Query gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 425 No_of_seqs 239 out of 2719 Neff 6.1 Searched_HMMs 23785 Date Tue May 31 16:56:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780705.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2onk_C Molybdate/tungstate ABC 99.9 1.1E-24 4.5E-29 174.8 18.3 207 200-424 67-280 (284) 2 3d31_C Sulfate/molybdate ABC t 99.9 3E-24 1.3E-28 171.9 19.8 205 200-422 77-290 (295) 3 3dhw_A D-methionine transport 99.9 2E-23 8.3E-28 166.7 15.2 210 197-424 3-217 (217) 4 2r6g_F Maltose transport syste 99.9 2.3E-22 9.5E-27 159.9 19.3 211 201-414 275-505 (514) 5 2r6g_G Maltose transport syste 99.9 1.2E-20 4.9E-25 149.0 16.0 207 199-423 77-287 (296) 6 2j8s_A ACRB, acriflavine resis 33.1 18 0.00076 14.0 14.6 19 46-64 562-580 (1055) 7 2iub_A CORA, divalent cation t 14.2 41 0.0017 11.8 0.7 19 53-72 38-56 (363) 8 2vv5_A MSCS, small-conductance 12.0 50 0.0021 11.2 8.2 17 264-280 81-97 (286) 9 2l34_A TYRO protein tyrosine k 11.9 50 0.0021 11.2 1.5 10 334-343 6-15 (33) 10 2kog_A Vesicle-associated memb 10.1 58 0.0024 10.8 4.8 39 2-41 78-116 (119) No 1 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Probab=99.93 E-value=1.1e-24 Score=174.76 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=167.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---- Q ss_conf 1202667899999999999999999999999998643730245678989988765336999999999999862666---- Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP---- 275 (425) Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~---- 275 (425) ..+.+.++.+|+..+++++++++++|+..|+++.++ +.+.+++++..+.....+|++++++..+.++.+..... T Consensus 67 ~~~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~--~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~~~~~~ 144 (284) T 2onk_C 67 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK--SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP 144 (284) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 979999999999999999999999999999999982--644899999999978744514456666553312255676210 Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---30046897533454366899999999851106789899870772127777883975332589999999999876779 Q gi|254780705|r 276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352 (425) Q Consensus 276 ---~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta 352 (425) ..+.....++.....+|+++...+++++++|+++.|||..+|+++||++++|++|.++|+++++.+++++++++|++ T Consensus 145 ~~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~~~~~~~~ 224 (284) T 2onk_C 145 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG 224 (284) T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00321069999998861465022234355315885689999975989353011024999999999999999999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999985432101366561344557999999860366500699999999999999999999999999974104 Q gi|254780705|r 353 PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425) Q Consensus 353 ~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425) ...++++. ..++|..+|....+.+. +.+.+.+++++++.+.++.+..++++|-+.| T Consensus 225 ~~~~l~~~-------------~~~~~~~i~~~~~~~~~---~~~~a~a~il~~i~l~~~~~~~~l~~r~~~~ 280 (284) T 2onk_C 225 AVVVIAYY-------------PMIAPTLIYERYLSEGL---SAAMPVAAILILLSLAVFVALRIIVGREDVS 280 (284) T ss_dssp HHHTTCCS-------------SCCHHHHHHHHHHHHCG---GGTHHHHHHHHHHHHHHHHHHHHTTC----- T ss_pred HHHHHHCC-------------CCHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988289-------------85299999999980589---9999999999999999999999999713774 No 2 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Probab=99.93 E-value=3e-24 Score=171.91 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=163.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------- Q ss_conf 1202667899999999999999999999999998643730245678989988765336999999999999862------- Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFF------- 272 (425) Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~------- 272 (425) ..+++.++..|+..++++.++++.+|+..|++++++ +.+.++.++..