RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein,
structural genomics, PSI-2, protein structure
initiative; 2.40A {Streptococcus pneumoniae TIGR4}
Length = 216
Score = 161 bits (407), Expect = 2e-40
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
+ +D EL L + + +G + + ++ A D +A +I+ D ++Q + I
Sbjct: 3 NQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELT 62
Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
+A +QP SDLR ++ + +DLER+GD AK VL L+ + +
Sbjct: 63 CARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEE-QLHQ 121
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
+ +LSL L+++L + K SI +D ++D + +L +E++ M + +I T
Sbjct: 122 MGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPNGT 181
Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
L+ ++ER D++ NI E + Y+ TG
Sbjct: 182 QYLYIIGHLERFADYIANICERLVYLETG 210
Score = 34.4 bits (78), Expect = 0.023
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFREL---LTYMMEDPRNIT 183
L +L LE S+ L S+ E + I N+D ++ +++ L ++
Sbjct: 19 LGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLR 78
Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226
++ ++ER+GDH+ IA+ + + E +
Sbjct: 79 FVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEEQLHQ 121
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport,
PST, structural genomics, berkeley structural genomics
center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Length = 235
Score = 156 bits (395), Expect = 4e-39
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
Query: 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKA 67
+E+++ + +++ G KM +S+ + +E + LA +VI ++ V+DQ+E +I +KA
Sbjct: 4 LLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKA 63
Query: 68 IITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPL 127
+ + P+ L + I++A +E I D + AK VL L K + I +
Sbjct: 64 MEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPL-KPLEDIPAM 122
Query: 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTH 187
A + E L L ++ + EK+ +C D ++D ++ + ELL YMME P+ +
Sbjct: 123 ANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALL 182
Query: 188 LLFCSKNIERIGDHVTNIAETIHYMTTG 215
LL + NIE I D+ TNI E YM G
Sbjct: 183 LLEIAGNIEIIADYATNIVEVSVYMVQG 210
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.90A {Aquifex aeolicus}
SCOP: a.7.12.1 PDB: 1t8b_A
Length = 227
Score = 153 bits (386), Expect = 4e-38
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%)
Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
+EL+ ++++M + ++ +D + A + + LA +VI D +D LE DI + I
Sbjct: 9 LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCI 68
Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
IA QP A DLR I+G KI +DLER+GD A+N A+R + L P K I ++
Sbjct: 69 RMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAI-LLAEEPPLKPYVNINFMS 127
Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
E+ E +++ + + + T + + +D +D ++ L REL+TY++EDPRNI HL
Sbjct: 128 EIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHL 187
Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
F +++ ERI DH N+AE Y++ G
Sbjct: 188 SFVARHYERIADHAENVAEAAIYLSEG 214
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
regulator, structural genomics, protein structure
initiative, PSI; 2.50A {Geobacillus stearothermophilus}
SCOP: a.7.12.1
Length = 217
Score = 145 bits (367), Expect = 7e-36
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
+ ++L L +++EMG ++ + ++ AF + LA VID D +D LE ++ D
Sbjct: 3 ETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDF 62
Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
A+ IA +QP+A+DLR IV +IKIA+D+ERI D A N AK + + + +
Sbjct: 63 ALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVL- 121
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
+ L+ + +S + Y I + D +D + + LL D +
Sbjct: 122 MYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQMN 181
Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
L ++ IER DH TNIAE + Y+ G
Sbjct: 182 VLALVARYIERTADHATNIAEHLVYLVKG 210
Score = 45.6 bits (107), Expect = 1e-05
Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
+ + +V M ++ MV +++ A+ D LA ++ D D +D+ ++
Sbjct: 103 ACIRIGGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEM 162
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRV 108
+++ +AK + L ++ +A +ER D A N A+ +
Sbjct: 163 -MASLLAVAKTDA--ATLAQMNVLALVARYIERTADHATNIAEHL 204
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1
PDB: 2bkn_A 2bko_A 2bkp_A
Length = 205
Score = 69.8 bits (170), Expect = 5e-13
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
+ E + +EM MVD + + + GD +A +V++ + +D L +
Sbjct: 7 FKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMH-- 64
Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLV 121
+ +++ ++IA +E I + A + AK VL K
Sbjct: 65 --SVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKET 115
Score = 36.7 bits (84), Expect = 0.005
Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
+ + + E + + + +D ++ L + +
Sbjct: 21 MKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLM-MHSVLAARNVKEAEQVI 79
Query: 187 HLLFCSKNIERIGDHVTNIAETIHYM 212
+L + IE I + ++A+ +
Sbjct: 80 TILQIANAIEDISNAAGDLAKMVLEG 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 4e-05
Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 77/251 (30%)
Query: 7 SAYDEE-----------LDFLSRRIVEMGI-----VSRKMVDSSVRAFIEGD---TVLAH 47
A D+E L ++S + + V + ++EG+ + A
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 48 KVIDNDVVLDQLERDIGDKAIITI---AKRQPMASDLREIVGSIKIAADLERIGDLAKNT 104
+ +ND L + K +I A+ + S A + +
Sbjct: 108 LLQENDTTLVK------TKELIKNYITARIM-AKRPFDKKSNSALFRA-------VGEGN 153
Query: 105 AKRVLALQMFG----VPRKLVWTIEPLAELSLEQLSEILDVYGS-------RSTEKTQSI 153
A+ ++A+ FG + E+L ++ Y S E +
Sbjct: 154 AQ-LVAI--FGGQGN------------TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 154 CNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE--RIGDHVTNIAETIHY 211
+ + + T +L + +E+P N +LL S I IG V +A HY
Sbjct: 199 IRTTLDAEKVFTQGL-NILEW-LENPSNTPDKDYLL--SIPISCPLIG--VIQLA---HY 249
Query: 212 MTT----GVQP 218
+ T G P
Sbjct: 250 VVTAKLLGFTP 260
Score = 36.5 bits (84), Expect = 0.005
Identities = 47/314 (14%), Positives = 86/314 (27%), Gaps = 130/314 (41%)
Query: 9 YDEEL--------DFLSRRIVEMGIVSRKMVDSSVRA---FIEGDTVLA-----HKVIDN 52
Y EEL + I +++ +++ A F +G +L D
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 53 DVVLD-----------QLERDIGDKA--IIT--IAKRQPMASDLRE-----------IVG 86
D +L QL A ++T + P +LR +V
Sbjct: 229 DYLLSIPISCPLIGVIQL-------AHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVT 279
Query: 87 SIKIAA--DLERIGDLAKNTAKRVLALQMF--GV------PRKLVW------TIE----- 125
++ IA E + A VL F GV P + ++E
Sbjct: 280 AVAIAETDSWESFFVSVR-KAITVL----FFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 126 P-----LAELSLEQLSEILDVYGSRSTEKTQSICNRD-GELDAMHTSLFRELLTYMMEDP 179
P ++ L+ EQ+ + ++ N + SL
Sbjct: 335 PSPMLSISNLTQEQVQDYVNK------------TNSHLPAGKQVEISLV--------NGA 374
Query: 180 RNIT----------LCTHL--LFCSKNIE--RIGDH------VTN----IAETIH--YMT 213
+N+ L L ++ RI +N +A H +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 214 TGVQPYKERVRKED 227
+ + K +
Sbjct: 434 PASDLINKDLVKNN 447
Score = 32.6 bits (74), Expect = 0.079
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 26/77 (33%)
Query: 57 DQLERDIGDKAIITIAKRQ---PM-----ASDLREIVGSIKIAADLERIGDLAKNTAKRV 108
D + +D+ + + + P+ SDLR + GSI ERI D V
Sbjct: 437 DLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSI-----SERIVDCI--IRLPV 488
Query: 109 ---LALQM-------FG 115
Q FG
Sbjct: 489 KWETTTQFKATHILDFG 505
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 42.5 bits (99), Expect = 8e-05
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 26 VSRKMVDSS-VRAFIEGDTVLAHKVIDN---DVVLDQLERDIGDKAIITIAKRQPMASDL 81
+ +++V++S VR + +T L HKV++ D Q+E I R + D
Sbjct: 744 LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVE----------IQPRANIQLDF 793
Query: 82 REI--VGSIK-IA-ADLERIGDLAKNTAKRVLALQMF------GVPRKLVWTIEPLAELS 131
E+ +K IA A+LE + DL +RV+ + F G R W +E E S
Sbjct: 794 PELKPYKQVKQIAPAELEGLLDL-----ERVIVVTGFAEVGPWGSARTR-WEMEAFGEFS 847
Query: 132 LEQLSEILDVYG 143
LE E+ + G
Sbjct: 848 LEGCVEMAWIMG 859
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.1 bits (74), Expect = 0.054
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 23/53 (43%)
Query: 73 KRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIE 125
++Q A L+++ S+K+ AD D A LA++ T+E
Sbjct: 18 EKQ--A--LKKLQASLKLYAD-----DSAP-----ALAIKA---------TME 47
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural
genomics, joint center for structural genomics, JCSG;
1.93A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.6 bits (61), Expect = 2.1
Identities = 12/125 (9%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 90 IAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGS--RST 147
+A+ ++ + D ++AKR + + + + L + + +D + ++
Sbjct: 99 LASCMDDVIDGINSSAKR-IVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNP 157
Query: 148 EKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAE 207
+ + C + +++ ++ +T + E+ ++ + +E+ D ++ +
Sbjct: 158 KPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEKTTDAAEHVGK 217
Query: 208 TIHYM 212
+ +
Sbjct: 218 ILKNL 222
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2,
protein structure initiative; 2.20A {Streptococcus
pneumoniae TIGR4}
Length = 130
Score = 26.9 bits (59), Expect = 3.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 31 VDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70
DS+ + I GD V + V N +V+D ++RD D+ ++T
Sbjct: 90 FDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLT 129
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
PDB: 2p6b_A 1tco_A* 1mf8_A* 1m63_A* 2jog_A
Length = 521
Score = 25.7 bits (56), Expect = 8.8
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
+ + + L F+ ++ EM + +V D + + + + + I
Sbjct: 345 NFMDVFTWSLPFVGEKVTEMLV--------NVLNICSDDELGSEEDGFDGATAAARKEVI 396
Query: 64 GDKAIITIAKRQPMASDLREIVGSI 88
+K I I K + S LRE S+
Sbjct: 397 RNK-IRAIGKMARVFSVLREESESV 420
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,955,722
Number of extensions: 87325
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 26
Length of query: 229
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 140
Effective length of database: 3,535,514
Effective search space: 494971960
Effective search space used: 494971960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)