RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] (425 letters) >gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 271 Score = 188 bits (480), Expect = 2e-48 Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 9/243 (3%) Query: 185 FNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSF 244 N GFF + GIG A+VG+L ++L+ I ++ PLGI +AIYL E++++ F+ Sbjct: 34 LNLGFFTKSPTPTGAEGGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYANESRFTKV 93 Query: 245 VQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRT 304 ++ ++ LA VPSIV G+ G + + L G L LAL+ LP II T AL+ Sbjct: 94 IRFAVDILAGVPSIVVGLFGYGFFVLTMLGGGFSLLAGALALALLILPVIIRTTEEALKA 153 Query: 305 VPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF-VGMVAFV 363 VP +R A+ LGA+K QT+F VLP A+P ILTG +S+ARA GETAPLLF G AF Sbjct: 154 VPKDLREASYALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFT 213 Query: 364 TDYPVGVTDIATAFPVQIYLWAADAERPFVE---RTFGAILLLLIFLAVINTAMLWLRNR 420 P + D PV IY A +E P+ E + A L+L++ + ++N LR R Sbjct: 214 ---PPNLFDPFATLPVLIYNLA--SEGPYSEAQQLAWAAALVLILLVLLLNLIARLLRRR 268 Query: 421 FKK 423 FKK Sbjct: 269 FKK 271 Score = 27.6 bits (62), Expect = 6.2 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 20 LFRFYCVVAVLVVFVFLILLLSSIVSKGIGAL 51 +F F +++ L+ LI +L I+ KG+ AL Sbjct: 3 IFTFISLLSALLALGPLIWILIYILIKGLPAL 34 >gnl|CDD|152248 pfam11812, DUF3333, Domain of unknown function (DUF3333). This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 116 to 159 amino acids in length. Length = 155 Score = 144 bits (365), Expect = 4e-35 Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 2/147 (1%) Query: 8 KKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIV 67 LK RY +E FR Y + A+L+ FL++LL SIVS G GA QT I+L + E ++ Sbjct: 2 DARLKKRYAAERRFRAYGLAAILIGLAFLVILLGSIVSNGYGAFQQTEITLEVTLDEEVL 61 Query: 68 DPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLM 127 DP R DP L A+Y L++ AL L L ++S A LR ++ Sbjct: 62 DPDGNR--DPKKLSTANYRPLIKDALEELLPEVGDRSDLRSDLYSLISEGAAAQLRDFVL 119 Query: 128 TDPSLIGKTVEVSLLASANIDSALKGY 154 +P LIG TV LLAS+++D LKG Sbjct: 120 ANPELIGTTVTFWLLASSDVDGYLKGR 146 >gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 295 Score = 109 bits (275), Expect = 1e-24 Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 19/248 (7%) Query: 192 NGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINN 251 G+ E G +VG+L LI + ++ P+GI AI+L E + K S ++ + Sbjct: 50 PGSGPVQEQYGALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPK-RVRSVLKPVVEL 108 Query: 252 LASVPSIVYGILGSAVLINFFK---------------MPRSTALVGGLILALMTLPSIII 296 LA +PS+VYG G VL+ F K + L G++LA+M LP+I Sbjct: 109 LAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIAS 168 Query: 297 ATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356 + ALR VP S + A+ LGA+K +T+ +LP A I+ + L RALGET + Sbjct: 169 ISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTM 228 Query: 357 VGMVAFVTDYPVGVTDIATAFPVQIYLWAADAE--RPFVERTFGAILLLLIFLAVINTAM 414 V F P+ + D T I +A F L+L + ++N Sbjct: 229 VIGNVFPI-SPLSLFDPGTTITSLIANQFGEASGGSVHTSALFALGLVLFVITLLVNILA 287 Query: 415 LWLRNRFK 422 ++ R + Sbjct: 288 RYIVRRRR 295 >gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional. Length = 295 Score = 90.5 bits (225), Expect = 8e-19 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%) Query: 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINN-LASVPS 257 G+ A+ GS ++L + PLGI + IYL E+ K + + ++ IN+ L S PS Sbjct: 75 AGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRF-INDILLSAPS 133 Query: 258 IVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317 IV G+ +++ +M + G + LAL+ +P +I T L+ VP S+R AA LG Sbjct: 134 IVVGLFVYTIVVA--QMEHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALG 191 Query: 318 ASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356 K + + L ++ I+TG +++AR GETAPLLF Sbjct: 192 TPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230 >gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional. Length = 319 Score = 54.3 bits (131), Expect = 6e-08 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%) Query: 185 FNYGFFINGASSRP-EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSS 243 F F P ++ G V + G+L I + ++ P+ A++L E + G+ Sbjct: 52 FGLSFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELA-PGWLKR 110 Query: 244 FVQANINNLASVPSIVYGILG----SAVLINFFKMPRSTALVG----------------- 282 + I