HHsearch alignment for GI: 254780705 and conserved domain: PRK09497
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed.
Probab=99.91 E-value=1.2e-22 Score=163.11 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q ss_conf 0266789999999999999999999999999864373024567898998876533699999999999---------9862
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVL---------INFF 272 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~---------~~~~ 272 (425)
T Consensus 60 ~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~--~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l 137 (285)
T PRK09497 60 LYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLP--HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL 137 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 99999999999999999999999999888630167--5438999999999998799999999999814330788999981
Q ss_pred CCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6663------0046897533454366899999999851106789899870772127777883975332589999999999
Q gi|254780705|r 273 KMPR------STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLAR 346 (425)
Q Consensus 273 ~~~~------~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~r 346 (425)
T Consensus 138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~ 217 (285)
T PRK09497 138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP 217 (285)
T ss_pred CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH
T ss_conf 57566235423498887875313120677437878840896899999875999789132022081089999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 876779999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 347 ALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 347 a~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
T Consensus 218 s~~~F~~~~~lgG~~------------~~~l~~~i~~~~~~~~--~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk 281 (285)
T PRK09497 218 AMGMFYVSDLLGGAK------------NLLIGNVIKSQFLNIR--DWPFGAATSITLTIVMGLMLLVYYRASKLLNKK 281 (285)
T ss_pred HHHHHHEEEECCCCC------------CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 988762100104897------------5529999999998706--906999999999999999999999999995301