RPSBLAST alignment for GI: 254780704 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 47.2 bits (112), Expect = 5e-06
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 36/199 (18%)
Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSVDVVRLRA 87
I ++ V ++GP+G GK+TF++ L + + + G+I ++ + Y+
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDE-----GDIEIELDTVSYKPQYIKADYEG 76
Query: 88 RVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHD 147
V SI + P I+QI++ EV +
Sbjct: 77 TV-------RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD---------REVPE----- 115
Query: 148 ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP----IATASVEELIHELRESLTIV 203
LSGG+ QRV IA L+ + ++ L+DEP + LD +A+ + T
Sbjct: 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA--ENNEKTAF 170
Query: 204 IVTHSMQQAARVSQRAAMF 222
+V H + ++ R +F
Sbjct: 171 VVEHDIIMIDYLADRLIVF 189