>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221

Score = 109 bits (275), Expect = 6e-25 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 16/207 (7%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-S 78 R L ++L I + + A++G SG GKST L L +DN +GE++ +G+++ + S Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG----GLDNPT-SGEVLFNGQSLSKLS 73 Query: 79 SVDVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 S + +LR + +G ++Q + P + +NVA P + G + + + L+K L Sbjct: 74 SNERAKLRNKKLGFIYQFHHLLPDFTALENVAM-PLLIG-KKSVKEAKERAYEMLEKVGL 131 Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 + R+ H S LSGG++QRV IARAL P ++L DEP LD + +L+ EL Sbjct: 132 ----EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 Query: 197 RESLTI--VIVTHSMQQAARVSQRAAM 221 L ++VTH ++ A ++ + M Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEM 214

RPSBLAST alignment for GI: 254780704 and conserved domain: TIGR02211