RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 221 bits (566), Expect = 2e-58
Identities = 107/251 (42%), Positives = 144/251 (57%), Gaps = 3/251 (1%)
Query: 177 SDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS 236
G L N FF S E GIG A+VG+LY++L+ I + PLGI + IYL E++
Sbjct: 43 IRGIPALSLNLEFFTGSPSPPGEGGGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYA 102
Query: 237 HKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIII 296
K + ++ I+ LASVPSIVYG+ G + +AL G L LAL+ LP +I
Sbjct: 103 KKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLG-FGFSALAGALALALLMLPVVIR 161
Query: 297 ATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356
T ALR VP S+R AA LGA+K QT+F VLP A+P I+TG +++ARA GETAPLLF
Sbjct: 162 TTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGETAPLLF 221
Query: 357 -VGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERP-FVERTFGAILLLLIFLAVINTAM 414
GM A +P + A PV IY+ A P E +GA L+LL+ + ++N
Sbjct: 222 TAGMSANSPSWPTDLLTPVAALPVHIYMLATSGPSPEAQELAWGAALVLLLIVLLLNLLA 281
Query: 415 LWLRNRFKKRW 425
LR RF+K+
Sbjct: 282 RLLRRRFRKKL 292
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 117 bits (295), Expect = 5e-27
Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 194 ASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLA 253
++ G + G+L LI + ++ P+GI +AI+L E++ ++ I LA
Sbjct: 68 PTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLA 127
Query: 254 SVPSIVYGILGSAVLINFFK------------MPRSTALVGGLILALMTLPSIIIATGVA 301
+PS+VYG G VL F + + L G++LA+M LP+I + A
Sbjct: 128 GIPSVVYGFFGLFVLAPFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDA 187
Query: 302 LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVA 361
LR VP S+R AA LGA+K +T+ +LP A I+ + L RALGET + V
Sbjct: 188 LRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRALGETMAVTMVIGNT 247
Query: 362 FVTDYPVGVTDIATAFPVQIYLWAADAERPFVERT-FGAILLLLIFLAVINTAMLWLRNR 420
P+ + T I +A F L+L + ++N ++ R
Sbjct: 248 AR--IPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRR 305
Query: 421 FKKR 424
+++
Sbjct: 306 RRRK 309
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others..
Length = 190
Score = 76.2 bits (188), Expect = 2e-14
Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Query: 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLI 269
+L + LI L+ LG+ I L +G ++ I+ L S+PS+V G+L +
Sbjct: 4 TLLLALIATLLALVLGLLLGIILARK--RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFG 61
Query: 270 NFFKMP--RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHH 327
L ++ L+ P + AL ++P + AA LGAS Q
Sbjct: 62 VLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRI 121
Query: 328 VLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAA 386
+LPLA+P ILTG ++ ARALGE A + F+G G+ I AA
Sbjct: 122 ILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG-PGTGLLLIFAILFPGDLGVAA 179
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 733
Score = 62.0 bits (150), Expect = 3e-10
Identities = 41/147 (27%), Positives = 70/147 (47%)
Query: 279 ALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILT 338
ALV G + +P+I A+ +VP S+ +L LGA+ QT+ + VL A P I +
Sbjct: 584 ALVVGFAMGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFS 643
Query: 339 GSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFG 398
+ L RA+GET +L + D+ + A + + + ++ F
Sbjct: 644 AIMIGLGRAVGETMIVLMATGNTPLLDWNIFEGMRTLAANIAVEMPESEVGSAHYRVLFL 703
Query: 399 AILLLLIFLAVINTAMLWLRNRFKKRW 425
A L+LL F +NT W+R R ++++
Sbjct: 704 AALVLLTFTFAVNTLAEWVRQRLREKY 730
Score = 28.8 bits (64), Expect = 3.0
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 370 VTDIATAFP-VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425
++ A P V I A PFVE +L L++ L + + ++ +R K W
Sbjct: 472 TIELMEALPTVIIGFLAGLWLAPFVESHLPGVLALMLLLPLSILLLGFIWSRLPKAW 528
Score = 28.1 bits (62), Expect = 4.4
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 209 GSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVL 268
