HHsearch alignment for GI: 254780705 and conserved domain: TIGR01726
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.73 E-value=0.045 Score=31.98 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 26678999999999999999999999999986437302456789899887653369999999999998626663004689
Q gi|254780705|r 203 IGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVG 282 (425)
Q Consensus 203 i~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l~g 282 (425)
T Consensus 5 l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~--s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~y-fgLP~~Gi~l~~~~Aa 81 (99)
T TIGR01726 5 LLKGLLLTLLISVLSILLGLVLGLLLALLRL--SGNRPLRWIATVYVELFRGTPLLVQLFFIY-FGLPLIGIRLSPLTAA 81 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHH
T ss_conf 9999999999999999999999999999987--135999999999999996207999999999-8435427706778999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7533454366899
Q gi|254780705|r 283 GLILALMTLPSII 295 (425)
Q Consensus 283 ~~~l~~m~lP~i~ 295 (425)
T Consensus 82 ~~al~l~~~AY~a 94 (99)
T TIGR01726 82 VIALTLFEGAYLA 94 (99)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998799998