbjct: 632 QA--AEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLN 689 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 AI G+++++E + P ++ I + RS HL LI+ +LD+S+IEAGR LS Sbjct: 690 AISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDE 746 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTA 384 + + + + + M +L+A K+IE K L V+ADEK +RQV++NLLSNA+KFT Sbjct: 747 VRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQ 806 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G VH V + + + ++D GPGI ++ + F +G++ G GLGL I Sbjct: 807 E-GSVHFIVHYRNP-VAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLTI 864 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 ++ + GG + S +G L + V N Sbjct: 865 SKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNPT 901 >gi|91223629|ref|ZP_01258894.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01] gi|91191715|gb|EAS77979.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01] Length = 584 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 6/251 (2%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I EL+ K K+AEE N AKS FLA+MSHE+RTP+N ++G ++++ + Sbjct: 188 HYITELKKTKLALQAAVKKAEESNHAKSMFLATMSHEIRTPMNGVIGMTQLLISD----N 243 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + +E++ + SG+HL+ +INEILD S++E G+ +LSE + ++ + + + Sbjct: 244 KDPKIREHLTTLLESGEHLMVIINEILDFSKLEQGKLDLSEEEFDINQLLIPIMNAFKPQ 303 Query: 343 AQEKNIEIFQKIDP--SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A +K+I++ + + D +RQ++ NL+ NA+KFT+ G V Sbjct: 304 ANDKSIQLVFDTKELANNLVLKGDIVRIRQIVFNLVGNAIKFTSDGMVKAVLKYDIKTEK 363 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GI + ++ F Q I G GLGL I + + GG + S Sbjct: 364 LSFQVSDTGIGIPTARLESIFNPFEQAEIRTMHDFGGTGLGLSIVKKLCLAMGGNVTVTS 423 Query: 461 KLREGVEVIAI 471 +L G A Sbjct: 424 ELGIGSCFTAT 434 >gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 679 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 6/233 (2%) Query: 242 AE-EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE E + KS ++++SHELRTPL++I GF+E++ + P E K Y+ IH + Sbjct: 442 AETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKLDP---ERNKRYLQTIHDESKR 498 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L +L+++ L++ R+E+G++ + LID VRE Q ++ +++ + Sbjct: 499 LTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTRFYQASTEQHRLQLDVDENHEFL- 557 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 + AD+ M+Q++ NLL NA+K++ GG V +++ + +S++D G GI +P + Sbjct: 558 IHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHNQ-IELSVRDFGLGIPSSAMPHL 616 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + + G GLGL I + I+ H G + S L EG +LP Sbjct: 617 FSKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLP 669 >gi|260587253|ref|ZP_05853166.1| two-component sensor histidine kinase [Blautia hansenii DSM 20583] gi|260542448|gb|EEX23017.1| two-component sensor histidine kinase [Blautia hansenii DSM 20583] Length = 446 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 143/316 (45%), Gaps = 11/316 (3%) Query: 161 YAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK----ILS 216 V + V + + + + I LA + + + +++ + Sbjct: 135 LRVAKTTDSVFHTMVSSFTLMGILFLIILALGFLLIERQTKKLIEPINRLDLEHPLKNVE 194 Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 + + L E K ++ + + ++ + F A++SHEL+TPL +I G++E+++ Sbjct: 195 YEELRPLLNRVDEQNKQIASQ-VEELKQAEAVRREFSANVSHELKTPLMSISGYAEIMKN 253 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + P + E+ G I+ L +L+ +I+++S+++ E+ + + +I ++ Sbjct: 254 GMVRPQD---ISEFAGRIYDEASRLTSLVQDIIEISKLDEKSGEMPFENVDIYEIAQDIC 310 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L L++++KNI + + S ++ + ++ NL+ NA+K+ GG V V++ T Sbjct: 311 QNLTLQSKKKNITLSI--EGSNVEIYGVRHILYEMCYNLVDNAMKYNREGGYVKVSLSTT 368 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 +++DNG GIA+ E + F + + G GLGL I + A H Q Sbjct: 369 EDH-VCFTVEDNGIGIAKEEQERIFERFYRVDKSHSRKTGGTGLGLSIVKHGAALHHAQI 427 Query: 457 LIRSKLREGVEVIAIL 472 + S+ +G ++ Sbjct: 428 TLNSEPEKGTKIQVFF 443 >gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1041 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 5/228 (2%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHE+RTP+NAILGF ++ + P + +++I H S + LL +IN++LD+ Sbjct: 450 FLANMSHEIRTPMNAILGFLAIVLESSSLPAD---LRKHIVTAHGSAESLLVIINDVLDV 506 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+ ++GR EL S L + + + L + AQEK + I D L D +RQ Sbjct: 507 SKFDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQ 566 Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 VI+NL++NA+KFT G + V ++ D G GI ++ + F Q Sbjct: 567 VIINLVANAIKFTEEGSITIEVKGTSGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADD 626 Query: 430 AIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + G GLGL I + I+ GG+ + S+ +G ++P R Sbjct: 627 SSTRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFMVPLPRA 674 >gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803] gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803] Length = 588 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] Length = 895 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 25/384 (6%) Query: 120 CWTLLTLVE-PGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 W +L + + LI + +AL F + ++ S + + + Sbjct: 158 GWVMLAVSRESMALQQQANAQVLLGVALIVVLAAALLAFRISGSI--SMPVLSLEKTVNE 215 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + S + + + + I + ++ + A + Sbjct: 216 LDSGRLSSRAEVAGPSETKALARGINRLARSVAQSQEQLATKVENSTRRVVTAMDALSKK 275 Query: 239 RKRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + E+ + AK FLA MSHELRTPL ++GFS ++ M N EY Sbjct: 276 NRALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVVGFSRLLNQSKM----NSKQVEYS 331 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 +I + + LL+ IN +LD S++++ + L + + + M +A+ +++ Sbjct: 332 DNITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHAYQAESTGLDLI 391 Query: 352 QKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGRGQYISIK 406 ID ++ + D ++Q++ NLLSNAVKFT G V + V G I + Sbjct: 392 LIIDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQ-GEVVLRVSLMKGENDDGSLSIEVI 450 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G G+ E + F Q I G GLGL I + + GG +I S L G Sbjct: 451 DSGIGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDIVINSDLGVGT 510 Query: 467 EVIAILP-----NTRVLNFIPEDN 485 + LP + V+ P + Sbjct: 511 CMTVTLPLLATDLSFVMPVRPPSD 534 >gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1043 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 4/238 (1%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E + K+ F++ +SHELRTPL +I G ++ + + E + ++ + L+ Sbjct: 792 EVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRK-DPEKADRMLDIALKNTERLVR 850 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 LIN+ILD+ +IE+G L+ + D++ + + A + + + ++A Sbjct: 851 LINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHSTRGI--LYA 908 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M Q + NLLSNA+KF+ V ++ G G I ++D G GI ++ T+ Sbjct: 909 DRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRR-GGGLLIRVRDQGRGIPSNKLQTIFER 967 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q + + G GLGL I +SI+ HGG + S +G E +LP + + Sbjct: 968 FQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFILLPRFQEEDAS 1025 >gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 559 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 162/364 (44%), Gaps = 44/364 (12%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 + + + + F + + + VL +L + + F Sbjct: 184 IGAERILGYQEAEIIGQPFELIFAPEAIERGQPQQVLKQALTEGFSRENRWHIRKDGTFF 243 Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE------------------NLAKS 250 ++ I + E +L ++ + +++ RK+AEEE N +K Sbjct: 244 WAHCLITPLRDENGNLRGFSKIMQDITE--RKQAEEEKEQLLLREQAARAEAEAANRSKD 301 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA +SHELRTP+ AI+G++ +++ G L+ + I R+ + LI ++LD Sbjct: 302 DFLAIVSHELRTPMTAIIGWAGMLQT---GALDEARASLALETIERNANLQMQLIEDLLD 358 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 +SRI G LS + L++++ + I ++Q A K I+I + D S+ +W D + Q Sbjct: 359 ISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGDSDRLLQ 418 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSG--------------------RGQYISIKDNGP 410 V+LNLL+NA+KFT GGR+ V + G I + D G Sbjct: 419 VVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQVIDTGQ 478 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVI 469 GI+ +P + F Q + + +G+GLGL IA+ ++ HGG +S+ + +G Sbjct: 479 GISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIGQGATFT 538 Query: 470 AILP 473 LP Sbjct: 539 VKLP 542 >gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2] gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2] Length = 484 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%) Query: 239 RKRAEE--ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHR 296 R EE +S F+A++SHE+RTPL+ + G+SE + G + E +E + IH Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG--SPEESEELVQVIHD 289 Query: 297 SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP 356 + L+ ++LDL+R+EAG ++ + + +++ +R++E+ + + Sbjct: 290 ESLRMGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPD 349 Query: 357 SLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGI 412 + ADE + QV+ NLL NA + T G +V + I IKD G GI Sbjct: 350 QHLLLPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGI 409 Query: 413 AEGEIPTVLTSFGQGSIAIKSAE-QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 A ++P + F + A E +G GLGL I ++I+ HGG S L EG E + Sbjct: 410 ASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAASVLGEGTEFTIL 469 Query: 472 LPNT 475 LP + Sbjct: 470 LPIS 473 >gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1846 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 9/270 (3%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVI 274 QAE + L E A ++ R+RAE E + K+ F +++SHE RTPL L + I Sbjct: 1157 QAEAERLQLIQEQA--AREQERQRAETLAELDRVKTLFFSNVSHEFRTPLTLSLAPLQDI 1214 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + PL+ E + +HR+ LL L+N +LD SRIEAGR E L E Sbjct: 1215 LSDPTHPLD-PVQGERLELVHRNNLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLAMFTTE 1273 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + + + ++++ P V+ D + +++LNLLSNA KFT G + V++ Sbjct: 1274 LTSVFRSAIERADLQLIVDCPPLPEPVFVDRQMWEKIVLNLLSNAFKFTFK-GEIRVSLA 1332 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 + + I+D G GIA +P + F Q +G G+GL + ++ H G Sbjct: 1333 NNNDNCAILQIQDTGTGIAPEHLPHLFERFYQVRGIQARTHEGSGIGLALVYELVRLHSG 1392 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPED 484 + S L EG LP +P D Sbjct: 1393 SIEVNSTLGEGTCFTISLPFG--TEHLPSD 1420 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 26/325 (8%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P + + + + +L +A + I L L +L++ Sbjct: 1526 MMPRLDGVELLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVS 1585 Query: 227 ELEVAKSLSDETRKRAEEEN------LAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + + R E + K L+++SHEL TPL AILG++ ++ Sbjct: 1586 ---RVNAHLQMAKLRGEALDHERMISRRKDELLSTVSHELNTPLVAILGWTRLLRGT--- 1639 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P + + + I R+ LI ++LD+SRI A + LS + + ++ I + Sbjct: 1640 PPSQPMLTKALETIERNAALQAKLIQDLLDISRINADKLLLSLEPVEIGSLIDIAISTVA 1699 Query: 341 LRAQEKNIEIFQ-----KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 A K I++ D S V D + + QV+ NLL+NA+KFT GRV V + Sbjct: 1700 PLASTKGIDLIWHKTNEDGDASSVVVKGDPERLVQVMGNLLTNAIKFTPPSGRVSVELSV 1759 Query: 396 ------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 G IS+ D G GIA +P V F QG + +G+GLGL I++ ++ Sbjct: 1760 MRDDNFADGGYAKISVIDTGIGIAAEFLPYVFERFRQGEG--TNGVKGLGLGLAISRHLI 1817 Query: 450 ANHGGQFLIRSK-LREGVEVIAILP 473 H G ++S+ + +G + LP Sbjct: 1818 QLHQGSIYVQSQGIGKGATFVIELP 1842 >gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 714 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 5/258 (1%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 +++ AE E+ R E K FLA +SHELRTPL AILG+S+++ Sbjct: 300 SDRKRTEAEREMLLCREQAARAELERTGRLKDEFLALLSHELRTPLTAILGWSQLLR--- 356 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + ++E +G I R+ + L++++LD+SRI GR L + L +++ + Sbjct: 357 LRGPSDEILGRALGTIERNARAQSKLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLES 416 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 + A+ K I + ++ + V D ++Q++ NL+SNA+KFT GG+V V++ G Sbjct: 417 AEPAAKAKGIRLELSVESAGEQVMGDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRR-EG 475 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 +++ D G GIA +P V F Q + G+GLGL I Q ++ HGG Sbjct: 476 TYARLAVSDTGIGIAPEFLPYVFEQFRQADASTTREYGGLGLGLSIVQHLVELHGGTVEA 535 Query: 459 RSK-LREGVEVIAILPNT 475 S +G LP + Sbjct: 536 SSAGKDQGASFTVKLPLS 553 >gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 1233 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 149/396 (37%), Gaps = 15/396 (3%) Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + + + + + + Y I S L +S+ Sbjct: 432 LQEIGSNDALDPADRLAKATDLTLEMTGLDVGAILKAVGDGRYQIIAASGVALPGVSVGY 491 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + + P+ L + + G + + F + Sbjct: 492 IVRAEADGRDDTTLLPINPPLHVPVTVDGRDAGLLSLGSTSGTVEFSDRQRDLAERIAHW 551 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 I + ++ L + + + SRFLA MSHE+RTP+N +LG + Sbjct: 552 IGIEVSRQEALDELRRAKEEAEAASEAK--------SRFLAMMSHEIRTPMNGVLGMIGL 603 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + I +S +LL ++N+ILD S++E+GR +L E L D++ Sbjct: 604 VLRSELTA----EQRSMITLAKQSADNLLMILNDILDFSKLESGRLDLEEVEFDLADVIS 659 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVT 392 +L +A+ K ++I ID ++ D +RQ+++NL+ NAVKFT G + + Sbjct: 660 SVAELLSPQAEAKGLDIISFIDTRMTLARLGDPGRLRQILINLVGNAVKFTGS-GSIVIR 718 Query: 393 VGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 + G + D G GI +P + F Q ++ G GLGL I + + Sbjct: 719 LEPADGDEVRFDVIDTGIGIPADTLPLLFQEFTQADSSVSRRFGGTGLGLAICERLTRLL 778 Query: 453 GGQFLIRSKLREGVEVIAILPNT-RVLNFIPEDNHE 487 GG + S G I+P + P + E Sbjct: 779 GGTISVTSTEGTGSTFSVIIPLPVSDEDAQPAADTE 814 >gi|114565156|ref|YP_752670.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114336449|gb|ABI73831.1| Hpt sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 782 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 19/356 (5%) Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 L+ + SI A + +L S F + + I + + + F+ Sbjct: 165 YLVLVTSASILAFTASLLVMFWLQSLFTKPLNTLLEVIEHISNKKDYTQRVNLKSNDEFS 224 Query: 202 YITY----HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + + + + + + +L + +T + A++ + AKS FLA MS Sbjct: 225 QLAHSFNVMIGEVDARGRQLETINHELENRVSERTFELQQTLEIAKKASQAKSEFLAVMS 284 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HE+RTPLN I+GFS+++ + N+ + I+ S Q LL L+NE+LD S+ +A Sbjct: 285 HEIRTPLNGIVGFSDLLTSFKL----NKEVSNTVQMINESAQTLLVLLNEVLDFSKADAN 340 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLL 376 + +L +L D+V ++ A +K ++ I P S + D +RQ+I N + Sbjct: 341 KMDLDIKTFNLPDLVTSTCHSHKVSAGKKGLDFEVVISPLSHENYLGDAVRVRQIINNFV 400 Query: 377 SNAVKFTAIGGRVHVTVGWT---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 SNA+KFT G + + V S ++KD G GIA ++ ++ T F Q I Sbjct: 401 SNAIKFTRQ-GAISIAVSEHMEASDTYITFTVKDTGIGIAASKLESIFTPFMQADSTITR 459 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I Q ++ G++ + S L EG +P +P+DN ST Sbjct: 460 EFGGTGLGLAICQQLVVLMNGRYGVESTLDEGSHFWFSIPL------VPQDNSIST 509 >gi|294506864|ref|YP_003570922.1| Signal transduction histidine kinase, membrane [Salinibacter ruber M8] gi|294343192|emb|CBH23970.1| Signal transduction histidine kinase, membrane [Salinibacter ruber M8] Length = 352 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 143/345 (41%), Gaps = 18/345 (5%) Query: 153 ALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV 212 +S L + A++ + + L + + ++ L Sbjct: 10 FVSRLGLKLGATAGLIAGLGAVAVSSASGGSAALLGLGTAVLVYAASHVWLHRRLRHLQG 69 Query: 213 KILSCQA---------------EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMS 257 + + E L+ E+ + + +E + F+ ++S Sbjct: 70 VLHEIRTHEFAAETPPSGPHGDELSTLLWEVYRTGQSLETEIQELKEMESYRREFIGNVS 129 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HEL+TP+ ++ GF+E + + + + ++ I L +L ++ +++IE Sbjct: 130 HELKTPIFSVQGFAETLLDGALD--DESVNRTFLKKILHHANRLDSLARDLSTITKIETD 187 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 ++S A ++ ++ I +++RA+EK I Q++ P L ++ D +R+V++NL+ Sbjct: 188 ELDMSNEAFNVAELFDAAIESVEIRAEEKGIMPRQRVAPDLPQIYGDFDRLRRVLVNLVD 247 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ GG V + + I + D+G GI+ +P + F + + + G Sbjct: 248 NAIKYNQDGGTVQLEAE-SQNDEVVIRVVDDGIGISPDHLPRLTERFYRVDKSRSRNQGG 306 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 GLGL I + I+A H + + S EG LP + + P Sbjct: 307 TGLGLAIVKHILAAHDRELHVESAPEEGSTFYFTLPTSPQPSLQP 351 >gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] Length = 619 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + F++++SHELRTPL ++ + E + + + E ++G + + ++ Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELASRFLGVVSDETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKID 355 +IN++L LSR+++G +L+ +++ ++ + + + +K I + Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYFT 488 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NAVK++ GG + + T +SI D G GI Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRK 547 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 548 DLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] Length = 572 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 9/301 (2%) Query: 180 MSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 +L + L ++ AL ++ L + ++A + + E Sbjct: 134 WEGDLLTVPLEVEKVIVGALIVKVNLSEQDIDFIESQLLLVTDLICSAITHQLAINRNIE 193 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 +RKRAEE A F+A ++HELRTPLN +LG +E+I + N + +E + ++ +S Sbjct: 194 SRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTEL----NSSQREIVNNLSQS 249 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 G+ L +IN++LD S+I AG EL SL D+ + RA EK ++ + Sbjct: 250 GEFLRTIINDLLDYSKINAGMLELIPKKFSLHDLRNTIESIFTNRAIEKQLDFNISVASD 309 Query: 358 LS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGE 416 + D + + Q+ +NL+ NA+KFT G V+V + W S + S++D G GIAE Sbjct: 310 VPSHFKGDLERITQLFVNLIGNAIKFTEE-GHVNVDIEW-SDQHFVFSVEDTGVGIAESA 367 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 T+ F Q + +G GLGL I + ++ G + S + G +P Sbjct: 368 YKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVGLMDGDIGVTSIVGSGTTFTISVPLQV 427 Query: 477 V 477 V Sbjct: 428 V 428 >gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] Length = 754 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 174/364 (47%), Gaps = 16/364 (4%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 L W L G A + A ++ AL++ L + P + +A Sbjct: 360 LAWNAPFLSLFGIDRGAV------AEGIDAGALMALASADLCPLLAHFTPPTDDDQAVEA 413 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKS-NVKILSCQAEKDDLIAELEVAKSLSDE 237 + + K + + E + L+ + E Sbjct: 414 VFPNEQFVRVVRTKTVGGGWVCVAHDVSDAKIEAEQRARNERELQHTVEVLKRNREDLRE 473 Query: 238 TRKR-------AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 +R A+E N AKS FLA+MSHELRTPLNAI GFSE+++ E GPL ++ Y EY Sbjct: 474 AVRRYETEKLNAQEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLGHKKYVEY 533 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 I DIH SG HLLNLI++ILDLS++EAG+ +L + L +++E + +++++ +E ++E Sbjct: 534 IKDIHASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEMQMREASLEF 593 Query: 351 FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGP 410 D + SVWAD + ++QVILN+LSNA KFT GG V VT + I D G Sbjct: 594 RSLTD-HIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVTIL-IADTGI 651 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 G+ ++ + F A +G GLGL +++S+M G + S+ R G Sbjct: 652 GMTPEQLEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEPRRGTVAAI 711 Query: 471 ILPN 474 LP Sbjct: 712 CLPR 715 >gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 748 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 13/244 (5%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTP+N I+G +E++ + NE + YI I SG+ LL +IN++ Sbjct: 227 KSAFLANMSHEIRTPMNGIVGMTELLTETPL----NEEQRLYISTIRNSGEALLVIINDV 282 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKG 367 LD S+IEA + L L + E ++LQ ++K + + D L +++ D Sbjct: 283 LDYSKIEADKLTLHPEQFDLERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGR 342 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLT 422 +RQ++ NL+ NAVKFTA G V V V +++I+D G GI +I + Sbjct: 343 IRQILTNLVGNAVKFTAQ-GHVLVRVTGVPDASAQSCDIHVAIEDTGIGIEADKIAHIFG 401 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE--VIAILPNTRVLNF 480 F Q A +G GLGL I + ++ GG + S + G LP Sbjct: 402 EFNQIEDAQNRQFEGTGLGLAITKRLITMMGGTVWVESDVGRGSCFGFRISLPTAEGPQP 461 Query: 481 IPED 484 P D Sbjct: 462 APPD 465 >gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909] Length = 586 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + K F+A++SHELRTP++ + G++E I + + ++ + + + L L Sbjct: 355 LDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESKRLNRL 412 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +NE+L+++R++A + + + ++ + +++++E + + + D Sbjct: 413 VNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYD 472 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 M QV+ NL+ NA ++T G + +++ ++I D G GIA + V F Sbjct: 473 MDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQVFDRF 531 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + A K +QG GLGL I + I+ HGG+ + S+L +G I LP ++ ++ Sbjct: 532 YKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPKSKQIS 586 >gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus] Length = 2013 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 1291 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLEHVNIIKASTDSLLNLIND 1346 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + L ++ E + A +K +E+ +D + V D+ Sbjct: 1347 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKF 1406 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT G + + + D G G + E Sbjct: 1407 RIRQVLLNVVGNAIKFT-EHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAE 1465 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q + G GLGL I+ + HGG+ RS +G + Sbjct: 1466 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1521 >gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118] Length = 618 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 10/237 (4%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +F++++SHELRTPL ++ + E + N +++ + ++ +IN++L Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAP--KFLEVTQQETSRMIRMINDLLS 436 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-------EIFQKIDPSLSSVWA 363 LSR++ G ++ ++L D V + + + I +++ V Sbjct: 437 LSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEI 496 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 D M QVI N+++NA+K++ G + V + + +SI D G GI ++ + Sbjct: 497 DTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQ-NKNHVILSISDQGLGIPRKDLGKIFDR 555 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 F + A A+ G GLGL IA+ I+ H G+ S +G LP + Sbjct: 556 FYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPYEPMTEE 612 >gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 586 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217 + + ++ L T I++ +L G+++ FF I L KS +++ Sbjct: 1 MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L + + E+ N KS +A++SHELRTPLN I+G S ++ Sbjct: 61 VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + E +EY+ I+ S L ++ ++I+DL +I++ R EL I ++ + Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L A++ I+ L + ++ D + Q++ NL+SNAVKFT GG ++++V Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+KD G GI + E V F Q + + QG G+GL I++ I GG Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + S++ +G + P + +S + +A Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322 >gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1808 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 17/269 (6%) Query: 232 KSLSDETRKRA-----------EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 + +++ R+R E N K FLA +SHELR+PLN ILG++++++ Sbjct: 1408 RKQAEQERQRLLEQEQAARAEAERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFD 1467 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 P E + I R+ + LI+++LD+++I G+ ++ + L ++ I ++ Sbjct: 1468 PT---KTNEALATIERNAKLQTQLIDDLLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMR 1524 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A K + + + P + V D ++Q++ NLLSNA+KFT G V V + G Sbjct: 1525 TAAVAKEMTLHAVL-PQIGRVSGDSARLQQIVWNLLSNAIKFTPAKGVVEVRLER-EGDR 1582 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I+I D G GI +P + SF Q + G+GLGL I + ++ HGG S Sbjct: 1583 AKITISDTGKGINPDFLPHLFESFRQEDASTTRQYGGLGLGLAIVRHLVEAHGGTIRAES 1642 Query: 461 K-LREGVEVIAILPNTRVLNFIPEDNHES 488 +G I P + P S Sbjct: 1643 PGEGQGATFIVQFPLLNAESEQPTSETAS 1671 >gi|157828187|ref|YP_001494429.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932889|ref|YP_001649678.1| sensory transduction protein kinase [Rickettsia rickettsii str. Iowa] gi|157800668|gb|ABV75921.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907976|gb|ABY72272.1| sensory transduction protein kinase [Rickettsia rickettsii str. Iowa] Length = 497 Score = 260 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 5/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 +I E + E+ + + ++F A++SHELRTPLNAI+GFSE++ E Sbjct: 241 ARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER-- 298 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + E K YI DI+ +G+HLL++IN+ILDLS+ A + ++ + L ++R +I+++ Sbjct: 299 --DEEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVK 356 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GR 399 RA + + + ++ + AD K ++QV LNLLSNAVKFT GG V + + + Sbjct: 357 PRADQAAVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAK 416 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 YI + D G GI E +IP L++FGQ + +G GLGLP+ + ++ G+F ++ Sbjct: 417 LVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQ 476 Query: 460 SKLREGVEVIAIL 472 SK+ EG + Sbjct: 477 SKINEGTTITITF 489 >gi|299065947|emb|CBJ37128.1| sensor hybrid histidine kinase [Ralstonia solanacearum CMR15] Length = 603 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79 LGL + ++ D L I VL V + ++ W LI Sbjct: 3 KLGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPVLTLAAFWDTGNRLALAGWCLIM 62 Query: 80 LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L + A G + + + + W + + GL W + + + E+ Sbjct: 63 LCLTASGLRFYFGYRYDMTRMTLAAHTRKWWTGMRIMSAVGGLAWGSSAGLYLVSPSLEF 122 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195 ++ ++I ++ A+ + + L ++ + + +L Sbjct: 123 SSLL--MIVIIGVAAGAVLSQAPVPSNLLILGTGILTPHFVLAEQAFPEHGLYVRCVLLF 180 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 +F ++ + V+ + + E L A+ DE ++RA + KSRFLA+ Sbjct: 181 FAAFLARHAANIHSTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 233 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 SH+LR P++A++ E + +ET + + Q + L +LDLS++E Sbjct: 234 ASHDLRQPVHALVLLVEALRAR----NQSETLAPLVEQLASGAQTIDLLFRSLLDLSKLE 289 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 + + + + L +++ E + A+ K + + Q+I P A+ +R+ + NL Sbjct: 290 SRKTSPTLEPVDLGEVITEVVQQFLPDARAKGLALTQRIPPLPVFGMAEPVLLRRSLFNL 349 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L NA+++T+ GG V + V + I + D G GIA + +S+ Q + Sbjct: 350 LQNALRYTSHGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSSYYQVENPERDP 406 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 QG+GLGL I + + G +RS G L P ++ K Sbjct: 407 SQGLGLGLAIYKECVRLLRGTHGVRSVPGRGSMFWMALRPVPAEIKAPLAAQPRSEQK 464 >gi|288942192|ref|YP_003444432.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897564|gb|ADC63400.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 691 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 8/260 (3%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + + L + + E R +AE N AKS FLA+MSHE+RTPLNAILG + ++ Sbjct: 143 ELEGYRSHLEELVAERTAQLSEARAQAETANQAKSAFLANMSHEIRTPLNAILGLTYLLI 202 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 ++E ++ + I S HLL++IN+ILD+S+IEAG++ L S D+ + Sbjct: 203 R---DQSSSERSRDILTKIEHSANHLLSIINDILDVSKIEAGKFTLHTQDFSTKDLFEQL 259 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 ++ + K + + ID + D+ +RQ +LN LSNA+KFT G + + Sbjct: 260 DSLVLGQVAAKRLRFIRCIDALPPLLHGDQACLRQALLNYLSNAIKFTKA-GEIKLVAEI 318 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + D G GIA ++ + F Q ++ +G GLGL I + Sbjct: 319 LDETATDLLVRFDVYDTGIGIAPADLAQLFRPFSQVDNSVARRFEGTGLGLVITHRLAQL 378 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG+ S++ +G Sbjct: 379 MGGETGAESQVGQGSRFWIT 398 >gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1023 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 96/483 (19%), Positives = 167/483 (34%), Gaps = 31/483 (6%) Query: 23 LGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFT-----------QNPI 71 L P + + S R +P+ A GT + Sbjct: 240 RPLATPDLPAARAALGERGILSGGRDYRGVPVLAYAAAVEGTPWLMLAEIDEREAYSGIR 299 Query: 72 FPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQ------IAIGLCWTLLT 125 W + + L + + + I ++ Sbjct: 300 TLTWGMGVVMALGLMLVYSGGYLVWRRDREQRERATLQARQIAEARFRVIFEQAPLGVVL 359 Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP-YAVFLSFFPVVVALSTQAIMSMHV 184 L E + + + + L + L I + Sbjct: 360 LDPRTRRITEANPRFAAIVGRSVGELVGVDPIALTHPDDVAESLRQLGRLDAGRIAGYRL 419 Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 L + + ++ +D+ A +E+ + E A Sbjct: 420 NKRYLRPDGTPVWVSLAFAPVQV--ASEDAPRYLGIVEDISARIEM-EERLREASAAAAA 476 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N AKS FLA MSHE+RTP+NA+LG ++V+E E + P ++ +G I +G LL + Sbjct: 477 ANAAKSEFLAHMSHEIRTPMNAVLGLAQVLEREPLAP----AQRDMVGRIRGAGASLLAI 532 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWA 363 ++++LDLS+IEAG+ + L ++ ++ A+ K + + + + Sbjct: 533 LDDVLDLSKIEAGQLRIEPRPFDLRALLANLDSLMGQAARAKGLALRIEPPALPPGQLRG 592 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI----SIKDNGPGIAEGEIPT 419 D + Q+++NL+SNA+KFT G V + V + ++D G GIA Sbjct: 593 DGLRIEQILINLVSNAIKFTER-GEVSLRVRADEVGDVRLRLRAEVRDTGIGIAPEAQAR 651 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + F Q I G GLGL I + ++ GG + S+ G LP RV Sbjct: 652 LFAPFTQADAGIARRFGGTGLGLSICKRLVELMGGAIGVHSQPGLGSTFWFELPLERVAG 711 Query: 480 FIP 482 P Sbjct: 712 GEP 714 >gi|78048724|ref|YP_364899.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037154|emb|CAJ24899.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1191 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 142/261 (54%), Gaps = 11/261 (4%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + L+ R+ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ + + Sbjct: 789 RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y I +G+HLL L+N+ LDL+RIEAG+ L L +V + + +++ A++K Sbjct: 845 QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904 Query: 347 NIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG---RGQY 402 + ++D +L ++ D ++Q++LNLL NAVKFT G VH+ + +G Sbjct: 905 QLAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTER-GSVHLRLTTLPQYTRQGLR 963 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D GPG++ + + F Q A+ + G GLGL I + + A GG + S+ Sbjct: 964 VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSE 1023 Query: 462 LREGVEVIAILPNTRVLNFIP 482 L +G + LP V + +P Sbjct: 1024 LGQGACFVVELPLHWV-STLP 1043 >gi|148254922|ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407095|gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 729 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 132/318 (41%), Gaps = 12/318 (3%) Query: 175 STQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSL 234 I S + ++ + + + + + + + ++ Sbjct: 266 GISRIYSFRRVKDQPLVVVVGQATDEVFSAIRVDRGLMVGTLLTVIIGIITILIARYQAG 325 Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +R AE A+S FLA MSHE+RTP+N ++G + ++ + Sbjct: 326 LAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGL----ADLLLSADLAPEQRKIATTL 381 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S +LL L+N++LD S+++A R E+ L V +L RA+EK +++ I Sbjct: 382 RESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQLTTSI 441 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ--YISIKDNGP 410 P + V D +RQV+ NL+ NA+KFT G + V +G S+ D G Sbjct: 442 APDVPNYVVGDPARLRQVLFNLVGNALKFTEAGSVNIDVRAENLAGPNLTLVFSVADTGV 501 Query: 411 GIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 GI + + F Q +I G GLGL I + ++ GG ++SK+ EG Sbjct: 502 GIPAEAVGRLFRQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKIGEGSTFTF 561 Query: 471 ILPNTRVLNFIPEDNHES 488 + + P+ + E Sbjct: 562 SI----EVQPQPQPDVEQ 575 >gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 969 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ T + T + Y I R+G Sbjct: 589 QELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTT----QDPTQRSYTESIRRAG 644 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 645 AHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLG 704 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 705 DITASGDSTRIRQILLNLLNNAIKFTER-GVVALKLTTLGSYQGLRFEVADTGPGINAEQ 763 Query: 417 IPTVLTSFGQGSIA-IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GG + S+L G + LP Sbjct: 764 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPLR 823 Query: 476 RVLN 479 V + Sbjct: 824 WVAS 827 >gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 865 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 96/482 (19%), Positives = 167/482 (34%), Gaps = 29/482 (6%) Query: 13 GLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIF 72 +S D +++ + L R + + + + + Sbjct: 163 ATKLSQRADEYVSGLVAELRSKTQHRLAQQAHLTRRTNTIAIVTVAASLGFALMLAVAFA 222 Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIK---IGEVYVWRIWLLVGQIAIGLCWTLLT---- 125 + + G+ + E+ AI L Sbjct: 223 RSLVARLHGLAKVVRAFGEGELTRRTHERSPDELGELGRVFDRMADAIQAQDGLRLSKKY 282 Query: 126 ----------LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 + + ++ L+A S L + A Sbjct: 283 VDDVLDTMTNALVVLDEDAIIEKVNRATCRLLACDESELVGARAERIFGMFSEATGAATP 342 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 + + + + C E I E + + Sbjct: 343 VPWAEEHMQDAEIALFTRQGEVRMVAFSGATMRDEGDAKIVCMLED---ITERKRLIAEL 399 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E + AE AK+ FLA+MSHELRTPLNAILG+++++ + E ++ + + Sbjct: 400 IEAKGAAESATKAKTAFLANMSHELRTPLNAILGYAQMLGDDD---NLTEQQRDALTTMR 456 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 SG+HL L+ ++LD+S+IE+ R EL+ S L + + ++RA+ K + +I Sbjct: 457 TSGEHLATLLEDLLDISKIESDRMELAPSEFELTRFLDGLVAPFRMRAESKELHFGYEIS 516 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 L V ADE+ +RQV++NLL NA+KFT G V ++D G GI Sbjct: 517 GDLPGMVRADERRLRQVLINLLGNAIKFTER-GSVTFRANM-HDGKVRFQVEDTGRGIPG 574 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AIL 472 + + F Q + +G GLGL I++ ++ G + S L G L Sbjct: 575 DAMEDIFAPFRQAGQPEQ-QVEGTGLGLAISKRLVELMDGSIGVESVLGRGSVFWAEVAL 633 Query: 473 PN 474 P Sbjct: 634 PA 635 >gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] Length = 568 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 134/311 (43%), Gaps = 8/311 (2%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNV-KILSCQAEKDDLI 225 + + H+ + LA F ++ + + K LS E Sbjct: 122 LATIQPYVEVPHWQHDHLCLPLMVERLAAGHLVFATHPDNIERDFIVKQLSLVGELLCSA 181 Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 ++ DE+RKRAEE A F+A ++HELRTPLN +LG +E++ ++ P Sbjct: 182 LSRQLIMKRQDESRKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDTSLDP---- 237 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 Y+ ++ SG L +IN++LD S++ AG +L + D+ + +A+E Sbjct: 238 EQLSYLTNLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKARE 297 Query: 346 KNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 K IE + W D + + Q+++NL+ NA+KFT G V V W + Sbjct: 298 KKIEFVVNTRGEFPTYWIGDVERINQILVNLVGNAIKFTHR-GAVTVAARWV-DERLLLR 355 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI T+ F Q + +G GLGL I ++++ G S E Sbjct: 356 ISDTGIGIPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGE 415 Query: 465 GVEVIAILPNT 475 G E +P Sbjct: 416 GTEFFVSIPLQ 426 >gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1358 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 35/321 (10%) Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR---------------------A 242 T L +S ++ + Q E EL+ ++ RK Sbjct: 608 TRALKQSEAELQAQQEELRVANEELQQRTGALEKQRKEISTKNIELLDAQKIVEGKVDEL 667 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E KS FLA+MSHELRTPLN+IL S+++ G L+++ E G IH SG LL Sbjct: 668 ETSGKYKSEFLANMSHELRTPLNSILILSQLLSTNKAGNLSDKQV-ESAGAIHSSGAELL 726 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 NLIN+ILDLS++EAG+ EL I I + + + A +K I ++P L ++ Sbjct: 727 NLINDILDLSKVEAGKVELIIEEIPFKRIEADLHRLYKDLAHDKGISFDITLNPQLPQTL 786 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG---RVH-------VTVGWTSGRGQYISIKDNGPG 411 D + ++QV+ NL++N+ KFT G + + + ++KD+G G Sbjct: 787 KTDSQRLQQVLRNLITNSFKFTLQGSVSLEIEPAPAEQLLNTRLEGQKAIVFAVKDDGIG 846 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + + +F Q + G GLGL I++ + GG + S EG Sbjct: 847 IPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSISKELTKLLGGFITLSSVEDEGSTFRIT 906 Query: 472 LPN--TRVLNFIPEDNHESTQ 490 LP + PE+ E+ Sbjct: 907 LPLNNQAIATDTPEEKLETED 927 >gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 419 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 10/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + EL + L D R+ A + KS F+A+MSHE+RTPLNAI+GFS ++ + Sbjct: 167 VTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMA----TATSE 222 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I + + LL L+N+I DLS+I+AG S D++RE + +R Sbjct: 223 EEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKGLFGMRLN 282 Query: 345 EKNI-EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 E + + + + ++++ + QV+ NLL NA+KFT G + Sbjct: 283 ENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCHMEGTDEVCF 341 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI E E + + F + QG GLGL ++Q I+ N GG+ + S++ Sbjct: 342 YVSDTGIGIPEEEQEKIFSRFTKLD----REMQGTGLGLTLSQIIVHNLGGRCGVESEVG 397 Query: 464 EGVEVIAILPN 474 +G ILP Sbjct: 398 KGSTFWFILPL 408 >gi|254481247|ref|ZP_05094492.