HHsearch alignment for GI: 254780707 and conserved domain: CHL00180
>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=98.43 E-value=1.8e-05 Score=49.20 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=124.2
Q ss_pred CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 37679998034258-99999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r 24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346)
Q Consensus 24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346)
T Consensus 93 ~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~-~~------- 159 (307)
T CHL00180 93 QGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQ-LQVHSTRRIAWSVANGQ----IDLAIIGGEVPTE-LK------- 159 (307)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCC-CC-------
T ss_conf 25860101040666664358899999988899727-89779999999998798----0099975778866-67-------
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346)
Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346)
T Consensus 160 ~~l~~~~l~~~~~~lv~~~~hpla~----------------------~~~v~~~dL~----~--~~~i~~~~~~~~~~~~ 211 (307)
T CHL00180 160 DNLQVTPYAEDELALILPKSHPFAK----------------------LKKIQKEDLY----R--LRFIALDSQSTIRKVI 211 (307)
T ss_pred CCEEEEEEECCCEEEEECCCCHHHC----------------------CCCCCHHHHH----C--CCEEEECCCCCHHHHH
T ss_conf 8549999432427999738980223----------------------9999999981----7--9848717999689999
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CCC
Q ss_conf 988513455565410111110136600013444310246640211662367776310153210013320011001--110
Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DVL 260 (346)
Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~~ 260 (346)
T Consensus 212 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l-~~~v~~g~Gia~lP~~~v~~~~~~g~l 264 (307)
T CHL00180 212 DNILIQNGIDSSR--------------------------FKIEMELNSIEAI-KNAVQSGLGAAFVSVSAIEKELELGTL 264 (307)
T ss_pred HHHHHHCCCCCCC--------------------------CEEEEEECCHHHH-HHHHHHCCEEEECCHHHHHHHHHCCCE
T ss_conf 9999976998455--------------------------4279997809999-999993994998259999989877988
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf 013445767895560279875036789997078856688999999997498
Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346)
Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346)
T Consensus 265 ~~~~~------------~~~~~~r~i~lv~~~-~r~~s~a~~~F~~~l~~~ 302 (307)
T CHL00180 265 HWAKI------------ENITIKRTLSIITNP-NRYRSKAAETFSKEILTL 302 (307)
T ss_pred EEEEC------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf 99978------------999850499999979-597799999999999985