HHsearch alignment for GI: 254780705 and conserved domain: PRK10683
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional.
Probab=99.88 E-value=1.7e-20 Score=149.44 Aligned_cols=192 Identities=19% Similarity=0.160 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q ss_conf 02667899999999999999999999999998643730245678989988765336999999999999---------862
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLI---------NFF 272 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~---------~~~ 272 (425)
T Consensus 94 ~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~--~~~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~l 171 (317)
T PRK10683 94 LYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSK--PSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWL 171 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999999999999999999999999999999388--6178999999999970679999999999973143487899996
Q ss_pred CC---CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66---63---0046897533454366899999999851106789899870772127777883975332589999999999
Q gi|254780705|r 273 KM---PR---STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLAR 346 (425)
Q Consensus 273 ~~---~~---~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~r 346 (425)
T Consensus 172 Gli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~ 251 (317)
T PRK10683 172 GVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIP 251 (317)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHHH
T ss_conf 04467632256458999999999999999999999985890899999876998655400232062189999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 876779999985432101366561344557999999860366500699999999999999999
Q gi|254780705|r 347 ALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAV 409 (425)
Q Consensus 347 a~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~ 409 (425)
T Consensus 252 a~g~F~iP~lLGG~~------------~~~i~~~i~~~f~~-~~d-wp~aaAlavvLl~i~iv 300 (317)
T PRK10683 252 AVGEFVIPELLGGPD------------SIMIGRVLWQEFFN-NRD-WPVASAVAIIMLLLLIV 300 (317)
T ss_pred HHHHHHHHHHHCCCC------------CCCHHHHHHHHHHH-HCC-HHHHHHHHHHHHHHHHH
T ss_conf 988877686642998------------56299999999987-468-05899999999999999