RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein
PstA. This model describes PtsA, one of a pair of
permease proteins in the ABC (high affinity) phosphate
transporter. In a number of species, this permease is
fused with the PtsC protein (TIGR02138). In the model
bacterium Escherichia coli, this transport system is
induced when the concentration of extrallular inorganic
phosphate is low. A constitutive, lower affinity
transporter operates otherwise.
Length = 271
Score = 188 bits (480), Expect = 2e-48
Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 9/243 (3%)
Query: 185 FNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSF 244
N GFF + GIG A+VG+L ++L+ I ++ PLGI +AIYL E++++ F+
Sbjct: 34 LNLGFFTKSPTPTGAEGGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYANESRFTKV 93
Query: 245 VQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRT 304
++ ++ LA VPSIV G+ G + + L G L LAL+ LP II T AL+
Sbjct: 94 IRFAVDILAGVPSIVVGLFGYGFFVLTMLGGGFSLLAGALALALLILPVIIRTTEEALKA 153
Query: 305 VPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF-VGMVAFV 363
VP +R A+ LGA+K QT+F VLP A+P ILTG +S+ARA GETAPLLF G AF
Sbjct: 154 VPKDLREASYALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFT 213
Query: 364 TDYPVGVTDIATAFPVQIYLWAADAERPFVE---RTFGAILLLLIFLAVINTAMLWLRNR 420
P + D PV IY A +E P+ E + A L+L++ + ++N LR R
Sbjct: 214 ---PPNLFDPFATLPVLIYNLA--SEGPYSEAQQLAWAAALVLILLVLLLNLIARLLRRR 268
Query: 421 FKK 423
FKK
Sbjct: 269 FKK 271
Score = 27.6 bits (62), Expect = 6.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 LFRFYCVVAVLVVFVFLILLLSSIVSKGIGAL 51
+F F +++ L+ LI +L I+ KG+ AL
Sbjct: 3 IFTFISLLSALLALGPLIWILIYILIKGLPAL 34
>gnl|CDD|152248 pfam11812, DUF3333, Domain of unknown function (DUF3333). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria. This presumed
domain is typically between 116 to 159 amino acids in
length.
Length = 155
Score = 144 bits (365), Expect = 4e-35
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 8 KKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIV 67
LK RY +E FR Y + A+L+ FL++LL SIVS G GA QT I+L + E ++
Sbjct: 2 DARLKKRYAAERRFRAYGLAAILIGLAFLVILLGSIVSNGYGAFQQTEITLEVTLDEEVL 61
Query: 68 DPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLM 127
DP R DP L A+Y L++ AL L L ++S A LR ++
Sbjct: 62 DPDGNR--DPKKLSTANYRPLIKDALEELLPEVGDRSDLRSDLYSLISEGAAAQLRDFVL 119
Query: 128 TDPSLIGKTVEVSLLASANIDSALKGY 154
+P LIG TV LLAS+++D LKG
Sbjct: 120 ANPELIGTTVTFWLLASSDVDGYLKGR 146
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease
protein PstC. The typical operon for the high affinity
inorganic phosphate ABC transporter encodes an
ATP-binding protein, a phosphate-binding protein, and
two permease proteins. This family consists of one of
the two permease proteins, PstC, which is homologous to
PstA (TIGR00974). In the model bacterium Escherichia
coli, this transport system is induced when the
concentration of extrallular inorganic phosphate is low.
A constitutive, lower affinity transporter operates
otherwise.
Length = 295
Score = 109 bits (275), Expect = 1e-24
Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 19/248 (7%)
Query: 192 NGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINN 251
G+ E G +VG+L LI + ++ P+GI AI+L E + K S ++ +
Sbjct: 50 PGSGPVQEQYGALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPK-RVRSVLKPVVEL 108
Query: 252 LASVPSIVYGILGSAVLINFFK---------------MPRSTALVGGLILALMTLPSIII 296
LA +PS+VYG G VL+ F K + L G++LA+M LP+I
Sbjct: 109 LAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIAS 168
Query: 297 ATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356
+ ALR VP S + A+ LGA+K +T+ +LP A I+ + L RALGET +
Sbjct: 169 ISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTM 228
Query: 357 VGMVAFVTDYPVGVTDIATAFPVQIYLWAADAE--RPFVERTFGAILLLLIFLAVINTAM 414
V F P+ + D T I +A F L+L + ++N
Sbjct: 229 VIGNVFPI-SPLSLFDPGTTITSLIANQFGEASGGSVHTSALFALGLVLFVITLLVNILA 287
Query: 415 LWLRNRFK 422
++ R +
Sbjct: 288 RYIVRRRR 295
>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA;
Provisional.
