RPSBLAST alignment for GI: 254780704 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 55.0 bits (132), Expect = 2e-08
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 48/208 (23%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQR 95
L+G +G GK+T + L T D V +G+ + GK+I + DV
Sbjct: 1969 GLLGVNGAGKTTTFKML-----TGDTTVTSGDATVAGKSILTNISDV------------- 2010
Query: 96 PNPFPKSIYDNVAYGPRIHGL-----------------GNNKADIDQIVEMSLKKASLFN 138
+ N+ Y P+ + G +I+++ S++ L +
Sbjct: 2011 --------HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-S 2061
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE-LR 197
DRL A SGG ++++ A AL P ++L+DEP + +DP A + I +R
Sbjct: 2062 LYADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118
Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMG 225
E +V+ +HSM++ + R A+ G
Sbjct: 2119 EGRAVVLTSHSMEECEALCTRLAIMVKG 2146