Query gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs 239 out of 2719
Neff 6.1
Searched_HMMs 33803
Date Wed Jun 1 15:03:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780705.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3d31_C Sulfate/molybdate ABC 99.9 2.7E-25 7.9E-30 179.6 19.6 208 199-424 76-292 (295)
2 >3dhw_A D-methionine transport 99.9 2.6E-23 7.5E-28 166.9 14.5 209 198-424 4-217 (217)
3 >2r6g_G Maltose transport syst 99.9 2.7E-22 8.1E-27 160.4 15.2 160 199-360 5-167 (172)
4 >2onk_C Molybdate/tungstate AB 99.9 6.9E-22 2.1E-26 157.8 16.4 169 202-385 1-176 (181)
5 >2r6g_F Maltose transport syst 99.8 1.2E-18 3.6E-23 137.1 13.6 144 200-360 6-149 (152)
6 >2r6g_F Maltose transport syst 85.0 1.3 3.9E-05 22.3 4.1 48 368-415 61-109 (117)
7 >2r6g_G Maltose transport syst 47.2 16 0.00046 15.4 5.0 57 352-408 29-104 (124)
8 >1ztm_A Fusion glycoprotein; f 27.4 32 0.00095 13.4 5.7 98 232-332 9-128 (171)
9 >2qtl_A MSR;, methionine synth 23.1 39 0.0011 12.9 3.0 38 91-128 6-43 (44)
10 >1s4n_A Glycolipid 2-alpha-man 18.3 46 0.0013 12.4 1.0 65 118-182 193-261 (348)
No 1
>>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:)
Probab=99.94 E-value=2.7e-25 Score=179.57 Aligned_cols=208 Identities=20% Similarity=0.194 Sum_probs=177.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 0120266789999999999999999999999999864373024567898998876533699999999999986266----
Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM---- 274 (425)
Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~---- 274 (425)
...+.+.++.+|++.++++++++.++|+++|++++++ +.+.++.++..+.....+|.++.++..+..+......
T Consensus 76 ~~~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (295)
T 3d31_C 76 GNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPL 153 (295)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 5989999999999999999999999999999999963--66479999999999999999999999999997266324303
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----630046897533454366899999999851106789899870772127777883975332589999999999876
Q gi|254780705|r 275 -----PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALG 349 (425)
Q Consensus 275 -----~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~G 349 (425)
...+.....+++.++.+|+++...+++++++|++++|||..+|||+||++++|++|+++|++++|.++++..+++
T Consensus 154 ~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~ 233 (295)
T 3d31_C 154 ESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAIS 233 (295)
T ss_dssp TTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32167123999999999999999999999999975050589999876998262127746996999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 779999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 350 ETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 350 Eta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
|+....++++. ..++++.+|....+.+.+. +++.+++++++++.++.+...+.+|.++|
T Consensus 234 ~~~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~~---~~a~~~i~~~~~~~~~~~~~~~~~r~~~~ 292 (295)
T 3d31_C 234 EFGAVVILAYY-------------PMVGPTLIYDRFISYGLSA---SRPIAVLLILVTLSIFLVIRTLSAGWSIY 292 (295)
T ss_dssp CCHHHHHHHCT-------------TCCHHHHHHHHHHHSTTTT---THHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHCC-------------CCHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999589-------------7319999999999448999---99999999999999999999999760364
No 2
>>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:)
Probab=99.91 E-value=2.6e-23 Score=166.95 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=165.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10120266789999999999999999999999999864373-----0245678989988765336999999999999862
Q gi|254780705|r 198 PEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK-----GFFSSFVQANINNLASVPSIVYGILGSAVLINFF 272 (425)
Q Consensus 198 ~e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~-----~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~ 272 (425)
|-..-++.++..|+..+++++++++.+|+..|+.+..+..+ .++..........+.++|.+++..+.........
