HHsearch alignment for GI: 254780705 and conserved domain: COG4132
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=99.65 E-value=1.3e-13 Score=105.47 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHH-----HHHHHHH-HHHHHH-
Q ss_conf 0266789999999999999999999999999864373024567898---99887653369-----9999999-999986-
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQA---NINNLASVPSI-----VYGILGS-AVLINF- 271 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~---~i~~la~vPSI-----v~Gl~gl-~~~~~~- 271 (425)
T Consensus 53 ~~l~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAfAFiatLG~~G~vtv~Lk~~ 132 (282)
T COG4132 53 FILQAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLKTL 132 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999986799998899999999999999779478888778423145541368719999999965441699999984
Q ss_pred HCC----CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 266----6300468---975334543668999999998511067898998707721277778839753325899999999
Q gi|254780705|r 272 FKM----PRSTALV---GGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSL 344 (425)
Q Consensus 272 ~~~----~~~~~l~---g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~ 344 (425)
T Consensus 133 ~g~~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~PiL~PsllGt~vlLf 212 (282)
T COG4132 133 GGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVLLF 212 (282)
T ss_pred CCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27430046504888625257757886568999897666667899999999867742899999989985199988899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99876779999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 345 ARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 345 ~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
T Consensus 213 ANAfGA~ATayaLtgss------------lNivPI~l~AqIrGDVl~np~lg~ALa~~mi~it~v~n~~~~wlr~r-s~r 279 (282)
T COG4132 213 ANAFGAYATAYALTGSS------------LNIVPILLYAQIRGDVLHNPNLGYALAFGMIVITGVANLLYIWLRKR-SER 279 (282)
T ss_pred HHHHHHHHHHHHHCCCC------------CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 98775778787750687------------54168999999821456895189999999999999999999999987-777
Q ss_pred C
Q ss_conf 9
Q gi|254780705|r 425 W 425 (425)
Q Consensus 425 w 425 (425)
T Consensus 280 ~ 280 (282)
T COG4132 280 W 280 (282)
T ss_pred H
T ss_conf 3