HHsearch alignment for GI: 254780707 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=98.40 E-value=4.5e-05 Score=46.97 Aligned_cols=201 Identities=12% Similarity=0.146 Sum_probs=117.1
Q ss_pred CCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 137679998034258-9999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 23 FARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 23 ~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 88 ~~~G~l~ig~~~~~~~~~l~~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~-------- 154 (292)
T PRK11242 88 LSRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLT-IREMPQERIEALLADDE----LDVGIAFAPVHSPE-------- 154 (292)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----CCEEEEECCCCCCC--------
T ss_conf 777658630245778887389988888648897348-99768899999986798----55799836888877--------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 155 ---l~~~~l~~~~~~~v~~~~h~la~~---------------------~~~is~~~L----~~~~~i~--~~~~~~~~~~ 204 (292)
T PRK11242 155 ---IEAQPLFTETLALVVGRTHPLAAR---------------------RKPLTLDEL----ADEPLVL--LSAEFATREQ 204 (292)
T ss_pred ---CEEEEECCCEEEEEEECCCHHHHC---------------------CCCCCHHHH----CCCCEEE--ECCCCCHHHH
T ss_conf ---256542045079999089804227---------------------999999998----1899899--6799857999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346)
T Consensus 205 ~~~~~~~~~i~~-----------------------------~~~~~~~~~~~~~~~V~~g-~Gi~ilP~~~~~-~~~~l~ 253 (292)
T PRK11242 205 IDRYFRRHGITP-----------------------------RVAIEANSISAVLEIVRRG-RLATLLPAAIAR-EHDDLC 253 (292)
T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHHC-CEEEEEHHHHHH-HCCCEE
T ss_conf 999999769998-----------------------------5367538899999999979-969970289860-089989
Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 1344576789556027987503678999707885668899999999749
Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346)
Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346)
T Consensus 254 ~i~l~~------------~~~~r~i~lv~~k-~~~~s~~~~~Fid~l~e 289 (292)
T PRK11242 254 AVALDP------------PLPQRTAALLRRK-GAYRSAAARAFIELALE 289 (292)
T ss_pred EEECCC------------CCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 998989------------9870399999989-39889999999999986