Query gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 229
No_of_seqs 118 out of 1832
Neff 8.2
Searched_HMMs 39220
Date Sun May 29 20:26:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780703.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11115 transcriptional regul 100.0 0 0 372.1 28.3 226 1-227 6-231 (236)
2 TIGR02135 phoU_full phosphate 100.0 0 0 372.7 26.8 212 7-218 1-213 (213)
3 COG0704 PhoU Phosphate uptake 100.0 7.9E-34 2E-38 260.8 24.4 226 2-227 6-231 (240)
4 COG1283 NptA Na+/phosphate sym 99.9 6.2E-22 1.6E-26 175.9 25.1 199 10-210 330-530 (533)
5 TIGR02135 phoU_full phosphate 99.4 4.8E-11 1.2E-15 98.1 13.8 99 14-115 113-211 (213)
6 PRK11115 transcriptional regul 99.2 1.6E-09 4E-14 87.3 14.4 109 15-126 123-232 (236)
7 pfam01895 PhoU PhoU domain. Th 99.2 4E-10 1E-14 91.6 10.6 86 124-209 1-87 (87)
8 COG0704 PhoU Phosphate uptake 99.2 2.1E-09 5.3E-14 86.4 13.8 97 15-114 123-219 (240)
9 pfam01895 PhoU PhoU domain. Th 99.1 1E-09 2.7E-14 88.5 10.7 86 20-107 1-86 (87)
10 pfam01865 PhoU_div Protein of 99.0 5.7E-06 1.4E-10 61.9 24.5 179 23-211 19-210 (214)
11 COG1392 Phosphate transport re 98.8 3.2E-05 8.2E-10 56.5 23.4 182 20-211 18-212 (217)
12 COG3273 Uncharacterized conser 98.5 9.6E-06 2.4E-10 60.2 13.2 99 8-110 3-101 (204)
13 COG1283 NptA Na+/phosphate sym 98.3 1.7E-05 4.3E-10 58.5 10.9 99 119-218 335-435 (533)
14 COG3273 Uncharacterized conser 97.7 0.0014 3.6E-08 44.8 11.8 93 117-210 8-100 (204)
15 pfam01865 PhoU_div Protein of 94.4 0.44 1.1E-05 26.9 10.8 18 189-206 195-212 (214)
16 TIGR01013 2a58 sodium-dependen 93.1 0.72 1.8E-05 25.4 16.5 178 19-198 311-496 (497)
17 COG1392 Phosphate transport re 93.0 0.75 1.9E-05 25.3 12.3 18 188-205 196-213 (217)
18 TIGR00153 TIGR00153 conserved 91.5 1.1 2.8E-05 24.1 21.8 196 12-215 16-227 (229)
19 TIGR02418 acolac_catab acetola 70.8 3 7.8E-05 21.0 2.2 91 93-196 313-404 (553)
20 pfam00143 Interferon Interfero 55.5 14 0.00035 16.3 6.7 94 111-204 36-136 (167)
21 TIGR00920 2A060605 3-hydroxy-3 55.0 6.6 0.00017 18.6 1.5 14 86-99 259-272 (988)
22 smart00076 IFabd Interferon al 54.0 14 0.00037 16.1 6.1 77 127-204 19-98 (117)
23 pfam08224 DUF1719 Domain of un 52.1 13 0.00033 16.5 2.6 23 88-110 30-52 (234)
24 PRK00218 hypothetical protein; 50.0 16 0.00042 15.7 7.9 120 15-142 20-143 (207)
25 KOG3758 consensus 49.0 17 0.00044 15.6 18.1 104 7-110 67-175 (655)
26 cd07603 BAR_ACAPs The Bin/Amph 45.7 19 0.00049 15.3 15.9 43 5-48 3-45 (200)
27 cd07638 BAR_ACAP2 The Bin/Amph 44.3 20 0.00051 15.1 14.7 28 6-33 4-31 (200)
28 cd07639 BAR_ACAP1 The Bin/Amph 43.6 21 0.00052 15.0 14.5 68 125-192 78-145 (200)
29 pfam04356 DUF489 Protein of un 40.3 23 0.00058 14.7 7.9 94 15-112 14-109 (190)
30 COG4973 XerC Site-specific rec 29.7 33 0.00085 13.5 2.7 32 1-32 23-54 (299)
31 TIGR00838 argH argininosuccina 27.6 36 0.00092 13.3 12.2 100 42-146 109-232 (469)
32 cd07637 BAR_ACAP3 The Bin/Amph 27.4 36 0.00093 13.3 16.6 143 6-193 4-146 (200)
33 KOG2480 consensus 26.5 32 0.00083 13.6 1.2 23 197-220 459-481 (602)
34 cd00095 IFab Interferon alpha, 25.8 39 0.00099 13.1 6.5 93 111-204 31-130 (152)
35 TIGR01017 rpsD_bact ribosomal 24.8 40 0.001 12.9 1.9 71 6-78 51-123 (217)
36 pfam08945 Bclx_interact Bcl-x 24.0 42 0.0011 12.8 1.9 17 85-101 13-29 (37)
37 pfam10520 Kua-UEV1_localn Kua- 22.1 45 0.0012 12.6 2.2 26 193-220 151-176 (178)
38 pfam11978 MVP_shoulder Shoulde 21.8 46 0.0012 12.5 3.6 40 97-143 49-88 (118)
39 TIGR02889 spore_YpeB germinati 20.3 49 0.0012 12.3 4.3 58 86-145 94-154 (465)
40 pfam01997 Translin Translin fa 20.3 49 0.0013 12.3 16.8 131 15-165 2-151 (186)
No 1
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=100.00 E-value=0 Score=372.12 Aligned_cols=226 Identities=33% Similarity=0.529 Sum_probs=213.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 91137899999999999999999999999999999999964999999999847999999999999999999713976246
Q gi|254780703|r 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASD 80 (229)
Q Consensus 1 ~~~h~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~D 80 (229)
|+.||+++|+.+|+.|++.+..||.+|.+++..++.||.++|.++|++|++.|+.||.++.+|++.|+.+||+|||||+|
T Consensus 6 ~~~Hi~~~fd~eL~~L~~~vl~Mg~~v~~~l~~a~~al~~~D~~lA~~Vi~~D~~Id~le~~Ie~~~~~llA~~qPvA~D 85 (236)
T PRK11115 6 LNKHISGQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACTRIIAKRQPTASD 85 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 00244899999999999999999999999999999999876999999999865888999999999999998621995678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55542599999999999999999999999831026531013344677999999998764432211258999999999999
Q gi|254780703|r 81 LREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGEL 160 (229)
Q Consensus 81 LR~i~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~i 160 (229)
||+++++++++++||||||||.+||+.+...... .+.+....+.+|++.+..|+..+++||.++|.+.|.+++..|++|
T Consensus 86 LR~v~s~lki~~dLERIGD~a~~IAk~~~~~~~~-~~~~~~~~i~~m~~~~~~Ml~~al~af~~~D~~~A~~v~~~D~~V 164 (236)
T PRK11115 86 LRLVMAIIKTIADLERIGDVADKIARTALEKFSN-QQQPLLVSLESLGRHTIQMLHDVLDAFARMDLDEAVEIYKEDKKV 164 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999871657-788657799999999999999999999817999999999989999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHH
Q ss_conf 9999999999998532178988999999999986879999999998666653102122311356031
Q gi|254780703|r 161 DAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227 (229)
Q Consensus 161 d~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~~~~~ 227 (229)
|.+|+++++.++.+|.++|+++..++.+++++|+||||||||+||||+|+|++||+.++|.-....|
T Consensus 165 D~l~~~~~~~l~~~~~~~~~~~~~~~~ll~i~r~LERigDhatNIaE~viy~~tG~~vrH~~~~~~~ 231 (236)
T PRK11115 165 DQEYEGIVRQLMTYMMEDPRTIPSVLTVLWCARSIERIGDRCQNICEYIIYFVKGKDVRHVGGDELD 231 (236)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHH
T ss_conf 8999999999999998791359999999999999999999999999989866327111269878999
No 2
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU; InterPro: IPR008170 This family describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by the Pfam model. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and suggesting that the protein has some second function . .