T Consensus 4 ~~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 3dhw_A 4 PMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 83 (217)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999999999999999999999998734432018999999999999999999999999998645520
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66630046897533454366899999999851106789899870772127777883975332589999999999876779
Q gi|254780705|r 273 KMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352 (425)
Q Consensus 273 ~~~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta 352 (425)
+. ..+.....+++++...|++....+++++++|+++.|||.++|+|+||+++||++|.++|++++|.+++++++++|++
T Consensus 84 ~~-~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v~lP~~~p~i~~~~~~~~~~~~~~~~ 162 (217)
T 3dhw_A 84 GT-SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSA 162 (217)
T ss_dssp CC-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45-30188998988997246898999988886150277888606987421426730997699999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 353 PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 353 ~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
...++|+.. ......+... .+.+ ....++.+++++++.++++.+...+++|++||
T Consensus 163 ~~~~ig~~~------------~~~~~~~~~~--~~~~---~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~rR 217 (217)
T 3dhw_A 163 MGGAVGAGG------------LGQIGYQYGY--IGYN---ATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217)
T ss_dssp HCCSTTCCH------------HHHHHHHHHH--SSCC---TTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHH------------HHHHHHHHHH--HHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999998759------------9999999999--7501---89999999999999999999999999985699
No 3
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244)
Probab=99.90 E-value=2.7e-22 Score=160.39 Aligned_cols=160 Identities=14% Similarity=0.019 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCC
Q ss_conf 0120266789999999999999999999999999864373024567898998876533699999999999986---2666
Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINF---FKMP 275 (425)
Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~---~~~~ 275 (425)
+..+++.++..|+..++++.++++++|+.+|++++++ +.+.++.++........+|.++.++..+.++... ....
T Consensus 5 ~~~~~~~~l~~Sl~~a~~~~~i~~~ig~~~a~~~~~~--~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2r6g_G 5 PPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM--RFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFI 82 (172)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCHHHEEEHHEECCCCCCCCCCC
T ss_conf 6527999986489999999999986310333333204--41478899987623321331120110310024456512222
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30046897533454366899999999851106789899870772127777883975332589999999999876779999
Q gi|254780705|r 276 RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLL 355 (425)
Q Consensus 276 ~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll 355 (425)
..+.+.+.++..++.+|++++..+.+++++|++++|||..+|||+||+++||++|.++|+++++.++++.+++||+...+
T Consensus 83 ~~~~~~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~f~~V~lP~~~p~i~~~~~l~f~~~~~~~~~~~ 162 (172)
T 2r6g_G 83 GLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVAS 162 (172)
T ss_dssp STTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCE
T ss_conf 46750000000355115421100036413305655567754940777788888987654677788776443232300340
Q ss_pred HHHHH
Q ss_conf 98543
Q gi|254780705|r 356 FVGMV 360 (425)
Q Consensus 356 ~~~~~ 360 (425)
+.++.
T Consensus 163 ~l~~~ 167 (172)
T 2r6g_G 163 LLLRD 167 (172)
T ss_dssp HHCCS
T ss_pred ECCCC
T ss_conf 11489
No 4
>>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249)
Probab=99.89 E-value=6.9e-22 Score=157.81 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
Q ss_conf 0266789999999999999999999999999864373024567898998876533699999999999986266-------
Q gi|254780705|r 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM------- 274 (425)
Q Consensus 202 Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~------- 274 (425)
|+|.++.+|++.++++.++++++|+..|+++.+. +.+.+++++........+|++++|+..+.++......
T Consensus 1 ~~~~~l~~Tl~~a~~~~~i~~~ig~~~a~~~~~~--~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (181)
T 2onk_C 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK--SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLK 78 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 8999999999999999999999999999988641--56315899999987412101222333100235532222212345
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63004689753345436689999999985110678989987077212777788397533258999999999987677999
Q gi|254780705|r 275 PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPL 354 (425)
Q Consensus 275 ~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~l 354 (425)
...+.....+++.++.+|+.+...+++++++|+++.|||..+|||+||+++||++|.++|+++++.++++.++++|+.+.
T Consensus 79 ~~~~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~q~~~~I~lP~~~p~i~~~~~l~~~~~~~~~~~~ 158 (181)
T 2onk_C 79 FVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAV 158 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 44433202210113333331222000022354245645432699843400634486627632675188887699998888
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9985432101366561344557999999860
Q gi|254780705|r 355 LFVGMVAFVTDYPVGVTDIATAFPVQIYLWA 385 (425)
Q Consensus 355 l~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~ 385 (425)
.++++. ..++++++|...