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214038410|gb|EEB79072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 642 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 8/355 (2%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 L P + + I+ L L +LS + F+ +V +S + ++ Sbjct: 120 FLEYATPIIFDEKQQGIFSLRIDLAGLQSRSLSLLGAVFISFILSIFLVYGMSRKLQKAV 179 Query: 183 HVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRA 242 LA Y ++ ++ + ++ +E S+ Sbjct: 180 TKPIDKLANAFNDVSINKNYSLRLKNQTADELGKLADGFNSMLEVIEKRDRESENLVHDL 239 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + AKS FLA+MSHE+RTPLN I+G + +++ T +++ + Y I S LL Sbjct: 240 KAATAAKSAFLANMSHEIRTPLNGIIGITSLLDQTT----DDKKRRAYYTTIENSANALL 295 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SV 361 +IN+ILDLSRIEAGR+E ES L ++ + + A+EK I + P + Sbjct: 296 LIINDILDLSRIEAGRFEPDESNFKLDEVANHVRRVFEPSAKEKGIAFEAVLAPRTPLDL 355 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWT--SGRGQYISIKDNGPGIAEGEIP 418 D + + QVI+NL+ N +KFT G V ++ + + D+G GI Sbjct: 356 TGDSRRLTQVIINLVGNGLKFTEEGAVSVAISAEDVSLDSATLHFQVFDSGIGITAEAQK 415 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F Q +I G GLGL +++ ++ GG+ ++S+ EG +P Sbjct: 416 NIFDDFSQVDGSITRRFGGTGLGLSVSKKLVELLGGEIGVQSRSGEGSRFWLKVP 470 >gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1557 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 147/361 (40%), Gaps = 18/361 (4%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W L I L+ P + A + + Sbjct: 1069 AWETFPLTATVPIAETAR-----TGEAIFLANVTEFAAKYPQIANVPSLTGNCAFACIPL 1123 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + +A ATA F K + + A+ E K+ R Sbjct: 1124 IVEQQTIGVMALSFATAQKF----NEEQQKFMLTLGQQCAQAIARSQLYEAEKN----AR 1175 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 AE N K FLA +SHELRTPLN I+G+++++ T ET K+ + I R+ + Sbjct: 1176 AVAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTYK---EETIKQGLETIERNAK 1232 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 LI+++LD+SRI G+ L+ + L + V+ + ++L A+ K+I I + Sbjct: 1233 LQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIAIHTILSDEPV 1292 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V D ++QVI NL+SNAVKFT GRV V + Q I + D G GI +P Sbjct: 1293 QVMGDGDRLQQVIWNLVSNAVKFTPSEGRVEVRLEQVGRDAQ-IQVIDTGKGITPEFLPY 1351 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVL 478 V F Q G+GLGL I ++ HGG + +S +G LP + Sbjct: 1352 VFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAQSAGEDQGATFTVKLPLHKSA 1411 Query: 479 N 479 + Sbjct: 1412 D 1412 >gi|58696692|ref|ZP_00372242.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila simulans] gi|58698386|ref|ZP_00373299.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630987|ref|YP_002727778.1| sensor histidine kinase [Wolbachia sp. wRi] gi|58535099|gb|EAL59185.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila ananassae] gi|58537134|gb|EAL60244.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila simulans] gi|225592968|gb|ACN95987.1| sensor histidine kinase [Wolbachia sp. wRi] Length = 475 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 3/257 (1%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 ++A+ + ++ E+EN K +F AS++HELRTPLNAI+GF+E+I+ Sbjct: 208 LHFSNTKMLAKQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKN 267 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 ET+G +++ YKEY DI+ +G HLL LIN++LD S+ E+ + + +L I+ C+ Sbjct: 268 ETLGSMDDSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCV 327 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 ML + +E I + +++ V AD K M+QVI+NLLSN++KFT G + + + Sbjct: 328 NMLLPKLKEAGINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKEN 387 Query: 397 -SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 I DNG GI + +I V++ FGQ ++ +G G+GLP+++ ++ GG Sbjct: 388 IEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGT 445 Query: 456 FLIRSKLREGVEVIAIL 472 F I+S+ + G + Sbjct: 446 FDIKSEAKLGTTITLNF 462 >gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] Length = 883 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 103/262 (39%), Positives = 148/262 (56%), Gaps = 7/262 (2%) Query: 211 NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGF 270 + A D ++ L K LSD+ N AKSRFLA+MSHELRTPLNAI+GF Sbjct: 627 EIATSLRHAISDMMLRHLRHVKELSDQ----LAASNEAKSRFLANMSHELRTPLNAIIGF 682 Query: 271 SEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 S+++ G L ++Y+ IH SG+HLL ++N++LDLSRIEAGR ELS ++ Sbjct: 683 SDLMMSGMAGTL-PPRIQDYVQSIHASGEHLLRMVNDVLDLSRIEAGRMELSPESLDAGI 741 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 + EC+ ML RA + + + + L + AD +RQ++LN++ NAVKFT GGRV Sbjct: 742 LAAECVGMLLPRAVRGEVLLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVD 800 Query: 391 VTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA 450 V +G G +++D GPG+ E+ T + F Q + A +G GLGLPIA+S++ Sbjct: 801 VRARALAGGGAVFTVRDTGPGMTPEEVLTAMEPFRQVAQTRA-AVEGTGLGLPIAKSLVD 859 Query: 451 NHGGQFLIRSKLREGVEVIAIL 472 H G I + G V + Sbjct: 860 LHAGNLAIETAPGLGTTVTIEI 881 >gi|152994244|ref|YP_001339079.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835168|gb|ABR69144.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 781 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 11/265 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + +D L ++ + ++ AE+ NLAKS+FLA+MSHE++TPLN ILG E+++ Sbjct: 254 ELRYHRDQLQEQVSRRTRRLQDAKETAEKANLAKSQFLATMSHEIKTPLNGILGMVELLQ 313 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 + ++E + I++SG+ LL ++N +LD +R+E G Y S+ ++V Sbjct: 314 SQPQSSQSHEK----LSAIYQSGEALLEILNGLLDYARLEEGMYSPEILPFSISELVNST 369 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 ++ +AQ++N ++ +I L +RQ++ NL+SNA+KFT G V ++V Sbjct: 370 SLLFLAQAQQQNTQLNVQISDQLQDRYQGAVGALRQILSNLVSNAIKFT-RDGSVTISVM 428 Query: 395 WTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 G I ++D G GI + + + F Q ++ G GLGL I ++ Sbjct: 429 PAEENPEQSSGVLIEVEDTGMGIPDRYLSHIFERFSQADESVTRQFGGTGLGLAITAQLV 488 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 G+ + S+ G +P Sbjct: 489 RLLEGEMGVESEEGRGSVFWFYVPL 513 >gi|160880960|ref|YP_001559928.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160429626|gb|ABX43189.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 467 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 159/314 (50%), Gaps = 9/314 (2%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 +F F + ++++ A++++ V+ L + L YI + + N ++ D Sbjct: 154 LFWLFPSIFISITVSAVLAV-VMADKLTNTITKPLQQIAYIMVNYKEENPELSLPSTPYD 212 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAK---SRFLASMSHELRTPLNAILGFSEVIELETM 279 +L + A+ +SD +K EE + F ++ SHEL+TP+ +I G++E++ + Sbjct: 213 ELNIIAQSAQKMSDSVKKYTEEIEFERMVRQEFFSNASHELKTPITSIRGYTELLLGGFI 272 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 + T +E++ I + + NLIN+IL +SR+E YE+ + I + ++++ I L Sbjct: 273 --NDEATSEEFMKRILAETESMTNLINDILLISRLETRDYEIETTEIRMAMLLQDIIKTL 330 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + A ++ +E+ P V A+++ +R+++LNL+ NA+K+ G V+VT+ T GR Sbjct: 331 EPIAAKQEVELQTVCKP--VIVRANKQHLRELLLNLIGNAIKYNKPNGMVYVTIT-TIGR 387 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I +KD G GI + + V F + G GLGL I + I+ +GG + Sbjct: 388 DLLIEVKDTGIGIPKDSLVRVFERFYRVDKGRSRKVDGTGLGLSIVKHIVNYYGGNITLD 447 Query: 460 SKLREGVEVIAILP 473 SK+ G LP Sbjct: 448 SKINVGSTFTVRLP 461 >gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 585 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 29/309 (9%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + + ++ + L + F Y + + LS A E Sbjct: 286 LRTHWIMALVLLFTASAYCGFLIVRAYFVVRKKTFELSD-------------AAKELSEA 332 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP-----LNNETYKEYIGD 293 R +E + KS F+ S+SHELRTP+ +I+GF ++I + NE K+ Sbjct: 333 NVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNEKLKKKTER 392 Query: 294 IHR-------SGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 I G+ L LIN++LD ++IE+GR + + + D++ + ++ + Sbjct: 393 IMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVSTIKGQL-PI 451 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +++ D S V AD + QV++NLLSNAVKFT G V V+ + +++K Sbjct: 452 GVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFT-SNGYVSVSYESSLSNILTVTVK 510 Query: 407 DNGPGIAEGEIPTVLTSFGQG--SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 D G GI +G++ V F Q +S +G GLGL I + ++ ++GG+ + S+L + Sbjct: 511 DTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGKIWVESELGK 570 Query: 465 GVEVIAILP 473 G P Sbjct: 571 GSFFKFTFP 579 >gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 692 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 11/297 (3%) Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 A ++ + + + I E+ L A + ++ + A+ N AK Sbjct: 107 AMTAVFSIVVSILLGAAII--TLTIYFNLMERKRLTALSKR-EADLRDALVLAQNANNAK 163 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 FL+ MSHE+RTP+N I+G + I + ++ + I S +HLL+LIN++L Sbjct: 164 KEFLSRMSHEIRTPMNGIIGMT-TIAGNYLDDRT--RVEDCLAKIAFSSRHLLSLINDVL 220 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGM 368 D+S+IE G+ ++ L + I ++ L+A+E + + + + D + Sbjct: 221 DMSKIEEGKLAINREPFKLQPFLESVISIVWLQAKEHGLAFETALADITADTFIGDSMRI 280 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGW----TSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 Q++LNLLSNA+KFT GG V + V + SI D G G++E + + F Sbjct: 281 NQILLNLLSNALKFTLKGGTVRLQVKQFILKNNEVRLRFSISDTGIGMSEEFLSRLFIPF 340 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 Q I G GLG+ I ++++ GG ++S +G + LP + Sbjct: 341 EQAPSTISKKYGGTGLGMAITKNLVNLLGGTIHVKSSPGKGTTITVELPVEIEKEAV 397 >gi|325293768|ref|YP_004279632.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325061621|gb|ADY65312.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 1154 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 7/351 (1%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 +A +I+ + + + A + ++ ++ A + F Sbjct: 597 GMAAAIAVTAIGGILALIAHQVGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHD 656 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + IA + + + ++ AE N AKSR++ +SHELRTPLN Sbjct: 657 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLN 716 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG+++++E + P + I I RS HL LI+ +LD+S+IEAGR ++ + Sbjct: 717 AVLGYAQILERDETIPAP---RQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNE 773 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 I++ D + + + M + +AQ K +E + SL V DEK +RQ+++NLLSNA+KFT Sbjct: 774 INIQDFLDQIVDMFRPQAQAKGLEFRHERAHSLPQYVRTDEKRLRQILVNLLSNAIKFTD 833 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V V + + ++ D G GIAE ++ + F +G G+GLGL I Sbjct: 834 E-GSVTFDVAYR-SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTI 891 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + + GG+ + S+ G L + V E T + Y+ Sbjct: 892 TRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKT-IRSYS 941 >gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 860 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 94/300 (31%), Positives = 155/300 (51%), Gaps = 6/300 (2%) Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 +L ++ + ++ F +TY L + + KD L ++ + R AE Sbjct: 344 LLSVTALRTESGQITGFVGLTYDLTERKQAENELRRHKDQLEETVQQRTADLLLARDAAE 403 Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 N AK FLA MSHELRTPLN ILG++++++ + + E + I +S ++L Sbjct: 404 AANKAKGLFLAHMSHELRTPLNGILGYAQILQRDELVG---ERKAAALNIIRQSSEYLRA 460 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VW 362 LI++ILDLSRIE GR + S ISL +R ++ LRA++K +E ++ L + + Sbjct: 461 LIDDILDLSRIETGRLDFVLSNISLAKFLRGVTDIVGLRARQKGLEFSCELAADLPAGIR 520 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE+ +RQV+LNLL+NAVKFT G+V + VG +++D G GI + E+ + Sbjct: 521 CDERRLRQVLLNLLTNAVKFT-DSGQVVLRVGRVGPSRFSFAVEDTGIGIEQNELELIFR 579 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 F Q ++ G GLGL I++ +M G ++ S++ +G + + P Sbjct: 580 PFEQVGD-LQRRLGGTGLGLAISRQLMRYLGSDIVVESRVGKGSTFRFEVELQAASSSTP 638 >gi|294505916|ref|YP_003569974.1| sensory transduction histidine kinase [Salinibacter ruber M8] gi|294342244|emb|CBH23022.1| sensory transduction histidine kinase [Salinibacter ruber M8] Length = 1106 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 148/306 (48%), Gaps = 9/306 (2%) Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKS-NVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + ++ A M + ++ F + N++++ ++ + + E ++ Sbjct: 808 GGLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAKE 867 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE+ N KS FLA+MSHE+RTPL +I+GF+E I E G + T + G I + G+ Sbjct: 868 TAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGRR 925 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++ +L+LS++EA EL+ + +++ + + + + +A++ I++ + Sbjct: 926 LLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPLW 985 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ADE +R V+ NL+SNAVK+T GGRV + + + ++D G G+ + T+ Sbjct: 986 ARADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAEDQ-AVLEVEDTGQGMDPAAVSTL 1044 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +F Q S +G GLGL + + + G + ++ G + LP Sbjct: 1045 FEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLPR-----P 1099 Query: 481 IPEDNH 486 P++ Sbjct: 1100 APDETD 1105 >gi|78048723|ref|YP_364898.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037153|emb|CAJ24898.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1177 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 9/250 (3%) Query: 228 LEVAKSLSDETRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + R++ AE+ ++AKS FLA++ HE+RTP+ +LG SE++ + N Sbjct: 788 RRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL----NAK 843 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + Y+ I ++G HLL L+N+ LDL+RIEAG+ EL + + +E + A + Sbjct: 844 QRGYVDAICKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPIADAR 903 Query: 347 NIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + + + P V D +RQ+++NLL NA+KF G V +TV G + Sbjct: 904 GLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAER-GEVSLTVSQ-HGDALRFKV 961 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 +D GPGI + + F QG A S G GLGL I Q + G+ +RS+L Sbjct: 962 RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1021 Query: 465 GVEVIAILPN 474 G + LP Sbjct: 1022 GTQFTVDLPL 1031 >gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 1128 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 12/373 (3%) Query: 118 GLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ 177 G+ W L+ + + K + + ++I + + F++ + + + + Sbjct: 332 GITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAE 391 Query: 178 AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + + +S + + +++ ELE L + Sbjct: 392 KVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQN---EELESNIKLIQK 448 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + + K FLA+ SHELRTPL+ ++G +E + G + + K + I +S Sbjct: 449 QNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVI-PASQKYQLDIIIKS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L NL++++LD ++ G ++ +SA+SL R + + K I I ++ Sbjct: 508 GQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPAD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L +V AD + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 568 LKAVSADPQRLEQVLYNLIGNAIKYTSE-GKIVISATIV-DDHVRVQVVDTGQGIPAEHL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + Q QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLAS- 684 Query: 478 LNFIPEDNHESTQ 490 E+ ++TQ Sbjct: 685 -----EEEIQATQ 692 >gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme DSM 15981] gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme DSM 15981] Length = 938 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 83/268 (30%), Positives = 143/268 (53%), Gaps = 8/268 (2%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 L A + ++ ++AE + AKS FL+ MSHE+RTP+NAI+G +E++ +E+ Sbjct: 539 LTARGRMRSAIMQAELEKAEARSTAKSDFLSKMSHEIRTPMNAIVGMTELVSMESG---L 595 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + ++ + I S ++LL+LIN+ILD+SRIE+G ++E A SL +I+ E ++ +A Sbjct: 596 SPETRDKLEKIRSSSRYLLSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQA 655 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 Q++ + + + + D +RQV+LNLL N+VKFT GG + ++V GQ Sbjct: 656 QQRGLALECVRNIDCDWLTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQACGMEGQEA 715 Query: 403 ---ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 S++D G GI+ + + F Q G GLGLPI+++++ + GG+ + Sbjct: 716 VYDFSVRDTGVGISHEDQERIFRPFEQLGGNEL-KSLGTGLGLPISRNLVRSMGGELTLE 774 Query: 460 SKLREGVEVIAILPNTRVLNFIPEDNHE 487 S +G L ++ E Sbjct: 775 SDTGKGAVFSFRLRFKPAGEAPAHEDRE 802 >gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1152 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE-------ENLAKSRFLASMSHE 259 + + + Q E LE A + + + K+AE+ N AKS+FLA+MSHE Sbjct: 463 VMRDVTERRQAQQELLAAKERLEEANAQLEASIKQAEQLANEAFVANNAKSQFLANMSHE 522 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTP+N I+G + ++ + + ++ + +S L+ +IN+ILD S++EAG+ Sbjct: 523 IRTPMNGIIGMAALLLDTPL----DGQQTVFVQTVRKSAHALVTIINDILDFSKVEAGKL 578 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSN 378 EL E+ SL + +L ++A EK +E + P + ++ D +RQV++N++ N Sbjct: 579 ELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVPDALIGDSIRLRQVLVNIVGN 638 Query: 379 AVKFTAIGGRVHVTVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 AVKFT G V + + + SIKD G G+ E +I TV +F Q ++ Sbjct: 639 AVKFTDA-GEVSLEISMAAMDDARCTLLFSIKDTGAGLPEDKIETVFEAFAQADSSVTRK 697 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHEST 489 G GLGL I+QS++ GG+ + ++ G + L HES+ Sbjct: 698 FGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFT--ASFALQEQ-GAEHESS 749 >gi|91787248|ref|YP_548200.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91696473|gb|ABE43302.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1197 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 193/465 (41%), Gaps = 45/465 (9%) Query: 44 SLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEV 103 + + I + A + W T+ + S T A ++ I E Sbjct: 498 ARAFSAVIAMGTAFVTAPLIAWATRGRYYIARSSGTSEADA----SYQRYATQQCVICER 553 Query: 104 YVWRIWLLVGQIAIG------------------------LCWTLLTLVEPGTWTPEYLTI 139 + G W+ YL Sbjct: 554 AYEGPDMAHCPAYQGPICSLCCTLDARCGDLCKPQASLSAQWSAALRWLLPHRIWPYLDT 613 Query: 140 YKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALSTQAIMSMHVLDISLAGMLATALS 198 LL+ L I L + + LS A+ S + ++A ++ Sbjct: 614 GLGHFLLLMLIIVPLLASVFGLLYHQEMGALGDFMLSGSALRSGFLKAYMALLVIAGLVA 673 Query: 199 FFTYITYHLFKSNVKILSCQAEKD-DLIAELEV-------AKSLSDETRKRAEEENLAKS 250 ++ + + + + + Q I AK ++ R A++ N AKS Sbjct: 674 WWLVLAHKSRQVAQEESNRQTHLLMREIELHRQTDEALQLAKLHAEHARHAADQANQAKS 733 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 R+++++SHELRTPLN+ILG+++++ + P K+ + I R G+HLL+LI LD Sbjct: 734 RYISAISHELRTPLNSILGYAQLMGEDAAIP---PHRKQAVSVIRRGGEHLLSLIEGTLD 790 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMR 369 ++RIEAG+ L+ + D V E M +L+A K + + +L V ADEK +R Sbjct: 791 IARIEAGKLTLTVKPMQFADCVHEMAGMFELQAAAKGLGFRFETAGNLPELVRADEKRVR 850 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSI 429 Q+++NLL NA+KFTA G+V + + YI I+D GPG++E E+ + F +G+ Sbjct: 851 QILINLLGNAIKFTAQ-GQVIFRL-RHAREMAYIDIEDTGPGMSEAELAQIFEPFARGAA 908 Query: 430 AIKSAEQ--GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 A SAE G GLGL IA+ + GG+ + S +G L Sbjct: 909 AGHSAEGTPGAGLGLTIAKMLTDLMGGEMTVLSTPGQGSVFRVRL 953 >gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 613 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 6/260 (2%) Query: 217 CQAEKDDLIAELE--VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + +I E E E R +E + KS F++++SHE RTPL ++ ++ Sbjct: 349 YRISTKQVIDEDEEYQFTVTLLEDITRLKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMV 408 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 E G L NE E + + + L L+N++LDLS+IE+G+ E+ + + DI+ + Sbjct: 409 INEDTGEL-NEEQHELLEAAYEDVERLTELVNDLLDLSKIESGKIEMEFDKVDVNDIIEK 467 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 + +A+EK+IE+ K +AD + VI NL+ NA+++ G++ V Sbjct: 468 TLNPFFKQAEEKDIELKFKQSEENVFAYADPSKISWVISNLIGNALRYAEQ-GKIEVDAE 526 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 GR +S+ DNGPGI + + F + + + G GLGL IA+ I+ H G Sbjct: 527 I-KGRRVLVSVADNGPGIPKEYQAKIFEKFVRTGN-DQDEKSGTGLGLAIAKEIITAHNG 584 Query: 455 QFLIRSKLREGVEVIAILPN 474 + S+ EG +P Sbjct: 585 RIWFDSEEGEGSTFSFYIPR 604 >gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] Length = 779 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 7/271 (2%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + K + D + +S ++ AE+ ++ RFLA+MSHELRTP+ Sbjct: 175 RVTKRTIPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPIA 234 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 +++G E++ E ++ K + S ++L L+N+ILD S++++ L E Sbjct: 235 SMIGLLELLSYENRNIADDYKLKSLM----SSAKNLQLLVNDILDYSKLDSQGISLVEEF 290 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTA 384 +S D++ + + + + A+E+ + + D + + D + Q++ N+LSNAVKFT Sbjct: 291 VSYTDLLGDLVRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFTE 350 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G++ VTV T I + D G GI+ ++ ++ F Q +I+ G GLGL I Sbjct: 351 Q-GKIKVTVRATKQNISII-VDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLAI 408 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + + G I S EG V+ LP Sbjct: 409 VKKLTTLMSGYISINSTEGEGTSVMISLPLK 439 >gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1248 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 17/322 (5%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L A L + + L G++ Y L K + L Sbjct: 652 LTAATTQLVQTEDCTLIHSFLGIPLFMHDQLIGLVVVTNCESGYSQQTLQK--LDPLLST 709 Query: 219 AEKDDLIAELEVAKSLSDETRKR----AEEENLAKSRFLASMSHELRTPLNAILGFSEVI 274 + E + + ++ A++ ++AKS FLA+MSHE+RTPLN ++GF +++ Sbjct: 710 TSRLLSAYRKEQERLALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLL 769 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + + T K+Y+ + +SG LL +IN+ILD S+IEAG+ EL + L + Sbjct: 770 LQTNL----DATQKQYLDIVSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDG 825 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 ++ + ++K +E+ + L W DE ++QV+ NLLSNAVKFT+ G + V Sbjct: 826 LRDLMIYQTKQKGLEMILSLAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSK-GTIEFKV 884 Query: 394 GWTSGRG-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSI 448 +KD G GI + +F Q + G GLGL I+ + Sbjct: 885 TMLQKESNQKALLRFLVKDTGVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRL 944 Query: 449 MANHGGQFLIRSKLREGVEVIA 470 +A + + S +G Sbjct: 945 LALMDSRLCLESTHGKGSTFYF 966 >gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp. EE-36] gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp. EE-36] Length = 713 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 D+ +E + L D R AE N AKS FLA MSHE+RTP+N I+G +EV+ + Sbjct: 189 ARDITETVEYQRKLVD-ARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTAL- 246 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 + + Y+ I SG+ LL +IN++LD SRIEA R + + L + +E +++LQ Sbjct: 247 ---TQDQRLYVDTIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQ 303 Query: 341 LRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A +K +++ D L + D +RQV+ NL+ NAVKFT G + + Sbjct: 304 PLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFT-QNGHILIRATGLPDA 362 Query: 400 G-----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G I I+D G GIA I ++ F Q S +G GLGL I Q ++ GG Sbjct: 363 GSGNVLIKILIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGG 422 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFI 481 + + S+ G LP + Sbjct: 423 EIWVTSEHGIGSCFGFELPLKAQEDSA 449 >gi|301309590|ref|ZP_07215532.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300832679|gb|EFK63307.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 638 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 149/307 (48%), Gaps = 15/307 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 P L + ++ + + F + ++ + + QA+K L+ Sbjct: 344 LLPKDAILLNFPFKDQYPRLFWSLIIVVSTMCCFVFGSFIIMYTQESKAKRQAQK-ALLH 402 Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E E E ++A E + KS FLA+MSHE+RTPLNAI+GFS +I + E Sbjct: 403 EKES----LAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAELDL---TAEE 455 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++Y I + + LL L+N+ILDL+RIE+G + + +L D+V+ E Sbjct: 456 KEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDVPE- 514 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-TSGRGQYISI 405 IE +K + +++D++ + Q + N+L NA+KFT+ G + + + T+ + + + Sbjct: 515 GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSA-GFIEIGYEYSTNAQDVRLYV 573 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI+ + + F + QG GLGL I Q+I+ G+ L++S+ +G Sbjct: 574 QDTGIGISPEDQEAIFERFKKLDD----FVQGTGLGLSICQAIVKQLNGRILLQSEKNKG 629 Query: 466 VEVIAIL 472 + + Sbjct: 630 CRISLVF 636 >gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 608 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 4/229 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL ++ + E + + ++E +I + ++ L+N++L L Sbjct: 380 FVANVSHELRTPLTSMKSYLEALADGAI--NDSEVAPRFIHVTQTETERMIRLVNDLLQL 437 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQ 370 S++++ Y ++ I+L + + I ++ + ++I +++ + V+ D + Q Sbjct: 438 SKMDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQ 497 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 ++ N+LSNAVK++ GG + ++ + +SIKD G GI + IP V F + A Sbjct: 498 LLDNILSNAVKYSPEGGTILCSLKI-AKDNVIVSIKDEGVGIPKENIPYVFDRFYRVDKA 556 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 G GLGL IA+ I+ HGG + S G + LP +N Sbjct: 557 RSRNLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLPFDEAVN 605 >gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya zeae Ech1591] gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591] Length = 955 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 6/249 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G ++++ +++ N Sbjct: 453 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDAN----R 508 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S LL +I++ILD S+IE+ + ++ S + +++ + +K +E Sbjct: 509 LVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLPLVVKKRLE 568 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ IDP++ + D ++QV+ NLLSNA+KFT G + V + ++D Sbjct: 569 LYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDT-GCIVFQVACSDEGYLVFKVRDT 627 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F Q ++ QG GLGL I + +++ G I S+ G E Sbjct: 628 GVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEF 687 Query: 469 IAILPNTRV 477 +P R Sbjct: 688 GIRIPLYRA 696 >gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1306 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 7/337 (2%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 + A + + P +A + + + + T L F F + I+ Sbjct: 708 SVRKATYTNLDPGDYIFRVRASNNDGIWTPAPLELHITILPPFWRTPLAFFLYILLIIGA 767 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFLASMSHELRTPLNAILGFSEVI 274 ++ E E +S ++ ++ A+ E + K RF ++SHE RTPL+ I+ E Sbjct: 768 LILARRVVLERERLRSRIEQEKQEAQRIHELDALKIRFFTNISHEFRTPLSLIITPLE-- 825 Query: 275 ELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRE 334 + +G ++ + + R+ + LLNL+N++LD ++E +L S ++ V++ Sbjct: 826 --KILGKGVEANIQQQLILVQRNARRLLNLVNQLLDFRKMEVQEIKLHTSEGDIVAFVKD 883 Query: 335 CIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG 394 +++K I + ++ D + ++I NLLSNA KFT G + V V Sbjct: 884 LTTSFSDLSEKKQIHLDFHSSVKALNMLYDPDKIEKIIFNLLSNAFKFTPEQGNISVDVQ 943 Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG 454 G I +KDNG GI + + F Q I QG G+GL I + + H G Sbjct: 944 VQHGSTLAIIVKDNGIGIPLEQQERIFERFFQHDIPGSLLNQGSGIGLSITREFVKLHSG 1003 Query: 455 QFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQY 491 + S G +LP +++ + + ST Sbjct: 1004 TITVDSAPGMGSTFTILLPLKGLVSQLVVTDPVSTNI 1040 >gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1990 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 21/262 (8%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 E + + E +KSRFL++MSHE+RTPL I G ++ + NE ++Y I Sbjct: 1317 LLEAKLK--EAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTVL----NEEQRDYTNTI 1370 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 S LL +IN+ILDLS+++AG +L ++ + ++ A K +E+ + Sbjct: 1371 QTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIV 1430 Query: 355 DPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR---------GQYIS 404 + + V D+ +RQV+LN++ NA+KFT G V + Sbjct: 1431 EEDVPAWVKGDKVRIRQVLLNVIGNAIKFTTE-GEVFSRCRVYKDGASSNLDNEIVLEFA 1489 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G G + E + F Q + G GLGL I++ ++ HGG+ + + Sbjct: 1490 IIDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGK 1549 Query: 465 GVEVIAI----LPNTRVLNFIP 482 G LP P Sbjct: 1550 GSTFTFTAKFALPTKEDHPDAP 1571 >gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 1052 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 139/265 (52%), Gaps = 12/265 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDE-TRKR-AEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 + + D + +++ +S+ +R EE N AKS FLA+MSHE+RTPLNA+LGF+++ Sbjct: 690 ETHSRRTDSQEIIAISRDISERIAMERGLEEANKAKSMFLANMSHEIRTPLNAVLGFNDL 749 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 I T ++ KEY I SG++LL LI +ILD S++EAG + + S +VR Sbjct: 750 IARNT----SDPKLKEYAAQIDLSGKNLLTLIGDILDFSKVEAGGVQFNYDFFSPHHLVR 805 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHV 391 E I + ++ A+++ I++ K + + DE +RQ+++NL+SNA+KFT G + + Sbjct: 806 EIIALFEMEAKKRGIDLITKERTPIPKQIKLDEDRVRQILINLVSNALKFTEKGSVCLEI 865 Query: 392 TVGWTSGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + + Q S+ D G GI E E + +F Q G GLGL I+++ Sbjct: 866 HAAYIKQKDQRCNLTFSVIDTGIGIPEKEQHVIFEAFRQQEGQSTRKYGGTGLGLAISKN 925 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 + G ++S + G Sbjct: 926 LAEGMEGSIDVKSNVGSGSTFTLSF 950 >gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 482 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 14/275 (5%) Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 T ++ K + DD + +E+A +++ RK E K ++++SHE+ Sbjct: 222 MTTGRWYQCIDKAIRW---TDDRLVRMEIAIDITE--RKEME---RMKDEMISAVSHEMH 273 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL A++GF+E + ++ E K + IH+ + L LIN L L R++A + Sbjct: 274 TPLTAMIGFTEFLLEN---EVDREQQKNCLQTIHKETERLSELINNFLQLQRLKASMVKF 330 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 +S+ A + I + P L V +E+ + QV NL+SNA+K Sbjct: 331 RIMPVSVGL--LLADAAALYTAASRKHTIVVECPPDLPPVRGNEEQLYQVAGNLISNAIK 388 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 ++ GG V + G +KDNG GI+ V F + + + G GLG Sbjct: 389 YSPAGGTVTLG-GRADDDMVVFWVKDNGVGISPEFQERVFERFFRVDNSDRRKVGGAGLG 447 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 L + + I+A HGG+ + S G LP + Sbjct: 448 LTLVREIVAAHGGRVWVESTPDAGSTFFVSLPRMK 482 >gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ECD227] Length = 949 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT I G + + + G I ++D Sbjct: 567 LYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLAR-DGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TIRIPL 690 >gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 964 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 10/260 (3%) Query: 217 CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIEL 276 I+E + ++ +++AE N KSRFLA+MSHE+R+PLNAILG