Probab=100.00 E-value=0 Score=372.69 Aligned_cols=212 Identities=42% Similarity=0.657 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999999999999999999999999996-499999999984799999999999999999971397624655542
Q gi|254780703|r 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIE-GDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIV 85 (229)
Q Consensus 7 ~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~-~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~ 85 (229)
++|+++|..|++++.+||..|..++..++.|+.+ .|.++|++|++.|+.||.++.+|++.|+++||+|||+|+|||+++
T Consensus 1 ~~f~~~L~~L~~~~~~Mg~~v~~~~~~a~~al~~e~D~~lA~~vi~~D~~in~~e~~ie~~~~~~iA~~qP~A~DLR~~~ 80 (213)
T TIGR02135 1 KQFDEELKELRSELLEMGGLVEEQLEDAVKALAEERDKELAREVIEDDDQINQLEVEIEEKCLRLIALQQPVASDLRLII 80 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 90688999999999999999999999999999860169999999999999969988899999999884188278799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999983102653101334467799999999876443221125899999999999999999
Q gi|254780703|r 86 GSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHT 165 (229)
Q Consensus 86 ~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~ 165 (229)
+++++++|||||||+|.+||+++.++...+.+......|..|++.+..|++.+.+||.+.|.++|..+++.|+.||++|+
T Consensus 81 ~~~k~~~DLERiGD~A~~IAk~~~~l~~~~~~~~~~~~l~~m~~~~~~ml~~~~~af~~~d~~~A~~v~~~D~~~D~~y~ 160 (213)
T TIGR02135 81 SIIKISTDLERIGDLAKNIAKRALRLKEEDAKPEVLEELEKMGKLALKMLKDALDAFANKDAELARQVAEMDERVDELYR 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999735999999999999999862010321358989999999999999999999863788999999998899999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 99999998532178988999999999986879999999998666653102122
Q gi|254780703|r 166 SLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQP 218 (229)
Q Consensus 166 ~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~ 218 (229)
++++.++.+|.++|.++..++.+++++|||||||||++||||+|+|++||+.+
T Consensus 161 ~~~~~l~~~m~~~~~~~~~~~~~~~~~~~lERiGDH~~NIae~v~y~~tG~~~ 213 (213)
T TIGR02135 161 QIFRELVTYMKEDPRNIERALDVLFVARYLERIGDHATNIAERVIYIVTGKIV 213 (213)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998730698308899999999999987999999999999999814889
No 3
>COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-34 Score=260.83 Aligned_cols=226 Identities=40% Similarity=0.540 Sum_probs=211.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 11378999999999999999999999999999999999649999999998479999999999999999997139762465
Q gi|254780703|r 2 SCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDL 81 (229)
Q Consensus 2 ~~h~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DL 81 (229)
.-|..+.|..+|..+...+..|+..+..++..+..++...|.+.++.++..+..||.++.++++.|+.+++++||+|.||
T Consensus 6 q~~~~~~~~~~L~~~~~~~~~m~~~~~~~l~~~~~al~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ia~~~pva~dl 85 (240)
T COG0704 6 QKTGRSTYIVSLPKLWVRLLGMGAGVEVQLEDALEALLISPKELAEEVIELDEKIDDLEAEIEEEAIRLIALQQPVASDL 85 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 88744069865317788886101333889986699997198888888987798887888889999999999866335518
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55425999999999999999999999998310265310133446779999999987644322112589999999999999
Q gi|254780703|r 82 REIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELD 161 (229)
Q Consensus 82 R~i~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id 161 (229)
|++.+.++++.++|||||++.++|+....+.....+.++...+..|+..+..|+++++++|.+.|.++|..+.+.|+++|
T Consensus 86 r~i~~~~~~~~dleriGd~a~~ia~~~i~~~~~~~~~~~~~~l~~m~~~~~~Ml~d~~~a~~~~d~~~a~~i~~~Dd~vD 165 (240)
T COG0704 86 RLIISIIKISADLERIGDEAVEIAKNAIVLQSDEPDLKILEELRRMGEIALSMLKDALDALANRDPELARDIIERDDEVD 165 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999998577888999999888831047876342999999999999999999999998589999999999899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHH
Q ss_conf 999999999998532178988999999999986879999999998666653102122311356031
Q gi|254780703|r 162 AMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227 (229)
Q Consensus 162 ~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~~~~~ 227 (229)
++|..+.+.+...+.+++.++..++.+++++|++|||||||+|||++++|+.+|+.+.......++
T Consensus 166 ~ly~~~~r~l~~~~~e~~~~i~~~~~~~~~~r~lERigDha~nIa~~~~y~~~g~~~~~~~~~~~~ 231 (240)
T COG0704 166 RLYFLLLRQLLTYMMEDPRNIRDLVGLLLIARNLERIGDHAVNIAERVIYLVTGERAALEVLDEED 231 (240)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999999875286438999999999999999999999999999999852064377788888
No 4
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.2e-22 Score=175.87 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999964999999999847999999999999999999713976246555425999
Q gi|254780703|r 10 DEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIK 89 (229)
Q Consensus 10 ~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~ 89 (229)
.-.|.+.+.++.+|++.++.|+..+.+++.. |.+..+++.+.|+.+|+++.+|..|...+ ++.....+|-|.....+.
T Consensus 330 ~~aL~~A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~l-s~~~Lse~es~r~~~iid 407 (533)
T COG1283 330 VVALANAAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARL-SKEGLSEEESRRWAEIID 407 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
T ss_conf 9999998899999999999999999999851-55889999977999999999999999984-534489788998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998310--265310133446779999999987644322112589999999999999999999
Q gi|254780703|r 90 IAADLERIGDLAKNTAKRVLALQM--FGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSL 167 (229)
Q Consensus 90 i~~dlERIgD~a~~Ia~~~~~~~~--~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l 167 (229)
.+.|+|+||||..+++....+... .++++..++++.++++.+.+.++.++++|.++|.+.|+.+.+..+.+++++++.
T Consensus 408 ~~~~LE~IgDiie~l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~ 487 (533)
T COG1283 408 AAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRS 487 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99729999999999999999998568888888899999999999999999999987688899999999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985321789889999999999868799999999986666
Q gi|254780703|r 168 FRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIH 210 (229)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~ii 210 (229)
.+.|++|+.++.|+++.+..++++.|+++||+||..|+|+.+.
T Consensus 488 ~k~H~~Rl~~g~~s~~t~~l~lDii~dlkrIn~h~~siA~~vl 530 (533)
T COG1283 488 SKRHLDRLRDGAASVETSSLHLDILRDLKRINSHIASVAYPVL 530 (533)
T ss_pred HHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999980750033021599999999999999998899985
No 5
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU; InterPro: IPR008170 This family describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by the Pfam model. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and suggesting that the protein has some second function . .
Probab=99.35 E-value=4.8e-11 Score=98.09 Aligned_cols=99 Identities=29% Similarity=0.388 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999649999999998479999999999999999997139762465554259999999
Q gi|254780703|r 14 DFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAAD 93 (229)
Q Consensus 14 ~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~d 93 (229)
......+..|+..+..|+..+..|+.+.|.+.|.+|.+.|+.||.++..+-+..+..+ ..+|.+ .-.+..++.++..