G+L + + PL +A AIY F V+ I + ++P+++ G L L
Sbjct: 434 GTLKAAAYAMLFAMPLAVAGAIYTAYFMTPS-MRRVVKPTIELMEALPTVIIGFLAGLWL 492
Query: 269 INFFKMPRSTALVGGLILALMTLPSIIIA 297
F + + L G L L L+ SI++
Sbjct: 493 APFVE----SHLPGVLALMLLLPLSILLL 517
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 225
Score = 60.6 bits (147), Expect = 7e-10
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILG- 264
A++ SL + LI L PLGIA A L + S +++ + +P +V G L
Sbjct: 8 ALLLSLKVALISTLLLLPLGIALAYLLARR--RFRGKSLLESLVLLPLVLPPVVLGFLLL 65
Query: 265 ---------SAVLINFFKMPRSTALVGGLILAL-MTLPSIIIATGVALRTVPSSIRSAAL 314
L ++F + + + G ++ ++ ++LP ++ +A + + AA
Sbjct: 66 VLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAAR 125
Query: 315 GLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE-TAPLLFVGMVAFVTDYPVGVTDI 373
LGAS+ + F LPLA+P IL G +S ARALGE A L+F G + T
Sbjct: 126 TLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAGNIPGETQ-------- 177
Query: 374 ATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
P+ IY +L+L++ ++ WL R KR
Sbjct: 178 --TLPLAIYTAVQAGN---YALAHRLVLILVVISLLVLFVSEWLARRSSKR 223
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 60.6 bits (147), Expect = 8e-10
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 24/250 (9%)
Query: 177 SDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS 236
+ L L F GF + + + A+ SL + L+ L+ LG +A+ L +
Sbjct: 37 NSSRLGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARY- 95
Query: 237 HKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILA--LMTLPSI 294
+ + ++ I VP IV GI +L +P ++LA + LP +
Sbjct: 96 -RFRGKNLLEGLILLPLVVPDIVTGI-ALLLLFAALGLPGGF---WTIVLAHIVFALPFV 150
Query: 295 IIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPL 354
++ L+ S+ AA LGAS QT LPL +P IL+G+ ++ + E
Sbjct: 151 VVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVIT 210
Query: 355 LFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAM 414
F+ F T P+QIY P A+ LL+ L+++ +
Sbjct: 211 FFLAGPGFTT------------LPLQIYSMIRRGITP----EINALSTLLLLLSLLLILL 254
Query: 415 LWLRNRFKKR 424
R + R
Sbjct: 255 ASRLLRRRAR 264
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 58.3 bits (141), Expect = 4e-09
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 24/227 (10%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGIL-- 263
A+ +L L+ G+ A L + G V A ++ ++P+ V GI
Sbjct: 58 ALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPG--KRLVDALVDLPFALPTAVAGIALL 115
Query: 264 ---GSAVLINFFKMPRSTALV---GGLILAL--MTLPSIIIATGVALRTVPSSIRSAALG 315
G L+ P G+I+A+ ++LP ++ L + AA
Sbjct: 116 LLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARS 175
Query: 316 LGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIAT 375
LGAS +QT +LPL +PA+L G +S AR++GE G V + T+
Sbjct: 176 LGASPLQTFRRVILPLLLPALLAGFILSFARSIGE------FGAVLIIAGNTPYKTETL- 228
Query: 376 AFPVQIYLWAADAERPFVERTFGAILLL--LIFLAVINTAMLWLRNR 420
P+ IY + +LLL I L VI R R
Sbjct: 229 --PLLIYTRLESYDLE-AAAAISVVLLLISFILLLVIRLLQSRARRR 272
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 57.7 bits (140), Expect = 5e-09
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 24/204 (11%)
Query: 221 SFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTAL 280
PLGI +A+ ++ I+ L ++PS V IL V+I+ + L
Sbjct: 1 GIPLGIIAALR-----RGRRLDRLLRPLIDLLQALPSFVLAIL--LVVISILSILGHGIL 53
Query: 281 VGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
++ L + ALR++PS + AA LGAS+ Q +LP A+P ILTG
Sbjct: 54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGL 113
Query: 341 TVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAI 400
++ ALG L F+G + +G+ I G +
Sbjct: 114 ALAFGGALGGAVLLEFLG-----SWPGLGLLLIEAILGYDY------------PEIQGPV 156
Query: 401 LLLLIFLAVINTAMLWLRNRFKKR 424
L + L ++N + L+ R
Sbjct: 157 LAAALILLLLNLLVDILQRLLDPR 180
>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
permease component [Amino acid transport and
metabolism].
