HHSEARCH alignment of GI: 254780703 and SCOP domain: d1vcta1

Alignment
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.50  E-value=2.9e-13  Score=110.65  Aligned_cols=96  Identities=9%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             31013344677999999998764432211258999999999999999999999999853217898899999999998687
Q gi|254780703|r  117 PRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE  196 (229)
Q Consensus       117 ~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lE  196 (229)
                      |..+.+.+.+|+..+..|+..++.||.++|.+.|..++..|+.||+++..+.+.++..+. +|.++..++.++.++++||
T Consensus         3 p~~i~~~l~~M~~~~~~ml~~a~~a~~~~D~~~A~~v~~~d~~ID~l~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~lE   81 (99)
T d1vcta1           3 PKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAAR-NVKEAEQVITILQIANAIE   81 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
T ss_conf             840999999999999999999999998789999999997047899999999999999746-9300999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHE
Q ss_conf             99999999986666531
Q gi|254780703|r  197 RIGDHVTNIAETIHYMT  213 (229)
Q Consensus       197 RigDh~~nIae~iif~~  213 (229)
                      ||||||+|||++|++.+
T Consensus        82 RIgDha~nIae~vi~~i   98 (99)
T d1vcta1          82 DISNAAGDLAKMVLEGV   98 (99)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999998665


SCOP domain information

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: PhoU-like
family: PhoU-like
domain: Hypothetical protein PH0236, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]