HHSEARCH alignment of GI: 254780705 and SCOP domain: d3dhwa1

Alignment
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=5.5e-21  Score=149.57  Aligned_cols=191  Identities=20%  Similarity=0.188  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             667899999999999999999999999998643-----730245678989988765336999999999999862666300
Q gi|254780705|r  204 GVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS-----HKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRST  278 (425)
Q Consensus       204 ~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a-----~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~  278 (425)
                      +.++..|+.++++++++++.+|+..|+++..+.     ...++.+.+......+.++|.++...+....+...++... +
T Consensus         5 l~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~-~   83 (203)
T d3dhwa1           5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI-G   83 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSS-S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C
T ss_conf             999999999999999999999999999999987444320089999999999999999999999999986355404541-1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46897533454366899999999851106789899870772127777883975332589999999999876779999985
Q gi|254780705|r  279 ALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG  358 (425)
Q Consensus       279 ~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~  358 (425)
                      ..++.+++.+...|++++..+++++++|++++|||..+|+|+||+++||++|.++|++++|.++.+.++++|++...++|
T Consensus        84 ~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig  163 (203)
T d3dhwa1          84 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998648999999988884362068999886994442418840997699999999999999999999999997


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             432101366561344557999999860366500699999999999999999999
Q gi|254780705|r  359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINT  412 (425)
Q Consensus       359 ~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~  412 (425)
                      +.               .+...++.........  +..++..+++++++..++.
T Consensus       164 ~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~v~li~~  200 (203)
T d3dhwa1         164 AG---------------GLGQIGYQYGYIGYNA--TVMNTVLVLLVILVYLIQF  200 (203)
T ss_dssp             CC---------------HHHHHHHHHHHSSCCT--THHHHHHHHHHHHHHHHHH
T ss_pred             HH---------------HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHH
T ss_conf             75---------------9999999999874028--9999999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]