T Consensus 113 ~~~~~~l~~m~~~~~~ml~~~~~af~~~d~~~A~~v~~~D~~~D~~y~~~~~~l~~~m-~~~~~~--~~~~~~~~~~~~~ 189 (213)
T TIGR02135 113 PEVLEELEKMGKLALKMLKDALDAFANKDAELARQVAEMDERVDELYRQIFRELVTYM-KEDPRN--IERALDVLFVARY 189 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC--HHHHHHHHHHHHH
T ss_conf 3589899999999999999999998637889999999988999999999999999873-069830--8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999831026
Q gi|254780703|r 94 LERIGDLAKNTAKRVLALQMFG 115 (229)
Q Consensus 94 lERIgD~a~~Ia~~~~~~~~~~ 115 (229)
||||||||.|||+.+.++...+
T Consensus 190 lERiGDH~~NIae~v~y~~tG~ 211 (213)
T TIGR02135 190 LERIGDHATNIAERVIYIVTGK 211 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9879999999999999998148
No 6
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=99.19 E-value=1.6e-09 Score=87.30 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999996499999999984799999999999999999971397624655542599999999
Q gi|254780703|r 15 FLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADL 94 (229)
Q Consensus 15 ~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dl 94 (229)
.+...+..|+..|..|+..++.|+.++|.+.|.+|...|+.||.++..+-+.++..+. .+|-. ......++-+++.|
T Consensus 123 ~~~~~i~~m~~~~~~Ml~~al~af~~~D~~~A~~v~~~D~~VD~l~~~~~~~l~~~~~-~~~~~--~~~~~~ll~i~r~L 199 (236)
T PRK11115 123 PLLVSLESLGRHTIQMLHDVLDAFARMDLDEAVEIYKEDKKVDQEYEGIVRQLMTYMM-EDPRT--IPSVLTVLWCARSI 199 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCH--HHHHHHHHHHHHHH
T ss_conf 6577999999999999999999998179999999999899998999999999999998-79135--99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf 999999999999999831026-53101334467
Q gi|254780703|r 95 ERIGDLAKNTAKRVLALQMFG-VPRKLVWTIEP 126 (229)
Q Consensus 95 ERIgD~a~~Ia~~~~~~~~~~-~~~~~~~~l~~ 126 (229)
|||||||.|||+.+.++...+ +-+...+++.+
T Consensus 200 ERigDhatNIaE~viy~~tG~~vrH~~~~~~~~ 232 (236)
T PRK11115 200 ERIGDRCQNICEYIIYFVKGKDVRHVGGDELDK 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 999999999999898663271112698789998
No 7
>pfam01895 PhoU PhoU domain. This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif.
Probab=99.17 E-value=4e-10 Score=91.57 Aligned_cols=86 Identities=31% Similarity=0.549 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46779999999987644322112589999999999999999999999998532-17898899999999998687999999
Q gi|254780703|r 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMM-EDPRNITLCTHLLFCSKNIERIGDHV 202 (229)
Q Consensus 124 l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~-~~~~~~~~~~~~~~i~r~lERigDh~ 202 (229)
+.+|++.+.+|+..++++|.++|.+.|..+...++.+|+++..+.+.++..+. ..+..+..++.++.++++||||||||
T Consensus 1 l~~m~~~v~~~~~~a~~~~~~~d~~~a~~i~~~e~~id~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERIgD~~ 80 (87)
T pfam01895 1 LLRMGELVEEMLDDALEALENRDVELAREVIELDDEIDRLYREIEEELLELLALQQPLDLRLVISLLLIARDLERIGDHA 80 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95889999999999999987599999999998456779999999999999998779755999999998605799999999
Q ss_pred HHHHHHH
Q ss_conf 9998666
Q gi|254780703|r 203 TNIAETI 209 (229)
Q Consensus 203 ~nIae~i 209 (229)
.|||+.+
T Consensus 81 ~nIae~~ 87 (87)
T pfam01895 81 VNIAEAV 87 (87)
T ss_pred HHHHHHC
T ss_conf 9887019
No 8
>COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.1e-09 Score=86.40 Aligned_cols=97 Identities=30% Similarity=0.423 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999996499999999984799999999999999999971397624655542599999999
Q gi|254780703|r 15 FLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADL 94 (229)
Q Consensus 15 ~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dl 94 (229)
.+.+.+.+|+..+..|+..+..+|.+.|.+++.++.++|+.+|+++..+-+.+...+ .+.|. +.+.++.+.-+++++
T Consensus 123 ~~~~~l~~m~~~~~~Ml~d~~~a~~~~d~~~a~~i~~~Dd~vD~ly~~~~r~l~~~~-~e~~~--~i~~~~~~~~~~r~l 199 (240)
T COG0704 123 KILEELRRMGEIALSMLKDALDALANRDPELARDIIERDDEVDRLYFLLLRQLLTYM-MEDPR--NIRDLVGLLLIARNL 199 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC--CHHHHHHHHHHHHHH
T ss_conf 299999999999999999999999858999999999989999999999999999987-52864--389999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999983102
Q gi|254780703|r 95 ERIGDLAKNTAKRVLALQMF 114 (229)
Q Consensus 95 ERIgD~a~~Ia~~~~~~~~~ 114 (229)
|||||||.|||+.+..+...
T Consensus 200 ERigDha~nIa~~~~y~~~g 219 (240)
T COG0704 200 ERIGDHAVNIAERVIYLVTG 219 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999852
No 9
>pfam01895 PhoU PhoU domain. This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif.
Probab=99.12 E-value=1e-09 Score=88.54 Aligned_cols=86 Identities=38% Similarity=0.577 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999649999999998479999999999999999997139762465554259999999999999
Q gi|254780703|r 20 IVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGD 99 (229)
Q Consensus 20 i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlERIgD 99 (229)
+..|+..|.+|+..+++++.++|.+.++++...++.+|.++..+.++++..+...+|. +++...+++.+++++|||||
T Consensus 1 l~~m~~~v~~~~~~a~~~~~~~d~~~a~~i~~~e~~id~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~lERIgD 78 (87)
T pfam01895 1 LLRMGELVEEMLDDALEALENRDVELAREVIELDDEIDRLYREIEEELLELLALQQPL--DLRLVISLLLIARDLERIGD 78 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 9588999999999999998759999999999845677999999999999999877975--59999999986057999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780703|r 100 LAKNTAKR 107 (229)
Q Consensus 100 ~a~~Ia~~ 107 (229)
||.|||+.
T Consensus 79 ~~~nIae~ 86 (87)
T pfam01895 79 HAVNIAEA 86 (87)
T ss_pred HHHHHHHH
T ss_conf 99988701
No 10
>pfam01865 PhoU_div Protein of unknown function DUF47. This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Sinorhizobium meliloti. However, the function of this protein is also unknown (Pit stands for Phosphate transport). It is probably distantly related to pfam01895 (personal obs:Yeats C).
Probab=98.96 E-value=5.7e-06 Score=61.88 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996499----9999999847999999999999999999713976246555425999999999999
Q gi|254780703|r 23 MGIVSRKMVDSSVRAFIEGDT----VLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIG 98 (229)
Q Consensus 23 m~~~v~~~l~~~~~al~~~D~----~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlERIg 98 (229)
....+...+..+++++.++|. +.++++.+.|..-|.+.++|.....+- ...|+.+. -++.++..+-.|.