LA++PSIVYG+ G + + +F+ P L Sbjct: 111 PLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGALFSGPAFGIGI 170 Query: 283 ---GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 G+ILA+M +P I P ++ +A G+G + + ++ VLP ++ G Sbjct: 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGG 230 Query: 340 STVSLARALGETAPLLFV 357 + L RALGET + F+ Sbjct: 231 VMLGLGRALGETMAVTFI 248 >gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. Length = 208 Score = 53.8 bits (130), Expect = 9e-08 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 13/132 (9%) Query: 283 GLILA--LMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340 G +LA +++ P ++ A V + AA LGAS++QT LPLA P +L G Sbjct: 82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASEIQTFLKVTLPLAFPGLLAGC 141 Query: 341 TVSLARALGE-TAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGA 399 +S ARALGE A L+F G + G T P+ IY + + Sbjct: 142 VLSFARALGEFGATLMFAGNIP-------GETQTI---PLAIYDAVESDYELAHQLSLVL 191 Query: 400 ILLLLIFLAVIN 411 + LI L ++ Sbjct: 192 LAFSLIVLLLVE 203 >gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity. Length = 225 Score = 48.2 bits (115), Expect = 4e-06 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 14/131 (10%) Query: 283 GLILA--LMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340 G++LA + P + ++V A LGA ++T LP+A P +L G Sbjct: 105 GVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGL 164 Query: 341 TVSLARALGE-TAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGA 399 ++ ARALGE A L+F G + T P+ IYL Sbjct: 165 VLAWARALGEFGATLMFAGSIQGKTR----------TLPLAIYLNIQSDNIEAAV-ASAL 213 Query: 400 ILLLLIFLAVI 410 +LL++ FL ++ Sbjct: 214 LLLVIAFLLLL 224 >gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. Length = 265 Score = 46.9 bits (112), Expect = 9e-06 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 283 GLILAL--MTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340 G+++AL ++LP ++ L + + AA LGAS+ QT + +LP +PA+LTG Sbjct: 134 GIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGF 193 Query: 341 TVSLARALGETAPLLFV 357 ++ ARA+GE ++F+ Sbjct: 194 ALAFARAVGEYGSVIFI 210 >gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein; Reviewed. Length = 229 Score = 45.3 bits (108), Expect = 3e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 287 ALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLAR 346 A+M P ++ A ++L V + AA LGAS + F LPL +P I+ G+ ++ AR Sbjct: 100 AVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFAR 159 Query: 347 ALGETAPLLFVGMVAFVTDYP 367 +LGE F + FV++ P Sbjct: 160 SLGE-----FGATITFVSNIP 175 >gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein; Provisional. Length = 355 Score = 44.3 bits (105), Expect = 6e-05 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 16/148 (10%) Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVY 260 A + +A+V + + IVIGL PLGI A + ++ ++ + + P+ VY Sbjct: 146 AMVTLALVLTALLFCIVIGL--PLGIWLA-------RSPRAAKIIRPLLDAMQTTPAFVY 196 Query: 261 GILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASK 320 L V++ F + +V +I AL P I+ T + + VP+ + A+ GAS Sbjct: 197 --LVPIVML--FGIGNVPGVVVTIIFAL---PPIVRLTILGINQVPADLIEASRSFGASP 249 Query: 321 VQTVFHHVLPLAMPAILTGSTVSLARAL 348 Q +F LPLAMP I+ G +L AL Sbjct: 250 RQMLFKVQLPLAMPTIMAGVNQTLMLAL 277 >gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 272 Score = 42.3 bits (99), Expect = 2e-04 Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 217 VIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP- 275 L+ LG A A+ LE +G + + A ++PS+ LG A+LI F P Sbjct: 82 AFALACGLGAALALALEGRKRQGV-GALLDALFMLPNAIPSVS---LGLAILIAFHAGPL 137 Query: 276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLA 332 S A+V AL+ L AL + I AA LGA + H +LPL Sbjct: 138 DLNGSLAIVLFAHFALI-LAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLL 196 Query: 333 MPAILTGSTVSLARALGETAPLLFVGMVAFVT 364 MPAI+ + A +LGE L + F T Sbjct: 197 MPAIMAALALGFALSLGELGATLMIYPPGFAT 228 >gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein. Length = 267 Score = 41.2 bits (97), Expect = 6e-04 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 16/143 (11%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265 A+V S ++ +VIG+ PLGIA+A H+ + + ++ ++ + ++P+ VY I Sbjct: 93 ALVLSATVVCMVIGV--PLGIAAA-------HRPWLYAIMRPVLDLMQTLPTFVYLI--- 140 Query: 266 AVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVF 325 + F + L+ +I A+ P+ I T + + +VP + A GA+ Q ++ Sbjct: 141 -PALVLFGLGMVPGLISTVIFAI---PAPIRLTHLGISSVPQELVEAGEAFGATPSQLLW 196 Query: 326 HHVLPLAMPAILTGSTVSLARAL 348 LP AMP I+ G T ++ +L Sbjct: 197 KVELPYAMPQIMAGLTQTIMLSL 219 >gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). Length = 312 Score = 40.4 bits (94), Expect = 0.001 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 281 VGGLILALMTL--PSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILT 338 GG+ILA +T P ++ A + + AA LGA + + P A+PAI Sbjct: 180 AGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAA 239 Query: 339 GSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIAT 375 G + L E LLF+G +T P+ + A Sbjct: 240 GGILCFLLTLNEFGILLFIGAAGLIT-LPMAIYSKAI 275 >gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional. Length = 277 Score = 40.1 bits (94), Expect = 0.001 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 286 LALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLA 345 +A ++P ++ L + AA LGA++ Q+ VLP PA+L G +S Sbjct: 147 MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206 Query: 346 RALGETAPLLFV-GMVAFVTD 365 R+LGE ++F+ G +A+ T+ Sbjct: 207 RSLGEFGAVIFIAGNIAWKTE 227 >gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional. Length = 296 Score = 39.6 bits (93), Expect = 0.001 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 282 GGLILALMTL--PSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 GG+ILA +T P ++ A + + AA LGAS + +LP A PA+ G Sbjct: 162 GGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221 Query: 340 STVSLARALGETAPLLFVGMVAFVT 364 ++ L L E +LF G VT Sbjct: 222 GSLCLLLTLNEFGIVLFTGAKDVVT 246 >gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed. Length = 285 Score = 39.7 bits (93), Expect = 0.002 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 274 MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAM 333 M +A++ GL+ L LP +++ ++ + + AA LGA+K+QT ++PL M Sbjct: 147 MFTESAVIIGLVYIL--LPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTM 204 Query: 334 PAILTGSTVSLARALG 349 P I+ G + L A+G Sbjct: 205 PGIIAGCLLVLLPAMG 220 >gnl|CDD|162725 TIGR02140, permease_CysW, sulfate ABC transporter, permease protein CysW. This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. Length = 261 Score = 37.4 bits (87), Expect = 0.007 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 26/158 (16%) Query: 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGIL-----G 264 +L + LIV+ L+ G+ +A L F G + I+ SV +V G++ G Sbjct: 52 TLLVALIVVPLNTVFGVCAAWVLTRFQFPG--KRLLLTIIDLPFSVSPVVAGLIFVLLYG 109 Query: 265 SAVLINFFKMPRSTALVGGLILALMTLPSIIIAT------GVALRTVP------SSIRSA 312 S + + I + +LP I++AT VA +P + A Sbjct: 110 SQGWLGPWLEDL-------DIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEA 162 Query: 313 ALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350 AL LGAS QT + LP +L G + ARA+GE Sbjct: 163 ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGE 200 >gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein. This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. Length = 271 Score = 36.6 bits (85), Expect = 0.011 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 14/134 (10%) Query: 283 GLILALM--TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340 G+ LA++ +LP ++ L + + AA LGAS QT + LP A+L G Sbjct: 144 GMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGV 203 Query: 341 TVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAI 400 ++ ARALGE G V V+ G T P+ I + P A+ Sbjct: 204 VLTFARALGE------FGAVVVVSGNIPGKTLTL---PLLIEERLEQYDYP-GAYVIAAV 253 Query: 401 LLL--LIFLAVINT 412 LLL L+ L +IN Sbjct: 254 LLLVSLVTLFLINA 267 >gnl|CDD|181912 PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed. Length = 256 Score = 34.6 bits (80), Expect = 0.046 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%) Query: 226 IASAIYLEEFSHKGFFSS--FVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGG 283 A A+Y F K F S FV + P IV I ++L+ F + Sbjct: 80 TAVALYRYRFRGKKFVSGMLFV------VMMSPDIVMAI---SLLVLFMLLGIQLGFWS- 129 Query: 284 LILALMT--LPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 L+ A +T LP +++ L+ + AA LGAS+ + +LPLA+PA+ G Sbjct: 130 LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187 >gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional. Length = 275 Score = 33.2 bits (76), Expect = 0.12 Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 