HHsearch alignment for GI: 254780707 and conserved domain: PRK10837

>PRK10837 putative DNA-binding transcriptional regulator; Provisional.
Probab=98.37  E-value=4.9e-05  Score=46.80  Aligned_cols=198  Identities=15%  Similarity=0.126  Sum_probs=116.5

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
T Consensus        87 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~---------  152 (291)
T PRK10837         87 DNGAIRIYASSTIGNYILPAMIARYRHDYPQLPLE-LSVGNSQDVIQAVLDFR----VDIGLIEGPCHSTE---------  152 (291)
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCC----CCEEEECCCCCCCC---------
T ss_conf             88629999617999999999999999648993599-99888899999998088----41667417889987---------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
T Consensus       153 --l~~~~l~~~~~~~v~~p~~~l~~----------------------~~-i~~~~l----~~~~--~i~~~~~~~~r~~~  201 (291)
T PRK10837        153 --IISEPWLEDELVVFAAPDSPLAR----------------------GP-VTLEQL----AAAP--WILRERGSGTREIV  201 (291)
T ss_pred             --EEEEEEECCCEEEEECCCCHHHC----------------------CC-CCHHHH----HCCC--EEEECCCCCHHHHH
T ss_conf             --18999441418999878866537----------------------99-998998----0798--79944998689999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC--CC
Q ss_conf             9885134555654101111101366000134443102466402116623677763101532100133200110011--10
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD--VL  260 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~--~~  260 (346)
T Consensus       202 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~v-~~G~Gia~lp~~~v~~~l~~g~L  251 (291)
T PRK10837        202 DYLLLSHLPRFE-----------------------------MAMELGNSEAIKHAV-RHGLGISCLSRRVIADQLQAGTL  251 (291)
T ss_pred             HHHHHHCCCCCC-----------------------------EEEECCCHHHHHHHH-HHCCCEEECCHHHHHHHHHCCCE
T ss_conf             999985488653-----------------------------013129799999999-95991897249999999878997


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             0134457678955602798750367899970788566889999999974
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
T Consensus       252 ~~l~~------------~~~~~~~~~~lv~~k-~~~ls~~~~~Fidfl~  287 (291)
T PRK10837        252 VEVAV------------PLPRLMRTLWRIHHR-QKHLSNALQRFLSYCQ  287 (291)
T ss_pred             EEEEC------------CCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf             99707------------888861279999989-7865999999999986