BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 229
Score = 470 bits (1210), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE 60
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE
Sbjct: 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE 60
Query: 61 RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120
RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL
Sbjct: 61 RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120
Query: 121 VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR 180
VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR
Sbjct: 121 VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR 180
Query: 181 NITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229
NITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE
Sbjct: 181 NITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229
>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 26.6 bits (57), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 10 DEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQL 59
D++L+F S + V + + ++ GDT+L HK D++LD L
Sbjct: 69 DDKLEFCSIK------VDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSL 112
>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQL 59
+D++L+F S + VE G ++ + ++ GDT+L HK +VLD L
Sbjct: 67 CWDDKLEFFSIK-VEQGPLT-----THLQNIQPGDTILLHKKSTGTLVLDAL 112
>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 200
Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIG 98
A ITI R+ + S LRE + +K++ + RI
Sbjct: 105 AAITILCREILVSGLREYLAELKVSVPVTRIA 136
>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 410
Score = 24.3 bits (51), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 165 TSLFRELLTYMMEDPRNITLCTHLLF-----CSKNIERIGDHVTNIAETI----HYMTTG 215
++ R L + M DPR + C L + S +GD++ + ++ H++ G
Sbjct: 338 ANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFG 397
Query: 216 VQP 218
P
Sbjct: 398 YIP 400
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 23.5 bits (49), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 30 MVDSSVRA-FIEGDTVLAHKVIDNDVVLDQLERD 62
+ D+ V A + GD+ K + N+V +DQL +D
Sbjct: 287 IFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKD 320
>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 298
Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 25/94 (26%)
Query: 76 PMASDLREIVGSIKIAADL-------------ERIGDLAKNTAKRVLALQM--------F 114
PMA +R+ ++KI D ER DL K A A+Q+ +
Sbjct: 120 PMA--IRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWY 177
Query: 115 GVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTE 148
G R LV+ + E S+E S+ + +Y S S +
Sbjct: 178 G--RALVYQMRGEYEKSIEDFSQAISLYSSISPD 209
>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 59 LERDIGDKAIITIAKRQPMASDLREIVGSIK---IAADLERIGDLAKNTAKRVLALQM 113
L +++G KA++ + P + +I+G +K + + ER+ A+ + + AL++
Sbjct: 302 LPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKL 359
>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1386
Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 189 LFCSKNIERIGDHVTNIAETIH 210
FCS + ++ +HV +++ H
Sbjct: 516 FFCSSQLSQLEEHVNSLSRITH 537
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMH 164
IE E+SL++L+ I+ YG E + + L H
Sbjct: 143 IEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLKPPH 183
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,892
Number of Sequences: 1233
Number of extensions: 5119
Number of successful extensions: 26
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 16
length of query: 229
length of database: 328,796
effective HSP length: 71
effective length of query: 158
effective length of database: 241,253
effective search space: 38117974
effective search space used: 38117974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)