312 AALGLGASKVQTVFHHVLPLAMPAILTGSTVSL 344 AA LGAS+ Q ++ +LP A+P ILTG + L Sbjct: 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGL 207 >gnl|CDD|182646 PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional. Length = 317 Score = 33.1 bits (76), Expect = 0.12 Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 291 LPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350 LP +++ AL + S+ AAL LGA ++T F ++PL I+ GS + A+GE Sbjct: 196 LPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGE 255 >gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional. Length = 281 Score = 32.9 bits (75), Expect = 0.15 Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 302 LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 LR + SI AA+ LGA+ ++ F LP+ MPAI++G Sbjct: 163 LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISG 200 >gnl|CDD|182131 PRK09881, PRK09881, D-ala-D-ala transporter subunit; Provisional. Length = 296 Score = 32.5 bits (74), Expect = 0.20 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 284 LILALMTLPSII-IATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTV 342 L +A++ +P + +A G AL + AA GAS+ + H+L ++P ++ +++ Sbjct: 161 LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASL 220 Query: 343 SLARALGETAPLLFVGMVA 361 + A+ A L F+G+ A Sbjct: 221 DIGSAILMAATLGFIGLGA 239 >gnl|CDD|130251 TIGR01183, ntrB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. Length = 202 Score = 32.1 bits (73), Expect = 0.26 Identities = 17/46 (36%), Positives = 23/46 (50%) Query: 294 IIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 III T V ++ +P + A L SK +LP A+P I TG Sbjct: 96 IIINTAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTG 141 >gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional. Length = 217 Score = 32.0 bits (73), Expect = 0.30 Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352 AL +P+ + A+ +GA+ +Q V +LP A+P ++ +T++L +G +A Sbjct: 111 ALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSA 162 >gnl|CDD|131836 TIGR02789, nickel_nikB, nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. Length = 314 Score = 30.5 bits (69), Expect = 0.92 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 24/192 (12%) Query: 171 WFQKLDSDGALFLDFNYGFFINGASSRPEVAG-IGVAVVGSLYMMLIVIGLSFPLGIASA 229 W AL LDF + I+ E+A + + + + ++IV+ +S PLGI +A Sbjct: 71 WLWN-----ALHLDFGISY-ISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAA 124 Query: 230 IYLEE-FSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFK-MPRSTALVGGLILA 287 Y + H F F+ +I N +V+G +V +N T L+L Sbjct: 125 RYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGF---SVYLNLLPTNGAGTW--QHLVLP 179 Query: 288 LMTLPSIIIATGVALRTVPSSIRSA--------ALGLGASKVQTVFHHVLPLAMPAILTG 339 +TL + ++ R + +S+ A G + + H+L A+ ++T Sbjct: 180 AVTLALMSVSIYA--RLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITA 237 Query: 340 STVSLARALGET 351 + + LG T Sbjct: 238 LGMHIGELLGGT 249 >gnl|CDD|178315 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor. Length = 566 Score = 30.1 bits (68), Expect = 1.1 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 96 KLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYL 155 + S+ S L Q+ + LS RY R + + S I + LA NID L Sbjct: 65 RFSVRKS----LSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDF----LL 116 Query: 156 YSPANVHRMSD 166 S V+ S Sbjct: 117 SSFETVNSSSK 127 >gnl|CDD|184982 PRK15021, PRK15021, microcin C ABC transporter permease; Provisional. Length = 341 Score = 30.0 bits (67), Expect = 1.3 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 262 ILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKV 321 +L S V NF+ + T L G M+L ++ A LRT AA LG S Sbjct: 194 LLSSVVQPNFWWLLAITVLFG-----WMSLVGVVRAE--FLRTRNFDYIRAAQALGVSDR 246 Query: 322 QTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 + H+LP AM A LT L ++ L F+G Sbjct: 247 SIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLG 283 >gnl|CDD|152130 pfam11694, DUF3290, Protein of unknown function (DUF3290). This family of proteins with unknown function appears to be restricted to Firmicutes. Length = 149 Score = 28.5 bits (64), Expect = 3.4 Identities = 7/31 (22%), Positives = 18/31 (58%) Query: 395 RTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425 IL++++ + +I A +LR++F ++ Sbjct: 16 NWLRYILIIILLVVIIIFAFKYLRHKFDTKY 46 >gnl|CDD|183100 