HHsearch alignment for GI: 254780705 and conserved domain: COG4171
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].
Probab=98.26 E-value=0.00014 Score=48.00 Aligned_cols=147 Identities=24% Similarity=0.277 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 02667899999999999999999999999998643730245678989988765336999999999999862666300468
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALV 281 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l~ 281 (425)
T Consensus 94 Gt~~t~G~allvt~~a~l~g~~lGi~AG~------t~gl~s~~lnHilDt~lSiPsLLlAi----ivvaf~gp---sl~n 160 (296)
T COG4171 94 GTAPTVGGALLVTLAATICGGVLGIFAGA------THGLRSAVLNHILDTLLSIPSLLLAI----IVVAFAGP---SLSN 160 (296)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC---HHHH
T ss_conf 67523413999999999999999999977------77789999999999997358999999----99996083---2888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 975334543668999999998-5110678989987077212777788397533258999999999987677999998543
Q gi|254780705|r 282 GGLILALMTLPSIIIATGVAL-RTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV 360 (425)
Q Consensus 282 g~~~l~~m~lP~i~~~~~~al-~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~~ 360 (425)
T Consensus 161 amfA~~LAllPrfirsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~LG 240 (296)
T COG4171 161 AMFAVWLALLPRFIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDLG 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999988778777652676618899999725127999999999999999988886133125
Q ss_pred H
Q ss_conf 2
Q gi|254780705|r 361 A 361 (425)
Q Consensus 361 ~ 361 (425)
T Consensus 241 A 241 (296)
T COG4171 241 A 241 (296)
T ss_pred C
T ss_conf 7