Length = 295
Score = 90.5 bits (225), Expect = 8e-19
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINN-LASVPS 257
G+ A+ GS ++L + PLGI + IYL E+ K + + ++ IN+ L S PS
Sbjct: 75 AGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRF-INDILLSAPS 133
Query: 258 IVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317
IV G+ +++ +M + G + LAL+ +P +I T L+ VP S+R AA LG
Sbjct: 134 IVVGLFVYTIVVA--QMEHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALG 191
Query: 318 ASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356
K + + L ++ I+TG +++AR GETAPLLF
Sbjct: 192 TPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
Provisional.
Length = 319
Score = 54.3 bits (131), Expect = 6e-08
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%)
Query: 185 FNYGFFINGASSRP-EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSS 243
F F P ++ G V + G+L I + ++ P+ A++L E + G+
Sbjct: 52 FGLSFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELA-PGWLKR 110
Query: 244 FVQANINNLASVPSIVYGILG----SAVLINFFKMPRSTALVG----------------- 282
+ I LA++PSIVYG+ G + + +F+ P L
Sbjct: 111 PLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGALFSGPAFGIGI 170
Query: 283 ---GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
G+ILA+M +P I P ++ +A G+G + + ++ VLP ++ G
Sbjct: 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGG 230
Query: 340 STVSLARALGETAPLLFV 357
+ L RALGET + F+
Sbjct: 231 VMLGLGRALGETMAVTFI 248
>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein.
Molybdate is chemically similar to sulfate, thiosulfate,
and selenate. These related substrates, and sometimes
molybdate itself, can be transported by the homologous
sulfate receptor. Some apparent molybdenum transport
operons include a permease related to this ModB,
although less similar than some sulfate permease
proteins and not included in this model.
Length = 208
Score = 53.8 bits (130), Expect = 9e-08
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 283 GLILA--LMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
G +LA +++ P ++ A V + AA LGAS++QT LPLA P +L G
Sbjct: 82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASEIQTFLKVTLPLAFPGLLAGC 141
Query: 341 TVSLARALGE-TAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGA 399
+S ARALGE A L+F G + G T P+ IY + +
Sbjct: 142 VLSFARALGEFGATLMFAGNIP-------GETQTI---PLAIYDAVESDYELAHQLSLVL 191
Query: 400 ILLLLIFLAVIN 411
+ LI L ++
Sbjct: 192 LAFSLIVLLLVE 203
>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in
this group is a gene designated NifC in Clostridium
pasturianum. It would be reasonable to presume that NifC
acts as a molybdate porter since the most common form of
nitrogenase is a molybdoenzyme. Several other sequences
falling within the scope of this model are annotated as
molybdate porters and one, from Halobacterium, is
annotated as a sulfate porter. There is presently no
experimental evidence to support annotations with this
degree of specificity.
Length = 225
Score = 48.2 bits (115), Expect = 4e-06
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 283 GLILA--LMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
G++LA + P + ++V A LGA ++T LP+A P +L G
Sbjct: 105 GVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGL 164
Query: 341 TVSLARALGE-TAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGA 399
++ ARALGE A L+F G + T P+ IYL
Sbjct: 165 VLAWARALGEFGATLMFAGSIQGKTR----------TLPLAIYLNIQSDNIEAAV-ASAL 213
Query: 400 ILLLLIFLAVI 410
+LL++ FL ++
Sbjct: 214 LLLVIAFLLLL 224
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein
CysT. This model represents CysT, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysW (TIGR02140). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present.
Length = 265
Score = 46.9 bits (112), Expect = 9e-06
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 283 GLILAL--MTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
G+++AL ++LP ++ L + + AA LGAS+ QT + +LP +PA+LTG
Sbjct: 134 GIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGF 193
Query: 341 TVSLARALGETAPLLFV 357
++ ARA+GE ++F+
Sbjct: 194 ALAFARAVGEYGSVIFI 210
>gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein;
Reviewed.
