RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>gnl|CDD|31048 COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport
and metabolism].
Length = 240
Score = 165 bits (419), Expect = 8e-42
Identities = 91/224 (40%), Positives = 130/224 (58%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
S Y L L R++ MG ++ ++ A + LA +VI+ D +D LE +I
Sbjct: 8 TGRSTYIVSLPKLWVRLLGMGAGVEVQLEDALEALLISPKELAEEVIELDEKIDDLEAEI 67
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWT 123
++AI IA +QP+ASDLR I+ IKI+ADLERIGD A AK + LQ K++
Sbjct: 68 EEEAIRLIALQQPVASDLRLIISIIKISADLERIGDEAVEIAKNAIVLQSDEPDLKILEE 127
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183
+ + E++L L + LD +R E + I RD E+D ++ L R+LLTYMMEDPRNI
Sbjct: 128 LRRMGEIALSMLKDALDALANRDPELARDIIERDDEVDRLYFLLLRQLLTYMMEDPRNIR 187
Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227
LL ++N+ERIGDH NIAE + Y+ TG + E + +ED
Sbjct: 188 DLVGLLLIARNLERIGDHAVNIAERVIYLVTGERAALEVLDEED 231
>gnl|CDD|145194 pfam01895, PhoU, PhoU domain. This family contains phosphate
regulatory proteins including PhoU. PhoU proteins are
known to play a role in the regulation of phosphate
uptake. The PhoU domain is composed of a three helix
bundle. The PhoU protein contains two copies of this
domain. The domain binds to an iron cluster via its
conserved E/DXXXD motif.
Length = 87
Score = 76.3 bits (188), Expect = 7e-15
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 20 IVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMAS 79
++ MG + +M+D ++ A D LA +VI+ D +D+L R+I ++ + +A +QP+
Sbjct: 1 LLRMGELVEEMLDDALEALENRDVELAREVIELDDEIDRLYREIEEELLELLALQQPL-- 58
Query: 80 DLREIVGSIKIAADLERIGDLAKNTAKRV 108
DLR ++ + IA DLERIGD A N A+ V
Sbjct: 59 DLRLVISLLLIARDLERIGDHAVNIAEAV 87
Score = 64.7 bits (158), Expect = 2e-11
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED-PRNI 182
+ + EL E L + L+ +R E + + D E+D ++ + ELL + P ++
Sbjct: 1 LLRMGELVEEMLDDALEALENRDVELAREVIELDDEIDRLYREIEEELLELLALQQPLDL 60
Query: 183 TLCTHLLFCSKNIERIGDHVTNIAETI 209
L LL ++++ERIGDH NIAE +
Sbjct: 61 RLVISLLLIARDLERIGDHAVNIAEAV 87
>gnl|CDD|31474 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 40.2 bits (94), Expect = 5e-04
Identities = 34/196 (17%), Positives = 80/196 (40%), Gaps = 4/196 (2%)
Query: 16 LSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQ 75
+R ++ +G +M++ + +IEGD ++ + +D+L +I + ++K
Sbjct: 336 AAREVLRLGDSIEQMLER-LYEYIEGDAKKVKEIRKLEDAVDRLYEEI-KLYLARLSKEG 393
Query: 76 PMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLV-WT-IEPLAELSLE 133
+ R I A +LE IGD+ + + G ++ L L+LE
Sbjct: 394 LSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLE 453
Query: 134 QLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSK 193
L + V + E + + R + + + L + + ++ + L +
Sbjct: 454 NLRLAISVLVTGDLELARRLVERKKRVRRLERRSSKRHLDRLRDGAASVETSSLHLDILR 513
Query: 194 NIERIGDHVTNIAETI 209
+++RI H+ ++A +
Sbjct: 514 DLKRINSHIASVAYPV 529
Score = 29.8 bits (67), Expect = 0.73
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 29 KMVDSSVR----AFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREI 84
+ ++R + GD LA ++++ + +LER + + R LR+
Sbjct: 449 ALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRSSKRHL----DR------LRDG 498
Query: 85 VGSIK-------IAADLERIGDLAKNTAKRVLALQ 112
S++ I DL+RI + A VL
Sbjct: 499 AASVETSSLHLDILRDLKRINSHIASVAYPVLEES 533
Score = 29.4 bits (66), Expect = 0.89
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED--PRNITL 184
E LE+L E + +K + I + +D ++ + L E
Sbjct: 346 SIEQMLERLYEYI----EGDAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRR 401
Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226
++ + N+E IGD + + E + + E +E
Sbjct: 402 WAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSEDGLEE 443
>gnl|CDD|33084 COG3273, COG3273, Uncharacterized conserved protein [Function
unknown].
Length = 204
Score = 34.1 bits (78), Expect = 0.029
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 20 IVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMAS 79
++EM S MVD + + + G +A +V++ + +D+L K ++ +A R
Sbjct: 15 LIEMKDTSELMVDLAYSSVLFGSEEIAEEVLELEERVDELNYQA--KMLLLLAARSV--E 70
Query: 80 DLREIVGSIKIAADLERIGDLAKNTAKRVL 109
+ ++ +++A E+I D A + AK VL
Sbjct: 71 EAESLLSILEVANANEKISDAAGDIAKLVL 100
>gnl|CDD|35053 COG5494, COG5494, Predicted thioredoxin/glutaredoxin
[Posttranslational modification, protein turnover,
chaperones].
