RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Aquifex aeolicus [TaxId: 63363]}
Length = 215
Score = 156 bits (396), Expect = 1e-39
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%)
Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
+EL+ ++++M + ++ +D + A + + LA +VI D +D LE DI + I
Sbjct: 9 LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCI 68
Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
IA QP A DLR I+G KI +DLER+GD A+N A+R + L P K I ++
Sbjct: 69 RMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAI-LLAEEPPLKPYVNINFMS 127
Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
E+ E +++ + + + T + + +D +D ++ L REL+TY++EDPRNI HL
Sbjct: 128 EIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHL 187
Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
F +++ ERI DH N+AE Y++ G
Sbjct: 188 SFVARHYERIADHAENVAEAAIYLSEG 214
Score = 49.8 bits (118), Expect = 2e-07
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64
+ +E I M + ++MV+ SV +FI+ DT+LA KVI+ D +D+L +
Sbjct: 108 AILLAEEPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLE 167
Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVL 109
+ + + + + +A ERI D A+N A+ +
Sbjct: 168 RELMTYVLEDPRNIKRAMHL---SFVARHYERIADHAENVAEAAI 209
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 153 bits (386), Expect = 2e-38
Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 1/207 (0%)
Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
+E+++ + +++ G KM +S+ + +E + LA +VI ++ V+DQ+E +I +KA+
Sbjct: 4 LNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAM 63
Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
+ P+ L + I++A +E I D + AK VL L + L I +A
Sbjct: 64 EVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPLKPLED-IPAMA 122
Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
+ E L L ++ + EK+ +C D ++D ++ + ELL YMME P+ + L
Sbjct: 123 NQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALLL 182
Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
L + NIE I D+ TNI E YM G
Sbjct: 183 LEIAGNIEIIADYATNIVEVSVYMVQG 209
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 212
Score = 152 bits (385), Expect = 2e-38
Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 1/207 (0%)
Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
+ ++L L +++EMG ++ + ++ AF + LA VID D +D LE ++ D A+
Sbjct: 2 FADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFAL 61
Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
IA +QP+A+DLR IV +IKIA+D+ERI D A N AK + + + + +
Sbjct: 62 WLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVL-MY 120
Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
L+ + +S + Y I + D +D + + LL D + L
Sbjct: 121 RLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQMNVL 180
Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
++ IER DH TNIAE + Y+ G
Sbjct: 181 ALVARYIERTADHATNIAEHLVYLVKG 207
Score = 44.0 bits (103), Expect = 1e-05
Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
+ + +V M ++ MV +++ A+ D LA ++ D D +D+ ++
Sbjct: 100 ACIRIGGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEM 159
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRV 108
+++ +AK + L ++ +A +ER D A N A+ +
Sbjct: 160 -MASLLAVAKTDA--ATLAQMNVLALVARYIERTADHATNIAEHL 201
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 99
Score = 68.8 bits (168), Expect = 3e-13
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 12 ELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITI 71
E + +EM MVD + + + GD +A +V++ + +D L + +++
Sbjct: 2 EPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL-- 59
Query: 72 AKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVL 109
A R + +++ ++IA +E I + A + AK VL
Sbjct: 60 AARNV--KEAEQVITILQIANAIEDISNAAGDLAKMVL 95
Score = 60.7 bits (147), Expect = 1e-10
Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 117 PRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMM 176
P+ + + + + E + + + +D ++
Sbjct: 3 PKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQ-LMMHSVLAA 61
Query: 177 EDPRNITLCTHLLFCSKNIERIGDHVTNIAETI 209
+ + +L + IE I + ++A+ +
Sbjct: 62 RNVKEAEQVITILQIANAIEDISNAAGDLAKMV 94
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 330
Score = 24.3 bits (53), Expect = 8.1
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 161 DAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMT 213
DA T F++LLT R+ L L ++ +R + + +Y+T
Sbjct: 174 DAFAT--FKDLLT------RHKLLSAEFL--EQHYDRFFSEYEKLLHSENYVT 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 848,820
Number of extensions: 38208
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 18
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)