Length = 229
Score = 45.3 bits (108), Expect = 3e-05
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 287 ALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLAR 346
A+M P ++ A ++L V + AA LGAS + F LPL +P I+ G+ ++ AR
Sbjct: 100 AVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFAR 159
Query: 347 ALGETAPLLFVGMVAFVTDYP 367
+LGE F + FV++ P
Sbjct: 160 SLGE-----FGATITFVSNIP 175
>gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein;
Provisional.
Length = 355
Score = 44.3 bits (105), Expect = 6e-05
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVY 260
A + +A+V + + IVIGL PLGI A + ++ ++ + + P+ VY
Sbjct: 146 AMVTLALVLTALLFCIVIGL--PLGIWLA-------RSPRAAKIIRPLLDAMQTTPAFVY 196
Query: 261 GILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASK 320
L V++ F + +V +I AL P I+ T + + VP+ + A+ GAS
Sbjct: 197 --LVPIVML--FGIGNVPGVVVTIIFAL---PPIVRLTILGINQVPADLIEASRSFGASP 249
Query: 321 VQTVFHHVLPLAMPAILTGSTVSLARAL 348
Q +F LPLAMP I+ G +L AL
Sbjct: 250 RQMLFKVQLPLAMPTIMAGVNQTLMLAL 277
>gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system,
membrane component PhnV. This membrane component of an
ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 272
Score = 42.3 bits (99), Expect = 2e-04
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 217 VIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP- 275
L+ LG A A+ LE +G + + A ++PS+ LG A+LI F P
Sbjct: 82 AFALACGLGAALALALEGRKRQGV-GALLDALFMLPNAIPSVS---LGLAILIAFHAGPL 137
Query: 276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLA 332
S A+V AL+ L AL + I AA LGA + H +LPL
Sbjct: 138 DLNGSLAIVLFAHFALI-LAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLL 196
Query: 333 MPAILTGSTVSLARALGETAPLLFVGMVAFVT 364
MPAI+ + A +LGE L + F T
Sbjct: 197 MPAIMAALALGFALSLGELGATLMIYPPGFAT 228
>gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease
protein.
Length = 267
Score = 41.2 bits (97), Expect = 6e-04
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265
A+V S ++ +VIG+ PLGIA+A H+ + + ++ ++ + ++P+ VY I
Sbjct: 93 ALVLSATVVCMVIGV--PLGIAAA-------HRPWLYAIMRPVLDLMQTLPTFVYLI--- 140
Query: 266 AVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVF 325
+ F + L+ +I A+ P+ I T + + +VP + A GA+ Q ++
Sbjct: 141 -PALVLFGLGMVPGLISTVIFAI---PAPIRLTHLGISSVPQELVEAGEAFGATPSQLLW 196
Query: 326 HHVLPLAMPAILTGSTVSLARAL 348
LP AMP I+ G T ++ +L
Sbjct: 197 KVELPYAMPQIMAGLTQTIMLSL 219
>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease
protein. This ABC transporter permease
(membrane-spanning) component is found in a region of
the salmonella typhimurium LT2 genome responsible for
the catabolism of 2-aminoethylphosphonate via the phnWX
pathway (GenProp0238).
Length = 312
Score = 40.4 bits (94), Expect = 0.001
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 281 VGGLILALMTL--PSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILT 338
GG+ILA +T P ++ A + + AA LGA + + P A+PAI
Sbjct: 180 AGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAA 239
Query: 339 GSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIAT 375
G + L E LLF+G +T P+ + A
Sbjct: 240 GGILCFLLTLNEFGILLFIGAAGLIT-LPMAIYSKAI 275
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 277
Score = 40.1 bits (94), Expect = 0.001
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 286 LALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLA 345
+A ++P ++ L + AA LGA++ Q+ VLP PA+L G +S
Sbjct: 147 MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206
Query: 346 RALGETAPLLFV-GMVAFVTD 365
R+LGE ++F+ G +A+ T+
Sbjct: 207 RSLGEFGAVIFIAGNIAWKTE 227
>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system
permease PhnU; Provisional.
Length = 296
Score = 39.6 bits (93), Expect = 0.001
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 282 GGLILALMTL--PSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
GG+ILA +T P ++ A + + AA LGAS + +LP A PA+ G
Sbjct: 162 GGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
Query: 340 STVSLARALGETAPLLFVGMVAFVT 364
++ L L E +LF G VT
Sbjct: 222 GSLCLLLTLNEFGIVLFTGAKDVVT 246
>gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane
protein; Reviewed.
