Query gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs 239 out of 2719
Neff 6.1
Searched_HMMs 13730
Date Wed Jun 1 08:36:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780705.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d31c1 f.58.1.1 (C:13-260) Su 99.9 1.1E-23 8.2E-28 166.7 20.2 194 201-412 43-245 (248)
2 d2r6gg1 f.58.1.1 (G:7-296) Mal 99.9 2.1E-22 1.5E-26 158.7 18.6 207 199-423 71-281 (290)
3 d2onkc1 f.58.1.1 (C:1-252) Mol 99.9 5.9E-22 4.3E-26 155.8 18.9 199 200-416 44-249 (252)
4 d2r6gf2 f.58.1.1 (F:261-504) M 99.9 7E-21 5.1E-25 148.9 18.7 210 200-411 14-242 (244)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 99.9 5.5E-21 4E-25 149.6 16.4 191 204-412 5-200 (203)
6 d1jhfa1 a.4.5.2 (A:2-72) LexA 19.2 19 0.0014 12.4 2.6 34 303-336 21-54 (71)
7 d2dt5a2 c.2.1.12 (A:78-203) Tr 8.3 17 0.0013 12.6 -1.7 71 109-182 17-89 (126)
8 d1q90n_ f.23.27.1 (N:) PetN su 7.6 42 0.0031 10.1 3.4 21 390-410 3-23 (31)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 46 0.0034 9.9 3.5 20 211-230 7-26 (32)
10 d2axti1 f.23.37.1 (I:1-35) Pho 6.1 55 0.004 9.4 0.2 14 185-198 19-32 (35)
No 1
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=99.92 E-value=1.1e-23 Score=166.71 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf 20266789999999999999999999999999864373024567898998876533699999999999986266------
Q gi|254780705|r 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM------ 274 (425)
Q Consensus 201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~------ 274 (425)
...+.++..|++.+.++.++++++|+..|++++++ +.+.++.++........+|++++|+..+..+.+....
T Consensus 43 ~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~--~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~~ 120 (248)
T d3d31c1 43 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLES 120 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999999999999999999999999999864--6512568999999999999720002445203432111112222
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---63004689753345436689999999985110678989987077212777788397533258999999999987677
Q gi|254780705|r 275 ---PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351 (425)
Q Consensus 275 ---~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEt 351 (425)
...+.....++...+.+|++++..+++++++|++++|||..+|+|+||+++||++|.++|+++++.++++.++++|.
T Consensus 121 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~~ 200 (248)
T d3d31c1 121 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF 200 (248)
T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11245642001001101100368888899997103368999876310423477898899999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985432101366561344557999999860366500699999999999999999999
Q gi|254780705|r 352 APLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINT 412 (425)
Q Consensus 352 a~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~ 412 (425)
.+..++|+. ..+++..+|....+.+.+ .+.+.+++++++.+.+..
T Consensus 201 ~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~---~a~a~a~il~~~~l~~~~ 245 (248)
T d3d31c1 201 GAVVILAYY-------------PMVGPTLIYDRFISYGLS---ASRPIAVLLILVTLSIFL 245 (248)
T ss_dssp HHHHHHHCT-------------TCCHHHHHHHHHHHSTTT---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-------------CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf 988733189-------------840999999999955899---999999999999999999
No 2
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=2.1e-22 Score=158.68 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC
Q ss_conf 01202667899999999999999999999999998643730245678989988765336999999999999862---666
Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFF---KMP 275 (425)
Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~---~~~ 275 (425)
...+.+.++.+|+..+.+++++++++|+.+|..+..+ +.+.++.+...+.....+|+++.++.....+.+.. ...
T Consensus 71 ~~~~~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~--~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~~~~ 148 (290)
T d2r6gg1 71 PPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM--RFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFI 148 (290)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCHHHEEEHHHCCCCCCCCCCCC
T ss_conf 5317999987667766545556656777788888874--41357899987641311231230100220113347756621
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 30046897533454366899999999851106789899870772127777883975332589999999999876779-99
Q gi|254780705|r 276 RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA-PL 354 (425)
Q Consensus 276 ~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta-~l 354 (425)
..+...+.+....+.+|+.++....+++++|++++|||..+||++||+++||++|+.+|+++++.++++...++|.. |.
