RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>gnl|CDD|162721 TIGR02135, phoU_full, phosphate transport system regulatory protein
PhoU. This model describes PhoU, a regulatory protein
of unknown mechanism for high-affinity phosphate ABC
transporter systems. The protein consists of two copies
of the domain described by Pfam model pfam01895.
Deletion of PhoU activates constitutive expression of
the phosphate ABC transporter and allows phosphate
transport, but causes a growth defect and so likely has
some second function.
Length = 212
Score = 207 bits (529), Expect = 2e-54
Identities = 85/209 (40%), Positives = 129/209 (61%)
Query: 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
+DEEL L ++EMG + + ++ +VRA E D LA KVI++D ++ LE I +K
Sbjct: 1 KRFDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEK 60
Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
+ IA +QP+A DLR I+ IKI++DLERIGD A N AKR L L+ K + +E
Sbjct: 61 CLRLIALQQPVAKDLRLIISIIKISSDLERIGDYAVNIAKRALRLKEEDAKPKHLEELEK 120
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
+ +L+L+ L + LD + ++ E + + D +D ++ +FREL+TYM E+P NI
Sbjct: 121 MGKLALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQIFRELVTYMKENPENIEAAL 180
Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
+L ++ +ERIGDH TNIAE + Y+ TG
Sbjct: 181 DVLLIARYLERIGDHATNIAERVIYIKTG 209
>gnl|CDD|182974 PRK11115, PRK11115, transcriptional regulator PhoU; Provisional.
Length = 236
Score = 136 bits (344), Expect = 5e-33
Identities = 75/213 (35%), Positives = 122/213 (57%), Gaps = 3/213 (1%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
HI ++ EL+ + +++ MG + + + ++ A D LA +VI+ D ++ +E I
Sbjct: 9 HISGQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAI 68
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGV-PRKLVW 122
+ + IAKRQP ASDLR ++ IK ADLERIGD+A A+ AL+ F + L+
Sbjct: 69 DEACVRIIAKRQPTASDLRLVMAIIKTIADLERIGDVADKIAR--TALEKFSQQHQPLLV 126
Query: 123 TIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNI 182
++E L +++ L ++LD + ++ I D ++D + + R+L+TYMMEDPR I
Sbjct: 127 SLESLGRHTIQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIVRQLMTYMMEDPRTI 186
Query: 183 TLCTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215
+L+C+++IERIGD NI E I Y G
Sbjct: 187 PSVLTVLWCARSIERIGDRCQNICEYIIYFVKG 219
>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2;
Provisional.
Length = 113
Score = 29.6 bits (66), Expect = 0.67
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 76 PMASDLREIVGSIKIAADLERIGDL 100
P A DL++I+GS+ AD +RI L
Sbjct: 18 PSAEDLKDILGSVGADADDDRIELL 42
>gnl|CDD|180528 PRK06321, PRK06321, replicative DNA helicase; Provisional.
Length = 472
Score = 28.3 bits (63), Expect = 1.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 56 LDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADL 94
L QL R + D+A +PM SDLRE GSI+ +DL
Sbjct: 385 LSQLSRKVEDRA-----NHRPMMSDLRE-SGSIEQDSDL 417
>gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional.
Length = 347
Score = 26.2 bits (58), Expect = 7.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 121 VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR 180
++TIE L +LS E L E +G E+ + I R+ E+ S+ +E T + +D +
Sbjct: 194 IYTIEDLLKLSREFLIEYFGKFGVEIYERIRGIDYREVEVSRERKSIGKE--TTLKKDTK 251
Query: 181 NITLCTHLLF 190
+ L
Sbjct: 252 DKEELKKYLK 261
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 26.2 bits (58), Expect = 7.4
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 30 MVDSSVRAFIEG----DTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIV 85
+ DS V E DT+ K+++N + ++ DK II +A R +A +I+
Sbjct: 627 LTDSKVLILDESTSNLDTITEKKIVNNLL-------NLQDKTIIFVAHRLSVAKQSDKII 679
>gnl|CDD|130686 TIGR01625, YidE_YbjL_dupl, AspT/YidE/YbjL antiporter duplication
domain. This model represents a domain that is
duplicated the aspartate-alanine antiporter AspT, as
well as HI0035 of Haemophilus influenzae, YidE and YbjL
of E. coli, and a number of other known or putative
transporters. Member proteins may have 0, 1, or 2 copies
of TrkA potassium uptake domain pfam02080 between the
duplications. The domain contains several apparent
transmembrane regions and is proposed here to act in
transport.
Length = 154
Score = 26.1 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 109 LALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYG 143
L L FG L W I A L + + +L +YG
Sbjct: 32 LLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYG 66
>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional.
Length = 241
Score = 26.1 bits (58), Expect = 8.9
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 75 QPMASDLREIVGSIKIAA-DLERIGDLAKNTAKRVLALQMFGVPRKLV------WTIEPL 127
+ +A++LR + DL +A A+ L+ FG P L+ +T PL
Sbjct: 44 EALAAELRSTGVKAAAYSIDLSNPEAIAPGIAE---LLEQFGCPDVLINNAGMAYT-GPL 99
Query: 128 AELSLEQLSEILDV 141
E+ L ++ +
Sbjct: 100 LEMPLSDWQWVIQL 113
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 25.7 bits (57), Expect = 9.4
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 35 VRAFIEGDTVL----AHK----VIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVG 86
VR ++G VL A K ID VL + R + + I + + +A LRE++
Sbjct: 303 VRGILDGHIVLSRELAAKNHYPAID---VLASVSRVMNE---IVSEEHKELAGKLRELLA 356
Query: 87 SIKIAADLERIGDLAKNTAKRV 108
K A DL IG + + ++
Sbjct: 357 VYKEAEDLINIGAYKRGSNPKI 378
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,729,825
Number of extensions: 238278
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 22
Length of query: 229
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,049,753
Effective search space: 562915667
Effective search space used: 562915667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)