Length = 285
Score = 39.7 bits (93), Expect = 0.002
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 274 MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAM 333
M +A++ GL+ L LP +++ ++ + + AA LGA+K+QT ++PL M
Sbjct: 147 MFTESAVIIGLVYIL--LPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTM 204
Query: 334 PAILTGSTVSLARALG 349
P I+ G + L A+G
Sbjct: 205 PGIIAGCLLVLLPAMG 220
>gnl|CDD|162725 TIGR02140, permease_CysW, sulfate ABC transporter, permease protein
CysW. This model represents CysW, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysT (TIGR02139). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present.
Length = 261
Score = 37.4 bits (87), Expect = 0.007
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGIL-----G 264
+L + LIV+ L+ G+ +A L F G + I+ SV +V G++ G
Sbjct: 52 TLLVALIVVPLNTVFGVCAAWVLTRFQFPG--KRLLLTIIDLPFSVSPVVAGLIFVLLYG 109
Query: 265 SAVLINFFKMPRSTALVGGLILALMTLPSIIIAT------GVALRTVP------SSIRSA 312
S + + I + +LP I++AT VA +P + A
Sbjct: 110 SQGWLGPWLEDL-------DIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEA 162
Query: 313 ALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350
AL LGAS QT + LP +L G + ARA+GE
Sbjct: 163 ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGE 200
>gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein.
This model describes a subfamily of both CysT and CysW,
paralogous and generally tandemly encoded permease
proteins of the sulfate ABC transporter.
Length = 271
Score = 36.6 bits (85), Expect = 0.011
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 283 GLILALM--TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
G+ LA++ +LP ++ L + + AA LGAS QT + LP A+L G
Sbjct: 144 GMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGV 203
Query: 341 TVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAI 400
++ ARALGE G V V+ G T P+ I + P A+
Sbjct: 204 VLTFARALGE------FGAVVVVSGNIPGKTLTL---PLLIEERLEQYDYP-GAYVIAAV 253
Query: 401 LLL--LIFLAVINT 412
LLL L+ L +IN
Sbjct: 254 LLLVSLVTLFLINA 267
>gnl|CDD|181912 PRK09500, potC, spermidine/putrescine ABC transporter membrane
protein; Reviewed.
Length = 256
Score = 34.6 bits (80), Expect = 0.046
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 226 IASAIYLEEFSHKGFFSS--FVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGG 283
A A+Y F K F S FV + P IV I ++L+ F +
Sbjct: 80 TAVALYRYRFRGKKFVSGMLFV------VMMSPDIVMAI---SLLVLFMLLGIQLGFWS- 129
Query: 284 LILALMT--LPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
L+ A +T LP +++ L+ + AA LGAS+ + +LPLA+PA+ G
Sbjct: 130 LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
>gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional.
Length = 275
Score = 33.2 bits (76), Expect = 0.12
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 312 AALGLGASKVQTVFHHVLPLAMPAILTGSTVSL 344
AA LGAS+ Q ++ +LP A+P ILTG + L
Sbjct: 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGL 207
>gnl|CDD|182646 PRK10683, PRK10683, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 317
Score = 33.1 bits (76), Expect = 0.12
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 291 LPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGE 350
LP +++ AL + S+ AAL LGA ++T F ++PL I+ GS + A+GE
Sbjct: 196 LPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGE 255
>gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 281
Score = 32.9 bits (75), Expect = 0.15
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 302 LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
LR + SI AA+ LGA+ ++ F LP+ MPAI++G
Sbjct: 163 LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISG 200
>gnl|CDD|182131 PRK09881, PRK09881, D-ala-D-ala transporter subunit; Provisional.
Length = 296
Score = 32.5 bits (74), Expect = 0.20
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 284 LILALMTLPSII-IATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTV 342
L +A++ +P + +A G AL + AA GAS+ + H+L ++P ++ +++
Sbjct: 161 LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASL 220
Query: 343 SLARALGETAPLLFVGMVA 361
+ A+ A L F+G+ A
Sbjct: 221 DIGSAILMAATLGFIGLGA 239
>gnl|CDD|130251 TIGR01183, ntrB, nitrate ABC transporter, permease protein. This
model describes the nitrate transport permease in
bacteria. This is gene product of ntrB. The nitrate
transport permease is the integral membrane component of
the nitrate transport system and belongs to the
ATP-binding cassette (ABC) superfamily. At least in
photosynthetic bacteria nitrate assimilation is aided by
other proteins derived from the operon which among
others include products of ntrA, ntrB, ntrC, ntrD, narB.