Length = 221
Score = 54.0 bits (130), Expect = 9e-08
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLI 269
L +LI I + PLGI + + V N L ++PS+ +L A+LI
Sbjct: 35 VLLAVLIAILIGVPLGILV-------TRSRRLAGLVLGVANVLQTIPSL--ALL--ALLI 83
Query: 270 NFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVL 329
+ + A++ L L +L I+ T L +VP S+ AA G+G ++ Q + L
Sbjct: 84 PVLGIGLTPAIIA---LFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVEL 140
Query: 330 PLAMPAILTGSTVSLARALGETAPLLFVG 358
PLA+P IL G ++ +G +G
Sbjct: 141 PLALPVILAGIRTAVVINIGTATIAALIG 169
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
component [Inorganic ion transport and metabolism].
Length = 222
Score = 50.1 bits (120), Expect = 1e-06
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 39/237 (16%)
Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFS-----SFVQANINNLASV 255
+ A + +LYM+ + +F +G+ + L G + A +N L S+
Sbjct: 12 QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSI 71
Query: 256 PSIVYGILGSAVLINFFKMPRSTALVGGLI--------LALMTLPSIIIATGVALRTVPS 307
P I IL A++ P + +VG I L + P + ALR V
Sbjct: 72 PFI---ILLVALI------PLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDK 122
Query: 308 SIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYP 367
+ AA +GAS Q + +LP A+P +++G TV+L +G +A +G
Sbjct: 123 GVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIG--------G 174
Query: 368 VGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
G+ D+A + Q + + A+++LLI + +I + L R KR
Sbjct: 175 GGLGDLAIRYGYQRFNT---------DVMVVAVVILLILVQLIQSLGDRLVRRLDKR 222
>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system,
permease component [Amino acid transport and
metabolism].
Length = 290
Score = 48.6 bits (116), Expect = 3e-06
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 205 VAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILG 264
+A+V + ++ IVIG+ PLGI +A V+ ++ + ++P+ VY I
Sbjct: 98 LALVLTATLISIVIGI--PLGIWAA-------RSPRVYRIVRPILDLMQTMPTFVYLI-- 146
Query: 265 SAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTV 324
+ F + L+ +I A+ P +I T + +R VP+ + AA GA+ Q +
Sbjct: 147 --PAVMLFGLGNVPGLIATVIFAM---PPMIRLTNLGIRQVPAELIEAADAFGATPRQKL 201
Query: 325 FHHVLPLAMPAILTGSTVSLARALG 349
F LPLA+P I+ G ++ AL
Sbjct: 202 FKVQLPLALPTIMAGINQTIMLALS 226
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 45.6 bits (108), Expect = 2e-05
Identities = 51/235 (21%), Positives = 82/235 (34%), Gaps = 31/235 (13%)
Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLE--EFSHKGFFSSFVQANINNLASVPSI 258
+ + +L + ++V LS LGI A L +F + + + V ++
Sbjct: 52 PYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVAL 111
Query: 259 VY-GILGSAVLINFFK------MPRSTALVGG-LILALMTLPSIIIATGVALRTVPSSIR 310
+ + G + + P L G L L P + AL T+P S+
Sbjct: 112 AWISLFGPSGPLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLE 171
Query: 311 SAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGV 370
AA LGAS+ Q LPL PAI G+ + L + L +G
Sbjct: 172 EAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILG------------ 219
Query: 371 TDIATAFPVQIY-LWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
T IY + + LL + L +I A+L L R ++
Sbjct: 220 -GGYTTLETAIYQAIMSSFDLA-------RAALLALLLLLITAALLLLERRLRRA 266
Score = 40.2 bits (94), Expect = 0.001
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 215 LIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM 274
L+ + L+ L A + S ++ +VP +V + G +L
Sbjct: 347 LLAVVLALLLAYAVRRL------RSRLSRLLERLSMLPLAVPGVVLAL-GLLLLFRAPDG 399
Query: 275 PRSTALVGGLIL----ALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLP 330
L LIL AL LP + + ALR + S+ AA LGAS ++ LP
Sbjct: 400 LLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLP 459