E++ Sbjct: 310 LFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLH 369 Query: 277 ETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECI 336 + N+ + + +G LLN IN+ILD S+IEAG+ L + +V + + Sbjct: 370 SKL----NKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFEPDKLVAQVL 425 Query: 337 IMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 +L+ +A +K +++ +D ++ + D + + QVI NL+ NA+KF+ G + V + Sbjct: 426 QILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVS-GTITVEMWI 484 Query: 396 TSGRG----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + + D+G GI+E + F Q + +G GLGL I + ++ Sbjct: 485 ADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITM 544 Query: 452 HGGQFLIRSKLREGVEVIAI 471 GG+ + S+L +G Sbjct: 545 MGGEIELESELDKGCCFTFY 564 >gi|296537357|ref|ZP_06899219.1| sensory box sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] gi|296262316|gb|EFH09079.1| sensory box sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] Length = 430 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 97/423 (22%), Positives = 158/423 (37%), Gaps = 46/423 (10%) Query: 57 LLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIA 116 L+ I P +L +A + + + L Sbjct: 12 LVFGGIILLVVWASGGPGLALAGMAAFFLLAIGVLAHIIAYPASNRARRGAAVALDCGFL 71 Query: 117 IGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPV-VVALS 175 ++ + ++ + L A+ + VAL+ Sbjct: 72 S---------LQLHWGAEAVAMFWPVYLWVVFGNGFRFGLAWLRIAMLAALAGFGAVALT 122 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 T L L L + + L Sbjct: 123 TPFWQEQWHLATGLWVGLLILPLYAGTLIRKLS--------------------------- 155 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 + +++AE N AKS FLAS+SHELRTPLNAI+G ++ G + +E + + Sbjct: 156 -QAKQQAEAANSAKSLFLASVSHELRTPLNAIIGMGGLLR----GTRLDGEQREMLSTMD 210 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + + LL+LI++IL+LSRIEAGR + ++ E +L + ++K + + Sbjct: 211 SAARSLLSLIDDILNLSRIEAGRMPSERVEFAPAALLAELRALLAAQCRDKGLRFSLHLT 270 Query: 356 PSLSSV-WADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYI--SIKDNGPG 411 P +V D + + V+LNL NAVKFTA GG V + G G + + D+G G Sbjct: 271 PRTPAVLRGDRRHLLDVLLNLAGNAVKFTAEGGVTVALDAEPLPGGGLLLHAEVSDSGIG 330 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 IA + +F Q +I + G GLGL I + ++ GG +RS EG Sbjct: 331 IAAEAQQRIFETFTQADSSIINRFGGTGLGLAICRRLVQLMGGAIGVRSAPGEGATFHFS 390 Query: 472 LPN 474 +P Sbjct: 391 VPV 393 >gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 455 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 2/255 (0%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 + + + + + NLAKS F++ ++HELRTPL +I G +I +G + E Sbjct: 203 QSRRSLREKERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEV-PER 261 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 ++ + R+ HL+ L+N++LD+ + AG+ E I L + I Q A Sbjct: 262 FRRMLSLAERNCNHLIQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNF 321 Query: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 + I P VW DEK + QV+ NLLSNA KF+ + V + T G IS++ Sbjct: 322 GVTIEAAPMPEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKAT-GTEAVISVQ 380 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D+G GI + + F Q + + G GLGL I +SI+ H G+ + S+ G Sbjct: 381 DSGRGIPREKQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGT 440 Query: 467 EVIAILPNTRVLNFI 481 L V Sbjct: 441 TFYIKLERVAVAQAA 455 >gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 613 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577] gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577] gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 617 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 8/243 (3%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 + + + +F++++SHELRTPL ++ + E + + + +++ ++ Sbjct: 372 QRIDQDRKQFVSNVSHELRTPLTSVRSYIEALHDGAW--KDPKLAPKFLKVTQDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI-----EIFQKIDPS 357 +IN++L LSR+++G ++ +++ ++ + + ++ I + Sbjct: 430 RMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKR 489 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 V D QV+ NL++NA+K++ GG + + T +S+ D G GI +I Sbjct: 490 DLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETR-NKVILSVSDQGLGIPRKDI 548 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 P + F + A + G GLGL I++ ++ GQ S +G LP + Sbjct: 549 PHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALPYEPL 608 Query: 478 LNF 480 Sbjct: 609 EEE 611 >gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] Length = 841 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 4/260 (1%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E +A+ + E R AEE KS F+A+MSHELRTPL +I+GFSE+ + Sbjct: 584 VTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFSEL---GQLRSRAT 640 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E DIH +GQ +L L+N++LD++++E+ + + L ++R L+ Sbjct: 641 PKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARELEPLLH 700 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I++ +++ + AD +QVI N+L+NA+KF+ GR+ V + + Sbjct: 701 QKQIDLRLRLEDAPLIAKADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDGQGNICVD 760 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 D GPG+ E+ + F Q S K G GLGL I + I+ G ++ Sbjct: 761 FLDQGPGVPTQELDKIFQPFVQSSK-TKDGSGGTGLGLAICRKIIDAMDGTITAANRPDG 819 Query: 465 GVEVIAILPNTRVLNFIPED 484 G LP P + Sbjct: 820 GAVFRITLPTRSAQETQPGE 839 >gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1436 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS FLA+MSHE+RTPLNA+LGF+++ ET + + + I SGQ LL +IN+I Sbjct: 844 KSEFLANMSHEIRTPLNAVLGFAQIGARET----DPNRARTFFRRILDSGQLLLGIINDI 899 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKG 367 LD S+IEAG+ ++ ++ + L ++ + +L RA++K + + DP+L + D+ Sbjct: 900 LDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDDLR 959 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV+ NLLSNAVKFT G V + S++D G G+ E + + F Q Sbjct: 960 LSQVLANLLSNAVKFTDQ-GAVTFGIRR-EEGWIVFSVEDTGIGMHEDYLANLFQPFEQA 1017 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +I G GLGL I++ ++ GG+ S+ EG LP Sbjct: 1018 DGSITRRYGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLPL 1064 >gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 513 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 16 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 71 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 72 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 131 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT I G + + V G I ++D Sbjct: 132 LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHV-RCDGDYLSIRVRDT 189 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 190 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 249 Query: 469 IAILPN 474 +P Sbjct: 250 TLRIPL 255 >gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 695 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 AE+ A+S FLA+MSHE+RTP++ + G E + ++ NE KEY RS + L Sbjct: 303 AEQALKARSEFLANMSHEIRTPIHGVQGMLETLCSTSL----NEKQKEYTHVAMRSAESL 358 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSS 360 LN++N+ILD S+I++G ++ +++ + I M + A +K IE + S + Sbjct: 359 LNIVNDILDFSKIDSGHMTYDVEPVNFKELIEQQIPMFRRLADKKGIEFITETAAVSDTL 418 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK----DNGPGIAEGE 416 AD + Q+++NL++NAVKFT G + ++ T +K D G GI++ + Sbjct: 419 FLADSLRLSQILMNLMNNAVKFTDK-GSIKISTRCTKYGAGRFRVKLIVTDTGIGISDEQ 477 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + + F Q + + G GLGL I +I+ ++ G + S + EG I Sbjct: 478 QKVIFSPFLQAEESTQRRFGGTGLGLAIVNNIVEHYDGNVEVSSAIGEGARFIVT 532 >gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] Length = 1441 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 96/484 (19%), Positives = 185/484 (38%), Gaps = 36/484 (7%) Query: 32 DFDREIITLHVESLFRVSPILPLFVLLV------ANIGTWFTQNPIFPM----WSLITLA 81 F + LF LL A + + P+ W Sbjct: 78 AFGTAFGLNFITLLFERESAKFQLALLACYINFLAGFSDYMSWKGYAPIVRDSWGQGFQL 137 Query: 82 VYAANLSLGKKVMNSDIKIG-EVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIY 140 + L M + I + +++ ++ + + + +L + + Y Sbjct: 138 LRTVMWLLTTPAMVYLLSIISDFSRLKVYSVMLADVLMITFGILAFLAYNKV--MSILFY 195 Query: 141 KSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFF 200 A L A + ++ + V+L + ++ + + + Sbjct: 196 MVAWCLFAYVVHSMWSMFHASIAEARHDSSRVSLEVLRLFAVGLWFTFPVIWIVVKMGLV 255 Query: 201 TYITYHLFK-------------SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENL 247 T S + E+ LIA V + + + ++ Sbjct: 256 DIRTEEWTWCACDFLGKVMFSSSLLHGNFLTIEQRRLIAMRIVEEGNRIQVIQELKDLVE 315 Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 K RF++SMSHELRTPLN I+G S+ + + + G +N++ K I I SG LLNLIN+ Sbjct: 316 QKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKT-ITTIKTSGARLLNLIND 374 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 ILD + + G+ + ++L +V + I + Q A+ +++ + ++ V D Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR-GVKLVNDLRENVPFVLGDTGR 433 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + QV NL+ N+ KFT G + ++ +++ D G GI E + + +F Q Sbjct: 434 IIQVFHNLIGNSCKFTHS-GNISISAA-VKDDEVEVAVADTGIGIPEDKFDQIFLAFEQV 491 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL------PNTRVLNFI 481 +++ G GLGL + + ++ HGG+ ++S+ +G L PN Sbjct: 492 DMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTLKIHSEHPNEGQPQMT 551 Query: 482 PEDN 485 P ++ Sbjct: 552 PTES 555 >gi|94495744|ref|ZP_01302324.1| two-component signal transduction histidine kinase [Sphingomonas sp. SKA58] gi|94425132|gb|EAT10153.1| two-component signal transduction histidine kinase [Sphingomonas sp. SKA58] Length = 439 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 86/435 (19%), Positives = 158/435 (36%), Gaps = 36/435 (8%) Query: 45 LFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVY 104 L L +LL+ G + I V ++ G + Sbjct: 13 LSISQITASLAMLLLGTGGALMMGAHPLHIALPILAGVVVLIITSGDAGLRPADPPLAAP 72 Query: 105 VWRIWLLV----GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLP 160 +I + G+ L+ + + + + Sbjct: 73 PEQIDFTAHPDFPSMLEGISDPLMLVEKGRIARANRAAMRLLGVHIEGEDARIAIRHPAA 132 Query: 161 YAVFLSFFPVVVALSTQAIMSMHVL-DISLAGMLATALSFFTYITYHLFKSNVKILSCQA 219 S P+ + + + + A++ + + + S Sbjct: 133 AERLASTAPLAEPIMIELVGLGTRDQRWQMRVAPVGAVATMRRLVHLVDHSGTH------ 186 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 + F+A+ SHELRTPL ILGF E + + Sbjct: 187 ------------------------AAERMRVDFVANASHELRTPLAGILGFIETLADPEL 222 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G + ET + ++ + + + LI++++ LSRIEA +Y +SA+ L ++V E + + Sbjct: 223 GK-DVETRQRFLKIMDGEARRMQRLIDDLISLSRIEAEKYRTPDSAVDLSELVAEVVGVF 281 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 + ++ ++ +I PSL+ V D + Q+I NL+ N+VK+ G + VT+ S Sbjct: 282 RSSHGDRGRDVEMEIAPSLAPVLGDRAQLSQLIHNLIGNSVKYGRPGTPIRVTLSEGSSG 341 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + + D G GI +P + F + A G GLGL I + I+ H G+ I Sbjct: 342 MARLCVADEGEGIGPDHLPRLTERFYRVDSGRSRAMGGTGLGLAIVKHIVERHRGRLDIA 401 Query: 460 SKLREGVEVIAILPN 474 S L +G + +LP Sbjct: 402 STLGKGTSITVLLPP 416 >gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] Length = 656 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 11/247 (4%) Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA+MSHE+RTPLNA++ + + + Y+ + S LL++IN+IL Sbjct: 281 SEFLANMSHEIRTPLNAVI----GLTGLLLDTDLTPEQRNYLEIVRNSSDSLLSVINDIL 336 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGM 368 D S+I+ G EL S L + + ++ R EK + + +D L ++ D + Sbjct: 337 DFSKIDGGMMELEHSPFDLRRCIESTMDLMVTRVAEKGLVLKVVLDDQLPTMLVGDASRL 396 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 RQV+ NLLSNAVKFT G V V+V G + D G G+ + ++ + F Sbjct: 397 RQVLANLLSNAVKFTDK-GFVEVSVRGNAIPEGFELRFDVLDTGIGMPQDKLDRLFMPFS 455 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDN 485 Q +I G GLGL I++ ++ GG+ +S G + L + Sbjct: 456 QIDSSITRRYGGTGLGLAISKRLVGMMGGRIWAKSNPGVGSTFTFTI--KVKLPCMQPVQ 513 Query: 486 HESTQYK 492 HE K Sbjct: 514 HEVKDLK 520 >gi|188585612|ref|YP_001917157.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350299|gb|ACB84569.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 5/235 (2%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F++++SHEL+TPL +I GF E ++ ET+G N T +E++ I + L Sbjct: 368 LEQMRKEFISNISHELKTPLTSIKGFVETLKEETLGENN--TQREFLNIIEEETDRVSRL 425 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++ LSR+E + E ++ +++++ + + + + Q R Q+ I++ P D Sbjct: 426 INDLTILSRLETNKVEFNQDEVNVLNFLDKTVSISQKRWQQDGYRIYRGGVPFDLKALMD 485 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 E ++QVILNL+ NA + G ++ + + S+ DNG GI E + + F Sbjct: 486 EDKIQQVILNLVDNACRHNPPGTKIKLKA-VSEKDYIRFSVTDNGKGIPEEDKERIFERF 544 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + + G GLGL IA+ + H + S++ G R+L+ Sbjct: 545 YRVDKSRYRDYGGTGLGLSIAKHAVIGHNSSLNVISRVGRGTTFYFY--VKRILD 597 >gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 584 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 F++++SHELRTPL ++ E ++ + + + ++ + +L ++ E+L+ Sbjct: 364 DFVSNVSHELRTPLASLKALVETLQEGAL--EDPPAAQRFLRQMEIEIDNLTQMVRELLE 421 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 LSRIE+G L +S +I+R ++L+A+ + + SL V+AD + + Q Sbjct: 422 LSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQ 481 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 V++NL NAVKFT GG + + V G+ ++D G GI ++ + F + Sbjct: 482 VLVNLTHNAVKFTPPGGEITLGVKQ-EGQAICFWVRDTGVGIPPEDLERIFERFYKTD-- 538 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + +G GLGL IA+ I+ HGG+ S++++G LP + Sbjct: 539 RSRSGEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLPLEK 584 >gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 979 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 163/468 (34%), Gaps = 23/468 (4%) Query: 10 KDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN 69 + I + + + E S ++ I Sbjct: 270 AALTQRILESRPQAAERTGESRRYRNRLFMASAE--VTNSGWTIVYAFTWRTI--LRDLG 325 Query: 70 PIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEP 129 P + + L V L + + K + + Sbjct: 326 PRLAAYIAVVLLVLGFMWLLLLMLDHKLFKPDYERS--QRVFESEALNRTMVAAAPSGFA 383 Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 + + +S + L+ + + + Sbjct: 384 LLSFEQGDILLQSNLMR----AYELNTHPDEPRLHERLLGLYDRSPGAPAWQSDLEMPLR 439 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAK 249 I ++ +L ++ L DE R A+ N AK Sbjct: 440 LA-DGRVDDLLVSIVRTKYRGKDVLLCSFSDVTTLKNTERK----LDEARAAADAANQAK 494 Query: 250 SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEIL 309 S FLA MSHE+RTPLNAILG E++ + PL E +G + S LL +IN+IL Sbjct: 495 SAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQEER----VGVVTSSSTALLGIINDIL 550 Query: 310 DLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL-SSVWADEKGM 368 D S++E+G+ L + L ++RE M + AQ K +E ID +L D + Sbjct: 551 DFSKVESGQMTLESISFDLAQVIREVAAMFEPVAQAKGLEFDCVIDDALAPHYLGDPTRI 610 Query: 369 RQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 RQ+++NL+SNA+KFTA G V++ I + D G G+ + ++ +F Sbjct: 611 RQIVINLVSNAIKFTATGDVLLEVYLKDDTAEDSPIVIGVSDTGIGMTPQQQESLFHAFT 670 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 Q +I G GLGL + + G ++S+L G + LP Sbjct: 671 QADSSIARRYGGTGLGLALCLRLTELMHGTIWVKSELHAGSTFVVTLP 718 >gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 700 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 E N AK++F++++SHELRTPL +I F E + E +++ +Y+ +R L Sbjct: 432 ELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSSAERLDYLEIANRETDRLTR 490 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N++LDLSR+E+G+ + + + ++ + + QL+A++K I++ + +DP L VW Sbjct: 491 LVNDVLDLSRLESGK-QYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVDPDLPLVWG 549 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKDNGPGIAEGEIP 418 + + QV+ NLL NA+KFT GG V V S + +++ D G GIA + Sbjct: 550 NYDLLLQVMTNLLGNALKFTPSGGLVTVHAHLVVQADGSPQAVRVAVADTGIGIAPEDQE 609 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F + +G GLGL I ++I+ H + + SKL +G L Sbjct: 610 RIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHRTRICLESKLEQGSTFWFDL 662 >gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] Length = 616 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 14/332 (4%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFT 201 L + + +AL F + + + L T I + +L G+++ FF Sbjct: 15 VLRLGRTKAALLGFFVLAFFAIIVQGALTYLFTGEIQTRDILRSISFGLISAPFVIYFFN 74 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 I L KS +++ + L + + E+ N KS +A++SHELR Sbjct: 75 LIVVKLEKSRIQLEQSIYDLGVLREQDAHLNATL-------EKNNRDKSVLMATISHELR 127 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN I+G S ++ + + +EY+ I+ S L ++ ++I+DL +I++ R EL Sbjct: 128 TPLNGIIGLSRILLEGEL----TQQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIEL 183 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAV 380 + ++ + L A ++ I+ +L + + D + QV+ NL+SNAV Sbjct: 184 FNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLPNFILVDNARLSQVLWNLVSNAV 243 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 KFT GG +++ V S++D G GI + E V F Q + + QG G+ Sbjct: 244 KFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQRKVFAMFYQAENSQEKKAQGSGI 303 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I++ I GG + S+ +G + Sbjct: 304 GLAISKRIAKLMGGDLTLESEEGKGSTFTLTI 335 >gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1010 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 8/253 (3%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +E RKRAE + AK+ F +++SHE RTPL +LG E + + G L + + + Sbjct: 334 EEARKRAEALLEIDRAKTAFFSNISHEFRTPLTLMLGPLEELLSQQDGVLT-KQQEANVT 392 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 HR+ LL L+N +LD SRIEA + ++L D+ + + + +E Sbjct: 393 ATHRNAMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNV 452 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 + + D +VILNLLSNA K+T G + V + S + + ++D G GI Sbjct: 453 TCKDLSMAAYVDRDMWEKVILNLLSNAFKYTLQ-GSISVILE-ESDQHAILLVRDTGVGI 510 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E+P + F + + + +G G+GL + + ++ H G + S+ +G + Sbjct: 511 PVSELPNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKI 570 Query: 473 PNTRVLNFIPEDN 485 P R +PE+ Sbjct: 571 PLGRA--HLPEEQ 581 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 101/280 (36%), Gaps = 24/280 (8%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRK-RAEEENLAKSRFLASMSHELRTPLNAI 267 ++ +++ D++ E R +N +F SH+L+ PL I Sbjct: 741 RAQIRVSRLHRHALDILQHSAEELEKKVEARTSELLRKNSELEQFAYIASHDLQEPLRKI 800 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 FSE+++ Y I S + + LI ++LD SR+ E I Sbjct: 801 RTFSELLQKSLQKGNP---VNNYFDKIQSSAERMTQLIKDVLDYSRL--SNTEEKFVPID 855 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 L I+++ L ++K I +L V ++Q+ NL+ N++KF Sbjct: 856 LNTILQQVKGDFDLLIEQKQATIKSN---TLPVVKGIPLQLQQLFTNLIGNSLKFCENQP 912 Query: 388 RVHVTVG-------------WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 + + + DNG G + + F + + + Sbjct: 913 LISIFASPLPAPEIPFYPGLQEDISYVKLEFSDNGIGFEQQFAERIFAIFQRLN--ERKV 970 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 G G+GL + + I+ NH G KL EG ILP Sbjct: 971 YAGTGIGLALCKKIVENHHGIIRANGKLNEGATFTVILPA 1010 >gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter bemidjiensis Bem] gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP, PAS, PAC, PAS and HPT domain-containing protein [Geobacter bemidjiensis Bem] Length = 1229 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 12/274 (4%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I+E + A++ + AE AKS FLA+MSHE+RTP+NA LG +++ + + Sbjct: 608 ISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTEL----S 663 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET K Y+ + LL +IN+ILD S++EAGR L + + ++ + + Q + Sbjct: 664 ETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVAQATLR 723 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQ- 401 EK IE + + ++ D + QV+LNL SNA+KFT G V V + Sbjct: 724 EKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKGKVEVEVALLAQEQGEVT 783 Query: 402 -YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 S+ D G G+ + +V T F Q + G GLGL I++ ++ GG+ + S Sbjct: 784 LRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQLMGGRMWVVS 843 Query: 461 KLREGVEVIAI----LPNTRVLNFIPEDNHESTQ 490 + G I LP P Sbjct: 844 EPGRGSTFSFIAHLALPAASGAQAAPGGEGPEPD 877 >gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 613 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|21243756|ref|NP_643338.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109344|gb|AAM37874.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1189 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 8/244 (3%) Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE+ +LAK+RFLA++ HE+RTP+ +LG SE++ ++ + Y I R+G Sbjct: 814 QEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSLDI----KQRSYTESIRRAG 869 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PS 357 HLL L+N+ LDL+RIE+GR EL S+ +V E ++ AQE+ + +I Sbjct: 870 AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVGALMAPLAQERGLRFSLEIGLLG 929 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYISIKDNGPGIAEGE 416 + D +RQ++LNLL+NA+KFT G V + + +G + D GPGI + Sbjct: 930 DITASGDCTRIRQILLNLLNNAIKFTER-GVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 988 Query: 417 IPTVLTSFGQGSIAI-KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + F QG A S G GLGL I Q + GGQ + S+L G + LP Sbjct: 989 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLPLR 1048 Query: 476 RVLN 479 V + Sbjct: 1049 WVAS 1052 >gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 586 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 20/339 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217 + + ++ L T I++ +L G+++ FF I L KS +++ Sbjct: 1 MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L + + E+ N KS +A++SHELRTPLN I+G S ++ Sbjct: 61 VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + E +EY+ I+ S L ++ ++I+DL +I++ R EL I ++ + Sbjct: 114 EL----TEQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L A++ I+ L + ++ D + Q++ NL+SNAVKFT GG ++++V Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+KD G GI + E V F Q + + QG G+GL I++ I GG Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + S++ +G + P + +S + +A Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322 >gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1] Length = 403 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 11/265 (4%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 + + +++ + + R +AEE + KS FLA+MSHE+RTPLNAI+GFS Sbjct: 149 LCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFS 208 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 ++I + E +Y I R+ + LLNL N+ILDLS +EA + + I L DI Sbjct: 209 KLI----TFATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDI 264 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + +++ + D + Q+I NLLSNA KFT G +H Sbjct: 265 CLQLKQQFCHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPK-GEIHF 322 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 +KD+G GI + T+ FG+ QG GLGL + + ++ Sbjct: 323 GY-REKEDFVEFYVKDSGIGIPAERVATIFRRFGKV----NDFVQGTGLGLTLCRMLVEK 377 Query: 452 HGGQFLIRSKLREGVEVIAILPNTR 476 GG+ +RS+ +G LP R Sbjct: 378 MGGRIWLRSQEGQGSRFYFTLPLIR 402 >gi|163735013|ref|ZP_02142450.1| two-component hybrid sensor and regulator, putative [Roseobacter litoralis Och 149] gi|161391795|gb|EDQ16127.1| two-component hybrid sensor and regulator, putative [Roseobacter litoralis Och 149] Length = 1116 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 184/448 (41%), Gaps = 21/448 (4%) Query: 48 VSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWR 107 S I L+A + W T + + + + + Sbjct: 461 SSFIALGTSFLLAPVIAWATGGRYYIARAAPADVAG--KCIMCDYSFDPPDMTHCPFHAG 518 Query: 108 IWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSF 167 + C + + +S +S F+L A Sbjct: 519 PICSLCCTLDSACRDSCKPHARLDNVTRGVLTRNLPLSVAQALMSRMSRFILITAFIGLG 578 Query: 168 FPVVVALSTQAIMSMHVLDI-----SLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 F ++ + + I ++ +++ + + + K Q E+ Sbjct: 579 FGGLLLFVRDLRYAENFDAILWVVFTMVVIVSGITVWMYLLVSESQRQARKEAEKQTERL 638 Query: 223 DL-IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 + E + +++AE NLAK+R++ +SHELRTPLN+I GF++++E + P Sbjct: 639 LFEVRAHERTDLELQQAKEKAEAANLAKTRYMTGLSHELRTPLNSIYGFAQILERDEDMP 698 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 + I I RS +HL LI +LD+SRIEAGR ++S I+L +++ + + Sbjct: 699 ---ARRRNSIITIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSSIFEE 755 Query: 342 RAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A+EKN+ + L + DEK +RQ+I+NLLSNA+++T G V + + + + Sbjct: 756 AAREKNLRFRMETSRVLPVWITFDEKRLRQIIINLLSNAIRYT-DNGEVSMRIKYRNE-V 813 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 I + D G GI E + + F +GS + QG GLGL I + ++ GG + S Sbjct: 814 AVIEVSDTGCGIREEDRARIWEPFERGSG---TQAQGSGLGLTITKLLVEILGGDIELES 870 Query: 461 KLREGVEVIAILPNTRVLNFIPEDNHES 488 +G + +L +P D ++ Sbjct: 871 TEGKGSLFRVRV----MLPAVPADARDN 894 >gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3073 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 10/308 (3%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 + ++ V++ + + S E++++A+ N AKS Sbjct: 2553 LWGLLAAYNHSQPRAWQPGEVRLFEQVCSHLGVALKQAELLSAMAESKEKADAANEAKSL 2612 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 FLA+MSHELRTPLN ILG+++++ L+N+ E + I++ G HLLNLIN+ILD+ Sbjct: 2613 FLANMSHELRTPLNGILGYAQILRRSE--SLSNKEL-EGVDTIYQCGSHLLNLINDILDI 2669 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+IEA + EL+ A +L +++ + M +++A +K I+ + L V D+K ++Q Sbjct: 2670 SKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQPSSQLPQQVEVDDKRLQQ 2729 Query: 371 VILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQG 427 V+LNLL NAVKFT G V V S + IS + D G GIAE ++ + SF Q Sbjct: 2730 VLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGVGIAEQDLVKLFQSFKQV 2789 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI--LPNTRVLNFIPEDN 485 K A +G GLGL I+Q I+ G + + S+ ++G E LP + N Sbjct: 2790 GDQHKQA-EGTGLGLAISQRIVRLMGSEIHVTSQPQQGSEFSFTINLPLAEQRLAQQQSN 2848 Query: 486 HESTQYKC 493 Y+ Sbjct: 2849 PVIVDYQG 2856 >gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1310 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 1/257 (0%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I + + + + AE N K+ FLA +SHE+RTPLNAI+GFS+++ E GP+ Sbjct: 1052 RDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPI 1111 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + Y EY DI RSG+H+L+++N++LD+S+IEAG +L +A+ L + V E + ++Q + Sbjct: 1112 GHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQ 1171 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A + + I + ++ V AD + ++Q+ LN+LSNA++FT GG++ V+ + + Sbjct: 1172 ANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVV 1231 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ-GVGLGLPIAQSIMANHGGQFLIRSK 461 + ++D G G+ E+ + F Q S G GLGLP+ ++++ + F I S Sbjct: 1232 LRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSA 1291 Query: 462 LREGVEVIAILPNTRVL 478 EG V P+ RVL Sbjct: 1292 PNEGTLVEITFPSQRVL 1308 >gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 471 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 27/357 (7%) Query: 120 CWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 ++ + + TLL +S+ + L AV L ++ AL Sbjct: 139 IVAATPILIEQQIAGAVVMHVPAETLLSVVSVINMR--TLWLAVILMLIAMLFALWLSNY 196 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 +S + + A + A F K N+K + I + + D+ R Sbjct: 197 ISRPLTAMRNATLDIAAGHFS-------KKVNIKGEDELGQLASAINYMSSELAKLDQMR 249 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 + +A++SHELRTPL+ I G+SE ++ + + E K+Y+ I Sbjct: 250 R----------DLIANVSHELRTPLSLIRGYSEALKDGVV--KDTEQQKQYVDIILDETA 297 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L++++LDLS++E+G ++ S+ + E + A + IE+ D ++ Sbjct: 298 RLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQIELTASADDNII 357 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V ADE + QV+ NL+ NA+ T GR+ V+ +I + D G GI+ ++P Sbjct: 358 -VHADEGRIEQVLYNLIQNAINHTPTHGRIIVSAE-KHDGKAFIQVSDTGRGISPDDLPH 415 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + F +G K G GLGL IA+ I+ HG ++S+ + LP R Sbjct: 416 IFDKFYKGEHNRK----GTGLGLTIARGILTAHGSDITVKSQPNQSTTFAFYLPLYR 468 >gi|239627311|ref|ZP_04670342.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517457|gb|EEQ57323.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 810 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 134/275 (48%), Gaps = 12/275 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 E ++ +L + + AE N AKS FL+ MSHE+RTP+NAI+G + + Sbjct: 265 TELREMQKKLTEQTAALKDALTVAEHANRAKSDFLSRMSHEIRTPMNAIIGMTTIAAAYI 324 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 + + + + I S +HL+ LIN++LD+S+I G+ ++ L +V + Sbjct: 325 ---DDKQRVADCLEKIGYSSKHLMTLINDVLDMSKISEGKMRIAHEPFKLETVVESISSI 381 Query: 339 LQLRAQEKNIEIFQ-KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW-- 395 + +A+EK ++ ++ + + + D + QV+LNLLSNA+KFT GG + + + Sbjct: 382 IYPQAREKGLDFTVPLVELTETELIGDSLRLNQVLLNLLSNALKFTPKGGSIRMEIRQML 441 Query: 396 TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 ++ D G G++ + + F Q ++ G GLG+PI ++++ G Sbjct: 442 KKDGKIRLRFTVSDTGIGMSSAFMERLFVPFEQEDMSAGQNAGGTGLGMPITKNLVTLMG 501 Query: 454 GQFLIRSKLREGVEVIAI----LPNTRVLNFIPED 484 G ++S+L +G I LP + P+ Sbjct: 502 GTITLQSELGKGTSFIVELDFDLPKDKGKMPAPKQ 536 >gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501] gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501] Length = 1249 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 18/295 (6%) Query: 195 TALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA 254 L ++ + Q E+ + V + D T++RA + K FL+ Sbjct: 958 VVTVEMPLANNRLGQALASRIIKQEEETGIKYLG-VVILIRDITKERA--VDQMKKNFLS 1014 Query: 255 SMSHELRTPLNAILGFSEVIELETMGPLNNETY-------------KEYIGDIHRSGQHL 301 +SHELRTPL +I+GFS +I + + E ++ + + G+ L Sbjct: 1015 MVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQNLDIVVCEGERL 1074 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+++ LD+++IE+G+ L+ I ++ I + ++E+ + L ++ Sbjct: 1075 SKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVELVEDFSRDLPTI 1134 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVL 421 DE + QV +N++SNA+KFT G V ISI D G GIAE + V Sbjct: 1135 LGDEDRLIQVFVNVISNALKFTEK-GSVTCRAEVDHEN-LLISITDTGIGIAENDYSKVF 1192 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F Q + + G GLGL I++ I+ HGG + SKL +G P T+ Sbjct: 1193 DPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFISFPLTQ 1247 >gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04] gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A] gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A] gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04] Length = 599 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + + E ++ ++ Sbjct: 360 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 417 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360 +IN++L+LSR++ G +L ++ ++V + + QEKN +I ++ Sbjct: 418 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 477 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+++NA+K++ GG + + T +SI D G GI + ++ V Sbjct: 478 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VVLSITDQGLGIPKKDLNRV 536 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A A+ G GLGL I++ ++ H G SK +G L Sbjct: 537 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 588 >gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1] gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1] Length = 493 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 6/252 (2%) Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + +R + + K+ F+A++SHELRTPL AI ++E I + L+ T KE++ Sbjct: 238 NVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNT-LEELDLGTLKEFL 296 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I HL NL+NE+LD SR+E +++ I L ++ + ++ A N+ + Sbjct: 297 EVIMDQSSHLENLLNELLDFSRLERKSLQINREKIDLCGLIESAVNAIKEFASSHNVNVL 356 Query: 352 QKID-PSLSSVWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGRGQYISIKD 407 + + P + D +RQV+LNLL+N VK++ V V + G I+++D Sbjct: 357 FESNVPCPVEAYVDPTRIRQVLLNLLNNGVKYSKKDVPDKYVRVILD-EKDGGVLITVED 415 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 NG GI + + F + ++ G GLGL I + I+ HGG+ + S++ +G Sbjct: 416 NGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLTITKEIVELHGGKIWVESEVGKGSR 475 Query: 468 VIAILPNTRVLN 479 +P R Sbjct: 476 FFVWIPKDRAGE 487 >gi|22124428|ref|NP_667851.1| two-component sensor/regulator [Yersinia pestis KIM 10] gi|45440264|ref|NP_991803.1| two-component sensor/regulator [Yersinia pestis biovar Microtus str. 91001] gi|21957214|gb|AAM84102.1|AE013653_2 putative response regulator [Yersinia pestis KIM 10] gi|45435120|gb|AAS60680.1| two-component sensor/regulator [Yersinia pestis biovar Microtus str. 91001] Length = 929 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G W L + + E L + L++ + + P+ ++ Sbjct: 261 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 320 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 ++ L L + + + L+ Q + ++ +++ Sbjct: 321 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 374 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E ++ AE+ N KS L ++SHE+RTPLN LG E+++ + H Sbjct: 375 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 430 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + LL +IN +LD SRIE+G+ LS +L+ ++ + ++ + +A K++ + I Sbjct: 431 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 490 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ + D +RQ+++NLL NAVKFT GR+ + V + +++D G GI Sbjct: 491 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 548 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 T+ F Q EQG GLGL IA ++ GG + S+ +G LP Sbjct: 549 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 604 Query: 475 TRVLNFIP 482 + +P Sbjct: 605 NAITPPMP 612 >gi|259414842|ref|ZP_05738765.1| sensor protein GacS [Silicibacter sp. TrichCH4B] gi|259349293|gb|EEW61040.1| sensor protein GacS [Silicibacter sp. TrichCH4B] Length = 466 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 134/317 (42%), Gaps = 15/317 (4%) Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 + V + K V + + + L A + S D RK Sbjct: 14 AGGVSRRRYERERRARQEAEELLEAKSRKLYVAYEALKRQAAGLEAAVLERTSELDTARK 73 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 AE N AKS FLA MSHE+RTPLN +LG + + + ++ + + SG Sbjct: 74 DAEAANSAKSVFLAHMSHEIRTPLNGVLGMAAALAETDLNL----EQQKMLEVLIESGDL 129 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI----DP 356 LL+++N+ILDL+++EAG EL + S+ D+ +L+ ++K + + Sbjct: 130 LLSVLNDILDLTKVEAGELELDITPCSINDLFESVCKQFELQVRQKGLSFAIVYGGMLEE 189 Query: 357 SLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----GQYISIKDNGPGI 412 D +RQV+ NLLSNAVKFT G + + T SI+D G GI Sbjct: 190 DNVWAEFDPTRLRQVLGNLLSNAVKFTLE-GAITMKATVTQLNDGRLNLDFSIRDTGCGI 248 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV--IA 470 E + + F Q +I G GLGL I++ I GG S+L +G E Sbjct: 249 PEDKQHRLFQPFAQADASISRRYGGTGLGLVISRKICQLMGGDISFTSELGKGTEFYGSI 308 Query: 471 ILPNTRVLNFIPEDNHE 487 ++ R + E Sbjct: 309 LIEAARARQEPQKYITE 325 >gi|228907030|ref|ZP_04070895.