HHsearch alignment for GI: 254780703 and conserved domain: PRK11115
>PRK11115 transcriptional regulator PhoU; Provisional.
Probab=100.00 E-value=0 Score=372.12 Aligned_cols=226 Identities=33% Similarity=0.529 Sum_probs=213.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 91137899999999999999999999999999999999964999999999847999999999999999999713976246
Q gi|254780703|r 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASD 80 (229)
Q Consensus 1 ~~~h~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~D 80 (229)
T Consensus 6 ~~~Hi~~~fd~eL~~L~~~vl~Mg~~v~~~l~~a~~al~~~D~~lA~~Vi~~D~~Id~le~~Ie~~~~~llA~~qPvA~D 85 (236)
T PRK11115 6 LNKHISGQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACTRIIAKRQPTASD 85 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 00244899999999999999999999999999999999876999999999865888999999999999998621995678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55542599999999999999999999999831026531013344677999999998764432211258999999999999
Q gi|254780703|r 81 LREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGEL 160 (229)
Q Consensus 81 LR~i~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~i 160 (229)
T Consensus 86 LR~v~s~lki~~dLERIGD~a~~IAk~~~~~~~~-~~~~~~~~i~~m~~~~~~Ml~~al~af~~~D~~~A~~v~~~D~~V 164 (236)
T PRK11115 86 LRLVMAIIKTIADLERIGDVADKIARTALEKFSN-QQQPLLVSLESLGRHTIQMLHDVLDAFARMDLDEAVEIYKEDKKV 164 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999871657-788657799999999999999999999817999999999989999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHH
Q ss_conf 9999999999998532178988999999999986879999999998666653102122311356031
Q gi|254780703|r 161 DAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227 (229)
Q Consensus 161 d~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~~~~~ 227 (229)
T Consensus 165 D~l~~~~~~~l~~~~~~~~~~~~~~~~ll~i~r~LERigDhatNIaE~viy~~tG~~vrH~~~~~~~ 231 (236)
T PRK11115 165 DQEYEGIVRQLMTYMMEDPRTIPSVLTVLWCARSIERIGDRCQNICEYIIYFVKGKDVRHVGGDELD 231 (236)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHH
T ss_conf 8999999999999998791359999999999999999999999999989866327111269878999