Query: 331 LAMPAILTGSTVSLARALGETAPLLFVGMVAFVT 364
L P +L + + A ++GE + L +G T
Sbjct: 460 LLRPGLLAAAALVFALSIGELSATLLLGSPGTRT 493
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 43.3 bits (102), Expect = 1e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 284 LILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVS 343
+I L I+I T +R+V + A LGAS+ Q + +LP A+P I TG ++
Sbjct: 130 VIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIA 189
Query: 344 LARAL 348
+ A
Sbjct: 190 IGLAW 194
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
Length = 237
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 282 GGLILALM--TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
G++LA++ + P ++ L+ + + AA LGAS QT + + P +PA+LTG
Sbjct: 138 LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTG 197
Query: 340 STVSLARALGE 350
++ +RA+GE
Sbjct: 198 LALTFSRAIGE 208
>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism].
Length = 287
Score = 41.7 bits (98), Expect = 3e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 274 MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAM 333
+ TA++ G++ LP +I+ AL + S+ AA LGAS QT +LPL++
Sbjct: 150 LYTETAVIIGMVYIY--LPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSL 207
Query: 334 PAILTGSTVSLARALGE 350
P I+ GS + ALG
Sbjct: 208 PGIIAGSLLVFIPALGS 224
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 40.6 bits (95), Expect = 0.001
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLI 269
SL + L+ + +S +G + F G+ + + + PS++ IL A+L
Sbjct: 88 SLLIGLLAVLISLVIGTLLGLLAGYF--GGWVDRVLMRITDIFLAFPSLLLAILLVAIL- 144
Query: 270 NFFKMPRSTALVGGLILALMTLPSII-IATGVALRTVPSSIRSAALGLGASKVQTVFHHV 328
L L LAL+ P I G L AA LGAS ++ +F H+
Sbjct: 145 ------GPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHI 198
Query: 329 LPLAMPAILTGSTVSLARALGETAPLLFVGM 359
LP +P ++ +T+ + A+ A L F+G+
Sbjct: 199 LPNVLPPLIVLATLDIGGAILAEAGLSFLGL 229
>gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 287
Score = 37.6 bits (87), Expect = 0.008
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265
A+ +L + LI + L+ G+A+A + F G + + I+ SV +V G++
Sbjct: 66 AIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPG--KALLLTLIDLPFSVSPVVAGLV-- 121
Query: 266 AVLINFFKMPRSTALVGGLILALMTLPSIIIATG------VALRTVP------SSIRSAA 313
VL+ L I + +P I++AT VA +P + AA
Sbjct: 122 YVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAA 181
Query: 314 LGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350
L LGAS QT + LP +L G ++ ARA+GE
Sbjct: 182 LTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARAMGE 218
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 36.2 bits (84), Expect = 0.018
Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 23/244 (9%)
Query: 183 LDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFS 242
DF++G + P + G+ V +L + L+ I L LG+ A+ S
Sbjct: 1 YDFDFGALLLNLDYLPFLLK-GLLV--TLLLTLLSIVLGLVLGLLLALMR--LSGNKPLR 55
Query: 243 SFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVAL 302
+A + P +V L+ + + L+L + + +
Sbjct: 56 WLARAYVEIFRGTPLLVQLFFIYFGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGI 115
Query: 303 RTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAF 362
++VP AA LG + QT+ + +LP A+ IL + +T+ + +G+V
Sbjct: 116 QSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVEL 175
Query: 363 VTDYPVGVTDIATAF-PVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRF 421
A F P ++YL AA L+ LI ++ L R
Sbjct: 176 TR---AAQIIAARTFRPFEVYLLAA--------------LIYLILCLPLSLLSRRLERRL 218
Query: 422 KKRW 425
+
Sbjct: 219 ARYG 222
>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
permease component [Inorganic ion transport and
metabolism].