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL 200] gi|228852621|gb|EEM97410.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL 200] Length = 463 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 154 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 209 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 266 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 322 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 323 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQI-D 380 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + IKD G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 381 DYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWQI 440 Query: 459 RSKLREGVEVIAIL 472 S+ G VI L Sbjct: 441 ESEKDTGTTVIIKL 454 >gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 779 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 9/284 (3%) Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 F+ + + L ++ I++ VA+ R+ AE + AKS FL+ MSH Sbjct: 355 FWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSH 414 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELRTPLN+ILGF++++ + + + IG I R+GQHLL LINE+LD++RIEAG Sbjct: 415 ELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGH 469 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKGMRQVILNLLS 377 L +SL +++ E ++++ A + NIE+ P V AD + + QV+LNLLS Sbjct: 470 VSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSLPDDIGVVADRQRLIQVLLNLLS 529 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+K+ G+V + + + + IS+ D G GIA I + F + + +G Sbjct: 530 NAIKYNRPAGQVRIEIEQIAEQ-VTISVVDTGYGIAPERIGQLFKPFERLDA--NPSVEG 586 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 GLGL +++S++ G +++ EG I LP RV Sbjct: 587 TGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPPA 630 >gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 919 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 125/239 (52%), Gaps = 16/239 (6%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 KS FLASMSHE+RTPLN ++GF++++ + P ++Y+ +G+ LL +I Sbjct: 376 RVKSEFLASMSHEIRTPLNGVIGFADLLLATELTP----EQRQYVALQREAGRGLLAIIG 431 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADE 365 +ILD S+IEAG+ EL E A L ++R+C ++ A +K + + + S+ V DE Sbjct: 432 DILDYSKIEAGKLELEERAFDLHRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDE 491 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----------QYISIKDNGPGIAEG 415 +RQ++LNL+ NAVKFT G V V+VG +G G S+ D GPGI Sbjct: 492 ARIRQILLNLVGNAVKFTER-GSVLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPA 550 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + + F QG + G GLGL I++ ++ G ++S G LP Sbjct: 551 DQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPL 609 >gi|268607932|ref|ZP_06141663.1| multi-sensor signal transduction histidine kinase [Ruminococcus flavefaciens FD-1] Length = 509 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 6/231 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K+ FL+ SHEL+TPL+A+ G+++ E+E + + +E + I + ++ Sbjct: 285 NEMKTAFLSDASHELKTPLSAMSGYAQNAEIELLNGGEKRSVQEKLKRISSEANRMALMV 344 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 +ILD +RIE GR L S+ L +VRE + + N + +I L SV AD Sbjct: 345 TQILDATRIEEGRMVLELSSCDLDGLVRETVETYFSVLNKNNNRLALRIPLELPSVEADP 404 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 +++V +NL+SNA+K T G + + +++KD G GI+ ++P + + Sbjct: 405 SRLKRVFVNLISNALKHTY-NGTILIKAEA-DEGFIKVTVKDTGSGISPEDMPHIWERYY 462 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 +G + G GLGL I + I+ +HGG+ S+L +G E LP ++ Sbjct: 463 KGKHSET----GTGLGLFICKFIIESHGGKIWAESELGKGTEFTFTLPLSK 509 >gi|302875217|ref|YP_003843850.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307688898|ref|ZP_07631344.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302578074|gb|ADL52086.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 554 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 2/234 (0%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 E+ N K+ F +SHELRTPL I + + E E + + I+++ Sbjct: 292 ELEKVNFMKNEFFNLISHELRTPLTLIYSSIQ-LANEIYKTEITENLDKTLTRINKNTGR 350 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL L+N ILD+S++EAG L+ + ++ + + + + KN+ + Sbjct: 351 LLKLVNNILDISKLEAGYMVLNITNTEIVSNTEDIVESVIYHSNMKNVNVVFDTYEEEVY 410 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D++ +++LNLLSNA+KF+ + VT+ +T +S+KD G GI + +I T+ Sbjct: 411 VHVDKEKYERIVLNLLSNAIKFSNDNKSIFVTMDFTENHFI-LSVKDQGVGIPKEKISTI 469 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 F Q ++ +G GLGL + Q ++ G+ + S+ G LP Sbjct: 470 FNRFYQVDNSLTRNAEGTGLGLSLVQKLVDLMDGEISVDSEEGVGTTFTVKLPR 523 >gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 589 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 7/234 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 ++ E ++ F+++++HEL+TP+ I GF E ++ M ++ I + Sbjct: 360 RKLE---QIRTEFVSNVTHELKTPITPIRGFIETLKNGAMNNPVVAE--RFLEIIDIEAE 414 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LIN+IL LS IE + + L +V + ++Q A+EK I + + + Sbjct: 415 RLHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL 474 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + A+ M+Q+I+NL+ N +K+ G V V G+ IS+KD G GI IP Sbjct: 475 -MKANINRMKQLIMNLVDNGIKYNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPR 532 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + F + G GLGL I + I+ + G+ + S + EG E I +P Sbjct: 533 IFERFYRVDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 456 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 +++ + I+ ++ + ++ + L T + + + D++ + Sbjct: 160 MLIFIGIAVIIMAGIISVFISNSITRPLREVTAMARKMASGRFNERIEKKRDDEIGELFD 219 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 ++DE K K+ F+AS+SHELRTPL +I G++ + + E + Sbjct: 220 ALNFMADEILKN----EKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFS--DKEELQT 273 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I L ++ E+LD S+ +G+ L + + + + + LRA +NI Sbjct: 274 GLEIIENESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNIN 333 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 K+ ++ V DE ++QV+ NLL NA KFT GG+V + I + D G Sbjct: 334 FSVKVQDNMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMI-VDDTG 392 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI E E+P V F +G KS + G+GL I + I++ HGG+ I S+L +G E+ Sbjct: 393 IGIPEDELPKVTEKFFKG----KSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEIT 448 Query: 470 AILPNT 475 +P Sbjct: 449 LTIPVE 454 >gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] Length = 444 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 5/231 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 NL K F ++SHEL+TP++AI G +E++ + E++ I + L+ Sbjct: 218 NLQK-EFFGNVSHELKTPISAIKGCTEILLNGA--KNDPAALDEFLTMISDENNRMEQLV 274 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++L ++R E + ++ L +++ +CI+ A+ K+ +I + P + D Sbjct: 275 KDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDY 333 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++ LNLL+NA+ ++ + V G I + D G GI ++P + F Sbjct: 334 IQLKHCFLNLLTNAIHYSGENTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFY 392 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I QSI+ H G+ ++ S+L G LP + Sbjct: 393 RVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPKKK 443 >gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 615 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 141/265 (53%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 327 SILHDVTSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 382 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 383 AVQLL-GFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 441 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 +++ E + + A+ K I I + + D + ++ILNLLSN++KFT GG + Sbjct: 442 NLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFTNAGGNI 501 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V G Y+ +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 502 FVNVK-DCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFV 560 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G I+S+L +G E I LP Sbjct: 561 EMHNGTVTIKSELGQGTEFIIKLPA 585 >gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] Length = 839 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 6/251 (2%) Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 + + AE N AKS FLA+MSHE+RTPLN ++ +EV+ + E Sbjct: 439 QRRQSRRLKKAQLHAEAANRAKSEFLANMSHEIRTPLNGVVAMAEVLTTRDL----PERD 494 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 +E + I SG L L+++ILD++RIE+G+ + + L + R+ + + A K Sbjct: 495 RELVDIIRSSGVTLERLLSDILDVARIESGQVAIDPAPFDLEQVTRDVVALWAPLALGKG 554 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 +E+ DP+L V D +RQV+ NL+SNA+KFT G V + G ++ Sbjct: 555 VELRLDYDPTLPRLVIGDAVRLRQVLTNLISNALKFTQE-GAVTLEAVQGEGERVRFTVT 613 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G G + F Q +I G GLGL I+ ++ GG+ S + G Sbjct: 614 DTGIGFDAEFKSRIFHRFQQEDGSITRQFGGSGLGLAISDDLVRLMGGELDCESPPQGGA 673 Query: 467 EVIAILPNTRV 477 LP V Sbjct: 674 RFWFDLPLPPV 684 >gi|312111458|ref|YP_003989774.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311216559|gb|ADP75163.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 442 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 3/229 (1%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + F+A+ SHELRTPL+ EVIE + L + + + D+ + + L Sbjct: 213 AFQRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVF-DDMKDELRRMTKL 271 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN++L L+R +A EL++ L ++ E I + A++K+I+ I ++ ++ D Sbjct: 272 INDLLWLARSDANAIELTKEWFLLPPVIDELIRKCRSLAEQKHIKFVTNIQKDMA-IYGD 330 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++ + Q+I LL NAVK+ G++ + V I I D G GI + + F Sbjct: 331 KERIIQLIFILLDNAVKYNTENGQIKIAVERDRKN-VNIEISDTGIGIPVEQQALIFERF 389 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +QG G+GL IA+ I+ HGG ++S+ +G I LP Sbjct: 390 YRADPSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438 >gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] Length = 391 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I L+ + +++AE ++AKS FLA+MSHE+RTPLNAI GF+EV+ Sbjct: 141 HDITHLKQVERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFAEVM----GSAN 196 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E +Y I + L+ L+N+ILD+S+IEAG E S + + ++ + + Q+R Sbjct: 197 TEEEKTQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLLSDLQRLFQMR 256 Query: 343 AQEKNIEIFQKIDPSL--SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR- 399 + ++ +PSL + D + QVI N + NA+KFT G + +G+ + Sbjct: 257 INDAGGKVQIIAEPSLSSCLIQTDRNRVAQVISNFVGNAIKFTREGN---IRIGYEAKDT 313 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 Y +KD G GI ++ V F + ++G GLGL I+Q+I+ GQ Sbjct: 314 ELYFYVKDTGTGIPAEKLSNVFGRFVKL----NKDQKGAGLGLSISQTIVGKLSGQIGAD 369 Query: 460 SKLREGVEVIAILP 473 S EG LP Sbjct: 370 SIEGEGSTFWFTLP 383 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 8/253 (3%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 + ++RAE + AK+ F +++SHE RTPL +L E + + PL+ T ++ + Sbjct: 336 EAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLS-PTQRDRLE 394 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 R+ LL L+N +LD SRIEAGR + + + +E + + + + Sbjct: 395 IAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLIV 454 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 P SV+ D++ +++LNLLSNA K+T G + V V +S+ D G GI Sbjct: 455 NCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLT-GSITVNVQGF-DDHIELSVIDTGIGI 512 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 E ++P + F + A + +G G+GL + Q ++ HGGQ + S L +G L Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTVCL 572 Query: 473 PNTRVLNFIPEDN 485 P R N +P +N Sbjct: 573 P--RGCNHLPHEN 583 >gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 650 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K FLA +SHELRTPLN+ILG+ +I+ G LN T ++ + I R+ LI ++ Sbjct: 280 KDEFLAVLSHELRTPLNSILGWITLIQR---GKLNQTTLEQALEVIERNASIQTQLIEDL 336 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+SRI G+ L+ ++++L+++++ + ++ A+ K+I I +D ++ + D + Sbjct: 337 LDISRISRGQLNLNINSVNLVELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRL 396 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 +QV NL SNA+KFT G V + + I + D+G GI +P V F Q Sbjct: 397 QQVFWNLFSNAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQAD 456 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRV 477 + ++ G+GLGL I++ ++ HGG + S+ +G I +LP + Sbjct: 457 ASTTRSQGGLGLGLAISRHLVELHGGTIDVESEGKGKGSVFIVMLPIRPI 506 >gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella avium 197N] gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis [Bordetella avium 197N] Length = 1142 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 93/418 (22%), Positives = 164/418 (39%), Gaps = 26/418 (6%) Query: 73 PMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTW 132 M S+ + ++ + I + + + L T + Sbjct: 343 LMTSVAAAGLIIVTCWSFLLLLKWRVFIPAIAQSQRVFENEHLGRTLVDTAPVGLGLIAI 402 Query: 133 TPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGM 192 + A + + S + L+ Q ++ + Sbjct: 403 HSGKPLLRSPAMM------------DADAQLLTSRQGLSGELAAQFLLHENQPAPHDYPG 450 Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEE 245 F I +V++ + E D+ + + + +S E R A+ Sbjct: 451 ALQLDLRFPTIDGSHRDLSVRMARARYEGVDVLVAAFTDVTLEKQMERVSQEARHAADSA 510 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N AKS FLA+MSHE+RTPLNAI G E++ + + ++ I + LL+++ Sbjct: 511 NAAKSAFLAAMSHEIRTPLNAIHGNLELLSHSALDS----AQRAHVDTIRSASDSLLSIV 566 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD S+IEAG L + DI +IM A+ K + + + + + D Sbjct: 567 SDVLDFSKIEAGELRLEHLEYDIQDIAARALIMFSTTARAKGLVLGGEFGLHTTQPMRGD 626 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-GRGQYISIKDNGPGIAEGEIPTVLTS 423 + QVI NLLSNAVKFTA G+V + + + ++++D+G G++ ++ + + Sbjct: 627 PTRVAQVINNLLSNAVKFTAA-GKVTLRMTQDATPPQLVLTVEDSGIGMSPEQMSMLFQA 685 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 F Q I I G GLGL + + GG + SK +G LP R L Sbjct: 686 FTQADITINRRFGGTGLGLALCSRLSQAMGGTLSVTSKAGQGSCFTLRLPLDRDLPPA 743 >gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24] gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24] Length = 613 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|302337894|ref|YP_003803100.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635079|gb|ADK80506.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 727 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 14/260 (5%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D + +L+ + + +R EE N AKS FLA++SHE+RTPL I+G +E+++ + Sbjct: 207 DVMRHDLQQLDEQNRDAMQRLEEANRAKSDFLANVSHEIRTPLGGIIGAAELLQNTAL-- 264 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 N+ + ++ + S + L++ +N++LDLS++E G + +L ++ + + Sbjct: 265 --NDEQQHFLQILQGSSEALMSGVNDVLDLSKLEQGAMAIVPRPTNLSALLNGIATIFRP 322 Query: 342 RAQEKNIEIFQKIDPSL-SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG----WT 396 R ++K +E+F + D +RQ+++NLL NA+KFT G + + Sbjct: 323 RCRKKGLELFLTCEADEKQEYLVDPIRLRQILMNLLHNALKFTPT-GSIRLDCRSKGIQK 381 Query: 397 SGRGQY----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 S++D G GI + +I T+ F Q G GLGL IA ++A Sbjct: 382 EDGELMYRHDFSVQDTGIGIPQEKIETIFEKFTQIHNTEVQNFGGSGLGLHIAAVLVAKL 441 Query: 453 GGQFLIRSKLREGVEVIAIL 472 GG + S+ +G L Sbjct: 442 GGTLEVVSEAGKGSRFFFTL 461 >gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 762 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 17/315 (5%) Query: 174 LSTQAIMSMHVLDISLAGMLAT--ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV- 230 L + ++ LA ++ + + + + L E Sbjct: 169 LELRLVIQHRPACWVLAETTLVKPTVAREIRLALTDISERKALEEQLRQGEALWDSEERL 228 Query: 231 ----AKSLSDETRKRAE--EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 A+ + + AE N AKS LA MSHE+RTPLN I G +E++E + N Sbjct: 229 CSLNAELEARGAVRIAEVNAANAAKSHLLAHMSHEIRTPLNVITGLAELLEQGEL----N 284 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + + I +G+ LL ++++ILDLSRIEAG+ ++ L ++ A+ Sbjct: 285 AQQQHQVRRIQEAGESLLGILDDILDLSRIEAGKLGIARQPFELHKLLARIESFQGRCAR 344 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRG 400 K + + I P + + D + QV+ NL+ NA+KFT GG R+ V T Sbjct: 345 AKGLSLDLDIPPLPAGAFLGDPLRLEQVLNNLIGNAIKFTNTGGITLRIQVREAETDTPY 404 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + ++D G GI + + F Q + + G GLGL I++ ++ GG+ S Sbjct: 405 LHFEVEDTGIGIEPQILEDLFQPFVQADANLTRSRGGTGLGLAISKHLVELMGGKIGAVS 464 Query: 461 KLREGVEVIAILPNT 475 + G LP Sbjct: 465 QPGRGSTFWFDLPLE 479 >gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby] gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby] Length = 816 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E E++ A +E K + K++F A++SHELRTPL ILG E++ Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E P + I + Q LL +N++L++S+++AG+ L + I L+ ++++ Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 I + + + E+ + L D ++ V++N+LSNA+KFT +V + + Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T+ + I+DNG GI T+ F Q G GLGL IA+ + HGG Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397 Query: 456 FLIRSKLREGVEVIAILPNT 475 L + G LP Sbjct: 398 ILAGNARNGGAIFTIELPLK 417 Score = 151 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +F+ SH+L+ PL A+ I E +G + +E K+Y+ + + + L Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 ++ +L + ++G I ++ + I L + +++ +L + Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700 Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 E +R+V LL N+++ G + + R + D+GPGI + + Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F K G+GL IA+ I+ GG+ + S+ +G + P + Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810 >gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 612 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 178/366 (48%), Gaps = 14/366 (3%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSM 182 + ++ L + +A L+ + +S L L V ++ P + + A Sbjct: 212 MSDVISRHARNGAVLFVSPAAEPLLGVPVSRLLGHGLFDRVHVADRPAFLTALSDAGRGG 271 Query: 183 HVLDISLAGMLATALS-FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 + T ++ + + +E EV + D T ++ Sbjct: 272 EARSVEFRIRRDVPRGDRGRCNTADFIWLEMRCRPLEPSAKNATSEAEVVAVMRDVTDRK 331 Query: 242 AEE------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 +E + ++S FLA+MSHELRTPLNAI+GFSE+I E + ++ KE Sbjct: 332 EQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGFSEMIVQEDVLMISAARRKE 391 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I+ SGQHLL+++N ILD+S++E+G++E+ + + C +L L+A+E ++ Sbjct: 392 YAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRPALLNCCNLLALKARENEVD 451 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + +L + D + +Q++LNL+SNA+KFT GG V V+ G + + D G Sbjct: 452 LVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAA-VEGARLALRVSDTG 510 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GI ++ + +F Q S + +G GLGL I +S++A HGG+ + SKL EG V Sbjct: 511 VGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVALHGGEMSVESKLDEGTTVT 570 Query: 470 AILPNT 475 +LP Sbjct: 571 VMLPLA 576 >gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 489 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 10/288 (3%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + L I + + ++ + ++ A +++D + Sbjct: 191 ILKPLHTLKTIAERMEQGDLSQRVSITTRGEIGALAHAFNAMAD----SLSRSEQLRRNL 246 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 ++ ++HELR PL I G+ E+++ + + P E + ++ L L+ ++ D+S Sbjct: 247 VSDVAHELRNPLMNIRGYLELLQDQVLEPTP-----ETLASLYEETSLLNRLVADLQDVS 301 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVI 372 EAG+ L+ I L DI + + ++Q EK + + I L + AD++ + Q++ Sbjct: 302 LAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSIPSDLPHIEADQERVAQIL 361 Query: 373 LNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK 432 NLLSNA++ T G + + G + +IS++D G GIA +P + F + + Sbjct: 362 RNLLSNAIRHTPSQGEICLAAGLSEAG-VHISVRDTGVGIAPEHLPYLFERFYRADFSRA 420 Query: 433 SAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 A G GLGL I + ++ HGGQ + S++ +G LP + Sbjct: 421 RATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCFTFTLPVAALAPA 468 >gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy] gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy] Length = 816 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E E++ A +E K + K++F A++SHELRTPL ILG E++ Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E P + I + Q LL +N++L++S+++AG+ L + I L+ ++++ Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 I + + + E+ + L D ++ V++N+LSNA+KFT +V + + Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T+ + I+DNG GI T+ F Q G GLGL IA+ + HGG Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397 Query: 456 FLIRSKLREGVEVIAILPNT 475 L + G LP Sbjct: 398 ILAGNARNGGAIFTIELPLK 417 Score = 151 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +F+ SH+L+ PL A+ I E +G + +E K+Y+ + + + L Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 ++ +L + ++G I ++ + I L + +++ +L + Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTC 700 Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 E +R+V LL N+++ G + + R + D+GPGI + + Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F K G+GL IA+ I+ GG+ + S+ +G + P + Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810 >gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 1028 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 100/503 (19%), Positives = 193/503 (38%), Gaps = 20/503 (3%) Query: 4 SRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIG 63 +R ++D + L +P++ + I ++L + ++ + Sbjct: 274 ARNRADRDSLRVSVEAFTLLT--FPAERARVADTIQQRADALRAHTEVVLDLLQRHQAES 331 Query: 64 TW--FTQNPIFPMWSLITLAVYAANL------SLGKKVMNSDIKIGEVYVWRIWLLVGQI 115 + + L A + L ++ + + E Sbjct: 332 VQQGIRAAWVMAAFLFAMLLGIALVVIEPAVRLLRRQHVAVTTRSVEFERLAQVAQRTAQ 391 Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 + ++ L + + + + S V + P V + Sbjct: 392 QLADAQSMARLGSWSFDSATRHLQWSAELFQLFGRDSTQWTPTPELVVDDQYHPDEVPVL 451 Query: 176 TQAIM----SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 A+ + + + + + + + + Sbjct: 452 LAALQHTQETGEPYSLLMRTAERNPAVRWVRAEGRVQRRADGTRVGLMGTVMDVTDAIER 511 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 + + ++ AE N +KS FLA+MSHE+RTPL AILG ++++ E + + + Sbjct: 512 EEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGHTDLLREEAVRSAAPRDQVQGL 571 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I R+G+HLL ++N+ILD+SRIEAGR E+ A L ++ + +++ RA K + + Sbjct: 572 ETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDLPALLLDVESLMRARAAAKGLTLE 631 Query: 352 QKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKD 407 ++ ++ V+AD +RQ+++NL+ NAVKFT GRV + G GQ I++ D Sbjct: 632 TRLRNTVPSRVFADPTRVRQILMNLVGNAVKFT-AYGRVTIEAGVERAEGQEWLTITVDD 690 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGV 466 GPG+ E + + F Q ++ G GLGL I + + GG + + G Sbjct: 691 TGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICRRLATLMGGHVRLVHTAPGRGS 750 Query: 467 EVIAILPNTRVLNFIPEDNHEST 489 L + + D +ST Sbjct: 751 RFELRLVLQPIASAACVDQLDST 773 >gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 606 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 127/256 (49%), Gaps = 5/256 (1%) Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E EL + E RK AE N +K F A +SHELR PLNAILG+S++I Sbjct: 198 ETKMKTEELGRFLAKEREMRKDAERVNHSKDEFFAMLSHELRNPLNAILGWSQLILQ--- 254 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G +N+E+ ++ I I R+ + LI ++ ++SRI AG+ L I L + + Sbjct: 255 GTMNSESVRKGIETIERNAKIQNKLIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSA 314 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 A+ K + + + ID + V ADE +QV+ NLLSNA+KFT G V + V +G Sbjct: 315 VPVAEAKKVRLRKIIDSEVGFVLADENRFQQVLWNLLSNAIKFTPAEGEVEIHVRR-AGS 373 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 + +KD+G GI +P V F Q + G+GLGL I + ++ H G + Sbjct: 374 RAEVKVKDSGIGIKREFLPHVFDRFRQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAE 433 Query: 460 SK-LREGVEVIAILPN 474 S +G LP Sbjct: 434 SNGEGKGSVFTVSLPL 449 >gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] Length = 615 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 8/256 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 ++ + + L E + +EE N K+ F+A+MSHE+RTP+N ILG EV+ E + P Sbjct: 216 QVLEKQREKELLLQEAQHESEEANRIKTEFIATMSHEIRTPMNVILGSLEVLNEEDLSPK 275 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 + K + + LLN +N++LD +R+E+G+ LS+ S +VR + + + Sbjct: 276 S----KRFAEISQSAAHLLLNQLNDVLDFARLESGKVALSQGEFSPYKLVRSIEDIFRNQ 331 Query: 343 AQEKNIEIFQK--IDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 A++K ++ P L V +DE + Q++ N++ NA+KFT+ G + + W Sbjct: 332 AEQKGVKFHVDIGFSPELFMV-SDEGKISQILTNIVGNALKFTSS-GSITIRARWHETEQ 389 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 +I D G GI + +I ++L F Q + G G+GL I +++ GQ I S Sbjct: 390 LIFTISDTGIGIDKDKIASILQPFVQSDASFSRRYGGAGMGLAITSALVELLCGQLEIDS 449 Query: 461 KLREGVEVIAILPNTR 476 ++ +G + LP + Sbjct: 450 QVAKGTQFTVRLPIAK 465 >gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676] gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676] Length = 613 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ Y L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEYRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 1001 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 10/260 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I + + E R AE N AKS FLA+MSHE+RTPLNAI+G E++ + P Sbjct: 496 ITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAP--- 552 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 T + + I S LL +I+++LDLS+ E+ + + + D++ + + A Sbjct: 553 -TERRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLAS 611 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----SGR 399 K +E+ ++ P L+ D +RQ++ NL+ NA+KFT G V + G Sbjct: 612 AKGLELRCRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTER-GSVSIDAQRVVRSAGGA 670 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I I D G GI +PT+ + Q +I G GLGLP+ + I G + Sbjct: 671 RVEIRIADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVD 730 Query: 460 SKLREGVEVIAILPNTRVLN 479 S+ EG + LP Sbjct: 731 SREGEGTTMCVTLPLPEAPP 750 >gi|304310971|ref|YP_003810569.1| Probable sensor histidine kinase [gamma proteobacterium HdN1] gi|301796704|emb|CBL44916.1| Probable sensor histidine kinase [gamma proteobacterium HdN1] Length = 824 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 22/420 (5%) Query: 76 SLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPE 135 L+TL A K +++ + LL + + W L E T Sbjct: 199 VLLTLLGAIAGGYFSKSFLDTRTHAPRLNALFSVLLSFGMIC-VLWVLAAKNEFPTGIAN 257 Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 LT+ SAT +I+ + + + + VV + + +L ML Sbjct: 258 LLTVALSATAIISGIVELRRGVSMARYFLVGWISVVTGSTLWVLTLSGILPYIHGAMLYV 317 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + +I QAE+ L + AK+L ++T ++ N K FL++ Sbjct: 318 HIGCLLETVLLSLALADRINQLQAERARL---QQQAKALLEDTNRKLALSNRFKDEFLST 374 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 +SHELRTP+N I+G SE++++ + ++ Y+ I RS Q ++ ++ +IL +++ Sbjct: 375 ISHELRTPMNGIIGSSELLKMTHL----DDEQNNYLHQIARSSQGMMRMVEDILAYTQLN 430 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILN 374 R+ + +++ + E + R+Q + + P L V D + ++ + Sbjct: 431 TDRHSFEQKPVNITRLFEELCSHFRARSQAQRLSFSSHFSPDLPRFVRGDAGKIDMILRH 490 Query: 375 LLSNAVKFTAIGGRVHVTVGWTS--------GRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 LL NA KFT GG + + + SI D G G+ + +V F Q Sbjct: 491 LLDNACKFTENGG-IRFSATKIAPLAKDPQGAIWIRFSISDTGHGVPKELHESVFEMFRQ 549 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV----LNFIP 482 ++ + G+G+GL + + I+ G+ S + G +V LP V L IP Sbjct: 550 VDASMTRKQGGLGIGLALCKQIVVRMRGKLEFLSDVNHGTDVHVYLPFQPVTAQELESIP 609 >gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR [Thermodesulfovibrio yellowstonii DSM 11347] Length = 392 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R ++ + F+A++SHEL+TP+ AI G++E + + + E K++I I Sbjct: 156 RLKQLENVRRDFVANVSHELKTPVTAIKGYAETLLDGAI--NDKENSKKFIEIIKNQADR 213 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L L+ ++L LSRIE G ++ + I L +++ +L+ +AQ+K + + ++I P + Sbjct: 214 LNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKEIPPETA- 272 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 ++AD+ M Q+++NL+ NA+KFT G V V + +G IS++D G GI + I + Sbjct: 273 IYADQYRMSQIMINLVDNAIKFTEK-GFVKVRFFKENSKGV-ISVEDTGIGIPKEHIHRI 330 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A G GLGL I + ++ HG Q I S++ +G +V ++P Sbjct: 331 GERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIP 383 >gi|15889688|ref|NP_355369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15157594|gb|AAK88154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 1131 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 162/351 (46%), Gaps = 7/351 (1%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 +A +I+ + + + A + ++ ++ A + F Sbjct: 574 GMAAAIAVTAIGGILALIAHQVGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHD 633 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + + IA + + + ++ AE N AKSR++ +SHELRTPLN Sbjct: 634 SRVVAEEESSRQNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLN 693 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 A+LG+++++E + P + I I RS HL LI+ +LD+S+IEAGR ++ + Sbjct: 694 AVLGYAQILERDETIPAP---RQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNE 750 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTA 384 I++ D + + + M + +AQ K +E + +L V DEK +RQ+++NLLSNA+KFT Sbjct: 751 INIKDFLDQVVDMFRPQAQAKGLEFRHERTAALPQYVRTDEKRLRQILVNLLSNAIKFTD 810 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 G V V + + ++ D G GIAE ++ + F +G G+GLGL I Sbjct: 811 E-GSVTFDVAYR-SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTI 868 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + + GG+ + S+ G L + V E T + Y+ Sbjct: 869 TRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKT-IRSYS 918 >gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ [Leptosphaeria maculans] Length = 2006 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 114/254 (44%), Gaps = 24/254 (9%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 1284 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NSEQLEHVNIIKASTDSLLNLIND 1339 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + + ++ E + A +K +E+ ++ + V D+ Sbjct: 1340 ILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPTMVKGDKF 1399 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT G + V + D G G E E Sbjct: 1400 RIRQVLLNVVGNAIKFTNR-GEIFVRCKMQPPDRSGLLKEHETMIRFEVVDTGQGFTEAE 1458 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI----L 472 + F Q + G GLGL I+ + HGG+ +S G L Sbjct: 1459 AKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFFFTIKFGL 1518 Query: 473 P----NTRVLNFIP 482 P +V P Sbjct: 1519 PTPEDFPKVQPSTP 1532 >gi|261251233|ref|ZP_05943807.1| sensor protein TorS [Vibrio orientalis CIP 102891] gi|260938106|gb|EEX94094.1| sensor protein TorS [Vibrio orientalis CIP 102891] Length = 959 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 163/365 (44%), Gaps = 23/365 (6%) Query: 138 TIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATAL 197 + +LI + +S + + + +++ G Sbjct: 344 VLGMVIVVLIVWKVVYVSVLKRLAEYSSALLSIAKGQLQVDVTVKGNDELAHMGQAIITA 403 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAEL--------EVAKSLSDE-------TRKRA 242 + + +S K E + + EL + A +E R A Sbjct: 404 RNTAHALKVVAESEAKAKRELQEHKEHLEELVTERTHQLQNANVRLNEEVENHARARSLA 463 Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + AKS FLA+MSHE+RTP+N +LG + +++ + Y+ I+RSG LL Sbjct: 464 EQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDAGLDS----KQGYYVDVINRSGTTLL 519 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 ++N++LD S+IEAG E+ +L +V + +L RA+EK++E+ I+ + W Sbjct: 520 AILNDVLDYSKIEAGHLEIRPIDFNLYSMVDDTKHLLDGRAKEKSLELACTIESDVDKFW 579 Query: 363 -ADEKGMRQVILNLLSNAVKFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 D + QV+ NL+ NA+KFT G ++V++ + D+G GI+E E T+ Sbjct: 580 RGDVTRISQVLNNLVGNAIKFTDRGYVDIYVSLDPDLDGNVLFEVSDSGVGISEQEQVTL 639 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 +F Q + + S G GLGL I++ I+ G+ L+ S + EG +P T V Sbjct: 640 FDAFTQATGGLSSK-GGTGLGLAISKRIVEAMNGKLLVESHVGEGSRFWFSIPLT-VGQA 697 Query: 481 IPEDN 485 + E Sbjct: 698 VEESE 702 >gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 908 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 126/265 (47%), Gaps = 12/265 (4%) Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 E E + +AE + KS FLA+MSHE+RTPLNAI+GFSE++ + + + Sbjct: 530 EKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKE 585 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 EY+ I + + LL LIN+ILDLS+IE+G E +L + E M+Q + ++ Sbjct: 586 EYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKITNPDV 645 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 E ++ D ++QV +N L+NA+K T G + + G G I ++D+ Sbjct: 646 EFQMANSGPDCWIFLDRNRLKQVWMNYLTNAIKCT-KSGHIKMGYGIERGG-IRIYVEDS 703 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI V F + QG GLGL I+++I+ GG+ S G Sbjct: 704 GVGIPIELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPDVGSTF 759 Query: 469 IAILPNTRVLNF--IPEDNHESTQY 491 A +P + P + S Q Sbjct: 760 WAWIPCEISIQEEDSPTVSQPSKQQ 784 >gi|229551250|ref|ZP_04439975.1| histidine kinase [Lactobacillus rhamnosus LMS2-1] gi|229315413|gb|EEN81386.1| histidine kinase [Lactobacillus rhamnosus LMS2-1] Length = 636 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + +++ ++ +I Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + A + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|91978537|ref|YP_571196.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91684993|gb|ABE41295.