T Consensus 19 ~v~~~v~~~~~~~~~~~~~d~~~~e~~~~~I~~lE~~aD~i~~eI~~~L~~~--~i~P~dR~-----Dil~L~~~~D~i~ 91 (214)
T pfam01865 19 KVSETVMKLIELFEALIRGDYERVEELLKEISELEREADEIKREIRLNLTSG--AFLPVDRG-----DLLELIESQDKIA 91 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHH-----HHHHHHHHHHHHH
T ss_conf 9999999999999999858998899999999999999989999999987626--76888899-----9999999898999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999831026531013344677999999998764432211---------258999999999999999999999
Q gi|254780703|r 99 DLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSR---------STEKTQSICNRDGELDAMHTSLFR 169 (229)
Q Consensus 99 D~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~---------d~~~a~~i~~~e~~id~l~~~l~~ 169 (229)
|++..+|.... +.+...|+++.+.+.+|...+.+....+..++..- ..+.+.++...+.+.|.++.++.+
T Consensus 92 D~i~~~a~~l~-l~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~e~~~~I~~lE~e~D~~~~~~~~ 170 (214)
T pfam01865 92 DAAEDIAKLLT-LRKFSFPEEFKDEFLAMLKKTVKAAHLLAEAIEELERLLEGAFRGKDIIKEIEHLEDEIDQLQIKLLK 170 (214)
T ss_pred HHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999885-05789982467999999999999999999999999998763056889999999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999853217898899999999998687999999999866665
Q gi|254780703|r 170 ELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHY 211 (229)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif 211 (229)
.+... ++..++-..+.+..+...+|.++|+|-++|..+-=
T Consensus 171 ~Lf~~--e~~~~~~~~i~l~ei~~~Le~iaD~~Edvad~l~~ 210 (214)
T pfam01865 171 KLFSR--EDASNPKDGLILSEIIEKLGNVSDRAEDAADRISI 210 (214)
T ss_pred HHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98705--56689999999999999999999999999999999
No 11
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=98.78 E-value=3.2e-05 Score=56.50 Aligned_cols=182 Identities=21% Similarity=0.231 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999649----99999999847999999999999999999713976246555425999999999
Q gi|254780703|r 20 IVEMGIVSRKMVDSSVRAFIEGD----TVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLE 95 (229)
Q Consensus 20 i~~m~~~v~~~l~~~~~al~~~D----~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlE 95 (229)
...+...+...+..+++++..++ .+.++.|...+.+-|.+.++|......- ..-|+-+. .++..+.-+-
T Consensus 18 h~~~v~~~v~~~~~~f~~~~~g~~~~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~--~flP~~R~-----Dil~L~~~~D 90 (217)
T COG1392 18 HLEKVAETVKLLAPAFEALRRGDYEDAEELLKEIKDLEHEADEIKREIRLELYKG--FFLPFDRE-----DILELIESQD 90 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHH-----HHHHHHHHHH
T ss_conf 9999999999999999999807701389999999999998608999999997833--43878899-----9999999998
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999983102653101334467799999999876443221125---------8999999999999999999
Q gi|254780703|r 96 RIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRST---------EKTQSICNRDGELDAMHTS 166 (229)
Q Consensus 96 RIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~---------~~a~~i~~~e~~id~l~~~ 166 (229)
.+.|.+.++|....- .+..+|....+.+.++.+.+.+......+++..-+. ..+.++-..|.+.|.++.+
T Consensus 91 ~i~D~~ed~A~~l~l-~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~~~~~~~i~~eI~~~E~e~D~i~~~ 169 (217)
T COG1392 91 DIADAAEDAAKLLLL-RKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLESADRLLEIIKEIEALEHECDDIQRE 169 (217)
T ss_pred HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999873-4657986447999999999999999999999999998871788999999999988871499999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999853217898899999999998687999999999866665
Q gi|254780703|r 167 LFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHY 211 (229)
Q Consensus 167 l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif 211 (229)
+.+.+.+.-.+ .++..++.+..+.+.++.|+|.|-.+|.++-=
T Consensus 170 l~k~Lf~~e~~--~~~~~~~~~~~i~~~i~~IaD~~edva~rie~ 212 (217)
T COG1392 170 LLKKLFSLETE--INPIDVIILKEIIEKIEDIADRAEDVADRIES 212 (217)
T ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999723245--12589999999999999998999999999999
No 12
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=9.6e-06 Score=60.25 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999649999999998479999999999999999997139762465554259
Q gi|254780703|r 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGS 87 (229)
Q Consensus 8 ~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~ 87 (229)
.|+.+...++.-+.+|-+.+.-|++.++.++..+|.+.|++|...++++|.+..++-.. .+||-+.| .|-+.+.++
T Consensus 3 ~~~~~~~~v~dlLiEmKd~seLMVDLAyssvlf~s~~iAeEVl~LE~rvD~L~~~~k~~--~~LAaR~v--~eae~l~~i 78 (204)
T COG3273 3 EEEYEPRSVKDLLIEMKDTSELMVDLAYSSVLFGSEEIAEEVLELEERVDELNYQAKML--LLLAARSV--EEAESLLSI 78 (204)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCC--CCHHHHHHH
T ss_conf 32126212999999988889999999999998098889999999998999999999999--99983484--518999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998
Q gi|254780703|r 88 IKIAADLERIGDLAKNTAKRVLA 110 (229)
Q Consensus 88 ~~i~~dlERIgD~a~~Ia~~~~~ 110 (229)
+.+++..|+|+|-|.+||+.+.+
T Consensus 79 leva~a~E~iSdAA~DIA~lVl~ 101 (204)
T COG3273 79 LEVANANEKISDAAGDIAKLVLR 101 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999888887778789999983
No 13
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=98.28 E-value=1.7e-05 Score=58.53 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 013344677999999998764432211258999999999999999999999999853217--898899999999998687
Q gi|254780703|r 119 KLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED--PRNITLCTHLLFCSKNIE 196 (229)
Q Consensus 119 ~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~--~~~~~~~~~~~~i~r~lE 196 (229)
....++..|++.+..|+..+.+.+.+ |...+.++...|+.+|.+++++...+..--+++ +.....+..+++..+++|
T Consensus 335 ~A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~~~~LE 413 (533)
T COG1283 335 NAAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLE 413 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999999999851-55889999977999999999999999984534489788998999999997299
Q ss_pred HHHHHHHHHHHHHHHHEECCCC
Q ss_conf 9999999998666653102122
Q gi|254780703|r 197 RIGDHVTNIAETIHYMTTGVQP 218 (229)
Q Consensus 197 RigDh~~nIae~iif~~tG~~~ 218 (229)
+||||..++++.+-+...++..
T Consensus 414 ~IgDiie~l~~~~~kk~~~~~~ 435 (533)
T COG1283 414 HIGDIIERLLELADKKIANGRA 435 (533)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999856888
No 14
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0014 Score=44.79 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31013344677999999998764432211258999999999999999999999999853217898899999999998687
Q gi|254780703|r 117 PRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE 196 (229)
Q Consensus 117 ~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lE 196 (229)
+....+-|.+|-..+.-|++.++.+..-+|.+.|.++...++.+|.+..++....+--- .++..+......+.++...|
T Consensus 8 ~~~v~dlLiEmKd~seLMVDLAyssvlf~s~~iAeEVl~LE~rvD~L~~~~k~~~~LAa-R~v~eae~l~~ileva~a~E 86 (204)
T COG3273 8 PRSVKDLLIEMKDTSELMVDLAYSSVLFGSEEIAEEVLELEERVDELNYQAKMLLLLAA-RSVEEAESLLSILEVANANE 86 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHH
T ss_conf 21299999998888999999999999809888999999999899999999999999983-48451899988999999888
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999986666
Q gi|254780703|r 197 RIGDHVTNIAETIH 210 (229)
Q Consensus 197 RigDh~~nIae~ii 210 (229)
+|+|-+.+||.-|.
T Consensus 87 ~iSdAA~DIA~lVl 100 (204)
T COG3273 87 KISDAAGDIAKLVL 100 (204)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88777878999998
No 15
>pfam01865 PhoU_div Protein of unknown function DUF47. This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Sinorhizobium meliloti. However, the function of this protein is also unknown (Pit stands for Phosphate transport). It is probably distantly related to pfam01895 (personal obs:Yeats C).