Length = 523
Score = 34.5 bits (79), Expect = 0.053
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 9/152 (5%)
Query: 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKG-FFSSFVQANINNLASVPS 257
+V I +A++ + ML+ I +S I + +L + K F + ++ L SVP
Sbjct: 3 DVLLIPLALLATAGRMLLAILIS----ILTGWFLAYAAIKSKRFENIYIPVLDVLQSVP- 57
Query: 258 IVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV--ALRTVPSSIRSAALG 315
V G ++ + P + + T + I + +TVPS + A
Sbjct: 58 -VLGFFPIVLIFFVYLFPGPLGVELAADFLVFTSVAWNIWFSEYQSFKTVPSDLLEVARN 116
Query: 316 LGASKVQTVFHHVLPLAMPAILTGSTVSLARA 347
S + + +P AMP I S++
Sbjct: 117 YRLSFLLRMARLYIPFAMPGIAANLMPSMSDG 148
>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 34.4 bits (79), Expect = 0.054
Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 32/239 (13%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGI--- 262
A+ +L +I + L LG+ A+ L K F + ++ S+V G+
Sbjct: 69 ALKNTLVFTVISVPLQLVLGLLLALLLN---RKLRGRGFFRTLFFLPWAISSVVAGLIWK 125
Query: 263 ----------------LGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVP 306
LG IN+ P + ++ +++ L+++P
Sbjct: 126 WLFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIP 185
Query: 307 SSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDY 366
+ AA GAS Q LPL P I + A +F +
Sbjct: 186 KELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQ-----VFDLIYLLTGGG 240
Query: 367 PVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425
P T + Y++ ++L + + ++ L L R ++R
Sbjct: 241 PGNATTT-----LAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRRKERRV 294
>gnl|CDD|33962 COG4239, COG4239, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 341
Score = 34.5 bits (79), Expect = 0.060
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 239 GFFSSFVQANINNLASVPSI-VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIA 297
G+ Q I + +P++ + IL S NF+ +L +M L +
Sbjct: 170 GWVDLLGQRFIEVWSGMPTLYLLIILASIFQPNFW-----------WLLGIMLLFGWMSL 218
Query: 298 TGVA----LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAP 353
GV LR AA LG S + + H+LP AM A LT L+ ++
Sbjct: 219 VGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTS 278
Query: 354 LLFVG 358
L F+G
Sbjct: 279 LDFLG 283
>gnl|CDD|34280 COG4662, TupA, ABC-type tungstate transport system, periplasmic
component [Coenzyme metabolism].
