RPSBLAST alignment for GI: 254780704 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score =  124 bits (314), Expect = 2e-29
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 12  VSVCYGEKR--ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
           +SV Y  +R  AL  ++  +P     AL+GPSG GKST L  L    +        G I 
Sbjct: 326 LSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIA 380

Query: 70  LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
           ++G  +  +  D    R ++  V Q P  F  +I +N+        L    A   +I   
Sbjct: 381 VNGVPLADADADS--WRDQIAWVPQHPFLFAGTIAENIR-------LARPDASDAEIRR- 430

Query: 130 SLKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
           +L++A L   V          +    + LSGGQ QR+ +ARA   +  ++L+DEP + LD
Sbjct: 431 ALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490

Query: 183 PIATASVEELIHELRESLTIVIVTHSMQQAARV 215
               A V E +  L +  T+++VTH +  A R 
Sbjct: 491 AETEALVTEALRALAQGRTVLLVTHRLALAERA 523