Probab=94.37 E-value=0.44 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999986879999999998
Q gi|254780703|r 189 LFCSKNIERIGDHVTNIA 206 (229)
Q Consensus 189 ~~i~r~lERigDh~~nIa 206 (229)
-.++...|++||....|+
T Consensus 195 e~iaD~~Edvad~l~~i~ 212 (214)
T pfam01865 195 GNVSDRAEDAADRISIIL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998
No 16
>TIGR01013 2a58 sodium-dependent inorganic phosphate (Pi) transporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane .; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=93.10 E-value=0.72 Score=25.42 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999996499999999984799999-999999999999971397624655542599999999999
Q gi|254780703|r 19 RIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQ-LERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERI 97 (229)
Q Consensus 19 ~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~-~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlERI 97 (229)
.....|+.-..+++.+..+.....+-.-++|+..++.++. +...|--+.-.+++...-- .+-|.-...+.++..+|.|
T Consensus 311 ~~l~vG~~mt~~~~s~S~~~~~~~p~~~~gv~~L~~~~~~~Lg~nIgt~~t~~~aa~~s~-~e~~~~a~~ia~~~~~fni 389 (497)
T TIGR01013 311 EALLVGDAMTFIIQSSSVFTSALTPLVGKGVISLERAYPLVLGSNIGTTLTAVLAALLSE-EEKLRSALQIALCHVLFNI 389 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 878798999999976689987430244424687887501254223889999998875088-0158999999999999999
Q ss_pred HHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999----999998310265310133446779999999987644322112589999999999999999999999998
Q gi|254780703|r 98 GDLAKNT----AKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLT 173 (229)
Q Consensus 98 gD~a~~I----a~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~ 173 (229)
+|.+... ++.-++ ...++.....++...........|..+.-.++..+...++.+....-.+.-+.......++.
T Consensus 390 ~gi~l~~~~P~t~~~i~-~~~~l~~~~~~~~~~~~~~l~~~f~~~~~~~f~~~~~~~~~L~~~~~~~~~l~~~~~~~~v~ 468 (497)
T TIGR01013 390 SGIVLFYPLPCTRKPIA-LARGLGEDTSKYRWFLIVYLVLNFLLAPSLLFGLDLNLARRLVGVKIPFRILIKFVSVIHVL 468 (497)
T ss_pred HHHHHHHCCCCCHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88998641661002589-88754103641089999999999999999999887656899998767999999999999867
Q ss_pred HHHCC---CCCHHHHHHHHHHHHHHHHH
Q ss_conf 53217---89889999999999868799
Q gi|254780703|r 174 YMMED---PRNITLCTHLLFCSKNIERI 198 (229)
Q Consensus 174 ~l~~~---~~~~~~~~~~~~i~r~lERi 198 (229)
+.+.. |.....+.-+...+|.++|+
T Consensus 469 q~~~~~~L~~~L~~wsflp~~l~sl~~~ 496 (497)
T TIGR01013 469 QLRCPRFLPKSLQTWSFLPDWLRSLQRL 496 (497)
T ss_pred HHCCCCCCHHHHHCCCCCHHHHHHCCCC
T ss_conf 4227871225450410115667521546
No 17
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.75 Score=25.29 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999998687999999999
Q gi|254780703|r 188 LLFCSKNIERIGDHVTNI 205 (229)
Q Consensus 188 ~~~i~r~lERigDh~~nI 205 (229)
+..|+...|++||..--|
T Consensus 196 i~~IaD~~edva~rie~i 213 (217)
T COG1392 196 IEDIADRAEDVADRIESI 213 (217)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999989999999999999
No 18
>TIGR00153 TIGR00153 conserved hypothetical protein TIGR00153; InterPro: IPR002727 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Sinorhizobium meliloti (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) ..
Probab=91.54 E-value=1.1 Score=24.11 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999996499999999984799999999999999999971397624655542599999
Q gi|254780703|r 12 ELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIA 91 (229)
Q Consensus 12 ~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~ 91 (229)
.+.+....+..........+..........+.+...++...+..-|....++.-....- .+-|..+ ......+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g--~~~p~~~-----~~~~~~~ 88 (229)
T TIGR00153 16 ELREHLEKVGECVGLLLELFELLKSGNWEEDEELRKEIAELEHEGDEIKREIRLKLPKG--AFLPVDR-----EDLLELA 88 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHH-----HHHHHHH
T ss_conf 68999999999999999999998743345788999999987755556667654310000--2120036-----7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------HHHHHHHHH
Q ss_conf 999999999999999999831026531013344677999999998764432211------25---------899999999
Q gi|254780703|r 92 ADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSR------ST---------EKTQSICNR 156 (229)
Q Consensus 92 ~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~------d~---------~~a~~i~~~ 156 (229)
..+..+.|.+.+++.... ..+..+|...+.++..+.....+++....+++..- +. .....+-..
T Consensus 89 ~~~d~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (229)
T TIGR00153 89 ELLDELLDELEDAAGLYL-LRKFGFPEELRDEFLLLLKVTLDLINLLHEVVEALEKLLEGGLSGKELNLALDIVPEIEDL 167 (229)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 988999888877777776-6442141678899999999889999999999999998750465435788888888888876
Q ss_pred HHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
Q ss_conf 99999-999999999998532178988999999999986879999999998666653102
Q gi|254780703|r 157 DGELD-AMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215 (229)
Q Consensus 157 e~~id-~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG 215 (229)
++.+| ....++...+...-..+..++..+..+..+...+--++|.+...+..+..+..+
T Consensus 168 ~~~~dd~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (229)
T TIGR00153 168 EDEIDDLIQGKLYKKLYNLESRDRSGPLDGLLLVKFVEKLGNVSDLAEDAGDRLEILLLG 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 666557888788988874332100003789999999999888777766420021131001
No 19
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=70.81 E-value=3 Score=20.96 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998310-2653101334467799999999876443221125899999999999999999999999
Q gi|254780703|r 93 DLERIGDLAKNTAKRVLALQM-FGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFREL 171 (229)
Q Consensus 93 dlERIgD~a~~Ia~~~~~~~~-~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~ 171 (229)
++|=|||.+.++.....++.+ ..+++...+.|+++-......=.-..+ .+.+..+.+=+ +-|+.+.+.+
T Consensus 313 ~~eLvGdia~tl~~l~~~~~~~~~L~~~~~~~L~~l~~~~~~~~~~~~~--~~~~~Gl~HPL----~ii~~~Q~~v---- 382 (553)
T TIGR02418 313 DLELVGDIASTLDLLAERVEGFYELPEDAQDILEDLKQQIEELDEVKAD--LKQAHGLLHPL----EIIKAMQAIV---- 382 (553)
T ss_pred CHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--HHHCCCCCCCH----HHHHHHHHHC----
T ss_conf 1443257277799995862466105888999999999999865317875--21068630538----8999999744----
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9853217898899999999998687
Q gi|254780703|r 172 LTYMMEDPRNITLCTHLLFCSKNIE 196 (229)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~i~r~lE 196 (229)
.+ +=.-+++.|++|+.++|||.
T Consensus 383 ~d---D~Tvt~D~GShyIWmARyf~ 404 (553)
T TIGR02418 383 TD---DVTVTVDIGSHYIWMARYFK 404 (553)
T ss_pred CC---CCEEEEECCHHHHHHHHHHC
T ss_conf 89---81698704305888887622
No 20
>pfam00143 Interferon Interferon alpha/beta domain.
Probab=55.47 E-value=14 Score=16.30 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHCCCCCCCHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHH
Q ss_conf 3102653101334--4--677999999998764432211258999999999999999999999---99985321789889
Q gi|254780703|r 111 LQMFGVPRKLVWT--I--EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFR---ELLTYMMEDPRNIT 183 (229)
Q Consensus 111 ~~~~~~~~~~~~~--l--~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~---~~~~~l~~~~~~~~ 183 (229)
...+.+|.+..+. + ..-...+.+|+..+..-|.+.+...+=.-...|.-...++..+.. -+.+.+..+.....