Length = 265
Score = 33.1 bits (75), Expect = 0.073
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 18 RRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPM 77
I+ + + V S V + G ++ + L++ D+ ++A R +
Sbjct: 81 ESILSGQVTKQIDVASLVEKLMLG--IVDSFAATAWLYLNRSLDPFLDQKDFSMAVRGKL 138
Query: 78 ASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVW 122
S L E G + + R G+L + R+L G R++ W
Sbjct: 139 -SGLDEREGDY-LRNVMVREGELLEEWKPRLLRNLSSGFVREIFW 181
>gnl|CDD|38209 KOG2999, KOG2999, KOG2999, Regulator of Rac1, required for
phagocytosis and cell migration [Signal transduction
mechanisms].
Length = 713
Score = 27.6 bits (61), Expect = 2.9
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 24/167 (14%)
Query: 49 VIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVG----------SIKIAADLER-I 97
+ + +V +E D +I + P+AS + E+ ++++ AD R I
Sbjct: 2 SLPSHIVKGAVEIDKEFAQLIPSDQLHPLASTINELCQGWSMNLHEDYALQLMADKNRYI 61
Query: 98 GDLAKNTAKRVLALQMFGVPRKLVWTI-EPLAELSLEQLSEILDVYGSRSTEKT--QSIC 154
+ +N K LQ+ P I E L E + E L S S + T +
Sbjct: 62 TEKNRNEIKNGFILQLCASPSHYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFI 121
Query: 155 NRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDH 201
G ELL ++ED R L + + +H
Sbjct: 122 RCSG----------LELLFSLIEDGRVCMSSELLSTSLRAFSELMEH 158
>gnl|CDD|48114 cd03187, GST_C_Phi, GST_C family, Class Phi subfamily; composed of
plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. The class
Phi GST subfamily has experience extensive gene
duplication. The Arabidopsis and Oryza genomes contain
13 and 16 Tau GSTs, respectively. They are primarily
responsible for herbicide detoxification together with
class Tau GSTs, showing class specificity in substrate
preference. Phi enzymes are highly reactive toward
chloroacetanilide and thiocarbamate herbicides. Some Phi
GSTs have other functions including transport of
flavonoid pigments to the vacuole, shoot regeneration
and GSH peroxidase activity..
Length = 118
Score = 27.1 bits (60), Expect = 4.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 109 LALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTE 148
LA ++ P + T E + E + E+L ++LDVY +R ++
Sbjct: 24 LAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK 63
>gnl|CDD|113294 pfam04518, DUF582, Protein of unknown function, DUF582. This
family contains several uncharacterized chlamydial
proteins.
Length = 380
Score = 26.9 bits (60), Expect = 4.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 24/79 (30%)
Query: 89 KIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTE 148
+I D++R AK VL KL+ I+ A+L+ EQ SE+LD
Sbjct: 212 QIRRDIKRC-----ERAKAVLN--------KLLARIKADAKLTSEQKSELLD-------- 250
Query: 149 KTQSICNRDGELDAMHTSL 167
++ N L+A+ L
Sbjct: 251 ---TLNNYTDNLNAISNQL 266
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 26.5 bits (59), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 132 LEQLSEILDVYGSRSTEKTQSICNR 156
L QL+ IL V G+ S E I +
Sbjct: 216 LHQLNLILGVLGTPSQEDLNCIISL 240
>gnl|CDD|29985 cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA
and denatures the duplex is unknown, a change in the
quaternary structure of the protein involving
dimerization of the N-terminal domain has been observed
and may occur during the enzymatic cycle. This
C-terminal domain contains an ATP-binding site and is
therefore probably the site of ATP hydrolysis..
Length = 242
Score = 26.7 bits (59), Expect = 5.7
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 54 VVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADL 94
+ L QL R + +A KR PM SDLRE GSI+ AD+
Sbjct: 167 IALSQLSRGVESRA----DKR-PMLSDLRE-SGSIEQDADV 201
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain
family includes a large number of catalytically inactive
chitinase-like lectins (chitolectins) including YKL-39,
YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic
mammalian chitinase), as well as catalytically active
chitotriosidases. The conserved domain is an
eight-stranded alpha/beta barrel fold belonging to the
family 18 glycosyl hydrolases. The fold has a
pronounced active-site cleft at the C-terminal end of
the beta-barrel. The chitolectins lack a key active
site glutamate (the proton donor required for hydrolytic
activity) but retain highly conserved residues involved
in oligosaccharide binding. Chitotriosidase is a
chitinolytic enzyme expressed in maturing macrophages,
which suggests that it plays a part in antimicrobial
defense. Chitotriosidase hydrolyzes chitotriose, as
well as colloidal chitin to yield chitobiose and is
therefore considered an exochitinase. Chitotriosidase
occurs in two major forms, the large form being
converted to the small form by either RNA or
post-translational processing. Although the small form,
containing the chitinase domain alone, is sufficient for
the chitinolytic activity, the additional C-terminal
chitin-binding domain of the large form plays a role in
processing colloidal chitin. The chitotriosidase gene is
nonessential in humans, as about 35% of the population
are heterozygous and 6% homozygous for an inactivated
form of the gene. HCGP39 is a 39-kDa human cartilage
glycoprotein thought to play a role in connective tissue
remodeling and defense against pathogens..
Length = 362
Score = 26.4 bits (59), Expect = 6.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 178 DPRNI--TLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKE 221
P NI LCTH+++ + + NI + + Y+
Sbjct: 19 VPENIDPFLCTHIIYAFAGL----NPDGNIIILDEWNDIDLGLYER 60
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,673,553
Number of extensions: 135828
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 24
Length of query: 229
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 138
Effective length of database: 4,297,318
Effective search space: 593029884
Effective search space used: 593029884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)