Functionally ntrC and ntrD resemble the ATP binding
components of the binding protein-dependent transport
systems. Mutational studies have shown that ntrB and
ntrC are mandatory for nitrate accumulation. Nitrate
reductase is encoded by narB.
Length = 202
Score = 32.1 bits (73), Expect = 0.26
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 294 IIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339
III T V ++ +P + A L SK +LP A+P I TG
Sbjct: 96 IIINTAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTG 141
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit;
Provisional.
Length = 217
Score = 32.0 bits (73), Expect = 0.30
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352
AL +P+ + A+ +GA+ +Q V +LP A+P ++ +T++L +G +A
Sbjct: 111 ALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSA 162
>gnl|CDD|131836 TIGR02789, nickel_nikB, nickel ABC transporter, permease subunit
NikB. This family consists of the NikB family of nickel
ABC transporter permeases. Operons that contain this
protein also contain a homologous permease subunit NikC.
Nickel is used in cells as part of urease or certain
hydrogenases or superoxide dismutases.
Length = 314
Score = 30.5 bits (69), Expect = 0.92
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 171 WFQKLDSDGALFLDFNYGFFINGASSRPEVAG-IGVAVVGSLYMMLIVIGLSFPLGIASA 229
W AL LDF + I+ E+A + + + + ++IV+ +S PLGI +A
Sbjct: 71 WLWN-----ALHLDFGISY-ISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAA 124
Query: 230 IYLEE-FSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFK-MPRSTALVGGLILA 287
Y + H F F+ +I N +V+G +V +N T L+L
Sbjct: 125 RYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGF---SVYLNLLPTNGAGTW--QHLVLP 179
Query: 288 LMTLPSIIIATGVALRTVPSSIRSA--------ALGLGASKVQTVFHHVLPLAMPAILTG 339
+TL + ++ R + +S+ A G + + H+L A+ ++T
Sbjct: 180 AVTLALMSVSIYA--RLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITA 237
Query: 340 STVSLARALGET 351
+ + LG T
Sbjct: 238 LGMHIGELLGGT 249
>gnl|CDD|178315 PLN02713, PLN02713, Probable pectinesterase/pectinesterase
inhibitor.
Length = 566
Score = 30.1 bits (68), Expect = 1.1
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 96 KLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYL 155
+ S+ S L Q+ + LS RY R + + S I + LA NID L
Sbjct: 65 RFSVRKS----LSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDF----LL 116
Query: 156 YSPANVHRMSD 166
S V+ S
Sbjct: 117 SSFETVNSSSK 127
>gnl|CDD|184982 PRK15021, PRK15021, microcin C ABC transporter permease;
Provisional.
Length = 341
Score = 30.0 bits (67), Expect = 1.3
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 262 ILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKV 321
+L S V NF+ + T L G M+L ++ A LRT AA LG S
Sbjct: 194 LLSSVVQPNFWWLLAITVLFG-----WMSLVGVVRAE--FLRTRNFDYIRAAQALGVSDR 246
Query: 322 QTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
+ H+LP AM A LT L ++ L F+G
Sbjct: 247 SIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLG 283
>gnl|CDD|152130 pfam11694, DUF3290, Protein of unknown function (DUF3290). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 149
Score = 28.5 bits (64), Expect = 3.4
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 395 RTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425
IL++++ + +I A +LR++F ++
Sbjct: 16 NWLRYILIIILLVVIIIFAFKYLRHKFDTKY 46
>gnl|CDD|183100 PRK11365, ssuC, alkanesulfonate transporter permease subunit;
Provisional.
Length = 263
Score = 28.4 bits (63), Expect = 3.6
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 284 LILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVS 343
++AL TL I I T +R + + A G S + H +LP A+P+I+ G +
Sbjct: 129 FLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFA 188
Query: 344 L 344
L
Sbjct: 189 L 189
>gnl|CDD|149555 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A
synthase C terminal.