T Consensus 36 r~dF~fP~e~~~~~q~qk~qa~~v~~emlQqif~LFs~~~S~a~W~et~le~ll~~L~qQl~~Le~Cl~~~~~~~~~~~~ 115 (167)
T pfam00143 36 RMDFGFPQEMLDGQQFQKAQAISVLHEMLQQIFNLFSTEFSSAAWNETLLDSLLTELHQQLNDLETCLEQEMGEEESPLT 115 (167)
T ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 78899965662743001999999999999999999658997121679999999999999999999999885454478755
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999868799999999
Q gi|254780703|r 184 LCTHLLFCSKNIERIGDHVTN 204 (229)
Q Consensus 184 ~~~~~~~i~r~lERigDh~~n 204 (229)
.....+-+-+||-||..+..+
T Consensus 116 ~~~~~L~lkkYF~rI~~yLk~ 136 (167)
T pfam00143 116 REDSLLALKKYFQRIHLYLKE 136 (167)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 665358999999799999874
No 21
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase; InterPro: IPR004816 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) , . Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds . The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids . Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA . Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I). This entry represents Metazoan class I HMG-CoA reductases, which are membrane-bound glycoproteins that remains in the endoplasmic reticulum after synthesis and glycosylation .; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050661 NADP binding, 0008299 isoprenoid biosynthetic process, 0005789 endoplasmic reticulum membrane.
Probab=55.02 E-value=6.6 Score=18.55 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 59999999999999
Q gi|254780703|r 86 GSIKIAADLERIGD 99 (229)
Q Consensus 86 ~~~~i~~dlERIgD 99 (229)
+++..+=+|-|=|.
T Consensus 259 AClSLvLeLSrs~~ 272 (988)
T TIGR00920 259 ACLSLVLELSRSGR 272 (988)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 78877887410589
No 22
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=54.01 E-value=14 Score=16.14 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999998764432211258999999999999999999999---9998532178988999999999986879999999
Q gi|254780703|r 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFR---ELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVT 203 (229)
Q Consensus 127 m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~---~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~ 203 (229)
-...+.+|+..+..-|.+.....+=.-...++-...++..+.. -+.+.+........ -...+-+-+||-||..+..
T Consensus 19 a~~v~~emlQqif~lF~~~~s~a~W~et~le~~l~~L~~Ql~~Le~c~~~~~~~~~~~~~-~~~~L~lkkYF~rI~~yLk 97 (117)
T smart00076 19 AASVIHEMLQQIFNIFSSPSSSAAWNETLLESLLNELHQQLNHLEACLKQEMEEEDTPLP-RNTHLALRKYFQRIQLYLK 97 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999658998311569999999999999999999999772254368887-7642699999989999998
Q ss_pred H
Q ss_conf 9
Q gi|254780703|r 204 N 204 (229)
Q Consensus 204 n 204 (229)
+
T Consensus 98 ~ 98 (117)
T smart00076 98 E 98 (117)
T ss_pred H
T ss_conf 4
No 23
>pfam08224 DUF1719 Domain of unknown function (DUF1719). This is a domain of unknown function. It may have a role in ATPase activation.
Probab=52.06 E-value=13 Score=16.49 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998
Q gi|254780703|r 88 IKIAADLERIGDLAKNTAKRVLA 110 (229)
Q Consensus 88 ~~i~~dlERIgD~a~~Ia~~~~~ 110 (229)
..++.-+||.+|-|....+.+..
T Consensus 30 ~s~VrRFEwfADgA~eFlR~vE~ 52 (234)
T pfam08224 30 RSTVRRFEWFADGASEFLRFVEF 52 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999986149989999981
No 24
>PRK00218 hypothetical protein; Reviewed
Probab=50.04 E-value=16 Score=15.72 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHH
Q ss_conf 9999999999999999999999999649999999998479999999999999999997139-76246-555425999999
Q gi|254780703|r 15 FLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQ-PMASD-LREIVGSIKIAA 92 (229)
Q Consensus 15 ~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~q-Pva~D-LR~i~~~~~i~~ 92 (229)
.+-+.+.+=|..-.+.++-++.++..-|++...+|... ++.+..-+...+- .|.... |...+ .|++.+++....
T Consensus 20 ~lV~qlA~tG~~~~~~~e~~i~Sl~~~~p~s~~dVyg~---~~~L~~Gl~~L~~-~L~~~~~~~~~e~~RY~~~ll~Ler 95 (207)
T PRK00218 20 QLVQQLARTGQCDEDALETSLNSLLVTNPASTLDVYGG---EANLRLGLETLLN-QLNASSNGLDAELTRYALSLLALER 95 (207)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHCC---HHHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999997589987999999998832799989988398---1878999999999-9868987532699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999831026--531013344677999999998764432
Q gi|254780703|r 93 DLERIGDLAKNTAKRVLALQMFG--VPRKLVWTIEPLAELSLEQLSEILDVY 142 (229)
Q Consensus 93 dlERIgD~a~~Ia~~~~~~~~~~--~~~~~~~~l~~m~~~v~~m~~~a~~af 142 (229)
.|.+-.|....+++.+....... ++ ..-..+......++.+++.-|
T Consensus 96 kL~k~~~~~~~l~~ri~~~~~q~~~f~----~~~~~via~la~iY~dtIS~l 143 (207)
T PRK00218 96 KLSKNPDALNTLGERINQIQRQLEHFD----LLHENVIANLASIYSDTISPL 143 (207)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHCC
T ss_conf 875799999999999999999998545----362999999999999975446
No 25
>KOG3758 consensus
Probab=48.95 E-value=17 Score=15.60 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCHHHH
Q ss_conf 99999999999999999999999999999999--96499999999984799999999999999---99997139762465
Q gi|254780703|r 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAF--IEGDTVLAHKVIDNDVVLDQLERDIGDKA---IITIAKRQPMASDL 81 (229)
Q Consensus 7 ~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al--~~~D~~~a~~v~~~d~~id~~~~~I~~~~---~~lLa~~qPva~DL 81 (229)
+.|-++..+++..+.+....|..|-.-+-+.. .+.....+..++..-+....-...++..+ ..++..+|....++
T Consensus 67 ~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~ 146 (655)
T KOG3758 67 EEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEEL 146 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999999999999999998999999887632225889999999999999999999999999998545670899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55425999999999999999999999998
Q gi|254780703|r 82 REIVGSIKIAADLERIGDLAKNTAKRVLA 110 (229)
Q Consensus 82 R~i~~~~~i~~dlERIgD~a~~Ia~~~~~ 110 (229)
+.+.++-.+..++-++=|.|.+|-.....
T Consensus 147 ~~L~~~g~i~e~FF~vL~rvqeIh~~~~~ 175 (655)
T KOG3758 147 DLLTESGPIDEDFFKVLDRVQEIHDNCRL 175 (655)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98736786118999999999999888999
No 26
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.65 E-value=19 Score=15.26 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 78999999999999999999999999999999999649999999
Q gi|254780703|r 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHK 48 (229)
Q Consensus 5 ~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~ 48 (229)
....++++++.+++.+.+|...+..+++. .+++.......+..
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~k~~~~a-g~~~~~a~~~F~~~ 45 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVDS-GKTYVNANSLFVNS 45 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 59999988999999999999999999999-99999999999999
No 27
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.26 E-value=20 Score=15.11 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999999999
Q gi|254780703|r 6 LSAYDEELDFLSRRIVEMGIVSRKMVDS 33 (229)
Q Consensus 6 ~~~f~~~L~~l~~~i~~m~~~v~~~l~~ 33 (229)
+..++.+++.+.+.+.+|...+..+++.
T Consensus 4 l~~~E~ev~~le~~l~kliK~~k~mi~a 31 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMIDA 31 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899878999999999999999999999
No 28
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.55 E-value=21 Score=15.04 Aligned_cols=68 Identities=6% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67799999999876443221125899999999999999999999999985321789889999999999
Q gi|254780703|r 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCS 192 (229)
Q Consensus 125 ~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~ 192 (229)
..|...+..++..-+..|.+.|+..+.+....=++.-+.|+.....+...-++.+..+..+-.-+...
