HHsearch alignment for GI: 254780707 and conserved domain: PRK10837
>PRK10837 putative DNA-binding transcriptional regulator; Provisional.
Probab=98.37 E-value=4.9e-05 Score=46.80 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=116.5
Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346)
Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346)
T Consensus 87 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~--------- 152 (291)
T PRK10837 87 DNGAIRIYASSTIGNYILPAMIARYRHDYPQLPLE-LSVGNSQDVIQAVLDFR----VDIGLIEGPCHSTE--------- 152 (291)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCC----CCEEEECCCCCCCC---------
T ss_conf 88629999617999999999999999648993599-99888899999998088----41667417889987---------
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346)
Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346)
T Consensus 153 --l~~~~l~~~~~~~v~~p~~~l~~----------------------~~-i~~~~l----~~~~--~i~~~~~~~~r~~~ 201 (291)
T PRK10837 153 --IISEPWLEDELVVFAAPDSPLAR----------------------GP-VTLEQL----AAAP--WILRERGSGTREIV 201 (291)
T ss_pred --EEEEEEECCCEEEEECCCCHHHC----------------------CC-CCHHHH----HCCC--EEEECCCCCHHHHH
T ss_conf --18999441418999878866537----------------------99-998998----0798--79944998689999
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC--CC
Q ss_conf 9885134555654101111101366000134443102466402116623677763101532100133200110011--10
Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD--VL 260 (346)
Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~--~~ 260 (346)
T Consensus 202 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~v-~~G~Gia~lp~~~v~~~l~~g~L 251 (291)
T PRK10837 202 DYLLLSHLPRFE-----------------------------MAMELGNSEAIKHAV-RHGLGISCLSRRVIADQLQAGTL 251 (291)
T ss_pred HHHHHHCCCCCC-----------------------------EEEECCCHHHHHHHH-HHCCCEEECCHHHHHHHHHCCCE
T ss_conf 999985488653-----------------------------013129799999999-95991897249999999878997
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 0134457678955602798750367899970788566889999999974
Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346)
Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346)
T Consensus 252 ~~l~~------------~~~~~~~~~~lv~~k-~~~ls~~~~~Fidfl~ 287 (291)
T PRK10837 252 VEVAV------------PLPRLMRTLWRIHHR-QKHLSNALQRFLSYCQ 287 (291)
T ss_pred EEEEC------------CCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf 99707------------888861279999989-7865999999999986