HHsearch alignment for GI: 254780705 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.95 E-value=9.9e-26 Score=182.71 Aligned_cols=202 Identities=25% Similarity=0.273 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 02667899999999999999999999999998643730245678989988765336999999999999862666300468
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALV 281 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l~ 281 (425)
T Consensus 62 ~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~--~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~-~~~~~~-~~~~ 137 (267)
T COG1177 62 RLLSALWNSLLIALLSALLATLLGTLAALALARY--RFRGKNLLEGLILLPLVVPDIVTGIALLLLFA-ALGLPG-GFWT 137 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCC-CHHH
T ss_conf 8999999999999999999999999999999970--40268999999974241509999999999999-868875-2999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97533454366899999999851106789899870772127777883975332589999999999876779999985432
Q gi|254780705|r 282 GGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVA 361 (425)
Q Consensus 282 g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~~~ 361 (425)
T Consensus 138 ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~ 217 (267)
T COG1177 138 IVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPG 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 99999999866899999999973896799999876998888989976975279999999999999986778631132899
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1013665613445579999998603665006999999999999999999999999999741
Q gi|254780705|r 362 FVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFK 422 (425)
Q Consensus 362 ~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~ 422 (425)
T Consensus 218 ------------~~TLP~~i~s~~r~~~~P~i---~Alstll~~~~~ll~~~~~~~~~~~~ 263 (267)
T COG1177 218 ------------FTTLPLQIYSMIRRGITPEI---NALSTLLLLLSLLLILLASRLLRRRA 263 (267)
T ss_pred ------------CCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------87218999998655898199---99999999999999999999864333