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 876 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 86/305 (28%), Positives = 135/305 (44%), Gaps = 16/305 (5%) Query: 172 VALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVA 231 A ++ +D + + +T + + E A Sbjct: 302 AATVAAKMVMREPMDELIVHVTIGGSPRLWSLTAKPMFDYNDEFAGYRGVGRDVTERRRA 361 Query: 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 ++AE EN AKS FLA MSHE+RTP+N +LG + + + + + + Sbjct: 362 --------EQAEAENRAKSGFLAMMSHEIRTPMNGVLGLANSLLETKL----DPDQQHAV 409 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 I SG +LL ++N+ILDLS++E GR E + S +V +++ A+ K + + Sbjct: 410 ATIRDSGDNLLRILNDILDLSKLEVGRLEFEQVNFSPSVLVDAVRSIVEPNARAKGLALK 469 Query: 352 QKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG-RVHVTVGWTSGRGQYIS--IKD 407 +DP L + D +RQV+LNL NAVKFT G + +T I + D Sbjct: 470 IDVDPRLPPALTGDAARIRQVLLNLAFNAVKFTDHGSVSIVLTCVKRDDAHATIEWQVTD 529 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI ++ ++ T F QG +I G GLGL I++ I+ GG + SK EG Sbjct: 530 TGIGIPPEQMGSLFTEFAQGDASINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGST 589 Query: 468 VIAIL 472 L Sbjct: 590 FRFSL 594 Score = 70.3 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 11/231 (4%) Query: 1 MYRSRKNKEKDVGLLISPTGDHLGLEYPSKMDFDREIITL----HVESLFRVSPILPLFV 56 M + R+ +E + L S G D D + L ++S+ R+ P+ Sbjct: 8 MTKVREPREDWISRLASWLRGR-GAGTLVPADIDERELRLIRAAQIQSVSRLVPVTMSIN 66 Query: 57 LLVANI----GTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLV 112 ++ A + + W AV + K + + + V Sbjct: 67 VINATLVVMVFWDTGPHAFLLAWFGAICAVAGLAMRSWHKSRRAPPREAST-NATRRMSV 125 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 + +GL W + + P I + +S A + +P A + +V+ Sbjct: 126 QALILGLIWGAMPIALFPNAAPSDQLI-IGCLVTGMMSGGAFALSTVPRAGLAYTWAMVL 184 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDD 223 + I+ + L F + + L + E + Sbjct: 185 CAAISLILCTGTSYLITIAFLMLYALFISRNLVSHGEMFFDNLRAKFELER 235 >gi|167629620|ref|YP_001680119.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592360|gb|ABZ84108.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 481 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 5/230 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A SHELRTPL+ + +VIE + L+ E ++ + D+ + L+ ++ Sbjct: 251 QREFVADASHELRTPLSILQSSIDVIEADDARNLS-EFSRQVLADMKDEVGRMTRLVGDL 309 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 L L+R ++G+ EL + L + + Q RA+ + + + + P+L V+ D + + Sbjct: 310 LTLARADSGKLELQRESFDLRPVAEQLFRTFQHRAKAQGLTMEMEGPPTLP-VFVDRERI 368 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFG 425 Q++ LL NAVK+T GG+V +++ + G + ++D G GI+ + + F Sbjct: 369 TQLLCILLDNAVKYTPEGGKVSLSLARSGGGHNDTLQVKVQDTGIGISAEDQQHIFERFY 428 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + GVGLGL IA+ I+ HGG + S +G I I+P Sbjct: 429 RADKGRSRQAGGVGLGLSIARWIVEAHGGTIRVESAPGKGSSFIVIVPAA 478 >gi|88812355|ref|ZP_01127605.1| sensor histidine kinase/response regulator GacS [Nitrococcus mobilis Nb-231] gi|88790362|gb|EAR21479.1| sensor histidine kinase/response regulator GacS [Nitrococcus mobilis Nb-231] Length = 686 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 100/419 (23%), Positives = 173/419 (41%), Gaps = 18/419 (4%) Query: 77 LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L TLA + + + + + +Y + L + P T Sbjct: 106 LGTLANHLLRVLPAGEHLQPSAAVLRIYSSTYTASSLRALPAAPLGSLEIELPVTNAARA 165 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVV-VALSTQAIMSMHVLDIS------- 188 L+AL+ + + P+ + + + + Sbjct: 166 QLEEILLPGLLALAALFCAGLLALLTAGTILRPMRRLTQQIRKFERDSLQSWAPIGCQGQ 225 Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 L + + T + + +I +E + LEV + D R+RA E + Sbjct: 226 LGQLETAVETMVTALRQRQHRFEERIHCTTSELRQTLRALEVQNAELDVARRRALEASKI 285 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS+FLA +SHE+RTP+N I+GF+E+++ + + ++++ I S +LL +IN+I Sbjct: 286 KSQFLAKVSHEIRTPINGIVGFAELLQHSPL----DAEQRDHVDTIKVSCANLLAIINDI 341 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF-QKIDPSLSSVWADEKG 367 LD S+IEAG+ E+ + D V E I +L A K +E+ + D Sbjct: 342 LDFSKIEAGKLEIDNMVFDVRDSVEEVITLLAPTAYSKGLELVQLIYADVPPKLNGDPVR 401 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTS 423 +RQ++ NLL NA+KFT GR+ V V I+I D G G+ E + + + Sbjct: 402 IRQILTNLLHNAIKFTEQ-GRIVVRVILEEESAVDATLRITINDTGIGLGENDHSKLFRA 460 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIP 482 FGQ + S G GLGL I++ ++ GG S+ ++G L + + P Sbjct: 461 FGQAGGSPGSHCSGTGLGLIISKQLVEQMGGSIGFESEPQKGSTFWFALSLQKQPSIAP 519 >gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1053 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 14/272 (5%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 +++ + +++ D++A AK+ + K + E +LAKS FL++MSH++RTP+NAI+ Sbjct: 632 QNHKTVCLVRSDVTDMLAAERAAKTELERALKLSREASLAKSDFLSAMSHDIRTPMNAIM 691 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G + + + + P+ + + I + HLLNLIN++LD+++IE + L+ I L Sbjct: 692 GMTTLAKANSGDPV---RVLDCLQKISAASGHLLNLINDVLDMNKIERAQITLNREKIYL 748 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387 D++++ ++ +A++ + + D + Q+++N+L NAVKFT GG Sbjct: 749 PDLIKQIGEIIAPQAEQAGLCCEILPGGIRNPCFYGDTLRISQILINILGNAVKFTPRGG 808 Query: 388 RVHVTVGWTSGRG------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIK-SAEQGVGL 440 V G +++D G G+A+ + + F + + S +G GL Sbjct: 809 SVRFLAEEIPGAAGSGQACYRFTVRDTGIGMAKETLDHLFEPFVR---SRAVSRVEGTGL 865 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GL I + ++ GG ++S+ +G L Sbjct: 866 GLSIVKGLVDLMGGSVSVQSEPEKGTTFFVEL 897 >gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium limosum KIST612] gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium limosum KIST612] Length = 585 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 + F+A++SHEL+TP+ I GF E I+ + + T + I + L L+N+I Sbjct: 358 RRDFVANVSHELKTPITTIRGFIETIQENHIT--DEATLGRFYSIIADESERLTRLVNDI 415 Query: 309 LDLSRIEAGRY--ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 L LS +E + E I + + +L++ A+ K IE+ + + + SV + Sbjct: 416 LILSHLENNQRSGEDKREVIGVNQEILRIFDILKMTAESKRIELRYQKEGDI-SVIINPD 474 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 RQ+++NL+ NA+K+T GGRV V+V + +G I ++D G GI E +IP + F + Sbjct: 475 DFRQMMINLVDNAIKYTDEGGRVDVSV-YENGAHFCILVEDTGCGIPEEDIPRIFERFYR 533 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + G GLGL I + I+ N+ G + S + G LP Sbjct: 534 VDKSRSKENGGTGLGLAIVKHIVQNNKGTIEVTSSVGIGTTFKVTLPK 581 >gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1017 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 10/270 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E +V + ++ AE + AK+ FLA MSHE+RTPLN ++G ++E G Sbjct: 479 HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLE----GTF 534 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N KEY+ I SGQ+LL L+N+ILDLSRIE+G+ +L +S + E + + + Sbjct: 535 LNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPM 594 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A+EK + + ++ ++ + +D +RQV+ NL+ N++KFT G++H++V Sbjct: 595 AEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK-GKIHLSVEAEKFPND 653 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD G GIAE ++ + +F Q + G GLGL I++ + G+ Sbjct: 654 KLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEIT 713 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++S++ G E + ++ IP E Sbjct: 714 VKSQVNSGSEFSLSILTEKLEYEIPAGVQE 743 >gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1017 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 10/270 (3%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 I E +V + ++ AE + AK+ FLA MSHE+RTPLN ++G ++E G Sbjct: 479 HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLE----GTF 534 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 N KEY+ I SGQ+LL L+N+ILDLSRIE+G+ +L +S + E + + + Sbjct: 535 LNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPM 594 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----S 397 A+EK + + ++ ++ + +D +RQV+ NL+ N++KFT G++H++V Sbjct: 595 AEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK-GKIHLSVEAEKFPND 653 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 +KD G GIAE ++ + +F Q + G GLGL I++ + G+ Sbjct: 654 KLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEIT 713 Query: 458 IRSKLREGVEVIAILPNTRVLNFIPEDNHE 487 ++S++ G E + ++ IP E Sbjct: 714 VKSQVNSGSEFSLSILTEKLEYEIPAGVQE 743 >gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 754 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 126/254 (49%), Gaps = 6/254 (2%) Query: 231 AKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 ++ E R RA E + AKSRFLA SHE RTPLN I+G S + L Y Sbjct: 217 SERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMS----GLLLETLLTPEQTTY 272 Query: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEI 350 + + SG LL+LI ++LD SRIEAG+ EL L D++ + +L RAQ + +EI Sbjct: 273 VKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQLEI 332 Query: 351 FQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 +D +L V D +RQV+LNL NA+KFT+ GG + V ++D G Sbjct: 333 ASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRFMVRDTG 392 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 GIA + F Q I + G GLGL I+ I+ GG+ ++SK G Sbjct: 393 IGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPDSGSTFE 452 Query: 470 AILPNTRVLNFIPE 483 ++P + PE Sbjct: 453 VLVPL-PAQDRAPE 465 >gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 867 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 138/277 (49%), Gaps = 20/277 (7%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + +L A++ ++ R+ AE+ N AK+ FLA HE+RTPL AILGF+EV+ + Sbjct: 284 LTDLRRAQAELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLHERLGH---D 340 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E + I +G HL L+N+ LDLS+IE+G+ EL+ ++I ++ E + Q +AQ Sbjct: 341 PQSAEALEAIQSAGSHLKMLLNDFLDLSKIESGKLELAPTSIDPWELAVEVATINQGQAQ 400 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV---------- 393 K I + + + S V D +RQV+ NL+ NA+KF+ GG V +++ Sbjct: 401 AKGIRLGVEANASTPLLVHVDTTRLRQVLFNLVGNAIKFS-QGGDVTISLIGSEPNASDS 459 Query: 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA--IKSAEQGVGLGLPIAQSIMAN 451 ++D GPG+ ++ + F Q A + G GLGL I++S++ Sbjct: 460 DTDGRSTLVWQVRDQGPGMTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVEL 519 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 GG + S G V LP + P NH S Sbjct: 520 MGGTIQVVSHPGRGTTVQFELP---IDPATPRRNHPS 553 >gi|331238274|ref|XP_003331792.1| sensory/regulatory protein rpfC [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310782|gb|EFP87373.1| sensory/regulatory protein rpfC [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1570 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 138/262 (52%), Gaps = 11/262 (4%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 I + Q+ + ++ +L A + + ++ AE +LAKS+FLA+ SHE+RTPLNAI+G Sbjct: 1033 DIRALQSNINTMVTKLRTAFESNVKAKEAAEAHSLAKSQFLANTSHEIRTPLNAIIG--- 1089 Query: 273 VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 + +T+G +E + + LL +IN+ILD+++IEAGR L SL +++ Sbjct: 1090 -LTFDTLGSNLTREQRENLNLVRGQADALLRIINDILDITKIEAGRMALERCTFSLREVI 1148 Query: 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 E + L A KN+++F +I P++ V D + QV+ NL+ N+ KFT G + + Sbjct: 1149 FEALTSLAFGAAAKNLDVFLEIHPAVPDLVVGDGSRLGQVVKNLVGNSQKFT-TSGSITL 1207 Query: 392 TVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQ 446 T + D G GI E ++ + SF Q ++ G GLGL I++ Sbjct: 1208 TAHLMGTDPEGRWRVEFHVIDTGIGIEEDKLQRIFDSFMQADGSVTRKYGGTGLGLTISR 1267 Query: 447 SIMANHGGQFLIRSKLREGVEV 468 +++ GG + S++ +G + Sbjct: 1268 NLVQMMGGHLDVESEVGKGSDF 1289 >gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 589 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + LE + + RA+ N AK+ FLA++SHELRTPL +I GF+E++E Sbjct: 341 VRRLEASNVALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKRI----EQ 396 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +K+ G I R+ +HL L+ +ILD ++IEAG + + +++ +VR + A Sbjct: 397 PKFKDQAGMIRRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAA 456 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 EK +E+ +I + + DE ++QV+ NLLSNA+KFT GG V + V + + + Sbjct: 457 EKGLELRVQIADDVPETLLTDELRLKQVLNNLLSNAMKFT-AGGHVAIEVERDATQ-LRL 514 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D GPGI + + F Q + G GLGL +++S+ GG + S Sbjct: 515 HVVDTGPGIPAEQHELIFERFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPG 574 Query: 464 EGVEVIAILPN 474 EG LP Sbjct: 575 EGARFTLTLPL 585 >gi|241663921|ref|YP_002982281.1| histidine kinase [Ralstonia pickettii 12D] gi|240865948|gb|ACS63609.1| histidine kinase [Ralstonia pickettii 12D] Length = 610 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 96/478 (20%), Positives = 185/478 (38%), Gaps = 23/478 (4%) Query: 22 HLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQN--PIFPMWSLIT 79 GL + ++ D L I VL + ++ + P W LI Sbjct: 11 KFGLASRAPLELDARAKLLAAVHRGAPMGIAASVVLPALTVAAFWDASNRPGLLGWCLIM 70 Query: 80 LAVYA--ANLSLGKKVMNSDIKIGEV-YVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEY 136 L + A G + + + + W + V G+ W + + + E+ Sbjct: 71 LCLTASGLRFYFGYRYDLTRMTLAAHTRKWWTGMHVMSAVGGVAWGCSAGLYLMSPSLEF 130 Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLD-ISLAGMLAT 195 ++ ++I ++ +A+ + + L ++A + L G+L Sbjct: 131 SSLL--MIVIIGVAAAAVLSQAPVPSSLLILGTGILAPHFLLAEQAFPGHGLYLRGVLLF 188 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 + T ++ + V+ + + E L A+ DE ++RA + KSRFLA+ Sbjct: 189 FAALLTRHAVNIHNTLVREIQLENESRQL------ARRYQDE-KQRALSASEEKSRFLAA 241 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 SH+LR P++AI+ E + +E+ + + + L +LDLS++E Sbjct: 242 ASHDLRQPVHAIVLLVEALRAR----NQSESLAPLVEQLASGAATIDLLFRSLLDLSKLE 297 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 + + + + L +++ E + A+ K + + +I P A+ +R+ + NL Sbjct: 298 SRKTSPTLEPVDLGEVITEVVQQFMPDARAKGLTLAARIPPLPVYGMAEPVLLRRALFNL 357 Query: 376 LSNAVKFTAIGGR-VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L NA+++T GG V + V + I + D G GIA + +++ Q + Sbjct: 358 LQNALRYTERGGVMVALRVRQ---KHLRIEVWDTGIGIAPEHQKDIFSTYYQVENPERDP 414 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYK 492 QG+GLGL I + + G F +RS G L P + K Sbjct: 415 SQGLGLGLSIYKECVRLLRGTFGVRSVPGRGSMFWMALRPVPAEIKAPLATQPRAEQK 472 >gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] Length = 927 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 8/263 (3%) Query: 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGP 281 D+ AE V + + A N AKS FL+ MSH++RTPLNAI+G S + + Sbjct: 388 DEQRAEQAVQEQVLKNALSAARMANQAKSDFLSRMSHDIRTPLNAIIGMSTI---SQLKM 444 Query: 282 LNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQL 341 E + + I S ++LL+LIN+ILD+SRIE+G+ LS ++++ ++ Sbjct: 445 KEPEVLADCLSKIDVSSRYLLSLINDILDMSRIESGKMALSSERFDFVELIGSINTIVYP 504 Query: 342 RAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVG--WTSG 398 +A + SL + D + Q+++NLLSNAVKFT GG++ V + S Sbjct: 505 QAVAGKLAYQIHQHESLDRYYEGDTLRINQILMNLLSNAVKFTPEGGKIDVHISESRRSN 564 Query: 399 RGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 YI + D G G++ + + F Q + + + G GLGL I S++ GG Sbjct: 565 GFAYIEFRVSDTGIGMSSDFMKRLYLPFEQETDDMARNKVGSGLGLSIVYSLVQIMGGTI 624 Query: 457 LIRSKLREGVEVIAILPNTRVLN 479 +S+ G ++P Sbjct: 625 DAKSEKNRGTTFTVVIPLRLAAP 647 >gi|212638129|ref|YP_002314649.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559609|gb|ACJ32664.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 474 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 5/238 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++ + +F+A SHELRTPL+ I E ++++ ++ ++ I + + + Sbjct: 239 QDAYNRQRQFVADASHELRTPLSVIYSSVEALKMDA-SLTSDPFSQKTIERLGDETKRMT 297 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 LIN++L L+R + + ++ L + LQ A +KNI + + V Sbjct: 298 KLINDLLTLARTDDAKLQIERKPFELRACAERTLQSLQELANKKNITLQFHASEQIEFV- 356 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW---TSGRGQYISIKDNGPGIAEGEIPT 419 DE Q++ LL NA+K+T GG V +++ + +S+ D G GIA +P Sbjct: 357 GDEDKCTQLLYILLDNAIKYTPEGGTVSLSLAQHVIKQRKVVTMSVADTGIGIAPEHLPR 416 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F + A G GLGL IA+ I+ H G + S++ +G PN R Sbjct: 417 IFDRFYRADKARTRQIGGHGLGLSIAKWIVEAHEGNIHVESEVGKGTTFTITFPNERA 474 >gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 782 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 104/284 (36%), Positives = 156/284 (54%), Gaps = 2/284 (0%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 L + + + + +L ++RAE + AK+ FLA+MSHELRTPL Sbjct: 499 RRLMAVIDDLSIARRDAERKAVQLTEMNQNYAAEKERAETASSAKTTFLANMSHELRTPL 558 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILGFSE++ T GP+ Y EY DIH+SG +LL LIN+ILD+++IEAGR L+ Sbjct: 559 NAILGFSEIMRQGTFGPIGCPKYGEYAEDIHQSGHYLLKLINDILDMAKIEAGRLVLNHE 618 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA 384 + L +I E +++++A +K I + + + + D + +Q++LNLLSNAVKFT Sbjct: 619 TVDLSEIATETGKIIEVQADQKAICLDADVPERM-ELTVDRRATKQIVLNLLSNAVKFTD 677 Query: 385 IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPI 444 GG V + + T G I+I DNG GI + ++ F Q + +G GLGL I Sbjct: 678 NGGTVKMKL-RTVGDAALITIADNGMGIPRAALKSLGKPFEQIENELTRTNKGTGLGLAI 736 Query: 445 AQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 A+S++A GG+ I S++ EG V LP T + + Sbjct: 737 ARSLVALQGGRMRISSQVGEGTIVAIRLPLTPAPAQTEALDTAA 780 >gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 571 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 124/268 (46%), Gaps = 10/268 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 ++ ++ AE + E + ++ AE + AKS FLASMSHE+RTP+N +L Sbjct: 142 RNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTPMNGVL 201 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 G ++ + +E +EY+ S + LL LIN+ILD S+IEAG EL L Sbjct: 202 GMLDLALDTPL----DEEQREYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQVFRL 257 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGG 387 + M RA+EK + + + + D +RQV++NLL NA+KFT G Sbjct: 258 RKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDPMRLRQVLVNLLDNALKFTEA-G 316 Query: 388 RVHVTVGWT----SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 RV + V S+ D+GPGI + + F Q ++ +G GLGL Sbjct: 317 RVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFVQADGSLSRRHKGTGLGLA 376 Query: 444 IAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + + GG + S +G Sbjct: 377 ICKRLALLMGGDIRVDSAPGQGSTFHFT 404 >gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 810 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 13/283 (4%) Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + D L + + R+ AE N AKS FLA+MSHE+RTPLNAI+G + ++ Sbjct: 408 TARIDAENALRQNQQDLVQARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVER- 466 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 L+ KE D + +LL++I+++LD+S+IEAG+ E+ ++ + M Sbjct: 467 ---LDAGELKELAKDSMAAANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERM 523 Query: 339 LQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 +EK + + SL + +D ++Q+ +NLLSNA+KFT G + + + ++ Sbjct: 524 FGAIVREKGLRFDVSLGASLPGLLLSDPARIQQIGVNLLSNALKFTEQ-GTIRLRLTGST 582 Query: 398 GRGQYIS----IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 + + D+G GI I V + F Q ++ G GLGL I++ + G Sbjct: 583 LDDSTVQLDLIVSDSGKGILAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLG 642 Query: 454 GQFLIRSKLREGVEVIAILP---NTRVLNFIPEDNHESTQYKC 493 G + S++ EG +P + RV + + + Q C Sbjct: 643 GSIKVESRIGEGSTFTCSIPCQISKRVTSELDSAARDEGQKIC 685 >gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii] Length = 1425 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 180/452 (39%), Gaps = 30/452 (6%) Query: 58 LVANIGTWFTQNPIFPM----WSLITLAVYAANLSLGKKVMNSDIKIG-EVYVWRIWLLV 112 +A + + P+ W + L M + I + +++ ++ Sbjct: 110 FLAGFSDYMSWKGYAPIVRDSWGQGFQLLRTVMWLLTTPAMVYLLSIISDFSRLKVYSVM 169 Query: 113 GQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVV 172 + + + +L + + Y A L A + ++ + V Sbjct: 170 LADVLMITFGILAFLAYNKV--MSILFYMVAWCLFAYVVHSMWSMFHASIAEARHDSSRV 227 Query: 173 ALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFK-------------SNVKILSCQA 219 +L + ++ + + + T S + Sbjct: 228 SLEVLRLFAVGLWFTFPVIWIVVKMGLVDIRTEEWTWCACDFLGKVMFSSSLLHGNFLTI 287 Query: 220 EKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETM 279 E+ LIA V + + + ++ K RF++SMSHELRTPLN I+G S+ + + + Sbjct: 288 EQRRLIAMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSC 347 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 G +N++ K I I SG LLNLIN+ILD + + G+ + ++L +V + I + Sbjct: 348 GEINDQALKT-ITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLC 406 Query: 340 QLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR 399 Q A+ +++ + ++ V D + QV NL+ N+ KFT G + ++ Sbjct: 407 QPLAKR-GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHS-GNISISAA-VKDD 463 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 +++ D G GI E + + +F Q +++ G GLGL + + ++ HGG+ ++ Sbjct: 464 EVEVAVADTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVK 523 Query: 460 SKLREGVEVIAIL------PNTRVLNFIPEDN 485 S+ +G L PN P ++ Sbjct: 524 SRENQGTTFYFTLKIHSEHPNEGQPQMTPTES 555 >gi|83589978|ref|YP_429987.1| periplasmic sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572892|gb|ABC19444.1| periplasmic sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 469 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 11/295 (3%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSC-----QAEKDDLIAELEVAKSLSDETR 239 L LA + T + + + E L A + Sbjct: 178 LGYILARTALRPIDRLTQVAEQIGEGKDLDQRVPYQGPMDEVGRLAATFNAMLARLQRAY 237 Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 R EE A+ RF+A SHELRTPL I G +++ + E + DI + Sbjct: 238 TRLEEAYSAQRRFVADASHELRTPLTTIRGNVDLLRK--VQGQGEAWQDEALADIASEAE 295 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 + L+N++L L+R +AG+ E+ + ++ +++E L I + + Sbjct: 296 RMSRLVNDLLTLARADAGQ-EIKREPLEILPLLQEVARQAPLLGTATFTAIGLENLAGV- 353 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 + + ++Q+ LL NA K+T G++ + V + I ++D GPGI ++ Sbjct: 354 HIMGNRDYLKQLFFILLDNAFKYTPSEGKIDLIVNVEPQQRLIIKVRDTGPGIPPRDLEH 413 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + S +G GLGL IA+ I+ H G + S + +G +P Sbjct: 414 IFERFYRADATRSS--EGTGLGLAIARWIVEQHQGHIGVESTVGKGTTFTITIPL 466 >gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 938 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 13/266 (4%) Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + L+ + + ++ AEE + AKS FLA MSHE+RTPLN +LG +E+ E T+ Sbjct: 534 RDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESATL--- 590 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E + ++ SG HLL LIN+ILDLSRIEAG + L VR + + Sbjct: 591 -EERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVL 649 Query: 343 AQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHV----TVGWTS 397 A++K + + ++D + + D +RQ+++NL+ NA+KFT GG + + Sbjct: 650 AEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRAVG 709 Query: 398 GRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S+ D G GI + T+ +F + + + G GLGL I + ++ GG+ Sbjct: 710 QGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQV--GTGLGLSICRRLVEMMGGR 767 Query: 456 FLIRSKLREGVEVIAILPNTRVLNFI 481 + S++ G LP + + Sbjct: 768 IWLESEVGVGSTFHVSLPFGQQVASA 793 >gi|300021814|ref|YP_003754425.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523635|gb|ADJ22104.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 294 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 138/244 (56%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 A+ R E + KS F+A+MSHEL+TPLN ++GFS+++ L ++ E Sbjct: 30 RARVAEHSARIETELASKVKSEFIANMSHELKTPLNTVIGFSKLLTQHQERRLPDKEIVE 89 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 Y I+ + HLL++IN+ILD+S++++G+Y + I+L DI+ + I +++ +I+ Sbjct: 90 YATLINDAAGHLLSVINDILDISKLQSGKYAIDSREINLRDILADSIDAFHHQSRVGDID 149 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + I L + D ++Q+ N+LSNA+KFT G V V T+ G ++I+D+G Sbjct: 150 VDVAIAADLPLIRGDAVKLKQIFTNVLSNAIKFTPADGTVAVKAQRTADHGAIVAIRDSG 209 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 G++ EI + FGQ +G GLGLPIA++++ HGG I S+ EG EV+ Sbjct: 210 VGMSPDEIDVAMAPFGQVDGGRSRWREGAGLGLPIAKALVELHGGALYIASQQNEGTEVV 269 Query: 470 AILP 473 P Sbjct: 270 ITFP 273 >gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 948 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 7/266 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + ++ D ++QVI NLLSNA+KFT I G + + V +G I ++D Sbjct: 567 LYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVCR-AGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + ++ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEPGMGSQF 684 Query: 469 IAILPNTRVLNFIPEDNHESTQYKCY 494 +P + +C+ Sbjct: 685 TIRIPLYSAQYPAKTTVDGLSDKRCW 710 >gi|191639754|ref|YP_001988920.1| Sensor protein [Lactobacillus casei BL23] gi|190714056|emb|CAQ68062.1| Sensor protein [Lactobacillus casei BL23] Length = 636 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 107/255 (41%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + ++ ++ +I Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPRFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKVRSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|110679868|ref|YP_682875.1| phosphate regulon sensor protein, putative [Roseobacter denitrificans OCh 114] gi|109455984|gb|ABG32189.1| phosphate regulon sensor protein, putative [Roseobacter denitrificans OCh 114] Length = 347 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 242 AEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 E+ + + F+A++SHELRTPL A++GF E + + ++ + + Sbjct: 106 LEQADQMRRDFVANVSHELRTPLTALMGFIETLR--GPAREDAAARDRFLDIMEGEAGRM 163 Query: 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV 361 L+ ++L LSR+E + + ++L D+V+ L A + ++ + + + Sbjct: 164 NRLVGDLLSLSRVEGNQRVRPQDRVNLSDVVQSVARTLAPLANDTSVVLECDLPQQPVIL 223 Query: 362 WADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIAEG 415 D + QVI NL+ NAVK+ GGRV + + + G IS+ D GPGI Sbjct: 224 IGDADQLMQVITNLVENAVKYGGSGGRVAIKLTEVARDTSLRAPGVLISVTDFGPGIDPV 283 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 +P + F + A G GLGL I + I+ H G+ I S+L +G +LP Sbjct: 284 HLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIDSELGQGSTFTVVLPL 342 >gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222] gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222] Length = 880 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 10/270 (3%) Query: 208 FKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAI 267 + N ++ + ++ ++ A N AKS FLA+MSHE+RTPLN I Sbjct: 347 IQGNDELAEFTETLNRVMERNYHHNKELIIAKEDAISANKAKSVFLANMSHEIRTPLNGI 406 Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 +G +E++ + + +E + DI S LL L+N+ILDLS+IE+G LS Sbjct: 407 IGMAEILSQSQL----SANQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNAD 462 Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIG 386 L + V + + ++ +A K+IE+ ID + ++ DE +RQV+ NLLSNA+KFT+ Sbjct: 463 LREAVYDSVSVILSKAISKDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSK- 521 Query: 387 GRVHVTVGWTS----GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 G + + +T S+ D G GI ++ ++ F Q +I G GLGL Sbjct: 522 GTITTDIAYTPMSLGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGL 581 Query: 443 PIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 I + ++ GG RS G L Sbjct: 582 AICRQLVDLMGGYITARSVKGGGSTFTFCL 611 >gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 159/376 (42%), Gaps = 23/376 (6%) Query: 124 LTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMH 183 L T+Y + I L + P F + ++ + Sbjct: 86 FALAGMLEAYERTSTLYSFSCCGICLERQTPLLYSYPERYFTYLQQFKPTIVEILVVPLL 145 Query: 184 VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE 243 + + L + + + +++++ A A+ ++E+ +R + Sbjct: 146 IANQPLGTIWIVSHDE----HRQFDREDLRLMKSLANFTASALYNSNARQAAEESARREQ 201 Query: 244 EEN--------------LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 K FLA +SHELR+PLN ILG++++++ + + Sbjct: 202 AARAVSEAAQNAAEQANRLKDEFLAVLSHELRSPLNPILGWAKLLQTRKL---DEAKTAY 258 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + I R+ + L+ ++LD+SRI + L S++ L ++ + ++L AQ K+IE Sbjct: 259 ALATIERNAKLQSQLMEDLLDVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIE 318 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNG 409 + + +P++ V D ++QV+ NLLSNAVKFT GG+V + + + Q I + D G Sbjct: 319 LKTEFEPNIGQVLGDPSRLQQVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQ-IQVSDTG 377 Query: 410 PGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEV 468 GI +P V F Q G+GLGL IA+ I+ HGG S+ +G Sbjct: 378 KGINPEFLPHVFDYFRQADNTTTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATF 437 Query: 469 IAILPNTRVLNFIPED 484 +LP V ED Sbjct: 438 TVLLPIKSVEPQTSED 453 >gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] Length = 565 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 8/296 (2%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ AL + ++ L + ++A + + E+RKRAEE A Sbjct: 148 VIVGALIVQVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRD 207 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A ++HELRTPLN +LG +E+I + + +E + ++ +SG+ L +IN++LD Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSN----SQREIVNNLSQSGEFLRTIINDLLDY 263 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+I AG EL +L D+ + RA EK I+ + + + D + + Q Sbjct: 264 SKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQ 323 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 + +NL+ NA+KFT G V V + W + + S++D+G GIA+ I T+ F Q + Sbjct: 324 LFVNLIGNAIKFTDQ-GHVSVEIKWLNDQFI-FSVEDSGVGIAQSAIKTLFEPFTQADNS 381 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +G GLGL I + + A G + S + G LP +V++ + E + Sbjct: 382 SSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPL-QVVDTLAERDS 436 >gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 111/472 (23%), Positives = 179/472 (37%), Gaps = 37/472 (7%) Query: 46 FRVSPILPLFVLLVANIGTWFTQNPIFP-------MWSLITLAVYAANLSLGKKVMNSDI 98 + ++LL W +P W + + + + ++ Sbjct: 20 LIYAAFASAWILLSDKAVEWLFSSPHSITLAATLKGWVFVAVTSVVLYVLVRRQTERERQ 79 Query: 99 KIGEVY------VWRIWLLVGQIAIGLC--WTLLTLVEPGTWTPEYLTIYKS-------- 142 E LL G AIG W+ L G+WT E I+ Sbjct: 80 TRAERRKAEEALRAERELLAGMSAIGHIGGWSFDPLTHEGSWTEEVARIFDLDPSHPFDM 139 Query: 143 ATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTY 202 AT L + A + + +S G+ Sbjct: 140 ATGLSCFEGESRQRIDAAIAAACTLGTRYDIELVLKSPKGRIKSVSTVGIPEMQNGRVVR 199 Query: 203 ITYHLFKSNVK---ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 + +L + + +D L + DE R RAE N AKS FLA+MSHE Sbjct: 200 VRGYLQDLSEQKRLTQELADYRDHLEDLVRKRTVQLDEARARAEAANRAKSSFLANMSHE 259 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 +RTPLNAILG + ++ T+ + + I I + HLL LI+++LDLS++EAGR Sbjct: 260 IRTPLNAILGLARLLRRSTL----DAQQADRIAKIDDAAHHLLGLISDVLDLSKVEAGRQ 315 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 L L ++ + + +A K + + + P+ + D +RQ +LN ++NA Sbjct: 316 ALDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLRQALLNYMANA 375 Query: 380 VKFTAIGGRVHVTVGWTSGRGQ----YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAE 435 VKFT G V V + + + ++D+G GIA +P + F QG + Sbjct: 376 VKFTPT-GWVRFDVQCEAAGERAVRLHFDVRDSGIGIAPEHLPRLFNDFEQGDKSTTRRF 434 Query: 436 QGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI--AILPNTRVLNFIPEDN 485 G GLGL + +S++ GG + S +G LP + P Sbjct: 435 GGTGLGLAVTRSLVELMGGSVGVDSAPGQGSRFWLHVTLPRGVAPSPAPSPT 486 >gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 586 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 153/339 (45%), Gaps = 20/339 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217 + + ++ L T I++ +L G+++ FF I L KS +++ Sbjct: 1 MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L + + E+ N KS +A++SHELRTPLN I+G S ++ Sbjct: 61 VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + +EY+ I+ S L ++ ++I+DL +I++ R EL I ++ + Sbjct: 114 EL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L A++ I+ L + ++ D + Q++ NL+SNAVKFT GG ++++V Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S+KD G GI + E V F Q + + QG G+GL I++ I GG Sbjct: 230 DNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 + S++ +G + P + +S + +A Sbjct: 290 TLHSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322 >gi|229172039|ref|ZP_04299604.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3] gi|228611382|gb|EEK68639.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3] Length = 466 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITRPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIHISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIVITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIETEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGHGTTVSIKL 457 >gi|167761523|ref|ZP_02433650.1| hypothetical protein CLOSCI_03934 [Clostridium scindens ATCC 35704] gi|167661189|gb|EDS05319.1| hypothetical protein CLOSCI_03934 [Clostridium scindens ATCC 35704] Length = 436 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 7/310 (2%) Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD 222 V V A T + + I++ +L + + + N L E D Sbjct: 134 VLRVSKTVDTAFFTAIRILPAMGVIAVMMLLIAWILARWQVARLIRPINELDLDNPMEND 193 Query: 223 DLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPL 282 + S+ + +++ N+ K F A++SHEL+TPL +I G++E+++ + P Sbjct: 194 VYEELTPLLMSIDRQNKEKDAIANMRK-EFSANVSHELKTPLTSISGYAEIMKDGLVKP- 251 Query: 283 NNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLR 342 E K++ I+ L+ L+ +I+ LSR++ G+ EL + + L + RE L + Sbjct: 252 --EDMKKFSERIYNEASRLITLVEDIIKLSRLDEGKVELEKEEVDLYQLAREVCSRLAPQ 309 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 A ++I I + + + +++ N+ NA+K+ GG + V VG T + Sbjct: 310 ANARDIRIEVTGES--VVYRGIRQILDEMVYNICENAIKYNKDGGTLSVWVGSTLKGKKI 367 Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL 462 I + D G GI + + F + + G GLGL I + H + S++ Sbjct: 368 I-VTDTGIGIPADQQERIFERFYRVDKSHSKESGGTGLGLSIVKHGAMIHDADIRVESEV 426 Query: 463 REGVEVIAIL 472 +G + Sbjct: 427 GKGTRMELTF 436 >gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 976 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 9/354 (2%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 ++ + + + LL L + L Y + +M + Sbjct: 558 VLPRFPRHYLHTRLAQYLGLLTILVAGSSGALALIYNQVAHGLIDQSPEAHHLLMLAFLK 617 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKD-DLIAELEVAKSLSDETRKRAEE 244 + A L+++ +T + + Q I E + ++ +E Sbjct: 618 AFLTVCVFAGVLAWWVVLTRESRRVAQEESERQTSLLIQEIDAHEKTDQALQKAKEASEA 677 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 N AKSR++ +SHELRTPLN+ILGF+++++ +T P +++ + I RS HLL+L Sbjct: 678 ANAAKSRYITGLSHELRTPLNSILGFTQILQRDTTTP---PHHQDPLATIMRSSSHLLSL 734 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWA 363 IN +LD+++IEAG+ +L + I + + + M AQEKN+ +++ + V Sbjct: 735 INGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKMFASTAQEKNLGFRLELEGRMPMVVRG 794 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 DEK +RQ+++NLL NAV FT G V + V + I D G GIA +I + Sbjct: 795 DEKRVRQILINLLGNAVNFTDS-GEVVLRVSYRRE-TAIFDIVDTGIGIAPEQIERIFQP 852 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 F +G GVGLGL I + + A GG + S EG L + V Sbjct: 853 FERGGQTRHDN--GVGLGLTITRMLTALMGGALSVSSTPGEGTHFKVRLFLSEV 904 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 9/280 (3%) Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE---EENLAKSRFL 253 L + + + + A+ IA +E R+RAE E + AK+ F Sbjct: 300 LGVLVAVASPRRRLDDRYRDFFAQITGQIATAIANARSYEEERRRAEQLAELDRAKTVFF 359 Query: 254 ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 +++SHE RTPL +LG E E + + ++ + IHR+ L L+N +LD SR Sbjct: 360 SNVSHEFRTPLTLMLGPVE----EALQATQDAQQRDRLELIHRNALRLQKLVNTLLDFSR 415 Query: 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVIL 373 IEAGR E L + + + + + + P + D + +++L Sbjct: 416 IEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLPEPTYVDREMWEKIVL 475 Query: 374 NLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKS 433 NLLSNA K+T G + V + + + + ++D G GI E+P + F + A Sbjct: 476 NLLSNAFKYTFE-GEIAVILRSRNEQ-IELEVRDTGIGIPAEELPQIFERFHRVQGARGR 533 Query: 434 AEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 +G G+GL + Q ++ H G S + +G I +P Sbjct: 534 TYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIP 573 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 8/246 (3%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 N K FLA +SHELR+PLN ILG+S +++ + + P + + I R+ + LI Sbjct: 919 NRVKDEFLAIVSHELRSPLNPILGWSTLLQTQKLNP---AKTAQALNAIARNARLQAELI 975 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++LDLSRI G+ L+ L ++ + ++L A+ K+I+I +P + V D Sbjct: 976 EDLLDLSRILRGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDS 1035 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++QV+ NLLSNA+KFT GG V + + + Q I + D G GI +P + F Sbjct: 1036 SRLQQVMWNLLSNAIKFTPEGGLVDIQLERCGAQAQII-VSDTGKGIDPDFLPYIFEYFR 1094 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS-KLREGVEVIAILPNTRVLNFIPED 484 Q + A G+GLGL I ++ HGG S +G LP + PE Sbjct: 1095 QENSATTRKFGGLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPL---MQSSPEI 1151 Query: 485 NHESTQ 490 N +S Q Sbjct: 1152 NEDSKQ 1157 >gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Bacteroides xylanisolvens XB1A] Length = 754 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I +++ + + R AE+ L K FLA+MSHE+RTPLN+I+GF+ ++ LE L++ Sbjct: 509 IQDIKDREEELEAARLLAEKAEL-KQSFLANMSHEIRTPLNSIVGFANILALE--DGLSS 565 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 +EYI I+++ + LL LIN+IL+LSRIE+G S + +++ + + Q+ Sbjct: 566 AEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIA 625 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-RGQYI 403 ++E +++D + + D + + QV+ N L+NA KFT G + + + I Sbjct: 626 -PHLEFLKEVDDTPLEINVDRERLIQVLTNFLNNAGKFTET-GYIKLGYSYLPDEGNVQI 683 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++D G GI E + + F + QG GLGL I Q I+ GG+ ++S++ Sbjct: 684 YVEDTGRGIPREEQRMIFSRFYK----QNEFSQGAGLGLSICQVIIEKLGGKIELKSEVG 739 Query: 464 EGVEVIAILPNTRV 477 +G ILP V Sbjct: 740 KGSRFTVILPCRVV 753 >gi|295106470|emb|CBL04013.