HHsearch alignment for GI: 254780705 and conserved domain: COG1173
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].
Probab=99.53 E-value=1.8e-11 Score=91.87 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999999998626663004
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTA 279 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~ 279 (425)
T Consensus 82 i~G~r~SL~I~~~~~~~~~~iG~~lG~iaG-----y~-gG~vD~ilmri~di~ls~P~lll~i~----l~~~lg---~~~ 148 (289)
T COG1173 82 LYGARISLLIGLLAVLISLVIGTLLGLLAG-----YF-GGWVDRVLMRITDIFLAFPSLLLAIL----LVAILG---PGL 148 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HC-CCHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHC---CCH
T ss_conf 999999999999999999999999999998-----80-76199999999999997659999999----999977---248
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 689753345436689999999985110-6789899870772127777883975332589999999999876779999985
Q gi|254780705|r 280 LVGGLILALMTLPSIIIATGVALRTVP-SSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 (425)
Q Consensus 280 l~g~~~l~~m~lP~i~~~~~~al~~vp-~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~ 358 (425)
T Consensus 149 ~~iiial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLG 228 (289)
T COG1173 149 LNLILALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLG 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98999999994399999999999998776899999984999201249886230289999999999999999999999906
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 359 ~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
T Consensus 229 LG~-----~----pp~pswG~ml~~~~~~~~~~~~w~~l~Pgl~i~l~vl~fnllgdgLrd~~dpr 285 (289)
T COG1173 229 LGV-----Q----PPTPSWGTMLAEGRNYLLTGAWWLVLFPGLAILLTVLAFNLLGDGLRDALDPR 285 (289)
T ss_pred CCC-----C----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 889-----9----89998999999999988704859999989999999999999998899874801