HHsearch alignment for GI: 254780705 and conserved domain: PRK09500
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed.
Probab=99.95 E-value=6.1e-25 Score=177.70 Aligned_cols=202 Identities=21% Similarity=0.210 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 20266789999999999999999999999999864373024567898998876533699999999999986266630046
Q gi|254780705|r 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTAL 280 (425)
Q Consensus 201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l 280 (425)
T Consensus 54 ~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~--~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~-~~~g~~~-~~~ 129 (257)
T PRK09500 54 DSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYR--FRGKKFVSGMLFVVMMSPDIVMAISLLVLF-MLLGIQL-GFW 129 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHH-HHH
T ss_conf 379999999999999999999999999999997526--774569999999999979999999999999-9735132-099
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89753345436689999999985110678989987077212777788397533258999999999987677999998543
Q gi|254780705|r 281 VGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV 360 (425)
Q Consensus 281 ~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~~ 360 (425)
T Consensus 130 ~lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~ 209 (257)
T PRK09500 130 SLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGP 209 (257)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99988888515027999999997179699999987299987963631298479999999999999999999999975289
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2101366561344557999999860366500699999999999999999999999999974
Q gi|254780705|r 361 AFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRF 421 (425)
Q Consensus 361 ~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~ 421 (425)
T Consensus 210 ~------------~~tlp~~i~~~~~~~~~~---~~~Ala~il~~i~~~~~~l~~~l~r~~ 255 (257)
T PRK09500 210 S------------YEILPLKIYSMVKVGVSP---EVNALATILLVLSLVLVILSQLLARDK 255 (257)
T ss_pred C------------CEEHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9------------602899999998737875---999999999999999999999986654