T Consensus 149 ~~~~~~~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~ 228 (290)
T d2r6gg1 149 GLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVAS 228 (290)
T ss_dssp STTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 35741344222355036420013205411116666568653997788889988886312566678787664411011441
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998543210136656134455799999986036650069999999999999999999999999997410
Q gi|254780705|r 355 LFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKK 423 (425)
Q Consensus 355 l~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~ 423 (425)
++.++. ...|+++.+|.+..+....+ ...+|++.+.++.++ ++..+++|+|.|
T Consensus 229 ~~~~~~------------~~~t~~~~i~~~~~~~~~~~-~~~~A~~~i~~i~~~---i~~~~~~r~~~~ 281 (290)
T d2r6gg1 229 LLLRDV------------NSYTLAVGMQQYLNPQNYLW-GDFAAAAVMSALPIT---IVFLLAQRWLVN 281 (290)
T ss_dssp HHCCSG------------GGCCHHHHGGGGBCSSCBCH-HHHHHHHHHTHHHHH---HHHHHHTTTCCS
T ss_pred ECCCCC------------CCEEHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_conf 113798------------71669999999984405309-999999999999999---999999999998
No 3
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.90 E-value=5.9e-22 Score=155.76 Aligned_cols=199 Identities=18% Similarity=0.183 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
Q ss_conf 1202667899999999999999999999999998643730245678989988765336999999999999862666----
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP---- 275 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~---- 275 (425)
....|.++..|+..+.++.++++.+|+..|.++..+ +.+.++.++........+|.++.++....++.+.....
T Consensus 44 ~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~--~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~~~~~~~~ 121 (252)
T d2onkc1 44 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK--SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP 121 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 978999999999999999999999999999999873--132168999998752168717777777641233210001245
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---30046897533454366899999999851106789899870772127777883975332589999999999876779
Q gi|254780705|r 276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352 (425)
Q Consensus 276 ---~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta 352 (425)
..+...-.++++.+.+|+.+...+++++++|++++|||..+|+|+||+++||++|.++|+++++.++++..+++|.+
T Consensus 122 ~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~ 201 (252)
T d2onkc1 122 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG 201 (252)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44200133211010011211036899999975038888788766998332546987087688999999999988999988
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999854321013665613445579999998603665006999999999999999999999999
Q gi|254780705|r 353 PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLW 416 (425)
Q Consensus 353 ~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~ 416 (425)
..++.|+. ..+++..+|....+.+.. .+.+.+.+++++.+.+.....+
T Consensus 202 ~~~~~~~~-------------~~~~~~~i~~~~~~~~~~---~~~a~~~il~~~~~~~~~~~~~ 249 (252)
T d2onkc1 202 AVVVIAYY-------------PMIAPTLIYERYLSEGLS---AAMPVAAILILLSLAVFVALRI 249 (252)
T ss_dssp HHHTTCCS-------------SCCHHHHHHHHHHHHCGG---GTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-------------CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87511489-------------851999999999805899---9999999999999999999999
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=7e-21 Score=148.91 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999999998626------
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFK------ 273 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~------ 273 (425)
....+.++..|+..+.+++++++++|...|..++.+ +.|.+++.+..+-....+|+++.|+....++.+..|
T Consensus 14 ~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~--~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l 91 (244)
T d2r6gf2 14 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE--ALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMML 91 (244)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999999999999999999999999999847--420478999999999984088999999998752355146666
Q ss_pred -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----6-------6300468975334543668999999998511067898998707721277778839753325899999
Q gi|254780705|r 274 -----M-------PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGST 341 (425)
Q Consensus 274 -----~-------~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~i 341 (425)
. +..+...-.++.....+|+.+...+++++++|+++.|||.-+||++||+++||++|+.+|+++++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~i 171 (244)
T d2r6gf2 92 SALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMI 171 (244)
T ss_dssp HHTSSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 55302677410127799999999999971027799999999759999989999749976577499985446899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999876779999985432101366561344557999999860366-50069999999999999999999
Q gi|254780705|r 342 VSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADA-ERPFVERTFGAILLLLIFLAVIN 411 (425)
Q Consensus 342 l~~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~-~~~~~~~~~aa~lvLl~~~~~~n 411 (425)
+.+..+++|.....+.++.+.....-..+...+.+++.++|....+. .......++|.+.+++++++++.