T Consensus 78 ~~L~~q~~~~l~~pL~~F~k~dl~~vKe~kK~FdK~s~~~d~al~k~~~~~k~K~~e~~Ea~~~l~~~ 145 (200)
T cd07639 78 AELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGA 145 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999886899998868988779999999876156767743899999999999
No 29
>pfam04356 DUF489 Protein of unknown function (DUF489). Protein of unknown function, cotranscribed with purB in Escherichia coli, but with function unrelated to purine biosynthesis.
Probab=40.26 E-value=23 Score=14.69 Aligned_cols=94 Identities=11% Similarity=0.196 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHH-HHHHHHHHHHHH
Q ss_conf 9999999999999999999999999649999999998479999999999999999997-13976246-555425999999
Q gi|254780703|r 15 FLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIA-KRQPMASD-LREIVGSIKIAA 92 (229)
Q Consensus 15 ~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa-~~qPva~D-LR~i~~~~~i~~ 92 (229)
.+-+.+.+=|..-.+.++-++.++..-|++...+|..... .+..-+...+- .|. ..+|...+ .|++.+++....
T Consensus 14 ~lV~qlA~tG~~~~~~~~~~i~Sl~~~~p~s~~~Vyg~~~---~L~~Gl~~L~~-~L~~~~~~~~~e~~RY~~~ll~Ler 89 (190)
T pfam04356 14 QLVQQLARTGQCDEAAFETSLNSLLQTNPASTLDVYGGKE---NLKLGLETLLS-QLNSDSQGKDAELTRYALSLLALER 89 (190)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHH---HHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999758998699999999883279998998849808---79999999999-9768987521689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999831
Q gi|254780703|r 93 DLERIGDLAKNTAKRVLALQ 112 (229)
Q Consensus 93 dlERIgD~a~~Ia~~~~~~~ 112 (229)
-|.+-.|....+++.+....
T Consensus 90 kL~k~~~~~~~l~~ri~~~~ 109 (190)
T pfam04356 90 KLSKNPDALNQLGERIEQIE 109 (190)
T ss_pred HHCCCHHHHHHHHHHHHHHH
T ss_conf 87579999999999999999
No 30
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair]
Probab=29.68 E-value=33 Score=13.54 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91137899999999999999999999999999
Q gi|254780703|r 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVD 32 (229)
Q Consensus 1 ~~~h~~~~f~~~L~~l~~~i~~m~~~v~~~l~ 32 (229)
||.|++..|.++|+.+-.-...|+-..-..++
T Consensus 23 lS~hTl~~Y~rqL~~l~~~~~q~~~~~w~~ld 54 (299)
T COG4973 23 LSPHTLANYRRQLEALIALLAQMGLGSWQQLD 54 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 68888999999999999999972765666569
No 31
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=27.64 E-value=36 Score=13.30 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=47.9
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------------HHC--CCCHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 999999999-847999999999999999999---------------713--97624655542599999-99999999999
Q gi|254780703|r 42 DTVLAHKVI-DNDVVLDQLERDIGDKAIITI---------------AKR--QPMASDLREIVGSIKIA-ADLERIGDLAK 102 (229)
Q Consensus 42 D~~~a~~v~-~~d~~id~~~~~I~~~~~~lL---------------a~~--qPva~DLR~i~~~~~i~-~dlERIgD~a~ 102 (229)
|-+.|-++. -.-+.|+.+...+.+..-.|+ .+| ||+.= =-.+.++..+. +|++|++|...
T Consensus 109 NDQVATDlrl~lr~~v~~~~~~l~~~~~~L~e~Ae~~~~~~mPGYTHLQrAQPi~l-AHhLLAY~~~l~RD~~RL~d~~k 187 (469)
T TIGR00838 109 NDQVATDLRLYLRDHVREIAEALLDLQKVLIELAEKHVETLMPGYTHLQRAQPITL-AHHLLAYAEMLERDYERLQDALK 187 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41789989999999999999999999999999861287366148510135010569-99999999899988999999998
Q ss_pred HHHHH-----HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999-----998310265310133446779999999987644322112
Q gi|254780703|r 103 NTAKR-----VLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRS 146 (229)
Q Consensus 103 ~Ia~~-----~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d 146 (229)
.+... +..-..++++-....++.-+.. ..+++++|...+|
T Consensus 188 R~n~SPLGsGAlAGt~f~iDR~~~A~lLGF~~----~~~NSlDaVSdRD 232 (469)
T TIGR00838 188 RVNVSPLGSGALAGTSFPIDREYTAELLGFDA----VTENSLDAVSDRD 232 (469)
T ss_pred HHCCCCCCCCHHHCCCCCCCHHHHHHHCCHHH----HHHCCHHHHHHHH
T ss_conf 85048865503206898768888976318678----8752046652078
No 32
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.40 E-value=36 Score=13.27 Aligned_cols=143 Identities=10% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89999999999999999999999999999999996499999999984799999999999999999971397624655542
Q gi|254780703|r 6 LSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIV 85 (229)
Q Consensus 6 ~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~ 85 (229)
....+.+++.+.+.+.++...+..+++. .+++...-..-+..+.. + +.+-+ .|
T Consensus 4 i~~~E~~v~~le~~l~kliK~~k~~~~a-gk~y~~a~~~F~~~l~~--------------~-----~~~~~--~d----- 56 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIEA-GKAYATTNKLFVSGIRD--------------L-----SQQCK--KD----- 56 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------------H-----HHHCC--CC-----
T ss_conf 8899988999999999999999999999-99999999999999999--------------9-----97679--95-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999983102653101334467799999999876443221125899999999999999999
Q gi|254780703|r 86 GSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHT 165 (229)
Q Consensus 86 ~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~ 165 (229)
--|+..+.+.|+....+.. .-..|.+.+..++..-++.|..+|...+......-+++-+.|.
T Consensus 57 --~~i~~~l~kF~~~l~ei~~----------------~~~~L~~q~~~~~~~pL~~F~K~dl~~vKe~kK~FdK~s~~~~ 118 (200)
T cd07637 57 --EMISECLDKFGDSLQEMVN----------------YHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLE 118 (200)
T ss_pred --HHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --4889999999999999999----------------9999999999999999999888888899998767879898999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999853217898899999999998
Q gi|254780703|r 166 SLFRELLTYMMEDPRNITLCTHLLFCSK 193 (229)
Q Consensus 166 ~l~~~~~~~l~~~~~~~~~~~~~~~i~r 193 (229)
.........-++.|..+..+-.-+...|
T Consensus 119 ~al~k~~~~~k~k~~e~~Ea~~~l~~~r 146 (200)
T cd07637 119 IALVKNAQAPRHKPHEVEEATSTLTITR 146 (200)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999775355577658999999999999
No 33
>KOG2480 consensus
Probab=26.47 E-value=32 Score=13.62 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHEECCCCCC
Q ss_conf 999999999866665310212231
Q gi|254780703|r 197 RIGDHVTNIAETIHYMTTGVQPYK 220 (229)
Q Consensus 197 RigDh~~nIae~iif~~tG~~~~~ 220 (229)
-+--|+.||+-+ +|++||++|-+
T Consensus 459 GfNAHAANiVtA-vFlAtGQDpAQ 481 (602)
T KOG2480 459 GFNAHAANIVTA-VFLATGQDPAQ 481 (602)
T ss_pred CCCHHHHHHHHH-HHHHHCCCHHH
T ss_conf 721567889999-99982797688
No 34
>cd00095 IFab Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several colony-stimulating factors and several other regulatory molecules. All function as regulators of cellular activty by interacting with cell-surface receptors and activating various signalling pathways. Interferons produce antiviral and antiproliferative responses in cells. Receptor specificity determines function of the various members of the family.
Probab=25.79 E-value=39 Score=13.07 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=48.9
Q ss_pred HHCCCCCCCHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHH
Q ss_conf 3102653101334--4--677999999998764432211258999999999999999999999---99985321789889
Q gi|254780703|r 111 LQMFGVPRKLVWT--I--EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFR---ELLTYMMEDPRNIT 183 (229)
Q Consensus 111 ~~~~~~~~~~~~~--l--~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~---~~~~~l~~~~~~~~ 183 (229)
...+.+|.+.... + ..-...+.+|+..+..-|.+.+...+-.-...|+-.+.++..+.. -+.+.+.. +..+.
