HHsearch alignment for GI: 254780705 and conserved domain: COG4174
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=94.86 E-value=0.11 Score=29.55 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=89.5
Q ss_pred HHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64112202321344321101202667899999999999999999999999998643730245678989988765336999
Q gi|254780705|r 181 LFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVY 260 (425)
Q Consensus 181 i~~~fn~~f~t~~~s~~~e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~ 260 (425)
T Consensus 110 ~rfDfGeS~fr~~~VidLI~eklPVSiSlGlw~tli~YliSIPLGI~KAv~~g-----s~fDvwsS~viiigyAiP~Flf 184 (364)
T COG4174 110 ARFDFGESFFRDASVIDLIKEKLPVSISLGLWSTLIIYLISIPLGIRKAVRNG-----SRFDVWSSAVIIIGYAIPAFLF 184 (364)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCHHHHHHHHCC-----CCCEEEEEEEEEEECCCHHHHH
T ss_conf 71033387645771999999747827876899999999974333288887479-----8420221136887324279999
Q ss_pred HHHHHHHHH-----HHHCCCC---C-----HHHHHHHH--HHHHHHHHH----------HHHHH-HHHHHCHHHHHHHHH
Q ss_conf 999999999-----8626663---0-----04689753--345436689----------99999-998511067898998
Q gi|254780705|r 261 GILGSAVLI-----NFFKMPR---S-----TALVGGLI--LALMTLPSI----------IIATG-VALRTVPSSIRSAAL 314 (425)
Q Consensus 261 Gl~gl~~~~-----~~~~~~~---~-----~~l~g~~~--l~~m~lP~i----------~~~~~-~al~~vp~~~~eaa~ 314 (425)
T Consensus 185 ailLiVlFaGGsy~dwFPLRGLvSdnf~~L~~-~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTAR 263 (364)
T COG4174 185 AILLIVLFAGGSYFDWFPLRGLVSDNFDQLSW-YGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTAR 263 (364)
T ss_pred HHHHHHHHCCCCCEEECCCCCCCCCCHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHH
T ss_conf 99999741587610120014634588343472-78889999998888999998667778887530589997645266323
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 70772127777883975332589999999999
Q gi|254780705|r 315 GLGASKVQTVFHHVLPLAMPAILTGSTVSLAR 346 (425)
Q Consensus 315 ~LGas~~~~~~~v~lp~a~pgi~~g~il~~~r 346 (425)
T Consensus 264 AKGlserrvly~HVFRNAMLlviaGfP~afis 295 (364)
T COG4174 264 AKGLSERRVLYKHVFRNAMLLVIAGFPAAFIS 295 (364)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 15885545269988634278876178099999