PRK11365, ssuC, alkanesulfonate transporter permease subunit; Provisional. Length = 263 Score = 28.4 bits (63), Expect = 3.6 Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 284 LILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVS 343 ++AL TL I I T +R + + A G S + H +LP A+P+I+ G + Sbjct: 129 FLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFA 188 Query: 344 L 344 L Sbjct: 189 L 189 >gnl|CDD|149555 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal. Length = 282 Score = 28.5 bits (64), Expect = 3.7 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 78 AILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHL--RKTLMTDPSLIGK 135 ++ + Y LV+K+LAR L +D LR S L L + S + Sbjct: 72 YVIFHSPYCKLVQKSLAR-LLYNDF----LRNPSSDKGNGVYEKLEALGGLKLEDSYTDR 126 Query: 136 TVE-VSLLASANI-DSALKGYLYSPANVHRM 164 +E + S + K L P V M Sbjct: 127 DLEKAFMQLSKPLFKKKTKPSLLLPTQVGNM 157 >gnl|CDD|182550 PRK10561, PRK10561, glycerol-3-phosphate transporter permease; Provisional. Length = 280 Score = 28.3 bits (63), Expect = 4.5 Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLL 355 AL+++P S+ AA GA ++ F LPL P V+L A +T P++ Sbjct: 165 ALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVI 219 >gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). Length = 250 Score = 27.9 bits (63), Expect = 4.9 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%) Query: 203 IGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGI 262 + +A++G++ + L+ PL + +A + + S + +N L ++P +V+ + Sbjct: 64 LAMAILGTV----LAAILALPLALLAA---RNITPSPWLSGLARLLLNFLRAIPELVWAL 116 Query: 263 LGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQ 322 + F G L LA T+ + A+ V A GASK+Q Sbjct: 117 I-------FVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQ 169 Query: 323 TVFHHVLPLAMPAIL 337 + + VLP +P L Sbjct: 170 VIRYGVLPQVLPQFL 184 >gnl|CDD|151888 pfam11449, DUF2899, Protein of unknown function (DUF2899). This is a bacterial family of uncharacterized proteins. Length = 298 Score = 27.3 bits (61), Expect = 7.2 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 8/103 (7%) Query: 215 LIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM 274 LIV+ + F +GI S +L + HK F + IL A IN + Sbjct: 54 LIVLAVGFIVGIISG-FLVDAFHKEDFLRPKLKEQ-------AGKVSILSLARAINLQGL 105 Query: 275 PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317 L+ GLI+AL+ + I L + A L Sbjct: 106 FWKVLLLPGLIIALLGGFQVDINQLFGLLEMTIEWIGAVFALL 148 >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. Length = 715 Score = 27.2 bits (60), Expect = 8.4 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%) Query: 278 TALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAIL 337 TA V + A +IIA+G A + + + KV T+FH L Sbjct: 233 TAKVKAAVWAAYGGTPVIIASGTAPKNITKVVE-------GKKVGTLFHEDAHLWPTVEQ 285 Query: 338 TGS 340 TG Sbjct: 286 TGE 288 >gnl|CDD|182891 PRK10998, malG, maltose transporter permease; Provisional. Length = 296 Score = 27.0 bits (60), Expect = 8.6 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 16/88 (18%) Query: 282 GGLILALMTLPSIIIATGVA-LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340 GG+I A + ++ + T T+ SS+ AA GA+ Q +LPL++P IL Sbjct: 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVP-IL--- 215 Query: 341 TVSLARALGETAPLLFVGMVAFVTDYPV 368 A + + +A +T+ PV Sbjct: 216 -----------AVVFILSFIAAITEVPV 232 >gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta subunit. Members of this protein family are the beta subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Length = 433 Score = 27.2 bits (60), Expect = 9.3 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Query: 262 ILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVP 306 I+ SAV ++ P++ +GG I ++++P + G ALR + Sbjct: 151 IVKSAVWGSY---PQTMDYMGGNIAGILSIPQKLEGLGYALRNIM 192 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.139 0.407 Gapped Lambda K H 0.267 0.0619 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,049,315 Number of extensions: 475450 Number of successful extensions: 1826 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1807 Number of HSP's successfully gapped: 117 Length of query: 425 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 329 Effective length of database: 3,920,105 Effective search space: 1289714545 Effective search space used: 1289714545 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (26.4 bits)