+.....+|+++.++..+.++.+.. T Consensus 77 ~~~~~~~i~~Tl~~a~~s~~i~~ilg~~~a~~l~~~--~~~~~~~~~~l~~~p~~~p~~v~~~~~~~~~~~~g~~~~~~~ 154 (295) T 3d31_C 77 NRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLE 154 (295) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 989999999999999999999999999999999964--543589999999999999988899999998612465332101 Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --666300468975334543668999999998511067898998707721277778839753325899999999998767 Q gi|254780705|r 273 --KMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350 (425) Q Consensus 273 --~~~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GE 350 (425) .....+.....++..++.+|+++...+++++++|++++|||..+||++||++++|++|.++|+++++.+++++++++| T Consensus 155 ~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~IiLP~~~p~i~~~~~l~f~~~~~~ 234 (295) T 3d31_C 155 SYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISE 234 (295) T ss_dssp TTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 02671257899999999980744320157888731526999999849993663235339989999999999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 799999854321013665613445579999998603665006999999999999999999999999999741 Q gi|254780705|r 351 TAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFK 422 (425) Q Consensus 351 ta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~ 422 (425) ++..+++|+. ..+++..+|....+.+.+ .+++.+++++++++.+..+...+.+|.. T Consensus 235 f~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~---~a~a~a~il~ii~l~i~~~~~~L~~~~~ 290 (295) T 3d31_C 235 FGAVVILAYY-------------PMVGPTLIYDRFISYGLS---ASRPIAVLLILVTLSIFLVIRTLSAGWS 290 (295) T ss_dssp CHHHHHHHCT-------------TCCHHHHHHHHHHHSTTT---TTHHHHHHHHHHHHHHHHHHC------- T ss_pred HHHHHHHHCC-------------CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCH T ss_conf 9999988489-------------734999999999934899---9999999999999999999999997450 No 3 >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Probab=99.91 E-value=2e-23 Score=166.68 Aligned_cols=210 Identities=19% Similarity=0.174 Sum_probs=163.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11012026678999999999999999999999999986437-----3024567898998876533699999999999986 Q gi|254780705|r 197 RPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSH-----KGFFSSFVQANINNLASVPSIVYGILGSAVLINF 271 (425) Q Consensus 197 ~~e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~-----~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~ 271 (425) +|....++.++..|+..++++.+++..+|+..|+++..+.+ ..++.+++...++.+.++|.+++.+++..++... T Consensus 3 ~~~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 82 (217) T 3dhw_A 3 EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI 82 (217) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78999999999999999999999999999999999999864443200899999999999999999999999999999999 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 26663004689753345436689999999985110678989987077212777788397533258999999999987677 Q gi|254780705|r 272 FKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351 (425) Q Consensus 272 ~~~~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEt 351 (425) ++. ..+...+.+++++...|++....+++++++|++++|||.++|+|+||+++||++|.++|++++|..+++..+++|+ T Consensus 83 ~~~-~~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~~~~~~~i~~~ 161 (217) T 3dhw_A 83 VGT-SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYS 161 (217) T ss_dssp TCC-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 861-2369999999999867999999999998589899999871898989996974199789999999999999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999985432101366561344557999999860366500699999999999999999999999999974104 Q gi|254780705|r 352 APLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425) Q Consensus 352 a~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425) ....++|+.. +....+.......+. +...+..+.+.++++.++....