HHsearch alignment for GI: 254780705 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.76 E-value=3.9e-16 Score=121.60 Aligned_cols=180 Identities=27% Similarity=0.316 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999986437302456789899887653369999999999998626663004689753345436689999999
Q gi|254780705|r 221 SFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV 300 (425)
Q Consensus 221 a~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l~g~~~l~~m~lP~i~~~~~~ 300 (425)
T Consensus 1 Gv~lG~~~a~----~-~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (183)
T pfam00528 1 GIPLGIIAAL----R-RGRRLDRLLRPLIDLLQALPSFVLAILLVVISIL--SILGHGILPAIILALLGWAGYARLIRRA 73 (183)
T ss_pred CHHHHHHHHH----H-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999995----0-7858999999999999983499999999999842--3667899999999999999999999999
Q ss_pred HHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 98511067898998707721277778839753325899999999998767799999854321013665613445579999
Q gi|254780705|r 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQ 380 (425)
Q Consensus 301 al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~ 380 (425)
T Consensus 74 ~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~------~G--------lG~~ 139 (183)
T pfam00528 74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW------PG--------LGLL 139 (183)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CC--------HHHH
T ss_conf 997068999999998699843412992189899999999999999999999999999368------96--------7599
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99860366500699999999999999999999999999974104
Q gi|254780705|r 381 IYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 381 Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
T Consensus 140 ~~~---a~~~~d~~~~~~~~~~~~~~~~~~~~~~d~l~~~ldpr 180 (183)
T pfam00528 140 LIE---AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPR 180 (183)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999---99977099999999999999999999999999873910