Length = 282
Score = 28.5 bits (64), Expect = 3.7
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 78 AILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHL--RKTLMTDPSLIGK 135
++ + Y LV+K+LAR L +D LR S L L + S +
Sbjct: 72 YVIFHSPYCKLVQKSLAR-LLYNDF----LRNPSSDKGNGVYEKLEALGGLKLEDSYTDR 126
Query: 136 TVE-VSLLASANI-DSALKGYLYSPANVHRM 164
+E + S + K L P V M
Sbjct: 127 DLEKAFMQLSKPLFKKKTKPSLLLPTQVGNM 157
>gnl|CDD|182550 PRK10561, PRK10561, glycerol-3-phosphate transporter permease;
Provisional.
Length = 280
Score = 28.3 bits (63), Expect = 4.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLL 355
AL+++P S+ AA GA ++ F LPL P V+L A +T P++
Sbjct: 165 ALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVI 219
>gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein
PhnE. Phosphonates are a class of compound analogous to
organic phosphates, but in which the C-O-P linkage is
replaced by a direct, stable C-P bond. Some bacteria can
utilize phosphonates as a source of phosphorus. This
family consists of permease proteins of known or
predicted phosphonate ABC transporters. Often this
protein is found as a duplicated pair, occasionally as a
fused pair. Certain "second" copies score in between the
trusted and noise cutoff and should be considered true
hits (by context).
Length = 250
Score = 27.9 bits (63), Expect = 4.9
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 203 IGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGI 262
+ +A++G++ + L+ PL + +A + + S + +N L ++P +V+ +
Sbjct: 64 LAMAILGTV----LAAILALPLALLAA---RNITPSPWLSGLARLLLNFLRAIPELVWAL 116
Query: 263 LGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQ 322
+ F G L LA T+ + A+ V A GASK+Q
Sbjct: 117 I-------FVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQ 169
Query: 323 TVFHHVLPLAMPAIL 337
+ + VLP +P L
Sbjct: 170 VIRYGVLPQVLPQFL 184
>gnl|CDD|151888 pfam11449, DUF2899, Protein of unknown function (DUF2899). This is
a bacterial family of uncharacterized proteins.
Length = 298
Score = 27.3 bits (61), Expect = 7.2
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 215 LIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM 274
LIV+ + F +GI S +L + HK F + IL A IN +
Sbjct: 54 LIVLAVGFIVGIISG-FLVDAFHKEDFLRPKLKEQ-------AGKVSILSLARAINLQGL 105
Query: 275 PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317
L+ GLI+AL+ + I L + A L
Sbjct: 106 FWKVLLLPGLIIALLGGFQVDINQLFGLLEMTIEWIGAVFALL 148
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region.
Length = 715
Score = 27.2 bits (60), Expect = 8.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 278 TALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAIL 337
TA V + A +IIA+G A + + + KV T+FH L
Sbjct: 233 TAKVKAAVWAAYGGTPVIIASGTAPKNITKVVE-------GKKVGTLFHEDAHLWPTVEQ 285
Query: 338 TGS 340
TG
Sbjct: 286 TGE 288
>gnl|CDD|182891 PRK10998, malG, maltose transporter permease; Provisional.
Length = 296
Score = 27.0 bits (60), Expect = 8.6
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 282 GGLILALMTLPSIIIATGVA-LRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGS 340
GG+I A + ++ + T T+ SS+ AA GA+ Q +LPL++P IL
Sbjct: 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVP-IL--- 215
Query: 341 TVSLARALGETAPLLFVGMVAFVTDYPV 368
A + + +A +T+ PV
Sbjct: 216 -----------AVVFILSFIAAITEVPV 232
>gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta
subunit. Members of this protein family are the beta
subunit of methyl coenzyme M reductase, also called
coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This
enzyme, with alpha, beta, and gamma subunits, catalyzes
the last step in methanogenesis. Several methanogens
have encode two such enzymes, designated I and II; this
model does not separate the isozymes.
Length = 433
Score = 27.2 bits (60), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 262 ILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVP 306
I+ SAV ++ P++ +GG I ++++P + G ALR +
Sbjct: 151 IVKSAVWGSY---PQTMDYMGGNIAGILSIPQKLEGLGYALRNIM 192
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.139 0.407
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,049,315
Number of extensions: 475450
Number of successful extensions: 1826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 117
Length of query: 425
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 329
Effective length of database: 3,920,105
Effective search space: 1289714545
Effective search space used: 1289714545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.4 bits)