T Consensus 159 ~~~~~~-------------~~~~~~~~~~~~ 176 (181)
T 2onk_C 159 VVIAYY-------------PMIAPTLIYERY 176 (181)
T ss_dssp HTTCCS-------------SCCHHHHHHHHH
T ss_pred HHHCCC-------------CCHHHHHHHHHH
T ss_conf 743289-------------850999999999
No 5
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453)
Probab=99.80 E-value=1.2e-18 Score=137.15 Aligned_cols=144 Identities=14% Similarity=0.043 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999999998626663004
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTA 279 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~ 279 (425)
+...+.++.+|+.+++.+.+++..+|+..|..++.+ +-+-+++++......-++|.++.|+. .
T Consensus 6 ~~~~~~~~~~tl~~a~~~~~~~~~~g~~~a~l~~r~--~f~gr~~l~~~~~lp~~~p~~v~~~~---------------~ 68 (152)
T 2r6g_F 6 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE--ALRGKAVYRVLLILPYAAWFSDPTTA---------------R 68 (152)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SSTTHHHHHHHTTHHHHCTTTSHHHH---------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCHHCCCHHH---------------H
T ss_conf 789999999999999999999999999999998742--24621141353238888020482132---------------2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68975334543668999999998511067898998707721277778839753325899999999998767799999854
Q gi|254780705|r 280 LVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGM 359 (425)
Q Consensus 280 l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~ 359 (425)
....++..+..+|+.++..+++++++|++++|||..+|+|+||+++||++|.++|+++++.++.+..+++|.....++++
T Consensus 69 ~~li~a~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~~~p~il~~~~l~f~~~~~e~~~~~~l~g 148 (152)
T 2r6g_F 69 TMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTN 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHHHHTCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 22333455553224455444320244278999999749994011314631647899999999999999998789999947
Q ss_pred H
Q ss_conf 3
Q gi|254780705|r 360 V 360 (425)
Q Consensus 360 ~ 360 (425)
+
T Consensus 149 g 149 (152)
T 2r6g_F 149 G 149 (152)
T ss_dssp S
T ss_pred C
T ss_conf 9
No 6
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:64-99,F:249-268,F:454-514)
Probab=84.96 E-value=1.3 Score=22.25 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5613445579999998603665-00699999999999999999999999
Q gi|254780705|r 368 VGVTDIATAFPVQIYLWAADAE-RPFVERTFGAILLLLIFLAVINTAML 415 (425)
Q Consensus 368 ~~~~~p~~tlp~~Iy~~~~~~~-~~~~~~~~aa~lvLl~~~~~~n~~a~ 415 (425)
++|.+.+++++..+|..+-+.. ....-.++|.+++|+++++++...-.
T Consensus 61 GGP~~aT~tl~~yiY~~aF~~~~~~~~G~aSAiavILflIi~iv~~i~~ 109 (117)
T 2r6g_F 61 TTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNL 109 (117)
T ss_dssp SSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6664058799999999998514445689999999999999999999999
No 7
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:1-72,G:245-296)
Probab=47.20 E-value=16 Score=15.40 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCC-------CCCCCCC------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999854321013-------6656134------------455799999986036650069999999999999999
Q gi|254780705|r 352 APLLFVGMVAFVTD-------YPVGVTD------------IATAFPVQIYLWAADAERPFVERTFGAILLLLIFLA 408 (425)
Q Consensus 352 a~ll~~~~~~~~~~-------~p~~~~~------------p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~ 408 (425)
=|++++-+..|.++ +|++++- ....+|+.++.+.++-...+...++++.+..+-+++
T Consensus 29 ~Pl~wvv~~S~~~g~~~~~sliP~~~tl~hy~~ll~~~~~~~~~L~vgL~~f~~~~~~~w~~~~AaavL~~iPiii 104 (124)
T 2r6g_G 29 FPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVEQADGLAVGMQQYLNPQNYLWGDFAAAAVMSALPITI 104 (124)
T ss_dssp HHHHHHHHHHHBSSCCSSCCSSCSSBCCHHHHHHSSCCC-----HHHHGGGGBCSSCBCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999998399777367778887560444313566312003399999999822154099999999999999999
No 8
>>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral protein; HET: NAG; 3.05A {Human parainfluenza virus 3} (A:42-212)
Probab=27.41 E-value=32 Score=13.39 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=61.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHCCCCCHHHHHHHHHH--------HH
Q ss_conf 986437302456789899887653369999--------------99999999862666300468975334--------54
Q gi|254780705|r 232 LEEFSHKGFFSSFVQANINNLASVPSIVYG--------------ILGSAVLINFFKMPRSTALVGGLILA--------LM 289 (425)
Q Consensus 232 l~e~a~~~~~~~~i~~~i~~la~vPSIv~G--------------l~gl~~~~~~~~~~~~~~l~g~~~l~--------~m 289 (425)
+++| ++.+++++...=|.+..+-+.+-+ ++|..+-..-+|.....-+.+|++|. +.