+++||++|| T Consensus 162 ~i~~~ig~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~rR 217 (217) T 3dhw_A 162 AMGGAVGAGG---------------LGQIGYQYGYIGYNA--TVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217) T ss_dssp HHCCSTTCCH---------------HHHHHHHHHHSSCCT--THHHHHHHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHH---------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999998879---------------999999999986008--9999999999999999999999999975699 No 4 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Probab=99.91 E-value=2.3e-22 Score=159.94 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=150.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------- Q ss_conf 202667899999999999999999999999998643730245678989988765336999999999999862-------- Q gi|254780705|r 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFF-------- 272 (425) Q Consensus 201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~-------- 272 (425) ..++..+.-|+..+++++++++++|+..|..+... +.|.+++.+..+-....+|+++.++.....+.+.+ T Consensus 275 ~~~~~sl~~t~~~a~~s~~l~~~~gl~la~~~~~~--~~r~~~~~~~l~~lP~~iP~iv~~l~~~~lf~~~~G~i~~~l~ 352 (514) T 2r6g_F 275 KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE--ALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLS 352 (514) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 89999999999998788999999999999998641--2351113025126999999999999999987124423555666 Q ss_pred ---CCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---666-------3004689753345436689999999985110678989987077212777788397533258999999 Q gi|254780705|r 273 ---KMP-------RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTV 342 (425) Q Consensus 273 ---~~~-------~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il 342 (425) |.. ..+...-.++...+.+|+++...+.+++++|++++|||..+|||+||+++||++|+++|+++++.++ T Consensus 353 ~l~g~~~~~l~~~~~~~~~vil~~~~~~~P~~~~i~~~al~sIp~~l~EAA~idGAs~~q~f~~I~lPll~p~i~~~~il 432 (514) T 2r6g_F 353 ALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIA 432 (514) T ss_dssp HTSSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHH T ss_pred HCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHEEEHHHHHHHHHHHHHH T ss_conf 40488850313768779999999998888787776554431698589999997598862230113036469999999999 Q ss_pred HHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999876779-9999854321013665613445579999998603665-0069999999999999999999999 Q gi|254780705|r 343 SLARALGETA-PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAE-RPFVERTFGAILLLLIFLAVINTAM 414 (425) Q Consensus 343 ~~~ra~GEta-~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~-~~~~~~~~aa~lvLl~~~~~~n~~a 414 (425) ++..+++|.. |.++++|.. .......+...+.+++..+|..+.++. ......++|.+++++++++.+.++. T Consensus 433 ~f~~~~~~F~~~~lLt~Ggp-~~~~~~~~~~~t~~l~~~~y~~af~~~~~~~~g~AaAiavil~liv~~l~~i~ 505 (514) T 2r6g_F 433 SFAFNFNNFVLIQLLTNGGP-DRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVN 505 (514) T ss_dssp HHHHHHTCHHHHHHHCSSCS-BCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998889999947998-75555565406889999999999851545678999999999999999999999 No 5 >2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G Probab=99.86 E-value=1.2e-20 Score=149.02 Aligned_cols=207 Identities=14% Similarity=0.054 Sum_probs=146.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCC Q ss_conf 0120266789999999999999999999999999864373024567898998876533699999999999986--2-666 Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINF--F-KMP 275 (425) Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~--~-~~~ 275 (425) .....+.++.+|+..+.++.++++++|+.+|..+..+ +.+..+.....+.....+|+++.++.....+... . ... T Consensus 77 ~~~~~~~~l~nSl~~a~~~~~~~~~i~~~~a~~l~r~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~ 154 (296) T 2r6g_G 77 PPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM--RFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFI 154 (296) T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 4408999999999999999999999999999999834--78517999999986224767798999999998614213443 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH Q ss_conf 30046897533454366899999999851106789899870772127777883975332589999999999876779-99 Q gi|254780705|r 276 RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA-PL 354 (425) Q Consensus 276 ~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta-~l 354 (425) ..