Length = 227
Score = 34.5 bits (79), Expect = 0.067
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 23/166 (13%)
Query: 205 VAVVGSLYMMLIVIGLSFPLG--IASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGI 262
V +LY+ LI I L+ +G +A + L EF K F + L S+P+++ G
Sbjct: 23 GIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINT----LLSMPTVLVG- 77
Query: 263 LGSAVLINFFKMPRSTAL--------VGGLIL--ALMTLPSIIIATGVALRTVPSSIRSA 312
L+ + + RS L +IL A++ LP +I AL +V ++
Sbjct: 78 -----LLLYLLLSRSGPLGWFNLLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKEL 132
Query: 313 ALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
A LGAS ++ ++ RA+ E + VG
Sbjct: 133 ARSLGASPLKLASTVFREARFG-LMAAVAAGFGRAVAEVGVAMMVG 177
>gnl|CDD|33891 COG4135, COG4135, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 551
Score = 32.7 bits (74), Expect = 0.20
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 288 LMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARA 347
L +P +++ + + S A LG S+ + F+ LPL A L V + +
Sbjct: 424 LFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFSVS 483
Query: 348 LGETAPLLFVGMVAFVT 364
+ + P L++G T
Sbjct: 484 IAQYLPTLWLGAGRLTT 500
>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 32.5 bits (74), Expect = 0.22
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 264 GSAVLINFFKMPRSTALVG---GLILALM--TLPSIIIATGVALRTVPSSIRSAALGLGA 318
+LI + + R L+ GLIL + LP I RT+P + AA GA
Sbjct: 123 AQVLLIPLYLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGA 182
Query: 319 SKVQTVFHHVLPLAMPAILT 338
S+ Q F VLPLA P +
Sbjct: 183 SEFQIFFKIVLPLAKPGLAA 202
>gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 32.2 bits (73), Expect = 0.27
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 14/193 (7%)
Query: 170 KWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYM----MLIVIGLSFPLG 225
+ DF FF + ++ I A++ +L + L+ L+ PL
Sbjct: 54 DFPLLFIGGANQMADFFSDFFPPDFALFSQLPDILTALLQTLAIAFAGTLLAAILAIPLA 113
Query: 226 IASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLI 285
+A S K + S V+ ++ + ++P +V+ +L F G L
Sbjct: 114 FLAA---RNLSPKRWISFPVRRLLDFIRTIPELVWALL-------FVAAFGLGPFAGVLA 163
Query: 286 LALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLA 345
L + T+ + AL ++ + A GAS++Q + VLP P ++ S
Sbjct: 164 LGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFE 223
Query: 346 RALGETAPLLFVG 358
+ A L VG
Sbjct: 224 SNIRAAAVLGLVG 236
>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 31.2 bits (71), Expect = 0.53
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 23/189 (12%)
Query: 179 GALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK 238
L DF F + + + + +L +++ + L PLGI +A+
Sbjct: 71 NLLHGDFGTSFVYKRPVADLILERLPATLELALVALILAVLLGIPLGILAALK-----RG 125
Query: 239 GFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILAL-------MTL 291
+ ++ S+PS G+L + + L
Sbjct: 126 SWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGRGSAGSWDSFLDALKHLIL 185
Query: 292 PSIIIA---TGVALRTVPSSIRS--------AALGLGASKVQTVFHHVLPLAMPAILTGS 340
P++ + R SS+ A G S+ + +F H L A+ ++T
Sbjct: 186 PALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVL 245
Query: 341 TVSLARALG 349
+ L LG
Sbjct: 246 GLQLGGLLG 254
>gnl|CDD|35453 KOG0232, KOG0232, KOG0232, Vacuolar H+-ATPase V0 sector, subunits
c/c' [Energy production and conversion].
Length = 156
Score = 28.3 bits (63), Expect = 4.5
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 290 TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILT----GSTVSLA 345
+ A G A T S AA+ + + + ++P+ M I+T V ++
Sbjct: 15 AAAMVFSALGAAYGTAKSGTGIAAMS--VMRPELIMKSIIPVVMAGIITIYGLVVAVVIS 72
Query: 346 RALG--ETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLL 403
+G TA LF G + VG+ ++ + I A R R F ++L+
Sbjct: 73 GDIGPKGTAYSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILI 132
Query: 404 LIFLAVI 410
LIF V+
Sbjct: 133 LIFAEVL 139
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 28.0 bits (63), Expect = 4.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 346 RALGETAPLLFVGMVAFVTDYPVGVTDIATA--FPVQIYLW 384
R GET P G+ T P+GV + T FP+ I W
Sbjct: 114 RLSGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPAW 154
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 27.9 bits (63), Expect = 5.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 344 LARAL-GETAPLLFVGMVAFVTDYPVGVTDIATA--FPVQIYLW 384
LAR L GE P G +A V P+GV T FP+ + W
Sbjct: 72 LARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAW 115
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
component [Amino acid transport and metabolism].
