HHsearch alignment for GI: 254780707 and conserved domain: PRK11233
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=96.98 E-value=0.022 Score=32.04 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=108.1
Q ss_pred CCCCCEEEEEEC-CH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 013767999803-42-5899999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r 22 TFARNRIRIAGS-ST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK 99 (346)
Q Consensus 22 ~~a~~~I~i~GS-st-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~ 99 (346)
T Consensus 87 ~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~-l~~~~~~~l~~~l~~g~----~Dlai~~~~~~~-------- 153 (305)
T PRK11233 87 QALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIY-LHENSGAVLNEKLINGQ----LDMAVIYEHSPV-------- 153 (305)
T ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCC----EEEEEEECCCCC--------
T ss_conf 78740499999621556653699999999978942999-72388799999987698----479998279898--------
Q ss_pred CCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH
Q ss_conf 48787246665215412554166654568888888764102555553236730232310011122450354488542357
Q gi|254780707|r 100 HGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR 179 (346)
Q Consensus 100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~ 179 (346)
T Consensus 154 ---~~l~~~~l~~~~l~lv~~~~~p~~~i~l~~l-----------------------------~~~~--~i~~~~~~~~r 199 (305)
T PRK11233 154 ---AGVSSQALLKEDLFLVGTQDCPGQSVDLNAI-----------------------------AQMN--LFLPRDYSAVR 199 (305)
T ss_pred ---CCCEEEEEEECCEEEEECCCCCCCCCCHHHH-----------------------------CCCC--EEECCCCCHHH
T ss_conf ---8828999985358999847788787899998-----------------------------0899--89879998499
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC-
Q ss_conf 8999885134555654101111101366000134443102466402116623677763101532100133200110011-
Q gi|254780707|r 180 EVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD- 258 (346)
Q Consensus 180 ~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~- 258 (346)
T Consensus 200 ~~~~~~~~~~~~~~-----------------------------~~~~e~~~~~~i~~~V~-~G~GiailP~~~~~~~~~~ 249 (305)
T PRK11233 200 LRVDEAFSLRRLTA-----------------------------KVIGEIESIATLTAAIA-SGMGVTVLPESAARSLCGA 249 (305)
T ss_pred HHHHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCEEEEEHHHHHHHHHHC
T ss_conf 99999999779998-----------------------------47999996999999999-7997898719999987534
Q ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf -10013445767895560279875036789997078856688999999997498
Q gi|254780707|r 259 -VLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346)
Q Consensus 259 -~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346)
T Consensus 250 ~~~~~~-----~~~-------~p~~~~~~~l~~~~~-r~lspaa~af~d~L~~~ 290 (305)
T PRK11233 250 VNGWMS-----RIT-------TPSMSLSLSLNLSAR-ANLSPQAQAVKEILLSL 290 (305)
T ss_pred CCEEEE-----ECC-------CCCCEEEEEEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 976999-----259-------998665999999890-98899999999999997