T Consensus 31 r~dF~fP~e~~~~~q~qk~qa~~v~~emlQqif~LF~~~~s~a~W~et~le~~l~~L~~Ql~~Le~c~~~~~~~-~~~~~ 109 (152)
T cd00095 31 RADFGFPQELLQGDQFQKAQAASVLHEMLQQIFNIFSTPSSSAAWNETLLESLLNELHQQLNHLETCLEQEMGE-EETPG 109 (152)
T ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCC
T ss_conf 78898977872865112999999999999999999668997021569999999999999999999999873466-67877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999868799999999
Q gi|254780703|r 184 LCTHLLFCSKNIERIGDHVTN 204 (229)
Q Consensus 184 ~~~~~~~i~r~lERigDh~~n 204 (229)
.-...+-+-+||-||..+..+
T Consensus 110 ~~~~~L~lk~YF~rI~~yLk~ 130 (152)
T cd00095 110 PRNTHLHLRKYFQRIQLYLKE 130 (152)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 666416999998799999874
No 35
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=24.76 E-value=40 Score=12.94 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 89999999999999999999-9999999999999964999999999-8479999999999999999997139762
Q gi|254780703|r 6 LSAYDEELDFLSRRIVEMGI-VSRKMVDSSVRAFIEGDTVLAHKVI-DNDVVLDQLERDIGDKAIITIAKRQPMA 78 (229)
Q Consensus 6 ~~~f~~~L~~l~~~i~~m~~-~v~~~l~~~~~al~~~D~~~a~~v~-~~d~~id~~~~~I~~~~~~lLa~~qPva 78 (229)
.+-|--+|.+ ++.+..|.+ +.+++|.+.++.-.......++..+ -.|.++|+.-... .+|-+.-+-+|.|+
T Consensus 51 ~SdYg~QL~E-KQKl~~~YG~i~EkQfr~~f~~A~~~~GntGe~LL~~LE~RLDNvVYRl-GfA~Tr~~ARQLVs 123 (217)
T TIGR01017 51 LSDYGLQLQE-KQKLKFMYGMITEKQFRKYFKEAKKLKGNTGENLLELLESRLDNVVYRL-GFAPTRRAARQLVS 123 (217)
T ss_pred CCHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECC-CCHHHHHHHHHHHH
T ss_conf 7645677899-8999862597441377889999843787278999998611001010212-71200787635640
No 36
>pfam08945 Bclx_interact Bcl-x interacting. This domain is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11.
Probab=23.96 E-value=42 Score=12.84 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 25999999999999999
Q gi|254780703|r 85 VGSIKIAADLERIGDLA 101 (229)
Q Consensus 85 ~~~~~i~~dlERIgD~a 101 (229)
..-+.|+.+|.||||--
T Consensus 13 rpeiwiaqelrrigdef 29 (37)
T pfam08945 13 RPEIWIAQELRRIGDEF 29 (37)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 65889999999987876
No 37
>pfam10520 Kua-UEV1_localn Kua-ubiquitin conjugating enzyme hybrid localisation domain. This domain is part of the transcript of the fusion of two genes, the UEV1, an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localize to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes.
Probab=22.06 E-value=45 Score=12.59 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHEECCCCCC
Q ss_conf 8687999999999866665310212231
Q gi|254780703|r 193 KNIERIGDHVTNIAETIHYMTTGVQPYK 220 (229)
Q Consensus 193 r~lERigDh~~nIae~iif~~tG~~~~~ 220 (229)
--|||++ .-.-.|.+||..||.+|+-
T Consensus 151 ~~Ld~~~--fw~~lE~~i~~~TG~~PR~ 176 (178)
T pfam10520 151 PPLDRIN--FWRKLEMVVTGLTGVKPRA 176 (178)
T ss_pred HHHHHHH--HHHHHHHHHHHHHCCCCCC
T ss_conf 8788877--9999999999983889988
No 38
>pfam11978 MVP_shoulder Shoulder domain. This domain is found in the Major Vault Protein and has been called the shoulder domain. This family includes two bacterial proteins, which suggests that some bacteria may possess vault particles.
Probab=21.78 E-value=46 Score=12.55 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998310265310133446779999999987644322
Q gi|254780703|r 97 IGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYG 143 (229)
Q Consensus 97 IgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~ 143 (229)
|||.|+.||.+++..-.. -.+.+.++.+..++..++=.+.
T Consensus 49 vgd~Ck~iaSrIR~aVa~-------~~Fd~FHkns~~iiR~aVFg~~ 88 (118)
T pfam11978 49 VGDACKAIASRIRGAVAS-------VTFDDFHKNSAKIIRQAVFGAD 88 (118)
T ss_pred HHHHHHHHHHHHHHHHHC-------CCHHHHCCCHHHHHHHHHCCCC
T ss_conf 899999999999999853-------8787975268889998843869
No 39
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239 Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=20.33 E-value=49 Score=12.34 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 599999999999999999999999831026531013344677999999---998764432211
Q gi|254780703|r 86 GSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLE---QLSEILDVYGSR 145 (229)
Q Consensus 86 ~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~---m~~~a~~af~~~ 145 (229)
.+-+...-|..|||+|..+.+.. ..+.+++++-...|..+.+.+.. -+..+..-+..+
T Consensus 94 ~~~~T~kFL~q~GDF~Y~l~~~~--~~g~~L~~~e~~~l~~L~n~a~~l~~~L~~~~~~~~~g 154 (465)
T TIGR02889 94 ELEKTSKFLSQVGDFAYTLSKKD--AEGKSLSDKEYKTLETLYNQAVKLENQLRKVQNKVMQG 154 (465)
T ss_pred CCHHHHHHHHHHCCEEEEEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 62035788764340234433221--25887898999999999999999999999999997318
No 40
>pfam01997 Translin Translin family. Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes Translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen.
Probab=20.26 E-value=49 Score=12.33 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999649999999998-479999999999999999997139762465554259999999
Q gi|254780703|r 15 FLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVID-NDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAAD 93 (229)
Q Consensus 15 ~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~-~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~d 93 (229)
..+..+.+.+..+...=..++-++...|.+.++++++ ....+..+. .++. ..| .+|+--++.....+
T Consensus 2 d~RE~lik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~e~~~~~~~l~--------~~l~-~~~---~~~y~~~~~~~~qE 69 (186)
T pfam01997 2 DRREEIIKISRDITRLSKKAIFALHRGDAENAEEILKEAKELLAKLK--------ELLK-GHP---YYRYSGAWSNALQE 69 (186)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--------HHHC-CCC---HHHHHHHHHHHHHH
T ss_conf 29899999999999999999999967672448999999999999999--------8762-482---68883376699999
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------------99999999999999998310265310133446779999999987644322112589999999
Q gi|254780703|r 94 ------------------LERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICN 155 (229)
Q Consensus 94 ------------------lERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~ 155 (229)
++-+|... ......+.-+..+.|.-++..+.++-..++++...+|.+.+.++++
T Consensus 70 ~vEA~~f~~~l~~~~L~s~~e~~~~l--------~~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~~~~gd~~~~~~i~~ 141 (186)
T pfam01997 70 YVEALTFYHYLETGRLLSLEELGEIL--------GVEVDGFHVTPEDYLLGLFDLTGELMRFALNSVTLGDYERPLEILE 141 (186)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH--------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999179999999999884--------6776557678999998999878799999999983687666999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780703|r 156 RDGELDAMHT 165 (229)
Q Consensus 156 ~e~~id~l~~ 165 (229)
--..+...+.
T Consensus 142 fm~~ly~~f~ 151 (186)
T pfam01997 142 FMEELYAGFR 151 (186)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
Done!