Length = 230
Score = 27.8 bits (62), Expect = 5.8
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV 360
A + VP AA LG S+ QT VLP L G L +TA + +G+
Sbjct: 119 AFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLN 178
Query: 361 AFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNR 420
+ + +T P Y+ AA L+ L+ V N +L+L R
Sbjct: 179 DLMRQTQLAAG--STKEPFTFYIVAA--------------LIYLVITLVSNVVLLFLERR 222
Query: 421 FKKR 424
+
Sbjct: 223 ASRG 226
>gnl|CDD|39210 KOG4007, KOG4007, KOG4007, Uncharacterized conserved protein
[Function unknown].
Length = 229
Score = 27.7 bits (61), Expect = 6.0
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 25 CVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRAD 84
++ +L++++ ++ L ++ K + A +Q H E S + + D LRA
Sbjct: 142 SIIGILLLYMVFLMCLDPLLRKRVKANYQEHNDEDDEDSPSPANA-----ADNLGELRAR 196
Query: 85 YNLLVR 90
N+L R
Sbjct: 197 ANVLNR 202
>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 27.8 bits (62), Expect = 6.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 304 TVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350
T+P S+ AA GA++ Q +LPL+ P + + ++ G+
Sbjct: 168 TIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGD 214
>gnl|CDD|145989 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 27.7 bits (62), Expect = 7.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 286 LALMTLPSIIIATG------VALRTVPSSIRSAALGLG 317
L LM + S I A + LR VP +S ALG+
Sbjct: 498 LILMCILSFIGALSAIPLYMLVLRCVPPEEKSLALGVQ 535
>gnl|CDD|30654 COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion
transport and metabolism].
Length = 326
Score = 27.5 bits (61), Expect = 8.4
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 180 ALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKG 239
ALF FN G + +G AV + L+ A+ +
Sbjct: 12 ALFFAFNIGANDTANA-------VGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAET 64
Query: 240 FFSSFVQANINNLASVPSIVYGILGSAVLIN----FFKMPRST--ALVGGLILALMTLPS 293
S V + N + P+ V L +A+L N + +P ST AL+G +I A + L
Sbjct: 65 IGSGIVDPGLLNDSLTPAGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGG 124
Query: 294 IIIATGVALRTVPSSIRSAALGLGAS 319
++ GV + V S + S LG +
Sbjct: 125 GVVDWGVLGKIVASWVLSPILGGVLA 150
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 27.1 bits (61), Expect = 9.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 342 VSLARAL-GETAPLLFVGMVAFVTDYPVGVTDIATA--FPVQIYLW 384
V L+R L G T P G P+GV + TA FPV + W
Sbjct: 107 VGLSRMLYGLTIPSERPGHRLMEQWNPLGVVGVITAFNFPVAVPGW 152
>gnl|CDD|107276 cd06281, PBP1_LacI_like_5, Ligand-binding domain of uncharacterized
DNA-binding regulatory proteins that are members of the
LacI-GalR family of bacterial transcription repressors.
This group includes the ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that are
members of the LacI-GalR family of bacterial
transcription repressors. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 269
Score = 27.3 bits (61), Expect = 9.5
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 36 LILLLSSIVSKGIGALWQTHISLPIEFSE-TIVDPQKKRFMDPAI-LLRADYNLLVRKAL 93
+I + ++ + AL + + +P + S +I D MDP I LR D + R A
Sbjct: 180 IIAGGTQVLVGVLRALREAGLRIPRDLSVISIGDSDLAELMDPPITALRRDREAVGRTAA 239
Query: 94 ARKLS 98
L
Sbjct: 240 ELMLD 244
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.139 0.407
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,111,387
Number of extensions: 282175
Number of successful extensions: 1427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 142
Length of query: 425
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 329
Effective length of database: 4,189,273
Effective search space: 1378270817
Effective search space used: 1378270817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)