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 552 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 144/351 (41%), Gaps = 18/351 (5%) Query: 136 YLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLAT 195 Y + +++ F + L+F + ++ H + Sbjct: 211 YFLFITLLIGAVVYAVTTFFVFRPLNRMKLAFTEMGEGKLAVSLDDAHAAREV-----SR 265 Query: 196 ALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEEN-------LA 248 + F + L + L Q E EL A ++ R E N Sbjct: 266 LIERFNSMAAELHATYDH-LEDQVESR--TDELRRANVALEQQRDALERLNEKLAEETQF 322 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 KS L+ ++HELRTPL +I+ F+++ P + E+ + +I ++ Q LL +IN++ Sbjct: 323 KSDLLSMVNHELRTPLTSIITFAQI--SREACPPDRESERHSWEEIEKNSQILLTMINDM 380 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD++R +AG ++ + L DIV + A++ + ++ + V D + Sbjct: 381 LDIARSDAGSVHVACEPMDLGDIVSSVRGTMTPLARKYCVAFRTRVASDVPLVNGDFEKT 440 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG-QYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++++ NL SNA+KFT GG V + V +G G + + D+G GIA + + F Q Sbjct: 441 QRMLENLASNAIKFTPDGGTVELRVDLDAGNGSVRLCMADDGIGIAPEDHERIFERFFQV 500 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 G GLGL + + A G + S L G +P ++ Sbjct: 501 DSTSTRKYNGSGLGLALVREYAAVQGFAVSVESALGRGSTFTITIPPDAIV 551 >gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579] gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134] gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264] gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407] gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185] gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15] gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4] gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550] gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876] gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171] gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579] gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134] gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264] gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876] gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550] gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4] gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15] gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185] gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407] gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171] gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar chinensis CT-43] Length = 613 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 443 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 444 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 502 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 503 LYNIISNALKYSPEGGTVTYRL-RDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 605 >gi|108810018|ref|YP_653934.1| two-component sensor/regulator [Yersinia pestis Antiqua] gi|108813573|ref|YP_649340.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|145600962|ref|YP_001165038.1| two-component sensor/regulator [Yersinia pestis Pestoides F] gi|150260697|ref|ZP_01917425.1| two-component sensor/regulator [Yersinia pestis CA88-4125] gi|165936543|ref|ZP_02225111.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. IP275] gi|166010515|ref|ZP_02231413.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213929|ref|ZP_02239964.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167426128|ref|ZP_02317881.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469426|ref|ZP_02334130.1| two-component sensor/regulator [Yersinia pestis FV-1] gi|218927461|ref|YP_002345336.1| two-component sensor/regulator [Yersinia pestis CO92] gi|229836507|ref|ZP_04456673.1| two-component sensor/regulator [Yersinia pestis Pestoides A] gi|229840116|ref|ZP_04460275.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842197|ref|ZP_04462352.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229904062|ref|ZP_04519175.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|270488949|ref|ZP_06206023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294502331|ref|YP_003566393.1| two-component sensor/regulator [Yersinia pestis Z176003] gi|108777221|gb|ABG19740.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|108781931|gb|ABG15989.1| two-component sensor/regulator [Yersinia pestis Antiqua] gi|115346072|emb|CAL18940.1| two-component sensor/regulator [Yersinia pestis CO92] gi|145212658|gb|ABP42065.1| two-component sensor/regulator [Yersinia pestis Pestoides F] gi|149290105|gb|EDM40182.1| two-component sensor/regulator [Yersinia pestis CA88-4125] gi|165915659|gb|EDR34268.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. IP275] gi|165990605|gb|EDR42906.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204904|gb|EDR49384.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167054839|gb|EDR64641.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679832|gb|EEO75935.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|229690507|gb|EEO82561.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696482|gb|EEO86529.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706191|gb|EEO92199.1| two-component sensor/regulator [Yersinia pestis Pestoides A] gi|262360411|gb|ACY57132.1| two-component sensor/regulator [Yersinia pestis D106004] gi|262364361|gb|ACY60918.1| two-component sensor/regulator [Yersinia pestis D182038] gi|270337453|gb|EFA48230.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294352790|gb|ADE63131.1| two-component sensor/regulator [Yersinia pestis Z176003] gi|320013880|gb|ADV97451.1| two-component sensor/regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 939 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 17/368 (4%) Query: 116 AIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALS 175 G W L + + E L + L++ + + P+ ++ Sbjct: 271 LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN 330 Query: 176 TQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 ++ L L + + + L+ Q + ++ +++ Sbjct: 331 IIGATGPQAMEPRLPINRIDELGHIA----RAYNNLLDTLNEQYDTLEM--KVKERTLAL 384 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E ++ AE+ N KS L ++SHE+RTPLN LG E+++ + H Sbjct: 385 AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAG----QMRLAETAH 440 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 + LL +IN +LD SRIE+G+ LS +L+ ++ + ++ + +A K++ + I Sbjct: 441 QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS 500 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ + D +RQ+++NLL NAVKFT GR+ + V + +++D G GI Sbjct: 501 ANIPLELELDTLRLRQILVNLLGNAVKFTPQ-GRIQLRVRRQ-NQTLCFTVEDTGCGIDV 558 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 T+ F Q EQG GLGL IA ++ GG + S+ +G LP Sbjct: 559 QHQQTIFQPFMQ----TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPF 614 Query: 475 TRVLNFIP 482 + +P Sbjct: 615 NAITPPMP 622 >gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 562 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 L +++F+A++SHEL+TPL +I GF+E + +NET ++++ I + + L L Sbjct: 341 LELMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNIIDKESERLSRL 396 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 IN+IL LS IE+ I+ + I M++ A K I + D + + D Sbjct: 397 INDILVLSSIESN-ISTQNDEFLPKSIIEDVINMVRKLANNKAINLEF-YDDNQELILGD 454 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 + Q+ LNL+ NA+K++ G V V + ++ Y+ I DNG GI + ++P + F Sbjct: 455 KDKFYQLTLNLVENAIKYSENGSNVKV-ISYSKQGNYYLEISDNGLGIPKEDLPRIFERF 513 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + + + G GLGL I + I+ G ++S L EG + Sbjct: 514 YRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFKVRI 559 >gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 686 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 10/285 (3%) Query: 191 GMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKS 250 G + + I ++F + ++ Q + + ++ + A+ N AK+ Sbjct: 254 GWTPVSQWILSIIASYIFSLLIAMVFYQISSKKHRE--KQYAAELEKAAELAKSANEAKT 311 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 RFL +MSH++RTP+NAI+GFS ++E N E KEY+G I SG L+ +IN+IL+ Sbjct: 312 RFLFNMSHDIRTPMNAIIGFSGLLEKNL---QNEEKAKEYLGKICSSGNLLMTIINQILE 368 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ 370 ++RIE+G L A + + + + ++KN++ +D + + D +++ Sbjct: 369 IARIESGTTALQLKAEDINTLFHTVNTVFEEDVRKKNLQYSVDLDVYHTFILCDRVKLQE 428 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGR-----GQYISIKDNGPGIAEGEIPTVLTSFG 425 ++LN++SNA+K+T+ G VHV + + +D G G++E +P + F Sbjct: 429 IMLNIISNAIKYTSDGHGVHVKIYEKDSEDPRKARLIFTCEDTGIGMSEEYLPHIFEEFS 488 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIA 470 + ++ G GLGLPI +S++ GG + S G + Sbjct: 489 REHTTTENKVAGTGLGLPIVKSMIELMGGSIRVESTQGAGTKFTV 533 >gi|186681707|ref|YP_001864903.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464159|gb|ACC79960.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 162/356 (45%), Gaps = 16/356 (4%) Query: 146 LIALSISAL--SNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 I L+++++ + F L + V + + S+++ + Sbjct: 274 WIVLAVTSVDNALFGLEEIKLILIVLTVGLIGASLLASLYLAPYLARPVEELRDYALNIH 333 Query: 204 TYHLFKSNVKILSCQAEKD---DLIAELEVAKSLSDE---TRKRAEEENLAKSRFLASMS 257 ++H + + L +E K+ ++E K A+ N KS+FLA+ S Sbjct: 334 SHHAAQPVPHNFQIREFNQLAQALDQMVERLKAGAEELEIAWKEAKNANQIKSQFLATTS 393 Query: 258 HELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 HELR PL+ I+ V+E E E++ + + HLLN+IN++LD+S+IEAG Sbjct: 394 HELRNPLHTIINCIRVVEDGLCDSREEEM--EFLKRANETTIHLLNIINDLLDISKIEAG 451 Query: 318 RYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLS 377 + + + + L I+ E I + + Q+K +++ ++DP + AD ++QV++N++ Sbjct: 452 KLSVVITPLDLRQILLEVINLQSVNVQQKGLQLKCELDPQPIPIKADAAKLKQVLINVIG 511 Query: 378 NAVKFTAIGGRVHVTVGWTSGRG---QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 NA KFT G + + S G + + D G GI + + F + Sbjct: 512 NATKFTDT-GSITIATEIQSSNGKSQVVVIVTDTGIGIDPNQQHKLFRPFVMVNGTTTRQ 570 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILPNTRVLNFIPEDNHEST 489 +G GLGL I+++++ GG + S L +G + LP V + +P DN + Sbjct: 571 FEGTGLGLAISRNLIELMGGSITLESTGLHQGTTLKITLPLIDV-SLLPVDNKKEN 625 >gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 522 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + E + + + AEE + AKS FLASMSHELRTPL +LG +E+ + + Sbjct: 125 VTERVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTEL----ALMSEPS 180 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + Y+ + RSGQ L +L+N++LDLSRIEA + EL L + + L L A+ Sbjct: 181 AAVRTYLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLILDAR 240 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT---SGRG 400 + + + P++ V D +RQVI NL+SNA+KFT GG + V V + Sbjct: 241 ANGLCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGG-ITVAVESDTTGAPDL 299 Query: 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 + D G GIA ++ V +F Q G+GLGL I + ++ GG+ S Sbjct: 300 LRFRVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRLWAES 359 Query: 461 KLREGVEVIAI 471 + +G Sbjct: 360 EPGKGSCFQFT 370 >gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 566 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 7/285 (2%) Query: 193 LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 + L F + + K + ++ + ++ E RKRAE A F Sbjct: 149 ILGELIFSVALDQVDQEFTSKQMVLVSDLVHGVISRHLSLEREVELRKRAEASEKATKEF 208 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 +A ++HELRTPLN +LG +E++ +G + ++Y+G++ +SG L +IN++LD S Sbjct: 209 VAMINHELRTPLNGVLGSAELLSKTELG----DEQQQYLGNLIQSGDLLRVIINDLLDFS 264 Query: 313 RIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQV 371 ++ AG E+ + + D+ + +A EK I + + D + + Q+ Sbjct: 265 KMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRIHFSIDKKLGIPEFLVGDFERITQI 324 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 ++NL+ NA+KFT +GG V + V W + ++D G GI + F Q + Sbjct: 325 LVNLIGNAIKFTHLGG-VVLRVEWV-DGYAHFEVEDTGIGIPFEAQKALFDPFVQADRST 382 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 K + +G GLGL I ++++ G+ S+ R+G +LP + Sbjct: 383 KRSFEGSGLGLAICKNLVDLMDGEISFVSEPRKGTTFKVVLPLKQ 427 >gi|24374087|ref|NP_718130.1| sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24348570|gb|AAN55574.1|AE015696_4 sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1019 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 81/307 (26%), Positives = 148/307 (48%), Gaps = 18/307 (5%) Query: 200 FTYITYHLFKSNVKILSCQAE----KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS 255 F + + ++ I+S E + L +E ++ R +A + K+RFLA+ Sbjct: 506 FVNMQRRVAGAHHAIISTMNEVKLLNEALEERVEKRTKELEQERDKANQLAAVKARFLAN 565 Query: 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIE 315 MSHE+RTP+ I GF+E I P + I ++ HL N+IN+ILD ++I+ Sbjct: 566 MSHEIRTPITIIKGFTEQIL-----PNTQGEVHNALCKIEQNTLHLQNVINDILDAAKID 620 Query: 316 AGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILN 374 G+ ++E +++I ++ ++ A+ KN+ ID + + D ++Q++LN Sbjct: 621 EGKMTIAEQTVAIIPLLNSLSDSMKFLARTKNLTTELNIDIADIEHIITDPFRLKQILLN 680 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 +SNAVKFT G V + T+ I++ D G GI++ + T+ +F Q + Sbjct: 681 FISNAVKFTPK-GTVKLVANITNADELCIAVIDKGIGISDQQASTLFEAFTQADSSTSRD 739 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPE-------DNHE 487 G GLGL I++ + + ++S+L G LP ++++ + E H Sbjct: 740 FGGTGLGLFISKQLADAMFIKLHMQSELGVGSCFSVTLPESKIIKNLTEFSKNEKKIEHT 799 Query: 488 STQYKCY 494 + +K Y Sbjct: 800 TPDWKNY 806 >gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780] gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780] Length = 449 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F++++SHELRTPL ++ + E ++ G L+ ++I ++ ++ ++L L Sbjct: 212 FVSNVSHELRTPLTSVKSYLEALDE---GALSEPVAPDFIKVSLDETNRMMRMVTDLLHL 268 Query: 312 SRIEAGRYELSESAISLIDIVRECIIML---QLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 SRI+ L I+ + + + + +EK EI + + V D M Sbjct: 269 SRIDNATSNLDVELINFTAFITFILNRFDKIRAQDEEKKYEIVRDYPINSVWVEIDTDKM 328 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 QVI N+L+NA+K++ GG++ V++ T + +SI D G GI + ++P + F + Sbjct: 329 TQVIDNILNNAIKYSPDGGKITVSMKTTDDQMI-LSISDQGLGIPKEDLPKIFDRFYRVD 387 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP--NTRVLNFIPEDNH 486 A A+ G GLGL IA+ I+ H G +S+ +G +LP V I ED+ Sbjct: 388 KARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSEYGKGSTFTIVLPYDKEAVKEEIWEDDV 447 Query: 487 ES 488 E Sbjct: 448 ED 449 >gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 855 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 24/255 (9%) Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA+MSHE+RTP+N ILG ++V+ + + Y+ DI S LL LIN+ILD Sbjct: 452 EFLANMSHEIRTPMNGILGMAQVLGQTDL----DAAQASYLRDIEDSAASLLKLINDILD 507 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMR 369 S+IEA R EL++ SL ++ L + A+EK + + ++ P + D +R Sbjct: 508 FSKIEADRLELAQEPFSLRGLLSLIEASLGVLAREKGLGLSVEVAPETPDILIGDADRLR 567 Query: 370 QVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------------GQYISIKDNGPGIA 413 QV++NL+ NA+KFT GG + ++ S+ D G GI Sbjct: 568 QVLVNLVGNAIKFTTRGG-IVISARPAEPDPDVTLPGEAETTEATREILFSVSDTGIGIR 626 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + + +F Q + G GLGL I++ + GG + S+ +G Sbjct: 627 PEDAGRIFEAFTQADGSYTRRFGGTGLGLAISRRLARLMGGDISLDSEPGQGSTFTLS-- 684 Query: 474 NTRVLNFIPEDNHES 488 L+ P++ ++ Sbjct: 685 ARFGLDNTPDETADA 699 >gi|258540992|ref|YP_003175491.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] gi|257152668|emb|CAR91640.1| Two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] Length = 636 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 24/255 (9%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + + F++++SHELRTPL ++ + E + + + +++ ++ +I Sbjct: 377 DRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAW--KDPKLAPQFLNVTQEETDRMIRMI 434 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIML---------------------QLRAQ 344 N++L LSR+++G + + ++L + + Q Q Sbjct: 435 NDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQ 494 Query: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404 +K I ++I V D QVI N+++NA+K++ GG + + T +S Sbjct: 495 KKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVITARLFQTHDH-VILS 553 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 I D G GI ++ + F + A + G GLGL I++ ++ G+ + S+ Sbjct: 554 ISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGR 613 Query: 465 GVEVIAILPNTRVLN 479 G LP + + Sbjct: 614 GSTFYISLPYEPITD 628 >gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1150 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 107/420 (25%), Positives = 173/420 (41%), Gaps = 27/420 (6%) Query: 90 GKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIAL 149 G ++ +G+ R + V + G L + LL + Sbjct: 590 GSRIPLGRSLVGQAARSRRTIEVDDLPPGYATVFSGTGRTDPSHLVVLPVVLEDQLLGVV 649 Query: 150 SISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL------AGMLATALSFFTYI 203 ++A+ + + FL F V ++ ++++ D L L+ Sbjct: 650 ELAAVQPLTVVHRDFLDQFIESVGVNVSSLIANTRTDELLDRSQRLTAELSNRSRELQAR 709 Query: 204 TYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAE-------EENLAKSRFLASM 256 L +SN ++ A D ++E ++ R+ E ++ KS FLA+M Sbjct: 710 QEELQRSNAELKEKAALLADRNRDIERKNLEIEQARQELEARAQQLSRTSMYKSEFLANM 769 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 SHELRTPLN++L ++++ G L E +Y IH +G LL LIN+ILDLS++EA Sbjct: 770 SHELRTPLNSLLILAQLLAQNLEGNLT-EKQVDYAEVIHSAGSDLLQLINDILDLSKVEA 828 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNL 375 G+ + +A L ++ + A E+ + +P + DE +RQV+ NL Sbjct: 829 GKMPVHPAAFPLSGLMEHVEATFRPVATERELAFEAVTEPDAPQWLTTDESRLRQVLRNL 888 Query: 376 LSNAVKFTAIGGRVHVTVG-----------WTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 LSNA+KFT GRV + V SG + D G GI + ++ +F Sbjct: 889 LSNALKFTDQ-GRVELRVAVAGEEEVPSSLRDSGPVVAFRVVDTGIGIPADRLESMFGAF 947 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 QG G GLGL I++ + GG +S L G LP R + E Sbjct: 948 QQGDGTTSRHYGGTGLGLSISREVARLLGGTIEAQSTLGRGSCFTLYLPVHRRGSTQAEP 1007 >gi|150019629|ref|YP_001311883.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149906094|gb|ABR36927.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 490 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 9/271 (3%) Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 L + L E+ + E ++L +++ AE N AKS FLA+MSHE+RTPLN Sbjct: 112 RLGMVVKRELKDLHERVERKRVEEEMRNLLISSKEEAEAANKAKSNFLANMSHEIRTPLN 171 Query: 266 AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 ++G E+ M + +E + S L+N++N IL+ S+ EAG+ EL ES Sbjct: 172 GVIGMIEL---TLMNSELKDELRENLLIAKDSAYSLINIVNAILNFSKSEAGKMELRESN 228 Query: 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFTA 384 +L +++ + + ++K I + + + + D + ++Q++ NL+SNA+KFT Sbjct: 229 FNLKNLIHNTLKIYSYDVRKKGITLEYNDSDEIPDLLYGDSEKLQQILNNLISNAIKFT- 287 Query: 385 IGGRVH--VTVGWTSGRGQYIS--IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 GGR+ + G + +KD G GI E + + SF Q + + G GL Sbjct: 288 DGGRISLIIKAEQIIGEKIILRFLVKDTGIGINEEDKNLLFKSFSQLNNSYSREYNGTGL 347 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 GL +++ ++ GG + S + G Sbjct: 348 GLALSKQLVEILGGGICVESHMGLGSTFSFT 378 >gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC BAA-613] gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC BAA-613] Length = 738 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 26/286 (9%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 L++ E + A++ K FL+ MSHE+RTPL+ I+G +++ Sbjct: 204 NLKLLSIQEQ---ELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMTKIAATHLDD 260 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++ + I S +HL+ +IN++LD+S+IE G+ ++ L ++ + + Sbjct: 261 SN---RIEDCLSKITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIY 317 Query: 341 LRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-- 397 +A+E+ ++ I +V+ D + Q++LNLLSN++KFT GG VH+ V Sbjct: 318 AQAEEQGLKFECGIKNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVV 377 Query: 398 GRGQYISI--KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 ++ KD G G+++ + + F Q G GLG+ I +++ GG Sbjct: 378 DGKTHLQFITKDTGIGMSDEYLKRIFKPFEQADSGTSRKYGGTGLGMAITYNLVKLLGGS 437 Query: 456 FLIRSKLREGVEVIAILPNT---------------RVLNFIPEDNH 486 + SKL EG +LP +VL P++++ Sbjct: 438 IQVESKLGEGTTCTVVLPVDVPNEGKHKKWEWEPLKVLVADPDEDN 483 >gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 291 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 9/278 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261 + ++ + + L ELE + D+ ++ + + KSRFL+ MSHE R Sbjct: 11 DATAELERLRQQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFR 70 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL +IL + ++E GPLN E K+ + + S + L +++++LDL++IEAGR + Sbjct: 71 TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 129 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S L+D+ M + + P L ++ D+K + Q++ N +SNA+K Sbjct: 130 SPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDPPVLPMLYTDDKKLAQILRNFISNALK 189 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT G V V ++D G GIA + F Q ++ G GLG Sbjct: 190 FTPQ-GHVRVFAQLEGDTHVRFGVQDTGIGIAAELHEALFEDFVQVDSPLQKRLTGTGLG 248 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 L I + GG+ + S +G E +LP T V Sbjct: 249 LSICKRFAELLGGRVGVNSVPGQGSEFYVVLPVTLVAE 286 >gi|228920112|ref|ZP_04083461.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839568|gb|EEM84860.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 463 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A+ I + I+ + LS + HL + Sbjct: 154 LIYDMGLILAPLAIAMILITIWVGRKIIIA----ITKPLSQMERVANHLATGDFSERITV 209 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 210 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 265 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 266 AKG---PQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 322 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 323 YEIKFIEKEIHISTNLNPEVI-VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIYD 381 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + I+D G GI + + F + A G GLGL I + I+ HGGQ+ I Sbjct: 382 -YCELKIQDTGIGIDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWQI 440 Query: 459 RSKLREGVEVIAIL 472 S+ +G V L Sbjct: 441 ESEKDKGTTVSIKL 454 >gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1131 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 P + SA L + + + + +S + A I+ + Sbjct: 624 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 683 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K FLA++SHELRTPLNAILG+S +++ E P + + I RS + +I Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT +GG V V + + ++D G GIA +P V F Sbjct: 861 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 Q G+GLGL I++ ++ HGG S +G +LP Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969 >gi|229060824|ref|ZP_04198179.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603] gi|228718471|gb|EEL70103.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603] Length = 448 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 11/306 (3%) Query: 170 VVVALSTQAIMSMHVLDISLAGM-LATALSFFTYITYHLFKSNVKILSCQAEKDDLIAEL 228 + +A+ I+ + ++ I++A + + FT T + I + KD++ Sbjct: 153 IFLAVLLGFIVVLSIIFIAIAAGYIVRPIRTFTKATKKIASGEYDIELDENRKDEIGTLA 212 Query: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 + ++ + E + + F++++SHE ++PL++I GFS+ ++ E ++ E K Sbjct: 213 TNFQKMTKSIK----ELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSE---NMSEEERK 265 Query: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Y+ I + + +L ++L L+ ++ L L +++ I ML+ + +EK+I Sbjct: 266 RYLKIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFHLQKQIKDVIFMLEWKWREKDI 325 Query: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 + + ++ DE + QV N+ +N++KF+ GG V V ISI DN Sbjct: 326 AVEFDVPN--ITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEELES-SIVISISDN 382 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G G+ + E+ + F + A +G GLGL I Q I+ H G + S EG V Sbjct: 383 GIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTV 442 Query: 469 IAILPN 474 LP Sbjct: 443 RVELPK 448 >gi|229195596|ref|ZP_04322362.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293] gi|228587845|gb|EEK45897.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293] Length = 466 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 13/314 (4%) Query: 159 LPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQ 218 L Y + L P+ +A++ I + I+ + LS + HL + Sbjct: 157 LIYDMGLILAPLALAITLLTIWIGRKIIIA----ITKPLSQMERVANHLATGDFSERITI 212 Query: 219 AEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELET 278 + +D++ + +++ E E++ + FLA++SHELRTPL+ I G+SE I Sbjct: 213 SSEDEIGRLGKAFNKMAN----SLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV 268 Query: 279 MGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIM 338 ++ IH+ + L++++LDL+++E + L + I ++ + + Sbjct: 269 AKG---PQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDT 325 Query: 339 LQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +++ EK I I ++P + V DE M+QV+ N+L NA+++T G + +T+ Sbjct: 326 YEIKFIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIMITLRQI-D 383 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++IKD G GI + + F + A G GLGL I + I+ H GQ+ I Sbjct: 384 DYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIHEGQWRI 443 Query: 459 RSKLREGVEVIAIL 472 S+ G V L Sbjct: 444 ESEKGNGTTVSIKL 457 >gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 946 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L+++ R +AE + K FLA++SHELRTPL Sbjct: 518 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 577 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + + + I RS + +I+++LD+S I +G+ L Sbjct: 578 NAILGWSRLMQSDVA---ESANLGRGLVIIERSARAQKQIIDDLLDMSAIMSGKIRLQAE 634 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + +VR + ++Q A + I + + D ++QV+ NLLSNA+KFT Sbjct: 635 HFDIAGLVRSTLELMQPTALARGIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 694 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V + + ++D G GIA +P V F Q G+GLGL Sbjct: 695 PTGGTVRVAMDI-EDERLRLCVQDTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLS 753 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 I++ ++ HGG S +G +LP Sbjct: 754 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFR 786 >gi|219848945|ref|YP_002463378.1| AraC family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543204|gb|ACL24942.1| two component transcriptional regulator, AraC family [Chloroflexus aggregans DSM 9485] Length = 1201 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 160/401 (39%), Gaps = 15/401 (3%) Query: 79 TLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLT 138 A + V LL + ++ Sbjct: 431 VTTSAAMRWQYWQYFNRQQQTNNRVGRLTARLLHTLAES----DIYEILAHHLPELNIPL 486 Query: 139 IYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS 198 ++ + AV PVV S + + L Sbjct: 487 LWIG---FFEAENGDPVAWCRLRAVTAPQQPVVRIRSRTFPPRQWLPTRQSFQLALIPLG 543 Query: 199 FFTYITYHLFKSNVKILSCQAEKDDLIAELEVAK--SLSDETRKRAEEENLAKSRFLASM 256 + ++ + A L A+ + E ++ AEE N KSRFL+ + Sbjct: 544 GTGSEAGFVTFDASRLELYGTITQQINAALNTARLYRAASEGQRLAEEANQLKSRFLSMV 603 Query: 257 SHELRTPLNAILGFSEVIELETM--GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRI 314 SHEL+TPLN I+G S ++ E G + ++ + I+ S +HL LI+++LDL+ Sbjct: 604 SHELQTPLNLIVGMSGLLLREIAQSGDPLPSSIRDDLRRIYASARHLGRLISDVLDLASS 663 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 +AG+ L+ + L +++R + A +K + + I VW D ++Q+ LN Sbjct: 664 DAGQLRLNCEVVDLGEVMRVVADAGRQMAADKQLTWYDSIPAEGPWVWGDRTRLQQIGLN 723 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+ NA+KFTA GRV + V + ++++D G G+ E + F + ++ Sbjct: 724 LVVNAIKFTAR-GRVGLIVTPETD-AVTVTVRDTGIGLPPTEQAHIFEEFQRSERSVSQG 781 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSK--LREGVEVIAILP 473 G+GLGL I + ++A HGG+ +RS+ EG E LP Sbjct: 782 YGGIGLGLAICKRLVAMHGGEIGVRSRGIEGEGAEFFFRLP 822 >gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM 13855] gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM 13855] Length = 755 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 7/260 (2%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 E+ L+ AK ++ ++ AEE + KS LA+MSHE+RTPL I+GF+E I Sbjct: 479 RDITERKRKARRLKQAKEQAELSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIG 538 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E G + + I SG+ LL+ ++ +L+LS++EAG+ L I L R+ Sbjct: 539 DEIDG---DGGVAHFADLIEDSGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLAGQARQV 595 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 A + + + + + + + WADE G++ V+ NLLSNA+K+T G V V Sbjct: 596 AREFAAEADDSGLALEVEAEEAGA--WADEGGLQIVLQNLLSNAIKYTEE-GTVQVRTYR 652 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 + I+D G G+ ++ F QGS + +G G+GL + + GG Sbjct: 653 -EDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGS 711 Query: 456 FLIRSKLREGVEVIAILPNT 475 + ++ +G A LP Sbjct: 712 IDVETEKGQGSTFTARLPAA 731 >gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1021 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 134/351 (38%), Gaps = 11/351 (3%) Query: 130 GTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISL 189 P A ++ P V VA T + L Sbjct: 234 DASHPAVKPTLALAGGDKPWPVAETFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVL 293 Query: 190 AGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSD---ETRKRAEEE- 245 + + L + + Q + ++ A + +D E R+RAE Sbjct: 294 PIPASGDTGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRAEALA 353 Query: 246 --NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 + AK+ F +++SHE RTPL +L E + + +G HR+G LL Sbjct: 354 EIDRAKTAFFSNVSHEFRTPLTLMLSPLE---EALGRDGIADEQRTLLGIAHRNGLRLLK 410 Query: 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWA 363 L+N +LD +RIEAGR + + L E + + + P V+ Sbjct: 411 LVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAVLRFVIEAPPLPQPVYV 470 Query: 364 DEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR-GQYISIKDNGPGIAEGEIPTVLT 422 D +++LNLLSNA KFT G + V VG I + D G GI E EIP + Sbjct: 471 DRDMWEKIVLNLLSNAFKFTFE-GEIVVRVGPDPDGRHAVIEVSDTGTGIPEAEIPHLFE 529 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + A + +G G+GL + Q ++ H G + S++ G LP Sbjct: 530 RFRRVEGARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVTLP 580 >gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 920 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 16/310 (5%) Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDET 238 + ++ I+ A + L+F + + K N + QA L+A Sbjct: 393 YLRYWLIAIAFASLAMLGLAFALFRSNRARKRNAE--ELQAANQALLAIHTQ----LANE 446 Query: 239 RKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 ++ AE +N AKSRFLA++SHE+RTP+N +LG+S++++ ++ + + I+RSG Sbjct: 447 KQEAERKNEAKSRFLANVSHEIRTPMNVVLGYSDLLQQTPGLGSDS---RRALQVINRSG 503 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS- 357 +HLL LIN+ILD+SRIEAG +L E L ++ + +M R Q +N ++ K +P Sbjct: 504 EHLLTLINDILDVSRIEAGTIQLVEQDFCLQTLLMDLEVMFSERCQHQNTQLSIKAEPDT 563 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS----IKDNGPGIA 413 + D + Q+++NL+ NAVKFT G++ +TV +KD G GIA Sbjct: 564 HPDLRGDRGKLLQILINLVGNAVKFTEQ-GQILLTVNTQPMGADQFELNIIVKDTGCGIA 622 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + V + + Q + + +G GLGL I++ GG + S++ +G +P Sbjct: 623 PEDYDKVFSLYQQTE-SGQRLGKGTGLGLAISREFARRMGGDLVFESEIEKGTTFYLRIP 681 Query: 474 NTRVLNFIPE 483 E Sbjct: 682 FRAGQQVASE 691 >gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 291 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 9/278 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAK-------SLSDETRKRAEEENLAKSRFLASMSHELR 261 + ++ + + L ELE + D+ ++ + + KSRFL+ MSHE R Sbjct: 11 DATAELERLREQNQALREELEETNQGVLALYAELDQQAEQLRDVSELKSRFLSYMSHEFR 70 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPL +IL + ++E GPLN E K+ + + S + L +++++LDL++IEAGR + Sbjct: 71 TPLGSILSITRLLEDGMDGPLNAEQLKQ-VRFVSGSARELTEMVDDLLDLAKIEAGRITI 129 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVK 381 S L+D+ M + + P L ++ D+K + Q++ N +SNA+K Sbjct: 130 SPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDPPVLPMLYTDDKKLAQILRNFISNALK 189 Query: 382 FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLG 441 FT G V V ++D G GIA + F Q ++ G GLG Sbjct: 190 FTPQ-GHVRVFAQLEGDTHVRFGVQDTGIGIAAELHEALFEDFVQVDSPLQKRLTGTGLG 248 Query: 442 LPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 L I + GG+ + S +G E +LP T V Sbjct: 249 LSICKRFAELLGGRVGVNSVPGQGSEFYVVLPVTLVAE 286 >gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 490 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 5/285 (1%) Query: 189 LAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLA 248 LAG+ F I+ ++ A +D I+E + + E N A Sbjct: 209 LAGLRRDGTEFPIEISLGPLRTEDGAFVMSAIRD--ISERKRFERALQEKNVELAAANEA 266 Query: 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEI 308 K+RFLA+MSHELRTPLNAI+GF+ + + GPL + ++ + + SG+HLL LIN++ Sbjct: 267 KTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQERQ-LRTVQASGRHLLALINDL 325 Query: 309 LDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGM 368 LD+++IEAG+ ++ + + ++ E + L +A K + + + +D + + Sbjct: 326 LDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLSVPEPALQCESDRRML 385 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS 428 Q+++NL+ NA+KFT G +HV + +G I + D G GI + + +F + Sbjct: 386 NQIVINLIGNAIKFTDA-GSIHVGLRARAGGF-EIEVTDTGIGIGTDDQAKLFGAFSRVV 443 Query: 429 IAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 + +G GLGL ++Q + A GG +RS+ G +P Sbjct: 444 SSQGRVAEGTGLGLHLSQKLAALLGGTIDVRSEAGRGSCFSLRVP 488 >gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris] gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris] Length = 816 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 4/260 (1%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 + E E++ A +E K + K++F A++SHELRTPL ILG E++ Sbjct: 162 EMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLL 221 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 E P + I + Q LL +N++L++S+++AG+ L + I L+ ++++ Sbjct: 222 AEKRLPS---FVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQT 278 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 I + + + E+ + L D ++ V++N+LSNA+KFT +V + + Sbjct: 279 IALFEAQIPERKFVFSMDLPDEL-QAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQ 337 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 T+ + I+DNG GI T+ F Q G GLGL IA+ + HGG Sbjct: 338 TNPETCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGS 397 Query: 456 FLIRSKLREGVEVIAILPNT 475 L + G LP Sbjct: 398 ILAGNARNGGAIFTIELPLK 417 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 12/233 (5%) Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 +F+ SH+L+ PL A+ I E +G + +E K+Y+ + + + L Sbjct: 589 AEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMSKL 647 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 ++ +L + ++G I ++ + I L + +++ +L + Sbjct: 648 LDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPILNTC 700 Query: 365 EKGMRQVILNLLSNAVKFTA-IGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTS 423 E +R+V LL N+++ G + + R + D+GPGI + + Sbjct: 701 ELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIFQL 759 Query: 424 FGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 F K G+GL IA+ I+ GG+ + S+ +G + P + Sbjct: 760 FQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDK 810 >gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1150 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 P + SA L + + + + +S + A I+ + Sbjct: 643 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 702 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 703 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 762 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K FLA++SHELRTPLNAILG+S +++ E P + + I RS + +I Sbjct: 763 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 819 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 820 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 879 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT +GG V V + + ++D G GIA +P V F Sbjct: 880 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 938 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 Q G+GLGL I++ ++ HGG S +G +LP Sbjct: 939 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 988 >gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 942 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%) Query: 205 YHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPL 264 + +S + E+ + A+L+++ R +AE + K FLA++SHELRTPL Sbjct: 514 QAMARSASHLAGIVIERTRVDAKLKLSLQAETAARGQAEHASRVKDEFLATLSHELRTPL 573 Query: 265 NAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSES 324 NAILG+S +++ + + + I RS + +I+++LD+S I +G+ L Sbjct: 574 NAILGWSRLMQSDVA---ESANLGRGLVIIERSARAQKQIIDDLLDMSAIMSGKIRLQAE 630 Query: 325 AISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWADEKGMRQVILNLLSNAVKFT 383 + +VR + ++Q A + I + + D ++QV+ NLLSNA+KFT Sbjct: 631 HFDIAGLVRSTLELMQPTALARGIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFT 690 Query: 384 AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLP 443 GG V V + + ++D G GIA +P V F Q G+GLGL Sbjct: 691 PTGGTVRVAMDI-EDERLRLCVQDTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLS 749 Query: 444 IAQSIMANHGGQFLIRSK-LREGVEVIAILPNT 475 I++ ++ HGG S +G +LP Sbjct: 750 ISRQLVDLHGGSLGASSAGEGQGALFTIVLPFR 782 >gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1131 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 7/350 (2%) Query: 127 VEPGTWTPEYLTIYKSATLLIALSISALSN-FMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 P + SA L + + + + +S + A I+ + Sbjct: 624 FAPSPIGEDGPPCALSAHLGLQVICADIRADASFANHHAISAAMGIAACCITPILDSNGQ 683 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEE 245 + + + + +S + E+ + A+L+++ R +AE Sbjct: 684 VLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHA 743 Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + K FLA++SHELRTPLNAILG+S +++ E P + + I RS + +I Sbjct: 744 SRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTH---LGRGLVIIERSARAQTQII 800 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID-PSLSSVWAD 364 +++LD+S I +G+ L + +VR + ++Q A + I + + D Sbjct: 801 DDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGD 860 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 ++QV+ NLLSNA+KFT +GG V V + + ++D G GIA +P V F Sbjct: 861 AGRLQQVLTNLLSNALKFTPVGGTVRVAMDI-EDERLRLCVQDTGIGIAADFLPHVFDRF 919 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSK-LREGVEVIAILP 473 Q G+GLGL I++ ++ HGG S +G +LP Sbjct: 920 RQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969 >gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii Ech703] gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703] Length = 934 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 6/249 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E AE+ + +KS FLA++SHELRTPL I+G +++ +++ N Sbjct: 431 RMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLSRDAN----R 486 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S LL +I++ILD S+IE+ + ++ + +++ I +K + Sbjct: 487 LVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKRLT 546 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+PS+ + D ++QV+ NLLSNA+KFT G + + V ++D Sbjct: 547 LYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDT-GCIVLQVQRRHDGYLAFQVRDT 605 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI + + F Q ++ QG GLGL I + +++ G I S+ G Sbjct: 606 GVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESEPGLGSLF 665 Query: 469 IAILPNTRV 477 +P + Sbjct: 666 GVRIPLYQA 674 >gi|303245671|ref|ZP_07331954.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492934|gb|EFL52799.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 818 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 16/316 (5%) Query: 168 FPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAE 227 P ++L I ++LA ++ S T L ++N + + I E Sbjct: 210 APASLSL-LSDITPQRQAQLALAELIRDQESRIASRTASLREANRTLETANERLTREIEE 268 Query: 228 LEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETY 287 E RK+A + + AKS FLA+MSHE+RTPLN ILG +++ + Sbjct: 269 HERTARKLTAARKKASQASKAKSIFLANMSHEIRTPLNVILGMADLALR--PDSQGQVDH 326 Query: 288 KEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKN 347 + I +G L L+ ++LDLSRIEAGR +L S ++ + + A + Sbjct: 327 VRALEMIREAGASLRALLGDLLDLSRIEAGRLDLESIPFSPSRVLDAALSGHAVLAARQG 386 Query: 348 IEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG------ 400 + + + + + D + QV+ NL+ NA+KFT GR+ V V G Sbjct: 387 LALEGHVASDVPETLVGDPGRLGQVLANLIGNALKFTPA-GRIDVFVRRGDGDKEGGCPE 445 Query: 401 -----QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 S++D G GI + + SF Q +I G GLGL I + ++ GG+ Sbjct: 446 PEVVTLLFSVRDTGVGIDPEKRKAIFQSFRQADESITRQYGGTGLGLAICRRLVGLLGGR 505 Query: 456 FLIRSKLREGVEVIAI 471 + S+ EG E Sbjct: 506 IRVASRPGEGSEFSFT 521 >gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length = 1227 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 130/338 (38%), Gaps = 16/338 (4%) Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL--FKSNVKILSCQAEKDDL 224 + + L + L A + ++ L + A + Sbjct: 265 IATADLPGDVPPDAAGQALLLPLTATNEPAGALLLGVSRRLPFTDDYRDFVDLVAAQVSR 324 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG-FSEVIELETMGPLN 283 + A + AK+ F A++SHE RTPL +LG E++ + Sbjct: 325 AVGKQRAYEQERARAAELAALDRAKTNFFANVSHEFRTPLTLVLGPMEEMLADREL---- 380 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 E Y + + +HR+G LL L+N +LD SR+E+GR L D + Sbjct: 381 PERYLDRLTVMHRNGLRLLKLVNTVLDFSRLESGRLAARYQPTDLSDYTSRLASTFRSAT 440 Query: 344 QEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + + + P + V+ D +++LNLLSNAVKFT G + V V + Sbjct: 441 ERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLLSNAVKFTFD-GEIRVRV-RADDGAAVL 498 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GIA E+P V F + + A +G G+GL + + ++ HGG S + Sbjct: 499 EVTDTGVGIAPEELPQVFERFHRVAGARSRTHEGTGIGLALVRELVEMHGGTVTAHSVVD 558 Query: 464 EGVEVIAI-------LPNTRVLNFIPEDNHESTQYKCY 494 G LP RV P E Q + Y Sbjct: 559 RGTTFTVTMPFGYAHLPADRVAALSPVPLTEPEQARLY 596 >gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1000 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 14/267 (5%) Query: 233 SLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 ++K AE N AK+ FLA+MSHE+RTPLN I+G +++ + ++ K+Y+ Sbjct: 595 RALQRSKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVS 650 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + S L L++++LDLSRIEAG L + ++ +++ + L + +E+ Sbjct: 651 NAISSSGRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELAL 710 Query: 353 KIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS-----GRGQYISIK 406 +I P L + D +RQ++ NL+ NA+KFT G +HV + + + IS++ Sbjct: 711 EISPGLPQHILLDGGRLRQILFNLVGNALKFTEK-GHIHVRLDELAIHGGMRQLLLISVE 769 Query: 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 D G GI +G + + F Q + + GVGLGL I + ++ GG I S EG Sbjct: 770 DTGIGIPQGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGT 829 Query: 467 EVIAILPNTRVLNFI---PEDNHESTQ 490 + LP PE + E+ + Sbjct: 830 RIHLSLPFRTCAPDSGDKPETSGETPE 856 >gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1] gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1] Length = 949 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G +++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + + S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPS-LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ IDP + D ++QVI NLLSNA+KFT + G + + + IS++D Sbjct: 567 LYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDM-GCIILHL-RQDSDYLSISVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + ++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TIRIPL 690 >gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] Length = 949 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli E24377A] gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E24377A] Length = 949 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + ++ S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + +D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|110834714|ref|YP_693573.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] gi|110647825|emb|CAL17301.1| sensor histidine kinase/response regulator, putative [Alcanivorax borkumensis SK2] Length = 646 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 150/347 (43%), Gaps = 25/347 (7%) Query: 147 IALSISALSNFMLPY----AVFLSFFPVVVALSTQAIMSMHVLDISLAGM-----LATAL 197 I + +S+ L + S P A+ ++ ++ A + L L Sbjct: 146 IGEVVLGMSSARLLARQKEILKASLIPAFFAIILGLWIAHYLTRQIAAPLGDLSGLLRTL 205 Query: 198 SFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKS-------LSDETRKRAEEENLAKS 250 + Y + ++ Q ++L LE A+ + + A+ + AKS Sbjct: 206 RYGEYTVRGRRRLQGELGELQDNINELAGALEGARRKQQAAMTELQDAHRHAQTASQAKS 265 Query: 251 RFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 FLA MSHELRTP+N +LG +++E N+ EY S HLL++IN+ILD Sbjct: 266 DFLAMMSHELRTPMNGVLGMLQLLEETA----QNDEQHEYTQAALESTGHLLDVINDILD 321 Query: 311 LSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS--SVWADEKGM 368 SRIEAGR +L S ++ +++ C+ + A+ K + + + +L+ +D + Sbjct: 322 FSRIEAGRMDLDPSFFEILPLLKNCVATFRYVAESKGLYLQLEGAEALAGQVARSDPTRL 381 Query: 369 RQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY---ISIKDNGPGIAEGEIPTVLTSFG 425 RQV+ NL+SNAVKFT GG I++ D G GI + + +F Sbjct: 382 RQVLSNLISNAVKFTQEGGVTVSVSVSPVHGDWLDLSIAVADTGIGIPREKRAGLFKAFS 441 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 Q + G GLGL IA+ + GG + + G L Sbjct: 442 QIDSSTSRRFGGTGLGLAIARKLSEMLGGTLTVDGREEGGSIFTLSL 488 >gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 487 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 79/292 (27%), Positives = 147/292 (50%), Gaps = 9/292 (3%) Query: 203 ITYHLFKSNVKILSCQAEKDDL-IAELEVAKSLSDETRK---RAEEENLAKSRFLASMSH 258 I + ++ +AE L +ELE+ + E+ K A E N ++ F +++SH Sbjct: 174 IADVIRNHKYTLIKNEAEWSVLKNSELELKEIKLKESNKMLGEALEYNKLRTEFFSNISH 233 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNE----TYKEYIGDIHRSGQHLLNLINEILDLSRI 314 EL+TPL IL +++ + LN + T K+YI I ++ LL L+N I+DL++I Sbjct: 234 ELKTPLTIILSALQLLNEKNSTHLNEKINENTEKKYIDIIKQNSYRLLRLVNNIIDLTKI 293 Query: 315 EAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILN 374 ++ +++ ++++++V ++ + + I+I D + D ++ILN Sbjct: 294 DSDFFDIQLKNLNVVEVVENTVLSVAEYIKSNGIKITFDTDVEEKIMAIDIDQFERIILN 353 Query: 375 LLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 L+SNA+KF G + V++ + IS+KD+G GI + ++P + F Q ++ Sbjct: 354 LISNAIKFAKPEGNIWVSL-YDKQDHLIISVKDDGKGIPKDKLPIIFERFYQIDKSLSRE 412 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +G G+GL I +S++ HGG+ + S L G E P + IP + Sbjct: 413 CEGSGVGLAIVKSLVEKHGGKITVNSTLGVGSEFTMKFPIRTIPEKIPTSSS 464 >gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 873 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 52/381 (13%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYI 203 L++ ++ A L P +A L I Sbjct: 363 GLVMVDGAGIVAVTNRRAADLLGLDPAFLASRPSCEAMREALQARGEFAALDPA-----I 417 Query: 204 TYHLFKSNVKILSCQAEKDDLIAEL-EVAKSLSDE-----------TRKRAEEENLA--- 248 L ++ + + E+ ++ EVA + + + RK E Sbjct: 418 RDGLRDRDLDRIGARYERVRPNGQVLEVANTATADGGILRIYTDVTARKAVETALAEAHR 477 Query: 249 ---------------KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 K+ FLA+MSHE+RTPL A+LG+++++ + +G Sbjct: 478 LAQQARRAAEAASAAKTDFLATMSHEIRTPLTAVLGYADLLMARS---DLEAEQARLVGR 534 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 I +G+ L +++++LD SRIEAGR +L+ SL D++ E + +++ A K + I Sbjct: 535 IVTAGEALRTIVDDVLDFSRIEAGRVDLAPRPFSLADLIEEALALVRPEADRKGLPIAVA 594 Query: 354 IDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----SGRGQYISIKD 407 I+P L + D +RQ++LNLL+NAVKFT G + + V GRG IS++D Sbjct: 595 IEPGLPPRLVGDVDRLRQILLNLLNNAVKFTPA-GSIGLAVARDPTGPAEGRGLLISVRD 653 Query: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 G GI + + F Q +I+ G GLGL I++ ++ G+ + S+ EG Sbjct: 654 TGIGIPADKHARLFERFSQVDGSIQRQYGGTGLGLAISRRLVEAMHGRIGVESREGEGST 713 Query: 468 VIAILPNTRVLNFIPEDNHES 488 L +P E+ Sbjct: 714 FWFRL-------ALPAAEPEA 727 >gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 1140 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 8/356 (2%) Query: 123 LLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFP-VVVALSTQAIMS 181 L V A + A+ N ++P LS P + + Sbjct: 222 LAAAVGLDPERLGLPLRMLGAAGDAPWPVQAVFNDLVPRVADLSALPDLPTGPWDRPPTQ 281 Query: 182 MHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKR 241 VL ++ AG A F + + + A L+ A + +E R+R Sbjct: 282 ALVLPLAQAGQTRAAGVFVAALNPYRPLDEDYRGFLGLFVGQVTAALKGANAY-EEERRR 340 Query: 242 AE---EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSG 298 AE E + AK+ F A+ SHELRTPL +LG E + GPL +E + HR Sbjct: 341 AEALAELDRAKTAFFANASHELRTPLTLMLGPLEDLLTGDAGPLT-ARQQEVLEMAHRGS 399 Query: 299 QHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSL 358 LL L+N +LD SR+EAGR + S L + + + + + ++ P Sbjct: 400 LRLLRLVNTLLDFSRLEAGRAQASYVPTDLATVTADLASSFRSAMERAGLRYGVEVSPLS 459 Query: 359 SSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIP 418 V+ D + +V+LNLLSNA KFT G V VT+ GR + ++D+G GI E+ Sbjct: 460 EPVYVDPEMWEKVVLNLLSNAFKFTLS-GEVAVTLAQ-EGREAVLRVRDSGVGIPAAELG 517 Query: 419 TVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + + +G G+GL + + I+A HGG+ ++S +G LP Sbjct: 518 RLFERFHRVEGQRGRSFEGTGIGLALVREIVALHGGRVEVQSAEGQGTTFTVRLPL 573 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 9/265 (3%) Query: 209 KSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 + + + E + A++ + + N RF SH+L+ P+ + Sbjct: 879 RDEAGRVRHMVGFVRDVTERKRAETALRQANEELSRSNAELERFAYIASHDLQEPIRTVG 938 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 F+ ++ G + +E ++Y+ + + L++++L SR+ A + L Sbjct: 939 SFAGLLARR-YGDVLDERGRQYLHTVELGALRMKTLVDDLLVFSRLNAAHPPFQL--LDL 995 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 V E + L + QE + L +V+ D + Q+ NL++NAVKF G Sbjct: 996 NVPVHEALARLDMTLQETGARVTV---GDLPTVYGDPSRLAQLFQNLIANAVKFRREGVP 1052 Query: 389 VHVTVGW-TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 VT+G +G ++++ DNG GI + + F + + +G GLGL I Q Sbjct: 1053 PEVTIGAARAGNLWHLTVSDNGIGIEQAYFTRIFEMFQRLHS--RDRYEGSGLGLAICQK 1110 Query: 448 IMANHGGQFLIRSKLREGVEVIAIL 472 I+A HGGQ + S G L Sbjct: 1111 IVAQHGGQMWVESTPGAGSTFHFTL 1135 >gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] Length = 1937 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 19/386 (4%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQ--AI 179 ++ L ++ + + T I + ++ ++ M + + L ++ + Sbjct: 1112 AVIELASFNRFSETHQSFLDQLTESIGIVLNTIAANMRTEGLLKQSQLLTGELQSRQEEL 1171 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + A L + L ++N ++ + E+E + Sbjct: 1172 KKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKARLLEIQKREVEGKNREVSIAK 1231 Query: 240 KRAEE-------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 EE + KS+FLA+MSHELRTPLN++L S+++ G L + +E+ Sbjct: 1232 TALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTD-KQREFAK 1290 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 I+ +G LL+LIN+ILDLS+IE+G L ++L DI + A+E+++ Sbjct: 1291 TINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFVI 1350 Query: 353 KIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG-------RGQYIS 404 ++DP L + D K ++QV+ NLLSNA KFT G V + +G G + +S Sbjct: 1351 EVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEK-GSVSLKIGSAEGSPLRAGTQWIAMS 1409 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D G GIAE + + +F Q G GLGL I++ I GG+ ++ S++ Sbjct: 1410 VTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVESRVGT 1469 Query: 465 GVEVIAILPNTRVLNFIPEDNHESTQ 490 G LP + E++ Sbjct: 1470 GSTFTLFLPFEPPAQALTGRAAEASD 1495 >gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 836 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 163/296 (55%), Gaps = 2/296 (0%) Query: 185 LDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE 244 +I + F + + I + + + D+ R+ AE Sbjct: 533 REILGLTRQGGQIPIFMTLGKIGSSAASGIDQRYCALLRDMTHWKKVERELDDARREAER 592 Query: 245 ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL 304 + KS FLA +SHE+RTPLNAI+GF+EVI E GP+ N YK+Y+ DIH SG +++L Sbjct: 593 ASALKSDFLAKVSHEIRTPLNAIIGFAEVIMEERFGPIGNARYKDYLKDIHSSGSLVMSL 652 Query: 305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD 364 +N++LDLS+IEAG+ +LS A+ IV EC+ ++Q +A + I + P L ++AD Sbjct: 653 VNDLLDLSKIEAGKMDLSFEAVDANRIVTECVSIMQPQASSARVVIRLSLAPQLPHIFAD 712 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSF 424 E+ +RQ++LNLLSNA+KFT GG+V V+ + I+D G G++EG++ L F Sbjct: 713 ERSVRQIVLNLLSNAIKFTQGGGQVIVSTALNDENCAALRIRDTGVGMSEGDLKVALEPF 772 Query: 425 GQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNF 480 GQ G GLGLP+ ++++ + F I+SK+++G V RV+ Sbjct: 773 GQA--PRARGSGGTGLGLPLTKALVEANRASFSIKSKVQDGTLVEVAFLPARVVAA 826 >gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] Length = 565 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 8/296 (2%) Query: 192 MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSR 251 ++ AL + ++ L + ++A + + E+RKRAEE A Sbjct: 148 VIVGALIVQVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRD 207 Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A ++HELRTPLN +LG +E+I + + +E + ++ +SG+ L +IN++LD Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSS----SQREIVNNLSQSGEFLRTIINDLLDY 263 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQ 370 S+I AG EL +L D+ + RA EK I+ + + + D + + Q Sbjct: 264 SKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQ 323 Query: 371 VILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIA 430 + +NL+ NA+KFT G V V + W + + S++D+G GIA+ I T+ F Q + Sbjct: 324 LFVNLIGNAIKFTDQ-GHVSVEIKWLNDQFI-FSVEDSGVGIAQSAIKTLFEPFTQADNS 381 Query: 431 IKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNH 486 +G GLGL I + + A G + S + G LP +V++ + E + Sbjct: 382 SSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPL-QVVDTLAERDS 436 >gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] Length = 444 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 5/231 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 NL K F ++SHEL+TP++AI G +E++ + E++ I + L+ Sbjct: 218 NLQK-EFFGNVSHELKTPISAIKGCTEILLNGA--KNDPAVLDEFLTMISDENNRMEQLV 274 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 ++L ++R E + ++ L +++ +CI+ A+ K+ +I + P + D Sbjct: 275 KDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDY 333 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++ LNLL+NA+ ++ + V G I + D G GI ++P + F Sbjct: 334 IQLKHCFLNLLTNAIHYSGENTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFY 392 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 + A G GLGL I QSI+ H G+ ++ S+L G LP + Sbjct: 393 RVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPKKK 443 >gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] Length = 635 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 4/233 (1%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + + F+A++SHELRTPL + + + + + + ++ + ++ Sbjct: 399 EKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAW--QDKDLAPTFLNVTQTETERMI 456 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW 362 L+N++L LS++++ Y S I+ + I ++ ++ I + + V Sbjct: 457 RLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVA 515 Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 D+ + QV+ N++SNA+K++ GG + ++ + +SIKD G GI + + + Sbjct: 516 IDQDKITQVLDNIISNAIKYSPEGGIITFSIAQHT-HEIVVSIKDQGMGIPKSNLAKIFE 574 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 F + A G GLGL IA+ I+ H G+ S+ +G + LP Sbjct: 575 RFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLPIE 627 >gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 9/306 (2%) Query: 170 VVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELE 229 + AL ++ L + + T +++ + + ++S E ++ Sbjct: 608 MRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGFIVVVSDITEIKVAEQQMA 667 Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + AE AKS FLA+MSHE+RTP+NAI+G + ++ +T L +E Sbjct: 668 ALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSL----QRE 723 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 +G I + +HLL +IN++LDLS+I+AG+ L ++ +L +++ ++ A EK +E Sbjct: 724 RLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANEKGLE 783 Query: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----QYISI 405 + D S + D + Q ++NLL+NAVKFT G V + + + Sbjct: 784 LVLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHA-GWVRLRGELLAEDRQRVQVRFEV 842 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI ++ +F Q + G GLGL + Q ++ GG+ +RS+ G Sbjct: 843 QDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGVRSEPGVG 902 Query: 466 VEVIAI 471 Sbjct: 903 STFWFT 908 >gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342] gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342] Length = 588 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1713 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 17/382 (4%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 L+V + ++ L +T E + + + + + + I+ L + + L Sbjct: 877 LNVLVVPVLFEEALIGVIELASFEGFTDEQVEVIELISSNLGIVINNLRSQERTQTLLLE 936 Query: 167 FFPVVVALSTQ--AIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDL 224 L Q + S + + +L T+ + L SN ++ Q Sbjct: 937 TQRQSEELQAQQEELKSSNESLLEQTQLLKTSEEELKQQSEELKVSNEELEEKQVFLKRQ 996 Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 +E+E AK+ + + KS FLA+MSHELRTPLN++L ++ + + Sbjct: 997 KSEIEAAKTDLTIKAEELALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNK-SQHLD 1055 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 ET E I G +LL LIN+I+DLS++EAG+ + +S+ + R + A+ Sbjct: 1056 ETEVEDAKIIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVSIAVLCRNLRQVFDPIAK 1115 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY- 402 ++ + + ++D L +V +D + Q++ NLLSNA+KFT G V + +G+ + + Sbjct: 1116 DRELVLNIEVDDKLPSTVRSDGHRVEQILRNLLSNALKFTET-GSVTLKIGYVAPNTLFS 1174 Query: 403 -----------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 S+ D G GI E +I + +F Q + G GLGL IA+ + Sbjct: 1175 HSSLDAETALSFSVVDTGIGIPENKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRL 1234 Query: 452 HGGQFLIRSKLREGVEVIAILP 473 GG+ ++S L EG LP Sbjct: 1235 LGGEIQLQSVLDEGSTFTLYLP 1256 >gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli O157:H7 str. EDL933] gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO] gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408] gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO] gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162] gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082] gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO] gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408] gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162] gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082] Length = 611 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 E+ + F++++SHELRTPL ++ + E + + E ++ ++ Sbjct: 372 EKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLDETDRMI 429 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA--QEKNIEIFQKIDPSLSS 360 +IN++L+LSR++ G +L ++ ++V + + QEKN +I ++ Sbjct: 430 RMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLW 489 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 V D + QV+ N+++NA+K++ GG + + T +SI D G GI + ++ V Sbjct: 490 VEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN-VVLSITDQGLGIPKKDLNRV 548 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A A+ G GLGL I++ ++ H G SK +G L Sbjct: 549 FERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EDL933] gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. Sakai] gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EC4024] gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. EC1212] gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. G5101] gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. USDA 5905] gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. LSU-61] gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1125] gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1044] Length = 949 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 586 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 154/339 (45%), Gaps = 20/339 (5%) Query: 160 PYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALS--FFTYITYHLFKSNVKILSC 217 + + ++ L T I++ +L G+++ FF I L KS +++ Sbjct: 1 MASCAIVAQSLLTYLFTGGILAQDILRSISFGLISAPFVIYFFNLIVEKLEKSRIQLEQS 60 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 + L + + E+ N KS +A++SHELRTPLN I+G S ++ Sbjct: 61 VYDLGILREQDAFLNATL-------EKNNRDKSVLMATISHELRTPLNGIIGLSRILLEG 113 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 + + +EY+ I+ S L ++ ++I+DL +I++ R EL I ++ + Sbjct: 114 EL----TDQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISN 169 Query: 338 MLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT 396 L A++ I+ L + ++ D + Q++ NL+SNAVKFT GG ++++V Sbjct: 170 FGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRI 229 Query: 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQF 456 S++D G GI + E V F Q + + QG G+GL I++ I GG Sbjct: 230 DNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDL 289 Query: 457 LIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQYKCYA 495 +RS++ +G + P + +S + +A Sbjct: 290 TLRSEMGKGSTFTLTI------QADPVEAKKSVKINAHA 322 >gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] Length = 1111 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 13/335 (3%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 +IA ++ + +FML + F + +V + LD + L + Sbjct: 556 VIAALLTPVGSFMLVFLSFAATISLVFLGIRAQTPASAHLDTAFWKAFFVLLVIGGITAW 615 Query: 206 HLFKSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSH 258 L + L Q E I + + + ++ AE N+AKSR++ +SH Sbjct: 616 ALVLARQSRLVAQEEPRRQTSLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISH 675 Query: 259 ELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR 318 ELR+PLNAILG+++++E +T P E ++ + I RSG+HL LI +LD+S+IEAGR Sbjct: 676 ELRSPLNAILGYAQLLERDTAIP---ERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGR 732 Query: 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLS 377 EL I + + + + ML+L+A+ K+I + V DE+ +RQ+++NLLS Sbjct: 733 IELYRDEIRFPEFLDQIVQMLRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLS 792 Query: 378 NAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG 437 NA+KFT GG V + + + S I + D G GIAE ++ + F +G+ + + G Sbjct: 793 NAIKFTRAGG-VTLRLRFRSE-VAEIEVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPG 850 Query: 438 VGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 VGLGL I ++++ GG + S+L EG L Sbjct: 851 VGLGLTITKTLVEVMGGDIAVWSRLGEGSRFRVRL 885 >gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 490 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ K + Sbjct: 491 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 550 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 608 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 609 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 668 Query: 469 IAILPN 474 +P Sbjct: 669 TVRIPL 674 >gi|295688144|ref|YP_003591837.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430047|gb|ADG09219.