T Consensus 172 l~fi~~~~~f~~~~~l~~ggp~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~aaA~avil~viv~~l~ 242 (244)
T d2r6gf2 172 ASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALA 242 (244)
T ss_dssp HHHHHHHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999720056764425888875556663049999999999999862532529999999999999999999
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=5.5e-21 Score=149.57 Aligned_cols=191 Identities=20% Similarity=0.188 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 667899999999999999999999999998643-----730245678989988765336999999999999862666300
Q gi|254780705|r 204 GVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS-----HKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRST 278 (425)
Q Consensus 204 ~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a-----~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~ 278 (425)
+.++..|+.++++++++++.+|+..|+++..+. ...++.+.+......+.++|.++...+....+...++... +
T Consensus 5 l~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~-~ 83 (203)
T d3dhwa1 5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI-G 83 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C
T ss_conf 999999999999999999999999999999987444320089999999999999999999999999986355404541-1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46897533454366899999999851106789899870772127777883975332589999999999876779999985
Q gi|254780705|r 279 ALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 (425)
Q Consensus 279 ~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~ 358 (425)
..++.+++.+...|++++..+++++++|++++|||..+|+|+||+++||++|.++|++++|.++.+.++++|++...++|
T Consensus 84 ~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig 163 (203)
T d3dhwa1 84 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998648999999988884362068999886994442418840997699999999999999999999999997
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 432101366561344557999999860366500699999999999999999999
Q gi|254780705|r 359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINT 412 (425)
Q Consensus 359 ~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~ 412 (425)
+. .+...++......... +..++..+++++++..++.
T Consensus 164 ~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~v~li~~ 200 (203)
T d3dhwa1 164 AG---------------GLGQIGYQYGYIGYNA--TVMNTVLVLLVILVYLIQF 200 (203)
T ss_dssp CC---------------HHHHHHHHHHHSSCCT--THHHHHHHHHHHHHHHHHH
T ss_pred HH---------------HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHH
T ss_conf 75---------------9999999999874028--9999999999999999999
No 6
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=19.18 E-value=19 Score=12.37 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5110678989987077212777788397533258
Q gi|254780705|r 303 RTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAI 336 (425)
Q Consensus 303 ~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi 336 (425)
...||+++|-+-++|.+--.++.+++--+...|.
T Consensus 21 ~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~ 54 (71)
T d1jhfa1 21 TGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGV 54 (71)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTS
T ss_pred HCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 2889889999977299999999999999999759
No 7
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=8.27 E-value=17 Score=12.60 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=41.8
Q ss_pred HHHHHHCCHHHHHHHHHHHHCHHHCCCEE-EEEEEECCCCHHHHCCCCCCCCHHCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 89987300168999999740632159747-899970453023303455653000059-999999999998745664
Q gi|254780705|r 109 QASQMLSTTARYHLRKTLMTDPSLIGKTV-EVSLLASANIDSALKGYLYSPANVHRM-SDYQWKWFQKLDSDGALF 182 (425)
Q Consensus 109 ~l~~liS~~a~~~Lrd~v~~np~liG~t~-~~~llAsddvD~~~KG~i~r~e~~rri-sd~ql~~~d~L~~~g~i~ 182 (425)
++.+....+.+|++.-++-.||++.|+.. .+.+...+++....+.++.- ...-+ +...-+.+|.+.+.| ++
T Consensus 17 ~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~i--ai~~i~~~~~~~I~d~l~~~g-Ik 89 (126)
T d2dt5a2 17 ALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEI--ALLTVPREAAQKAADLLVAAG-IK 89 (126)
T ss_dssp HHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCE--EEECSCHHHHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHCCCCEEEEEEECCHHHCCCEECCEEEECHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHHHHCC-CC
T ss_conf 99972754699579999908657549798999991478989998516629--999089999999999999869-99
No 8
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.61 E-value=42 Score=10.14 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 006999999999999999999
Q gi|254780705|r 390 RPFVERTFGAILLLLIFLAVI 410 (425)
Q Consensus 390 ~~~~~~~~aa~lvLl~~~~~~ 410 (425)
..-.+.+|+++++...|.+.+
T Consensus 3 p~iv~~awaa~~atfsfslsl 23 (31)
T d1q90n_ 3 PAIVQIGWAATCVMFSFSLSL 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEHHHHHHHHHHEEEEEE
T ss_conf 479883798898742225889
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.98 E-value=46 Score=9.91 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780705|r 211 LYMMLIVIGLSFPLGIASAI 230 (425)
Q Consensus 211 l~~~~ia~~ia~pigv~~ai 230 (425)
+|..++++.+++.+|+.-||
T Consensus 7 fyivfialffgiavgiifai 26 (32)
T d2e74e1 7 FYIVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEEEE
T ss_conf 79999999997886321457
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.11 E-value=55 Score=9.43 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=0.0
Q ss_pred CCCHHHCCCCCCCC
Q ss_conf 22023213443211
Q gi|254780705|r 185 FNYGFFINGASSRP 198 (425)
Q Consensus 185 fn~~f~t~~~s~~~ 198 (425)
|-.+|+.+.++|+|
T Consensus 19 FiFGFLSnDP~RnP 32 (35)
T d2axti1 19 FVFGFLSGDPARNP 32 (35)
T ss_dssp HHHHHHTTCTTCSS
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99863058998898
Done!