T Consensus 9 l~~Y--n~tl~~LL~Pl~~~l~~i~~~vt~~~~~~~~~~~r~kRF~Gavig~~ALGVATAAQITA~vAL~qa~~na~~I~ 86 (171)
T 1ztm_A 9 IKQY--KRLLDRLIIPLYDGLRLQKDVIVSNQESNENTDPSTKRFFGGVIGTIALGVATSAQITAAVALVEAKQARSDIE 86 (171)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------CHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999--98898877558999987642100157777889855324204455677876777999999999999988599999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 3668999999998511067898998707721277778839753
Q gi|254780705|r 290 TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLA 332 (425)
Q Consensus 290 ~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a 332 (425)
-|---+..+-++...+....++-+.+++.-+-+. -+.+.|..
T Consensus 87 ~lK~si~~TNeAV~el~~g~~~la~Av~~lQd~I-N~~l~pai 128 (171)
T 1ztm_A 87 KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYV-NKEIVPSI 128 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 9999999988999999863443478999899999-87766667
No 9
>>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel beta barrel, flexible hinge region; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* (A:218-261)
Probab=23.07 E-value=39 Score=12.88 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99996314566660348989987300168999999740
Q gi|254780705|r 91 KALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMT 128 (425)
Q Consensus 91 ~aL~~~~p~~~~~r~~kr~l~~liS~~a~~~Lrd~v~~ 128 (425)
+++.+.+.+..+|.++|+.|..|-|.....+..+++.+
T Consensus 6 K~~L~~LAeyasD~~Ek~~L~~L~S~eG~~ey~~~i~e 43 (44)
T 2qtl_A 6 KAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRD 43 (44)
T ss_dssp HHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999876999999999986062006899987650
No 10
>>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} (A:)
Probab=18.26 E-value=46 Score=12.43 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCHHHCCCEEEEEEEECCCCHHHHCCCCCC----CCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6899999974063215974789997045302330345565----3000059999999999998745664
Q gi|254780705|r 118 ARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYS----PANVHRMSDYQWKWFQKLDSDGALF 182 (425)
Q Consensus 118 a~~~Lrd~v~~np~liG~t~~~~llAsddvD~~~KG~i~r----~e~~rrisd~ql~~~d~L~~~g~i~ 182 (425)
-..+.++++.+||+.+.+.-...++.+++.+.|.-=++-. ..-+---|+...+++|.|++.|-.-
T Consensus 193 Lw~~~~~F~~~~p~~~~~~n~~~fl~d~~~~~yn~ChfwsNFEIa~l~FfRs~~Y~~~F~~LD~~GGFy 261 (348)
T 1s4n_A 193 LWQTSMDFIKKNPEYLDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWRSPAYREYFDTLDHQGGFF 261 (348)
T ss_dssp HHHHHHHHHHHCGGGSCTTCCHHHHCSSTTSSCCCEEECTTSEEEEHHHHTSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEE
T ss_conf 899999999858110584244542026887620245330684786006864879999999998759987
Done!