RPSBLAST alignment for GI: 254780704 and conserved domain: TIGR01193

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
 Score =  104 bits (261), Expect = 2e-23
 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 34/240 (14%)

Query: 10  NKVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGE 67
           N VS  YG     L DI+L I  NS T ++G SG GKST  + L             +GE
Sbjct: 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR------SGE 530

Query: 68  IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127
           I+L+G ++    +D   LR  +  + Q P  F  SI +N+  G             D+I 
Sbjct: 531 ILLNGFSL--KDIDRHTLRQFINYLPQEPYIFSGSILENLLLG------AKENVSQDEI- 581

Query: 128 EMSLKKASLFNEVKD-----------RLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
                 A    E+KD            L  + S +SGGQ+QR+ +ARAL  + +V+++DE
Sbjct: 582 ----WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637

Query: 177 PCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
             S LD I    +   +  L++  TI+ V H +  A +  +   + H G ++E+   D++
Sbjct: 638 STSNLDTITEKKIVNNLLNLQDK-TIIFVAHRLSVAKQSDKIIVLDH-GKIIEQGSHDEL 695