RPSBLAST alignment for GI: 254780704 and conserved domain: cd03270

>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226
 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 51/212 (24%)

Query: 22  LFDINLKIPQNSVTALIGPSGCGKST------FLRCLNRMNETIDNCV--FTGE------ 67
           L ++++ IP+N +  + G SG GKS+      +     R  E++      F G+      
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70

Query: 68  ---------IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGN 118
                    I +D K   ++       R+ VG V          IYD +       G+  
Sbjct: 71  DSIEGLSPAIAIDQKTTSRNP------RSTVGTV--------TEIYDYLRLLFARVGIRE 116

Query: 119 NKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVIL--MDE 176
               +  +V++ L   +L      R    A  LSGG+ QR+ +A  +      +L  +DE
Sbjct: 117 R---LGFLVDVGLGYLTL-----SR---SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE 165

Query: 177 PCSALDPIATASVEELIHELRE-SLTIVIVTH 207
           P   L P     + E +  LR+   T+++V H
Sbjct: 166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197