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 587 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 184/471 (39%), Gaps = 33/471 (7%) Query: 34 DREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKV 93 D + + ++ +R++P + + A I I W + LA + ++ Sbjct: 10 DTRLDEVAADT-YRLTPSRLVSAAVAAVIVGLGLGATIAAGWLVSLLAGEGLAYLVTRRF 68 Query: 94 MNSDIKIGEVYVWRIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISA 153 + + + + I W L + + + + Sbjct: 69 RSGRTGTARLRA---LFIWASVPINASWAALAALLWLQGHGDTRLGAVAIWCGQLIYTQN 125 Query: 154 LSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK 213 + P V P+V + +L L T I L Sbjct: 126 FRHQSAPLLVLNGLAPMVSLIVFPFFFLPGDELETLTARWGLFLLVATTINVMLLNRAAA 185 Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 +D + R++A E AKS F+A SHELRTP+N +LG + Sbjct: 186 RRMDDLTRD------------LRQEREKALEAARAKSTFIAVASHELRTPMNGLLGMAHA 233 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + + + +E + + RSG L++L+N++LDLSRIE GR EL+ + I+L ++ Sbjct: 234 LGRSDL----SAAQREQVDLMIRSGDSLMHLLNDVLDLSRIETGRVELAPADIALPRVMT 289 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGR-VHV 391 E + + A K + + P L + + AD+ +RQV+ NL+SNA+KFTA GG + V Sbjct: 290 EVVNAWRDAAAFKGLSLSIDFAPDLPAAIHADDLRIRQVMTNLVSNAIKFTAEGGVAIEV 349 Query: 392 TVGWTSGRGQYI--SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 + I ++ D+GPG+ + V SF Q + G GLGL IA+++ Sbjct: 350 GATTAPDGRRMIAITVADSGPGVPDHARERVFDSFTQADETVSRDYGGAGLGLSIARALA 409 Query: 450 ANHGGQFLIR-SKLREGVEVIAIL------PNTRVLNFIPEDNHESTQYKC 493 GG ++ S++ G + P + P + Q + Sbjct: 410 RRMGGDLVLAPSRM--GARFLFTFEAVETVPVRERADDTPPEAPALDQLRV 458 >gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes] Length = 616 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 140/265 (52%), Gaps = 6/265 (2%) Query: 210 SNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG 269 S + ++ + + + L +++ L +E+R E N + FL+++SHEL+TPLN I Sbjct: 328 SILHDITSKIQVEKLEQDVKKNIELLNESR----EYNKLITEFLSNISHELKTPLNVIFT 383 Query: 270 FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 +++ ++ E +Y+ I ++ L+ LIN +LD +++++G +L+ +++ Sbjct: 384 AVQLL-GFYEKDVDYEKEDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIV 442 Query: 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRV 389 ++ E + + A+ K I I + + D + ++ILNLLSN++KFT GG + Sbjct: 443 SLIEEITLSVTSYAESKEINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNPGGNI 502 Query: 390 HVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 V V S YI +KD G GI ++ ++ F Q +K ++G G+GL + +S + Sbjct: 503 FVNVK-DSEEYVYIHVKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFV 561 Query: 450 ANHGGQFLIRSKLREGVEVIAILPN 474 H G+ I S+L +G E I LP Sbjct: 562 EMHKGEVTINSELGKGTEFIIKLPA 586 >gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1482 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 157/378 (41%), Gaps = 19/378 (5%) Query: 115 IAIGLCWTLLTLVEPGTWTPEYLTIYKSATL----LIALSISALSNFMLPYAVFLSFFPV 170 G + + T I L + +++++ F + FL Sbjct: 812 ALTGAPAGYVPIRSGLGQTDATNVIVLPVLFERQTLGVIELASVNVFTQTHRDFLETLKE 871 Query: 171 VVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEV 230 + + I + D L + L +SN ++ A+ ++E+ Sbjct: 872 TIGTAVNTITTNVRTDALLRESQRLTTELQKRQSD-LQESNNELEDKAAQLARQNKDIEI 930 Query: 231 AKSLSDETR----KRAEE---ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 + ++ R RA++ + KS F+A+MSHELRTPLN++L + ++ L Sbjct: 931 KNTEIEQARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLADNVDTNLT 990 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 ++ IH +G LL LIN+ILDLS+IEAGR E+ + + D+ Q A Sbjct: 991 -PRQVDFAQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAATFQPLA 1049 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSG 398 EK + + + +V AD + ++Q++ NLLSNAVKFT G V + V G Sbjct: 1050 AEKGLRLRVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDT-GEVTLRVTAARGAHGE 1108 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 ++ D G GIAE ++ + +F Q G GLGL I++ + + + Sbjct: 1109 PAIAFAVVDTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLSAELRV 1168 Query: 459 RSKLREGVEVIAILPNTR 476 S G LP Sbjct: 1169 SSAPGRGSTFTLQLPIEP 1186 >gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 588 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQNPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus] Length = 682 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS+FL++MSHE+RTPLN I G + + N E++ I S LLNLIN+ Sbjct: 84 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLEHVNIIKASTDSLLNLIND 139 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEK 366 ILDLS++EAG +LS + L ++ E + A +K +E+ +D + V D+ Sbjct: 140 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKF 199 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR----------GQYISIKDNGPGIAEGE 416 +RQV+LN++ NA+KFT G + + + D G G + E Sbjct: 200 RIRQVLLNVVGNAIKFT-EHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAE 258 Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + F Q + G GLGL I+ + HGG+ RS +G + Sbjct: 259 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 314 >gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1057 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 24/370 (6%) Query: 126 LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVL 185 L+ P T + I + + L+ + +L + AL ++++ Sbjct: 222 LLAPVTADGRVIGIIELGRVTDPLTAGSREEELLARCGENIGLALRTALLRAQLVTLLEE 281 Query: 186 DISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEE- 244 + L T L + + Q++ + AELE +E + E Sbjct: 282 TQRQSEELQTQQEELRVANEELEEQRRSLQQSQSDLEVQQAELEQTNVQLEERTQALEAQ 341 Query: 245 --------------------ENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 + KS FLA+MSHELRTPLN+ L ++++ G L+ Sbjct: 342 RQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLST 401 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 E K Y I S LL LIN+ILDLS+IEAG EL++ ++ +++ + A+ Sbjct: 402 EQVK-YAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLAR 460 Query: 345 EKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 +K + + + + D + ++Q++ NLL+NA+KFT G+V ++V + Sbjct: 461 QKGLALEIAAVADAPTQLVVDNQRLQQILKNLLANAIKFT-EHGKVSLSVQAHAPGRVRF 519 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 ++ D G GIA + + +F Q + + G GLGL I++ + GG + S+ Sbjct: 520 AVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPG 579 Query: 464 EGVEVIAILP 473 G LP Sbjct: 580 RGSCFTLELP 589 >gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] Length = 592 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 +R E + F+A++SHEL+TPL++I ++E + M + E K ++ I Sbjct: 362 RRLESL---RQEFVANVSHELKTPLSSIKAYTETLIRGAMD--DPEINKTFLLRIEEQAD 416 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L LI +++ L+ IE+G I L V C++ Q A+ K IE+ + Sbjct: 417 RLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKVAESKQIELLIEESEPGI 476 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPT 419 V ADE+G+ Q++ NL++NA+K+T GR+ + G + ++D G GIAE Sbjct: 477 KVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVLLQVQDTGIGIAEKYQAR 536 Query: 420 VLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + F + A G GLGL I + ++ + G + SK+ EG LP Sbjct: 537 LFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKVGEGSTFSVRLPR 591 >gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1129 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 74/358 (20%), Positives = 154/358 (43%), Gaps = 8/358 (2%) Query: 119 LCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQA 178 W L+ + + K +++ +I + + F++ + + + + Sbjct: 333 ATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEK 392 Query: 179 IMSMHVLDISLAGMLATALSFFTYITYHLFKSNVK-ILSCQAEKDDLIAELEVAKSLSDE 237 + + + + + + + +S + +L +++ D+L L+ + ++E Sbjct: 393 VSAGDLDETMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIQKQNEE 452 Query: 238 TRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRS 297 + N K FLA+ SHELRTPL+ ++G +E + GP+ K + I S Sbjct: 453 ----LQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPI-PANQKYQLDIIINS 507 Query: 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPS 357 GQ L L++++LD ++ G ++++SA+ L + + K I I ++ Sbjct: 508 GQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSD 567 Query: 358 LSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI 417 L V +D + + QV+ NL+ NA+K+T+ G++ ++ + + D G GI + Sbjct: 568 LGLVSSDPQRLEQVMYNLVGNAIKYTSE-GKIVISASVIDDN-IRVQVVDTGQGIPAEYL 625 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + Q + QG GLGL I++ ++ GG + S+ G LP Sbjct: 626 EHIFEPLIQAGQDSSNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLA 683 >gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 751 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 6/250 (2%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E + R+ A + KS FLA++SHE+RTPLNA+LG ++++ + ++ Sbjct: 353 EQAECERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTATPL----SDE 408 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 + ++ +GQ L LI+++LDL +IEAGR EL L + +LQ RA K Sbjct: 409 QRRHVDVFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAK 468 Query: 347 NIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + +D L V D + + Q + NLL NA+KFTA G V + ++ G ++ Sbjct: 469 GLRFVLDVDEDLPAWVSGDRRRVEQALTNLLGNAIKFTAR-GEVSLQAARSAAGGVRFTV 527 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GIA + V F Q I G GLGL I ++ GG + S+ G Sbjct: 528 RDTGIGIAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVG 587 Query: 466 VEVIAILPNT 475 LP Sbjct: 588 STFTLELPLA 597 >gi|323526066|ref|YP_004228219.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323383068|gb|ADX55159.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 657 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 13/280 (4%) Query: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 +E++ + E E + R+ AEE N AK RFLA +SHELRTPL +L + V+E Sbjct: 259 DVHSEREAM-QERERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE 317 Query: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 M + + + I R+ + LI+++LDL+R+ G+ LS + + +++ Sbjct: 318 ---MIADLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSV 374 Query: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 + + + Q K ++ D + V AD ++Q++ NL+ NA KFT GG ++V Sbjct: 375 LELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRT-R 433 Query: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 IS++D G GI +I + +F QG + G+GLGL I +++ HGG Sbjct: 434 DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGT 493 Query: 456 FLIRSKLRE--GVEVIAILP----NTRVLNF-IPEDNHES 488 +S G LP R IPE H + Sbjct: 494 VTAQS-PGAHCGATFTITLPTAAAPARTSQAVIPEPVHPA 532 >gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] Length = 263 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 16/261 (6%) Query: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286 E+E AK +E + + KS FLA+MSHELRTPLN++L ++ + G L+ Sbjct: 5 EVEQAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLS-AK 63 Query: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346 E+ IH SG LL LIN+ILDLS+IE+G L S ++ + A+ K Sbjct: 64 QVEFAKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEAK 123 Query: 347 NIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG----- 400 ++ ++ +L + V D ++QV+ NLLSNA KFT G V +T+ + Sbjct: 124 HLGFSVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFT-SHGNVSLTISLVTSGWTADHP 182 Query: 401 --------QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANH 452 S++D G GI ++ + +F Q + G GLGL I++ + Sbjct: 183 HLLHADAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLL 242 Query: 453 GGQFLIRSKLREGVEVIAILP 473 GG+ + S + G LP Sbjct: 243 GGEIRVESTVNIGSTFTLYLP 263 >gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] Length = 1297 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 9/270 (3%) Query: 214 ILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEV 273 IL AE L + ++ + R AKS FLA MSHE+RTP+N I+G +EV Sbjct: 890 ILRDDAETKMFEEMLSIIQNRINMQRHDL--SAQAKSDFLARMSHEIRTPMNGIIGMTEV 947 Query: 274 IELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVR 333 + E + I + +LL ++N++LD+S+IE+G+ +L S+ D+++ Sbjct: 948 ALR---PDQTEDKRIECLKKIDSASGYLLGILNDVLDMSKIESGKMKLVIDKCSIPDMMK 1004 Query: 334 ECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 ++ + EK+I Q I + DE + Q+++NLLSNAVK++ +GG V +TV Sbjct: 1005 NIDSIMDAKMNEKDITFVQNITLLHDWYYGDELRLNQILVNLLSNAVKYSNLGGHVDLTV 1064 Query: 394 GW----TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM 449 Y ++KDNG GI E + + F Q + + +QG GLGL I+ ++ Sbjct: 1065 KELPVDEKHSDIYFAVKDNGIGIPESKQQLIFQRFEQADDSANARKQGTGLGLAISSRLV 1124 Query: 450 ANHGGQFLIRSKLREGVEVIAILPNTRVLN 479 + S++ +G + RV Sbjct: 1125 HMMDSDIKVASEVGKGSCFSFTVRLERVPE 1154 >gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 411 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + L + ++ A KS F+A+MSHE+RTPLNAI+GFS ++ ++ Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ + + LL ++ ++LDLS+IE+G + S + D++ +L +R + Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLK 283 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + I++ K +++++ + Q+I NL+ NA+KFT G + Y Sbjct: 284 DKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI GE + F + G GLGL ++Q+I+ N GG+ + S++ Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 399 KGSTFWFTLPLK 410 >gi|170078014|ref|YP_001734652.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002] gi|169885683|gb|ACA99396.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002] Length = 672 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 9/246 (3%) Query: 240 KRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQ 299 K AE N AKS+F++++SHELRTPL I F E + E L + ++++ + Sbjct: 414 KEAE-LNKAKSQFISNVSHELRTPLFNIKSFIETL-HEYGDDLTEQQRQDFLETANNETD 471 Query: 300 HLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS 359 L L+N++LDLSR+E+ R + + + + + QL A++K I + ++ L Sbjct: 472 RLTRLVNDVLDLSRLESSRV-YRLDEVDISQPIEQTLRTHQLNARDKEITLTHELATDLP 530 Query: 360 SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR--GQYISIKDNGPGIAEGEI 417 + + QV+ NL+ NA+KFT GG V V I I D G GI + Sbjct: 531 MILGHYDLLLQVLTNLVGNALKFTQAGGCVSVRAYPVPHDPERVRIEISDTGIGIDPEDQ 590 Query: 418 PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 + F + +G GLGL I ++I+ H + + S++ G L V Sbjct: 591 EAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHNSRIHLISEVGIGTTFWFEL---NV 646 Query: 478 LNFIPE 483 PE Sbjct: 647 AQGTPE 652 >gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] Length = 411 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + L + ++ A KS F+A+MSHE+RTPLNAI+GFS ++ ++ Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ + + LL ++ ++LDLS+IE+G + S + D++ +L +R + Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLK 283 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + I++ K +++++ + Q+I NL+ NA+KFT G + Y Sbjct: 284 DKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI GE + F + G GLGL ++Q+I+ N GG+ + S++ Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 399 KGSTFWFTLPLK 410 >gi|150015251|ref|YP_001307505.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149901716|gb|ABR32549.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 682 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 142/273 (52%), Gaps = 6/273 (2%) Query: 212 VKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFS 271 ++ ++ + + L + +E K L + E N + F +++SHEL+TPLN +LG Sbjct: 396 LRDITSRKQIQLLESNIEENKKLISKAT----ELNKMMTEFFSNISHELKTPLNVLLGAV 451 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 +++ L E+ K Y+ + ++ L+ L+N ++D+S+ ++G ++++ +++ + Sbjct: 452 QILSLSGNDKNKLESGK-YLKTMKQNCYRLVRLVNNLIDISKFDSGYFKMNLQNYNVVSV 510 Query: 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHV 391 + + + + A K I++ D + D + +++LNLLSNA+KFT GG++ V Sbjct: 511 IEDITLSVADYANNKGIDLIFDTDVEEKDMAIDLDKIERIMLNLLSNAIKFTDKGGQILV 570 Query: 392 TVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMAN 451 + + IS+KDNG G+ + ++ + FGQ + QG G+GL + +SI+ Sbjct: 571 NM-YDKKDNIVISVKDNGVGMPKDKLNMIFERFGQIDKTLARNSQGSGIGLSLVKSIVDM 629 Query: 452 HGGQFLIRSKLREGVEVIAILPNTRVLNFIPED 484 H G S+ +G E + LP V + + D Sbjct: 630 HNGDIKAFSEFGKGSEFVVKLPVRFVEDKLSSD 662 >gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. 493-89] gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. H 2687] Length = 949 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 230 VAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKE 289 + E + AE+ + +KS FLA++SHELRTPL I+G ++++ + + + Sbjct: 451 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD----R 506 Query: 290 YIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIE 349 + ++ S LL +I++ILD S+IE+ + + S +++ K + Sbjct: 507 LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLG 566 Query: 350 IFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 ++ I+P + + D ++QVI NLLSNA+KFT G + + V G I ++D Sbjct: 567 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHV-RADGDYLSIRVRDT 624 Query: 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 G GI E+ + F Q ++ QG GLGL I + +++ G + S+ G + Sbjct: 625 GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684 Query: 469 IAILPN 474 +P Sbjct: 685 TVRIPL 690 >gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW] gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW] Length = 821 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 141/256 (55%), Gaps = 7/256 (2%) Query: 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNE 285 A +E A ++E E + KS F+A++S++LRTPLNAI+GF+E++ + GPL N Sbjct: 565 ARVEQALRATNEA---LETADRLKSEFIANVSYQLRTPLNAIMGFAEILNNQYFGPL-NP 620 Query: 286 TYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQE 345 EY + + + LL L+N+ILDL+ IEAG L + + + +V ++ + A++ Sbjct: 621 RQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVNGVAMLTRDWARQ 680 Query: 346 KNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 + +++ I + ++ ADEK ++Q + NL+SNAV+FT GGR+ ++ +G +S+ Sbjct: 681 QELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILSARR-AGDEVVLSV 739 Query: 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 +D G GI + + V F + +S G GLGL + +S + HGG+ I S G Sbjct: 740 RDTGIGIPQDDQQRVFGRFERAHH--QSRSGGAGLGLSLVKSFIELHGGRVEIDSAPEHG 797 Query: 466 VEVIAILPNTRVLNFI 481 EV LP L Sbjct: 798 TEVRCHLPTAPALAEP 813 >gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides fragilis 638R] Length = 411 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + L + ++ A KS F+A+MSHE+RTPLNAI+GFS ++ ++ Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ + + LL ++ ++LDLS+IE+G + S + D++ +L +R + Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLK 283 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + I++ + +++++ + Q+I NL+ NA+KFT G + Y Sbjct: 284 DKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI GE + F + G GLGL ++Q+I+ N GG+ + S++ Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 399 KGSTFWFTLPLK 410 >gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 411 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I EL+ + L + ++ A KS F+A+MSHE+RTPLNAI+GFS ++ ++ Sbjct: 168 ITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS----ADDD 223 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 K Y+ + + LL ++ ++LDLS+IE+G + S + D++ +L +R + Sbjct: 224 TEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLK 283 Query: 345 -EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI 403 + I++ + +++++ + Q+I NL+ NA+KFT G + Y Sbjct: 284 DKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHS-GEICFGCRPQGEDEIYF 342 Query: 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLR 463 + D G GI GE + F + G GLGL ++Q+I+ N GG+ + S++ Sbjct: 343 YVSDTGIGIPAGEQDKIFDRFTKLDH----EVPGTGLGLTLSQTIVQNLGGEMGVESEVT 398 Query: 464 EGVEVIAILPNT 475 +G LP Sbjct: 399 KGSTFWFTLPLK 410 >gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] Length = 572 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 9/311 (2%) Query: 178 AIMSMHVLDISLAG--MLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLS 235 ++L + L ++ AL + ++ L + ++A + + Sbjct: 132 PHWQGNLLTVPLEVEKVIVGALIVKVRLLDQDYEFIQSQLLLVTDLICSALTHQLAINRN 191 Query: 236 DETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIH 295 E+RKRAEE A F+A ++HELRTPLN +LG +E+I + + +E + ++ Sbjct: 192 VESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTELSS----SQREIVNNLS 247 Query: 296 RSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKID 355 +SG+ L +IN++LD S+I AG +L +L D+ + RA EK IE + Sbjct: 248 QSGEFLRTIINDLLDFSKINAGMLDLIPKKFALHDLRNTIESIFVNRAIEKQIEFNISVA 307 Query: 356 PSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 ++ D + + Q+ +NL+ NA+KFT G V+V + W + S++D G GIAE Sbjct: 308 SNVPSHFQGDLERITQLFVNLIGNAIKFTEE-GHVNVDIEWDKNQFV-FSVEDTGVGIAE 365 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 T+ F Q + +G GLGL I + ++A G + S + G +P Sbjct: 366 SAHKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVALMNGVIGVTSVVGSGTTFTISIPL 425 Query: 475 TRVLNFIPEDN 485 V D+ Sbjct: 426 QVVDVPAESDS 436 >gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 480 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 13/318 (4%) Query: 158 MLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSC 217 M + +A+ I + SL + + + L +++ + Sbjct: 175 MFLQLIRSLGIATALAIGGMCIAIAFYIKRSLQPLQLMSQLTESISADDLGDVQIQLDNA 234 Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELE 277 E +L DE R E + +F++++SHELRTPL + G+ + Sbjct: 235 PTEVRELAQTF-------DEMLVRLNEALENQRQFVSNVSHELRTPLTLVSGYVQSTLRR 287 Query: 278 TMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECII 337 G + +E + + ++ ++LDL+R ++G + + L ++V E Sbjct: 288 --GANLSPPQREALEIASSEADRTVQMLQDLLDLARADSGHIHFNLESFVLDELVEEVAE 345 Query: 338 MLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTS 397 M + Q I + V D ++QV+LNL+ NAVK++++ V V + Sbjct: 346 MAR---QYTKRVIKVECIKPGIWVKGDINRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVD 402 Query: 398 GRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL 457 GRG I + D G GI + + F + + G GLGL I ++++ GG Sbjct: 403 GRG-RIEVCDRGIGIPLKQQARIFDRFYRVDETRTRSTGGAGLGLSIVKTLVEGMGGSVK 461 Query: 458 IRSKLREGVEVIAILPNT 475 +RS+L +G LP Sbjct: 462 VRSQLNKGSIFTVCLPLQ 479 >gi|260439232|ref|ZP_05793048.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] gi|292808247|gb|EFF67452.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] Length = 440 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 + F A++SHEL+TPL AI G+SE+I+ G +E + +I+ + LL LIN+ Sbjct: 222 MRQEFTANVSHELKTPLTAISGYSELIKNGMAG---SEDIGRFANEIYTNANRLLTLIND 278 Query: 308 ILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKG 367 I++LS ++ G L + + +I C+ ML A+E + + + ++ V ++ Sbjct: 279 IINLSELDRGA-PLEYEDVDISEIAGNCVSMLDFHAKENQVTLHFDGEKTI--VRGNKNK 335 Query: 368 MRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 + +V+ NL NA+++ GG V VTV T +S++DNG GI++ + F + Sbjct: 336 LEEVVYNLCDNAIRYNKAGGEVWVTVKNTPEGKI-LSVRDNGIGISKENQKRIFERFYRV 394 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 + G GLGL I + I+ H + S G + I Sbjct: 395 DKSRSKKTGGTGLGLAIVKHIIEQHNFNIEVISDENTGTTINVI 438 >gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 624 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 24/366 (6%) Query: 122 TLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIM- 180 T++ L T T+ A LL+ L L + P + L + Sbjct: 2 TVVMLESLIRETDALETLTGDALLLVDRDGIILHATALASCFYGLPAPQLTGLPLGLALN 61 Query: 181 SMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRK 240 +I L AL + + H +L + L AK+ +E R+ Sbjct: 62 DSAAREICLPATGRPALVRWEPLPGHGHSLRRVLLRD-------LTPLRAAKTKLEEARE 114 Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 A+ AKS FLA+++HE+RTP+ ILG +E+ + P +EY+ S Q Sbjct: 115 AAKAGERAKSHFLANITHEIRTPMIGILGMTELAMATELSP----KQREYLEMARHSAQS 170 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 LL ++N+I+D +RIE G +EL+ + SL + V E I + + A +K + + + ++ Sbjct: 171 LLTVLNDIVDYARIETGAFELARTPFSLRETVEEVISVFRPLAAKKGLSLTYRCIGAVPQ 230 Query: 361 -VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGR------GQYISIKDNGPGIA 413 + D +RQV++NL+ NAVKFT G V + V G ++D G GI Sbjct: 231 TLVGDPSRLRQVLINLVGNAVKFTDA-GSVVLAVARIGGGQANDQTRLRFEVRDTGIGIP 289 Query: 414 EGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI---- 469 +I + SF Q ++ QG GLGL I + ++ G + + S+ +G Sbjct: 290 GDKIKAIFDSFTQADVSPARRYQGAGLGLAIVRQLVEMMQGSYNVASEEGKGSVFTIEAD 349 Query: 470 AILPNT 475 LP + Sbjct: 350 FSLPVS 355 >gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium Ellin514] gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium Ellin514] Length = 392 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 3/232 (1%) Query: 241 RAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 R +E + F+A++SHELRTPL+ I GF E + N E ++G I + Sbjct: 161 RLKELENTRQEFVANVSHELRTPLSLIKGFVETLIDGA--KDNPELCTRFLGTIEKHTDR 218 Query: 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSS 360 L LI ++L +S++E+G+ ++ + ++L + V + LQ RA KN+++ + L Sbjct: 219 LTFLIEDLLTISKLESGQIVMNLNEVNLNNEVGRAVDDLQSRASGKNVKLQNTLAEDL-K 277 Query: 361 VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTV 420 AD ++QV+ NL+ NA+K+ GG V + G I +KD+GPGI + V Sbjct: 278 ARADADRLQQVLFNLIENAIKYGRTGGNVTIGGKALPGDKVEIWVKDDGPGIPDEARERV 337 Query: 421 LTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 F + A G GLGL I + I+ HGG+ + S+ +G L Sbjct: 338 FERFYRVDRARSRETGGTGLGLAIVKHIVQAHGGEVWVSSEPGQGTTFYFTL 389 >gi|58584388|ref|YP_197961.1| membrane associated signal transduction histidine kinase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418704|gb|AAW70719.1| Membrane associated signal transduction histidine kinase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 475 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 3/253 (1%) Query: 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMG 280 ++ + + ++ E+EN K +F AS++HELRTPLNAI+GF+E+I+ ET+G Sbjct: 212 NTQMLVKQHKTNIELQQMKEALEQENTNKLKFFASVTHELRTPLNAIIGFAELIKNETLG 271 Query: 281 PLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ 340 ++N YKEY+ DI+ +G HLL LIN++LD S+ E+ + + +L I+ C+ ML Sbjct: 272 SMDNYQYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLNMLS 331 Query: 341 LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-SGR 399 + +E I + ++I V AD K M+QVI+NLLSN++KFT G + + + Sbjct: 332 PKLKETGISLEKEIPNRQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKN 391 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 I DNG GI + +I V++ FGQ ++ +G G+GLP+++ ++ GG F I+ Sbjct: 392 LLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRN--EGTGIGLPLSKKLVELMGGTFNIK 449 Query: 460 SKLREGVEVIAIL 472 S+ + G + Sbjct: 450 SEAKLGTTITLNF 462 >gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201] gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201] gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 588 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 737 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 3/229 (1%) Query: 247 LAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 K+ F+A++SHELR+PL +ILGFS + E L+ ET E++G IH + L +LI Sbjct: 508 RLKNDFIANVSHELRSPLFSILGFSSTLLKER-KELDFETTGEFLGIIHDESKRLSSLIE 566 Query: 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK 366 ++L++SRI++G+ + I +V L++ A EK++E ++P V AD Sbjct: 567 DVLNVSRIDSGKVAYKKKIIDPAPVVIGACESLKMMASEKSVEFSIHVEPETMQVNADPD 626 Query: 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++QV++NL NA+KFT G V V++ +++KD+G GI E + + F + Sbjct: 627 ALKQVVINLAVNAIKFTPRDGCVRVSLS-NDAHWMVLTVKDSGVGIPESDYDKIFEKFYR 685 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 + +G GLGLPI + I+A H G + SK G LP + Sbjct: 686 VERPGE-EIEGTGLGLPIVKEIIAAHKGSIEVNSKKDFGSTFFVRLPLS 733 >gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] Length = 1457 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 163/405 (40%), Gaps = 24/405 (5%) Query: 107 RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLS 166 R + VG + G L + L + LL + ++++ F + FL Sbjct: 898 RRTIRVGAVPDGRITLRSGLADTPPADLVVLPVLFEGELLGVIEFASVTPFSELHLSFLE 957 Query: 167 FFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIA 226 + ++ I + + LA A + L ++N ++ + Sbjct: 958 RLVATIGIAVNTIQANRRTEELLAQSQRLAH-ELQEQSAELQRTNAELEEKATLLSEQKG 1016 Query: 227 ELEVAKSLSDETR----KRAEEENLA---KSRFLASMSHELRTPLNAILGFSEVIELETM 279 +E + R ++A++ A KS FLA+MSHELRTP L + E Sbjct: 1017 NIETKNREIEMARLGLEEKAQQLTRASAYKSEFLANMSHELRTP-LNSLLLLARLLAENS 1075 Query: 280 GPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIML 339 E+ IH SG LL LI++ILDLS+IEAGR ++ + + +I Sbjct: 1076 ERNLTPKQIEFARTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVRFEEIRSYVEQAF 1135 Query: 340 QLRAQEKNIEIFQKIDPSLSS-VWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSG 398 +A+EK ++ ++ L V D + ++Q++ NLLSNAVKFT G V + + Sbjct: 1136 APQAEEKGLDFQVRVAKDLPPAVVTDAQRLQQILRNLLSNAVKFT-DNGAVTLRISRAPE 1194 Query: 399 RGQY-------------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIA 445 + ++ D G GI++ ++ + +F Q G GLGL I+ Sbjct: 1195 HAVFDVPALINARQVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSIS 1254 Query: 446 QSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHESTQ 490 + + GG + S +G LP+ + + S Q Sbjct: 1255 RDLARLIGGTITVSSAPNQGSTFTLYLPDVLAPDAVVAPAPPSPQ 1299 >gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716] Length = 619 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 243 EEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLL 302 ++E + F++++SHELRTPL ++ + E + + + E ++G + + ++ Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAI--NDPELAPRFLGVVSDETERMI 428 Query: 303 NLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ-------EKNIEIFQKID 355 +IN++L LSR+++G +L+ +++ ++ + + + +K I + Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYFT 488 Query: 356 PSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEG 415 V D QV+ N+++NAVK++ GG + + T +SI D G GI Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNH-VILSISDQGLGIPRK 547 Query: 416 EIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 ++ + F + A + G GLGL I++ ++ GGQ + S +G LP Sbjct: 548 DLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26] gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293] gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293] gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26] Length = 588 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 + +KS FLA+MSHE+RTPL AI+G++E++ + + E + IH +G+HLL +I Sbjct: 763 SHSKSEFLANMSHEIRTPLTAIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTII 822 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWAD 364 ++ILDLS+IEAG+ + ++ S+ +++ + L+ RA K + + ++ ++ + +D Sbjct: 823 SDILDLSKIEAGKMSIEQTDTSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSD 882 Query: 365 EKGMRQVILNLLSNAVKFTAIGGRVHVTVG---WTSGRGQYISIKDNGPGIAEGEIPTVL 421 +RQ+++NL+ NA+KFT G + +TV I+D G G+ + + + Sbjct: 883 PTRLRQILMNLVGNAIKFTEA-GHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIF 941 Query: 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFL-IRSKLREGVEVIAILP 473 +F Q ++ G GLGL I + + G + S+ G A LP Sbjct: 942 QAFSQADTSVTRQYGGTGLGLVICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994 >gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 483 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 29/349 (8%) Query: 146 LIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITY 205 + + +++ V +++++ A++ L+ + L+ T + Sbjct: 144 TVVGVVRFVTSLEGVNGVVGKIAVILISIGLAAVIISVFAAAILSQTIVKPLNDITRVAE 203 Query: 206 HLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLN 265 + K + + D++ + ++ E ++ E K+ F+AS+SHELRTPL Sbjct: 204 EMAKGKFTARAPKRYDDEVGRLADTLNFMAQEIMRQEE----LKNEFIASVSHELRTPLT 259 Query: 266 AILGFSEVIELETMGPLNN--------------------ETYKEYIGDIHRSGQHLLNLI 305 AI G++ + G + E + I + + L L+ Sbjct: 260 AIKGWTITLLSAIRGTSQAGRSDIRENAGVPDRRVYLNLDELIEGLEIITKESERLSELV 319 Query: 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADE 365 E+LD SR EAG +L+ ++L+D + + RA+ + +E + L + ADE Sbjct: 320 EELLDFSRFEAGAIKLNLDKVALVDTLNYIKTQMMPRAKRQAVEFEIYPEEGLPEILADE 379 Query: 366 KGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 ++QV++NLL NA KFT GGRV V ++ I ++D G GI ++P V F Sbjct: 380 NRIKQVLINLLDNAFKFTPAGGRVRVKAE-SANDSVRIIVEDTGCGIPPEDLPHVTKKFY 438 Query: 426 QGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 + KS + G GLGL I I+ HGG+ I S +G V ILP Sbjct: 439 KA----KSKQPGSGLGLAICDEIVRLHGGRMEITSAPGKGTRVEVILPV 483 >gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1631 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 6/257 (2%) Query: 236 DETRKRAEEE---NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIG 292 +E R+RAE + AK+ F +++SHE RTPL +LG E + ++ ++ I Sbjct: 347 EEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLEELLARPDAASASD--RQLIE 404 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 HR+G LL L+N +LD SRIEAGR E+ L + + + + + + Sbjct: 405 VTHRNGLRLLKLVNALLDFSRIEAGRIEIHPQPTDLAAFTADLASLFRSAIESAGMTLEV 464 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGI 412 + V D + +V+LNLLSNA KFT G + V++ T+ +S+ D+G GI Sbjct: 465 DCERLPHLVSIDREMWEKVVLNLLSNAFKFTLT-GTISVSLTMTADGSVEMSVADSGIGI 523 Query: 413 AEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 + E+P + F + A + +G G+GL + ++ + G + S+L G +L Sbjct: 524 PKHELPRLFERFHRVEGATGRSVEGSGIGLALVSELVRSQNGAIHVESELGAGARFTVVL 583 Query: 473 PNTRVLNFIPEDNHEST 489 P L+ + +T Sbjct: 584 PPAIALDPAASEAARAT 600 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 81/503 (16%), Positives = 155/503 (30%), Gaps = 67/503 (13%) Query: 19 TGDHLGLEYPSKMDFDREIITLHVESLFRVSPILPLFVLLVANIGTWFTQNPIFPMWS-- 76 T D P + + R P+ +G F +P +++ Sbjct: 871 TKDSRYGRNPPHRGMPDGHLQV------RSYLAAPVVSRTGEVLGGLFFGHPTPGVFTTR 924 Query: 77 -----------LITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWLLVGQIAIGLC----- 120 T A ++ + K E L G++ + Sbjct: 925 SERYVEGIAAQAATAIDNARLYQAAQREIAERTKAQEALRELNETLEGRVIEAVADRDRL 984 Query: 121 WTLLT-LVEPGTWTPEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAI 179 W + L+ + E + S T ++ + L+ + +V A + Sbjct: 985 WDVSEDLLLVASVDGELQRVSPSWTRVLGHDMHWLALHSYFSLIHADDLALVKANLAELR 1044 Query: 180 MSMHVLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETR 239 + + L + +I + L L + + + + E Sbjct: 1045 RTGAPMR--FENRLRHIDGSWRWIAWTL------SLDPDTRRIHGVGRDVTSDRETQEAL 1096 Query: 240 KRAEEENL--AKSRFLAS----MSHELRTPLNAILGFSEVIELETMGPLNNETY-KEYIG 292 + AEE K + + ++H+ L I G +++ + G + + Sbjct: 1097 RHAEEALRVAQKMEAIGNLTGGVAHDFNNLLQVIGGNLQLLSDDVAGDERPAQRVRNALA 1156 Query: 293 DIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQ 352 + R + L +++L R R L+ ++L VR M++ RA IEI Sbjct: 1157 GVARGAK----LASQLLAFGR----RQPLAPKVVNLGRFVRGLDDMMR-RALGDGIEIET 1207 Query: 353 KIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVT--------------VGWTSG 398 + L + D + +LNL NA G++ + V G Sbjct: 1208 IVSGGLWNTLVDPFQVENALLNLAINARDAMDGHGKLTIEAGNASLDDAYAKRHVDVEPG 1267 Query: 399 RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 + +++ D G G++ V F K QG GLGL + + GG I Sbjct: 1268 QYVMVAVTDTGSGMSADVQEHVFEPFF----TTKPEGQGTGLGLSMVYGFVKQSGGHVKI 1323 Query: 459 RSKLREGVEVIAILPNTRVLNFI 481 S+ G + LP R + Sbjct: 1324 YSEPGHGTTIRLYLPRVREEEDL 1346 >gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1135 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 15/337 (4%) Query: 149 LSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHLF 208 L + L +L A++L + V +++ + L + F + + + Sbjct: 575 LGVLGLIIGLLSLALWLIYSQVSLSVVASPQETGETLYQAFLKAFLVLSLFAGILAWWVV 634 Query: 209 KSNVKILSCQAEKDDL-------IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELR 261 + Q E D I + ++ +E N AKSR++ +SHELR Sbjct: 635 LTRESRHVAQQESDRQTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELR 694 Query: 262 TPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYEL 321 TPLN+ILG+++++ + +K+ +G IHRSG HLL+LI+ +LD+++IEAG+ L Sbjct: 695 TPLNSILGYAQILLRDEAMA---PRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNL 751 Query: 322 SESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAV 380 +S I+ + +++ M+ +A+EK + + + V DEK +RQ+++NLL NAV Sbjct: 752 EQSEIAFPEFLQQLRQMIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAV 811 Query: 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGL 440 ++T G + + + I D G GI +I + F +G+ + G+GL Sbjct: 812 RYTDA-GSITLRASYLRE-TATFEIADTGIGIPAEQIERLFQPFERGNPLRQDN--GLGL 867 Query: 441 GLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 GL I + + A GG+ ++S+ +G L + V Sbjct: 868 GLTITRMLTALMGGELSVKSQEGQGTVFQLRLFLSEV 904 >gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1093 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 10/252 (3%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284 I E + + +++ AE N AKS FL++MSHE+RTP+N ILG +V+ ++ Sbjct: 697 ITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGTSLTS--- 753 Query: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344 + I +G LL L+N+ILDLS+IEAG + E + ++++ + M++ A Sbjct: 754 -DQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDAD 812 Query: 345 EKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV----GWTSGR 399 K +E+ +I L ++ +RQ+++NLL NA+KFT G V + V T G Sbjct: 813 RKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQ-GHVVLEVASTPSLTDGP 871 Query: 400 GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 ++++D G GI + + F Q + + GVGLGL I + + GG+ + Sbjct: 872 RLRLAVRDTGIGIPADKQAVIFDRFTQINASANRQFGGVGLGLAICKKLAELMGGRIAVE 931 Query: 460 SKLREGVEVIAI 471 S +G Sbjct: 932 SAPGQGSTFTLS 943 >gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3] gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3] Length = 588 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 F+A++SHELRTPL + + E + N ++ + ++ L+N +L L Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQ--FLTVTQEETERMIRLVNALLQL 418 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 S++++ + L + + D I + ++E+N+ + + D + QV Sbjct: 419 SKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSKEQNVSFKRSFSKKSRFIDMDTDKITQV 477 Query: 372 ILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAI 431 + N++SNA+K++ GG V + G IS+ D G GI + + + F + A Sbjct: 478 LYNIISNALKYSPEGGTVTYRL-RDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536 Query: 432 KSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 G GLGL IA+ ++ HGG +S+ +G + LP Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMA 580 >gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 939 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 105/413 (25%), Positives = 166/413 (40%), Gaps = 38/413 (9%) Query: 90 GKKVMNSDIKIGEVYVW--RIWLLVGQIAIGLCWTLLTLVEPGTWTPEYLTIYKSATLLI 147 ++ + + ++ + P + + + Sbjct: 279 LRRFEREQDPTSTASRFLQARMAARDAPMSAVALARVSAFDGMKKPPWTVAFVRPEAAFL 338 Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + L A ++ VA+ +++ + ++ A + T + Sbjct: 339 EPIEERTTRDALLLASLIAAIVTAVAVVMAQVLTRPITRLAQAASQLASGKLDTAVEVRS 398 Query: 208 FKS--------NVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHE 259 N Q ++L +E + E + A+ N AKS FLA+MSHE Sbjct: 399 HDEMGTLAEAFNQMARQIQGSFEELEHRVEQRTAELKEAKVAADAANKAKSDFLANMSHE 458 Query: 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRY 319 LRTPLN ILG+++++ +E I IHRSG HLL LIN++LDL++IEA Sbjct: 459 LRTPLNGILGYAQILRRSRG---LSEQDLRGIDVIHRSGAHLLTLINDVLDLAKIEAQAM 515 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNI