HHsearch alignment for GI: 254780707 and conserved domain: PRK11233

>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=96.98  E-value=0.022  Score=32.04  Aligned_cols=200  Identities=11%  Similarity=0.074  Sum_probs=108.1

Q ss_pred             CCCCCEEEEEEC-CH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf             013767999803-42-5899999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r   22 TFARNRIRIAGS-ST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK   99 (346)
Q Consensus        22 ~~a~~~I~i~GS-st-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~   99 (346)
T Consensus        87 ~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~-l~~~~~~~l~~~l~~g~----~Dlai~~~~~~~--------  153 (305)
T PRK11233         87 QALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIY-LHENSGAVLNEKLINGQ----LDMAVIYEHSPV--------  153 (305)
T ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCC----EEEEEEECCCCC--------
T ss_conf             78740499999621556653699999999978942999-72388799999987698----479998279898--------


Q ss_pred             CCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH
Q ss_conf             48787246665215412554166654568888888764102555553236730232310011122450354488542357
Q gi|254780707|r  100 HGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR  179 (346)
Q Consensus       100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~  179 (346)
T Consensus       154 ---~~l~~~~l~~~~l~lv~~~~~p~~~i~l~~l-----------------------------~~~~--~i~~~~~~~~r  199 (305)
T PRK11233        154 ---AGVSSQALLKEDLFLVGTQDCPGQSVDLNAI-----------------------------AQMN--LFLPRDYSAVR  199 (305)
T ss_pred             ---CCCEEEEEEECCEEEEECCCCCCCCCCHHHH-----------------------------CCCC--EEECCCCCHHH
T ss_conf             ---8828999985358999847788787899998-----------------------------0899--89879998499


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC-
Q ss_conf             8999885134555654101111101366000134443102466402116623677763101532100133200110011-
Q gi|254780707|r  180 EVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD-  258 (346)
Q Consensus       180 ~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~-  258 (346)
T Consensus       200 ~~~~~~~~~~~~~~-----------------------------~~~~e~~~~~~i~~~V~-~G~GiailP~~~~~~~~~~  249 (305)
T PRK11233        200 LRVDEAFSLRRLTA-----------------------------KVIGEIESIATLTAAIA-SGMGVTVLPESAARSLCGA  249 (305)
T ss_pred             HHHHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCEEEEEHHHHHHHHHHC
T ss_conf             99999999779998-----------------------------47999996999999999-7997898719999987534


Q ss_pred             -CCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             -10013445767895560279875036789997078856688999999997498
Q gi|254780707|r  259 -VLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       259 -~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
T Consensus       250 ~~~~~~-----~~~-------~p~~~~~~~l~~~~~-r~lspaa~af~d~L~~~  290 (305)
T PRK11233        250 VNGWMS-----RIT-------TPSMSLSLSLNLSAR-ANLSPQAQAVKEILLSL  290 (305)
T ss_pred             CCEEEE-----ECC-------CCCCEEEEEEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf             976999-----259-------998665999999890-98899999999999997