HHSEARCH alignment of GI: 254780705 and SCOP domain: d2r6gf2

Alignment
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.88  E-value=7e-21  Score=148.91  Aligned_cols=210  Identities=13%  Similarity=0.088  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Q ss_conf             12026678999999999999999999999999986437302456789899887653369999999999998626------
Q gi|254780705|r  200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFK------  273 (425)
Q Consensus       200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~------  273 (425)
                      ....+.++..|+..+.+++++++++|...|..++.+  +.|.+++.+..+-....+|+++.|+....++.+..|      
T Consensus        14 ~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~--~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l   91 (244)
T d2r6gf2          14 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE--ALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMML   91 (244)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             999999999999999999999999999999999847--420478999999999984088999999998752355146666


Q ss_pred             -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----6-------6300468975334543668999999998511067898998707721277778839753325899999
Q gi|254780705|r  274 -----M-------PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGST  341 (425)
Q Consensus       274 -----~-------~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~i  341 (425)
                           .       +..+...-.++.....+|+.+...+++++++|+++.|||.-+||++||+++||++|+.+|+++++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~i  171 (244)
T d2r6gf2          92 SALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMI  171 (244)
T ss_dssp             HHTSSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             55302677410127799999999999971027799999999759999989999749976577499985446899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999876779999985432101366561344557999999860366-50069999999999999999999
Q gi|254780705|r  342 VSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADA-ERPFVERTFGAILLLLIFLAVIN  411 (425)
Q Consensus       342 l~~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~-~~~~~~~~~aa~lvLl~~~~~~n  411 (425)
                      +.+..+++|.....+.++.+.....-..+...+.+++.++|....+. .......++|.+.+++++++++.
T Consensus       172 l~fi~~~~~f~~~~~l~~ggp~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~aaA~avil~viv~~l~  242 (244)
T d2r6gf2         172 ASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALA  242 (244)
T ss_dssp             HHHHHHHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999720056764425888875556663049999999999999862532529999999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Maltose transport system permease protein MalF
species: Escherichia coli [TaxId: 562]