+...+.+......+|+.++....+++++|++++|||..+||++||+++||++|..+|+++++.++++..+++|.. |. T Consensus 155 ~~~~~~~vi~~~~~~~pf~~~~~~~~l~~ip~~l~EAA~~dGAs~~~~f~~I~lPll~p~i~~~~~l~fi~~~~~f~~~~ 234 (296) T 2r6g_G 155 GLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVAS 234 (296) T ss_dssp STTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 02336999999999999899999999973407778889875993033243899847568999999999999999768888 Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 998543210136656134455799999986036650069999999999999999999999999997410 Q gi|254780705|r 355 LFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKK 423 (425) Q Consensus 355 l~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~ 423 (425) ++.++. ...|+++.+|.+.+... .....++|++++.++.++ ++..+++||+-| T Consensus 235 ~~~~~~------------~~~t~~~~i~~~~~~~~-~~~~~~~A~~vi~~l~~l---iv~~~~qr~~~~ 287 (296) T 2r6g_G 235 LLLRDV------------NSYTLAVGMQQYLNPQN-YLWGDFAAAAVMSALPIT---IVFLLAQRWLVN 287 (296) T ss_dssp HHCCSG------------GGCCHHHHGGGGBCSSC-BCHHHHHHHHHHTHHHHH---HHHHHHTTTCCS T ss_pred HCCCCC------------CCEEHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH T ss_conf 135899------------80639999999983306-219999999999999999---999999999998 No 6 >2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... Probab=33.07 E-value=18 Score=14.00 Aligned_cols=19 Identities=5% Similarity=-0.163 Sum_probs=11.1 Q ss_pred CCCCCEEEEEEEEEEEECH Q ss_conf 4446216899999873088 Q gi|254780705|r 46 KGIGALWQTHISLPIEFSE 64 (425) Q Consensus 46 ~G~~AF~qT~I~l~V~~d~ 64 (425) +=.|...+..+.+.+++++ T Consensus 562 ~ffP~~d~~~~~v~v~~p~ 580 (1055) T 2j8s_A 562 SFLPDEDQGVFMTMVQLPA 580 (1055) T ss_dssp CSSCCCCCSEEEEEEECCT T ss_pred CCCCCCCCEEEEEEEECCC T ss_conf 4288756405899998689 No 7 >2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Probab=14.20 E-value=41 Score=11.76 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=7.9 Q ss_pred EEEEEEEEEECHHHHCCCCC Q ss_conf 89999987308889065765 Q gi|254780705|r 53 QTHISLPIEFSETIVDPQKK 72 (425) Q Consensus 53 qT~I~l~V~~d~~~id~~~~ 72 (425) .+.|.+ ++++++..+.... T Consensus 38 ~~~i~~-~~y~~~~~~~~~~ 56 (363) T 2iub_A 38 DFEIEV-MNYSIEEFREFKT 56 (363) T ss_dssp CCEEEE-EEECSSCEEEEEE T ss_pred CCEEEE-EEECCCCEEEECC T ss_conf 856999-9965561046247 No 8 >2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Probab=11.98 E-value=50 Score=11.18 Aligned_cols=17 Identities=0% Similarity=0.014 Sum_probs=7.3 Q ss_pred HHHHHHHHHCCCCCHHH Q ss_conf 99999986266630046 Q gi|254780705|r 264 GSAVLINFFKMPRSTAL 280 (425) Q Consensus 264 gl~~~~~~~~~~~~~~l 280 (425) ++.+.+..+|....+.+ T Consensus 81 ~~~i~L~~lG~~~~~ll 97 (286) T 2vv5_A 81 TLIAALGRVGVQTASVI 97 (286) T ss_dssp HHHHHHHTTTCCSTTHH T ss_pred HHHHHHHHHCCCHHHHH T ss_conf 99999999488758999 No 9 >2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B Probab=11.95 E-value=50 Score=11.18 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=0.0 Q ss_pred HHHHHHHHHH Q ss_conf 2589999999 Q gi|254780705|r 334 PAILTGSTVS 343 (425) Q Consensus 334 pgi~~g~il~ 343 (425) ||+++|+++| T Consensus 6 pgvlagivlg 15 (33) T 2l34_A 6 PGVLAGIVVG 15 (33) T ss_dssp THHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 4355567888 No 10 >2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Probab=10.13 E-value=58 Score=10.79 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8558899888888865689999999999999999999999 Q gi|254780705|r 2 KSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLS 41 (425) Q Consensus 2 ~~~~~~~~~LkkR~~aEkrFr~yGi~AI~ial~fL~~Ll~ 41 (425) +.+...-+.|+++. -=+.+|+|-+.++++++++++++++ T Consensus 78 ~~F~k~A~kL~r~m-wwrn~K~~ii~~~v~~i~i~iii~~ 116 (119) T 2kog_A 78 SQFETSAAKLKRKY-WWKNLKMMIILGVICAIILIIIIVY 116 (119) T ss_dssp HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999-9999999999999999999999888 Done!